Psyllid ID: psy670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Secondary Structure (PSIPRED)
ccEEEEcEEEEEEEEEEEEEEEccEEcEEEccEEEcccccEEEEEEEccccEEEEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEccccccccccccccccccccEEEEccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccccccEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccccccEEEEccccEEEcccccEEEEEEEEEEcccEEEEEEccEEEcccccEEEEEccccccEEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEEEEcccccccccEEEEcccEEEEEccccEEEEEEEEcccccEEEEEEccEEccccccEEEEEEEEccEEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEccccccccccccccEEEccccccEEEEcccEEEEccccEEEEEEEEEEEcccEEEEEEccEEccccccEEEEEEEEcccEEEEEEEEEEccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccccEEEEEEccEEEcccccEEEEEEccccEEccEEEEEEEccccccccEEEEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEccccEEEEEEEcEEEcccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEccccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEccccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEEEccccEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccEEEcccEEEEEEEcccccccccEEcccccEcccccccEEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEccEEEEEcccEEEEEEEccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mtfpkelksytlegeptkQIEANFQmnmyhkgsllKMSDRLSSTLVQDQSRLYYLAVLTIknvqksdsgeYKVIAknkngegsstvnlnfseedgklkvpggkaprfpkkptihqdgdLLVMECVleaspmpdiiwyQGTKViedtgrikmskksigkdtYLLRLEinnptkddggnyrcnacnsigeSNANIALnfqggengagfapsfiekpriipnesgtLIQMkckcsakprpevkwfkadklvkESSKIKIIVNEQDDTYEIICEitdpigpdsgtyrcnvknefgesnanlnlnieaeaepegdpptfiekpkirseqggKLVVMECKvkakpmpeivwfhegkelqqtdriswnvtlkgdkyhirlevkdprkedtglykcnIKNFHGELNANLTLNIEMVRFIKYRVRsnkgivgkmglvktrsyhrdfsvnpqfkkySVLTLSVVPVIREVPKVVTISKKKTVVIECKVMsmyepsvtwmkekntvkednkhvvHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Flexible Loop (DISEMBL)
mtfpkelksytlegeptKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTiknvqksdsgeYKVIaknkngegsstvnlnfseedgklkvpggkaprfpkkptihqdgDLLVMECVLEASPMPDIIWYQGTKViedtgrikmskksigkdtyllRLEInnptkddggnyRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCkcsakprpevkwfkadklvkesskikiivneqddtyEIICEItdpigpdsGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIekpkirseqggkLVVMECKVKAKPMPEIVWfhegkelqqtdriswnvtlkgdkyhirlevkdprkedtGLYKCNIKNFHGELNANLTLNIEMVRFIKYRvrsnkgivgkmglVKTRSYHRDfsvnpqfkkysvltlsvvpvirevpkvvtiskkktvvieCKVMSMYEPSVTWMKEKntvkednkhvvhieqvkdvsmNFELWLGivekrgpsikiiyyiapfyk
Low Complexity Region (SEG)
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESnanlnlnieaeaepeGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSvvpvirevpkvvtiskkktvviECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Disordered region (IsUnstruct)
***************************MYH***LL*******STLVQDQSRLYYLAVLTIKNVQ**************************************************QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF************************************KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFY*
Disordered Region (DISOPRED)
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED************FPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ**********LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKY**************VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Disordered Region (DISEMBL)
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Disordered Region (DISPRO)
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
Q18066	640	Disorganized muscle prote	yes	N/A	0.553	0.467	0.327	4e-41
Q23551	7158	Twitchin OS=Caenorhabditi	no	N/A	0.366	0.027	0.446	2e-40
O01761	8081	Muscle M-line assembly pr	no	N/A	0.737	0.049	0.251	2e-31
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.588	0.009	0.252	2e-23
P20241	1302	Neuroglian OS=Drosophila	no	N/A	0.546	0.226	0.243	4e-23
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.681	0.010	0.239	1e-22
Q9HCK4	1378	Roundabout homolog 2 OS=H	no	N/A	0.740	0.290	0.242	8e-22
Q7TPD3	1470	Roundabout homolog 2 OS=M	no	N/A	0.720	0.264	0.246	7e-21
G5EBF1	1273	Protein sax-3 OS=Caenorha	no	N/A	0.592	0.251	0.271	8e-21
O89026	1612	Roundabout homolog 1 OS=M	no	N/A	0.740	0.248	0.239	1e-20

>sp|Q18066|DIM_CAEEL Disorganized muscle protein 1 OS=Caenorhabditis elegans GN=dim-1 PE=1 SV=3

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 169/321 (52%), Gaps = 22/321 (6%)

Query: 99  VPGGKAPRFPKKPTIHQDGD-LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           +P GKAP FP++P   Q+ D  L +EC ++A+P P + WY   K +E++GR   +  + G
Sbjct: 317 MPDGKAPHFPQQPVARQNDDGSLELECFVDANPTPQVKWYYDNKEVENSGRFSANLANKG 376

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
            D+Y   L I      D G YRC   N  G+ NAN  L   G       +P+F+EKP+I 
Sbjct: 377 SDSYSAILTIKELADADAGAYRCAIVNPHGKGNANFNLKLTGFS-----SPTFVEKPQIS 431

Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFK-----ADKLVKESSKIKIIVN-EQDDTYEIICEI 271
             + G ++ M+ +  +   P   W K     A++++  S +IK +   E  + Y    EI
Sbjct: 432 SRDDGQVMVMEFRAKSILEPTFVWQKLVGGGAEEIIANSDRIKAVKKLEAGNVYYSALEI 491

Query: 272 TDPI-GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI--RSEQGGK- 327
            +P    D+G + C VKNE G+  A   +  E    PEG  P+F  KP+I  ++  GG+ 
Sbjct: 492 KEPTKDKDAGQFICTVKNESGKLTATFTVKFEV---PEG-APSFTRKPQILQQTSAGGEP 547

Query: 328 LVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGL 385
            +  +    A+  P++ W   + K+++++ RI +    +G+  +  +LE+ + + +D+G 
Sbjct: 548 AICFDIGYSARMNPQVTWISPKSKKMKESSRIKFKTNDEGNGNFTAQLELTNYKAKDSGT 607

Query: 386 YKCNIKNFHGELNANLTLNIE 406
           Y CNIKN  GE N  LTLNIE
Sbjct: 608 YTCNIKNDAGEANVELTLNIE 628

Stabilizes the attachment of the myofilament lattice to the muscle cell membrane. Isoform b is sufficient for wild-type function.
Caenorhabditis elegans (taxid: 6239)

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 114/204 (55%), Gaps = 6/204 (2%)

Query: 104 APRFPKKPTIHQD--GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           APRF +KP+I Q   GDLL MEC LEA P P I W     ++E +GR+  +   +G   Y
Sbjct: 4   APRFTQKPSIQQTPTGDLL-MECHLEADPQPTIAWQHSGNLLEPSGRVVQTLTPLGGSLY 62

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF--QGGENGAGFAPSFIEKPRIIPN 219
              L I  P   DGG Y+C A N +GESNANI LNF   GG+      PSF+ KPRIIP 
Sbjct: 63  KATLVIKEPNAGDGGAYKCTARNQLGESNANINLNFAGAGGDEAKSRGPSFVGKPRIIPK 122

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDTYEIICEITDPIGPD 278
           + G LI M+CK  +   P  KW K    +        I ++  D TY    EI  P   D
Sbjct: 123 DGGALIVMECKVKSASTPVAKWMKDGVPLSMGGLYHAIFSDLGDQTYLCQLEIRGPSSSD 182

Query: 279 SGTYRCNVKNEFGESNANLNLNIE 302
           +G YRCN++N+ GE+NANL LN E
Sbjct: 183 AGQYRCNIRNDQGETNANLALNFE 206

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 200/489 (40%), Gaps = 91/489 (18%)

Query: 57   VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPTIH 114
             L IK+   +D G+Y   A NK G+  +   L   +   + +      P F  P K T  
Sbjct: 3638 TLVIKDTNNADFGKYTCQATNKAGKDETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFA 3697

Query: 115  QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
             +GD +V+EC +     P I +++  + +E    +++     G     ++L I N  K+D
Sbjct: 3698 VEGDTVVLECKVNKESHPQIKFFKNDQPVEIGQHMQLEVLEDGN----IKLTIQNAKKED 3753

Query: 175  GGNYRCNACNSIGESNANIALNFQGG-------------------------------ENG 203
             G YRC A N  G++N N  L  Q                                 + G
Sbjct: 3754 VGAYRCEAVNVAGKANTNADLKIQFAAKVEEHVTDESGQLEEIGQFETVGDTASSKTDTG 3813

Query: 204  AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
             G AP F+E  R           +KCK   +PRP++KW K  K V+ S++++    E  D
Sbjct: 3814 RG-APEFVELLRSCTVTEKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRA---EHKD 3869

Query: 264  TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP--EGDPPTFIEKPKIR 321
               +     +    D+G YRC  +NE+G +     + +  E  P  +G+ P F++  K  
Sbjct: 3870 DGTLTLTFDNVTQADAGEYRCEAENEYGSAWTEGPIIVTLEGAPKIDGEAPDFLQPVKPA 3929

Query: 322  SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
                G+  V+E K+  KP P + W+  G+EL+ +DR+       G +   RL V + + +
Sbjct: 3930 VVTVGETAVLEGKISGKPKPSVKWYKNGEELKPSDRVKIENLDDGTQ---RLTVTNAKLD 3986

Query: 382  DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
            D   Y+C   N  G++ +++TL ++                                V P
Sbjct: 3987 DMDEYRCEASNEFGDVWSDVTLTVK----------------------------EPAQVAP 4018

Query: 442  QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
             F K     LS           + + + +T   ECKV S  +P V W K+   +KED + 
Sbjct: 4019 GFFK----ELS----------AIQVKETETAKFECKV-SGTKPDVKWFKDGTPLKEDKR- 4062

Query: 502  VVHIEQVKD 510
             VH E   D
Sbjct: 4063 -VHFESTDD 4070

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 34/352 (9%)

Query: 55   LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
            +++L I + +K DSGEY    +N  G  S   ++N  +    L +P     +  K  +I 
Sbjct: 5521 VSILKIISTEKKDSGEYTFEVQNDVGRSSCKASINVLD----LIIPPSFTKKLRKMDSIK 5576

Query: 115  QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
              G  + +EC++  S    I W++  + I  + + K S      +T  L  EI+     D
Sbjct: 5577 --GSFIDLECIVAGSHPISIQWFKDDQEISASDKHKFS---FHDNTAFL--EISQLEGTD 5629

Query: 175  GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
             G Y C+A N  G S  +  L  +         P F+EKP+      GT +Q+K      
Sbjct: 5630 SGTYTCSATNKAGHSQCSGHLTVKE-------PPYFVEKPQSQDVNPGTRVQLKALVGGT 5682

Query: 235  PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
                +KWFK +K +   +   +    +DDT  I+ E+      DSGTY C + N+ G ++
Sbjct: 5683 APMTIKWFKDNKELHPGAARSVW---KDDTSTIL-ELFSAKAADSGTYICQLSNDVGTTS 5738

Query: 295  ANLNLNIEAEAEPEGDPPTFIEKPK-IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ 353
            +   + ++       +PP FI+KP  +   + G+    EC+V   P   + W+ +G E+ 
Sbjct: 5739 SKATIFVK-------EPPQFIKKPSPVLVLRNGQSTTFECQVTGTPEIRVSWYLDGNEI- 5790

Query: 354  QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             TD   + ++          ++ + R E++G Y C  +N  G  + ++ L +
Sbjct: 5791 -TDLRKYGISFVDG--LATFQISNARVENSGTYVCEARNDAGTASCSIELKV 5839

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P20241|NRG_DROME Neuroglian OS=Drosophila melanogaster GN=Nrg PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 139/329 (42%), Gaps = 34/329 (10%)

Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
           ++ ++   G  + + C+   +P+P  +W +      D  RI+ S + I +  Y   L I 
Sbjct: 253 RRQSLALRGKRMELFCIYGGTPLPQTVWSK------DGQRIQWSDR-ITQGHYGKSLVIR 305

Query: 169 NPTKDDGGNYRCNACNSIGESNA-NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM 227
               DD G Y C+  N +G + + +I LN           P F ++P I        +  
Sbjct: 306 QTNFDDAGTYTCDVSNGVGNAQSFSIILNVNS-------VPYFTKEPEIATAAEDEEVVF 358

Query: 228 KCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
           +C+ +  P P++ W    K +++S+      N +    +    I + +  D+G Y CN  
Sbjct: 359 ECRAAGVPEPKISWIHNGKPIEQSTP-----NPRRTVTDNTIRIINLVKGDTGNYGCNAT 413

Query: 288 NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
           N  G    ++ LN++AE      PPT  E P   S   G+ V ++C+V   P P + W  
Sbjct: 414 NSLGYVYKDVYLNVQAE------PPTISEAPAAVSTVDGRNVTIKCRVNGSPKPLVKWLR 467

Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM 407
               L       +NV   GD     LE++D    D G Y C  +N  GE+ A+ +L ++ 
Sbjct: 468 ASNWLTGG---RYNVQANGD-----LEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVKE 519

Query: 408 VRFIKYRVRSNKGIVGKMGLVKTRSYHRD 436
              I    ++ +   G+    +    H D
Sbjct: 520 HTRITQEPQNYEVAAGQSATFRCNEAHDD 548

The long isoform may play a role in neural and glial cell adhesion in the developing embryo. The short isoform may be a more general cell adhesion molecule involved in other tissues and imaginal disk morphogenesis. Vital for embryonic development. Essential for septate junctions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Required for the blood-brain barrier formation.

Drosophila melanogaster (taxid: 7227)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 180/460 (39%), Gaps = 92/460 (20%)

Query: 58   LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK---PTIH 114
            L I  V K DSG+Y   A N  G+   +  L+  E            P+F KK     + 
Sbjct: 7255 LRILKVGKGDSGQYTCQATNDVGKDMCSAQLSVKE-----------PPKFVKKLEASKVA 7303

Query: 115  QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
            + G+ + +EC +  SP   + W++    + ++ +  MS  +      +  L IN  + +D
Sbjct: 7304 KQGESIQLECKISGSPEIKVSWFRNDSELHESWKYNMSFIN-----SVALLTINEASAED 7358

Query: 175  GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
             G+Y C A N +G+++ + AL  +         P F +KP  +    G+ + ++C+ S  
Sbjct: 7359 SGDYICEAHNGVGDASCSTALTVKA-------PPVFTQKPSPVGALKGSDVILQCEISGT 7411

Query: 235  PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
            P  EV W K  K V+ S K KI     D +  I+    +    D G Y C   NE G   
Sbjct: 7412 PPFEVVWVKDRKQVRNSKKFKITSKHFDTSLHIL----NLEASDVGEYHCKATNEVGSDT 7467

Query: 295  ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354
             + ++  +       +PP F++K    S   G  V +   V+      +VW    K+  +
Sbjct: 7468 CSCSVKFK-------EPPRFVKKLSDTSTLIGDAVELRAIVEGFQPISVVWL---KDRGE 7517

Query: 355  TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG--ELNANLTLNIEMVRFIK 412
              R S N  +        L++  P   ++G Y C IKN  G  E +A LT+ +E  R I 
Sbjct: 7518 VIRESENTRISFIDNIATLQLGSPEASNSGKYICQIKNDAGMRECSAVLTV-LEPARII- 7575

Query: 413  YRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTV 472
                                                          E P+ +T++     
Sbjct: 7576 ----------------------------------------------EKPEPMTVTTGNPF 7589

Query: 473  VIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
             +EC V    E S  W K+   +  D+KH  HI  +  V+
Sbjct: 7590 ALECVVTGTPELSAKWFKDGRELSADSKH--HITFINKVA 7627

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2

 Score =  105 bits (263), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 196/511 (38%), Gaps = 111/511 (21%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
           EG PT  IE       Y  G  ++    D  S  ++     L++L ++  +   K D G 
Sbjct: 55  EGRPTPTIE------WYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRR-SKPDEGS 107

Query: 71  YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQDGDLLVMEC-VLE 127
           Y  +A+N  GE    V+ N S E   L+        F + PT  +   G+  ++EC    
Sbjct: 108 YVCVARNYLGEA---VSRNASLEVALLR------DDFRQNPTDVVVAAGEPAILECQPPR 158

Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
             P P I W +    I+D    K  + SI       +L I+N  K D G Y C   N +G
Sbjct: 159 GHPEPTIYWKKDKVRIDD----KEERISIRGG----KLMISNTRKSDAGMYTCVGTNMVG 210

Query: 188 ESNANIALNFQGGENGAGFAPSFIEKP--RIIPNESGTLIQMKCKCSAKPRPEVKWFKAD 245
           E +++ A      E      P+F+ +P  +++  E    ++ +C+    P+P V+W K D
Sbjct: 211 ERDSDPA------ELTVFERPTFLRRPINQVVLEEEA--VEFRCQVQGDPQPTVRWKKDD 262

Query: 246 K-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
             L +    IK       D Y +   I   +  D GTY C  +N  G+  A+  L + A 
Sbjct: 263 ADLPRGRYDIK-------DDYTL--RIKKTMSTDEGTYMCIAENRVGKMEASATLTVRA- 312

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE--------LQQTD 356
                 PP F+ +P+ +    G+ V   C+ K  P P + W  EG +         Q   
Sbjct: 313 ------PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNS 366

Query: 357 RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVR 416
           R S  V+  GD     L + + ++ D G Y C      G + A   L +           
Sbjct: 367 RCS--VSPTGD-----LTITNIQRSDAGYYICQALTVAGSILAKAQLEVT---------- 409

Query: 417 SNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIEC 476
                                          VLT    P+I + P   T++   T +++C
Sbjct: 410 ------------------------------DVLTDRPPPIILQGPANQTLAVDGTALLKC 439

Query: 477 KVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           K      P ++W+KE  T    +      EQ
Sbjct: 440 KATGDPLPVISWLKEGFTFPGRDPRATIQEQ 470

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Homo sapiens (taxid: 9606)

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2

 Score =  102 bits (254), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 195/500 (39%), Gaps = 111/500 (22%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
           EG PT  IE       Y  G  ++    D  S  ++     L++L ++  +   K D G 
Sbjct: 55  EGRPTPTIE------WYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRR-SKPDEGS 107

Query: 71  YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQDGDLLVMEC-VLE 127
           Y  +A+N  GE    V+ N S E   L+        F + PT  +   G+  ++EC    
Sbjct: 108 YVCVARNYLGEA---VSRNASLEVALLR------DDFRQNPTDVVVAAGEPAILECQPPR 158

Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
             P P I W +    I+D    K  + SI       +L I+N  K D G Y C   N +G
Sbjct: 159 GHPEPTIYWKKDKVRIDD----KEERISIRGG----KLMISNTRKSDAGMYTCVGTNMVG 210

Query: 188 ESNANIALNFQGGENGAGFAPSFIEKP--RIIPNESGTLIQMKCKCSAKPRPEVKWFKAD 245
           E +++ A      E      P+F+ +P  +++  E    ++ +C+    P+P V+W K D
Sbjct: 211 ERDSDPA------ELTVFERPTFLRRPINQVVLEEEA--VEFRCQVQGDPQPTVRWKKDD 262

Query: 246 K-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG--ESNANLNLNIE 302
             L +    IK       D Y +   I   +  D GTY C  +N  G  E++A L + + 
Sbjct: 263 ADLPRGRYDIK-------DDYTL--RIKKAMSTDEGTYVCIAENRVGKVEASATLTVRVR 313

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE--------LQQ 354
             A     PP F+ +P+ +    G+ V   C+ K  P P + W  EG +         Q 
Sbjct: 314 PVA-----PPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQP 368

Query: 355 TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYR 414
             R S  V+  GD     L + + ++ D G Y C      G + A   L +         
Sbjct: 369 NSRCS--VSPTGD-----LTITNIQRSDAGYYICQALTVAGSILAKAQLEVT-------- 413

Query: 415 VRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVI 474
                                            VLT    P+I + P   T++   T ++
Sbjct: 414 --------------------------------DVLTDRPPPIILQGPINQTLAVDGTALL 441

Query: 475 ECKVMSMYEPSVTWMKEKNT 494
           +CK      P ++W+KE  T
Sbjct: 442 KCKATGEPLPVISWLKEGFT 461

Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development.

Mus musculus (taxid: 10090)

>sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1

 Score =  102 bits (254), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 152/379 (40%), Gaps = 59/379 (15%)

Query: 46  VQDQSR--LYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGG 102
           +QD  R  L+    L I  V +SDSG Y+ +A N  GE  S+   L+  E+         
Sbjct: 176 IQDMPRYTLHSDGNLIIDPVDRSDSGTYQCVANNMVGERVSNPARLSVFEK--------- 226

Query: 103 KAPRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
             P+F   PK  T+   G  ++ +C +   P P I W +  + +       +++  I KD
Sbjct: 227 --PKFEQEPKDMTVDV-GAAVLFDCRVTGDPQPQITWKRKNEPM------PVTRAYIAKD 277

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
              LR+E   P+  D G Y C A N  G   A+  L  Q         PSF  KP     
Sbjct: 278 NRGLRIERVQPS--DEGEYVCYARNPAGTLEASAHLRVQA-------PPSFQTKPADQSV 328

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADK-------LVKESSKIKIIVNEQDDTYEIICEIT 272
            +G     +C    +P P   W K  +        V    + K+       T  +  E  
Sbjct: 329 PAGGTATFECTLVGQPSPAYFWSKEGQQDLLFPSYVSADGRTKV-----SPTGTLTIEEV 383

Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA----EPEGDPPTFIEKPKIRSEQGGKL 328
             +  D G Y C   N  G S +   L +  +A     P   PPT     + ++   G  
Sbjct: 384 RQV--DEGAYVCAGMNSAGSSLSKAALKVTTKAVTGNTPAKPPPTIEHGHQNQTLMVGSS 441

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
            ++ C+   KP P I W  +G  +  TD RIS + T         L + D +K DTG+Y 
Sbjct: 442 AILPCQASGKPTPGISWLRDGLPIDITDSRISQHSTGS-------LHIADLKKPDTGVYT 494

Query: 388 CNIKNFHGELNANLTLNIE 406
           C  KN  GE   + +L +E
Sbjct: 495 CIAKNEDGESTWSASLTVE 513

Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance.

Caenorhabditis elegans (taxid: 6239)

>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 199/509 (39%), Gaps = 109/509 (21%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
           EG PT  IE       Y  G  ++    D  S  ++     L++L ++  +   + D G 
Sbjct: 53  EGRPTPTIE------WYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPDEGV 105

Query: 71  YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQDGDLLVMEC-VLE 127
           Y  +A+N  GE    V+ N S E   L+        F + P+  +   G+  VMEC    
Sbjct: 106 YICVARNYLGEA---VSHNASLEVAILRD------DFRQNPSDVMVAVGEPAVMECQPPR 156

Query: 128 ASPMPDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186
             P P I W +    ++D   RI +            +L I    K D G Y C   N +
Sbjct: 157 GHPEPTISWKKDGSPLDDKDERITIRGG---------KLMITYTRKSDAGKYVCVGTNMV 207

Query: 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD- 245
           GE  + +A      E      PSF+++P  +        + KC+    P P V+W K D 
Sbjct: 208 GERESEVA------ELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDG 261

Query: 246 KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305
           +L K   +I+      DD    I ++T     D G+Y C  +N  G++ A+  L ++   
Sbjct: 262 ELPKSRYEIR------DDHTLKIRKVT---AGDMGSYTCVAENMVGKAEASATLTVQ--- 309

Query: 306 EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE--------LQQTDR 357
               +PP F+ KP+ +    G+ V  +C+    P P I W  EG +         Q + R
Sbjct: 310 ----EPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSR 365

Query: 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
            S  V+  GD     L + + ++ D G Y C             TLN+            
Sbjct: 366 FS--VSQTGD-----LTITNVQRSDVGYYICQ------------TLNV------------ 394

Query: 418 NKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECK 477
                   G + T++Y          +   V+     PVIR+ P   T++   T+++ C 
Sbjct: 395 -------AGSIITKAY---------LEVTDVIADRPPPVIRQGPVNQTVAVDGTLILSCV 438

Query: 478 VMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
                 P++ W K+   V   +  +  +E
Sbjct: 439 ATGSPAPTILWRKDGVLVSTQDSRIKQLE 467

Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
325071195	972	projectin short variant [Libellula pulch	0.822	0.456	0.566	1e-154
325071197	1174	projectin long variant [Libellula pulche	0.829	0.381	0.562	1e-153
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.822	0.050	0.570	1e-150
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.822	0.051	0.566	1e-150
350413804	8700	PREDICTED: twitchin-like [Bombus impatie	0.822	0.051	0.568	1e-149
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.822	0.051	0.562	1e-148
383852204	8627	PREDICTED: twitchin-like [Megachile rotu	0.822	0.051	0.562	1e-148
345486445	8816	PREDICTED: twitchin-like [Nasonia vitrip	0.837	0.051	0.541	1e-147
325071189	1444	projectin [Pediculus humanus]	0.818	0.306	0.528	1e-147
242010244	8829	titin, putative [Pediculus humanus corpo	0.820	0.050	0.525	1e-145

>gi|325071195|gb|ADY75708.1| projectin short variant [Libellula pulchella]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/494 (56%), Positives = 356/494 (72%), Gaps = 50/494 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH  +++    R   TL QDQ +LYY+A L I NV+  D GEYK +AKNK+GEG +T
Sbjct: 258 VTWYHGSTVISDGGRFKVTLTQDQ-KLYYMARLDIVNVENGDGGEYKAVAKNKHGEGVAT 316

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF E  GK K+P GKAPRFPKKPTI Q+GD+LVMEC+LEA+P+P+I WYQG KVI D
Sbjct: 317 INLNF-EGGGKPKIPDGKAPRFPKKPTIRQEGDILVMECILEANPLPEITWYQGVKVISD 375

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN-GA 204
           + R+K+S+KS GKDTYLL LEI+NPTK+DGGNYRCNA NS GESNANIALNFQGG++  A
Sbjct: 376 SNRVKISRKSTGKDTYLLTLEISNPTKEDGGNYRCNAFNSFGESNANIALNFQGGDDSAA 435

Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDD 263
           GFAP+F+EKP+IIPNESGTLI M+CKC A P+P V W++   +VKESSKIKI  +  + D
Sbjct: 436 GFAPTFVEKPKIIPNESGTLITMRCKCKANPKPVVTWYRKTTVVKESSKIKIKTIELEQD 495

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
           TYE+  EITDP G D GTYRC+VKNE GESNANLNLNIEAE EPEG+ PTF+EKP+I SE
Sbjct: 496 TYELTLEITDPAGSDGGTYRCHVKNEHGESNANLNLNIEAEPEPEGEGPTFVEKPRIISE 555

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
           + GKLV+MECKVK+ P P +VW+H+G+ ++++ +IS ++      Y+I+LE+KDP +ED+
Sbjct: 556 RNGKLVIMECKVKSDPKPTVVWYHDGQVVKESSKISISIQQTASVYYIKLELKDPVQEDS 615

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           GLYKCNIKN  GELNANLTLNIE+V                                   
Sbjct: 616 GLYKCNIKNTFGELNANLTLNIEIV----------------------------------- 640

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                      PVI++ PKV+ + KKKT+V+EC V+S +EP  TW KEK  +KED++H V
Sbjct: 641 -----------PVIKDKPKVIRVVKKKTIVVECIVVSKFEPKCTWFKEKTAIKEDSRHSV 689

Query: 504 HIEQVKDVSMNFEL 517
            +E+VK+     +L
Sbjct: 690 KVERVKEGEFAVKL 703

Source: Libellula pulchella

Species: Libellula pulchella

Genus: Libellula

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071197|gb|ADY75709.1| projectin long variant [Libellula pulchella]

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/498 (56%), Positives = 358/498 (71%), Gaps = 50/498 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           YH  +++    R   TL QDQ +LYY+A L I NV+  D GEYK +AKNK+GEG +T+NL
Sbjct: 261 YHGSTVISDGGRFKVTLTQDQ-KLYYMARLDIVNVENGDGGEYKAVAKNKHGEGVATINL 319

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
           NF E  GK K+P GKAPRFPKKPTI Q+GD+LVMEC+LEA+P+P+I WYQG KVI D+ R
Sbjct: 320 NF-EGGGKPKIPDGKAPRFPKKPTIRQEGDILVMECILEANPLPEITWYQGVKVISDSNR 378

Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN-GAGFA 207
           +K+S+KS GKDTYLL LEI+NPTK+DGGNYRCNA NS GESNANIALNFQGG++  AGFA
Sbjct: 379 VKISRKSTGKDTYLLTLEISNPTKEDGGNYRCNAFNSFGESNANIALNFQGGDDSAAGFA 438

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDDTYE 266
           P+F+EKP+IIPNESGTLI M+CKC A P+P V W++   +VKESSKIKI  +  + DTYE
Sbjct: 439 PTFVEKPKIIPNESGTLITMRCKCKANPKPVVTWYRKTTVVKESSKIKIKTIELEQDTYE 498

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
           +  EITDP G D GTYRC+VKNE GESNANLNLNIEAE EPEG+ PTF+EKP+I SE+ G
Sbjct: 499 LTLEITDPAGSDGGTYRCHVKNEHGESNANLNLNIEAEPEPEGEGPTFVEKPRIISERNG 558

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           KLV+MECKVK+ P P +VW+H+G+ ++++ +IS ++      Y+I+LE+KDP +ED+GLY
Sbjct: 559 KLVIMECKVKSDPKPTVVWYHDGQVVKESSKISISIQQTASVYYIKLELKDPVQEDSGLY 618

Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKY 446
           KCNIKN  GELNANLTLNIE+V                                      
Sbjct: 619 KCNIKNTFGELNANLTLNIEIV-------------------------------------- 640

Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
                   PVI++ PKV+ + KKKT+V+EC V+S +EP  TW KEK  +KED++H V +E
Sbjct: 641 --------PVIKDKPKVIRVVKKKTIVVECIVVSKFEPKCTWFKEKTAIKEDSRHSVKVE 692

Query: 507 QVKDVSMNFELWLGIVEK 524
           +VK+     +L +   ++
Sbjct: 693 RVKEGEFAVKLEISSAQQ 710

Source: Libellula pulchella

Species: Libellula pulchella

Genus: Libellula

Family: Libellulidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/494 (57%), Positives = 345/494 (69%), Gaps = 50/494 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH    +K   R S +L  DQ +LY+LA L I NV K D+GEY+ +AKNK+G+G +T
Sbjct: 257 VKWYHGSEEVKEGGRYSMSLELDQ-KLYHLARLKIDNVAKGDAGEYRAVAKNKHGQGVAT 315

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+PDI WYQG K I D
Sbjct: 316 INLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPVPDITWYQGQKAITD 374

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + R+KMS+K+ GKDTYLL LEI+NPTK DGGNYRCNA N+ GESNANI+LNFQ  E G G
Sbjct: 375 SKRVKMSRKATGKDTYLLTLEISNPTKADGGNYRCNAFNNFGESNANISLNFQDAEEGPG 434

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDT 264
           FAP+F+EKPRIIPNE+GTLI MKCKC A P+PEV WF+   +VKESSKI I     ++D 
Sbjct: 435 FAPTFVEKPRIIPNETGTLITMKCKCKANPKPEVTWFRGTNVVKESSKISIKTKTVEEDV 494

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
           YE+I EI DP  PD GTYRC+VKNE+GESNANLNLNIEAE EPEGD PTF+EKP+I+S+ 
Sbjct: 495 YELIMEIKDPSAPDGGTYRCHVKNEYGESNANLNLNIEAEPEPEGDGPTFVEKPRIQSQN 554

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDT 383
            GKLV+M+CKVKA P PEIVW H GK ++++ +IS +V   K D Y+I+L + DP  ED+
Sbjct: 555 QGKLVIMDCKVKANPKPEIVWTHAGKVVKESSKISISVVKEKEDIYYIKLTLNDPGPEDS 614

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           GLYKCNIKN  GELNANLTLN+E++                                   
Sbjct: 615 GLYKCNIKNDLGELNANLTLNVEII----------------------------------- 639

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                      PVI+E PKV+ I KKKTV++EC V+S + P  TW KE   VKED +H V
Sbjct: 640 -----------PVIKEKPKVIKIVKKKTVIVECHVLSKFTPDCTWFKETKAVKEDTRHKV 688

Query: 504 HIEQVKDVSMNFEL 517
           HIEQVKD     +L
Sbjct: 689 HIEQVKDGEFAVKL 702

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/494 (56%), Positives = 345/494 (69%), Gaps = 50/494 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH    LK   R   +L  DQ +LY+LA L I NV K D+GEY+ +AKNK+G+G +T
Sbjct: 257 VKWYHGSEELKEDGRYRMSLELDQ-KLYHLARLRIDNVAKGDAGEYRAVAKNKHGQGVAT 315

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+PDI WYQG K I D
Sbjct: 316 INLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPVPDITWYQGQKTITD 374

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + R+KMS+K+ GKDTYLL LEI+NPTK DGGNYRCNA N+ GESNANI+LNFQ  E G G
Sbjct: 375 SKRVKMSRKATGKDTYLLTLEISNPTKADGGNYRCNAFNNFGESNANISLNFQDTEEGPG 434

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDT 264
           FAP+F+EKPRIIPNE+GTLI MKCKC A P+PEV WF+   +VKESSKI I     ++D 
Sbjct: 435 FAPTFVEKPRIIPNETGTLITMKCKCKANPKPEVTWFRGANVVKESSKISIKTKTVEEDV 494

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
           YE+I EI DP  PD GTYRC+VKNE+GESNANLNLNIEAE EPEGD PTF+EKP+I+S+ 
Sbjct: 495 YELIMEIKDPSAPDGGTYRCHVKNEYGESNANLNLNIEAEPEPEGDGPTFVEKPRIQSQN 554

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDT 383
            GKLV+M+CKVKA P PEIVW H GK ++++ +IS ++   K D Y+I+L + DP  ED+
Sbjct: 555 QGKLVIMDCKVKANPKPEIVWTHAGKIVKESSKISISIVQEKQDIYYIKLTLNDPGAEDS 614

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           GLYKCNIKN  GELNANLTLN+E                                     
Sbjct: 615 GLYKCNIKNALGELNANLTLNVE------------------------------------- 637

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                    ++PVI+E PKVV I KK+TV++EC V+S + P  TW KE N VK DN+H V
Sbjct: 638 ---------IIPVIKEKPKVVKIVKKRTVIVECHVLSKFTPECTWFKETNAVKADNRHKV 688

Query: 504 HIEQVKDVSMNFEL 517
           H+EQVK+     +L
Sbjct: 689 HVEQVKEGEFAVKL 702

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413804|ref|XP_003490119.1| PREDICTED: twitchin-like [Bombus impatiens]

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/494 (56%), Positives = 344/494 (69%), Gaps = 50/494 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH    +K   R S +L  DQ +LY+LA L I NV K D+GEY+ +AKNK+G+G +T
Sbjct: 345 VKWYHGSEEVKEGGRYSMSLELDQ-KLYHLARLKIDNVAKGDAGEYRAVAKNKHGQGVAT 403

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+PDI WYQG K I D
Sbjct: 404 INLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPVPDITWYQGQKAITD 462

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + R+KMS+K+ GKD YLL LEI+NPTK DGGNYRCNA N+ GESNANI+LNFQ  E G G
Sbjct: 463 SKRVKMSRKATGKDAYLLTLEISNPTKADGGNYRCNAFNNFGESNANISLNFQDAEEGPG 522

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDT 264
           FAP+F+EKPRIIPNE+GTLI MKCKC A P+PEV WF+   +VKESSKI I     ++D 
Sbjct: 523 FAPTFVEKPRIIPNETGTLITMKCKCKANPKPEVTWFRGTNVVKESSKISIKTKTVEEDV 582

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
           YE+I EI DP  PD GTYRC+VKNE+GESNANLNLNIEAE EPEGD PTF+EKP+I+S+ 
Sbjct: 583 YELIMEIKDPSAPDGGTYRCHVKNEYGESNANLNLNIEAEPEPEGDGPTFVEKPRIQSQN 642

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDT 383
            GKLV+M+CKVKA P PEIVW H GK ++++ +IS +V   K D Y+I+L + DP  ED+
Sbjct: 643 QGKLVIMDCKVKANPKPEIVWTHAGKVVKESSKISISVVKEKEDIYYIKLTLNDPGPEDS 702

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           GLYKCNIKN  GELNANLTLN+E++                                   
Sbjct: 703 GLYKCNIKNDLGELNANLTLNVEII----------------------------------- 727

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                      PVI+E PKV+ I KKKTV++EC V+S + P  TW KE   VKED +H V
Sbjct: 728 -----------PVIKEKPKVIKIVKKKTVIVECHVLSKFTPDCTWFKETKAVKEDTRHKV 776

Query: 504 HIEQVKDVSMNFEL 517
           HIEQVKD     +L
Sbjct: 777 HIEQVKDGEFAVKL 790

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 280/498 (56%), Positives = 346/498 (69%), Gaps = 54/498 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH    LK S R   +L  DQ +LY+LA L I NV K D+GEY+ +AKNK+G+G +T
Sbjct: 257 VKWYHGSEELKESGRYRMSLELDQ-KLYHLARLRIDNVAKGDAGEYRAVAKNKHGQGVAT 315

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+PDI WYQG K I D
Sbjct: 316 INLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPVPDITWYQGQKTITD 374

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG----E 201
           + R+KMS+K+ GKDTYLL LEI+NPTK DGGNYRCNA N+ GESNANI+LNFQG      
Sbjct: 375 SKRVKMSRKATGKDTYLLTLEISNPTKADGGNYRCNAFNNFGESNANISLNFQGKSSSES 434

Query: 202 NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE- 260
           +G GFAP+F+EKPRIIPNE+GTLI MKCKC A P+PEV WF+   +VKESSKI I     
Sbjct: 435 DGPGFAPTFVEKPRIIPNETGTLITMKCKCKANPKPEVTWFRGASVVKESSKIXIKTKTV 494

Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
           ++D YE+I EI DP  PD GTYRC+VKNE+GESNANLNLNIEAE EPEGD PTF+EKP+I
Sbjct: 495 EEDVYELIMEIKDPSAPDGGTYRCHVKNEYGESNANLNLNIEAEPEPEGDGPTFVEKPRI 554

Query: 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPR 379
           +S+  GKLV+M+CKVKA P PEIVW H GK ++++ +IS ++   K D Y+I+L + DP 
Sbjct: 555 QSQNQGKLVIMDCKVKANPKPEIVWTHAGKIVKESSKISISIVQEKQDIYYIKLTLNDPG 614

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
            ED+GLYKCNIKN  GELNANLTLN+E                                 
Sbjct: 615 AEDSGLYKCNIKNALGELNANLTLNVE--------------------------------- 641

Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
                        ++PVI+E PKVV I KK+TV++EC V+S + P  TW KE   VK DN
Sbjct: 642 -------------IIPVIKEKPKVVKIVKKRTVIVECHVLSKFTPECTWFKETKAVKADN 688

Query: 500 KHVVHIEQVKDVSMNFEL 517
           +H VH+EQVK+     +L
Sbjct: 689 RHKVHVEQVKEGEFAVKL 706

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852204|ref|XP_003701618.1| PREDICTED: twitchin-like [Megachile rotundata]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/494 (56%), Positives = 344/494 (69%), Gaps = 50/494 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH    +K   R   +L  DQ +LY+LA L I NV K D+GEY+ +AKNK+G+G +T
Sbjct: 257 VKWYHGTEEVKEGGRFGMSLELDQ-KLYHLARLRIDNVAKGDAGEYRAVAKNKHGQGVAT 315

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+PDI WYQG K I D
Sbjct: 316 INLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPVPDITWYQGQKSISD 374

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + R+KMS+K+ GKDTYLL LEI+NPTK DGGNYRCNA N+ GESNANI+LNFQ  E G G
Sbjct: 375 SKRVKMSRKATGKDTYLLTLEISNPTKADGGNYRCNAFNNFGESNANISLNFQDAEEGPG 434

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDT 264
           FAP+F+EKPRIIPNE+GTLI MKCKC A P+PEV WF+   +VKESSKI I     ++D 
Sbjct: 435 FAPTFVEKPRIIPNETGTLITMKCKCKANPKPEVTWFRGTNVVKESSKISIKTKTVEEDV 494

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
           YE+I EI DP  PD GTYRC+V+NE+GESNANLNLNIEAE EPEGD PTF+EKP+I+S+ 
Sbjct: 495 YELIMEIKDPSAPDGGTYRCHVQNEYGESNANLNLNIEAEPEPEGDGPTFVEKPRIQSQN 554

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDT 383
            GKLV+M+CKVKA P PEIVW H G  ++Q+ +IS ++   K D Y+I+L + DP  ED+
Sbjct: 555 QGKLVIMDCKVKANPKPEIVWTHAGAVVKQSSKISISIVQEKEDIYYIKLSLSDPGPEDS 614

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           GLYKCNIKN  GELNANLTLN+E                                     
Sbjct: 615 GLYKCNIKNALGELNANLTLNVE------------------------------------- 637

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                    ++PVI+E PKVV I KKKTV++EC V+S + P  TW KE   VKED++H V
Sbjct: 638 ---------IIPVIKEKPKVVKIVKKKTVIVECHVLSKFTPDCTWFKETQAVKEDSRHKV 688

Query: 504 HIEQVKDVSMNFEL 517
           H+EQVK+     +L
Sbjct: 689 HVEQVKEGEFAVKL 702

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/508 (54%), Positives = 353/508 (69%), Gaps = 56/508 (11%)

Query: 12  LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEY 71
           L G+P   ++       YH    L    R   ++  DQ +LY+LA L I  V K+DSGEY
Sbjct: 249 LAGDPKPSVK------WYHGTEELSEGGRYQMSMELDQ-KLYHLARLQISKVAKADSGEY 301

Query: 72  KVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPM 131
           K +A+NK+G+G +T+NLNF   D KLK+P GK PRFPKKPTI Q+GD+L+MEC+LEA P+
Sbjct: 302 KAVARNKHGQGVATINLNFEGGD-KLKIPDGKPPRFPKKPTIRQEGDVLIMECILEAHPV 360

Query: 132 PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191
           P+I WYQG+K I D+ RIKMS+KS GKDTYLL LEI NPTK DGG+YRCNA N+ GESNA
Sbjct: 361 PEITWYQGSKAITDSTRIKMSRKSTGKDTYLLTLEILNPTKADGGHYRCNAFNNFGESNA 420

Query: 192 NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES 251
           NI+LNFQG E+ AGFAPSFIEKPRIIPNE+GTLI MKCKC AKP+P+V WF+A  ++KES
Sbjct: 421 NISLNFQGAEDPAGFAPSFIEKPRIIPNETGTLITMKCKCRAKPKPDVTWFRATNVIKES 480

Query: 252 SKIKI-IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD 310
           SKI +  ++ Q+D YE+  E+ DP GPD G YRC+VKNEFGESNANLNLNIEAE EPEGD
Sbjct: 481 SKISLKCIDVQEDVYELTLELKDPAGPDGGAYRCHVKNEFGESNANLNLNIEAEPEPEGD 540

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT-LKGDKY 369
            PTF+EKP+I+S+  GK+V+M+CKVKAKP P IVW H G  ++++ +IS +V   K D Y
Sbjct: 541 GPTFVEKPRIQSQDKGKVVIMDCKVKAKPKPNIVWTHAGTVVKESSKISLSVVEEKNDIY 600

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
           +I+L + DP  +D+GLYKCNIKN  GELNANLTLN+E++                     
Sbjct: 601 YIKLVLNDPGADDSGLYKCNIKNSLGELNANLTLNVEII--------------------- 639

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                                    PVI+E PKV+ I KKKTV++EC V+S + P  TW 
Sbjct: 640 -------------------------PVIKEKPKVIKIVKKKTVIVECTVLSKFAPDCTWF 674

Query: 490 KEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
           KE   V++D++H +H+E++K+     +L
Sbjct: 675 KETQAVRQDDRHKLHVEKIKEGEFAVKL 702

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071189|gb|ADY75705.1| projectin [Pediculus humanus]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/492 (52%), Positives = 339/492 (68%), Gaps = 50/492 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           YH  +L++   R  ++L  DQ +LY++A L I NV+ +D GEYK IAKN +GEG +T+NL
Sbjct: 260 YHGKTLIQEGGRYKTSLTLDQ-KLYHMARLEISNVENADGGEYKAIAKNVHGEGVATINL 318

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
           NF E   K K+P GK PRFPKKPTI QDG+ L+MECVLEA P+PDI W+QGTK I D+ R
Sbjct: 319 NF-EGGEKPKIPDGKPPRFPKKPTIRQDGETLIMECVLEAKPLPDITWFQGTKKISDSNR 377

Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP 208
           ++MS+K+ GKDTYLL LEI +PTK+DGGNYRCNA N  GESNANI+LNFQGG++  GFAP
Sbjct: 378 VRMSRKATGKDTYLLTLEIISPTKEDGGNYRCNAFNCFGESNANISLNFQGGDD-EGFAP 436

Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDTYEI 267
           +F++KP+IIP+++G+LI MKCKC AKP P V W++   +VKESSKIK+   E  +D YE+
Sbjct: 437 TFVDKPKIIPSDTGSLITMKCKCKAKPAPVVTWYRETAVVKESSKIKMKTIELGEDVYEL 496

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
           I EI DP   D GTY+CN KN++GESNANLNLNIEA+ EPEG  P F++KP+I SEQ GK
Sbjct: 497 ILEIQDPTNSDGGTYKCNAKNDYGESNANLNLNIEADQEPEGREPIFVQKPRIVSEQNGK 556

Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
           LVVM+C V+A P P IVW+H  K ++++ +++ ++  K + Y+IRLE+KDP K D+GLYK
Sbjct: 557 LVVMDCSVRADPAPTIVWYHGQKIVEKSSKVTISIEKKEEIYYIRLELKDPNKTDSGLYK 616

Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
           CNIKN +GELNANLTLN+E+V  IK                                   
Sbjct: 617 CNIKNQYGELNANLTLNVEIVPVIK----------------------------------- 641

Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
                      E PK+  + KK+TV+IEC+V S + P  TW KE   +KED+ H V IEQ
Sbjct: 642 -----------EKPKITKVVKKRTVIIECRVQSSFTPQCTWFKETKAIKEDSNHTVQIEQ 690

Query: 508 VKDVSMNFELWL 519
            K+   N +L +
Sbjct: 691 TKEGEFNVKLQI 702

Source: Pediculus humanus

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010244|ref|XP_002425880.1| titin, putative [Pediculus humanus corporis] gi|212509846|gb|EEB13142.1| titin, putative [Pediculus humanus corporis]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/493 (52%), Positives = 339/493 (68%), Gaps = 50/493 (10%)

Query: 26  MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           +  YH  +L++   R  ++L  DQ +LY++A L I NV+ +D GEYK IAKN +GEG +T
Sbjct: 257 ITWYHGKTLIQEGGRYKTSLTLDQ-KLYHMARLEISNVENADGGEYKAIAKNVHGEGVAT 315

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           +NLNF E   K K+P GK PRFPKKPTI QDG+ L+MECVLEA P+PDI W+QGTK I D
Sbjct: 316 INLNF-EGGEKPKIPDGKPPRFPKKPTIRQDGETLIMECVLEAKPLPDITWFQGTKKISD 374

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + R++MS+K+ GKDTYLL LEI +PTK+DGGNYRCNA N  GESNANI+LNFQGG++  G
Sbjct: 375 SNRVRMSRKATGKDTYLLTLEIISPTKEDGGNYRCNAFNCFGESNANISLNFQGGDD-EG 433

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDDT 264
           FAP+F++KP+IIP+++G+LI MKCKC AKP P V W++   +VKESSKIK+  +   +D 
Sbjct: 434 FAPTFVDKPKIIPSDTGSLITMKCKCKAKPAPVVTWYRETAVVKESSKIKMKTIELGEDV 493

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
           YE+I EI DP   D GTY+CN KN++GESNANLNLNIEA+ EPEG  P F++KP+I SEQ
Sbjct: 494 YELILEIQDPTNSDGGTYKCNAKNDYGESNANLNLNIEADQEPEGREPIFVQKPRIVSEQ 553

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
            GKLVVM+C V+A P P IVW+H  K ++++ +++ ++  K + Y+IRLE+KDP K D+G
Sbjct: 554 NGKLVVMDCSVRADPAPTIVWYHGQKIVEKSSKVTISIEKKEEIYYIRLELKDPNKTDSG 613

Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
           LYKCNIKN +GELNANLTLN+E+V  IK                                
Sbjct: 614 LYKCNIKNQYGELNANLTLNVEIVPVIK-------------------------------- 641

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
                         E PK+  + KK+TV+IEC+V S + P  TW KE   +KED+ H V 
Sbjct: 642 --------------EKPKITKVVKKRTVIIECRVQSSFTPQCTWFKETKAIKEDSNHTVQ 687

Query: 505 IEQVKDVSMNFEL 517
           IEQ K+   N +L
Sbjct: 688 IEQTKEGEFNVKL 700

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.731	0.044	0.572	2.5e-125
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.346	0.026	0.430	1.1e-44
WB|WBGene00001000	640	dim-1 [Caenorhabditis elegans	0.553	0.467	0.320	1.5e-40
WB|WBGene00006820	8081	unc-89 [Caenorhabditis elegans	0.670	0.044	0.258	1.2e-23
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.6	9.529	0.265	2.1e-16
FB|FBgn0053519	4218	Unc-89 "Unc-89" [Drosophila me	0.522	0.066	0.272	8.9e-21
WB|WBGene00006436	18	ttn-1 [Caenorhabditis elegans	0.675	20.27	0.263	2.1e-19
MGI|MGI:894806	1941	Mylk "myosin, light polypeptid	0.522	0.145	0.25	2.9e-17
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.6	9.257	0.265	7.3e-15
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.496	0.047	0.264	5.8e-19

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 1181 (420.8 bits), Expect = 2.5e-125, Sum P(2) = 2.5e-125
 Identities = 229/400 (57%), Positives = 287/400 (71%)

Query:    30 HKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
             H  + L  S+R   +L  DQ +LY++A L I +V  SD GEY+  AKNK+G G +T+NLN
Sbjct:   263 HGETELNESNRYKMSLTMDQ-KLYHIACLEISSVVSSDQGEYRAQAKNKHGSGVATINLN 321

Query:    90 FSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI 149
             F  E G  K+P GK+PRFPKKPTI Q+ DLL+MECVLEA P+PDI+WY   K I +  R 
Sbjct:   322 F--ESGSKKIPDGKSPRFPKKPTIRQEEDLLIMECVLEAHPVPDIVWYCSEKEICNNQRT 379

Query:   150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPS 209
             KM++K+I KD+Y+L LEI NPTK+DGGNYRCNA N  GESNANIALNFQG  +  GFAPS
Sbjct:   380 KMTRKAITKDSYILTLEIQNPTKEDGGNYRCNAINMYGESNANIALNFQGASDANGFAPS 439

Query:   210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDTYEII 268
             FIEKPRIIPNESGTLI MKCKC AKP P V W++   LV++S KIKI      +DTYE+ 
Sbjct:   440 FIEKPRIIPNESGTLITMKCKCKAKPEPTVTWYRGQDLVEKSKKIKINTTVIAEDTYELT 499

Query:   269 CEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKL 328
              EI DP   D GTYRCNVKNE+G               PEG+ PTFIEKP+I SE  GKL
Sbjct:   500 LEIKDPGATDGGTYRCNVKNEYGESNANLNLNIEAEPEPEGEGPTFIEKPRIVSENNGKL 559

Query:   329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
             V+MECKVKA P P+++WF  G+ ++++++I   +  +GD+Y+I+LE+ DP+ ED+GLYKC
Sbjct:   560 VIMECKVKADPKPDVIWFRNGEVIKESNKIKTFIEQRGDQYYIKLELLDPQLEDSGLYKC 619

Query:   389 NIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
             NIKN  GELNANLTLNIE+V  IK + +  K I+ K  +V
Sbjct:   620 NIKNTLGELNANLTLNIEIVPVIKDKPKIIK-IIKKRTVV 658

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 386 (140.9 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
 Identities = 83/193 (43%), Positives = 105/193 (54%)

Query:   104 APRFPKKPTIHQD--GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             APRF +KP+I Q   GDLL MEC LEA P P I W     ++E +GR+  +   +G   Y
Sbjct:     4 APRFTQKPSIQQTPTGDLL-MECHLEADPQPTIAWQHSGNLLEPSGRVVQTLTPLGGSLY 62

Query:   162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG--GENGAGFAPSFIEKPRIIPN 219
                L I  P   DGG Y+C A N +GESNANI LNF G  G+      PSF+ KPRIIP 
Sbjct:    63 KATLVIKEPNAGDGGAYKCTARNQLGESNANINLNFAGAGGDEAKSRGPSFVGKPRIIPK 122

Query:   220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ-DDTYEIICEITDPIGPD 278
             + G LI M+CK  +   P  KW K    +        I ++  D TY    EI  P   D
Sbjct:   123 DGGALIVMECKVKSASTPVAKWMKDGVPLSMGGLYHAIFSDLGDQTYLCQLEIRGPSSSD 182

Query:   279 SGTYRCNVKNEFG 291
             +G YRCN++N+ G
Sbjct:   183 AGQYRCNIRNDQG 195

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

WB|WBGene00001000 dim-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 433 (157.5 bits), Expect = 1.5e-40, P = 1.5e-40
 Identities = 103/321 (32%), Positives = 165/321 (51%)

Query:    99 VPGGKAPRFPKKPTIHQDGD-LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
             +P GKAP FP++P   Q+ D  L +EC ++A+P P + WY   K +E++GR   +  + G
Sbjct:   317 MPDGKAPHFPQQPVARQNDDGSLELECFVDANPTPQVKWYYDNKEVENSGRFSANLANKG 376

Query:   158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
              D+Y   L I      D G YRC   N  G+ NAN  L   G  +     P+F+EKP+I 
Sbjct:   377 SDSYSAILTIKELADADAGAYRCAIVNPHGKGNANFNLKLTGFSS-----PTFVEKPQIS 431

Query:   218 PNESGTLIQMKCKCSAKPRPEVKWFK-----ADKLVKESSKIKIIVN-EQDDTYEIICEI 271
               + G ++ M+ +  +   P   W K     A++++  S +IK +   E  + Y    EI
Sbjct:   432 SRDDGQVMVMEFRAKSILEPTFVWQKLVGGGAEEIIANSDRIKAVKKLEAGNVYYSALEI 491

Query:   272 TDPI-GPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKI--RSEQGGK- 327
              +P    D+G + C VKNE G               PEG  P+F  KP+I  ++  GG+ 
Sbjct:   492 KEPTKDKDAGQFICTVKNESGKLTATFTVKFEV---PEG-APSFTRKPQILQQTSAGGEP 547

Query:   328 LVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGL 385
              +  +    A+  P++ W   + K+++++ RI +    +G+  +  +LE+ + + +D+G 
Sbjct:   548 AICFDIGYSARMNPQVTWISPKSKKMKESSRIKFKTNDEGNGNFTAQLELTNYKAKDSGT 607

Query:   386 YKCNIKNFHGELNANLTLNIE 406
             Y CNIKN  GE N  LTLNIE
Sbjct:   608 YTCNIKNDAGEANVELTLNIE 628

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)]

 Score = 310 (114.2 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
 Identities = 102/395 (25%), Positives = 173/395 (43%)

Query:    45 LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104
             ++Q Q+ +   + LTI + ++ D G Y   A+N+ GE  +T N     +     +P    
Sbjct:  3431 VIQKQTAVGSFS-LTINDARQGDVGIYSCRARNEAGEALTTANFGIIRDS----IP---- 3481

Query:   105 PRFPKK--PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTY 161
             P F +K  P   ++ + L ++  +  +P+P++ W++  K I  D   I    +  G  T 
Sbjct:  3482 PEFTQKLRPLEVREQETLDLKVTVIGTPVPNVEWFKDDKPINIDNSHIFAKDEGSGHHT- 3540

Query:   162 LLRLEINNPTKDDGGNYRCNACNSIGESN--ANIALNFQGGENGAGFAPSFIEKPRIIPN 219
                L I     +D G Y C A N  GE+   AN+A+  +  E     AP F++  +    
Sbjct:  3541 ---LTIKQARGEDVGVYTCKATNEAGEAKTTANMAVQ-EEIE-----APLFVQGLKPYEV 3591

Query:   220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
             E G   ++  +   KP PEVKWFK    +   ++  I    ++ ++ ++  I D    D 
Sbjct:  3592 EQGKPAELVVRVEGKPEPEVKWFKDGVPIAIDNQHVIEKKGENGSHTLV--IKDTNNADF 3649

Query:   280 GTYRCNVKNEFGXXXXXXXXX----XXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335
             G Y C   N+ G                    E   P FIE  K      G  VV+ECKV
Sbjct:  3650 GKYTCQATNKAGKDETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFAVEGDTVVLECKV 3709

Query:   336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
               +  P+I +F   + ++    +   V   G+   I+L +++ +KED G Y+C   N  G
Sbjct:  3710 NKESHPQIKFFKNDQPVEIGQHMQLEVLEDGN---IKLTIQNAKKEDVGAYRCEAVNVAG 3766

Query:   396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
             + N N  L I+    ++  V    G + ++G  +T
Sbjct:  3767 KANTNADLKIQFAAKVEEHVTDESGQLEEIGQFET 3801

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IPI

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
 Identities = 97/365 (26%), Positives = 156/365 (42%)

Query:    56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PTI 113
             A LTI  V K DSG+Y   A N+ G+ S T  LN  E   +L +P    P F KK   T+
Sbjct:  9118 AHLTILKVDKGDSGQYTCYAVNEVGKDSCTAQLNIKE---RL-IP----PSFTKKLSETV 9169

Query:   114 HQ-DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
              + +G+   +E  +  S    + WY+    I  T   +++ K+   +T LL  +I     
Sbjct:  9170 EETEGNSFKLEGRVAGSQPISVAWYKNNIEIHPTSNCEITFKN---NTLLL--QIKRAGM 9224

Query:   173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
             DD G Y C   N  G +    ++  +  +      P F +    +    G  +Q+ C   
Sbjct:  9225 DDAGLYTCKVSNDAGSALCTSSIVIKEPKK----PPVFDQHLTPVTASEGEFVQLSCHVW 9280

Query:   233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGX 292
                   ++W KA + +K S +     +  + T   + E+ D    D+G Y C   N  G 
Sbjct:  9281 GSEPIRIQWLKAGREIKPSDRCSF--SFANGT--AVLELKDVTKADAGDYVCKASNVAGS 9336

Query:   293 XXXXXXXXXXX--XXXPEGDPPT------FIEKPK-IRSEQGGKLVVMECKVKAKPMPEI 343
                             P            F+ +P+ IR  +      +  KV   P+P +
Sbjct:  9337 DTSKSKVTIKDKPAAVPAAKKAAVDGKLFFVSEPQSIRVVEKTTATFI-AKVGGDPIPNV 9395

Query:   344 VWFHEGK--ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
              W  +GK  +L Q  RI   +  KGD+   +LE++D  K D+GLY+C   N HGE+ +N+
Sbjct:  9396 KWT-KGKWRQLNQGGRIL--IHQKGDE--AKLEIRDTTKTDSGLYRCVAFNKHGEIESNV 9450

Query:   402 TLNIE 406
              L ++
Sbjct:  9451 NLQVD 9455

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0053519 Unc-89 "Unc-89" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 8.9e-21, Sum P(3) = 8.9e-21
 Identities = 84/308 (27%), Positives = 142/308 (46%)

Query:   104 APRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
             AP F KK     D   G+ LV+EC ++ SP+P + W +    ++ +  IK+S    G   
Sbjct:  2219 APSFVKKLDNALDVLQGEPLVLECCVDGSPLPTVQWLKDGDEVKPSESIKISTNPDG--- 2275

Query:   161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
              L++LEIN+   +D G Y+    N  GE  A  A+  +  E      P F+ KP  I ++
Sbjct:  2276 -LVKLEINSCQPNDSGAYKLIISNPHGEKVALCAVAVKPEE----MQPKFL-KP--ITSQ 2327

Query:   221 S---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
             +   G  ++++ + +  P PEVKW+K   L++ S +I  I N  +    +I +   P+  
Sbjct:  2328 TVVVGEPLKLEAQVTGFPAPEVKWYKDGMLLRPSPEINFI-NSPNGQIGLIIDAAQPL-- 2384

Query:   278 DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
             D+G Y+C + N+ G               P+   P F+ + +  S   G  V M+ KV  
Sbjct:  2385 DAGVYKCLIANKGGEIEGVSKVEIV----PKESKPVFVAELQDASSIEGFPVKMDIKVVG 2440

Query:   338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
              P P++ WFH G E++     S    ++       L ++     D+GLY+   +N  G  
Sbjct:  2441 NPKPKLQWFHNGHEIKPD--ASHIAIVENPDNSSSLIIEKTAPGDSGLYEVIAQNPEGST 2498

Query:   398 NANLTLNI 405
              +   L +
Sbjct:  2499 ASKAKLYV 2506

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IKR

GO:0004672 "protein kinase activity" evidence=IKR

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0031430 "M band" evidence=IDA

WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
 Identities = 106/402 (26%), Positives = 173/402 (43%)

Query:    26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
             ++ YH G  + ++D  S+ L +     Y L +L+   V  +D G++K + KN  GE  S 
Sbjct: 16429 VDWYHNGEHISIND--SNYLRKHDKGRYELHILS---VDSTDEGKWKAVGKNAFGECESE 16483

Query:    86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVI 143
               L     DG+       AP F K+ +  +  + D+L +E  ++A+P P+I W++    I
Sbjct: 16484 AKLTVVIPDGQY------APSFGKQLSDVKCSESDILKLEVNIQANPAPEINWFRNESEI 16537

Query:   144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ----- 198
             E +   ++     G   Y   L I +   +D G Y+C A N IG+++    +  +     
Sbjct: 16538 EHSQHHRLQFDD-GSGNY--SLTIIDAYAEDSGEYKCVAKNKIGKAHTVCCVRIEELLSK 16594

Query:   199 -GGENGAGFAPSF---IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI 254
                +     AP F   +  PR +P   G  + + C  S  P P +KW K DK +  S+K 
Sbjct: 16595 RSKKIDGSKAPRFRMQLPTPREVPQ--GADLTLVCSVSGTPHPNIKWTKDDKPIDMSNK- 16651

Query:   255 KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTF 314
             ++       T  II    D    D G Y C  +N  G                +   P F
Sbjct: 16652 QVRHENGVCTLHIIGARDD----DQGRYVCEAENIHGVAQSFSVVEIKEAVDKDHVRPKF 16707

Query:   315 IEKPKIR-SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
             +E P +  S   G  +V+EC V  KP+P I W+ +G +L   +R+      KG     RL
Sbjct: 16708 LE-PLVNCSTCEGNEMVLECCVTGKPIPTITWYKDGLKLIIENRMLQYTDRKGVS---RL 16763

Query:   374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRV 415
              + +    D G Y C   N  G+   + T+ +  +   K R+
Sbjct: 16764 NIMNVVMNDDGEYTCEAVNSLGKDFTHCTVKVVDMGLSKTRL 16805

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0031672 "A band" evidence=IDA

MGI|MGI:894806 Mylk "myosin, light polypeptide kinase" [Mus musculus (taxid:10090)]

 Score = 223 (83.6 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
 Identities = 80/320 (25%), Positives = 131/320 (40%)

Query:   105 PRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTY 161
             PRF  +P   +  +G  +   C +   P PD+ W+ +G  V    G  ++ +  +     
Sbjct:   402 PRFESQPQSQEVTEGQTVKFICEVSGIPKPDVGWFLEGIPVRRREGITEVYEDGVSHHLC 461

Query:   162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF--IEKPRIIPN 219
             LLR      T+D    Y C A NS+G+ + + +L      N A  APSF  + K  ++  
Sbjct:   462 LLRAR----TRDSR-KYSCTASNSLGQVSCSWSL-LVDRPNLAQTAPSFSSVLKDSVVIE 515

Query:   220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
               G    ++C     P P V W    + ++ +  I      +    E+   I D +  D 
Sbjct:   516 --GQDFVLRCSVQGTPAPRVTWLLNGQPIQFAHSIC-----EAGVAEL--HIQDALPEDR 566

Query:   280 GTYRCNVKNEFGXXXXXXXXXXXXXXXPEGD------P-------PTFIEKPKIRSEQGG 326
             GTY C  +N  G                EG+      P       P F++         G
Sbjct:   567 GTYTCLAENAMGQVSCSATVTVQEKKG-EGEREHRLSPARSKPIAPIFLQGLSDLKVMDG 625

Query:   327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
               V M  +V   P PE++W H+G E+Q+++   ++   KG  +H  L +++   EDTG Y
Sbjct:   626 SQVTMTVQVSGNPPPEVIWLHDGNEIQESE--DFHFEQKGG-WH-SLCIQEVFPEDTGTY 681

Query:   387 KCNIKNFHGELNANLTLNIE 406
              C   N  GE+     L ++
Sbjct:   682 TCEAWNSAGEVRTRAVLTVQ 701

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001725 "stress fiber" evidence=ISO

GO:0003779 "actin binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004687 "myosin light chain kinase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IMP

GO:0014820 "tonic smooth muscle contraction" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030027 "lamellipodium" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0032060 "bleb assembly" evidence=ISO

GO:0032154 "cleavage furrow" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=ISO

GO:0071476 "cellular hypotonic response" evidence=ISO

GO:0090303 "positive regulation of wound healing" evidence=ISO

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
 Identities = 97/365 (26%), Positives = 155/365 (42%)

Query:    56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PTI 113
             A LTI  V K DSG+Y   A N+ G+ S T  LN  E   +L +P    P F KK   T+
Sbjct:  9096 AHLTIVKVDKGDSGQYTCYAVNEVGKDSCTAQLNIKE---RL-IP----PSFTKKLSETV 9147

Query:   114 HQ-DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
              + +G+   +E  +  S    + WY+    I  T   ++    + K+  LL L++   + 
Sbjct:  9148 EETEGNSFKLEGRVAGSQPITVAWYKNNVEIHPTSNCEI----MFKNNALL-LQVKRASM 9202

Query:   173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
              D G Y C A N  G +    ++  +  +      P F +    +    G  +Q+ C   
Sbjct:  9203 ADAGLYTCKATNDAGSALCTSSIVIKEPKK----PPVFDQHLAPVTASEGDSVQLSCHVQ 9258

Query:   233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGX 292
                   ++W KA + VK S +     +    T   + E+ +    DSG Y C   N  G 
Sbjct:  9259 GSEPIRIQWLKAGREVKPSDRCSF--SFASGT--AMLELKETAKADSGDYVCKASNVAGS 9314

Query:   293 XXXXXXXXXXX--XXXPEGDPPT------FIEKPK-IRSEQGGKLVVMECKVKAKPMPEI 343
                             P            F+ +P+ IR  +      +  KV   P+P +
Sbjct:  9315 DTSKCKVTIKEKPAAAPAAKKAAVDGKLFFVSEPQSIRVVEKTTATFI-AKVGGDPIPNV 9373

Query:   344 VWFHEGK--ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
              W  +GK  +L Q  RI   +  KGD+   +LE++D  K D+GLY+C   N HGE+ +N+
Sbjct:  9374 KWT-KGKWRQLNQGGRIL--IHQKGDE--AKLEIRDTTKTDSGLYRCVAFNKHGEIESNV 9428

Query:   402 TLNIE 406
              L ++
Sbjct:  9429 NLQVD 9433

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 79/299 (26%), Positives = 128/299 (42%)

Query:   117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD-DG 175
             GD  VMEC    +P+P + W++G   +E    ++ S   I  D  L  L+I   T+D D 
Sbjct:   718 GDTTVMECKSSGTPLPQVKWFKGD--LE----LRPSPFLI-IDPLLGLLKIQE-TQDLDA 769

Query:   176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
             G+Y C A N  G +   I L+        G  P FI++P  +  E G+ + + C     P
Sbjct:   770 GDYTCVAVNDAGRAAGKITLD-------VGSPPVFIQEPADVSVEIGSNVTLPCYVQGYP 822

Query:   236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXX 295
              P++KW ++D +   S    +    Q  T  +   I++    D GTY C  +N+FG    
Sbjct:   823 EPKIKWRRSDNMPIFSRPFSVSSISQLRTGALF--ISNLWANDKGTYICEAENQFGKIQS 880

Query:   296 XXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQ 354
                        P          P + S   G+ + + C + A  P+PE  W      L Q
Sbjct:   881 QTTVTVTGLVAP-----LIGISPSVTSVIEGQQLTLPCALLAGNPIPERRWIKNSAMLVQ 935

Query:   355 TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKY 413
                I    T++ D     L ++  R +D G Y C   N  G +N   T+++ ++  I++
Sbjct:   936 NPYI----TVRSDG---SLHIERVRLQDGGKYTCVASNVAGTVNKTTTVDVHVLPTIQH 987

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	540
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-10
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	5e-10
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-10
smart00409	85	smart00409, IG, Immunoglobulin	9e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-09
smart00409	85	smart00409, IG, Immunoglobulin	4e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-08
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	8e-08
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-07
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	3e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-07
smart00409	85	smart00409, IG, Immunoglobulin	4e-07
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	9e-07
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	9e-07
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	2e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-06
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	3e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	4e-06
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-06
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	4e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	6e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-05
smart00409	85	smart00409, IG, Immunoglobulin	1e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	2e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	2e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	3e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	3e-05
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	5e-05
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	5e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	8e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	9e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	1e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	1e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	2e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-04
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	3e-04
cd05855	79	cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-	3e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	3e-04
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	5e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	5e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-04
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	5e-04
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	5e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	5e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	6e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	6e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	8e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.001
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.001
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.001
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.001
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	0.001
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.001
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.001
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.001
PHA02785	326	PHA02785, PHA02785, IL-beta-binding protein; Provi	0.001
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.002
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.002
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.002
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.003
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.003
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	0.003
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P F +KPK    Q G+     C V   P P + WF +G+ L+ +DR    VT +G  Y  
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRF--KVTYEGGTY-- 56

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
            L + + + +D G Y C   N  GE  A+  L +
Sbjct: 57  TLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 208 PSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
           P F +KP+   +   ES       C  +  P P V WFK  + ++ S + K+       T
Sbjct: 1   PKFTQKPKDVEVQEGESARF---TCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57

Query: 265 YEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNI 301
             I       + P D G Y C   N  GE+ A+  L +
Sbjct: 58  LTI-----SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 105 PRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           P+F +KP    + Q+G+     C +   P P + W++  + +  + R K++ +     TY
Sbjct: 1   PKFTQKPKDVEV-QEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEG---GTY 56

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              L I+N   DD G Y C A NS GE+ A+  L 
Sbjct: 57  --TLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.0 bits (134), Expect = 4e-10
 Identities = 19/74 (25%), Positives = 29/74 (39%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           V + C     P P I W   GK L  +       +         L + +   ED+G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 389 NIKNFHGELNANLT 402
              N  G ++A++T
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G+ V + C  +  P+P I W  +GK L +++R               L +K    ED+GL
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFV--------ASGSTLTIKSVSLEDSGL 53

Query: 386 YKCNIKNFHG 395
           Y C  +N  G
Sbjct: 54  YTCVAENSAG 63

Length = 63

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G  + + C  E +P+P+I W +  K + ++ R   S            L I + + +D G
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS---------TLTIKSVSLEDSG 52

Query: 177 NYRCNACNSIG 187
            Y C A NS G
Sbjct: 53  LYTCVAENSAG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 117 GDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
           G+ + + C    SP P++ WY QG K++ ++GR  +S+           L I+N T +D 
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSR-----SGSTSTLTISNVTPEDS 63

Query: 176 GNYRCNACNSIGESNANIAL 195
           G Y C A NS G +++   L
Sbjct: 64  GTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 117 GDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
           G+ + + C    SP P++ WY QG K++ ++GR  +S+           L I+N T +D 
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSR-----SGSTSTLTISNVTPEDS 63

Query: 176 GNYRCNACNSIGESNANIAL 195
           G Y C A NS G +++   L
Sbjct: 64  GTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEG-KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
           G+ V + C+    P PE+ W+ +G K L ++ R S             L + +   ED+G
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV----SRSGSTSTLTISNVTPEDSG 64

Query: 385 LYKCNIKNFHGELNANLTLNI 405
            Y C   N  G  ++  TL +
Sbjct: 65  TYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEG-KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
           G+ V + C+    P PE+ W+ +G K L ++ R S             L + +   ED+G
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV----SRSGSTSTLTISNVTPEDSG 64

Query: 385 LYKCNIKNFHGELNANLTLNI 405
            Y C   N  G  ++  TL +
Sbjct: 65  TYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
           G+P   +        +  G  L+ SDR   T       L      TI NVQ  D G+Y 
Sbjct: 25 TGDPDPTVS------WFKDGQPLRSSDRFKVTYEGGTYTL------TISNVQPDDEGKYT 72

Query: 73 VIAKNKNGEGSSTVNLN 89
           +A N  GE  ++  L 
Sbjct: 73 CVATNSAGEAEASAELT 89

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
           + + C+    P P I W +  K +  +   +  + S G  +    L I+N T +D G Y 
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTR-VRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 180 CNACNSIGESNANI 193
           C A NS G  +A++
Sbjct: 60  CVASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
           R+    +G+ +++KC  S  PRP + W K  K  K+  +I      +   + +I E   P
Sbjct: 2   RLHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRK-KKWTLILESVVP 60

Query: 275 IGPDSGTYRCNVKNEFGESNANLNLNI 301
              DSG Y C V+N++G  N    +++
Sbjct: 61  --SDSGKYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G  + + C +   P  D+ W++  K +E++  +   +  +      + L I+N T +D G
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSS----ITLTISNVTPEDSG 56

Query: 177 NYRCNA 182
            Y C  
Sbjct: 57  TYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G  +++EC  +A+P P   W +GT+++ +  RI     SI  D     LEI N TK D G
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRI-----SIWDDG---SLEILNITKLDEG 52

Query: 177 NYRCNACNSIGESNANIAL 195
           +Y C A N+ G++N+   L
Sbjct: 53  SYTCFAENNRGKANSTGVL 71

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 225 IQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTY 282
           + + C+ S  P PEV W+K   KL+ ES +  +  +    T  I       + P DSGTY
Sbjct: 12  VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTI-----SNVTPEDSGTY 66

Query: 283 RCNVKNEFGESNANLNLNI 301
            C   N  G +++   L +
Sbjct: 67  TCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 225 IQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTY 282
           + + C+ S  P PEV W+K   KL+ ES +  +  +    T  I       + P DSGTY
Sbjct: 12  VTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTI-----SNVTPEDSGTY 66

Query: 283 RCNVKNEFGESNANLNLNI 301
            C   N  G +++   L +
Sbjct: 67  TCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 9/75 (12%)

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
            GD+++ EC  +A+P P I W +GT+++ ++ RI      I  D     LEI N TK D 
Sbjct: 1   GGDVII-ECKPKAAPKPTISWSKGTELLTNSSRI-----CIWPDG---SLEILNVTKSDE 51

Query: 176 GNYRCNACNSIGESN 190
           G Y C A N  G++N
Sbjct: 52  GKYTCFAENFFGKAN 66

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V ++C     P P I W  +GK  ++  RI      K  K    L ++     D+G 
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG---GYKVRKKKWTLILESVVPSDSGK 65

Query: 386 YKCNIKNFHGELNANLTLNI 405
           Y C ++N +G +N    +++
Sbjct: 66  YTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
           + + C  S  P P + W K  K +  S   ++  +    +      I++    DSGTY C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 285 NVKNEFGESNANLN 298
              N  G  +A++ 
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 46.0 bits (110), Expect = 9e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
           S +P P V W K  K +K S +++I   E   +   +  I +    DSG Y   +KN  G
Sbjct: 9   SGRPTPTVTWSKDGKPLKLSGRVQI---ETTASSTSLV-IKNAERSDSGKYTLTLKNPAG 64

Query: 292 ESNANLNL 299
           E +A +N+
Sbjct: 65  EKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
           P + +   GK + + C V   P PE+ W    + L  +D   +NV ++  KY   L +K 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDH--YNVKVEQGKY-ASLTIKG 64

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
              ED+G Y   +KN +G    ++T+++
Sbjct: 65  VSSEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKED 382
           G+   ++C+V+  P P I W   G  ++ TD           + H+    L + D +  D
Sbjct: 1   GETARLDCQVEGIPTPNITWSINGAPIEGTD--------PDPRRHVSSGALILTDVQPSD 52

Query: 383 TGLYKCNIKNFHGELNANLTLNI 405
           T +Y+C  +N HG L AN  +++
Sbjct: 53  TAVYQCEARNRHGNLLANAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G+   ++C+ +  P P I W   G  +++      +   + D   + L    P   DT +
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPP---DPRRRVDGGTLILSNVQPN--DTAV 55

Query: 386 YKCNIKNFHGELNANLTLNI 405
           Y+CN  N HG L AN  +++
Sbjct: 56  YQCNASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 16/86 (18%)

Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL-----VKESSKIKIIVNEQDDTYEIIC 269
           R+I    G+ +++KC  S  PRP++ W K +K      + ES K K  ++ ++   E   
Sbjct: 2   RVIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPE--- 58

Query: 270 EITDPIGPDSGTYRCNVKNEFGESNA 295
                   DSG Y C+V N  GE NA
Sbjct: 59  --------DSGKYTCHVSNRAGEINA 76

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKY-HIRLEVKDPRKEDTGLY 386
           V +EC+V A P P+I W    + L   TDRIS    L  D    I L +++  KED G Y
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRIS----LYQDNCGRICLLIQNANKEDAGWY 56

Query: 387 KCNIKNFHGELNANLTLNI 405
             +  N  G ++ N  L++
Sbjct: 57  TVSAVNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 16/79 (20%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGK-----ELQQTDRISWNVTLKGDKYHIRLEVKDPRK 380
           G  V ++C     P P+I W  + K     E+ ++ +  W ++LK           + + 
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLK-----------NLKP 57

Query: 381 EDTGLYKCNIKNFHGELNA 399
           ED+G Y C++ N  GE+NA
Sbjct: 58  EDSGKYTCHVSNRAGEINA 76

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
           L++EC+ E  P P+I W    K+  +     +       + +   L+I+N +++D G YR
Sbjct: 1   LLLECIAEGLPTPEISWI---KIGGE-----LPADRTKFENFNKTLKIDNVSEEDDGEYR 52

Query: 180 CNACNSIGES 189
           C A NS+G +
Sbjct: 53  CTASNSLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
           P + +   GK + + C V   P PE++WF   ++++ ++  S  V L+  KY   L +K 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYS--VKLEQGKY-ASLTIKG 64

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
              ED+G Y  N+KN +G    ++T+++
Sbjct: 65  VTSEDSGKYSINVKNKYGGETVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V + C V   P  ++ WF EGK L+++  +  +           L + +   ED+G 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSI---TLTISNVTPEDSGT 57

Query: 386 YKC 388
           Y C
Sbjct: 58  YTC 60

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 31 KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           G LL  S R S       SR    + LTI NV   DSG Y   A N +G  SS   L
Sbjct: 32 GGKLLAESGRFSV------SRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 31 KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           G LL  S R S       SR    + LTI NV   DSG Y   A N +G  SS   L
Sbjct: 32 GGKLLAESGRFSV------SRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
            L IKN ++SDSG+Y +  KN  GE S+T+N+
Sbjct: 40 TSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
           CK  A P+P + W K  +L+  SS+I I      D    I  +T     D G Y C  +N
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSSRICIW----PDGSLEILNVTK---SDEGKYTCFAEN 60

Query: 289 EFGESN 294
            FG++N
Sbjct: 61  FFGKAN 66

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
           K+ +      V   C     P P + W   GKE +Q  RI     ++   + + +E   P
Sbjct: 2   KLHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVP 60

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNI 405
              D G Y C ++N +G +N    L++
Sbjct: 61  --SDKGNYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKEL-QQTDRISWNVTLKGDKY-HIRLEVKDPRKEDTGLY 386
           V +EC+V   P P+I W  E + L   TDR+S    +  D   +I L ++   KED G Y
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVS----MHQDNCGYICLLIQGATKEDAGWY 56

Query: 387 KCNIKNFHGELNANLTLNI 405
             + KN  G ++    L++
Sbjct: 57  TVSAKNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 10/72 (13%)

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DS 279
            G  + + C     P P + W K  K + ES            T  I       +   DS
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPES----NRFVASGSTLTI-----KSVSLEDS 51

Query: 280 GTYRCNVKNEFG 291
           G Y C  +N  G
Sbjct: 52  GLYTCVAENSAG 63

Length = 63

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 456 VIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNF 515
           V+  +P VVTI + KT+ + C V    +P V+W+K    +   + + V +EQ K  S+  
Sbjct: 3   VVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTI 62

Query: 516 E 516
           +
Sbjct: 63  K 63

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 456 VIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSM 513
           VI  +P VVTI + KT+ + C V    +P V W K    ++    + V +EQ K  S+
Sbjct: 3   VIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASL 60

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
           +G  +++    S +P P V W + DK   E+   ++ V    D    + E  +    D G
Sbjct: 9   AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEG-RVRVESYKDLSSFVIEGAER--EDEG 65

Query: 281 TYRCNVKNEFGESNANLNLNI 301
            Y   V N  GE +A+L + +
Sbjct: 66  VYTITVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ--QTDRISWNVTL-KGD 367
           PP  +E P       G    + CK + +P P I W   G+ L+  + D  S  + L  G 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
            + +R+      + D G+Y C   N  GE
Sbjct: 61  LFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
           T+  +G    + C  E SP+P + W     ++  T    +       D Y L+L  +N T
Sbjct: 10  TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLET---TVDIYNLQL--SNIT 64

Query: 172 KDDGGNYRCNACNSIGESNANIALN 196
            +      C A N +G++N ++ + 
Sbjct: 65  SETQTTVTCTAENPVGQANVSVQVT 89

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----------LEV 375
           G+     C V  +P PEI W    K++   +    N+ ++ +  H+R          L +
Sbjct: 1   GETASFHCDVTGRPPPEITW---EKQVHGKE----NLIMRPN--HVRGNVVVTNIGQLVI 51

Query: 376 KDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
            + + +D GLY C  +N  G L AN  L++
Sbjct: 52  YNAQPQDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
           P ++    G  + + C     P PEV W K D+ +  S    + V +       I  ++ 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 274 PIGPDSGTYRCNVKNEFG 291
               DSG Y   VKN++G
Sbjct: 68  ---EDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 122 MECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
           +EC + A P P I W +  +++  +T RI + + + G+    + L I N  K+D G Y  
Sbjct: 3   LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGR----ICLLIQNANKEDAGWYTV 58

Query: 181 NACNSIGESNANIALN 196
           +A N  G  + N  L+
Sbjct: 59  SAVNEAGVVSCNARLD 74

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
           G+ ++ +CK S  PRP  +W K  + +   ++I++   +          IT     DSG 
Sbjct: 14  GSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGD--------LRITKLSLSDSGM 65

Query: 282 YRCNVKNEFGESNANLNLNI 301
           Y+C  +N+ G   A+  L +
Sbjct: 66  YQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 25/86 (29%)

Query: 3  FPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKN 62
          FP+   ++T +GEP +  E  +  N                   +D S +      TI +
Sbjct: 30 FPEPTMTWTKDGEPIESGEEKYSFN-------------------EDGSEM------TILD 64

Query: 63 VQKSDSGEYKVIAKNKNGEGSSTVNL 88
          V K D  EY  IA+NK GE  + ++L
Sbjct: 65 VDKLDEAEYTCIAENKAGEQEAEIHL 90

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
           ECK    P P   W   G+ L   +RI       GD    +L +      D+G+Y+C  +
Sbjct: 20  ECKASGNPRPAYRWLKNGQPLASENRIE---VEAGDLRITKLSL-----SDSGMYQCVAE 71

Query: 392 NFHGELNANLTLNI 405
           N HG + A+  L +
Sbjct: 72  NKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 117 GDLLVMECVL-EASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
           G++ V+EC      P P + W + G  +  D  R++     I  D  LL   I    K D
Sbjct: 11  GEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVR-----IVDDGNLL---IAEARKSD 62

Query: 175 GGNYRCNACNSIGESNANIA 194
            G Y+C A N +GE  +  A
Sbjct: 63  EGTYKCVATNMVGERESAAA 82

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
           I  +C+ + KP P VKW K   +V  S   K IV E +       ++   +  D G Y+C
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFK-IVKEHN------LQVLGLVKSDEGFYQC 54

Query: 285 NVKNEFGESNANLNLNI 301
             +N+ G   A   L I
Sbjct: 55  IAENDVGNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           P   + PK V + + ++    C V    +P+V+W K+   ++  ++  V  E
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYE 52

Length = 90

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
           GG  V++ECK KA P P I W    + L  + RI   +   G      LE+ +  K D G
Sbjct: 1   GGD-VIIECKPKAAPKPTISWSKGTELLTNSSRIC--IWPDGS-----LEILNVTKSDEG 52

Query: 385 LYKCNIKNFHGELNANLTLNI 405
            Y C  +NF G+ N+  +L++
Sbjct: 53  KYTCFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
           P ++    G  + + C     P PEV WFK D+ ++ S    + + +       I  +T 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVT- 66

Query: 274 PIGPDSGTYRCNVKNEFG 291
               DSG Y  NVKN++G
Sbjct: 67  --SEDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143263 cd05855, Ig_TrkB_d5, Fifth domain (immunoglobulin-like) of Trk receptor TrkB

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNV-TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
           VK  P P + WFHEG  L +++ I   +  +   +YH  L++ +P   + G+Y    KN 
Sbjct: 7   VKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNE 66

Query: 394 HGELNANLT 402
           +GE   N++
Sbjct: 67  YGEDEKNVS 75

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. Length = 79

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
              + + KPR +    G   +  C    +P P V W +  +++  S + +I   E   T+
Sbjct: 2   LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTF 61

Query: 266 EI-ICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299
           EI   +++     D G Y   V+N  G+  A   L
Sbjct: 62  EISKVQMS-----DEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE------DTGRIKMSKKS 155
            PR  + P   I   GD   + C  E  P P I W +  + +E       + RI +   S
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
           +    + LR+      + D G Y C A NS+GE+
Sbjct: 61  L----FFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P T + KP+  +   G+     C V  +P P + W  EG+ +  + R     T    +Y 
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST----EYK 58

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
              E+   +  D G Y   ++N  G+  A  TL
Sbjct: 59  STFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
          + LTI NV   DSG Y  +A N  G  S++V 
Sbjct: 43 STLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
           G+ L ++  +   P P + W +G K   +T GR+++      KD     +E     ++D 
Sbjct: 10  GNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY---KDLSSFVIEG--AEREDE 64

Query: 176 GNYRCNACNSIGESNANIAL 195
           G Y     N +GE +A++ +
Sbjct: 65  GVYTITVTNPVGEDHASLFV 84

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 15/77 (19%)

Query: 325 GGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDPR 379
            G++ V+EC   +  P P + W  +G+ L           L  ++  I     L + + R
Sbjct: 10  VGEMAVLECSPPRGHPEPTVSWRKDGQPL----------NLDNERVRIVDDGNLLIAEAR 59

Query: 380 KEDTGLYKCNIKNFHGE 396
           K D G YKC   N  GE
Sbjct: 60  KSDEGTYKCVATNMVGE 76

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
           V +EC++ A P P+I W    + +Q  TDRIS     + +   + L +K+  K+D G Y 
Sbjct: 1   VKLECQISAIPPPKIFWKRNNEMVQYNTDRIS---LYQDNSGRVTLLIKNVNKKDAGWYT 57

Query: 388 CNIKNFHGELNANLTLNI 405
            +  N  G    +  L++
Sbjct: 58  VSAVNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 331 MECKVKAKPMPEIVWFHEG-KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
           +EC     P P+I W  +G  +         +V  + D + I     D + EDTG+Y C 
Sbjct: 3   LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFI----VDVKIEDTGVYSCT 58

Query: 390 IKNFHGELNANLTLNI 405
            +N  G ++AN TL +
Sbjct: 59  AQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 122 MECVLEASPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
           M C    +P P+I W++    ++ T  GRIK  +           L+I N  + D G Y 
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGA--------LQIENSEESDQGKYE 54

Query: 180 CNACNSIG 187
           C A NS G
Sbjct: 55  CVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 222 GTLIQMKCKCSAKPRPEVKW-FKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
           G    ++CK    P P + W     KL+  SS+  +  N    T +I+  IT     D+G
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDIL--ITTV--KDTG 53

Query: 281 TYRCNVKNEFGESNANLNLNI 301
           ++ C   N  GE+ A + L+I
Sbjct: 54  SFTCIASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 335 VKAKPMPEIVWFHEGKELQQTDRIS---WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
           V+  P P + W+H G  L ++D I            +YH  L+  +P   + G Y     
Sbjct: 7   VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS 66

Query: 392 NFHGELNANLT 402
           N +G+ + +++
Sbjct: 67  NEYGQDSKSIS 77

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           V +E  +  +P P + W  +GK L+ + R+    T         L +K+  + D+G Y  
Sbjct: 2   VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT---ASSTS-LVIKNAERSDSGKYTL 57

Query: 389 NIKNFHGELNANLTL 403
            +KN  GE +A + +
Sbjct: 58  TLKNPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
           G+ + + C  S  P+ +V WFK  K ++ES+ +    N        I  +T     DSGT
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVT---PEDSGT 57

Query: 282 YRCNV 286
           Y C V
Sbjct: 58  YTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDT 383
           GG+ V++ECK KA P P+  W    + L    RIS W+           LE+ +  K D 
Sbjct: 1   GGR-VIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--------SLEILNITKLDE 51

Query: 384 GLYKCNIKNFHGELNANLTLNI 405
           G Y C  +N  G+ N+   L++
Sbjct: 52  GSYTCFAENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
           G  + ++CK  A P+P+  W K  +L+  +S+I I     D + EI+  IT     D G+
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW---DDGSLEIL-NITK---LDEGS 53

Query: 282 YRCNVKNEFGESNANLNLNI 301
           Y C  +N  G++N+   L++
Sbjct: 54  YTCFAENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI-KIIVNEQDDTYEIICEITDPIGPDS 279
           +   ++ +C  +  P P ++W K  K  K+  +I    V  Q   + +I E   P   D 
Sbjct: 8   AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVP--SDK 63

Query: 280 GTYRCNVKNEFGESNANLNLNI 301
           G Y C V+NE+G  N   +L++
Sbjct: 64  GNYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 228 KCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
           +C     P P+V+W  A  +V ++    +         ++    ++       T  C  +
Sbjct: 21  RCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSE----TQTTVTCTAE 76

Query: 288 NEFGESNANLNLNI 301
           N  G++N ++ + +
Sbjct: 77  NPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 122 MECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
           +EC + A P P I W +  ++++ +T RI + + + G+ T L    I N  K D G Y  
Sbjct: 3   LECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLL----IKNVNKKDAGWYTV 58

Query: 181 NACNSIGESNANIALN 196
           +A N  G +  +  L+
Sbjct: 59  SAVNEAGVATCHARLD 74

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G+ + + C    +P P+  WY+    +  +                      N + +D G
Sbjct: 14  GEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF---------------TPNVSAEDSG 58

Query: 177 NYRCNACNS-IGESNANIALN 196
            Y C A N   G+++  + L 
Sbjct: 59  TYTCVASNGGGGKTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           V + C +   P P   WF +G  L        N ++   +  + L    P  +D+GLY C
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQG---NYSVSSKERTLTLRSAGP--DDSGLYYC 55

Query: 389 NIKNFHGEL--NANLTLNI 405
              N  G +  + N TL+I
Sbjct: 56  CAHNAFGSVCSSQNFTLSI 74

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 60/237 (25%)

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG-GKLV 329
           I +P   DSG Y C  KNE      +LNL I + +E   D    I  P+I +E+  G++V
Sbjct: 86  ILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNID---LISYPQIVNERSTGEMV 142

Query: 330 V--MECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
              +   + +    +I+W           R   N  LK     I + ++D RK D G Y 
Sbjct: 143 CPNINAFIASNVNADIIW--------SGHRRLRNKRLKQRTPGI-ITIEDVRKNDAGYYT 193

Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
           C +K  +G+   N+T      R +K  VR                               
Sbjct: 194 CVLKYIYGDKTYNVT------RIVKLEVRDR----------------------------- 218

Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPS----VTWMKEKNTVKEDNK 500
                ++P   ++P+ V  S    + I C+V S+  P+    V W+      +ED++
Sbjct: 219 -----IIPPTMQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISNGMYYEEDDE 269

Length = 326

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 19/94 (20%)

Query: 213 KPRIIPNES----GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII 268
           KP + P+ +    G  + + C     P P   W+K    +  S       N   +     
Sbjct: 1   KPVLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPNVSAE----- 55

Query: 269 CEITDPIGPDSGTYRCNVKNE-FGESNANLNLNI 301
                    DSGTY C   N   G+++  + L +
Sbjct: 56  ---------DSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 317 KPKIRSEQG----GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
           KP +         G+ V + C     P P   W+ +G  L  +    +            
Sbjct: 1   KPVLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------------ 48

Query: 373 LEVKDPRKEDTGLYKCNIKNFH-GELNANLTLNI 405
               +   ED+G Y C   N   G+ +  +TL +
Sbjct: 49  --TPNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 225 IQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD-SGTY 282
           + ++C     PRP  +WF+    L        +   E+  T           GPD SG Y
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLR-------SAGPDDSGLY 53

Query: 283 RCNVKNEFGE--SNANLNLNIEAE 304
            C   N FG   S+ N  L+I  E
Sbjct: 54  YCCAHNAFGSVCSSQNFTLSIIDE 77

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
           +Q+ C     P P + W K    V ES K  I     +    I       +G  D G Y 
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI---SPEGYLAI-----RDVGVADQGRYE 52

Query: 284 CNVKNEFGESNANLNL 299
           C  +N  G ++ ++ L
Sbjct: 53  CVARNTIGYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 330 VMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           V++C+  ++ P     WF +GKEL + ++   N+ ++  K +  L++   +  D+G Y C
Sbjct: 2   VLKCEATSEYPSLRFKWFKDGKELNRKNKPR-NIKIRNKKKNSELQINKAKLADSGEYTC 60

Query: 389 NIKNFHGELNANLTLNI 405
            ++N  G  N  +T N+
Sbjct: 61  VVENILG--NDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 32/110 (29%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK------ADKLVKESSKI------ 254
            P  +E P  +    G    + CK   +P P ++W K       DK    S +I      
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 255 ----KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE---SNANL 297
               +++   +                D G Y C   N  GE    NA+L
Sbjct: 61  LFFLRVVHGRKG-------------RSDEGVYVCVAHNSLGEAVSRNASL 97

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 125 VLEASPMPDIIWYQGTKVIEDTGRI--KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
            +  +P P + WY    V+ ++  I  ++  +      Y   L+ +NPT  + GNY   A
Sbjct: 6   TVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVA 65

Query: 183 CNSIGESNANIALNF 197
            N  G+ + +I+ +F
Sbjct: 66  SNEYGQDSKSISAHF 80

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
           LV+EC+ E  P P++ W        D     +S     K      L+++N  + D G Y 
Sbjct: 1   LVLECIAEGLPTPEVHW--------DRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYV 52

Query: 180 CNACNSIG 187
           C A NS G
Sbjct: 53  CTAENSEG 60

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
          EG P   I           G  L  S+R         S       LTIK+V   DSG Y 
Sbjct: 12 EGNPVPNIT------WLKDGKPLPESNRFV------ASGST----LTIKSVSLEDSGLYT 55

Query: 73 VIAKNKNG 80
           +A+N  G
Sbjct: 56 CVAENSAG 63

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4194|consensus	873		99.97
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.95
KOG3515|consensus	741		99.84
PHA02826	227	IL-1 receptor-like protein; Provisional	99.81
PHA02826	227	IL-1 receptor-like protein; Provisional	99.8
KOG3515|consensus	741		99.79
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.64
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.58
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.58
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.56
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.55
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.55
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.54
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.53
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.53
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.52
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.52
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.51
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.5
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.5
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.49
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.49
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.49
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.49
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.49
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.48
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.48
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.48
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.48
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.48
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.48
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.47
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.47
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.47
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.47
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.47
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.47
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.46
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.46
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.46
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.46
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.46
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.46
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.46
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.44
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.44
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.43
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.43
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.43
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.43
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.43
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.42
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.42
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.42
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.42
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.42
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.41
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.41
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.41
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.41
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.41
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.41
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.4
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.4
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.39
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.39
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.39
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.39
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.39
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.39
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.39
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.39
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.39
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.38
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.38
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.38
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.37
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.37
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.37
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.36
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.36
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.35
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.35
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.35
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.35
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.34
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.34
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.34
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.34
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.34
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.34
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.33
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.33
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.33
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.33
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.33
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.33
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.33
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.32
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.32
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.32
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.32
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.31
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.3
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.3
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.3
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.3
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.3
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.3
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.29
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.29
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.28
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.27
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.27
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.27
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.27
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.27
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.26
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.26
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.26
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.26
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.26
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.26
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.25
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.25
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.24
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.23
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.23
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.22
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.22
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.22
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.22
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.21
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.21
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.21
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.21
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.2
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.2
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.2
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.18
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.17
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.15
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.15
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.15
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.14
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.14
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.13
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.13
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.12
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.12
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.11
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.08
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.07
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.07
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.06
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.05
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.05
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.04
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.03
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.03
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.03
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.02
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.01
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.01
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.0
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.0
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.99
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.96
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.94
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.94
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.93
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.92
PHA03376	221	BARF1; Provisional	98.91
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.91
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.89
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.87
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.86
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.84
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.83
smart00409	86	IG Immunoglobulin.	98.83
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.83
PHA03376	221	BARF1; Provisional	98.83
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.82
smart00409	86	IG Immunoglobulin.	98.81
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.81
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.81
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.8
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.79
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.79
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.77
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.77
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.76
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.75
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.75
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.74
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.74
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.74
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.74
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.73
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.69
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.68
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.67
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.66
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.64
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.64
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.63
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.62
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.56
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.55
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.5
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.49
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.48
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.47
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.46
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.46
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.43
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.43
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.43
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.42
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.42
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.39
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.38
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.38
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.37
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.37
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.37
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.35
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.35
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.33
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.33
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.32
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.31
PHA03270	466	envelope glycoprotein C; Provisional	98.31
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.31
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.3
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.3
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.29
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.29
PHA03273	486	envelope glycoprotein C; Provisional	98.29
PHA03269	566	envelope glycoprotein C; Provisional	98.29
PHA03270	466	envelope glycoprotein C; Provisional	98.28
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.28
PHA03271	490	envelope glycoprotein C; Provisional	98.28
PHA03269	566	envelope glycoprotein C; Provisional	98.27
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.27
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.27
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.27
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.26
PHA03273	486	envelope glycoprotein C; Provisional	98.26
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.24
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.22
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.22
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.2
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.2
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.17
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.17
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.17
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.15
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.15
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.13
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.12
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.11
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.11
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.1
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.09
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.09
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.08
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.08
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.07
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.07
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.06
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.05
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.03
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.02
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.01
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.0
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.0
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.0
smart00407	75	IGc1 Immunoglobulin C-Type.	97.98
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.98
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.98
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.97
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.96
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.96
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.96
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.95
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.95
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.95
PHA03271	490	envelope glycoprotein C; Provisional	97.93
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.92
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.92
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.91
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.91
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.9
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.9
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.9
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.9
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.88
smart00407	75	IGc1 Immunoglobulin C-Type.	97.88
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.85
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.84
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.84
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.83
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.82
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.82
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.81
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.81
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.8
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.8
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.78
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.78
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.78
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.78
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.75
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.74
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.74
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.73
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.72
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.69
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.68
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.67
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.64
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.64
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.63
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.62
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.62
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.61
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.6
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.59
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.58
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.52
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.48
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.47
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.46
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.44
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.38
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.34
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.34
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.33
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.33
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.26
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.24
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.23
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.18
PHA02633	63	hypothetical protein; Provisional	97.16
smart00406	81	IGv Immunoglobulin V-Type.	97.15
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.11
smart00406	81	IGv Immunoglobulin V-Type.	97.06
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.06
KOG0613|consensus	1205		97.05
KOG0613|consensus	1205		97.02
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.01
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.89
PHA02633	63	hypothetical protein; Provisional	96.86
KOG1480|consensus	909		96.83
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.61
PHA02982	251	hypothetical protein; Provisional	96.43
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.1
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.08
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	95.78
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.38
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	95.36
PHA02982	251	hypothetical protein; Provisional	95.12
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.0
KOG1480|consensus	909		94.97
KOG4597|consensus	560		94.81
PHA03042	286	CD47-like protein; Provisional	94.63
PHA03042	286	CD47-like protein; Provisional	94.47
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.34
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.33
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.64
PHA03283	542	envelope glycoprotein E; Provisional	93.39
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	93.32
PHA02865	338	MHC-like TNF binding protein; Provisional	92.86
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	92.67
KOG4597|consensus	560		92.57
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	92.37
PHA03282	540	envelope glycoprotein E; Provisional	90.92
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.92
PHA03283	542	envelope glycoprotein E; Provisional	90.82
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.47
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	90.31
PHA02865	338	MHC-like TNF binding protein; Provisional	90.27
PRK14081	667	triple tyrosine motif-containing protein; Provisio	87.05
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	86.84
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	86.09
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	84.38
PHA03281	642	envelope glycoprotein E; Provisional	83.35
PF00801	69	PKD: PKD domain; InterPro: IPR000601 The PKD (Poly	82.72
PHA03052	69	Hypothetical protein; Provisional	82.59
PHA03189	348	UL14 tegument protein; Provisional	82.48
PHA03052	69	Hypothetical protein; Provisional	80.8

>KOG3513|consensus

Probab=100.00  E-value=5.2e-50  Score=399.97  Aligned_cols=434  Identities=23%  Similarity=0.397  Sum_probs=337.5

Q ss_pred             cccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccc-cCCCeeEEEEEEccCccee-
Q psy670            6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGS-   83 (540)
Q Consensus         6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~-   83 (540)
                      .++.|.+.|+|.      |+|.|+|||.............. .       ++|.|.+.. ..|.|.|+|.|+|..|... 
T Consensus        60 v~l~C~A~G~P~------Psy~W~kng~~~d~~~~~~~~~~-~-------G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S  125 (1051)
T KOG3513|consen   60 VTLNCEANGNPE------PSYRWTKNGTEFDPTEYPRVSVL-G-------GTLVITNPDAALDQGIYQCFASNKLGTAVS  125 (1051)
T ss_pred             EEEEEEecCCCC------ceeEEEECCeecccccccceeee-c-------CceEecCCcchhhcceeEEEeecccceeec
Confidence            468899999999      99999999998876554444443 3       378888888 9999999999999888753 


Q ss_pred             eeEEEEEeecCC---------------ccccCCCCC--------------------------------------------
Q psy670           84 STVNLNFSEEDG---------------KLKVPGGKA--------------------------------------------  104 (540)
Q Consensus        84 ~~~~l~v~~~~~---------------~~~i~~~~~--------------------------------------------  104 (540)
                      ..+.|.....+.               ...+++..+                                            
T Consensus       126 ~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~  205 (1051)
T KOG3513|consen  126 REARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDF  205 (1051)
T ss_pred             cceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhc
Confidence            233333221110               011111111                                            


Q ss_pred             -----------------------------------CCCC---CCCccccCCCeEEEEEEEeecCCCceEEEeCCE-eecC
Q psy670          105 -----------------------------------PRFP---KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTK-VIED  145 (540)
Q Consensus       105 -----------------------------------~~~~---~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~-~~~~  145 (540)
                                                         |.+.   ........|+.+.|.|-+.|+|.|++.|.|.+. ++..
T Consensus       206 ~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~  285 (1051)
T KOG3513|consen  206 GNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR  285 (1051)
T ss_pred             CceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc
Confidence                                               0010   012334579999999999999999999999766 3332


Q ss_pred             CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE
Q psy670          146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI  225 (540)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~  225 (540)
                        +.....       +...|.|.+++.+|+|.|.|.++|..|.....+.+.|..       +|.++..+.+..+..|+.+
T Consensus       286 --r~~~~~-------~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a-------~P~w~~~~~d~~~~~gs~v  349 (1051)
T KOG3513|consen  286 --RATYSN-------YGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYA-------PPYWLQKPQDTEADTGSNV  349 (1051)
T ss_pred             --ceeeec-------cccEEEecccCcCCCeEEEEEEecccccceeeEEEEEec-------CchhhcccceeEecCCCCe
Confidence              222221       122899999999999999999999999999999999996       8889999999999999999


Q ss_pred             EEEEEecccCCCeEEEEeCCEEeeccCc---eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          226 QMKCKCSAKPRPEVKWFKADKLVKESSK---IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       226 ~l~C~~~~~p~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      .+.|.+.|.|.++++|++||.++....+   ..+..        .+|.|.+++..|+|.|.|.|+|..|.....+.|.|.
T Consensus       350 ~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~--------g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~  421 (1051)
T KOG3513|consen  350 TLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD--------GTLIISNVQESDSGVYQCIAENKYGTIYANAELKVL  421 (1051)
T ss_pred             EEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC--------CEEEEEecccccCeEEEeeeecccceEeeeeEEEEE
Confidence            9999999999999999999999986655   33322        289999999999999999999999999999999998


Q ss_pred             eccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          303 AEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       303 ~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..      +|.+...+.  ...+..|..+.|.|...+.|.|.+.|.+++..+..+.++.  +..+|     +|.|.+++.
T Consensus       422 a~------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~--i~edG-----tL~I~n~t~  488 (1051)
T KOG3513|consen  422 AS------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIR--ILEDG-----TLEISNVTR  488 (1051)
T ss_pred             cc------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEE--ECCCC-----cEEecccCc
Confidence            85      455544442  3467789999999999999999999999988665555543  33445     799999999


Q ss_pred             CCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC
Q psy670          381 EDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV  460 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~  460 (540)
                      +|+|.|+|.|+|..|.......|.|..                                              +++|...
T Consensus       489 ~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------------------------------------------~tri~~~  522 (1051)
T KOG3513|consen  489 SDAGKYTCVAENKLGKAESTGNLIVKD----------------------------------------------ATRITLA  522 (1051)
T ss_pred             ccCcEEEEEEEcccCccceEEEEEEec----------------------------------------------CceEEec
Confidence            999999999999999999999999999                                              9999999


Q ss_pred             CcEEEecCCCeEEEEEEEeeec--CCceEEEecCeecCCC---C------------eEEEEEEecCCeEEEEEEeeeeee
Q psy670          461 PKVVTISKKKTVVIECKVMSMY--EPSVTWMKEKNTVKED---N------------KHVVHIEQVKDVSMNFELWLGIVE  523 (540)
Q Consensus       461 ~~~~~~~~g~~~~l~C~v~g~p--~~~v~W~~~~~~l~~~---~------------~~~~~~~~~~~g~y~c~~~~~~~~  523 (540)
                      |....+..|+.++|.|.+.-.+  ...|.|.+||..+...   .            .-+-++...+.|.|+|.+.. .+.
T Consensus       523 P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT-~~D  601 (1051)
T KOG3513|consen  523 PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQT-ALD  601 (1051)
T ss_pred             cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEE-eec
Confidence            9999999999999999998554  4488999999977533   1            11224566789999999876 333


Q ss_pred             eeCCeeEEEEEecc
Q psy670          524 KRGPSIKIIYYIAP  537 (540)
Q Consensus       524 ~~~~~~~~~~~~~~  537 (540)
                      .-...+.+++.-+|
T Consensus       602 s~s~~A~l~V~gpP  615 (1051)
T KOG3513|consen  602 SASARADLLVRGPP  615 (1051)
T ss_pred             chhcccceEEecCC
Confidence            33334455555444

>KOG3513|consensus

Probab=100.00  E-value=1e-43  Score=355.02  Aligned_cols=349  Identities=25%  Similarity=0.396  Sum_probs=284.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .++|...|+|+      |+|.|.|.|.... ..+.....        +..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus       260 ~LECfA~G~P~------P~i~W~k~~g~~~-~~r~~~~~--------~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~  324 (1051)
T KOG3513|consen  260 KLECFALGNPT------PQIKWRKVDGKPP-PRRATYSN--------YGKVLKIPNVQYEDAGEYECIAENSRGSATHSG  324 (1051)
T ss_pred             EEEEEecCCCC------CcEEEEeCCCCCC-Ccceeeec--------cccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence            47799999999      9999999888522 23332221        235999999999999999999999999888999


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCc---eEEEEeecCcceEEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR---IKMSKKSIGKDTYLL  163 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~  163 (540)
                      .|.|...|..+.-         .....+..|+.++|.|.+.|.|.|+|+|++||.++....+   ..+...         
T Consensus       325 ~v~v~a~P~w~~~---------~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g---------  386 (1051)
T KOG3513|consen  325 HVTVYAPPYWLQK---------PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG---------  386 (1051)
T ss_pred             EEEEecCchhhcc---------cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC---------
Confidence            9999887643331         2345677899999999999999999999999999986655   444432         


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCce--eecCCCCeEEEEEEecccCCCeEEE
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI--IPNESGTLIQMKCKCSAKPRPEVKW  241 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~v~W  241 (540)
                      .|.|.++...|+|.|.|.|+|..|.....+.|.|.+.      +|.+...+..  ..+..|..+.|.|.+.+.|.+.++|
T Consensus       387 ~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~------~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W  460 (1051)
T KOG3513|consen  387 TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS------APVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSW  460 (1051)
T ss_pred             EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc------CCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEE
Confidence            8999999999999999999999999999999999862      4566555443  3566799999999999999999999


Q ss_pred             EeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceE
Q psy670          242 FKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIR  321 (540)
Q Consensus       242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~  321 (540)
                      .+.+..+..+.++.+..+.       +|.|.+++.+|+|.|+|.|.|..|....+..|.|..       ++.++..|...
T Consensus       461 ~k~~~~~~~~~r~~i~edG-------tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd-------~tri~~~P~~~  526 (1051)
T KOG3513|consen  461 LKGGEKLLQSGRIRILEDG-------TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD-------ATRITLAPSNT  526 (1051)
T ss_pred             EcCCcccccCceEEECCCC-------cEEecccCcccCcEEEEEEEcccCccceEEEEEEec-------CceEEeccchh
Confidence            9999866666666553332       799999999999999999999999999999999987       78888888888


Q ss_pred             EeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          322 SEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      .+..|++++|.|.+...+.  ..+.|.+||..+............++... ..|+|.+++.+|+|.|+|.|.-...+.++
T Consensus       527 ~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~  605 (1051)
T KOG3513|consen  527 DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDS-GRLTIANVSLEDSGKYTCVAQTALDSASA  605 (1051)
T ss_pred             hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCc-cceEEEeeccccCceEEEEEEEeecchhc
Confidence            8999999999999987664  46899999998764333222222333222 47999999999999999999887777788


Q ss_pred             EEEEEEEEEE
Q psy670          400 NLTLNIEMVR  409 (540)
Q Consensus       400 ~~~l~V~~~~  409 (540)
                      .+.|.|..+|
T Consensus       606 ~A~l~V~gpP  615 (1051)
T KOG3513|consen  606 RADLLVRGPP  615 (1051)
T ss_pred             ccceEEecCC
Confidence            8888888733

>KOG4222|consensus

Probab=100.00  E-value=5.9e-39  Score=317.23  Aligned_cols=429  Identities=24%  Similarity=0.408  Sum_probs=318.3

Q ss_pred             cccceeeeCcceeEEeecceeeeeecCeecccC--CceEEEEecCccceeeEEEEEE--cccccCCCeeEEEEEEccCcc
Q psy670            6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMS--DRLSSTLVQDQSRLYYLAVLTI--KNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~i--~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      +.+.|..+|.|+      |+|+|||+|+++...  ...++.+ .++ .++   -|.+  -.....|.|.|+|.+.|..|.
T Consensus        49 atlnc~asG~pp------Pti~w~k~G~~~~~~e~~shR~~l-p~g-sLf---~l~~ahg~~a~~d~G~y~cvasn~~g~  117 (1281)
T KOG4222|consen   49 ATLNCKASGDPP------PTIEWYKDGENVFKGEPGSHRFLL-PDG-SLF---LLRLAHGKKAGHDHGVYSCVASNRLGE  117 (1281)
T ss_pred             ceeecCCCCCCC------CceecccCCcccCCCCCCCcceec-CCc-cEE---EEecccCCcccCCCceeEeeecCccce
Confidence            456699999998      999999999755332  2233333 333 222   1222  111233999999999999887


Q ss_pred             eee-eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec--CCCceEEEEeecC
Q psy670           82 GSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE--DTGRIKMSKKSIG  157 (540)
Q Consensus        82 ~~~-~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~  157 (540)
                      ..+ -..|.+.....-+.+        ....+.+..|+.+.|.|-- .|+|.+.+.|.|+|+++.  ...+..+....  
T Consensus       118 avSr~a~L~vavlrddfrv--------~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG--  187 (1281)
T KOG4222|consen  118 AVSRGASLIVAVLRDDFRV--------SPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG--  187 (1281)
T ss_pred             eeecCceEEEEEechhccc--------CcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC--
Confidence            543 333333322211222        1223566789999999977 688999999999999886  22333222211  


Q ss_pred             cceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670          158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR  236 (540)
Q Consensus       158 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  236 (540)
                            .|.|.+++..|+|.|.|++.|..|.. +...+|.|.+       .|.+...+....+..|..+.+.|.+.|.|.
T Consensus       188 ------~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-------~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~  254 (1281)
T KOG4222|consen  188 ------NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-------KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ  254 (1281)
T ss_pred             ------cEEEeccccCCCceeeeeecccccccccccceeeecc-------CCccccccccceeecccccccccccCCCCC
Confidence                  79999999999999999999999875 6677888886       888999999999999999999999999999


Q ss_pred             CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEe
Q psy670          237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE  316 (540)
Q Consensus       237 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~  316 (540)
                      +.+.|.+++..+.... +.+..+..      +|.|.+++..|.|.|.|.+.|..|.......++|.+       +|.+..
T Consensus       255 P~Vrwkk~~~~~P~~r-y~i~~d~q------tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-------pP~f~k  320 (1281)
T KOG4222|consen  255 PTVRWKKDDPSLPRSR-YSILDDTQ------TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-------PPSFGK  320 (1281)
T ss_pred             CceeeeccCCCCCccc-eeeeeccc------cccccccCCCcccceeeeccccccccccccceEEec-------Cccccc
Confidence            9999999776665433 33332211      789999999999999999999999999999999988       888888


Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .+.+..+..|..++|.|.+.|+|.|.+.|.+.|.....      ....+..+...+     +|.|.+++..|.|.|.|..
T Consensus       321 kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g-----~L~it~v~~~d~g~Yvcq~  395 (1281)
T KOG4222|consen  321 KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG-----TLTITNVRQSDEGYYVCQT  395 (1281)
T ss_pred             ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC-----CcccccccccccceEeecc
Confidence            88888899999999999999999999999997653221      122222233333     7999999999999999998


Q ss_pred             EcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeee-eeeceeecCCcEEEecCC
Q psy670          391 KNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL-SVVPVIREVPKVVTISKK  469 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~i~~~~~~~~~~~g  469 (540)
                      .+..+.......+.+...                                        +.. ..+|.|...+.+.++.++
T Consensus       396 ~~~~~ss~~~a~~~qt~~----------------------------------------~~~~rPpp~i~~g~~nQtl~v~  435 (1281)
T KOG4222|consen  396 QTSAGSSLTKAYLEQTDV----------------------------------------LTDSRPPPIIEQGPANQTLPVG  435 (1281)
T ss_pred             cccccccccceeEEEEee----------------------------------------eccCCCCceeeecccccccccC
Confidence            888877655555544430                                        111 226677788888899999


Q ss_pred             CeEEEEEEEeeecCCceEEEecCeecCCCCeEE----------EEEEecCCeEEEEEEeeeeeeeeCC
Q psy670          470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV----------VHIEQVKDVSMNFELWLGIVEKRGP  527 (540)
Q Consensus       470 ~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~----------~~~~~~~~g~y~c~~~~~~~~~~~~  527 (540)
                      ..+.|.|.+.|.|.+.+.|++++-.+...+.+.          -.....|.|.|+|.+.+..-+..+.
T Consensus       436 s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wS  503 (1281)
T KOG4222|consen  436 STASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWS  503 (1281)
T ss_pred             cccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccc
Confidence            999999999999999999999987765332211          1334478999999998776655543

>KOG4221|consensus

Probab=100.00  E-value=4.4e-35  Score=291.65  Aligned_cols=352  Identities=23%  Similarity=0.408  Sum_probs=268.4

Q ss_pred             ccccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc-----CCCeeEEEEEEccC
Q psy670            5 KELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-----SDSGEYKVIAKNKN   79 (540)
Q Consensus         5 ~~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-----~D~G~Y~C~~~~~~   79 (540)
                      +.|+.|+......    ..+.|.|.|||..+......+.....++       +|.|.++..     -|.|.|+|.|+-..
T Consensus        56 svlLecs~~~~~~----~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~v~~~kh~~~~eg~Yqc~atv~~  124 (1381)
T KOG4221|consen   56 SVLLECSAYAAGG----TSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISSVLASKHNKVDEGVYQCLATVED  124 (1381)
T ss_pred             ceEEeccccccCC----CCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEeeecccccccccCceEEEEEEccc
Confidence            5688898663331    2289999999998765433333344444       788888877     89999999998762


Q ss_pred             -cc-eeeeEEEEEeecCCccccCCCCCCCCC--CCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee
Q psy670           80 -GE-GSSTVNLNFSEEDGKLKVPGGKAPRFP--KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS  155 (540)
Q Consensus        80 -~~-~~~~~~l~v~~~~~~~~i~~~~~~~~~--~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  155 (540)
                       |. .+.++.|.+...+           .|.  .....+..|+++.|.|.+.+.|.+.+.|.++..++..+.++....+.
T Consensus       125 ~gsi~Sr~a~v~~a~~~-----------~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG  193 (1381)
T KOG4221|consen  125 VGSILSRTAKVALAGLA-----------DFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG  193 (1381)
T ss_pred             cceeecceEEEEecccC-----------ccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC
Confidence             33 2445555554322           221  23456889999999999999888899999999988777765554332


Q ss_pred             cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc
Q psy670          156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK  234 (540)
Q Consensus       156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  234 (540)
                              .|.|.++...|.|.|+|.+.+.... .+..+.|+|...+. ......|...+....+.+|+++.|.|.+.+.
T Consensus       194 --------~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~-~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~  264 (1381)
T KOG4221|consen  194 --------ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG-ALNKLVFLDEPSNAVVVEGDDVVLECVVSGV  264 (1381)
T ss_pred             --------cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc-cccceeeecCCCccccccCCcEEEEEEecCC
Confidence                    8999999999999999999987643 35666777763222 2223446778888999999999999999999


Q ss_pred             CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670          235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF  314 (540)
Q Consensus       235 p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~  314 (540)
                      |.+.|.|.+|+..+.-.. ..+.....     ..|.|.+++.+|+|.|+|+|.|......+..++.|..       +|.|
T Consensus       265 p~p~v~Wlrng~~i~~ds-~rivl~g~-----~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-------~P~~  331 (1381)
T KOG4221|consen  265 PKPSVKWLRNGEKISVDS-YRIVLVGG-----SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-------PPGF  331 (1381)
T ss_pred             CCCceEEeeCCeeeeecc-eEEEEecc-----cceEEeccccccCceEEEEecCCCcccccceEEEEEc-------CCCC
Confidence            999999999999887654 33322211     2689999999999999999999666667778888877       7778


Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      +..|......++.++.|.|.+.|.|.+.+.|+++|..+..++.+++  ..++     .|.|..+-..|.|-|+|.++|..
T Consensus       332 ~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki--~~~~-----~lrIlgi~~sdeg~yQcvaen~~  404 (1381)
T KOG4221|consen  332 TKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI--VGGG-----NLRILGIVKSDEGFYQCVAENDA  404 (1381)
T ss_pred             CCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe--cCCC-----CcEEEEEecccchhhhhhhccCc
Confidence            8888888888999999999999999999999999998877665443  2232     25666666789999999999999


Q ss_pred             eeeEEEEEEEEEE
Q psy670          395 GELNANLTLNIEM  407 (540)
Q Consensus       395 g~~~~~~~l~V~~  407 (540)
                      |.......+.|..
T Consensus       405 G~a~a~a~l~vv~  417 (1381)
T KOG4221|consen  405 GSAQAAAQLEVVP  417 (1381)
T ss_pred             ccccchhhheecc
Confidence            9998888886654

>KOG4221|consensus

Probab=100.00  E-value=5.5e-33  Score=276.79  Aligned_cols=334  Identities=19%  Similarity=0.383  Sum_probs=260.5

Q ss_pred             ccccCCCeEEEEEEEee--cCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCC-----CCCeEEEEEE
Q psy670          112 TIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTK-----DDGGNYRCNA  182 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~-----~d~G~Y~C~~  182 (540)
                      ....+|.++.|.|....  .+...|.|.+||..+...  .+.....+     .   +|.|.++..     -++|.|+|.+
T Consensus        49 ~d~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsN-----g---Sl~i~~v~~~kh~~~~eg~Yqc~a  120 (1381)
T KOG4221|consen   49 SDAMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSN-----G---SLYISSVLASKHNKVDEGVYQCLA  120 (1381)
T ss_pred             cccccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccC-----C---ceeEeeecccccccccCceEEEEE
Confidence            34478999999999833  346789999999877543  22222211     1   677777766     7899999999


Q ss_pred             EcC-Cce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec
Q psy670          183 CNS-IGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE  260 (540)
Q Consensus       183 ~~~-~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~  260 (540)
                      +-. .|. .+..+.|.+..       .+.|...+...++..|+.+.|.|.+.+.|.+.+.|.++..++....++....+.
T Consensus       121 tv~~~gsi~Sr~a~v~~a~-------~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG  193 (1381)
T KOG4221|consen  121 TVEDVGSILSRTAKVALAG-------LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG  193 (1381)
T ss_pred             EccccceeecceEEEEecc-------cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC
Confidence            876 344 36667777765       555666777888999999999999999888899999999988776654443332


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP  339 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p  339 (540)
                             .|.|.+++..|.|.|+|.+++.... .+..+.|+|...+.. .....|+..|....+.+|+++.|.|.+.+.|
T Consensus       194 -------~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~-~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p  265 (1381)
T KOG4221|consen  194 -------ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA-LNKLVFLDEPSNAVVVEGDDVVLECVVSGVP  265 (1381)
T ss_pred             -------cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc-ccceeeecCCCccccccCCcEEEEEEecCCC
Confidence                   7999999999999999999986433 355566777632221 2234467778888899999999999999999


Q ss_pred             CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCc
Q psy670          340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNK  419 (540)
Q Consensus       340 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~  419 (540)
                      .|.|.|.+||..+..++ .++.....+     .|.|.+++..|+|.|+|+|+|......+...|+|..            
T Consensus       266 ~p~v~Wlrng~~i~~ds-~rivl~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a------------  327 (1381)
T KOG4221|consen  266 KPSVKWLRNGEKISVDS-YRIVLVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA------------  327 (1381)
T ss_pred             CCceEEeeCCeeeeecc-eEEEEeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEc------------
Confidence            99999999999997765 333322222     799999999999999999999877888889999998            


Q ss_pred             ceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC
Q psy670          420 GIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN  499 (540)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~  499 (540)
                                                        +|.|...|.+....++.++.|.|.+.|.|.|.+.|||||..+..++
T Consensus       328 ----------------------------------~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd  373 (1381)
T KOG4221|consen  328 ----------------------------------PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD  373 (1381)
T ss_pred             ----------------------------------CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCccc
Confidence                                              8999999999899999999999999999999999999998776543


Q ss_pred             e---------EEEEEEecCCeEEEEEEeee
Q psy670          500 K---------HVVHIEQVKDVSMNFELWLG  520 (540)
Q Consensus       500 ~---------~~~~~~~~~~g~y~c~~~~~  520 (540)
                      .         .++-+-..|.|.|.|.+++.
T Consensus       374 y~ki~~~~~lrIlgi~~sdeg~yQcvaen~  403 (1381)
T KOG4221|consen  374 YFKIVGGGNLRILGIVKSDEGFYQCVAEND  403 (1381)
T ss_pred             ceEecCCCCcEEEEEecccchhhhhhhccC
Confidence            3         33355667899999988753

>KOG4222|consensus

Probab=100.00  E-value=4e-32  Score=269.16  Aligned_cols=352  Identities=26%  Similarity=0.381  Sum_probs=270.1

Q ss_pred             cccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670            6 ELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS   84 (540)
Q Consensus         6 ~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~   84 (540)
                      ..++|.-- |.|.      +.+.|.|||.++.....-.+.+..+|       .|.|.+++.+|+|.|.|.+.|..|..++
T Consensus       149 avlEcgpP~ghpe------ptvSw~Kdg~pl~~~~~~~~~lisgG-------~LlIsnvrksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  149 AVLECGPPRGHPE------PTVSWVKDGKPLDHYDVPIIALISGG-------NLLISNVRKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             eEEeccCCCCCCC------CcceeecCCCccccccceeEEEecCC-------cEEEeccccCCCceeeeeeccccccccc
Confidence            34566644 6776      99999999999874333334444555       8999999999999999999999998654


Q ss_pred             -eEEEEEeecCCccccCCCCCCCCCC--CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceE
Q psy670           85 -TVNLNFSEEDGKLKVPGGKAPRFPK--KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY  161 (540)
Q Consensus        85 -~~~l~v~~~~~~~~i~~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  161 (540)
                       ...|.|.+.+           .|..  ....+..|..+.+.|.+.|.|.+.+.|.+++..+... ++.+..+.      
T Consensus       216 ~~A~lsv~e~P-----------~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~~d~------  277 (1281)
T KOG4222|consen  216 IPARLSVQEKP-----------WFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSILDDT------  277 (1281)
T ss_pred             ccceeeeccCC-----------ccccccccceeecccccccccccCCCCCCceeeeccCCCCCcc-ceeeeecc------
Confidence             5677776554           2222  2346778999999999999999999999977766543 33333221      


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEE
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW  241 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W  241 (540)
                       .+|.|.+++..|.|.|.|.++|..|.......++|.+       +|.|...+....+..|..++|.|.+.++|.+.+.|
T Consensus       278 -qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-------pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW  349 (1281)
T KOG4222|consen  278 -QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-------PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFW  349 (1281)
T ss_pred             -ccccccccCCCcccceeeeccccccccccccceEEec-------CcccccccCccccccCceEEeeeecCCCCCcceEE
Confidence             1899999999999999999999999999999999986       88888888888888999999999999999999999


Q ss_pred             EeCCEEeecc------CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670          242 FKADKLVKES------SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI  315 (540)
Q Consensus       242 ~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~  315 (540)
                      .+.|......      ......+...     ..|.|.+++..|.|.|.|...+..+.......+.+.........+|.+.
T Consensus       350 ~keg~q~llf~~~p~~~~~r~svs~~-----g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~  424 (1281)
T KOG4222|consen  350 LKEGSQDLLFSASPPSSNGRGSVSPT-----GTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIE  424 (1281)
T ss_pred             eccCcceecccCCCCCcCccceecCC-----CCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceee
Confidence            9977643221      1111111111     1799999999999999999888777665554444443322223355666


Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..+......++..+.|.|.+.+.|.+.+.|.++|-.+...+... .+..     +.+|.|.+....|.|.|+|.+.+..|
T Consensus       425 ~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~-s~~~-----~~~l~i~dl~~~DtG~YTc~as~~~g  498 (1281)
T KOG4222|consen  425 QGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRI-SQQE-----IGSLRIRDLKGPDTGRYTCIASDESG  498 (1281)
T ss_pred             ecccccccccCcccccChhhhCCCCCCchhhhcccccccCCccc-ceee-----eceeeeeeeecCCCcceeeeccCccc
Confidence            66777788889999999999999999999999988776544211 1111     12799999999999999999999999


Q ss_pred             eeEEEEEEEEEE
Q psy670          396 ELNANLTLNIEM  407 (540)
Q Consensus       396 ~~~~~~~l~V~~  407 (540)
                      ....+++|.|..
T Consensus       499 es~wSatl~v~~  510 (1281)
T KOG4222|consen  499 ESTWSATLTVEK  510 (1281)
T ss_pred             ccccceeeEhhh
Confidence            999999999876

>KOG4194|consensus

Probab=99.97  E-value=5.8e-29  Score=231.47  Aligned_cols=271  Identities=25%  Similarity=0.474  Sum_probs=212.7

Q ss_pred             cccCCCeEEEEEEEee--cCCCceEEEeCCEeecCCC-----ceE-EEEee--cCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          113 IHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDTG-----RIK-MSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~~-----~~~-~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      ....|+.++|+|.+.+  ..+.++.|.++++......     ++. ..++.  .....+.+.|.+.+++..|+|.|.|++
T Consensus       514 ~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVv  593 (873)
T KOG4194|consen  514 SALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVV  593 (873)
T ss_pred             hhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEE
Confidence            4558999999999955  3445899999876432210     000 00000  112234458999999999999999999


Q ss_pred             EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE-eeccCceEEEEec
Q psy670          183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL-VKESSKIKIIVNE  260 (540)
Q Consensus       183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-l~~~~~~~~~~~~  260 (540)
                      +|..|+. +..++++|..       .|.|...|.+.++..|+.+.|.|.+.|.|.|+|.|.|+|.. .+.....++.+..
T Consensus       594 tN~FGStysqk~KltV~~-------~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp  666 (873)
T KOG4194|consen  594 TNHFGSTYSQKAKLTVNQ-------APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP  666 (873)
T ss_pred             ecccCcchhheeEEEeec-------cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC
Confidence            9999975 7788888885       89999999999999999999999999999999999998876 4444444444433


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM  340 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~  340 (540)
                      ++.    .+.|.++..+|.|.|+|.|.|..|..+..+.+.|..       .|.+.....+..+..|+.+.|.|.+.+.|.
T Consensus       667 edd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e-------~p~f~~PL~~~~V~~get~vlqC~a~~~~a  735 (873)
T KOG4194|consen  667 EDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE-------TPSFSIPLEDQLVVVGETLVLQCLAEGAPA  735 (873)
T ss_pred             CCC----EEEEecccccccceeEEeeeccccceeeceEEEEec-------CCcccccccceEEEecceEEEEEecCCCCC
Confidence            333    688999999999999999999999999999999987       455555567788999999999999999876


Q ss_pred             -CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          341 -PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       341 -~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                       |.+.|+|+++++.-..+...   .++++   -|.+.....+|+|.|+|...|..|.....+.+.+..
T Consensus       736 ~pr~~W~k~d~pil~t~rh~f---~d~dQ---llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~  797 (873)
T KOG4194|consen  736 DPRLEWFKEDKPILITERHTF---PDGDQ---LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ  797 (873)
T ss_pred             CccccccCCCCceEEeecccC---CCCCe---EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence             99999999998865543322   23333   688888889999999999999999887777777665

>KOG4194|consensus

Probab=99.97  E-value=2.1e-29  Score=234.32  Aligned_cols=261  Identities=20%  Similarity=0.410  Sum_probs=207.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecc--cCCCeEEEEeCCEEeeccC-----ceEEEE----ecCCCeEEEEEEEeCCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKADKLVKESS-----KIKIIV----NEQDDTYEIICEITDPI  275 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~~~l~~~~-----~~~~~~----~~~~~~~~~~l~i~~~~  275 (540)
                      .|.+...|..+....|..++|+|.+.+  ..+..+.|.++........     .+....    ..+...+.+.|.+.++.
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            567777777777778999999999976  4566899999876432211     110000    01222334579999999


Q ss_pred             CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE-cc
Q psy670          276 GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE-LQ  353 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~-~~  353 (540)
                      ..|.|.|.|+++|..|+. +..+.+.|..       .|.|...|.+.....|+...|.|.+.|.|.|+|.|.++|.. .+
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~~-------~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP  655 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQ-------APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP  655 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEeec-------cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence            999999999999999975 5567777766       78899999999999999999999999999999999998765 66


Q ss_pred             CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeeccc
Q psy670          354 QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY  433 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (540)
                      ....-++.+..+.+    .+.|.++..+|.|.|+|.|.|.+|..+.+++|.|.+                          
T Consensus       656 AA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e--------------------------  705 (873)
T KOG4194|consen  656 AARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE--------------------------  705 (873)
T ss_pred             hhhhheeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEec--------------------------
Confidence            66665666666655    789999999999999999999999999999999998                          


Q ss_pred             ccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC-CceEEEecCeecCCCCe-------EEE--
Q psy670          434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE-PSVTWMKEKNTVKEDNK-------HVV--  503 (540)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~~v~W~~~~~~l~~~~~-------~~~--  503 (540)
                                          .|.+..+.....+..|+++.|.|.+.|.|. |...|+|++++|.-..+       ..+  
T Consensus       706 --------------------~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv  765 (873)
T KOG4194|consen  706 --------------------TPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVV  765 (873)
T ss_pred             --------------------CCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEE
Confidence                                777787788889999999999999999887 89999999998754332       222  


Q ss_pred             -EEEecCCeEEEEEEeeeeeee
Q psy670          504 -HIEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       504 -~~~~~~~g~y~c~~~~~~~~~  524 (540)
                       .....+.|.|+|++.....-.
T Consensus       766 ~~~~~~daG~yTcem~~~~~~~  787 (873)
T KOG4194|consen  766 KENLVEDAGIYTCEMSNTLGTE  787 (873)
T ss_pred             EehhhhhcceEEEEEEeeccce
Confidence             233468999999998654433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=3.7e-27  Score=220.43  Aligned_cols=256  Identities=19%  Similarity=0.317  Sum_probs=176.0

Q ss_pred             ccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ..+.+|+.+.|.|.+     .|.|.+++.|+|+|....   +....    ...   ..|.|.++..+|+|.|+|.+.|..
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~----~~g---~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPI----DNG---SNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEc----cCC---ceEEEcccCcccCeEEEEEEECCC
Confidence            355689999999997     588889999999875321   11111    111   158899999999999999999998


Q ss_pred             ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-----cccCCCeEEEEeCCEEeeccCceEEEEecC
Q psy670          187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-----SAKPRPEVKWFKADKLVKESSKIKIIVNEQ  261 (540)
Q Consensus       187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~  261 (540)
                      +.....+.|+|....     ++.+...+....+.+|..+.|.|..     .+.|.+.++|++++. + ...+...  . .
T Consensus       106 g~~~~s~~L~V~~~~-----~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~--~-~  175 (326)
T PHA02785        106 YCDMMSLNLTIVSVS-----ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQ--R-T  175 (326)
T ss_pred             cceEEEEEEEEEecC-----CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEe--c-C
Confidence            887778888776432     1222222233445689999999972     357888999988642 2 1122211  1 1


Q ss_pred             CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE----EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc
Q psy670          262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL----NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA  337 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~----~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~  337 (540)
                          ...|.|.+++.+|.|.|+|.+.|..+......    .+.|...    ..+|. +..|....+..|+.++|.|.+.|
T Consensus       176 ----~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~----~~pp~-~~~p~~~~~~~G~~v~L~C~a~g  246 (326)
T PHA02785        176 ----PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR----IIPPT-MQLPEGVVTSIGSNLTIACRVSL  246 (326)
T ss_pred             ----CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc----CCCce-ecCCCcEEecCCCcEEEEEEEEC
Confidence                12799999999999999999999877654332    3333321    22443 34456677788999999999999


Q ss_pred             cCCC---eEEEEECCEEccCCCc---eEEEEEe-----c-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          338 KPMP---EIVWFHEGKELQQTDR---ISWNVTL-----K-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       338 ~p~~---~i~W~~~~~~~~~~~~---~~~~~~~-----~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .|.+   .+.|++||..+.....   .+.....     + .......|.|.+++.+|+|.|+|.|.|..+.
T Consensus       247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            8864   8999999998864321   1111111     0 0112348999999999999999999998743

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=213.57  Aligned_cols=237  Identities=20%  Similarity=0.300  Sum_probs=161.8

Q ss_pred             ceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCC
Q psy670           24 FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGK  103 (540)
Q Consensus        24 ~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~  103 (540)
                      ++++|+|+|....   + .... .++      ..|.|.+++.+|+|.|+|.+.|..|....++.|+|.... +..+.   
T Consensus        61 ~~i~W~K~g~~~~---~-~~~~-~~g------~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~-~~~~~---  125 (326)
T PHA02785         61 LDILWEKRGADND---R-IIPI-DNG------SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVS-ESNID---  125 (326)
T ss_pred             ceEEEEECCCccc---e-EEEc-cCC------ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecC-CCccc---
Confidence            8999999985322   1 1111 122      358899999999999999999999887888888886543 11111   


Q ss_pred             CCCCCCCCccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          104 APRFPKKPTIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       104 ~~~~~~~~~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                         +...+..+.+|+.+.|.|..     .+.|.+.+.|+++.. + ...++....     .   ..|.|.+++.+|+|.|
T Consensus       126 ---~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~-----~---~~L~i~~v~~~d~G~Y  192 (326)
T PHA02785        126 ---LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRT-----P---GIITIEDVRKNDAGYY  192 (326)
T ss_pred             ---eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecC-----C---CeEEEeecChhhCeEE
Confidence               11234457799999999972     356888999988643 2 222322211     1   2799999999999999


Q ss_pred             EEEEEcCCceeEE----EEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeecc
Q psy670          179 RCNACNSIGESNA----NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKES  251 (540)
Q Consensus       179 ~C~~~~~~~~~~~----~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~  251 (540)
                      +|.+.+..+....    .+.|.|...    ..+|.+ ..|....+..|+.++|.|.+.+.|.   +.+.|+++|..+...
T Consensus       193 ~C~~~n~~g~~~~~~t~~v~l~V~~~----~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~  267 (326)
T PHA02785        193 TCVLKYIYGDKTYNVTRIVKLEVRDR----IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED  267 (326)
T ss_pred             EEEEEeccCCEEEeEEEEEEEEEecc----CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence            9999998765432    334444421    124443 3445666778999999999998776   479999999987542


Q ss_pred             C---ceEEEEec------CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          252 S---KIKIIVNE------QDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       252 ~---~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      .   ...+...+      ........|.|.+++.+|.|.|+|.|.|..+..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            1   11111111      111234689999999999999999999987443

>KOG3515|consensus

Probab=99.84  E-value=5.9e-20  Score=180.62  Aligned_cols=430  Identities=15%  Similarity=0.192  Sum_probs=257.2

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee-eeE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS-STV   86 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~~   86 (540)
                      ++|.+.|+|+     .+.|.|++.++.+.  +++...         ...+|.......+.-+.|.|++.|..+... ...
T Consensus        27 l~C~v~~~pp-----~~~~eW~h~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~   90 (741)
T KOG3515|consen   27 LPCRVNSNPP-----EIDVEWYHSTSGEH--GRYATI---------ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPM   90 (741)
T ss_pred             eeeecCCCCC-----CcceEEEecCcccc--cccccc---------cCCceeeecchhhhhhhhhhhhcccccCceecce
Confidence            5699997775     38999999998776  332221         234888999999999999999998854332 334


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE--eecCCCceEEEeCCEeecCCC--ceEEEEeecCcc-eE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL--EASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKD-TY  161 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~-~~  161 (540)
                      .+.+..++.-+.         .........+..+.+.|..  .+.|.+.+.|..++.......  .........+.. ..
T Consensus        91 ~l~v~~~pa~~~---------~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~  161 (741)
T KOG3515|consen   91 ILDVDYPPACLP---------ELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE  161 (741)
T ss_pred             eeccccCccccc---------cccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence            444443331100         0112234577889999966  456778999999877653322  111110111111 22


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCC---ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSI---GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP  237 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~  237 (540)
                      .+.+.+...+.++.|.|+|.+.+..   +.......+.+.....    ...+..........+|+.+.|.|.+.+ +|.+
T Consensus       162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~----~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~  237 (741)
T KOG3515|consen  162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCK----GIGITGAQEQQSFTEGQTINLVCNAQGGNPSQ  237 (741)
T ss_pred             ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccc----cceecchhhcCcccccceEEEEehhhcCCcch
Confidence            3478888889999999999998843   3333444444443111    222222223356778999999997765 8899


Q ss_pred             eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeC
Q psy670          238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEK  317 (540)
Q Consensus       238 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~  317 (540)
                      .+.|+++..........  .....+.....++.+..-..+......|.+.|. +  .....+.+...+      ......
T Consensus       238 ~~~w~~~s~~~~~~sl~--~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~--~~~~~tav~~~~------~~~~Is  306 (741)
T KOG3515|consen  238 QQTWYKDSRPQSESSLL--SQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-L--AASQITAVQVKP------TAVPIS  306 (741)
T ss_pred             hhhhccccccchhhhcc--cCCCCCCcccccccccccccchhhhhhccccCc-c--ccceeeeccccc------cccccc
Confidence            99999988766543111  111133333445656555556666888999981 1  222222222211      111112


Q ss_pred             CceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          318 PKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +.......|....+.|...+ +|.+.+.|+++.................+......+........|.|.|+|.+.|....
T Consensus       307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~  386 (741)
T KOG3515|consen  307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA  386 (741)
T ss_pred             CcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence            23334778999999998764 67789999997665544333222222233333446677778889999999999988754


Q ss_pred             eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEecCCCeEEEE
Q psy670          397 LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTISKKKTVVIE  475 (540)
Q Consensus       397 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~~g~~~~l~  475 (540)
                      ...+..+.+...                                            .+|.+.. ........+.+....-
T Consensus       387 ~~sss~~~l~~l--------------------------------------------~~p~~L~~~~~~v~~~e~d~~~~~  422 (741)
T KOG3515|consen  387 HSSSSSFLLPVL--------------------------------------------PSPAFLVRHKTAVVAMEQDHQAAP  422 (741)
T ss_pred             cccccceecccc--------------------------------------------CCchhhhhcccceeeccCcccccc
Confidence            443333333321                                            0343332 2223344455555554


Q ss_pred             EEEeeecCC-ceEEEecCeecCCCCeEEE------------EEEecCCeEEEEEEeeee
Q psy670          476 CKVMSMYEP-SVTWMKEKNTVKEDNKHVV------------HIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       476 C~v~g~p~~-~v~W~~~~~~l~~~~~~~~------------~~~~~~~g~y~c~~~~~~  521 (540)
                      -.+.+.|.. ++.|.+++-.+........            .+.+.+.|.|.|.++..+
T Consensus       423 ~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~  481 (741)
T KOG3515|consen  423 LPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSP  481 (741)
T ss_pred             CcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCC
Confidence            444466654 9999999887765543211            577789999999887543

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.81  E-value=2.4e-18  Score=150.70  Aligned_cols=162  Identities=22%  Similarity=0.346  Sum_probs=114.8

Q ss_pred             CCccccCCCeEEEEEEEeecC-----------CCceEEEeCCEee--cC-CCce---EEEEeecCcceEEEEEEEcCCCC
Q psy670          110 KPTIHQDGDLLVMECVLEASP-----------MPDIIWYQGTKVI--ED-TGRI---KMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p-----------~~~v~W~~~~~~~--~~-~~~~---~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      .+..+.+|+++.|.|.+.+.|           ...+.|+|++...  .. +.+.   .....+.+.  ....|.|.+++.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~--r~~~L~I~~v~~  107 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGD--RSENLWIGNVIN  107 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceec--CCCeEEECCCCh
Confidence            346678999999999986644           3489999987542  11 1110   000011000  123899999999


Q ss_pred             CCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-----cCCCeEEEEeCCEE
Q psy670          173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-----KPRPEVKWFKADKL  247 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~  247 (540)
                      +|+|.|+|.+.|..+.....+.|.|..       ++      ....+.+|+.+.|.|.+.+     +|.++++|++++..
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~  174 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDS-------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI  174 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEec-------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence            999999999999888877788887742       11      1234567999999999853     45789999999999


Q ss_pred             eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +....+..+..  ..    ..|.|.+++.+|+|.|+|.+......
T Consensus       175 l~~~~r~~~~~--~~----~~L~I~~V~~~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        175 VLYTDRIQLRN--NN----STLVIKSATHDDSGIYTCNLRFNKNS  213 (227)
T ss_pred             CCCCCCEEEeC--CC----CEEEECcCCHHhCEEEEEEEEEeECC
Confidence            87655544321  11    27999999999999999999986433

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.80  E-value=4.3e-18  Score=149.05  Aligned_cols=161  Identities=22%  Similarity=0.332  Sum_probs=114.2

Q ss_pred             ceeecCCCCeEEEEEEecccC-----------CCeEEEEeCCEEe--eccCce----EEEEecCCCeEEEEEEEeCCCCC
Q psy670          215 RIIPNESGTLIQMKCKCSAKP-----------RPEVKWFKADKLV--KESSKI----KIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p-----------~~~v~W~~~~~~l--~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      ....+.+|+++.|.|.+.++|           ..+|.|+|.+...  ......    .+...+. ......|.|.+++.+
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~~~L~I~~v~~~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRSENLWIGNVINI  108 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCCCeEEECCCChH
Confidence            345677899999999987644           3489999987642  111110    0000100 011237999999999


Q ss_pred             CcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEc
Q psy670          278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKEL  352 (540)
Q Consensus       278 d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~  352 (540)
                      |+|.|+|.+.|..+.....+.|.|..       ++      ....+.+|+.+.|.|.+.+     .|.|.|+|+++|.++
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l  175 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDS-------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV  175 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEec-------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence            99999999999887776677666632       11      1234678999999999863     467899999999999


Q ss_pred             cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          353 QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ....++.+  ..++.    +|.|.+++.+|+|.|+|.|+..++
T Consensus       176 ~~~~r~~~--~~~~~----~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        176 LYTDRIQL--RNNNS----TLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             CCCCCEEE--eCCCC----EEEECcCCHHhCEEEEEEEEEeEC
Confidence            76665433  22222    799999999999999999988653

>KOG3515|consensus

Probab=99.79  E-value=4.4e-18  Score=167.59  Aligned_cols=400  Identities=16%  Similarity=0.156  Sum_probs=241.7

Q ss_pred             cceeeeeecCeecccCC--ceEEE-EecCccceeeEEEEEEcccccCCCeeEEEEEEccC---cceeeeEEEEEeecCCc
Q psy670           23 NFQMNMYHKGSLLKMSD--RLSST-LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN---GEGSSTVNLNFSEEDGK   96 (540)
Q Consensus        23 ~~~~~W~k~~~~l~~~~--~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~   96 (540)
                      .+.+.|..++.-.....  +.... ..-.+ .....+.|.+...+.+|.|.|+|.+.+..   ...-....+.+......
T Consensus       128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gs-s~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~  206 (741)
T KOG3515|consen  128 NPNLRWGFNNRAELNAVNQRGRVGAGALGS-SYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKG  206 (741)
T ss_pred             CcceeeeeccEEeecccCCcccccccccCc-eeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccccc
Confidence            39999999987543221  11111 01111 11234688999999999999999999853   22223333444332222


Q ss_pred             cccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670           97 LKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus        97 ~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      +.+..      ......+.+|+.+.|.|.+ .++|.++++|+++......+.....   ..+.......+.+..-..++.
T Consensus       207 ~~~~~------~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~---~~sg~~v~~~~~~~~~r~~~~  277 (741)
T KOG3515|consen  207 IGITG------AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ---EPSGDTVSSTLVLRVGRQDLQ  277 (741)
T ss_pred             ceecc------hhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC---CCCCCcccccccccccccchh
Confidence            22211      1122567899999999977 5678999999998877654311111   112233334566666666667


Q ss_pred             eEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCce
Q psy670          176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKI  254 (540)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~  254 (540)
                      -...|.+.| ......-  +.+..+.      -.....+....+..|+...+.|...+ +|.+.+.|+++..........
T Consensus       278 ~~~kc~a~n-~~~~~~~--tav~~~~------~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~  348 (741)
T KOG3515|consen  278 AQLKCKASN-LLAASQI--TAVQVKP------TAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKA  348 (741)
T ss_pred             hhhhccccC-cccccee--eeccccc------ccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCc
Confidence            788899987 2221111  1121100      00111222333667889999998865 888899999966555433322


Q ss_pred             EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEE
Q psy670          255 KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMEC  333 (540)
Q Consensus       255 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C  333 (540)
                      .-............+.+......|.|.|+|.+.+.......+....+...+     +|.++ .........+++.....-
T Consensus       349 ~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~-----~p~~L~~~~~~v~~~e~d~~~~~~  423 (741)
T KOG3515|consen  349 SSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLP-----SPAFLVRHKTAVVAMEQDHQAAPL  423 (741)
T ss_pred             ccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccC-----CchhhhhcccceeeccCccccccC
Confidence            211111222333356667778889999999999876554444444444433     22222 222223333444443333


Q ss_pred             EEEccC-CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEE
Q psy670          334 KVKAKP-MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK  412 (540)
Q Consensus       334 ~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  412 (540)
                      .+.++| .+.+.|.+++.++.............+.    .+...++...|.|.|.|.++|..|.....+.+.+..     
T Consensus       424 ~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~----~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~-----  494 (741)
T KOG3515|consen  424 PVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAG----LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT-----  494 (741)
T ss_pred             cccCCCcccchhheecceecccccCceEEeecccc----ccccceeeeccCCcceeeeccCCCceeeEEeecccc-----
Confidence            333554 5579999999988776654444333332    344556888999999999999999988888777766     


Q ss_pred             EeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEe
Q psy670          413 YRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMK  490 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~  490 (540)
                                                               .|.+.........-.|.++.+.|.....+.-  .+.|.+
T Consensus       495 -----------------------------------------sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r  533 (741)
T KOG3515|consen  495 -----------------------------------------SPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPR  533 (741)
T ss_pred             -----------------------------------------CCcccccccccccCCCCcccceeeccccccchhhhcccc
Confidence                                                     6666655555566678889999999876644  789999


Q ss_pred             cCeecC
Q psy670          491 EKNTVK  496 (540)
Q Consensus       491 ~~~~l~  496 (540)
                      .+.+..
T Consensus       534 ~ge~~~  539 (741)
T KOG3515|consen  534 SGEPPS  539 (741)
T ss_pred             cCCCCc
Confidence            988764

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.64  E-value=4.8e-15  Score=112.32  Aligned_cols=92  Identities=23%  Similarity=0.374  Sum_probs=79.1

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |.|+..+....+..|+.+.|.|.+.|.|++.+.|+++|..+..+.++.......    .+.|.|.++..+|+|.|+|.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~----~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTEN----SSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCC----eeEEEECCCChhhCEEEEEEEE
Confidence            456677788889999999999999999999999999999998766554432211    2389999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIEM  407 (540)
Q Consensus       392 n~~g~~~~~~~l~V~~  407 (540)
                      |..|....++.|.|..
T Consensus        77 N~~G~~~~~~~l~V~~   92 (98)
T cd05762          77 NKLGSRQAQVNLTVVD   92 (98)
T ss_pred             cCCCceeEEEEEEEec
Confidence            9999999999999987

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.58  E-value=1.7e-14  Score=107.12  Aligned_cols=88  Identities=26%  Similarity=0.439  Sum_probs=73.8

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+..    ..+.    .|.|.+++.+|+|.|+|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~----~~~~----~L~I~~v~~~D~G~Y~C~A   72 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS----MSGA----VLKIFNIQPEDEGTYECEA   72 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe----cCCC----EEEECcCChhhCEEEEEEE
Confidence            4567777778889999999999999999999999999998776543321    2222    7999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~  406 (540)
                      .|..|....++.|.|+
T Consensus        73 ~N~~G~~~~~~~l~V~   88 (88)
T cd05851          73 ENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EcCCCceEEEEEEEEC
Confidence            9999999988888773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.58  E-value=4e-14  Score=107.26  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=71.4

Q ss_pred             ceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          319 KIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ....+.+|+++.|.|.+.| .|+|.+.|+|||.++............ .+..+.++|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567889999999999999 899999999999999865443221111 12234568999999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy670          397 LNANLTLNIE  406 (540)
Q Consensus       397 ~~~~~~l~V~  406 (540)
                      .+.++.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999988875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.56  E-value=8e-14  Score=105.63  Aligned_cols=95  Identities=25%  Similarity=0.432  Sum_probs=79.7

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+....++.+....    ..+.|.|.++..+|+|.|+|.+.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~----~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE----NSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC----CeeEEEECCCChhhCEEEEEEEE
Confidence            34566677888899999999999999999999999999999766655443322    12479999999999999999999


Q ss_pred             cCCCCeeeeEEEEEeeccC
Q psy670          288 NEFGESNANLNLNIEAEAE  306 (540)
Q Consensus       288 ~~~~~~~~~~~l~v~~~~~  306 (540)
                      |..|....++.|.|...|.
T Consensus        77 N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          77 NKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             cCCCceeEEEEEEEecCCC
Confidence            9999999999999987653

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.55  E-value=2.2e-14  Score=102.15  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=60.7

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      .++|.+.|.|.      |.|.|+|+|..+.. +.++.+.....+     ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         2 ~l~C~v~G~P~------P~i~W~k~~~~i~~~~~r~~~~~~~~g-----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05892           2 KLECQISAIPP------PKIFWKRNNEMVQYNTDRISLYQDNSG-----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCH   70 (75)
T ss_pred             EEEEEEEecCC------CeEEEEECCEECcCCCCeEEEEEcCCC-----cEEEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence            36899999999      99999999999874 356665443333     3589999999999999999999999999888


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      +.|.|
T Consensus        71 a~L~V   75 (75)
T cd05892          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            88764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.55  E-value=8.9e-14  Score=105.36  Aligned_cols=88  Identities=18%  Similarity=0.279  Sum_probs=70.3

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+++.|.|.+.| .|.|.+.|+|+|.++...................+.|.|..+..+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            456789999999999999 8999999999999997554433222110122345689999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      +..+.|.|.
T Consensus        92 ~~t~~L~V~  100 (101)
T cd04975          92 SLTFELYVN  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.55  E-value=1e-13  Score=104.36  Aligned_cols=85  Identities=26%  Similarity=0.467  Sum_probs=71.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      |....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+....+ .  ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~-~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG-K--YASLTIKGVSSEDSGKYGIVVKNKYGGE   84 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCC-C--EEEEEEccCChhhCEEEEEEEEECCCcc
Confidence            455678899999999999999999999999999998776655443322 1  2379999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy670          398 NANLTLNI  405 (540)
Q Consensus       398 ~~~~~l~V  405 (540)
                      ..++.|.|
T Consensus        85 ~~~~~v~v   92 (92)
T cd05737          85 TVDVTVSV   92 (92)
T ss_pred             eEEEEEeC
Confidence            88887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.54  E-value=1.2e-13  Score=103.92  Aligned_cols=89  Identities=26%  Similarity=0.543  Sum_probs=75.0

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.++..|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++....  .+  ..++|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~--~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS--TE--YKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE--cC--CeeEEEECCCCcccCEeEEEEE
Confidence            6777888888999999999999999999999999999999887665544332  11  2348999999999999999999


Q ss_pred             EcCCeeeEEEEEE
Q psy670          391 KNFHGELNANLTL  403 (540)
Q Consensus       391 ~n~~g~~~~~~~l  403 (540)
                      +|..|....++.|
T Consensus        79 ~N~~G~~~~~~~l   91 (92)
T cd05747          79 ENSEGKQEAQFTL   91 (92)
T ss_pred             EcCCCCEeEEEEe
Confidence            9999998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.53  E-value=2.3e-13  Score=100.98  Aligned_cols=82  Identities=21%  Similarity=0.360  Sum_probs=69.5

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      |+.++|.|.+.|.|++.+.|++++..+... .++.......+....++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            788999999999999999999999888654 3444433334555567999999999999999999999999999999999


Q ss_pred             EEE
Q psy670          405 IEM  407 (540)
Q Consensus       405 V~~  407 (540)
                      |..
T Consensus        81 V~~   83 (88)
T cd05735          81 VQE   83 (88)
T ss_pred             EeC
Confidence            987

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.53  E-value=1.1e-13  Score=98.54  Aligned_cols=74  Identities=30%  Similarity=0.513  Sum_probs=60.0

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.|.|++++..+... .++.+.  .++. ...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~--~~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLY--QDNS-GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEE--EcCC-CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            479999999999999999999998753 333332  2221 1237999999999999999999999999999888875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.52  E-value=2.2e-13  Score=102.69  Aligned_cols=90  Identities=31%  Similarity=0.622  Sum_probs=78.7

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |.|...+....+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.+.......    ..++|.|.++..+|+|.|+|.|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEE
Confidence            45666778889999999999999999999999999999999987777665433    23489999999999999999999


Q ss_pred             cCCeeeEEEEEEEE
Q psy670          392 NFHGELNANLTLNI  405 (540)
Q Consensus       392 n~~g~~~~~~~l~V  405 (540)
                      |..|....++.|.|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            99999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.52  E-value=2.5e-13  Score=100.22  Aligned_cols=82  Identities=21%  Similarity=0.410  Sum_probs=67.5

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC-ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++.++.... ++..  .....  .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~--~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV--ESYKD--LSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE--EEcCC--eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            3567789999999999999999999999999997543 3332  22221  33899999999999999999999999998


Q ss_pred             EEEEEEE
Q psy670          399 ANLTLNI  405 (540)
Q Consensus       399 ~~~~l~V  405 (540)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            8888765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.51  E-value=8.5e-14  Score=99.35  Aligned_cols=75  Identities=24%  Similarity=0.477  Sum_probs=59.4

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|+|.      |+|+|||||++|..+.++.......+ ...+.++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         3 i~~~v~G~P~------Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~   75 (79)
T cd05855           3 IPFTVKGNPK------PTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS   75 (79)
T ss_pred             EEEEEeEeCC------CceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence            5689999999      99999999999987776544322211 1123578999999999999999999999998877766


Q ss_pred             EE
Q psy670           88 LN   89 (540)
Q Consensus        88 l~   89 (540)
                      +.
T Consensus        76 ~~   77 (79)
T cd05855          76 AH   77 (79)
T ss_pred             ee
Confidence            54

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=2.8e-13  Score=102.83  Aligned_cols=87  Identities=20%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE--ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT--LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|+|.++..+........  .....+.++|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45677899999999999999999999999999986554322111  0122334589999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy670          398 NANLTLNIE  406 (540)
Q Consensus       398 ~~~~~l~V~  406 (540)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.50  E-value=6e-13  Score=98.74  Aligned_cols=83  Identities=27%  Similarity=0.408  Sum_probs=68.0

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      |+.++|.|.+.|.|.+.+.|+|++..+... .++.+.... ......++|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            789999999999999999999999888543 344333221 223445689999999999999999999999999999999


Q ss_pred             EEecC
Q psy670          196 NFQGG  200 (540)
Q Consensus       196 ~v~~~  200 (540)
                      .|.+.
T Consensus        80 ~V~~~   84 (88)
T cd05735          80 TVQEP   84 (88)
T ss_pred             EEeCC
Confidence            99863

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.50  E-value=1.8e-13  Score=97.22  Aligned_cols=73  Identities=36%  Similarity=0.599  Sum_probs=62.8

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN  196 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  196 (540)
                      |+.+.|.|.+.|.|.+++.|+|++..+..+.++.+...        .+|.|.+++.+|+|.|+|.|.|..|.......|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~--------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD--------GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC--------CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            78899999999999999999999998876666655321        1799999999999999999999999988888776


Q ss_pred             E
Q psy670          197 F  197 (540)
Q Consensus       197 v  197 (540)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.49  E-value=3.9e-13  Score=100.70  Aligned_cols=85  Identities=18%  Similarity=0.346  Sum_probs=68.5

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.........    ......+|.|.++..+|.|.|+|.|.|..|.
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~   81 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE----TTVDIYNLQLSNITSETQTTVTCTAENPVGQ   81 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE----ecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence            345556889999999999999999999999999988654432111    1112338999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy670          397 LNANLTLNI  405 (540)
Q Consensus       397 ~~~~~~l~V  405 (540)
                      ...++.|.|
T Consensus        82 ~~~~~~L~v   90 (90)
T cd04972          82 ANVSVQVTV   90 (90)
T ss_pred             eeEEEEEeC
Confidence            998888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.49  E-value=2e-13  Score=94.32  Aligned_cols=66  Identities=27%  Similarity=0.481  Sum_probs=56.4

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.|.|.+.|.|.|.+.|+|+|..+....        .+    ..|.|.++..+|+|.|+|.|+|..|...++++|.|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~----~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQ----HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC--------Cc----CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4789999999999999999999886321        11    289999999999999999999999988888877764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.49  E-value=1.4e-13  Score=98.32  Aligned_cols=73  Identities=29%  Similarity=0.294  Sum_probs=60.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      .++|.+.|.|.      |.+.|+|++..+.. +.++++....++     ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         2 ~l~C~v~G~P~------P~v~W~k~~~~l~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893           2 RLECRVSGVPH------PQIFWKKENESLTHNTDRVSMHQDNCG-----YICLLIQGATKEDAGWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             EEEEEEeEecC------CEEEEEECCEECCCCCCeEEEEEcCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            36899999999      99999999999865 345555433322     2479999999999999999999999999888


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      +.|.|
T Consensus        71 a~L~V   75 (75)
T cd05893          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            88764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.49  E-value=1.8e-13  Score=98.20  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=62.4

Q ss_pred             CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+....+.....     .   .+|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~-----~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS-----S---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc-----C---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            68999999999999999999999999886554433321     1   279999999999999999999999998888877


Q ss_pred             EE
Q psy670          196 NF  197 (540)
Q Consensus       196 ~v  197 (540)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=6.2e-13  Score=96.01  Aligned_cols=74  Identities=31%  Similarity=0.615  Sum_probs=61.5

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCce-EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI-SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      |+.+.|.|.+.|.|.|.++|+++|..+...... ....  ...    .|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSG----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCC----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            688999999999999999999999988654321 1211  122    799999999999999999999999998888887


Q ss_pred             E
Q psy670          405 I  405 (540)
Q Consensus       405 V  405 (540)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.49  E-value=4.6e-13  Score=95.57  Aligned_cols=76  Identities=24%  Similarity=0.484  Sum_probs=61.2

Q ss_pred             EEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       122 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      |.|.+.|+|.|+++|+|+|.++..+.+..............+.|.|.++..+|+|.|+|.|+|..|.....+.+++
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f   78 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF   78 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence            6799999999999999999999876554333222223334568999999999999999999999999888877654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.48  E-value=4.7e-13  Score=95.57  Aligned_cols=75  Identities=28%  Similarity=0.490  Sum_probs=59.9

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.|.|++++..+..... ++....++.. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDNCG-YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcCCC-EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            47999999999999999999999875432 2222222221 236999999999999999999999999999988875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.48  E-value=2.6e-13  Score=100.80  Aligned_cols=87  Identities=18%  Similarity=0.340  Sum_probs=71.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+.......  .  .+    ..|.|.+++.+|+|.|+|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~--~~----~~L~I~~v~~~D~G~Y~C~A   72 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--M--SG----AVLKIFNIQPEDEGTYECEA   72 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--c--CC----CEEEECcCChhhCEEEEEEE
Confidence            3556667777888899999999999999999999999998775443221  1  11    26999999999999999999


Q ss_pred             EcCCCCeeeeEEEEE
Q psy670          287 KNEFGESNANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v  301 (540)
                      .|..|.....+.|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd05851          73 ENIKGKDKHQARVYV   87 (88)
T ss_pred             EcCCCceEEEEEEEE
Confidence            999999888877766

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.48  E-value=8.5e-13  Score=100.22  Aligned_cols=83  Identities=22%  Similarity=0.469  Sum_probs=68.4

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+..... .......+.    .|.|.+++.+|+|.|+|.|.|..|....
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEE-KYSFNEDGS----EMTILDVDKLDEAEYTCIAENKAGEQEA   86 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCC-EEEEeCCCC----EEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            45678999999999999999999999999998866522 222222222    7999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy670          400 NLTLNIEM  407 (540)
Q Consensus       400 ~~~l~V~~  407 (540)
                      ++.|.|..
T Consensus        87 ~~~L~V~~   94 (95)
T cd05730          87 EIHLKVFA   94 (95)
T ss_pred             EEEEEEEe
Confidence            99998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.48  E-value=2.3e-13  Score=97.89  Aligned_cols=71  Identities=34%  Similarity=0.512  Sum_probs=61.5

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.|.      |.+.|+|+|..+..+.++.+....+.      ++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         4 l~c~~~G~P~------p~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           4 LEVPISGRPT------PTVTWSKDGKPLKLSGRVQIETTASS------TSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             EEeeEeeeCC------CeEEEEECCEEcCCCCeEEEEECCCe------EEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            6899999999      99999999999977777776554333      79999999999999999999999999888877


Q ss_pred             EEE
Q psy670           88 LNF   90 (540)
Q Consensus        88 l~v   90 (540)
                      |.|
T Consensus        72 l~V   74 (74)
T cd05748          72 VKV   74 (74)
T ss_pred             EEC
Confidence            754

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.48  E-value=5.5e-13  Score=95.99  Aligned_cols=75  Identities=24%  Similarity=0.485  Sum_probs=61.7

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+.+.|.|.+.|.|.|+|+|+++|.++......... ..++.    .|.|.+++.+|+|.|+|.|+|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~-~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR-KVDGD----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE-EecCC----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999988643221111 12232    7899999999999999999999999999999987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.48  E-value=2.7e-13  Score=97.23  Aligned_cols=73  Identities=26%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeeccc-CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM-SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      -++|.+.|.|.      |.+.|+|+|..+.. ..++.+.....+     ..+|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         2 ~L~C~v~G~P~------P~v~W~k~~~~i~~~~~r~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (75)
T cd05744           2 RLECRVSAIPP------PQIFWKKNNEMLTYNTDRISLYQDNCG-----RICLLIQNANKEDAGWYTVSAVNEAGVVSCN   70 (75)
T ss_pred             EEEEEEeecCC------CeEEEEECCEECCCCCCcEEEEEcCCC-----eEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence            36899999999      99999999999874 345554433222     2479999999999999999999999998888


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      +.|.|
T Consensus        71 ~~l~v   75 (75)
T cd05744          71 ARLDV   75 (75)
T ss_pred             EEEeC
Confidence            87764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.47  E-value=2.9e-13  Score=97.14  Aligned_cols=74  Identities=24%  Similarity=0.445  Sum_probs=62.8

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      +|+.+.|.|.+.|.|.|.+.|+++|..+....+...  . ...    +|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~-~~~----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV--L-SSG----TLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE--c-cCC----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            589999999999999999999999998876544322  1 122    799999999999999999999999999888886


Q ss_pred             E
Q psy670          405 I  405 (540)
Q Consensus       405 V  405 (540)
                      |
T Consensus        74 V   74 (74)
T cd05745          74 V   74 (74)
T ss_pred             C
Confidence            5

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.47  E-value=9.9e-13  Score=98.18  Aligned_cols=86  Identities=24%  Similarity=0.470  Sum_probs=70.4

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      +.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......    ..+.    .|.|.+++.+|+|.|+|.|.
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~----~L~i~~v~~~D~G~Y~C~a~   73 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGA----VLKIPNIQFEDEGTYECEAE   73 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCC----EEEECCCCcccCEEEEEEEE
Confidence            345556677778899999999999999999999999887665443321    1222    89999999999999999999


Q ss_pred             cCCeeeEEEEEEEE
Q psy670          392 NFHGELNANLTLNI  405 (540)
Q Consensus       392 n~~g~~~~~~~l~V  405 (540)
                      |..|....+..|.|
T Consensus        74 N~~G~~~~~~~l~V   87 (88)
T cd04968          74 NIKGKDTHQGRIYV   87 (88)
T ss_pred             ECCCcEEEEEEEEE
Confidence            99999988888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.47  E-value=9e-13  Score=100.25  Aligned_cols=93  Identities=17%  Similarity=0.332  Sum_probs=70.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      .|.|...+.......|+.+.|.|.+.|.|.|.++|++++..+.....   ......  .....+.|.|.+++.+|+|.|+
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~--~~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR--SHARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE--cCccEEEEEEecCccCcCEEEE
Confidence            45565555555566689999999999999999999999877654321   111111  1122348999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNI  405 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V  405 (540)
                      |.|.|..|....++.|.|
T Consensus        80 C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          80 CTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEecCCCCeeEEEEEEC
Confidence            999999999999888865

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.47  E-value=7.8e-13  Score=108.16  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             EEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeee
Q psy670          372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL  451 (540)
Q Consensus       372 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (540)
                      +|.|.+++.+|+|.|.|.+.+..+.....+.|.|..                                            
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~--------------------------------------------   37 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE--------------------------------------------   37 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------------------------------
Confidence            699999999999999999999888888889998887                                            


Q ss_pred             eeeceeecCCcEEEecCCCeEEEEEEEeee-cC-CceEEEecCeecC-----CCCeEEEEEEecCCeEEEEEEeeeeeee
Q psy670          452 SVVPVIREVPKVVTISKKKTVVIECKVMSM-YE-PSVTWMKEKNTVK-----EDNKHVVHIEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       452 ~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~-~~v~W~~~~~~l~-----~~~~~~~~~~~~~~g~y~c~~~~~~~~~  524 (540)
                        +|.+...+.......|+.++|.|.+.|. |+ ++|+|+++|....     .............+|+|+....+.-...
T Consensus        38 --~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~  115 (139)
T cd05771          38 --PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPG  115 (139)
T ss_pred             --CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCC
Confidence              7777665555555578999999999996 44 3899999986522     2222223445567888887777666666


Q ss_pred             eCCeeEEEEEe
Q psy670          525 RGPSIKIIYYI  535 (540)
Q Consensus       525 ~~~~~~~~~~~  535 (540)
                      +++.++.+.|.
T Consensus       116 ~~~~g~~ytC~  126 (139)
T cd05771         116 TEDAGATYTCR  126 (139)
T ss_pred             ccCCCCEEEEE
Confidence            55555555544

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.47  E-value=4.5e-13  Score=99.00  Aligned_cols=82  Identities=26%  Similarity=0.506  Sum_probs=69.5

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..|....+..|+.+.|.|.+.|.|.|.+.|+++|..+....+...    .++    .|.|.++..+|+|.|+|.|.|..|
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~----~~~----~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAG----DLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE----eCC----EEEEeeCCHHHCEEEEEEEECCCC
Confidence            345667788999999999999999999999999999876554332    122    799999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy670          396 ELNANLTLNI  405 (540)
Q Consensus       396 ~~~~~~~l~V  405 (540)
                      ....++.|.|
T Consensus        76 ~~~~~~~l~V   85 (85)
T cd05728          76 TIYASAELAV   85 (85)
T ss_pred             eEEEEEEEEC
Confidence            9988888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.47  E-value=8.1e-13  Score=97.47  Aligned_cols=82  Identities=23%  Similarity=0.526  Sum_probs=67.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .++.+...     ...+.|.|.++..+|+|.|+|.+.|..|..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            456789999999999999999999999999988653 34433321     123489999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      ...+.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            88887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.47  E-value=4.8e-13  Score=95.02  Aligned_cols=73  Identities=36%  Similarity=0.555  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+.+.|.|.+.|.|.|.|.|++++..+....++.+  ..++     +|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~--~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI--WDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE--cCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999998866555433  2222     7999999999999999999999999999888865

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.46  E-value=1.1e-12  Score=98.43  Aligned_cols=85  Identities=27%  Similarity=0.566  Sum_probs=70.5

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      |....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++...... +.  ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-GK--YASLTIKGVTSEDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-CC--EEEEEECCCChhhCEEEEEEEEeCCCce
Confidence            44567889999999999999999999999999988776655443322 22  2479999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy670          398 NANLTLNI  405 (540)
Q Consensus       398 ~~~~~l~V  405 (540)
                      ..++.|.|
T Consensus        85 ~~~~~v~~   92 (92)
T cd05891          85 TVDVTVSV   92 (92)
T ss_pred             eeEEEEEC
Confidence            98888765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.46  E-value=7.1e-13  Score=99.69  Aligned_cols=83  Identities=16%  Similarity=0.375  Sum_probs=68.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+++.|.|.+.|.|.|.+.|+|++..+....+..+....    ....+|.|.+++.+|+|.|+|.+.|..|...
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            456889999999999999999999999999998766665543221    1124799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            8877754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.46  E-value=1.1e-12  Score=98.52  Aligned_cols=86  Identities=27%  Similarity=0.546  Sum_probs=65.4

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC-CeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM-PEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-  394 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-  394 (540)
                      |....+..|+.+.|.|.+.|.|. |.+.|++ ++..+..... +...... ....++|.|.++..+|+|.|+|.|+|.. 
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~-r~~v~~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ-RISVVRN-DDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC-eEEEEeC-CCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            44556888999999999999995 7999998 7766655332 2222111 1123489999999999999999999996 


Q ss_pred             eeeEEEEEEEE
Q psy670          395 GELNANLTLNI  405 (540)
Q Consensus       395 g~~~~~~~l~V  405 (540)
                      |...+++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            88888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.46  E-value=6.4e-13  Score=100.89  Aligned_cols=88  Identities=18%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEE-eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSK-KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+..|+.+.|.|.+.|+|.|.+.|+|+|.++..+.+..... .........++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            4567789999999999999999999999999987654432221 111122344689999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888775

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.46  E-value=1.5e-12  Score=100.35  Aligned_cols=95  Identities=27%  Similarity=0.565  Sum_probs=69.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC---CceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT---DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...   .........++......+....++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            466777788888999999999999999999999999999988652   11111122233322223333445789999999


Q ss_pred             EEEEcCCee-eEEEEEEEE
Q psy670          388 CNIKNFHGE-LNANLTLNI  405 (540)
Q Consensus       388 C~a~n~~g~-~~~~~~l~V  405 (540)
                      |.|.|..|. .++.+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 677777766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.46  E-value=1.9e-13  Score=94.38  Aligned_cols=63  Identities=19%  Similarity=0.349  Sum_probs=53.8

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.|.      |.++|||||.+|....        .      .+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         3 l~c~v~g~P~------P~v~W~kdg~~l~~~~--------~------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~   62 (67)
T cd05863           3 LPVKVAAYPP------PEFQWYKDGKLISGKH--------S------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS   62 (67)
T ss_pred             EEEEEEEeCC------CEEEEEECCEECcccC--------C------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence            5799999999      9999999999996321        1      148999999999999999999999998777777


Q ss_pred             EEE
Q psy670           88 LNF   90 (540)
Q Consensus        88 l~v   90 (540)
                      +.+
T Consensus        63 ~~l   65 (67)
T cd05863          63 LEL   65 (67)
T ss_pred             EEE
Confidence            665

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.46  E-value=8e-13  Score=95.04  Aligned_cols=73  Identities=27%  Similarity=0.575  Sum_probs=61.0

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.+.|+++|..+....+......  .  ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~--~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT--A--SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC--C--CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            68999999999999999999999866655443322  1  1348999999999999999999999999988888765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.44  E-value=6.4e-13  Score=96.37  Aligned_cols=76  Identities=24%  Similarity=0.500  Sum_probs=59.1

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCc-cceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQ-SRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      +.|.+.|.|.      |+|+|||||.+|..+.+......... ......+.|+|.+++.+|+|.|+|.|.|..|..+.++
T Consensus         3 i~~~v~G~P~------P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   76 (81)
T cd04971           3 IPFTVRGNPK------PTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI   76 (81)
T ss_pred             EEEEeEeeCC------CcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence            4799999999      99999999999987765443322110 0112346899999999999999999999999988877


Q ss_pred             EEE
Q psy670           87 NLN   89 (540)
Q Consensus        87 ~l~   89 (540)
                      .|.
T Consensus        77 ~~~   79 (81)
T cd04971          77 SAH   79 (81)
T ss_pred             Eee
Confidence            664

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.44  E-value=1.4e-12  Score=93.58  Aligned_cols=74  Identities=34%  Similarity=0.534  Sum_probs=59.2

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.+.|++++..+... .++..  ...+. ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~--~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISL--YQDNC-GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEE--EEcCC-CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999999998753 33322  22211 1237999999999999999999999999998888765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.44  E-value=2.2e-12  Score=95.75  Aligned_cols=81  Identities=27%  Similarity=0.559  Sum_probs=65.7

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+....... ..... .   ...|.|.++..+|+|.|+|.|.|..|....
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~---~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN-Q---HWSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC-C---ceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            346789999999999999999999999999987654421 11111 1   227999999999999999999999999999


Q ss_pred             EEEEEE
Q psy670          400 NLTLNI  405 (540)
Q Consensus       400 ~~~l~V  405 (540)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            888875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.43  E-value=1.9e-12  Score=93.84  Aligned_cols=75  Identities=27%  Similarity=0.530  Sum_probs=62.3

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+.+.|.|.+.|.|.|.|.|+++|..+........ ....+.    .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~~~~~~----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-RRVDGG----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-EEccCC----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            68899999999999999999999998876543211 111222    7999999999999999999999999999988877

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.43  E-value=2.6e-12  Score=96.71  Aligned_cols=89  Identities=26%  Similarity=0.541  Sum_probs=74.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.++|.+.+.|+++|..+....++.+....    ..+.|.|.++..+|+|.|+|.+
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTE----YKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcC----CeeEEEECCCCcccCEeEEEEE
Confidence            677888888899999999999999999999999999999988766555443221    1258999999999999999999


Q ss_pred             EcCCCCeeeeEEE
Q psy670          287 KNEFGESNANLNL  299 (540)
Q Consensus       287 ~~~~~~~~~~~~l  299 (540)
                      .|..|....++.|
T Consensus        79 ~N~~G~~~~~~~l   91 (92)
T cd05747          79 ENSEGKQEAQFTL   91 (92)
T ss_pred             EcCCCCEeEEEEe
Confidence            9999987776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.43  E-value=2.8e-12  Score=104.93  Aligned_cols=121  Identities=15%  Similarity=0.291  Sum_probs=85.2

Q ss_pred             EEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-Cce
Q psy670           57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-PDI  134 (540)
Q Consensus        57 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~~v  134 (540)
                      +|+|.+++.+|+|.|.|.+.+..+.....+.|.|..+| .+.+.        .......+|+.+.|.|.+.|. |. ..|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P-~v~~~--------~~~~~~~~~~~~~L~C~a~g~~P~~~~i   72 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP-RVRLS--------LEKLVSMIEEPQTLICHIAGYYPLDVQV   72 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC-ceEEe--------CCCceeecCCcEEEEEEECCCCCCCeEE
Confidence            69999999999999999999988888888888887654 22222        112223378889999999885 54 489


Q ss_pred             EEEeCCEeecC----CCceE---EEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          135 IWYQGTKVIED----TGRIK---MSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       135 ~W~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .|+++|.....    .....   ...+..+.....+.|.|.....++.+.|+|.+.+..
T Consensus        73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            99998754221    01111   122233444555688998777778889999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=2e-12  Score=91.76  Aligned_cols=71  Identities=31%  Similarity=0.556  Sum_probs=59.3

Q ss_pred             eEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       328 ~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      ++.|.|.+.|.|.|.++|+++|..+.....+..  ..++     .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~--~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKI--VKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEE--EecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999998876555432  2222     5778899999999999999999999999888865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.43  E-value=2.7e-12  Score=97.80  Aligned_cols=92  Identities=22%  Similarity=0.428  Sum_probs=69.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   .+...  ......+.|.|.+++.+|+|.|+
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~   78 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVV--RGHARVSSLTLKDVQLTDAGRYD   78 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEE--eCCccEEEEEECcCCcCcCEEeE
Confidence            44454 34456788999999999999999999999999866654321   11111  12223458999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNI  405 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V  405 (540)
                      |.|.|..|....++.|.|
T Consensus        79 C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          79 CEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEeCCCCcEEEEEEeC
Confidence            999999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.42  E-value=2e-12  Score=91.77  Aligned_cols=71  Identities=25%  Similarity=0.521  Sum_probs=59.4

Q ss_pred             eEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       119 ~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      ++.|.|.+.|.|.|.+.|+|++..+....+..+....        .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999988766555443221        5888899999999999999999999888887764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.42  E-value=2.7e-12  Score=93.12  Aligned_cols=75  Identities=23%  Similarity=0.492  Sum_probs=60.0

Q ss_pred             EEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec---CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK---GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       330 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      .|.|.+.|.|.|.|+|+++|..+.............   .......|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            368999999999999999999998766433332221   223345899999999999999999999999998887764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.42  E-value=1.7e-12  Score=95.88  Aligned_cols=78  Identities=27%  Similarity=0.413  Sum_probs=66.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+..|+.+.|.|.+.|.|.+.+.|+|++..+....+.....         ..|.|.++..+|+|.|+|.+.|..|...
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~---------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA---------GDLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC---------CEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            4567899999999999999999999999999987665544321         1799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            8877764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.42  E-value=3.3e-12  Score=97.39  Aligned_cols=92  Identities=25%  Similarity=0.456  Sum_probs=68.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|.|.|++.  +..+....   ..++......  ...+|.|.+++.+|+|.
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~   78 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGR   78 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEE
Confidence            455554 5567888999999999999999999999994  44443211   1122222111  12379999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEE
Q psy670          386 YKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       386 Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+|.|.|..|....++.|.|
T Consensus        79 Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          79 YDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEeccCCcceeEEEEeC
Confidence            99999999999888888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.42  E-value=3.9e-12  Score=98.51  Aligned_cols=83  Identities=19%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      .|..+.|.|.+.|.|.+.+.|+++|..+... .++.......+....+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            5689999999999999999999999998643 333333223333344689999987 58999999999999999999999


Q ss_pred             EEEEE
Q psy670          403 LNIEM  407 (540)
Q Consensus       403 l~V~~  407 (540)
                      |.|..
T Consensus       102 L~~~~  106 (109)
T cd05773         102 LVSTS  106 (109)
T ss_pred             EEecC
Confidence            98876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.41  E-value=1.8e-12  Score=92.85  Aligned_cols=73  Identities=37%  Similarity=0.623  Sum_probs=62.3

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN  196 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  196 (540)
                      |+.+.|.|.+.|.|.+.+.|++++..+....+......        .+|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD--------GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC--------CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            78899999999999999999999998876665544321        1799999999999999999999999988888776


Q ss_pred             E
Q psy670          197 F  197 (540)
Q Consensus       197 v  197 (540)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.41  E-value=1.6e-12  Score=95.62  Aligned_cols=78  Identities=17%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccC---CceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMS---DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS   83 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~   83 (540)
                      .++|.+.|.|.    |.+.+.|+|||+++...   .++.......     ..++|+|.+++.+|+|.|+|.|.|..|..+
T Consensus         4 ~L~C~a~g~P~----p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~   74 (85)
T cd05854           4 TLQCHASHDPT----MDLTFTWSLDDFPIDLDKPNGHYRRMEVKE-----TIGDLVIVNAQLSHAGTYTCTAQTVVDSAS   74 (85)
T ss_pred             EEEEEEecCCC----CCeEEEEEECCeEccccCCCCcEEEEEecc-----eEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence            47899999998    33478999999988643   2332221111     126899999999999999999999999999


Q ss_pred             eeEEEEEeec
Q psy670           84 STVNLNFSEE   93 (540)
Q Consensus        84 ~~~~l~v~~~   93 (540)
                      +++.|.|..+
T Consensus        75 ~~~~L~V~~~   84 (85)
T cd05854          75 ASATLVVRGP   84 (85)
T ss_pred             EEEEEEEECC
Confidence            9999998764

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.41  E-value=3.8e-12  Score=91.87  Aligned_cols=74  Identities=26%  Similarity=0.407  Sum_probs=60.4

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCce-EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI-KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      |+++.|.|.+.|.|.|.+.|+++|..+...... ....    .   ...|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----S---SGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----e---CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            789999999999999999999999988643211 1111    0   1279999999999999999999999998888887


Q ss_pred             EE
Q psy670          196 NF  197 (540)
Q Consensus       196 ~v  197 (540)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.41  E-value=5.2e-12  Score=95.02  Aligned_cols=81  Identities=25%  Similarity=0.622  Sum_probs=61.2

Q ss_pred             CeEEeCCceEEee---CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670          312 PTFIEKPKIRSEQ---GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~---~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~  387 (540)
                      |.|+..|....+.   +|+.+.|.|.+.|.|.|.|.|+++|..+........... ++     .|.|.++. .+|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g-----~L~i~~~~~~~D~G~Y~   75 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG-----NLIISNPSEVKDSGRYQ   75 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC-----eEEEccCCccCcCEEEE
Confidence            4455555554443   478999999999999999999999999865443333222 22     68888874 68999999


Q ss_pred             EEEEcCCeeeE
Q psy670          388 CNIKNFHGELN  398 (540)
Q Consensus       388 C~a~n~~g~~~  398 (540)
                      |.|.|..|...
T Consensus        76 C~A~N~~G~~~   86 (94)
T cd05848          76 CLATNSIGSIL   86 (94)
T ss_pred             EEEEcCCCeEE
Confidence            99999999774

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.41  E-value=2.6e-12  Score=96.78  Aligned_cols=90  Identities=29%  Similarity=0.589  Sum_probs=77.5

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+....    ....|.|.++..+|+|.|+|.+.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEE
Confidence            45666677888999999999999999999999999999999987777766554    34589999999999999999999


Q ss_pred             cCCCCeeeeEEEEE
Q psy670          288 NEFGESNANLNLNI  301 (540)
Q Consensus       288 ~~~~~~~~~~~l~v  301 (540)
                      |..|.....+.|.|
T Consensus        77 n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   77 NSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEC
Confidence            99888888777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.41  E-value=4.4e-12  Score=93.31  Aligned_cols=78  Identities=14%  Similarity=0.290  Sum_probs=61.3

Q ss_pred             CeEEEEEEEEccCCC--eEEEEECCEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          327 KLVVMECKVKAKPMP--EIVWFHEGKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       327 ~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      +.++|.|.+.|.|.|  .+.|+++|..+....   ++.. ....  ....+|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~   77 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRR-MEVK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEE-EEec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence            468999999999987  589999999885432   2211 1111  1123899999999999999999999999999999


Q ss_pred             EEEEEE
Q psy670          402 TLNIEM  407 (540)
Q Consensus       402 ~l~V~~  407 (540)
                      .|.|..
T Consensus        78 ~L~V~~   83 (85)
T cd05854          78 TLVVRG   83 (85)
T ss_pred             EEEEEC
Confidence            999986

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.40  E-value=3.6e-12  Score=91.74  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=61.0

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN  196 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  196 (540)
                      |+.++|.|.+.|.|.|+|.|+|+|.++...........   ..   ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~---~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV---DG---DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe---cC---CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            68899999999999999999999998854322111110   11   1689999999999999999999999999999888


Q ss_pred             Ee
Q psy670          197 FQ  198 (540)
Q Consensus       197 v~  198 (540)
                      |.
T Consensus        75 v~   76 (76)
T cd05868          75 VL   76 (76)
T ss_pred             eC
Confidence            73

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.40  E-value=2.7e-12  Score=93.15  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=61.6

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+++.|.|.+.|.|.|.+.|++++..+....++...  ..++  ...|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSIT--SEGG--YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEE--ECCC--EEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            688999999999999999999999888766554332  2222  238999999999999999999999998876665544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.40  E-value=3.6e-12  Score=95.77  Aligned_cols=82  Identities=27%  Similarity=0.484  Sum_probs=63.6

Q ss_pred             ccccCCCeEEEEEEEeecCC-CceEEEe-CCEeecC-CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-c
Q psy670          112 TIHQDGDLLVMECVLEASPM-PDIIWYQ-GTKVIED-TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-G  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~  187 (540)
                      ..+.+|++++|.|.+.|.|. +.+.|++ ++..+.. ..++.+..    .+...++|.|.+++.+|+|.|+|.|.|.. |
T Consensus        10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~----~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865          10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR----NDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe----CCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            45788999999999999995 6999998 7766654 33333321    12224589999999999999999999996 7


Q ss_pred             eeEEEEEEEE
Q psy670          188 ESNANIALNF  197 (540)
Q Consensus       188 ~~~~~~~l~v  197 (540)
                      ....++.|.|
T Consensus        86 ~~~~s~~l~v   95 (96)
T cd05865          86 ESEATVNVKI   95 (96)
T ss_pred             cEEEEEEEEE
Confidence            7888887765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.40  E-value=1.9e-12  Score=91.71  Aligned_cols=70  Identities=36%  Similarity=0.619  Sum_probs=58.6

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.|.|.+.|.|.|.+.|+++|..+.......    ..+.    +|.|.++..+|+|.|+|.|.|..|....++++.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~----~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGH----SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCC----EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999999999999999999987663321    2222    79999999999999999999999988888877764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.40  E-value=1.6e-12  Score=91.08  Aligned_cols=69  Identities=20%  Similarity=0.379  Sum_probs=56.9

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.|.|.+.|.|.|.+.|+++|.++......     ..+.    .|.|.++..+|+|.|+|.|.|..|....+.++.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-----~~~~----~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-----KRGV----HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE-----ccCC----EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            368999999999999999999999764322     1121    79999999999999999999999988777776654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.39  E-value=2e-12  Score=91.56  Aligned_cols=70  Identities=27%  Similarity=0.486  Sum_probs=57.8

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ  198 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  198 (540)
                      +.|.|.+.|.|.|.+.|+|+|..+....+....         ..+|.|.++..+|+|.|+|.+.|..|.....+.++|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKS---------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcC---------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            479999999999999999999998765432211         1289999999999999999999999988777777653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.39  E-value=5.7e-12  Score=93.66  Aligned_cols=83  Identities=23%  Similarity=0.504  Sum_probs=64.6

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++..  ..++.  ..+|.|.++..+|+|.|+|.|+|..|.
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~--~~~g~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~   81 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVV--QKEGV--RSRLTIYNANIEDAGIYRCQATDAKGQ   81 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEE--EeCCC--eeEEEEecCChHHCEEEEEEEEcCCCc
Confidence            45567889999999999999998 899998 4666665555433  22332  238999999999999999999999987


Q ss_pred             e-EEEEEEEE
Q psy670          397 L-NANLTLNI  405 (540)
Q Consensus       397 ~-~~~~~l~V  405 (540)
                      . .+++.|.|
T Consensus        82 ~~~~~i~l~~   91 (92)
T cd05866          82 TQEATVVLEI   91 (92)
T ss_pred             EEEEEEEEEE
Confidence            5 66666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.39  E-value=1.1e-11  Score=93.38  Aligned_cols=86  Identities=24%  Similarity=0.490  Sum_probs=62.9

Q ss_pred             CeEEeCCceEEeeCC---CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670          312 PTFIEKPKIRSEQGG---KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~~g---~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~  387 (540)
                      |.+...|....+.+|   +.+.|.|.+.|.|.|.++|+++|..+...........  ++    .|.|.++. .+|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g----~L~I~~~~~~~D~G~Y~   75 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AG----NLVINNPQKARDAGSYQ   75 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CC----eEEEccCCccCcCEEEE
Confidence            455566666655444   6899999999999999999999999865433233222  22    68887754 58999999


Q ss_pred             EEEEcCCeeeE-EEEEE
Q psy670          388 CNIKNFHGELN-ANLTL  403 (540)
Q Consensus       388 C~a~n~~g~~~-~~~~l  403 (540)
                      |.|+|..|... +.+.|
T Consensus        76 C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          76 CLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEcCcCcEEEEEEEE
Confidence            99999999764 34444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.39  E-value=6.2e-12  Score=94.20  Aligned_cols=82  Identities=21%  Similarity=0.460  Sum_probs=65.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+..........     ......|.|.++..+|.|.|+|.|.|..|...
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~   83 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENPVGQAN   83 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence            3458899999999999999999999999998875443321111     11234899999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        84 ~~~~L~v   90 (90)
T cd04972          84 VSVQVTV   90 (90)
T ss_pred             EEEEEeC
Confidence            8887764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.39  E-value=5.5e-12  Score=94.54  Aligned_cols=83  Identities=22%  Similarity=0.461  Sum_probs=68.0

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      .+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++......  ..  ..+|.|.+++.+|+|.|+|.+.|..|...
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~--~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ--GK--YASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC--CC--EEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            457889999999999999999999999999988766554443221  11  24799999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        86 ~~~~v~~   92 (92)
T cd05891          86 VDVTVSV   92 (92)
T ss_pred             eEEEEEC
Confidence            8887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.39  E-value=3.6e-12  Score=91.21  Aligned_cols=73  Identities=37%  Similarity=0.631  Sum_probs=62.4

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+...  ...+     .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI--WPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE--CCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999998876655432  1222     7999999999999999999999999998888865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.39  E-value=1e-11  Score=94.61  Aligned_cols=92  Identities=23%  Similarity=0.361  Sum_probs=69.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCC--ceEEEEEecCCeeEEEEEEcCCCCCC-CeeE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTD--RISWNVTLKGDKYHIRLEVKDPRKED-TGLY  386 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y  386 (540)
                      ||.+ ..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+....  ++.+..........++|.|.++..+| .|.|
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            3444 34456678899999999999999999 699999999886543  34333222223445689999999855 8999


Q ss_pred             EEEEEcCCeeeEEEEEE
Q psy670          387 KCNIKNFHGELNANLTL  403 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l  403 (540)
                      +|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998877765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.39  E-value=3.2e-12  Score=97.19  Aligned_cols=86  Identities=21%  Similarity=0.426  Sum_probs=63.6

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA  191 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (540)
                      ..+..|+.++|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|+|.|+|.|.|..|....
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   91 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ   91 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence            34556899999999999999999999998776433211000000011222358999999999999999999999999988


Q ss_pred             EEEEEE
Q psy670          192 NIALNF  197 (540)
Q Consensus       192 ~~~l~v  197 (540)
                      .+.|.|
T Consensus        92 ~~~l~v   97 (97)
T cd05869          92 SMYLEV   97 (97)
T ss_pred             EEEEEC
Confidence            887764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.39  E-value=1.4e-12  Score=93.42  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=55.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~   85 (540)
                      .+.|.+.|.|.      |.|+|+|++.++......++....+       ..|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus         2 ~l~C~~~G~P~------p~v~W~k~~~~~~~~~~~~~~~~~~-------g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~   68 (74)
T cd05738           2 TMLCAASGNPD------PEITWFKDFLPVDTTSNGRIKQLRS-------GALQIENSEESDQGKYECVATNSAGTRYSAP   68 (74)
T ss_pred             EEEEEEeEecC------CEEEEEECCEECccCCCCCEEEcCC-------cEEEECCCChhhCEEEEEEEECCCCceEccc
Confidence            57899999999      9999999999887433233333333       379999999999999999999999874 456


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      +.|.|
T Consensus        69 a~l~v   73 (74)
T cd05738          69 ANLYV   73 (74)
T ss_pred             EEEEE
Confidence            66655

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.38  E-value=2.4e-12  Score=93.07  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=61.5

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      |.+.|+|++..+..+.+.++....++      ..|.|.+++.+|.|.|+|.+.|..|..+.++
T Consensus         2 ~L~C~v~g~P~------p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   69 (76)
T cd05736           2 SLRCHAEGIPL------PRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDIS   69 (76)
T ss_pred             EeEeEeeecCC------CEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEE
Confidence            57899999998      99999999999876554444444443      4799999999999999999999999999888


Q ss_pred             EEEEe
Q psy670           87 NLNFS   91 (540)
Q Consensus        87 ~l~v~   91 (540)
                      .|.|.
T Consensus        70 ~l~V~   74 (76)
T cd05736          70 SLFVE   74 (76)
T ss_pred             EEEEE
Confidence            88875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.38  E-value=5.6e-12  Score=96.05  Aligned_cols=87  Identities=20%  Similarity=0.440  Sum_probs=64.9

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+++.|.|.+.|.|.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..|...
T Consensus        10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            35678999999999999999999999999866643221100011111122345899999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        90 ~s~~l~v   96 (96)
T cd05732          90 QSMYLEV   96 (96)
T ss_pred             EEEEEeC
Confidence            8877764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.38  E-value=7.9e-12  Score=92.79  Aligned_cols=81  Identities=22%  Similarity=0.375  Sum_probs=64.6

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      .+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+.......  .  ....|.|.++..+|+|.|+|.+.|..|.....
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~--~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR--N--QHWSLIMESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe--C--CceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence            4678999999999999999999999999988655432111110  1  12379999999999999999999999998888


Q ss_pred             EEEEE
Q psy670          193 IALNF  197 (540)
Q Consensus       193 ~~l~v  197 (540)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05857          81 YHLDV   85 (85)
T ss_pred             EEEEC
Confidence            88764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.37  E-value=9.6e-12  Score=94.41  Aligned_cols=81  Identities=23%  Similarity=0.394  Sum_probs=66.8

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+..|+++.|.|.+.|.|.+.+.|+++|..+... .+.....    .   ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~----~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE----D---GSEMTILDVDKLDEAEYTCIAENKAGEQE   85 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC----C---CCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            45789999999999999999999999999988654 2222211    1   12799999999999999999999999998


Q ss_pred             EEEEEEEec
Q psy670          191 ANIALNFQG  199 (540)
Q Consensus       191 ~~~~l~v~~  199 (540)
                      ..+.|.|..
T Consensus        86 ~~~~L~V~~   94 (95)
T cd05730          86 AEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEe
Confidence            888888763

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.37  E-value=3e-12  Score=89.73  Aligned_cols=68  Identities=22%  Similarity=0.406  Sum_probs=55.1

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      +.|.|.+.|+|.|.+.|+|+|.++....+..       .   ...|.|.++..+|+|.|+|.+.|..|......++++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-------~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-------R---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-------c---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            4689999999999999999999986543221       1   127999999999999999999999997766655554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.37  E-value=4.3e-12  Score=90.07  Aligned_cols=71  Identities=24%  Similarity=0.468  Sum_probs=57.6

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.|.|.+.|.|.|.+.|++++..+..... .  ....+.    +|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~--~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-K--KLNNNK----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-e--EEcCCC----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            46899999999999999999887754322 1  111222    89999999999999999999999999988888773

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.37  E-value=1.2e-12  Score=92.36  Aligned_cols=66  Identities=23%  Similarity=0.419  Sum_probs=56.5

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.|.      |.++|+|+|.++..+.++.+.  .+       ++|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus         3 L~C~~~g~P~------p~i~W~k~g~~~~~~~~~~~~--~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           3 IPCSAQGDPE------PTITWNKDGVQVTESGKFHIS--PE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             eEecceEeCC------CEEEEEECCEECCCCCCEEEC--CC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            6899999998      999999999998776666542  23       38999999999999999999999998877766


Q ss_pred             E
Q psy670           88 L   88 (540)
Q Consensus        88 l   88 (540)
                      |
T Consensus        68 L   68 (69)
T cd05746          68 L   68 (69)
T ss_pred             e
Confidence            5

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.37  E-value=7e-12  Score=90.56  Aligned_cols=73  Identities=30%  Similarity=0.661  Sum_probs=56.5

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE--EEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN--ANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~  406 (540)
                      ++|.|.+.|.|.|.+.|+++|.++..... .........    +|.|.++..+|+|.|+|.|.|..|...  ..++|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~-~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQG-NYSVSSKER----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCc-cEEEeCCCC----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            47999999999999999999998865432 112222222    799999999999999999999999864  45555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=5.3e-12  Score=91.72  Aligned_cols=77  Identities=21%  Similarity=0.465  Sum_probs=62.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.+.|.|.+.+. .+.+.|+|+|.++....+..+..         ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~---------~~L~I~~~~~~DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG---------EEVQIKDAVPRDSGLYACVTSSPSGSDT   72 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC---------CEEEECCCChhhCEEEEEEEeCCCCccc
Confidence            3467899999999999775 56899999999987665554431         1799999999999999999999988877


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|+|
T Consensus        73 ~~~~v~V   79 (79)
T cd04973          73 TYFSVNV   79 (79)
T ss_pred             EEEEEeC
Confidence            7666654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=3.6e-12  Score=92.05  Aligned_cols=70  Identities=23%  Similarity=0.358  Sum_probs=54.1

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCC-ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSD-RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      .+.|.+.|.|.      |.++|+|+|.++..+. ++.+.  ..+      .+|.|.+++.+|+|.|+|.|.|..|...++
T Consensus         2 ~L~C~~~g~P~------p~v~W~k~g~~l~~~~~~~~~~--~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   67 (77)
T cd05760           2 TLRCHIDGHPR------PTYQWFRDGTPLSDGQGNYSVS--SKE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSS   67 (77)
T ss_pred             EEEEEeeecCC------CcEEEEECCEECCCCCccEEEe--CCC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence            36899999998      9999999999986543 33332  122      489999999999999999999999986544


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      ..++|
T Consensus        68 ~~~~l   72 (77)
T cd05760          68 QNFTL   72 (77)
T ss_pred             ceEEE
Confidence            33333

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=5.9e-12  Score=91.46  Aligned_cols=78  Identities=24%  Similarity=0.576  Sum_probs=63.8

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ....+.+|+.+.|.|.+.+. .+.+.|+++|.++....++..    .+.    .|.|.+++.+|+|.|+|.|.|..|...
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~----~~~----~L~I~~~~~~DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI----TGE----EVQIKDAVPRDSGLYACVTSSPSGSDT   72 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE----eCC----EEEECCCChhhCEEEEEEEeCCCCccc
Confidence            34567899999999999986 568999999999877655433    122    799999999999999999999998887


Q ss_pred             EEEEEEE
Q psy670          399 ANLTLNI  405 (540)
Q Consensus       399 ~~~~l~V  405 (540)
                      ..+.|+|
T Consensus        73 ~~~~v~V   79 (79)
T cd04973          73 TYFSVNV   79 (79)
T ss_pred             EEEEEeC
Confidence            7777654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.35  E-value=1.4e-11  Score=91.89  Aligned_cols=80  Identities=19%  Similarity=0.404  Sum_probs=63.6

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +..+.+.+|+.++|.|.+.|. .|.+.|++++..+.... .  ....++.    +|.|.+++.+|+|.|+|.|.|..|..
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~--~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-L--QLSNDNR----TLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-E--EEeCCCC----EEEECcCChhhCEEEEEEEEcCCCCE
Confidence            345678899999999999999 99999999999876432 2  2222222    79999999999999999999999975


Q ss_pred             -EEEEEEEE
Q psy670          398 -NANLTLNI  405 (540)
Q Consensus       398 -~~~~~l~V  405 (540)
                       +..+.|.|
T Consensus        82 ~S~~~~L~V   90 (91)
T cd05740          82 TSDPYILNV   90 (91)
T ss_pred             EeeeEEEEe
Confidence             45666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.35  E-value=1e-11  Score=90.02  Aligned_cols=75  Identities=27%  Similarity=0.360  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN  196 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  196 (540)
                      |+.+.|.|.+.|.|.|.+.|+++|..+..........   ...   ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~---~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRR---VDG---GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEE---ccC---CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            7889999999999999999999999886544321110   011   2799999999999999999999999998888887


Q ss_pred             E
Q psy670          197 F  197 (540)
Q Consensus       197 v  197 (540)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.35  E-value=1e-11  Score=94.18  Aligned_cols=86  Identities=24%  Similarity=0.455  Sum_probs=63.8

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC-----CCCCCeeEEEE
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-----RKEDTGLYKCN  389 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~  389 (540)
                      ...|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+............++     .|.|..+     ..+|.|.|+|.
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C~   77 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQCV   77 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEEE
Confidence            3455666778899999999999999999999999998876543222222232     3455444     68899999999


Q ss_pred             EEcC-Ceee-EEEEEEEE
Q psy670          390 IKNF-HGEL-NANLTLNI  405 (540)
Q Consensus       390 a~n~-~g~~-~~~~~l~V  405 (540)
                      |.|. .|.. ++.+.|.|
T Consensus        78 a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          78 AQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EECCccCcEEEeeeEEeC
Confidence            9999 8876 55666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.35  E-value=4.5e-12  Score=89.45  Aligned_cols=68  Identities=26%  Similarity=0.564  Sum_probs=57.2

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      |.|.|.+.|.|.|.+.|+|++..+....+..+...        ..|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE--------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC--------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            57999999999999999999998876655544321        279999999999999999999999988777665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.34  E-value=1.2e-11  Score=86.85  Aligned_cols=68  Identities=25%  Similarity=0.493  Sum_probs=54.8

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      |+.+.|.|.+.|.|.|.|.|++++..+.......    ...    ..|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGR----NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCc----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            6789999999999999999999999886544321    111    168888874  7999999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.34  E-value=7.6e-12  Score=90.77  Aligned_cols=80  Identities=18%  Similarity=0.295  Sum_probs=61.0

Q ss_pred             CeEEEEEEEEcc--CCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          327 KLVVMECKVKAK--PMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       327 ~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      +++.|.|.+.+.  +++.+.|++||..+... ...++... ++......|.|.+++.+|+|.|+|.|.|..+..+.++.|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~-~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV-GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe-ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            468899999874  47789999999999632 11122221 111111279999999999999999999999999999999


Q ss_pred             EEEE
Q psy670          404 NIEM  407 (540)
Q Consensus       404 ~V~~  407 (540)
                      .|..
T Consensus        80 ~V~~   83 (85)
T cd05853          80 IVRG   83 (85)
T ss_pred             EEec
Confidence            9987

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.34  E-value=1.2e-11  Score=92.31  Aligned_cols=85  Identities=22%  Similarity=0.402  Sum_probs=67.8

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      .+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......  .      ....|.|.+++.+|+|.|+|.+.|
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~------~~~~L~i~~v~~~D~G~Y~C~a~N   74 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--M------SGAVLKIPNIQFEDEGTYECEAEN   74 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--E------eCCEEEECCCCcccCEEEEEEEEE
Confidence            34445666778899999999999999999999999887654433221  1      113799999999999999999999


Q ss_pred             CCCCeeeeEEEEE
Q psy670          289 EFGESNANLNLNI  301 (540)
Q Consensus       289 ~~~~~~~~~~l~v  301 (540)
                      ..|....+..|.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd04968          75 IKGKDTHQGRIYV   87 (88)
T ss_pred             CCCcEEEEEEEEE
Confidence            9999888777765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.34  E-value=8.4e-12  Score=89.91  Aligned_cols=73  Identities=30%  Similarity=0.561  Sum_probs=56.6

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEcc-CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.+.|+++|.... .....++.....+.    .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999999999999999986432 22222222222222    7999999999999999999999999998888877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.34  E-value=1.2e-11  Score=86.83  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=54.4

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      |++++|.|.+.|.|.|.|.|+|++..+....+....         ...|.|.++  .|+|.|+|.|.|..|.....+.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~---------~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVG---------RNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecC---------ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            688999999999999999999999887654432211         126888886  47999999999999987776665

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.34  E-value=1.4e-11  Score=89.12  Aligned_cols=75  Identities=25%  Similarity=0.503  Sum_probs=61.8

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +.|.|.+.|.|.|.+.|++++..+.......+....++.    .|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            368999999999999999999988765443333333332    799999999999999999999999999999998853

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=7.8e-12  Score=88.76  Aligned_cols=70  Identities=27%  Similarity=0.512  Sum_probs=56.5

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      +.|.|.+.|.|.|.+.|+|++..+..... ....    .   ..+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~~----~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKLN----N---NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEEc----C---CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            47999999999999999999887654321 1111    1   128999999999999999999999999888888776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.33  E-value=2.8e-11  Score=93.21  Aligned_cols=95  Identities=22%  Similarity=0.466  Sum_probs=66.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc---CceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES---SKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+...   ..........+......+....++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            356777788888999999999999999999999999999988652   11111111122222222333345789999999


Q ss_pred             EEEEcCCCC-eeeeEEEEE
Q psy670          284 CNVKNEFGE-SNANLNLNI  301 (540)
Q Consensus       284 C~~~~~~~~-~~~~~~l~v  301 (540)
                      |.+.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 555565554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.33  E-value=7.2e-12  Score=95.49  Aligned_cols=83  Identities=24%  Similarity=0.516  Sum_probs=62.9

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeC--CEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      ....+.+|++++|.|.+.|.|.|.+.|+|+  +..+..     ..++....     .....+|.|.+++.+|+|.|+|.|
T Consensus         9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-----~~~~~~L~I~~v~~~D~G~Y~C~A   83 (98)
T cd05870           9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-----QHGESSLHIKDVKLSDSGRYDCEA   83 (98)
T ss_pred             ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-----cCCeeEEEEeeCCcCCCEEEEEEE
Confidence            346788999999999999999999999994  443322     12222211     112248999999999999999999


Q ss_pred             EcCCceeEEEEEEEE
Q psy670          183 CNSIGESNANIALNF  197 (540)
Q Consensus       183 ~~~~~~~~~~~~l~v  197 (540)
                      .|..|.....+.|.|
T Consensus        84 ~N~~G~~~~~~~l~~   98 (98)
T cd05870          84 ASRIGGHQKSMYLDI   98 (98)
T ss_pred             eccCCcceeEEEEeC
Confidence            999998888777754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.33  E-value=4.3e-12  Score=92.04  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=60.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeeccc---CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM---SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS   83 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~   83 (540)
                      .+.|.+.+.|-    +.+.|.|+|||++|..   +.+|.+....+     ..+.|+|.+++.+|+|.|+|.|.|..+..+
T Consensus         4 ~l~C~v~~d~~----l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~-----~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853           4 VLPCQVSHDHS----LDIVFTWSFNGHLIDFQKDGDHFERVGGQD-----SAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             EEEEEeccCCC----CCcEEEEEECCEECcccCCCccEEEeccCC-----CCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            47899987442    2289999999999963   23443321101     124899999999999999999999999999


Q ss_pred             eeEEEEEeecC
Q psy670           84 STVNLNFSEED   94 (540)
Q Consensus        84 ~~~~l~v~~~~   94 (540)
                      .++.|.|.++|
T Consensus        75 a~a~L~V~~pP   85 (85)
T cd05853          75 AAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEecCC
Confidence            99999998654

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=5e-12  Score=91.12  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=55.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeec-ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLL-KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      -+.|.+.|.|.      |.++|+|+|... ......++....++      ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         2 ~l~C~~~G~P~------P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~   69 (75)
T cd05763           2 RLECAATGHPT------PQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISAN   69 (75)
T ss_pred             EeEeecccccC------CEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEee
Confidence            36899999999      999999998643 22222222222222      479999999999999999999999998888


Q ss_pred             EEEEE
Q psy670           86 VNLNF   90 (540)
Q Consensus        86 ~~l~v   90 (540)
                      +.|.|
T Consensus        70 ~~l~V   74 (75)
T cd05763          70 ATLTV   74 (75)
T ss_pred             EEEEE
Confidence            88776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.33  E-value=1e-11  Score=88.97  Aligned_cols=72  Identities=26%  Similarity=0.488  Sum_probs=56.3

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  405 (540)
                      ++|.|.+.|.|.|.|.|++++..+......+.....++     .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999999999999999998864322222222222     69999999999999999999999974 66777766

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.33  E-value=9.6e-12  Score=91.79  Aligned_cols=78  Identities=29%  Similarity=0.597  Sum_probs=62.7

Q ss_pred             EeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+........    .  ....+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~----~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES----R--KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee----c--CceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence            456799999999999999999999999987755433211    1  1123799999999999999999999999888887


Q ss_pred             EEEE
Q psy670          402 TLNI  405 (540)
Q Consensus       402 ~l~V  405 (540)
                      .|.|
T Consensus        79 ~v~v   82 (82)
T cd05856          79 KVDV   82 (82)
T ss_pred             EEeC
Confidence            7764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.33  E-value=5.8e-12  Score=91.39  Aligned_cols=70  Identities=27%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      ++|.+.|.|.      |.++|++++..+....++.+.....      .+.|+|.+++.+|+|.|+|.+.|..|.......
T Consensus         6 l~C~~~g~P~------p~v~W~~~~~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   73 (78)
T cd05743           6 FTCVATGVPT------PIINWRLNWGHVPDSARVSITSEGG------YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD   73 (78)
T ss_pred             EEEEEEEecC------CEEEEEECCeECCCCCCEEEEECCC------EEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence            6899999998      9999999999887777766554322      368999999999999999999999998766554


Q ss_pred             EE
Q psy670           88 LN   89 (540)
Q Consensus        88 l~   89 (540)
                      +.
T Consensus        74 ~~   75 (78)
T cd05743          74 GI   75 (78)
T ss_pred             EE
Confidence            43

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.32  E-value=3.2e-11  Score=90.27  Aligned_cols=85  Identities=26%  Similarity=0.542  Sum_probs=61.4

Q ss_pred             CeEEeCCceEEeeC---CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670          312 PTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~~---g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~  387 (540)
                      |.|...|....+.+   |..+.|.|.+.|.|.|.++|++++..+..... +...  .++    .|.|.++. .+|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~--~~g----~L~I~~~~~~~D~G~Y~   74 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSM--VGG----NLVINNPDKYKDAGRYV   74 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEE--ECC----EEEECcCCcCCCCEEEE
Confidence            45555565554433   44799999999999999999999998854322 2221  222    79998875 68999999


Q ss_pred             EEEEcCCeeeE-EEEEE
Q psy670          388 CNIKNFHGELN-ANLTL  403 (540)
Q Consensus       388 C~a~n~~g~~~-~~~~l  403 (540)
                      |.|.|..|... +.++|
T Consensus        75 C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          75 CIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEeCcceEEEccEEE
Confidence            99999999763 34444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.32  E-value=1.5e-11  Score=91.00  Aligned_cols=78  Identities=14%  Similarity=0.311  Sum_probs=60.6

Q ss_pred             CeEEEEEEEEccCCC--eEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          327 KLVVMECKVKAKPMP--EIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       327 ~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      +++.|.|.+.|.|.|  .+.|+++|..+.....   +........   ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~   77 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDS---NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccc---cceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence            468999999999987  6799999998764321   111111111   22799999999999999999999999999999


Q ss_pred             EEEEEE
Q psy670          402 TLNIEM  407 (540)
Q Consensus       402 ~l~V~~  407 (540)
                      .|.|..
T Consensus        78 ~l~V~~   83 (85)
T cd04970          78 DLIVRG   83 (85)
T ss_pred             EEEEEC
Confidence            999986

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.32  E-value=1.7e-11  Score=91.74  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             CCeEEEEEEEEccCCCeEEEEEC----CEEccCCCceEEEEEecCC-----eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLKGD-----KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      |+.+.|.|.+.|.|.|.|.|+++    |..+.............+.     ....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    4444333222222111111     11248999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy670          397 LNANLTLNI  405 (540)
Q Consensus       397 ~~~~~~l~V  405 (540)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            998888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.32  E-value=2.1e-11  Score=90.59  Aligned_cols=81  Identities=27%  Similarity=0.488  Sum_probs=63.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.....     ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-----g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKE-----GVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeC-----CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            456789999999999999998 999998 5667765555544321     112489999999999999999999999875


Q ss_pred             -EEEEEEEE
Q psy670          190 -NANIALNF  197 (540)
Q Consensus       190 -~~~~~l~v  197 (540)
                       ...+.|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             56666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.31  E-value=5e-11  Score=92.33  Aligned_cols=98  Identities=17%  Similarity=0.378  Sum_probs=71.5

Q ss_pred             CCCeeccCCceee----cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCC-CCCc
Q psy670          206 FAPSFIEKPRIIP----NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPI-GPDS  279 (540)
Q Consensus       206 ~~p~~~~~~~~~~----~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~  279 (540)
                      ++|.|...+....    ...|..+.|.|.+.|.|.+.+.|++++..+.... ++............+.|.|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            4566655444211    1357899999999999999999999999886432 33322222223334689999997 5899


Q ss_pred             EEEEEEEEcCCCCeeeeEEEEEee
Q psy670          280 GTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       280 g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      |.|+|.|.|..|.....+.|.+..
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecC
Confidence            999999999999998888888765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.30  E-value=3.5e-11  Score=90.18  Aligned_cols=84  Identities=30%  Similarity=0.539  Sum_probs=62.1

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-  395 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-  395 (540)
                      |....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....+....  . .....++|.|.+++.+|+|.|+|.|.|..| 
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~--~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV--Q-NDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEE--e-CCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            44567889999999999999974 999997 56655543443221  1 222345899999999999999999999854 


Q ss_pred             eeEEEEEEEE
Q psy670          396 ELNANLTLNI  405 (540)
Q Consensus       396 ~~~~~~~l~V  405 (540)
                      ....++.|.|
T Consensus        83 ~~~~sv~l~~   92 (92)
T cd04977          83 ESEATVNLKI   92 (92)
T ss_pred             cceeEEEEEC
Confidence            4566666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.30  E-value=1e-11  Score=91.90  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             cccceeeeCcceeEEeecceeeeeecCeecccCC---ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670            6 ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSD---RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         6 ~~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   82 (540)
                      ..+.|.+.|.|.    |...+.|+|+|+++..+.   +++......     ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 ~~L~C~~~g~P~----p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~   73 (85)
T cd04970           3 ITLQCHASHDPT----LDLTFTWSFNGVPIDFDKDGGHYRRVGGKD-----SNGDLMIRNAQLKHAGKYTCTAQTVVDSL   73 (85)
T ss_pred             EEEEEEEecCCC----CCeEEEEEECCeEeeccCCCccEEEEeccc-----ccceEEEccCCHHhCeeeEEEEecCCCcE
Confidence            347899999997    223789999999886432   222111111     13589999999999999999999999999


Q ss_pred             eeeEEEEEeec
Q psy670           83 SSTVNLNFSEE   93 (540)
Q Consensus        83 ~~~~~l~v~~~   93 (540)
                      +.++.|.|..+
T Consensus        74 ~~~~~l~V~~p   84 (85)
T cd04970          74 SASADLIVRGP   84 (85)
T ss_pred             EEEEEEEEECC
Confidence            99999998764

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.30  E-value=2.4e-11  Score=87.34  Aligned_cols=73  Identities=29%  Similarity=0.540  Sum_probs=58.8

Q ss_pred             CCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      |+.+.|.|.+.|.|.+.+.|++ ++..+....+......        .+|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN--------GTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC--------CEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            7889999999999999999997 6666655443332211        179999999999999999999999988888777


Q ss_pred             EE
Q psy670          196 NF  197 (540)
Q Consensus       196 ~v  197 (540)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.30  E-value=2.1e-11  Score=91.07  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECC----EEccCCCceEEEEEec---C--CeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEG----KELQQTDRISWNVTLK---G--DKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~----~~~~~~~~~~~~~~~~---~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      |+.+.|.|.+.|.|.|.|+|++++    ..+.............   .  ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999964    3332211111111110   0  011127999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy670          397 LNANLTLNI  405 (540)
Q Consensus       397 ~~~~~~l~V  405 (540)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            999998887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.30  E-value=2e-11  Score=90.08  Aligned_cols=78  Identities=27%  Similarity=0.500  Sum_probs=62.3

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      ....|+++.|.|.+.|.|.+.+.|++++..+.........       .....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-------CceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            3567999999999999999999999999877543322111       112489999999999999999999999988777


Q ss_pred             EEEEE
Q psy670          193 IALNF  197 (540)
Q Consensus       193 ~~l~v  197 (540)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            77654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=8.9e-12  Score=88.12  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=55.8

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      |.+.|+|++..+.. .++.+.  .+       .+|+|.+++.+|+|.|+|.+.|..|....++
T Consensus         2 ~l~C~~~g~P~------p~v~W~k~~~~~~~-~~~~~~--~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   65 (69)
T cd05725           2 EFQCEVGGDPV------PTVLWRKEDGELPK-GRAEIL--DD-------KSLKIRNVTAGDEGSYTCEAENMVGKIEASA   65 (69)
T ss_pred             EEEEECccCCC------CEEEEEECCccCCC-CcEEEe--eC-------CEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence            36899999999      99999999887754 344432  22       3899999999999999999999999988887


Q ss_pred             EEEE
Q psy670           87 NLNF   90 (540)
Q Consensus        87 ~l~v   90 (540)
                      .|.|
T Consensus        66 ~l~V   69 (69)
T cd05725          66 SLTV   69 (69)
T ss_pred             EEEC
Confidence            7754

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=1.9e-11  Score=87.20  Aligned_cols=70  Identities=26%  Similarity=0.551  Sum_probs=56.8

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.+.|++++..+.... ..  ....+    ..|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFN----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCC----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999999999999999988775432 11  11111    27999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.30  E-value=2.6e-11  Score=85.00  Aligned_cols=70  Identities=30%  Similarity=0.499  Sum_probs=54.9

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|++.|+++|.++..... ..  ..++.    +|.|.+++.+|+|.|+|.|.|......+...+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~--~~~~~----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RY--HVDGY----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EE--EeCCC----EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            46899999999999999999999876432 11  12332    7999999999999999999998776665555443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=2.4e-11  Score=87.35  Aligned_cols=73  Identities=32%  Similarity=0.604  Sum_probs=58.1

Q ss_pred             CCeEEEEEEEEccCCCeEEEEE-CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+..  ....+     +|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL--VYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE--EecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            6889999999999999999997 566555443322  11222     789999999999999999999999988888776


Q ss_pred             E
Q psy670          405 I  405 (540)
Q Consensus       405 V  405 (540)
                      |
T Consensus        74 v   74 (74)
T cd05764          74 I   74 (74)
T ss_pred             C
Confidence            5

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=1.8e-11  Score=86.56  Aligned_cols=69  Identities=28%  Similarity=0.639  Sum_probs=56.1

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +.|.|.+.|.|.|.+.|++++..+... +...  . .+.    .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~-~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEI--L-DDK----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEE--e-eCC----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            478999999999999999998776443 2222  1 222    7999999999999999999999999988888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.29  E-value=2.4e-11  Score=90.99  Aligned_cols=77  Identities=25%  Similarity=0.559  Sum_probs=61.0

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccC------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQ------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      |+.+.|.|.+.|.|.|.+.|+++|..+..      ....++....++     .|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            68899999999999999999998765311      111122222122     7999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy670          400 NLTLNIEM  407 (540)
Q Consensus       400 ~~~l~V~~  407 (540)
                      ++.|.|..
T Consensus        76 ~~~l~V~~   83 (90)
T cd05726          76 KAYLEVTD   83 (90)
T ss_pred             EEEEEEee
Confidence            99999986

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.28  E-value=2.8e-11  Score=87.48  Aligned_cols=75  Identities=23%  Similarity=0.402  Sum_probs=57.9

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .|....+..|+.+.|.|.+.|.|.| .|.|+++|.++.....      ..+    +.|.|..+  .|+|.|+|.|+|..|
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~------~~~----s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA------PSP----SVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC------CCC----CEEEEccc--cCCeEEEEEEEeccC
Confidence            4566788899999999999999999 7999999998864111      111    27888876  478999999999999


Q ss_pred             eeE-EEEEE
Q psy670          396 ELN-ANLTL  403 (540)
Q Consensus       396 ~~~-~~~~l  403 (540)
                      ... +.++|
T Consensus        72 ~~~s~~a~~   80 (81)
T cd05749          72 VTTSRTGTV   80 (81)
T ss_pred             cEEeeeEEe
Confidence            654 34443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.27  E-value=1.4e-11  Score=88.99  Aligned_cols=71  Identities=20%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             ccceeeeC-cceeEEeecceeeeeecCeecccCCceEE-EEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670            7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSS-TLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS   84 (540)
Q Consensus         7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~   84 (540)
                      .+.|.+.| .|.      |.+.|+|+|.++..+.+... ....+.    ..++|.|.+++.+|+|.|+|.|.|..|....
T Consensus         2 ~l~C~~~g~~P~------p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750           2 VLKCEATSEYPS------LRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTV   71 (75)
T ss_pred             EEEEEccCCCCC------ceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence            37899999 898      99999999999976654331 111111    2368999999999999999999999998766


Q ss_pred             eEE
Q psy670           85 TVN   87 (540)
Q Consensus        85 ~~~   87 (540)
                      ++.
T Consensus        72 ~~~   74 (75)
T cd05750          72 TAN   74 (75)
T ss_pred             EEe
Confidence            553

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.27  E-value=1.1e-10  Score=89.04  Aligned_cols=92  Identities=15%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeecc--CceEEEEecCCCeEEEEEEEeCCCC-CCcEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKES--SKIKIIVNEQDDTYEIICEITDPIG-PDSGTY  282 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y  282 (540)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+..........+.|.|.++.. +|.|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            44443 3455667889999999999999998 69999999888654  3444433322334456899999999 458999


Q ss_pred             EEEEEcCCCCeeeeEEE
Q psy670          283 RCNVKNEFGESNANLNL  299 (540)
Q Consensus       283 ~C~~~~~~~~~~~~~~l  299 (540)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999987776554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.27  E-value=2.9e-11  Score=90.57  Aligned_cols=75  Identities=24%  Similarity=0.432  Sum_probs=60.4

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeec--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIE--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      |+.+.|.|.+.|.|.+.+.|+|++..+.        ...++....     .   ..|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-----~---~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-----T---GDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-----C---CeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            7889999999999999999999876431        122222211     1   27999999999999999999999999


Q ss_pred             eEEEEEEEEec
Q psy670          189 SNANIALNFQG  199 (540)
Q Consensus       189 ~~~~~~l~v~~  199 (540)
                      ....+.|.|.+
T Consensus        73 ~~~~~~l~V~~   83 (90)
T cd05726          73 ILTKAYLEVTD   83 (90)
T ss_pred             eEEEEEEEEee
Confidence            99999999885

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.27  E-value=2.5e-11  Score=90.87  Aligned_cols=82  Identities=20%  Similarity=0.337  Sum_probs=62.6

Q ss_pred             eEEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          320 IRSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ...+.+|+.+.|.|.+.+     .|.+.|.|++++..+.............+.    .|.|.++..+|+|.|+|.+.|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~----~L~I~~~~~~DsG~Y~C~~~N~~   83 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD----LLWFLPAALEDSGLYTCVVRNST   83 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC----eEEEccCCcccCeEEEEEEcCCC
Confidence            345678999999999998     688899999998765432111111122222    79999999999999999999999


Q ss_pred             eeeEEEEEEEE
Q psy670          395 GELNANLTLNI  405 (540)
Q Consensus       395 g~~~~~~~l~V  405 (540)
                      |....++.|.|
T Consensus        84 g~~~~~~~L~v   94 (94)
T cd05756          84 YCMKVSISLTV   94 (94)
T ss_pred             ccEEEEEEEEC
Confidence            99888887765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.27  E-value=4.8e-11  Score=89.27  Aligned_cols=81  Identities=27%  Similarity=0.370  Sum_probs=58.6

Q ss_pred             CCeEEEEEEEeecCCCceEEEeC----CEeecCCCceE--EEEee--cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          117 GDLLVMECVLEASPMPDIIWYQG----TKVIEDTGRIK--MSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~--~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      |++++|.|.+.|.|.|.|.|+|+    +..+.......  .....  .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78899999999999999999984    44443222111  11100  001112348999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy670          189 SNANIALNF  197 (540)
Q Consensus       189 ~~~~~~l~v  197 (540)
                      ....+.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.26  E-value=5.8e-11  Score=88.47  Aligned_cols=78  Identities=24%  Similarity=0.481  Sum_probs=62.0

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-  189 (540)
                      ...+.+|++++|.|.+.|. .+.+.|++++..+... +..+...    .   ..|.|.+++.+|+|.|.|.|.|..|.. 
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~----~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSND----N---RTLTFNNVTRSDTGHYQCEASNEVSNMT   82 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCC----C---CEEEECcCChhhCEEEEEEEEcCCCCEE
Confidence            3467899999999999999 9999999999887543 3322211    1   279999999999999999999999874 


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      +..+.|.|
T Consensus        83 S~~~~L~V   90 (91)
T cd05740          83 SDPYILNV   90 (91)
T ss_pred             eeeEEEEe
Confidence            55666665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.26  E-value=3e-11  Score=84.72  Aligned_cols=68  Identities=18%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      +.|.|.+.|.|.|.+.|+|+|.++..... .....    .   .+|.|.+++.+|+|.|+|.+.+..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~----~---~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD----G---YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC----C---CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            47899999999999999999998865422 11111    1   179999999999999999999976554444333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.26  E-value=5.3e-11  Score=88.60  Aligned_cols=81  Identities=28%  Similarity=0.547  Sum_probs=62.6

Q ss_pred             CceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          318 PKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      |....+.+|+.+.|.|.+ .+.|.|.+.|+++|..+...... ..... ++    .|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~-~~~~~-~~----~L~I~~~~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNER-VRIVD-DG----NLLIAEARKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCC-EEEcc-CC----EEEEeECCcccCEEEEEEEEeccCc
Confidence            445677899999999998 68999999999999988763321 11111 12    7999999999999999999999887


Q ss_pred             e-EEEEEEE
Q psy670          397 L-NANLTLN  404 (540)
Q Consensus       397 ~-~~~~~l~  404 (540)
                      . +..+.|.
T Consensus        77 ~~s~~~~l~   85 (86)
T cd05724          77 RESAAARLS   85 (86)
T ss_pred             eeeeeEEEE
Confidence            5 4455544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.26  E-value=1e-10  Score=88.02  Aligned_cols=81  Identities=21%  Similarity=0.444  Sum_probs=59.6

Q ss_pred             CeeccCCceeecC---CCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670          208 PSFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR  283 (540)
Q Consensus       208 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~  283 (540)
                      |.|+..|..+.+.   +|+.+.|.|.+.|.|.++++|+++|..+...........+      ..|.|.++. .+|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------g~L~i~~~~~~~D~G~Y~   75 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID------GNLIISNPSEVKDSGRYQ   75 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC------CeEEEccCCccCcCEEEE
Confidence            3444455554432   4789999999999999999999999988654333332221      167888874 68999999


Q ss_pred             EEEEcCCCCee
Q psy670          284 CNVKNEFGESN  294 (540)
Q Consensus       284 C~~~~~~~~~~  294 (540)
                      |.|.|..|...
T Consensus        76 C~A~N~~G~~~   86 (94)
T cd05848          76 CLATNSIGSIL   86 (94)
T ss_pred             EEEEcCCCeEE
Confidence            99999998763

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.26  E-value=1.5e-10  Score=85.02  Aligned_cols=81  Identities=16%  Similarity=0.357  Sum_probs=58.6

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe--eeEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG--ELNANLTL  403 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l  403 (540)
                      |++++|.|.+.+.|.+.+.|++.++....................++|.|.+++.+|+|.|+|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7889999999999999999998776532211111111222333456899999999999999999999876  55666666


Q ss_pred             EEE
Q psy670          404 NIE  406 (540)
Q Consensus       404 ~V~  406 (540)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.26  E-value=3.4e-11  Score=85.94  Aligned_cols=70  Identities=33%  Similarity=0.703  Sum_probs=56.3

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      +.|.|.+.|.|.|.+.|+|++..+... +.....       ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            479999999999999999998876533 221111       1227999999999999999999999999888888776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.25  E-value=2e-10  Score=85.72  Aligned_cols=92  Identities=22%  Similarity=0.384  Sum_probs=71.8

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCC--CceEEEEEecCCeeEEEEEEcCCCCCC-CeeE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQT--DRISWNVTLKGDKYHIRLEVKDPRKED-TGLY  386 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y  386 (540)
                      ||.+ .......+.+|+.+.|.|.+.+.|+| .|.|.+++..+...  .++.+..........++|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4444 45566778899999999999888887 68999988877553  455554444455567799999998777 7999


Q ss_pred             EEEEEcCCeeeEEEEEE
Q psy670          387 KCNIKNFHGELNANLTL  403 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l  403 (540)
                      .|.|.|..|.....++|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999999888776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.25  E-value=2.7e-11  Score=87.05  Aligned_cols=66  Identities=23%  Similarity=0.494  Sum_probs=53.8

Q ss_pred             eEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          313 TFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      .+...|....+.+|++++|+|.+.+.|. ..+.|+++|..+...          +.    .|.|.++ .+|+|.|+|.|.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------~~----~l~i~~~-~~dsG~Y~C~a~   66 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------TN----SYRIRAA-NNDSGEYRCQTQ   66 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc----------CC----eEEEeec-ccCCEEeEEECC
Confidence            4455667778899999999999998876 479999999887321          11    7889898 999999999998


Q ss_pred             cC
Q psy670          392 NF  393 (540)
Q Consensus       392 n~  393 (540)
                      |.
T Consensus        67 ~~   68 (78)
T cd05752          67 GS   68 (78)
T ss_pred             CC
Confidence            85

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.24  E-value=8.1e-11  Score=86.87  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=59.5

Q ss_pred             CCeEEEEEEEeec--CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEE
Q psy670          117 GDLLVMECVLEAS--PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA  194 (540)
Q Consensus       117 G~~v~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  194 (540)
                      |+++.|.|.+.+.  |.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  78899999887655322111100011112234568999999999999999999999988877777


Q ss_pred             EEE
Q psy670          195 LNF  197 (540)
Q Consensus       195 l~v  197 (540)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.23  E-value=6.5e-11  Score=85.49  Aligned_cols=72  Identities=24%  Similarity=0.551  Sum_probs=56.0

Q ss_pred             EEEEEEEEc-cCCCeEEEEECCEEccCCCceEE-EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISW-NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      +.|.|.+.| .|.|.+.|+++|..+........ ....  ......|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            468999999 99999999999998876544321 1111  112348999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.23  E-value=9.3e-11  Score=86.55  Aligned_cols=80  Identities=18%  Similarity=0.343  Sum_probs=60.3

Q ss_pred             CCeEEEEEEEEcc--CCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          326 GKLVVMECKVKAK--PMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       326 g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+....... ...........+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7889999999998  788999998877653321111 0011112234558999999999999999999999999888888


Q ss_pred             EEE
Q psy670          403 LNI  405 (540)
Q Consensus       403 l~V  405 (540)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.22  E-value=8.9e-11  Score=87.70  Aligned_cols=81  Identities=27%  Similarity=0.381  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCC----EeecCCCc--eEEEEe--ecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGT----KVIEDTGR--IKMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~----~~~~~~~~--~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+.....  ......  ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999964    22221111  111111  0011111237999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy670          189 SNANIALNF  197 (540)
Q Consensus       189 ~~~~~~l~v  197 (540)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.22  E-value=3.2e-11  Score=87.12  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=50.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~   82 (540)
                      .+.|.+.|.|.      |.|+|+|||.++......++......      ++|.|.+++.    +|+|.|+|.|.|..|..
T Consensus         2 ~l~C~~~G~P~------P~v~W~k~g~~l~~~~~~~~~~~~~~------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           2 VIKCEAKGNPP------PTFSWTRNGTHFDPEKDPRVTMKPDS------GTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             EEEeeCcccCC------CeEEEEECCeECCCCCCCCEEEeCCC------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            36899999999      99999999999865443344333222      4888988864    79999999999999875


Q ss_pred             ee
Q psy670           83 SS   84 (540)
Q Consensus        83 ~~   84 (540)
                      .+
T Consensus        70 ~s   71 (77)
T cd05733          70 IS   71 (77)
T ss_pred             Ec
Confidence            43

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.22  E-value=6.9e-11  Score=85.34  Aligned_cols=66  Identities=20%  Similarity=0.437  Sum_probs=49.6

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC----CCCeeEEEEEEcCCeeeE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK----EDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~  398 (540)
                      +.|.|.+.|.|.|.++|+++|..+.......+......+    .|.|..+..    +|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            478999999999999999999988654332232222222    688877653    689999999999999754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=3.8e-11  Score=89.94  Aligned_cols=80  Identities=24%  Similarity=0.351  Sum_probs=61.6

Q ss_pred             CccccCCCeEEEEEEEee-----cCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEA-----SPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|||++..+...  ...++...    .   ..|.|.++..+|+|.|+|.+.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~----~---~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ----K---DLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec----C---CeEEEccCCcccCeEEEEEEc
Confidence            456779999999999988     688899999998764321  11222111    1   279999999999999999999


Q ss_pred             cCCceeEEEEEEEE
Q psy670          184 NSIGESNANIALNF  197 (540)
Q Consensus       184 ~~~~~~~~~~~l~v  197 (540)
                      |..|.....+.|.|
T Consensus        81 N~~g~~~~~~~L~v   94 (94)
T cd05756          81 NSTYCMKVSISLTV   94 (94)
T ss_pred             CCCccEEEEEEEEC
Confidence            99998888877764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.21  E-value=1.2e-10  Score=83.89  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=48.8

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC----CCCeeEEEEEEcCCeeeEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK----EDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~  399 (540)
                      +.|.|.+.|.|.|+|+|+++|..+.............++    +|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            468999999999999999999987433322222222222    677766654    3789999999999997644

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.21  E-value=3.2e-10  Score=85.40  Aligned_cols=82  Identities=21%  Similarity=0.390  Sum_probs=59.2

Q ss_pred             CeeccCCceeecCC---CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670          208 PSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR  283 (540)
Q Consensus       208 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~  283 (540)
                      |.|...|....+.+   |+.+.|.|.+.|.|.+.++|+++|..+.......+....      ..|.|.++. ..|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------g~L~I~~~~~~~D~G~Y~   75 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA------GNLVINNPQKARDAGSYQ   75 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC------CeEEEccCCccCcCEEEE
Confidence            34455555554444   468999999999999999999999988644322222221      257887755 58999999


Q ss_pred             EEEEcCCCCeee
Q psy670          284 CNVKNEFGESNA  295 (540)
Q Consensus       284 C~~~~~~~~~~~  295 (540)
                      |.|.|..|....
T Consensus        76 C~A~N~~G~~~s   87 (94)
T cd05850          76 CLAINRCGTVVS   87 (94)
T ss_pred             EEEEcCcCcEEE
Confidence            999999997643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.21  E-value=1.5e-10  Score=86.77  Aligned_cols=81  Identities=25%  Similarity=0.443  Sum_probs=60.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-  188 (540)
                      ...+..|+++.|.|.+.|.|. .+.|++ ++..+....+.....    .....++|+|.+++.+|+|.|+|.+.|..|. 
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            356889999999999999875 999998 566665444433321    1223458999999999999999999998654 


Q ss_pred             eEEEEEEE
Q psy670          189 SNANIALN  196 (540)
Q Consensus       189 ~~~~~~l~  196 (540)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            46666654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.21  E-value=1.2e-10  Score=86.78  Aligned_cols=78  Identities=28%  Similarity=0.510  Sum_probs=60.7

Q ss_pred             CccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ...+.+|+++.|.|.+ .|.|.+.+.|++++..+... .+.....        ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEeccCc
Confidence            3567799999999998 78999999999999987653 2332221        127999999999999999999999887


Q ss_pred             e-EEEEEEE
Q psy670          189 S-NANIALN  196 (540)
Q Consensus       189 ~-~~~~~l~  196 (540)
                      . +..+.|.
T Consensus        77 ~~s~~~~l~   85 (86)
T cd05724          77 RESAAARLS   85 (86)
T ss_pred             eeeeeEEEE
Confidence            5 4444443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=9.1e-11  Score=86.18  Aligned_cols=77  Identities=30%  Similarity=0.598  Sum_probs=56.2

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCE---Ec-cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGK---EL-QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+ ..............   ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN---IGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc---ccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            6889999999999999999999742   11 11111000000011   12799999999999999999999999998888


Q ss_pred             EEEE
Q psy670          402 TLNI  405 (540)
Q Consensus       402 ~l~V  405 (540)
                      .|.|
T Consensus        78 ~l~v   81 (81)
T cd05765          78 PLSV   81 (81)
T ss_pred             EEeC
Confidence            8865

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.20  E-value=5.6e-11  Score=85.53  Aligned_cols=66  Identities=18%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~   82 (540)
                      .++|.+.|.|.      |.|+|+|+|..+......++....++      ++|.|.+++.    +|+|.|+|.|.|..|..
T Consensus         2 ~l~C~~~G~P~------P~v~W~k~g~~~~~~~~~~~~~~~~~------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           2 IIECEAKGNPV------PTFQWTRNGKFFNVAKDPRVSMRRRS------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             EEEEeccccCC------CEEEEEECCEEccCcCCCcEEEeCCC------ceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            47899999999      99999999997643322223322222      4888987642    47999999999999965


Q ss_pred             ee
Q psy670           83 SS   84 (540)
Q Consensus        83 ~~   84 (540)
                      .+
T Consensus        70 ~s   71 (77)
T cd05875          70 LS   71 (77)
T ss_pred             EE
Confidence            43

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.20  E-value=2.8e-10  Score=85.37  Aligned_cols=81  Identities=25%  Similarity=0.557  Sum_probs=58.8

Q ss_pred             CeEEeCCceEEee---CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEE
Q psy670          312 PTFIEKPKIRSEQ---GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~---~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~  387 (540)
                      |.|...|....+.   .|..+.|.|.+.|.|.|.++|++++..+..........  .++    .|.|.++. .+|+|.|+
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~--~~~----~L~i~~~~~~~d~G~Y~   75 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL--VGG----NLVISNPSKAKDAGRYQ   75 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE--ECC----EEEEecCCccCCCEEEE
Confidence            3455555554443   34679999999999999999999999885433322222  122    68888776 48999999


Q ss_pred             EEEEcCCeeeE
Q psy670          388 CNIKNFHGELN  398 (540)
Q Consensus       388 C~a~n~~g~~~  398 (540)
                      |.|.|..|...
T Consensus        76 C~a~N~~G~~~   86 (91)
T cd04967          76 CLASNIVGTVL   86 (91)
T ss_pred             EEEEcCCCEEE
Confidence            99999998754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.20  E-value=6.7e-11  Score=85.14  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=49.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc----CCCeeEEEEEEccCcce
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK----SDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~   82 (540)
                      .+.|.+.|.|.      |+|+|+|+|.++.......+.....+      ++|.|..+..    .|+|.|+|.|.|..|..
T Consensus         2 ~l~C~a~G~P~------P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05874           2 VIQCEAKGKPP------PSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAA   69 (77)
T ss_pred             EEEeeCcccCC------CeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence            36899999999      99999999998854433333332222      4788877765    37899999999999976


Q ss_pred             ee
Q psy670           83 SS   84 (540)
Q Consensus        83 ~~   84 (540)
                      .+
T Consensus        70 ~s   71 (77)
T cd05874          70 VS   71 (77)
T ss_pred             Ee
Confidence            54

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.19  E-value=1.8e-10  Score=82.87  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=48.1

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC----CCCCeeEEEEEEcCCeeeEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR----KEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      +.|.|.+.|.|.|.++|+++|..+.............++    +|.|..+.    .+|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            468999999999999999999876432222222222222    68887653    24699999999999997643

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.18  E-value=6.4e-10  Score=81.64  Aligned_cols=81  Identities=19%  Similarity=0.385  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc--eeEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG--ESNANIA  194 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~  194 (540)
                      |++++|.|.+.+.|.+.+.|++.++....... .............+.|.|.+++.+|+|.|+|.+.+..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCce-EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            78999999999999999999987764322111 00111112233456899999999999999999998765  5567777


Q ss_pred             EEEe
Q psy670          195 LNFQ  198 (540)
Q Consensus       195 l~v~  198 (540)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.17  E-value=1.9e-10  Score=83.06  Aligned_cols=72  Identities=24%  Similarity=0.484  Sum_probs=53.4

Q ss_pred             EEEEEEEEc-cCCCeEEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          329 VVMECKVKA-KPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      +.|.|.+.+ .|.+.+.|+++|..+.....  ..+.....  .....|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999875 67889999999998864321  12222211  12348999999999999999999999998777654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.15  E-value=6.2e-10  Score=83.33  Aligned_cols=80  Identities=25%  Similarity=0.374  Sum_probs=57.0

Q ss_pred             CeeccCCceeecCC---CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEE
Q psy670          208 PSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYR  283 (540)
Q Consensus       208 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~  283 (540)
                      |.|...|....+.+   |..+.|.|.+.|.|.+.++|++++..+...... .....      ..|.|.++. .+|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~-~~~~~------g~L~I~~~~~~~D~G~Y~   74 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDR-YSMVG------GNLVINNPDKYKDAGRYV   74 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCe-EEEEC------CEEEECcCCcCCCCEEEE
Confidence            34444444443333   457999999999999999999999887533221 11111      268898875 68999999


Q ss_pred             EEEEcCCCCee
Q psy670          284 CNVKNEFGESN  294 (540)
Q Consensus       284 C~~~~~~~~~~  294 (540)
                      |.|.|..|...
T Consensus        75 C~A~N~~G~~~   85 (93)
T cd05849          75 CIVSNIYGKVR   85 (93)
T ss_pred             EEEEeCcceEE
Confidence            99999998753

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.15  E-value=5.4e-10  Score=84.64  Aligned_cols=84  Identities=24%  Similarity=0.423  Sum_probs=59.8

Q ss_pred             cCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCC-----CCCCcEEEEEEE
Q psy670          212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP-----IGPDSGTYRCNV  286 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~  286 (540)
                      ..|....+.+|+.+.|.|.+.+.|.+.+.|+++|..+............. +    .+.|.++     +..|.|.|+|.|
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~----~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN-G----SLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC-C----eEEEeeeeccCCCCCcCEEEEEEE
Confidence            34556667789999999999999999999999999886544322221111 1    3444444     688999999999


Q ss_pred             EcC-CCCe-eeeEEEE
Q psy670          287 KNE-FGES-NANLNLN  300 (540)
Q Consensus       287 ~~~-~~~~-~~~~~l~  300 (540)
                      .|. .|.. +..+.|.
T Consensus        79 ~N~~~G~~~s~~~~l~   94 (95)
T cd05722          79 QNDSLGSIVSRTARLT   94 (95)
T ss_pred             ECCccCcEEEeeeEEe
Confidence            999 8875 4444443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.15  E-value=2.6e-10  Score=82.41  Aligned_cols=67  Identities=19%  Similarity=0.418  Sum_probs=53.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.+.|.|.+.|.|.| +|.|+|+|.++.....  .      .   .+.|.|..+  .|+|.|.|.|+|..|..
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~--~------~---~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA--P------S---PSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC--C------C---CCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            4578899999999999999999 7999999998854110  0      1   127888876  47899999999999865


Q ss_pred             E
Q psy670          190 N  190 (540)
Q Consensus       190 ~  190 (540)
                      .
T Consensus        74 ~   74 (81)
T cd05749          74 T   74 (81)
T ss_pred             E
Confidence            3

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.14  E-value=1.6e-10  Score=83.46  Aligned_cols=71  Identities=20%  Similarity=0.328  Sum_probs=51.7

Q ss_pred             ccceeeeC-cceeEEeecceeeeeecCeecccCC--ceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670            7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSD--RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS   83 (540)
Q Consensus         7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~   83 (540)
                      .++|.+.| .|.      +.+.|||+|+++....  +.++......    ..++|.|.+++.+|+|.|+|.+.|..|..+
T Consensus         2 ~L~C~a~~~~p~------~~~~W~~~g~~i~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~   71 (76)
T cd05895           2 VLRCETVSEYPS------LRFKWFKNGKEIGAKNKPDNKIKIRKKK----KSSELQISKASLADNGEYKCMVSSKLGNDS   71 (76)
T ss_pred             EEEEecccCCCC------CceEEEECCcccccCCCCCceEEEEeCC----cEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence            47898875 566      8999999999886432  1222211111    236899999999999999999999998877


Q ss_pred             eeEE
Q psy670           84 STVN   87 (540)
Q Consensus        84 ~~~~   87 (540)
                      .++.
T Consensus        72 ~~~~   75 (76)
T cd05895          72 VTAN   75 (76)
T ss_pred             EEEe
Confidence            6653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.14  E-value=9.7e-10  Score=81.11  Aligned_cols=88  Identities=17%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCc-eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...|.+|+.+.|.|.+.++|.+. +.|.+++..+.................+.+.|.+..++.+|+|.|+|.|.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45688999999999999999997 99999988775444423333333556788999999999999999999999999988


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      +..+.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.13  E-value=3e-10  Score=83.37  Aligned_cols=77  Identities=27%  Similarity=0.437  Sum_probs=55.6

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCE---ee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTK---VI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .+ ........ ..   .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRG-NV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccC-CE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            7889999999999999999999732   11 11000000 00   00012389999999999999999999999998888


Q ss_pred             EEEEE
Q psy670          193 IALNF  197 (540)
Q Consensus       193 ~~l~v  197 (540)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            87764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.13  E-value=9.6e-10  Score=81.66  Aligned_cols=82  Identities=26%  Similarity=0.524  Sum_probs=64.0

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.........   ........|.|.++..+|+|.|+|.+.|..|....+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY---KVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE---EccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            34567999999999999999999999999887654432211   111223379999999999999999999999988888


Q ss_pred             EEEEE
Q psy670          401 LTLNI  405 (540)
Q Consensus       401 ~~l~V  405 (540)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05729          81 YKVDV   85 (85)
T ss_pred             EEEeC
Confidence            77764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.12  E-value=3e-10  Score=81.63  Aligned_cols=66  Identities=21%  Similarity=0.461  Sum_probs=53.0

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      .+...|....+.+|++++|.|.+.+.|. ..+.|++++..+....              ..|.|.++ .+|+|.|+|.+.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~--------------~~l~i~~~-~~dsG~Y~C~a~   66 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT--------------NSYRIRAA-NNDSGEYRCQTQ   66 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC--------------CeEEEeec-ccCCEEeEEECC
Confidence            3445567778889999999999998775 4699999998773211              26889899 999999999998


Q ss_pred             cC
Q psy670          288 NE  289 (540)
Q Consensus       288 ~~  289 (540)
                      +.
T Consensus        67 ~~   68 (78)
T cd05752          67 GS   68 (78)
T ss_pred             CC
Confidence            75

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.12  E-value=3e-10  Score=82.69  Aligned_cols=72  Identities=25%  Similarity=0.413  Sum_probs=51.2

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCC------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEE
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQT------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANL  401 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~  401 (540)
                      ++|.|.+.|.|.|.+.|++++......      ...+.....+     .+|.|.++..+|+|.|+|.|.|..|.. ++++
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN-----GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC-----CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence            479999999999999999964322110      0111111111     279999999999999999999999876 5666


Q ss_pred             EEEE
Q psy670          402 TLNI  405 (540)
Q Consensus       402 ~l~V  405 (540)
                      .|.|
T Consensus        76 ~l~~   79 (79)
T cd05734          76 VLTV   79 (79)
T ss_pred             EEeC
Confidence            6553

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.11  E-value=2.4e-09  Score=79.08  Aligned_cols=88  Identities=15%  Similarity=0.240  Sum_probs=71.4

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..+.+.+|+++.|.|.++++|.|+ +.|.+++..+............ ....+.+.|.+.++..+|.|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            346788999999999999999997 9999998877554442222222 34467889999999999999999999999988


Q ss_pred             eEEEEEEEEE
Q psy670          397 LNANLTLNIE  406 (540)
Q Consensus       397 ~~~~~~l~V~  406 (540)
                      .+.++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.08  E-value=3.8e-10  Score=82.15  Aligned_cols=68  Identities=25%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecc--------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK--------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK   78 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~   78 (540)
                      -+.|.+.|.|.      |.+.|+|++....        ...++.+  ..+       ++|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~l~C~~~G~P~------P~v~W~~~~~~~~~~~~~~~~~~~r~~~--~~~-------~~L~I~~v~~~D~G~Y~C~a~N~   66 (79)
T cd05734           2 TLNCSAEGYPP------PTIVWKHSKGRGHPQHTHTCCLAGRIQL--LSN-------GSLLIKHVLEEDSGYYLCKVSND   66 (79)
T ss_pred             EeEeeCeEeCC------CEEEEEECCCccccccccccccCCCEEE--ecC-------CeEEECcCCcccCEEEEEEEEeC
Confidence            36899999999      9999999754221        1222222  122       48999999999999999999999


Q ss_pred             Ccce-eeeEEEE
Q psy670           79 NGEG-SSTVNLN   89 (540)
Q Consensus        79 ~~~~-~~~~~l~   89 (540)
                      .|.. +..+.|+
T Consensus        67 ~G~~~s~~~~l~   78 (79)
T cd05734          67 VGADASKSMVLT   78 (79)
T ss_pred             CCCCCceEEEEe
Confidence            9876 4455544

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.07  E-value=1.7e-09  Score=80.27  Aligned_cols=81  Identities=22%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+...........    ......|.|.++..+|+|.|.|.+.|..|.....
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKV----RKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEc----cCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            456899999999999999999999999988764433322111    1122479999999999999999999999888777


Q ss_pred             EEEEE
Q psy670          193 IALNF  197 (540)
Q Consensus       193 ~~l~v  197 (540)
                      +.|+|
T Consensus        81 ~~l~v   85 (85)
T cd05729          81 YKVDV   85 (85)
T ss_pred             EEEeC
Confidence            77654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.07  E-value=8.5e-10  Score=81.62  Aligned_cols=77  Identities=25%  Similarity=0.405  Sum_probs=61.5

Q ss_pred             CCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          317 KPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .|....+.+|+.++|.|.+.+ .|.+.+.|++++..+....      ...++    .|.|.+++.+|+|.|.|.|.|..|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~----~L~I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNG----ILTIRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCC----EEEECCCCHHHCEEEEEEEeccCC
Confidence            455667889999999999975 6888999999987654321      11122    799999999999999999999999


Q ss_pred             eeEEEEEE
Q psy670          396 ELNANLTL  403 (540)
Q Consensus       396 ~~~~~~~l  403 (540)
                      ....++.|
T Consensus        77 ~~~~~~~l   84 (85)
T cd05754          77 TDEATATL   84 (85)
T ss_pred             eEeEEEEE
Confidence            98887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.06  E-value=1.3e-09  Score=79.40  Aligned_cols=66  Identities=20%  Similarity=0.393  Sum_probs=52.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ...+..|+++.|.|.+. .+.+++.|+++|.++..+. +..+..         ..|.|.+++.+|+|.|+|.+....
T Consensus         5 ~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~~---------~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           5 QRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLYR---------DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             eEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEEC---------CcEEEeCCCHHHCEEEEEEEEecc
Confidence            35678999999999984 4678999999999987653 332221         169999999999999999998763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.05  E-value=3.9e-09  Score=78.80  Aligned_cols=92  Identities=17%  Similarity=0.358  Sum_probs=70.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeecc--CceEEEEecCCCeEEEEEEEeCCCCCC-cEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKES--SKIKIIVNEQDDTYEIICEITDPIGPD-SGTY  282 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y  282 (540)
                      +|.+ .......+.+|+.+.|.|.+.+.|.| .|.|..++..+...  .++.+..........++|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4444 44556677799999999999887776 58999888776553  455555444555667799999998766 7999


Q ss_pred             EEEEEcCCCCeeeeEEE
Q psy670          283 RCNVKNEFGESNANLNL  299 (540)
Q Consensus       283 ~C~~~~~~~~~~~~~~l  299 (540)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998776654

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.05  E-value=1.9e-09  Score=80.55  Aligned_cols=82  Identities=26%  Similarity=0.475  Sum_probs=60.9

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-  394 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-  394 (540)
                      +....+.+|+.+.|.|.+.+ |.+.+.|++++..+.....  .....  ...    .|.|.+++.+|+|.|+|.|.+.. 
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~--~~~----~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV--TED----GLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE--cCC----CEEEccCCHHHCEEEEEEEecCcc
Confidence            34556788999999999977 8889999999987765431  12211  222    58999999999999999998765 


Q ss_pred             eeeEEEEEEEEE
Q psy670          395 GELNANLTLNIE  406 (540)
Q Consensus       395 g~~~~~~~l~V~  406 (540)
                      +....+..|.|.
T Consensus        76 ~~~~~~~~l~V~   87 (89)
T cd04979          76 KQTLATYSLNVL   87 (89)
T ss_pred             ceeEeEEEEEEe
Confidence            445666777665

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.04  E-value=3.9e-09  Score=76.91  Aligned_cols=69  Identities=22%  Similarity=0.452  Sum_probs=55.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      |....+..|+++.|.|.+.+ +.+.+.|+++|.++..+.. +... .++     .|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~-r~~~-~~~-----~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA-KYLL-YRD-----GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc-eEEE-ECC-----cEEEeCCCHHHCEEEEEEEEecc
Confidence            45677889999999999854 6789999999999976532 2222 222     69999999999999999998874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.03  E-value=3e-09  Score=79.79  Aligned_cols=80  Identities=19%  Similarity=0.387  Sum_probs=56.9

Q ss_pred             eeccCCceeecC---CCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEEE
Q psy670          209 SFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYRC  284 (540)
Q Consensus       209 ~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C  284 (540)
                      .|...|....+.   .|+.+.|.|.+.+.|.+.++|++++..+............      ..|.|.++. .+|+|.|+|
T Consensus         3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~C   76 (91)
T cd04967           3 VFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG------GNLVISNPSKAKDAGRYQC   76 (91)
T ss_pred             eeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC------CEEEEecCCccCCCEEEEE
Confidence            444455554433   3467999999999999999999999887433222222211      267888876 489999999


Q ss_pred             EEEcCCCCee
Q psy670          285 NVKNEFGESN  294 (540)
Q Consensus       285 ~~~~~~~~~~  294 (540)
                      .|.|..|...
T Consensus        77 ~a~N~~G~~~   86 (91)
T cd04967          77 LASNIVGTVL   86 (91)
T ss_pred             EEEcCCCEEE
Confidence            9999988643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.03  E-value=1e-09  Score=81.51  Aligned_cols=77  Identities=23%  Similarity=0.362  Sum_probs=58.1

Q ss_pred             CccccCCCeEEEEEEEee-----cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEA-----SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ...+.+|+++.|.|...+     +|.+.+.|+|++.++........ .        ...|.|.++..+|+|.|+|.+.+.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~--------~~~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-K--------GSKLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-c--------CCEEEEeeCChhhCEEEEEEEEec
Confidence            356789999999998743     25779999999999875543221 1        128999999999999999999998


Q ss_pred             CceeEEEEEEE
Q psy670          186 IGESNANIALN  196 (540)
Q Consensus       186 ~~~~~~~~~l~  196 (540)
                      .+.....++..
T Consensus        75 ~~~~~~~~t~t   85 (92)
T cd05757          75 HNGKQYNVTRT   85 (92)
T ss_pred             CCCEEEEEEEE
Confidence            77654444433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.03  E-value=4.6e-09  Score=78.62  Aligned_cols=82  Identities=18%  Similarity=0.319  Sum_probs=57.8

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEcc--------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ--------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .+..+.+|+++.|.|.+.+.|.+.|.|++++..+.        .+.++...  .. .....+|.|.++..+|+|.|+|.+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~--~~-~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV--KS-TPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE--eC-CCceEEEEECCCCcccCEEEEEEE
Confidence            45678899999999999999999999998875431        12222211  11 112348999999999999999999


Q ss_pred             EcCCeeeEEEEEEE
Q psy670          391 KNFHGELNANLTLN  404 (540)
Q Consensus       391 ~n~~g~~~~~~~l~  404 (540)
                      .. .-...+..+|.
T Consensus        82 ~t-~~~~~~~~~~~   94 (95)
T cd05882          82 FT-MPVRTAKATVT   94 (95)
T ss_pred             Ee-eccccEEEEEE
Confidence            87 33444455544

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.02  E-value=3.2e-09  Score=79.86  Aligned_cols=84  Identities=14%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--------EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--------ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +....+.+|+++.|.|.+.+.|.+.+.|++.+.        ....+.++..  ... .....+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~--~~~-~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL--VRA-SWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEE--EEC-CCCcEEEEECcCCcccCEEEEEE
Confidence            345778899999999999999999999986322        1222333322  111 11233899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNI  405 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V  405 (540)
                      +.+.. ....+..|.|
T Consensus        81 ~~t~~-~~~~~~~l~v   95 (95)
T cd07701          81 LFTMP-VKTSKAYLTV   95 (95)
T ss_pred             eEeec-CccEEEEEEC
Confidence            98843 3355555553

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.01  E-value=2.8e-09  Score=79.27  Aligned_cols=78  Identities=23%  Similarity=0.383  Sum_probs=59.8

Q ss_pred             EEeeCCCeEEEEEEEEc-----cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          321 RSEQGGKLVVMECKVKA-----KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~-----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..+.+|....|.|...+     +|.|.+.|++++.++........    .+.    .|.|.++..+|+|.|+|.|.|..+
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~----~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGS----KLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCC----EEEEeeCChhhCEEEEEEEEecCC
Confidence            45678999999998753     25779999999999876543221    222    899999999999999999999988


Q ss_pred             eeEEEEEEEEE
Q psy670          396 ELNANLTLNIE  406 (540)
Q Consensus       396 ~~~~~~~l~V~  406 (540)
                      ....+++..+.
T Consensus        77 ~~~~~~t~t~~   87 (92)
T cd05757          77 GKQYNVTRTIS   87 (92)
T ss_pred             CEEEEEEEEEE
Confidence            76655555443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.01  E-value=1.7e-09  Score=80.82  Aligned_cols=80  Identities=16%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCc--eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc-
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR--IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG-  187 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-  187 (540)
                      ...+.+|+++.|.|.+.+ |.+.+.|++++..+.....  .+....   .    ..|.|.+++.+|+|.|+|.+.+..+ 
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~---~----~~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT---E----DGLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc---C----CCEEEccCCHHHCEEEEEEEecCccc
Confidence            346778999999999966 7789999999887654321  111111   1    1699999999999999999987653 


Q ss_pred             eeEEEEEEEEe
Q psy670          188 ESNANIALNFQ  198 (540)
Q Consensus       188 ~~~~~~~l~v~  198 (540)
                      .....+.|.|.
T Consensus        77 ~~~~~~~l~V~   87 (89)
T cd04979          77 QTLATYSLNVL   87 (89)
T ss_pred             eeEeEEEEEEe
Confidence            45667777765

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.00  E-value=5.7e-09  Score=78.12  Aligned_cols=71  Identities=18%  Similarity=0.360  Sum_probs=53.1

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEee-c-------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI-E-------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN  181 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  181 (540)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+ .       ...++.+..    ......+|.|.+++.+|+|.|+|.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEEE
Confidence            4567889999999999999999999999977543 1       122222211    111234899999999999999999


Q ss_pred             EEc
Q psy670          182 ACN  184 (540)
Q Consensus       182 ~~~  184 (540)
                      +..
T Consensus        81 ~~t   83 (95)
T cd05882          81 IFT   83 (95)
T ss_pred             EEe
Confidence            986

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.00  E-value=3.6e-09  Score=79.57  Aligned_cols=82  Identities=15%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEe--------ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV--------IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN  181 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  181 (540)
                      ....+.+|+++.|.|.+.+.|.+.+.|++.+..        .....++.....    .....+|.|.+++.+|+|.|+|.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEEE
Confidence            346788999999999999999999999874321        122334433211    11234899999999999999999


Q ss_pred             EEcCCceeEEEEEEE
Q psy670          182 ACNSIGESNANIALN  196 (540)
Q Consensus       182 ~~~~~~~~~~~~~l~  196 (540)
                      +.+.... .....|.
T Consensus        81 ~~t~~~~-~~~~~l~   94 (95)
T cd07701          81 LFTMPVK-TSKAYLT   94 (95)
T ss_pred             eEeecCc-cEEEEEE
Confidence            9874332 4444443

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.99  E-value=2.1e-09  Score=79.50  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=57.9

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.++|.|.+.+ .|.+.+.|++++..+....  .      ..   ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~------~~---~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--M------DF---NGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--c------cc---CCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            456789999999999964 6888999999886653211  0      01   1279999999999999999999999887


Q ss_pred             EEEEEE
Q psy670          190 NANIAL  195 (540)
Q Consensus       190 ~~~~~l  195 (540)
                      ...+.|
T Consensus        79 ~~~~~l   84 (85)
T cd05754          79 EATATL   84 (85)
T ss_pred             eEEEEE
Confidence            776654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.96  E-value=2.9e-09  Score=77.84  Aligned_cols=72  Identities=18%  Similarity=0.373  Sum_probs=54.7

Q ss_pred             EEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-E
Q psy670          321 RSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-N  398 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  398 (540)
                      ..+.+|+.++|.|.+.+ .+...+.|+++|..+....        .    ...|.|.+++.+|+|.|+|.+.+..|.. +
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------~----~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------S----NSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------C----CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            35788999999999854 5667899999998664211        1    1279999999999999999999998743 3


Q ss_pred             EEEEEE
Q psy670          399 ANLTLN  404 (540)
Q Consensus       399 ~~~~l~  404 (540)
                      ..+.|.
T Consensus        77 ~~~~i~   82 (83)
T cd05753          77 EPVSIT   82 (83)
T ss_pred             CCEEEE
Confidence            444443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.94  E-value=9.7e-09  Score=75.19  Aligned_cols=71  Identities=24%  Similarity=0.601  Sum_probs=56.0

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-eeEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-ELNA  399 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~  399 (540)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.....              .+.+..++.+|+|.|+|.+.+..+ ..+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~   74 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------------GLFIPNVSPEDSGNYTCRASNGSGSNTST   74 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------------EEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------------eeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence            4578899999999999998999999999877753222              266688889999999999999664 3455


Q ss_pred             EEEEEE
Q psy670          400 NLTLNI  405 (540)
Q Consensus       400 ~~~l~V  405 (540)
                      ++.|.|
T Consensus        75 ~~~v~V   80 (80)
T PF13895_consen   75 SVNVTV   80 (80)
T ss_dssp             EEEEEE
T ss_pred             eEEeeC
Confidence            555554

...

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.94  E-value=7.5e-09  Score=76.22  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEEccC--CCeEEEEECCEEccCCC---ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          326 GKLVVMECKVKAKP--MPEIVWFHEGKELQQTD---RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       326 g~~v~l~C~~~~~p--~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      |+++.|.|.+.+.+  ...+.|.+.+.......   ..... ........++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS-LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc-ccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            78899999998765  45789988776442211   00000 01112345699999999999999999999999988888


Q ss_pred             EEEEEE
Q psy670          401 LTLNIE  406 (540)
Q Consensus       401 ~~l~V~  406 (540)
                      ..|.|.
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            888775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.93  E-value=9.3e-09  Score=75.73  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             CCeEEEEEEEeecCC--CceEEEeCCEeecCCCceEE-EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE
Q psy670          117 GDLLVMECVLEASPM--PDIIWYQGTKVIEDTGRIKM-SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI  193 (540)
Q Consensus       117 G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (540)
                      |+++.|.|.+.+.+.  ..+.|.+.++.......... ...........+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            789999999977654  47899887764321110000 000011233456999999999999999999999888887777


Q ss_pred             EEEEe
Q psy670          194 ALNFQ  198 (540)
Q Consensus       194 ~l~v~  198 (540)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.92  E-value=3.3e-09  Score=77.51  Aligned_cols=72  Identities=19%  Similarity=0.352  Sum_probs=54.7

Q ss_pred             ccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670          112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-  189 (540)
                      ..+.+|+.++|.|.+. +.+...+.|+|+|..+....             ....|.|.+++.+|+|.|+|.+.+..+.. 
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            3588999999999984 35566899999997664211             01279999999999999999999988753 


Q ss_pred             EEEEEEE
Q psy670          190 NANIALN  196 (540)
Q Consensus       190 ~~~~~l~  196 (540)
                      +..+.|+
T Consensus        76 s~~~~i~   82 (83)
T cd05753          76 SEPVSIT   82 (83)
T ss_pred             CCCEEEE
Confidence            4444444

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA03376 BARF1; Provisional

Probab=98.91  E-value=6.4e-08  Score=78.28  Aligned_cols=125  Identities=15%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             CccccCCCeEEEEEEEeec---CCCceEEEeCC----Ee-ec------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEAS---PMPDIIWYQGT----KV-IE------------DTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~~----~~-~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ++.+..|+.+.|+|.....   +.-.|.|+|.+    .. +.            ...+..+.     .+..+.+|.|.++
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~-----~~~gnvsLvI~~l   94 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH-----RSANTFFLVVTAA   94 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEE-----ecCCeEEEEEEee
Confidence            5677899999999987422   33479999942    11 11            11111111     1124568999999


Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE
Q psy670          171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL  247 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~  247 (540)
                      +.+|.|.|+|.+..........-.|.+..       +..+...........-+..++.|.+.++|.|.++|..+...
T Consensus        95 ~lSDdGtY~C~fQkge~~~~k~ehLt~V~-------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~  164 (221)
T PHA03376         95 NISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  164 (221)
T ss_pred             eecCCceEEEEEEcCCCceeeeeeeeeee-------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence            99999999999987554332222222211       00111101000111245678999988899999999876543

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.91  E-value=3.5e-09  Score=78.32  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             CCCccccCCCeEEEEEEE-eecCCCceEEEeCCEee--cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          109 KKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ..+..+.+|+.+.|.|.. .|.|.+.+.|++++..+  ..+.+..+..    .+   ..|.|.+++.+|+|.|+|.|.|.
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~----~~---G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ----TN---GNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC----CC---CcEEEeecCHhhCceeEEEEEec
Confidence            345678899999999988 78899999999998754  2233322221    11   18999999999999999999986


Q ss_pred             Cc
Q psy670          186 IG  187 (540)
Q Consensus       186 ~~  187 (540)
                      ..
T Consensus        83 ~~   84 (96)
T cd05727          83 SS   84 (96)
T ss_pred             cc
Confidence            53

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.89  E-value=5.6e-09  Score=76.46  Aligned_cols=72  Identities=28%  Similarity=0.659  Sum_probs=56.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc-ee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG-ES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~  189 (540)
                      +..+.+|+.+.|.|.+.+.|...+.|++++..+.....               .|.|.++..+|+|.|+|.+.+..+ ..
T Consensus         8 ~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    8 PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            35678999999999999888899999999877752211               267788899999999999998654 34


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      +..+.|.|
T Consensus        73 s~~~~v~V   80 (80)
T PF13895_consen   73 STSVNVTV   80 (80)
T ss_dssp             EEEEEEEE
T ss_pred             eeeEEeeC
Confidence            56666654

...

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.87  E-value=7.1e-09  Score=77.00  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecC--------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED--------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++|+|.|.+.+.+.+.+.|+++++....              .+++.....  ......++|+|.+++.+|+|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~--~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN--LWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc--cCCCCeEEEEECCCCHHHCEE
Confidence            3567899999999998888899999976633211              112222211  112334589999999999999


Q ss_pred             EEEEEEcCCce
Q psy670          178 YRCNACNSIGE  188 (540)
Q Consensus       178 Y~C~~~~~~~~  188 (540)
                      |.|.+.+..++
T Consensus        80 Y~C~v~~~~~~   90 (94)
T cd07690          80 YICEVEDKKEE   90 (94)
T ss_pred             EEEEECCccce
Confidence            99999886553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.86  E-value=1.7e-08  Score=71.78  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=49.9

Q ss_pred             EEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          120 LVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       120 v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      +.|+|.. .++|+++|.|||+++++......   ..........++|.|.....+|++.|+|+|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~---~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ---QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc---ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            7899999 56899999999999999653211   111111234457999999999999999999998765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.84  E-value=1.5e-08  Score=70.15  Aligned_cols=63  Identities=30%  Similarity=0.612  Sum_probs=49.3

Q ss_pred             CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      +|+++.|.|.+.+.+.+.+.|++++..+..  ......       ....|.|.++..+|+|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            588999999988888899999999887762  111111       112899999999999999999988653

>smart00410 IG_like Immunoglobulin like

Probab=98.83  E-value=1e-07  Score=70.59  Aligned_cols=82  Identities=29%  Similarity=0.607  Sum_probs=64.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+.....  ...  ..+|.|.+++.+|+|.|.|.+.+..+...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR--SGS--NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE--cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            34567899999999999888889999998 88776444444322  221  44899999999999999999998888776


Q ss_pred             EEEEEEE
Q psy670          399 ANLTLNI  405 (540)
Q Consensus       399 ~~~~l~V  405 (540)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            6666655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.83  E-value=1e-07  Score=70.59  Aligned_cols=82  Identities=29%  Similarity=0.607  Sum_probs=64.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+.....  ...  ..+|.|.+++.+|+|.|.|.+.+..+...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~--~~~--~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR--SGS--NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE--cCC--eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            34567899999999999888889999998 88776444444322  221  44899999999999999999998888776


Q ss_pred             EEEEEEE
Q psy670          399 ANLTLNI  405 (540)
Q Consensus       399 ~~~~l~V  405 (540)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            6666655

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.83  E-value=1.9e-08  Score=71.58  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=49.0

Q ss_pred             cceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670            8 KSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         8 ~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   82 (540)
                      ++|... |+|+      ++|.||||+++|.....    ....+......++|+|...+.+|.+.|+|+|.|..+..
T Consensus         4 L~C~s~~skP~------a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           4 LTCLSPRSKPA------ATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEeCCCccCC------CeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            679877 7887      99999999999964321    11122123345689999999999999999999987653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PHA03376 BARF1; Provisional

Probab=98.83  E-value=1.8e-07  Score=75.76  Aligned_cols=128  Identities=17%  Similarity=0.295  Sum_probs=74.0

Q ss_pred             eeecCCCCeEEEEEEecc---cCCCeEEEEeC----CEEee-cc-C-------ceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670          216 IIPNESGTLIQMKCKCSA---KPRPEVKWFKA----DKLVK-ES-S-------KIKIIVNEQDDTYEIICEITDPIGPDS  279 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~---~p~~~v~W~~~----~~~l~-~~-~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~  279 (540)
                      .+....|+.+.|.|...-   .+...|.|+|.    ...+. .. .       .++.....-......+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            345567999999998852   34557999994    22211 10 0       111001000111345899999999999


Q ss_pred             EEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE
Q psy670          280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK  350 (540)
Q Consensus       280 g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~  350 (540)
                      |.|+|.+..........-.+.+..       |..+...........-....+.|.+.|+|.|.+.|..+..
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~-------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeee-------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            999999987544333222232221       1111111111112225567899998889999999987644

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.82  E-value=2.4e-08  Score=69.07  Aligned_cols=63  Identities=32%  Similarity=0.681  Sum_probs=49.8

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +|+.++|.|.+.+.|.+.+.|++++..+..  ...  .....    ..|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASG----STLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCC----cEEEEeeCCcccCEEEEEEEecCCC
Confidence            478999999988889999999999988762  111  11112    2799999999999999999998754

>smart00409 IG Immunoglobulin

Probab=98.81  E-value=1.1e-07  Score=70.55  Aligned_cols=81  Identities=30%  Similarity=0.655  Sum_probs=62.9

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+........     ...|.|.+++..|+|.|.|.+.+..+...
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            4567899999999998877889999998 77776455554433211     45899999999999999999998777765


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            5566654

>smart00410 IG_like Immunoglobulin like

Probab=98.81  E-value=1.1e-07  Score=70.55  Aligned_cols=81  Identities=30%  Similarity=0.655  Sum_probs=62.9

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+..|+++.|.|.+.+.+.+.+.|+++ +..+....+........     ...|.|.+++..|+|.|.|.+.+..+...
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            4567899999999998877889999998 77776455554433211     45899999999999999999998777765


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            5566654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.81  E-value=5.1e-08  Score=72.49  Aligned_cols=79  Identities=15%  Similarity=0.285  Sum_probs=54.7

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCE--EccCC--CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc-CCe
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQQT--DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN-FHG  395 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~g  395 (540)
                      +...+|+.+.|.|.. +.|.+.+.|++.+.  .....  ...+...  .+    ..|.|.+++.+|+|.|+|.|.+ ..+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE----RGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec----CeEEEeeCChhHCEEEEEEEEccCCe
Confidence            456789999999996 57889999998432  21110  1111111  11    1699999999999999999984 566


Q ss_pred             eeEEEEEEEEE
Q psy670          396 ELNANLTLNIE  406 (540)
Q Consensus       396 ~~~~~~~l~V~  406 (540)
                      .....++|.|.
T Consensus        79 ~~~~~~~l~v~   89 (91)
T cd05871          79 QTLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEEe
Confidence            66667777764

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.80  E-value=2.5e-08  Score=73.90  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=55.9

Q ss_pred             ccccCCCeEEEEEEEe------e-----cCCCceEEEeCCEeecCCCc-----eEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          112 TIHQDGDLLVMECVLE------A-----SPMPDIIWYQGTKVIEDTGR-----IKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~------~-----~p~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      ..+.+|+++.|.|...      +     .....+.|+|++..+.....     .++....       ..|.|.++..+|+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~-------~~Lwf~Pa~~eDS   82 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE-------DSIWFRPAELQDS   82 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC-------CEEEEEeCChhhC
Confidence            4577999999999861      1     12337999999755543321     1222111       1899999999999


Q ss_pred             eEEEEEEEcCCceeEEEEEEEE
Q psy670          176 GNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      |.|+|.+.|........+.|+|
T Consensus        83 G~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          83 GLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             eEEEEEECCCCcceEEEEEEEC
Confidence            9999999998877776666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.79  E-value=4.5e-08  Score=72.81  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=54.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCE--eec----CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE-c
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTK--VIE----DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC-N  184 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~  184 (540)
                      +...+|+++.|.|.. +.|.+.+.||+.+.  ...    ...+....         ...|.|.++..+|+|.|+|.+. +
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~---------~~~L~I~~~~~~DsG~Y~C~a~~~   75 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT---------ERGLLLRSLQRSDAGVYTCTAVEH   75 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe---------cCeEEEeeCChhHCEEEEEEEEcc
Confidence            346789999999997 57888999998432  211    11222211         1269999999999999999998 4


Q ss_pred             CCceeEEEEEEEEe
Q psy670          185 SIGESNANIALNFQ  198 (540)
Q Consensus       185 ~~~~~~~~~~l~v~  198 (540)
                      ..+.....++|.|.
T Consensus        76 ~~~~~~~~~~l~v~   89 (91)
T cd05871          76 SFSQTLAKYTLHVI   89 (91)
T ss_pred             CCeEEEEEEEEEEe
Confidence            55556667777765

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.79  E-value=5.9e-08  Score=71.11  Aligned_cols=75  Identities=20%  Similarity=0.430  Sum_probs=51.1

Q ss_pred             EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEE
Q psy670          120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIAL  195 (540)
Q Consensus       120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l  195 (540)
                      +.|.|.+.| .|.+.+.|+++|+.+..... ....... ......+.|.|.....+|.|.|+|.+.|.....  ..+++|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            689999976 68889999999998854321 1111111 112334578899888889999999999876443  344444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.77  E-value=1.4e-08  Score=70.48  Aligned_cols=63  Identities=22%  Similarity=0.491  Sum_probs=46.0

Q ss_pred             CCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          117 GDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       117 G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      |++++|.|.+ .+.+...+.|++++..............   .......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTN---SVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEET---TTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecc---cceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 6677889999999876644332222211   1211225999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.77  E-value=7.5e-08  Score=72.87  Aligned_cols=81  Identities=16%  Similarity=0.310  Sum_probs=54.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEee--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      ...+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++....    .......|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEEEE
Confidence            456889999999999988788899998633211        0112333211    1112347999999999999999999


Q ss_pred             EcCCceeEEEEEEE
Q psy670          183 CNSIGESNANIALN  196 (540)
Q Consensus       183 ~~~~~~~~~~~~l~  196 (540)
                      ..... ....+.|.
T Consensus        82 ~~~~~-~~~~~~~~   94 (95)
T cd05717          82 YTMPV-QTAKATVT   94 (95)
T ss_pred             ecCCC-ceEEEEEE
Confidence            87643 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>TIGR00864 PCC polycystin cation channel protein

Probab=98.76  E-value=0.00013  Score=83.16  Aligned_cols=343  Identities=13%  Similarity=0.082  Sum_probs=199.4

Q ss_pred             cccCCCeeEEEE--EEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCC
Q psy670           63 VQKSDSGEYKVI--AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGT  140 (540)
Q Consensus        63 ~~~~D~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~  140 (540)
                      +...+.|.|...  +.|..|..+.+..+.|..+-..+.+.        .....+..|+++.|.-...+.+...+.|..++
T Consensus      1664 vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~--------aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864      1664 LNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQ--------ASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred             EecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEe--------ccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence            345788988886  45777887777777776544333322        22334567999999987777788899998765


Q ss_pred             Eeec-CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE--EEcCCceeEEEEEEEEecCcCCCCCCCeeccCC--c
Q psy670          141 KVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKP--R  215 (540)
Q Consensus       141 ~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~  215 (540)
                      ..-. .......+                  +....|.|.-.  +.|..+.....+.+.|......    ..|....  .
T Consensus      1736 G~s~~~s~p~~tH------------------tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~G----L~i~~~~~~~ 1793 (2740)
T TIGR00864      1736 GDDLETSEPFMSH------------------SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISG----LKIRAADAGE 1793 (2740)
T ss_pred             CCCcccCCCceEE------------------EccCCceEEEEEEEEccccccceeEEEEEEecccc----ceEecCCCCc
Confidence            3211 11110011                  13457788665  4577777666777777753321    1221111  1


Q ss_pred             eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE--EEEcCCCCe
Q psy670          216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC--NVKNEFGES  293 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C--~~~~~~~~~  293 (540)
                      ...+..|..+.+.=.+.........|..++..-......             .     .+..+.|.|+-  .|.|..+..
T Consensus      1794 ~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v-------------~-----~Tf~~aG~ytV~L~AsN~vs~~ 1855 (2740)
T TIGR00864      1794 QNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHA-------------C-----MTFPDAGTFAIRLNASNAVSGK 1855 (2740)
T ss_pred             ccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccccee-------------E-----EecCCCeEEEEEEEEEcccCcc
Confidence            112345667777665543344567787765431111110             1     23347888876  566888877


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE-EccCCCceEEEEEecCCeeEEE
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK-ELQQTDRISWNVTLKGDKYHIR  372 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~  372 (540)
                      ..+..+.|+...      -.+........+..|+.++|.+.+...+...+.|..++. .......         .    +
T Consensus      1856 ~~s~~~~VQe~I------~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~---------~----t 1916 (2740)
T TIGR00864      1856 SASREFFAEEPI------FGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPG---------P----R 1916 (2740)
T ss_pred             eeeeeEEEEEec------ceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCC---------C----e
Confidence            777788887632      122222333456789999999998877788889987643 2211011         0    1


Q ss_pred             EEEcCCCCCCCeeEE--EEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670          373 LEVKDPRKEDTGLYK--CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT  450 (540)
Q Consensus       373 L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (540)
                      +. +  +....|.|.  -.|.|..+.......+.|..                                           
T Consensus      1917 ~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle------------------------------------------- 1950 (2740)
T TIGR00864      1917 FS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLE------------------------------------------- 1950 (2740)
T ss_pred             EE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEE-------------------------------------------
Confidence            11 1  112345554  56788888877777766654                                           


Q ss_pred             eeeec-eeecCCc-EEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-----eEEEEEEecCCeEEEEEEeeee
Q psy670          451 LSVVP-VIREVPK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN-----KHVVHIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       451 ~~~~p-~i~~~~~-~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~-----~~~~~~~~~~~g~y~c~~~~~~  521 (540)
                         +- -+..... ...+..|+..+|.-.++..-+..+.|+.+-..+..+.     ...+.......|.|+..+...|
T Consensus      1951 ---~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N 2025 (2740)
T TIGR00864      1951 ---AVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFN 2025 (2740)
T ss_pred             ---eccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEc
Confidence               10 1111111 1125679999999999877677899997644333332     1234455567899998887544

Note: this model has been restricted to the amino half because for technical reasons.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.75  E-value=1.2e-07  Score=71.82  Aligned_cols=83  Identities=16%  Similarity=0.358  Sum_probs=56.0

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEc--------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ....+.+|++++|.|.+.+.+.+.+.|++.+..+        ....++... ...  .....|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~-~~~--~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV-NFS--ANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE-cCC--CCeeEEEEccCCcccCEEEEEEE
Confidence            4566889999999999988888899998632211        111222221 111  12347999999999999999999


Q ss_pred             EcCCeeeEEEEEEEE
Q psy670          391 KNFHGELNANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V  405 (540)
                      .+... ...++.|.|
T Consensus        82 ~~~~~-~~~~~~~~v   95 (95)
T cd05717          82 YTMPV-QTAKATVTV   95 (95)
T ss_pred             ecCCC-ceEEEEEEC
Confidence            87653 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.75  E-value=7.1e-08  Score=71.67  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             EeeCCCeEEEEEEEEccCCCeEEEEECCEEccC--------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ--------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      .+.+|+.++|.|.+.+.+.+.+.|++++.....              ..++..... ........|+|.+++.+|+|.|.
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEEE
Confidence            467899999999999999999999977633211              111111110 00112347999999999999999


Q ss_pred             EEEEcCCeee
Q psy670          388 CNIKNFHGEL  397 (540)
Q Consensus       388 C~a~n~~g~~  397 (540)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.74  E-value=6.8e-08  Score=70.77  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=49.9

Q ss_pred             ccceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce
Q psy670            7 LKSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         7 ~~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   82 (540)
                      -++|.+.| +|.      +.++|+|+|+++... ........++......+.|.|...+.+|.|.|+|+|.|.....
T Consensus         3 ~L~C~v~g~~P~------~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           3 NLTCRARGAKPA------AEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEEEeCccCC------CEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            37899987 576      899999999988643 2222222333233345789999988999999999999876443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.74  E-value=2.4e-08  Score=69.36  Aligned_cols=63  Identities=24%  Similarity=0.530  Sum_probs=47.0

Q ss_pred             CCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          326 GKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       326 g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      |++++|.|.+ .+.+...+.|++++..+........  ...+......|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNR--STNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEE--EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEe--ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 6778889999999886654433221  1222222224999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.74  E-value=4e-08  Score=72.80  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             CccccCCCeEEEEEEE-ee----cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVL-EA----SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      +..+.+|.+..|.|.- .+    .+.+.+.|||++.++......... .  ...   ..|.|.++..+|+|.|+|.+.+.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~--~~~---~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-L--KGS---TYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-c--CCC---CEEEEEEcChhhCEEEEEEEEEe
Confidence            3567789999999974 33    366689999999988644322111 0  011   16999999999999999999987


Q ss_pred             Cce
Q psy670          186 IGE  188 (540)
Q Consensus       186 ~~~  188 (540)
                      .+.
T Consensus        78 ~~g   80 (95)
T cd05897          78 HEG   80 (95)
T ss_pred             eCC
Confidence            654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.74  E-value=3.3e-08  Score=73.17  Aligned_cols=72  Identities=18%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             eEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEcc--CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          320 IRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQ--QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++.++.  .+.+.. ....+|     .|.|.+++.+|+|.|+|.|+|....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-VSQTNG-----NLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-EeCCCC-----cEEEeecCHhhCceeEEEEEecccC
Confidence            4567889999999975 478999999999987642  223221 111223     7999999999999999999997644


Q ss_pred             e
Q psy670          397 L  397 (540)
Q Consensus       397 ~  397 (540)
                      .
T Consensus        86 ~   86 (96)
T cd05727          86 K   86 (96)
T ss_pred             C
Confidence            3

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.73  E-value=5.8e-08  Score=71.96  Aligned_cols=71  Identities=15%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             EeeCCCeEEEEEEE-E----ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          322 SEQGGKLVVMECKV-K----AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       322 ~~~~g~~v~l~C~~-~----~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+..|.+..|.|.- .    ..+.++++|+||+.++....... ....+..    .|.|.+++.+|+|.|+|.|.+.+|.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~~~~~----~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSLKGST----YLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-EecCCCC----EEEEEEcChhhCEEEEEEEEEeeCC
Confidence            45678899999972 2    23567999999999987544321 1111222    6999999999999999999998765


Q ss_pred             e
Q psy670          397 L  397 (540)
Q Consensus       397 ~  397 (540)
                      .
T Consensus        81 ~   81 (95)
T cd05897          81 K   81 (95)
T ss_pred             E
Confidence            4

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.69  E-value=3.1e-08  Score=73.12  Aligned_cols=69  Identities=23%  Similarity=0.422  Sum_probs=54.4

Q ss_pred             CCccccCCCeEEEEEEE-eecCCCceEEEeCCEe-ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy670          110 KPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNACNSI  186 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~  186 (540)
                      ..+.+.+|+.+.|.|.. .|.|.+.|.|++++.. +..+.+..+...        ..|.|.+++.+|.| .|.|.|.+..
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~--------GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN--------GNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC--------ceEEEEEEehhhCCCCeEEEEEccc
Confidence            45678999999999974 8999999999987644 344444443321        28999999999999 8999999865

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>TIGR00864 PCC polycystin cation channel protein

Probab=98.68  E-value=0.0011  Score=76.15  Aligned_cols=352  Identities=13%  Similarity=0.088  Sum_probs=200.0

Q ss_pred             cCCCeeEEEEE--EccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEe
Q psy670           65 KSDSGEYKVIA--KNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV  142 (540)
Q Consensus        65 ~~D~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~  142 (540)
                      ....|.|...+  .|..|....++.|.|..+-.-+.+....+    .....+..|..+.|.-.+.......+.|..++..
T Consensus      1750 f~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~----~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~ 1825 (2740)
T TIGR00864      1750 FPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADA----GEQNFFAADSSVCFQGELATGTNVSWCWAIDGGS 1825 (2740)
T ss_pred             ccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCC----CcccceecCcEEEEEEEccCCCeeEEEEEeCCCC
Confidence            55678898864  57777777777777776543444432211    1112455678888877764344447888776432


Q ss_pred             ecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE--EEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecC
Q psy670          143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE  220 (540)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~  220 (540)
                      -..+...              .     .+..+.|.|+-.  +.|..+.......+.|++...      .+........+.
T Consensus      1826 s~~gk~v--------------~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~------~L~L~as~~~~~ 1880 (2740)
T TIGR00864      1826 SKMGKHA--------------C-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF------GLELKASKKIAA 1880 (2740)
T ss_pred             cccccee--------------E-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc------eEEEeccccccc
Confidence            1111100              1     235678999776  457777666666677765211      222233344566


Q ss_pred             CCCeEEEEEEecccCCCeEEEEeCCEE-eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE--EEEEcCCCCeeeeE
Q psy670          221 SGTLIQMKCKCSAKPRPEVKWFKADKL-VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR--CNVKNEFGESNANL  297 (540)
Q Consensus       221 ~g~~~~l~C~~~~~p~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~  297 (540)
                      .|+.++|.+.....+...+.|...+.. ........+           .   +.  ....|.|.  -.+.|..+.....+
T Consensus      1881 ~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~-----------~---Hs--Y~~~G~Y~VtV~A~N~Vs~~~a~~ 1944 (2740)
T TIGR00864      1881 IGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRF-----------S---HS--FPRVDDHMVNLRAKNEVSCAQANL 1944 (2740)
T ss_pred             CCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeE-----------E---ee--cCCCCcEEEEEEEEeccceeeeeE
Confidence            799999999998777888999886432 211010011           1   11  11334454  45667777766666


Q ss_pred             EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcC
Q psy670          298 NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       298 ~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      .+.|.....    .-. +...-...+..|+..++.-.+....+..+.|+.+-..+..+..+.    ..+.    ..+.  
T Consensus      1945 ~V~Vle~V~----gL~-I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~----~~G~----~vty-- 2009 (2740)
T TIGR00864      1945 HIEVLEAVR----GLQ-IPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVI----HMGK----DVSY-- 2009 (2740)
T ss_pred             EEEEEEecc----ceE-ecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCccee----ecCC----ceEE--
Confidence            666654211    111 111111125679999999998766677899987644333222211    0111    1222  


Q ss_pred             CCCCCCeeEE--EEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeec
Q psy670          378 PRKEDTGLYK--CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVP  455 (540)
Q Consensus       378 ~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  455 (540)
                       .....|.|+  -+|.|..+.......+.|+..-                                           ..-
T Consensus      2010 -~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i-------------------------------------------~~~ 2045 (2740)
T TIGR00864      2010 -TAEAAGLLEIQLGAFNALGAENITLQLEAQDAL-------------------------------------------MDA 2045 (2740)
T ss_pred             -ccCCCcEEEEEEEEEcccCcccccEEEEEEehe-------------------------------------------eeE
Confidence             123578877  4678888877666666665400                                           000


Q ss_pred             eeecCCcEEEecCCCeEEEEEEEeeecC-CceEEEec-CeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670          456 VIREVPKVVTISKKKTVVIECKVMSMYE-PSVTWMKE-KNTVKEDNKHVVHIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       456 ~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~~v~W~~~-~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~  522 (540)
                      .+...|  .....+..+.|.|.+...+. ..+.|=++ |......+...+.-.....|.|..++...|.
T Consensus      2046 ~L~~~p--~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sHtY~r~G~Y~V~V~a~N~ 2112 (2740)
T TIGR00864      2046 ALQAGP--QDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEHEYLHPGDYRVQVNASNL 2112 (2740)
T ss_pred             EEeecC--cceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEEEecCCccEEEEEEEEcc
Confidence            111112  23455888999999865453 58999776 5554444445555666778999999985443

Note: this model has been restricted to the amino half because for technical reasons.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.67  E-value=6.2e-08  Score=71.53  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CceEEeeCCCeEEEEEE-EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCe-eEEEEEEcCCe
Q psy670          318 PKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHG  395 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~-~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g  395 (540)
                      .....+.+|+.+.|.|. ..|.|.|.|.|++++...... ..+.....+|     .|.|.++..+|+| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEcccc
Confidence            35677889999999997 689999999999876553332 2233333333     7999999999999 79999999764


Q ss_pred             e
Q psy670          396 E  396 (540)
Q Consensus       396 ~  396 (540)
                      .
T Consensus        84 ~   84 (95)
T cd05845          84 R   84 (95)
T ss_pred             c
Confidence            3

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.66  E-value=4.2e-07  Score=67.49  Aligned_cols=72  Identities=15%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEee--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCN  181 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  181 (540)
                      ..+.+.+|+++.|+|.+.+.....+.|++.+..+        ..+.|+.....    .....+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~----~~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF----SSNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC----CCCEEEEEECcCCcccCEEEEEE
Confidence            4567889999999999987766678888755332        23445554421    12345899999999999999999


Q ss_pred             EEcC
Q psy670          182 ACNS  185 (540)
Q Consensus       182 ~~~~  185 (540)
                      +...
T Consensus        81 v~t~   84 (95)
T cd05881          81 LYTD   84 (95)
T ss_pred             EEcc
Confidence            9753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.64  E-value=1.4e-07  Score=68.23  Aligned_cols=77  Identities=18%  Similarity=0.335  Sum_probs=56.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC-Ccee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS-IGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~  189 (540)
                      ...+..|+++.|.|...+ +.+.+.|+++|..+..+.+......         .|.|..++..|+|.|.|.+.-. ....
T Consensus         5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~---------GLlI~~~~~~dsG~Y~C~s~E~gf~~~   74 (85)
T cd05872           5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTD---------GLLILVTSPEHSGTYRCYSEEEGFQQL   74 (85)
T ss_pred             EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCC---------CCEEEECCHhhCEEEEEEEecCCCeEE
Confidence            456789999999999844 4679999999999876555544322         5889999999999999998632 2223


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      ...+.|.|
T Consensus        75 ~~~y~l~v   82 (85)
T cd05872          75 VASYSLNV   82 (85)
T ss_pred             EEEEEEEE
Confidence            44444444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.64  E-value=2.5e-07  Score=68.62  Aligned_cols=81  Identities=16%  Similarity=0.360  Sum_probs=58.0

Q ss_pred             EEeeCCCeEEEEEEEE------c-----cCCCeEEEEECCEEccCCCceE---EEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          321 RSEQGGKLVVMECKVK------A-----KPMPEIVWFHEGKELQQTDRIS---WNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~------~-----~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      ..+.+|+.+.|.|...      +     .....+.|+|++..+.......   .++...+.    .|.|.++..+|+|.|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~----~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED----SIWFRPAELQDSGLY   85 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC----EEEEEeCChhhCeEE
Confidence            5577899999999861      1     1234799999976555433211   12233343    899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|.+.|.......++.|+|
T Consensus        86 ~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEECCCCcceEEEEEEEC
Confidence            9999998877777776654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.63  E-value=6e-07  Score=64.11  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             EEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEE
Q psy670          329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIE  406 (540)
Q Consensus       329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  406 (540)
                      +.|+|.+.| .|.+.|+|++++.++...... ......+....++|.+..-...|...|+|+|.|..-. ...+..|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999987 688899999999999764321 1122344556778999776666666899999997532 3555556554

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.62  E-value=3.3e-07  Score=70.98  Aligned_cols=84  Identities=24%  Similarity=0.436  Sum_probs=56.1

Q ss_pred             CCCeEEEEEEEeecC------CCceEEEeCC-----E-ee--cCCCceEE------EEeecCcceEEEEEEEcCCCCCCC
Q psy670          116 DGDLLVMECVLEASP------MPDIIWYQGT-----K-VI--EDTGRIKM------SKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      .|++|+|.|.+...+      ...+.|+|..     . .+  ........      ...........++|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999996543      4589999962     1 11  11111110      000001123456999999999999


Q ss_pred             eEEEEEEEcCCceeEEEEEEEEec
Q psy670          176 GNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      |.|.|.+.+..+.....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999998877778888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.56  E-value=2e-07  Score=67.07  Aligned_cols=73  Identities=21%  Similarity=0.428  Sum_probs=47.0

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      |.+...+...... +..++|+|.+.+.+ .+.+.|+ +....      ............+.|.|.++..+|.|.|+|.|
T Consensus         2 P~I~~~~~~~~~~-~~~~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a   73 (75)
T PF13927_consen    2 PQISVPPPPVVTS-GGSVTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIA   73 (75)
T ss_dssp             SEEEEESTSEEET-TEEEEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred             CEEEEcCCCcEee-ceeEEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence            3444444433333 33399999999877 7799999 11111      11111122233448999999999999999999


Q ss_pred             Ec
Q psy670          391 KN  392 (540)
Q Consensus       391 ~n  392 (540)
                      +|
T Consensus        74 ~N   75 (75)
T PF13927_consen   74 SN   75 (75)
T ss_dssp             EE
T ss_pred             EC
Confidence            87

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.55  E-value=1.2e-06  Score=64.99  Aligned_cols=72  Identities=15%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEc--------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ..+.+.+|+++.|+|.+.+.....+.|++.+..+        ..+.++.... ..+  ...+|.|++++.+|+|.|.|.+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~-~~~--~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN-FSS--NELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe-CCC--CEEEEEECcCCcccCEEEEEEE
Confidence            3467889999999999998766678887765332        2344554331 122  2447999999999999999999


Q ss_pred             EcC
Q psy670          391 KNF  393 (540)
Q Consensus       391 ~n~  393 (540)
                      ...
T Consensus        82 ~t~   84 (95)
T cd05881          82 YTD   84 (95)
T ss_pred             Ecc
Confidence            653

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.50  E-value=2.8e-06  Score=60.74  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             EEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEe
Q psy670          225 IQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIE  302 (540)
Q Consensus       225 ~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~  302 (540)
                      +.|.|.+.| .|++.|.|++++.++...... ...........++|.+..-..+|...|+|+|.|..-. ......|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999987 899999999999998654321 1122234556678888777777777999999986432 3444445543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.49  E-value=1.2e-06  Score=67.88  Aligned_cols=80  Identities=20%  Similarity=0.407  Sum_probs=55.1

Q ss_pred             CCCeEEEEEEEeecC------CCceEEEeCCE----e----ecCC----------CceEEEEeecCcceEEEEEEEcCCC
Q psy670          116 DGDLLVMECVLEASP------MPDIIWYQGTK----V----IEDT----------GRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p------~~~v~W~~~~~----~----~~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      .|++++|.|.+...|      ...+.|+|...    .    +...          .++.+.    ......++|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence            489999999986553      34699999531    0    1110          111111    111224589999999


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      .+|+|.|.|.+.+..+.....+.|.|.+
T Consensus        77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          77 LEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            9999999999998888788888888764

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.48  E-value=1e-06  Score=67.06  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEe-----e---cC-----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKV-----I---ED-----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-----~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      .|..+.+|+++.|.|.........+.|||+...     +   ..           ..|..+..        ..+|.|.++
T Consensus         6 ~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--------ngSL~I~~v   77 (105)
T cd05774           6 VPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--------NGSLLIQNV   77 (105)
T ss_pred             cCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--------CCcEEEecC
Confidence            345678999999999753333338999996321     1   00           01111111        128999999


Q ss_pred             CCCCCeEEEEEEEcCCc-eeEEEEEEE
Q psy670          171 TKDDGGNYRCNACNSIG-ESNANIALN  196 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~-~~~~~~~l~  196 (540)
                      +.+|+|.|+|.+.+... .....+.|.
T Consensus        78 ~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          78 TQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            99999999999988763 344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.47  E-value=1.7e-06  Score=66.73  Aligned_cols=82  Identities=22%  Similarity=0.432  Sum_probs=54.4

Q ss_pred             CCCeEEEEEEEeecC------------CCceEEEeC--CE---eec-CC----------CceEEEEeecCcceEEEEEEE
Q psy670          116 DGDLLVMECVLEASP------------MPDIIWYQG--TK---VIE-DT----------GRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p------------~~~v~W~~~--~~---~~~-~~----------~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      .|++++|.|.+....            .+.|.|+|.  +.   .+. ..          .|+.+...  ......++|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~--~~~~~~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNY--PAIPSDATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEeccc--CCCCCCcEEEE
Confidence            489999999995432            358999984  21   111 11          12222110  01223469999


Q ss_pred             cCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          168 NNPTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      .+++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus        79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            99999999999999998766777777777763

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.46  E-value=2.3e-06  Score=66.30  Aligned_cols=82  Identities=23%  Similarity=0.491  Sum_probs=55.0

Q ss_pred             CCCeEEEEEEEeecC----------CCceEEEeCC--Eee----cCCC----------ceEEEEeecCcceEEEEEEEcC
Q psy670          116 DGDLLVMECVLEASP----------MPDIIWYQGT--KVI----EDTG----------RIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p----------~~~v~W~~~~--~~~----~~~~----------~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .|++++|.|.+...+          ...+.|+|..  ...    ....          |+.+...  ......++|+|.+
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~asL~I~~   78 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY--PENRGDASLEISR   78 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC--CCCCCcEEEEECC
Confidence            489999999996543          2469999952  111    0111          1111100  1223446899999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      ++.+|+|.|.|.+..........+.|.|.+
T Consensus        79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            999999999999998766778888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.46  E-value=1.2e-06  Score=65.40  Aligned_cols=74  Identities=18%  Similarity=0.332  Sum_probs=53.6

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .|.+...|. ..+..|+.|+|.|... .+...+.|+++|.......       .........|.|.+++.+|+|.|+|..
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-------~~~~~~~~~f~i~~v~~~~~G~Y~C~~   72 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-------PPEPQNKAKFFIPSMKREHAGRYRCYY   72 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-------cCCCceeEEEEccCCChhHCEEEEEEE
Confidence            344544443 4577999999999885 6677899999987543211       011223447999999999999999999


Q ss_pred             EcC
Q psy670          391 KNF  393 (540)
Q Consensus       391 ~n~  393 (540)
                      .+.
T Consensus        73 ~~~   75 (91)
T cd05751          73 RSG   75 (91)
T ss_pred             ECC
Confidence            986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.43  E-value=2.7e-06  Score=65.85  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=56.2

Q ss_pred             CCCeEEEEEEEEccC------CCeEEEEECC-----E-Ecc--CCCc------eEEEEEe-cCCeeEEEEEEcCCCCCCC
Q psy670          325 GGKLVVMECKVKAKP------MPEIVWFHEG-----K-ELQ--QTDR------ISWNVTL-KGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p------~~~i~W~~~~-----~-~~~--~~~~------~~~~~~~-~~~~~~~~L~i~~~~~~d~  383 (540)
                      .|++++|.|.....+      ...|.|++..     . .+.  ....      +...... .......+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            388999999988653      4589999862     1 010  1111      1111110 1112345899999999999


Q ss_pred             eeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          384 GLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       384 G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877788888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.43  E-value=1.4e-06  Score=63.02  Aligned_cols=76  Identities=24%  Similarity=0.424  Sum_probs=54.8

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--  397 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--  397 (540)
                      ...+..|+++.|.|...+. .+.+.|+++|..+..+.++..  ...      -|.|..++.+|+|.|.|.+.- .|-.  
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~--~~~------GLlI~~~~~~dsG~Y~C~s~E-~gf~~~   74 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV--GTD------GLLILVTSPEHSGTYRCYSEE-EGFQQL   74 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE--eCC------CCEEEECCHhhCEEEEEEEec-CCCeEE
Confidence            4567889999999998654 669999999999876544322  222      377889999999999999863 3433  


Q ss_pred             EEEEEEEE
Q psy670          398 NANLTLNI  405 (540)
Q Consensus       398 ~~~~~l~V  405 (540)
                      -.+..|.|
T Consensus        75 ~~~y~l~v   82 (85)
T cd05872          75 VASYSLNV   82 (85)
T ss_pred             EEEEEEEE
Confidence            33444443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.43  E-value=2.6e-06  Score=65.19  Aligned_cols=79  Identities=22%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             CCeEEEEEEEeecC---CCceEEEeCCE--ee---cCC------------CceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          117 GDLLVMECVLEASP---MPDIIWYQGTK--VI---EDT------------GRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       117 G~~v~l~C~~~~~p---~~~v~W~~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      |++++|.|.+....   ...+.|++...  .+   ..+            .|..+...  ......++|.|.+++.+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD--AIAEGSVALRIHNVRASDEG   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc--cccCCcEEEEEEcCChhhCE
Confidence            78899999985322   12688988541  11   000            11111110  11123458999999999999


Q ss_pred             EEEEEEEcCCceeEEEEEEEE
Q psy670          177 NYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       177 ~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      .|+|.+.+..+.....+.|.|
T Consensus        79 ~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          79 LYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEEEecCCcEEEEEEEEEE
Confidence            999999987777777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.42  E-value=1e-06  Score=66.76  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=55.0

Q ss_pred             cCCCeEEEEEEEeec-CC-CceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          115 QDGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..|+.+.|.|.+.|+ |. ..+.|+++|..+..... ........+.....+.|.|.....++.|.|+|.|.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            468899999999887 64 58999999998865543 223333334445566788888888899999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.42  E-value=4.1e-06  Score=65.12  Aligned_cols=80  Identities=13%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccC----CCeEEEEE---------------CCEEccC-CCce--EEEEEecCCeeEEEEEE
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFH---------------EGKELQQ-TDRI--SWNVTLKGDKYHIRLEV  375 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~---------------~~~~~~~-~~~~--~~~~~~~~~~~~~~L~i  375 (540)
                      +....+..|+.+.|.|......    ...|.|.+               +|..... ...+  +.....+......+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            3456688999999999987632    34899944               2222211 1111  11111122223348999


Q ss_pred             cCCCCCCCeeEEEEEEcCCeee
Q psy670          376 KDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       376 ~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      .+++.+|.|.|+|.+.|..+..
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcC
Confidence            9999999999999999976543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.39  E-value=3.2e-06  Score=61.63  Aligned_cols=68  Identities=19%  Similarity=0.349  Sum_probs=47.5

Q ss_pred             EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      +.|.|.+.+ +|.+.+.|+++++.+.... ........+.....+.|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999955 5888999999999886433 1111111122234557888777778889999999987643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.38  E-value=2.4e-06  Score=66.58  Aligned_cols=75  Identities=20%  Similarity=0.393  Sum_probs=53.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE---c-----------cCCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE---L-----------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      +....+.+|++++|.|.+.+.+...+.|++....   .           ....++..  .........+|.|.+++.+|+
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSA--TLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEE--EEcccCCEEEEEECCCCHHHC
Confidence            4556788999999999998777889999985321   0           01122222  222222345899999999999


Q ss_pred             eeEEEEEEcCC
Q psy670          384 GLYKCNIKNFH  394 (540)
Q Consensus       384 G~Y~C~a~n~~  394 (540)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.38  E-value=4.1e-06  Score=61.02  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=48.7

Q ss_pred             EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      +.|+|.+.| +|.+.|+|+++|+.+..... ....... +.....+.|.+.....+|+..|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999965 58889999999998865432 2222222 12333467888777788889999999987643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.37  E-value=2e-06  Score=67.12  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=51.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEe---e-----------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKV---I-----------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.+...+.|||....   .           ....++.+...   .....++|.|.+++.+|+|
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCCHHHCE
Confidence            45688999999999997767779999985321   0           01223332221   1224568999999999999


Q ss_pred             EEEEEEEcCC
Q psy670          177 NYRCNACNSI  186 (540)
Q Consensus       177 ~Y~C~~~~~~  186 (540)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.37  E-value=2.7e-06  Score=62.05  Aligned_cols=66  Identities=23%  Similarity=0.378  Sum_probs=46.3

Q ss_pred             EEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCe--eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          329 VVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDK--YHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       329 v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +.|.|.+.+ +|.+.|.|+++|..+....  .......++.  ..+.|.+.....++.+.|+|+|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999987 5888999999999986433  1122222222  2346777766666778999999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.37  E-value=3.6e-06  Score=62.83  Aligned_cols=73  Identities=15%  Similarity=0.285  Sum_probs=52.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.+...+. ..+..|++++|+|... .+...+.|+++|.......       .........+.|.+++.+|+|.|+|...
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-------~~~~~~~~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-------PPEPQNKAKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-------cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence            44444443 3567899999999885 5677899999987543210       0123334579999999999999999998


Q ss_pred             cC
Q psy670          288 NE  289 (540)
Q Consensus       288 ~~  289 (540)
                      +.
T Consensus        74 ~~   75 (91)
T cd05751          74 SG   75 (91)
T ss_pred             CC
Confidence            75

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.35  E-value=3.8e-06  Score=61.21  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             ccccceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCc
Q psy670            5 KELKSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG   80 (540)
Q Consensus         5 ~~~~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~   80 (540)
                      |.-++|.+.|. |.      +.|+|+|||+++..... .+....++......+.|.|.....+|...|+|++.+...
T Consensus         1 ~~~LtC~a~g~~P~------~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           1 KAKLRCTSSGSKPA------ANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             CEEEEEEecCccCC------CEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            34578999964 76      89999999999875432 333333332444567888878788888999999998764

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.35  E-value=8.5e-07  Score=63.75  Aligned_cols=57  Identities=19%  Similarity=0.468  Sum_probs=40.2

Q ss_pred             EEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          225 IQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       225 ~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      +.|.|.+.+.+ .+.+.|+ ......      ...........+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~------~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSF------NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEE------EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCce------eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            99999999876 7889999 111111      111112223345899999999999999999986

...

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.33  E-value=2.6e-06  Score=64.03  Aligned_cols=77  Identities=23%  Similarity=0.396  Sum_probs=48.8

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCC--------CceEE-----EEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDT--------GRIKM-----SKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      |++|+|.|.........+.|+++.......        .....     .+.....+   .+|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            789999998865556689999965332110        00000     00001111   489999999999999999998


Q ss_pred             cCCce-eEEEEEEE
Q psy670          184 NSIGE-SNANIALN  196 (540)
Q Consensus       184 ~~~~~-~~~~~~l~  196 (540)
                      ...+. ....+.|.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            77643 34444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.33  E-value=5.7e-06  Score=63.25  Aligned_cols=80  Identities=19%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             CCeEEEEEEEEccC---CCeEEEEECCE--Ec---------cC--CCce--EEEEEec-CCeeEEEEEEcCCCCCCCeeE
Q psy670          326 GKLVVMECKVKAKP---MPEIVWFHEGK--EL---------QQ--TDRI--SWNVTLK-GDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       326 g~~v~l~C~~~~~p---~~~i~W~~~~~--~~---------~~--~~~~--~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      |++++|.|......   ...+.|++...  .+         ..  ...+  +.....+ ......+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999986322   23678887542  11         00  0001  1111110 111234899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998887777877776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.32  E-value=2.1e-06  Score=65.05  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=52.1

Q ss_pred             eCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCc-eEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          324 QGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDR-ISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..|+.+.|.|.+.|+ |. ..|+|+++|..+..... .......++. ...+.|.+......+.+.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            368899999999997 53 58999999999876543 1111122222 22346788777777999999999997653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.31  E-value=5.8e-06  Score=62.97  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=49.8

Q ss_pred             CeEEEEEEEeecC---CCceEEEeCCEe----e---c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670          118 DLLVMECVLEASP---MPDIIWYQGTKV----I---E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR  179 (540)
Q Consensus       118 ~~v~l~C~~~~~p---~~~v~W~~~~~~----~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  179 (540)
                      ++|+|.|.+...+   ...+.|+|....    +   .        ...+.+....  ......++|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFL--NSSLEDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEe--CCCCCceEEEEccCCcccCEEEE
Confidence            4689999996544   337999995421    0   0        0001111100  11113458999999999999999


Q ss_pred             EEEEc-CCceeEEEEEEEE
Q psy670          180 CNACN-SIGESNANIALNF  197 (540)
Q Consensus       180 C~~~~-~~~~~~~~~~l~v  197 (540)
                      |.+.. ..|.....+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            99875 5677777777766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.31  E-value=0.00037  Score=64.59  Aligned_cols=173  Identities=14%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCce--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--e
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--E  238 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~  238 (540)
                      .|.|..++...+|.|+-.+-+..+.  ....++|....       +|.+...+.  .+.+|+...-.|.+.. +|+.  .
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr-------~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~  253 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFR-------RPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAA  253 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEec-------CCcccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence            6999999999999999998776553  34456666654       555544333  4567999999999987 5543  5


Q ss_pred             EEEEeCCEEeeccCceEEEEec--CCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeE
Q psy670          239 VKWFKADKLVKESSKIKIIVNE--QDDTYEIICEITDPIGPDS-GTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTF  314 (540)
Q Consensus       239 v~W~~~~~~l~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~  314 (540)
                      +.||.|+..+............  ++....+++++.....+.. -..+|.+.-..... ...+.-.+.  +. ...+|.+
T Consensus       254 lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~--P~-VY~~P~I  330 (466)
T PHA03270        254 FRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGA--PT-VLPRPTI  330 (466)
T ss_pred             EEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeeccccc--Cc-cccCCeE
Confidence            9999999988543322222222  3334445665554333222 37899887433222 222211111  00 0113333


Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTD  356 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~  356 (540)
                      ..     .+..|.   ..|.+..-|. ..+.|+.++......+
T Consensus       331 sv-----~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~  365 (466)
T PHA03270        331 EM-----EFGGDE---AVCTAACVPEGVTLAWLLGADPAPAEK  365 (466)
T ss_pred             EE-----EEeCCE---EEEeccccCCCCEEEEEecCCCCCCcc
Confidence            22     233333   2388876664 4789998876665433

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.31  E-value=1e-05  Score=62.54  Aligned_cols=82  Identities=18%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             CCCeEEEEEEEEccC------CCeEEEEECCEE-------c-cCC------Cce--EEEEEecCCeeEEEEEEcCCCCCC
Q psy670          325 GGKLVVMECKVKAKP------MPEIVWFHEGKE-------L-QQT------DRI--SWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p------~~~i~W~~~~~~-------~-~~~------~~~--~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .|++++|.|.....|      ...|.|++....       + ...      ..+  +..... ......+|.|.+++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence            388999999987653      347999985311       0 000      000  111111 11123489999999999


Q ss_pred             CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          383 TGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       383 ~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|.|.+.+..+.....+.|.|..
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEEE
Confidence            9999999999888888888888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.30  E-value=8.4e-06  Score=62.58  Aligned_cols=82  Identities=24%  Similarity=0.487  Sum_probs=54.1

Q ss_pred             CCCeEEEEEEEeecC-------CCceEEEeCC-----Eee----cCC----------CceEEEEeecCcceEEEEEEEcC
Q psy670          116 DGDLLVMECVLEASP-------MPDIIWYQGT-----KVI----EDT----------GRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~~----------~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .|++++|.|.+.-.|       .+.+.|+|..     ...    ..+          +|..+..+  ......++|.|.+
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~--~~~~~~asL~i~n   78 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGY--PKNRYNASLVLSR   78 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecC--CCCCceEEEEECC
Confidence            378899999975322       3579999841     111    111          12222211  1223456999999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      ++.+|+|.|.|.+..........+.|.|.+
T Consensus        79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999998666667788887763

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.30  E-value=5.2e-06  Score=64.03  Aligned_cols=83  Identities=18%  Similarity=0.324  Sum_probs=53.4

Q ss_pred             CCCeEEEEEEEEccC------------CCeEEEEECC--EE---cc-C------CCce--EEEEEe-cCCeeEEEEEEcC
Q psy670          325 GGKLVVMECKVKAKP------------MPEIVWFHEG--KE---LQ-Q------TDRI--SWNVTL-KGDKYHIRLEVKD  377 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p------------~~~i~W~~~~--~~---~~-~------~~~~--~~~~~~-~~~~~~~~L~i~~  377 (540)
                      .|++++|.|......            .+.|.|++-.  ..   +. .      ...+  +..... .......+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999987532            3589999842  10   10 0      0011  111111 0011234899999


Q ss_pred             CCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          378 PRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ++.+|+|.|.|.+.+........+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998766777777777764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.29  E-value=5e-06  Score=63.27  Aligned_cols=80  Identities=14%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEcc--------CC-C--------ceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ--------QT-D--------RISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~--------~~-~--------~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      ..+.+|+++.|.|.........+.|+|+.....        .. .        .-+.....++     +|.|.+++.+|+
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~D~   82 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQKDT   82 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcccC
Confidence            346789999999975433344899999632110        00 0        0011111112     899999999999


Q ss_pred             eeEEEEEEcCC-eeeEEEEEEEE
Q psy670          384 GLYKCNIKNFH-GELNANLTLNI  405 (540)
Q Consensus       384 G~Y~C~a~n~~-g~~~~~~~l~V  405 (540)
                      |.|+|.+.+.. ......+.|.|
T Consensus        83 G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          83 GFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             EEEEEEEEeCCccEEEEEEEEEC
Confidence            99999999977 45555555543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.29  E-value=8e-06  Score=62.21  Aligned_cols=78  Identities=17%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             CeEEEEEEEEccC---CCeEEEEECCEE----c-----------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          327 KLVVMECKVKAKP---MPEIVWFHEGKE----L-----------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       327 ~~v~l~C~~~~~p---~~~i~W~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      ++++|.|.....+   ...|.|++....    +           ....+.+.....+. ....+|.|.+++.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence            4689999988654   347999986431    0           01001111111111 134589999999999999999


Q ss_pred             EEEc-CCeeeEEEEEEEE
Q psy670          389 NIKN-FHGELNANLTLNI  405 (540)
Q Consensus       389 ~a~n-~~g~~~~~~~l~V  405 (540)
                      .+.. ..|.....+.|.|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9875 5677788887776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.29  E-value=0.00022  Score=66.69  Aligned_cols=164  Identities=22%  Similarity=0.221  Sum_probs=98.1

Q ss_pred             EEEEEcccccCCCeeEEEEEEccCcceeeeEEEEE--eecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNF--SEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP  132 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~  132 (540)
                      ..|+|..++..++|.|+=+..+..+.......++|  ...| .+          ...+-.+.+|+...-.|.+..+ |..
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~P-sv----------sv~~~PvL~Ge~y~A~C~aa~YYPp~  266 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAP-LV----------DLSVHPSLKGENYRAVCVVASYFPHS  266 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCC-cc----------cccCCccccCCCceEEEEeeeecCCC
Confidence            45999999999999999777676555444444444  3333 22          2334456789999999999654 544


Q ss_pred             --ceEEEeCCEeecC-CC-ceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCce-eEEE----EEEEEecCcC
Q psy670          133 --DIIWYQGTKVIED-TG-RIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGE-SNAN----IALNFQGGEN  202 (540)
Q Consensus       133 --~v~W~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~-~~~~----~~l~v~~~~~  202 (540)
                        .+.||+||.++.. .. +........+.-+..++|.+.+... +..=..+|.+.-.... ....    ..-.|+.   
T Consensus       267 Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~---  343 (486)
T PHA03273        267 SVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFV---  343 (486)
T ss_pred             ceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCcccc---
Confidence              5999999998872 22 1122222223334556777776433 3445889998643322 2222    1112221   


Q ss_pred             CCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeCC
Q psy670          203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKAD  245 (540)
Q Consensus       203 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~  245 (540)
                          +|.+     .+.+..|.-   .|.+..-|.  ..+.|+.++
T Consensus       344 ----~P~I-----s~~F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        344 ----APTV-----SVTVEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             ----CCeE-----EEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence                2222     334445554   488876654  679998877

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.29  E-value=0.00021  Score=66.99  Aligned_cols=207  Identities=14%  Similarity=0.171  Sum_probs=112.7

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCC-c--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--
Q psy670          164 RLEINNPTKDDGGNYRCNACNSI-G--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--  237 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--  237 (540)
                      .|.|.+++..++|.|+-.+.+.. +  .....++|.+..       +|.+...+  ..+.+|+...-.|.+.. +|..  
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-------~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~Sv  360 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYK-------RPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSV  360 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEec-------CCCccccC--CccccCCCceEEEEeeeecCCCce
Confidence            79999999999999998765432 2  235566666664       55444433  34568999999999987 5543  


Q ss_pred             eEEEEeCCEEeeccCceEEEE--ecCCCeEEEEEEEeCCCCCC--cEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCC
Q psy670          238 EVKWFKADKLVKESSKIKIIV--NEQDDTYEIICEITDPIGPD--SGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPP  312 (540)
Q Consensus       238 ~v~W~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d--~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p  312 (540)
                      .+.|+.|+..+..........  .++..+..++|.+......+  .-..+|.+.-.....+.+ +.-.+.  +. ...+|
T Consensus       361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat--P~-VY~~P  437 (566)
T PHA03269        361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT--PD-VYPFP  437 (566)
T ss_pred             EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC--Cc-cccCC
Confidence            589999998887532221111  11223444566654332222  347799887533322211 111111  00 01133


Q ss_pred             eEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcC---CCCCC-CeeE
Q psy670          313 TFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD---PRKED-TGLY  386 (540)
Q Consensus       313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~d-~G~Y  386 (540)
                      .+.     +....|.-   .|.+..-|.  ..+.|+.++.............-.+...   -.+|.+   ++.+| --+|
T Consensus       438 tIS-----m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPG---LVNLRS~~pLS~~dgpveY  506 (566)
T PHA03269        438 NVS-----IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKR---FVNLQSSCDTSELDGPITY  506 (566)
T ss_pred             eEE-----EEEeCCEE---EEecccccCCCceEEEEecCCCCCCccceeeccCCCCCC---ceeecccccccccCCceeE
Confidence            332     22333433   488887765  4789998876644333221111111111   234443   33333 2469


Q ss_pred             EEEEEcC
Q psy670          387 KCNIKNF  393 (540)
Q Consensus       387 ~C~a~n~  393 (540)
                      +|++..-
T Consensus       507 TCrL~GY  513 (566)
T PHA03269        507 SCHLDGY  513 (566)
T ss_pred             EEEEeec
Confidence            9998653

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.28  E-value=0.00039  Score=64.43  Aligned_cols=172  Identities=13%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             EEEEEcccccCCCeeEEEEEEccCccee--eeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP  132 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~  132 (540)
                      -.|+|+.++...+|.|+=...+.++...  ..+.|.....+ .+.          ..+--+.+|+...-.|.+..+ |..
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~P-svs----------v~~~PvL~Ge~Y~AtC~va~YYPp~  250 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRP-SLS----------IRPHAVLEGEPFGATCVAANYYPGD  250 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCC-ccc----------ccCCccccCCCceEEEEeeeecCCC
Confidence            4699999999999999999887766443  33444444333 222          233446689999999999654 544


Q ss_pred             --ceEEEeCCEeecCCCceEEEEee-cCcceEEEEEEEcCCCCCC-CeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCC
Q psy670          133 --DIIWYQGTKVIEDTGRIKMSKKS-IGKDTYLLRLEINNPTKDD-GGNYRCNACNSIGE-SNANIALNFQGGENGAGFA  207 (540)
Q Consensus       133 --~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~  207 (540)
                        .+.||+|+.++............ .+.-...++|++.....+. -=+.+|.+.-.... ....+.-.+         .
T Consensus       251 Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~---------~  321 (466)
T PHA03270        251 RAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATG---------A  321 (466)
T ss_pred             ceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccc---------c
Confidence              59999999988543222222211 1222344566655543222 23789998633222 122221111         1


Q ss_pred             CeeccCC-ceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeec
Q psy670          208 PSFIEKP-RIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKE  250 (540)
Q Consensus       208 p~~~~~~-~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~  250 (540)
                      |.+...| -.+.+..|.-   .|.+..-| ...+.|+.++.....
T Consensus       322 P~VY~~P~Isv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~pa  363 (466)
T PHA03270        322 PTVLPRPTIEMEFGGDEA---VCTAACVPEGVTLAWLLGADPAPA  363 (466)
T ss_pred             CccccCCeEEEEEeCCEE---EEeccccCCCCEEEEEecCCCCCC
Confidence            1111112 1334445554   47766544 447999988766543

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.28  E-value=1.1e-05  Score=62.82  Aligned_cols=79  Identities=18%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             CceeecCCCCeEEEEEEeccc----CCCeEEEEe---------------CCEEeecc-C--ceEEEEecCCCeEEEEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAK----PRPEVKWFK---------------ADKLVKES-S--KIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~---------------~~~~l~~~-~--~~~~~~~~~~~~~~~~l~i  271 (540)
                      +..+.+..|+.+.|.|.....    +...|.|.+               +|...... .  +.++...........++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            345566789999999999653    335799943               22221100 0  0111111122344568999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCC
Q psy670          272 TDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+++.+|.|.|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999986543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.28  E-value=0.00024  Score=65.27  Aligned_cols=174  Identities=17%  Similarity=0.256  Sum_probs=98.0

Q ss_pred             eEEEEEEcccccCCCeeEEEEEEccCcc--eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-C
Q psy670           54 YLAVLTIKNVQKSDSGEYKVIAKNKNGE--GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-P  130 (540)
Q Consensus        54 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p  130 (540)
                      ..-.|.|+++...|+|.|+....+....  ....+.+.+...+..+.          ..+-.+..|+...-.|.+..+ |
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVs----------V~a~PVL~Ge~YkAtC~vAnYYP  274 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVD----------VLAPPVLSGENYKASCIVRHFYP  274 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCcc----------ccCCccccCCCceEEEEeeeecC
Confidence            4568999999999999886655554332  23444455554442232          233446689999999999654 5


Q ss_pred             CC--ceEEEeCCEeecCCCceEEEE---eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCC
Q psy670          131 MP--DIIWYQGTKVIEDTGRIKMSK---KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG  205 (540)
Q Consensus       131 ~~--~v~W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~  205 (540)
                      +.  .+.|++||.++..........   .....-+..++|.+.+...+..=..+|.+.-..+....+.  .-..      
T Consensus       275 P~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaa------  346 (490)
T PHA03271        275 PGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATA------  346 (490)
T ss_pred             CCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--eccc------
Confidence            44  599999998875433222211   1122233445666655444444589999864333221111  1111      


Q ss_pred             CCCeeccCCc-eeecCCCCeEEEEEEecccC-CCeEEEEeCCEEee
Q psy670          206 FAPSFIEKPR-IIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVK  249 (540)
Q Consensus       206 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~  249 (540)
                       .|.+-..|. .+....|.-+   |.+..-| ...+.|..++....
T Consensus       347 -tP~VY~~P~ISv~FedG~AV---CtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        347 -IPTVYHHPRISLAFKDGYAI---CTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             -CCccccCCeEEEEEeCCEEE---EeccccCCCcEEEEEecCCCCC
Confidence             222222222 3445556544   6665543 45799998876543

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.27  E-value=0.00022  Score=66.91  Aligned_cols=167  Identities=15%  Similarity=0.173  Sum_probs=96.6

Q ss_pred             EEEEEcccccCCCeeEEEEEEccC-cc--eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKN-GE--GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM  131 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~-~~--~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~  131 (540)
                      ..|+|++++..++|.|.=++.+.. +.  .+..+.|.+...| .+.          ..+--+.+|+...-.|.+..+ |.
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P-sVs----------V~p~PVL~Ge~YkAtC~vA~YYPp  357 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP-NIT----------VIGDPVLLGNPYAAYCKVNKYYPP  357 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC-Ccc----------ccCCccccCCCceEEEEeeeecCC
Confidence            569999999999999987665432 22  3344555554443 222          233446789999999999654 54


Q ss_pred             C--ceEEEeCCEeecCCCceE-EEEeecCcceEEEEEEEcCCCCCC--CeEEEEEEEcCCce-eEEEE----EEEEecCc
Q psy670          132 P--DIIWYQGTKVIEDTGRIK-MSKKSIGKDTYLLRLEINNPTKDD--GGNYRCNACNSIGE-SNANI----ALNFQGGE  201 (540)
Q Consensus       132 ~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~~~~~~~~-~~~~~----~l~v~~~~  201 (540)
                      .  .+.||+|+.++....... ......+.-+..++|.+......|  -=..+|.+.-..+. ...++    .-.|+.  
T Consensus       358 ~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~--  435 (566)
T PHA03269        358 HSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYP--  435 (566)
T ss_pred             CceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcccc--
Confidence            4  599999988886422111 122333334555677764432222  34679998643222 22211    112221  


Q ss_pred             CCCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeCCEEe
Q psy670          202 NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKADKLV  248 (540)
Q Consensus       202 ~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~l  248 (540)
                           .|.+     .+.+..|.-   .|.+..-|.  ..+.|+.++...
T Consensus       436 -----~PtI-----Sm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~  471 (566)
T PHA03269        436 -----FPNV-----SIEIIDGHI---VCLAKCVPRGVVHFNWWINDIPI  471 (566)
T ss_pred             -----CCeE-----EEEEeCCEE---EEecccccCCCceEEEEecCCCC
Confidence                 2222     334455554   487776554  479999887663

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.27  E-value=3.9e-06  Score=64.95  Aligned_cols=72  Identities=21%  Similarity=0.387  Sum_probs=49.6

Q ss_pred             cccCCCeEEEEEEEeec-CCCceEEEeCCEe-----ec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          113 IHQDGDLLVMECVLEAS-PMPDIIWYQGTKV-----IE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .+.+|++++|.|.+.+. +...+.|+|....     +.            ...++.+...   ......+|.|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence            46789999999999765 6668999994321     10            1122222221   11134589999999999


Q ss_pred             CeEEEEEEEcCCc
Q psy670          175 GGNYRCNACNSIG  187 (540)
Q Consensus       175 ~G~Y~C~~~~~~~  187 (540)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.27  E-value=8.4e-06  Score=60.88  Aligned_cols=75  Identities=11%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             eeecCCCCeEEEEEEecc-cCCCe--EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          216 IIPNESGTLIQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      ...+.+|+.++|.|.+.+ .|.+.  |.||+++..+.......  .........+++.+..-+.+|...|+|+|.++...
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--NTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--ccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            334578999999999987 78776  79999999886532111  11123344567777655555556999999987554

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.27  E-value=6.3e-06  Score=59.92  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=48.4

Q ss_pred             EEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          120 LVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       120 v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      +.|.|.+.| +|...++|+|+|..+.............+.....+.|.+.....+++..|+|.+.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999965 67789999999999865432222222222334456888887778888999999988654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.26  E-value=1.1e-05  Score=62.42  Aligned_cols=83  Identities=23%  Similarity=0.422  Sum_probs=54.7

Q ss_pred             CCCeEEEEEEEEccC----------CCeEEEEECC--EEcc----CC------CceEEEEEe---cCCeeEEEEEEcCCC
Q psy670          325 GGKLVVMECKVKAKP----------MPEIVWFHEG--KELQ----QT------DRISWNVTL---KGDKYHIRLEVKDPR  379 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p----------~~~i~W~~~~--~~~~----~~------~~~~~~~~~---~~~~~~~~L~i~~~~  379 (540)
                      .|++++|.|.....+          ...|.|++..  ....    ..      ..+..+...   .......+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            388999999997644          2579999852  1110    00      111111111   111223489999999


Q ss_pred             CCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          380 KEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777778888888864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.26  E-value=0.00028  Score=65.99  Aligned_cols=168  Identities=17%  Similarity=0.186  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--
Q psy670          163 LRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--  237 (540)
Q Consensus       163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--  237 (540)
                      ..|.|..++...+|.|+-.+.+..+..  ...++|....       +|.+...+.  .+.+|+...-.|.+.. +|+.  
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr-------~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv  268 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYN-------APLVDLSVH--PSLKGENYRAVCVVASYFPHSSV  268 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEec-------CCcccccCC--ccccCCCceEEEEeeeecCCCce
Confidence            369999999999999998876655443  4445554453       555544333  4568999999999987 5543  


Q ss_pred             eEEEEeCCEEeec-cC-ceEEEEe-cCCCeEEEEEEEeCCCC-CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCe
Q psy670          238 EVKWFKADKLVKE-SS-KIKIIVN-EQDDTYEIICEITDPIG-PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT  313 (540)
Q Consensus       238 ~v~W~~~~~~l~~-~~-~~~~~~~-~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~  313 (540)
                      .+.|+.+|.++.. .. ....... ++..+..++|.+..... +..-..+|.+.-.....+.+ .+.-...+. ...+|.
T Consensus       269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~-RfsAt~~P~-Vy~~P~  346 (486)
T PHA03273        269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFA-RIAKAGTPS-VFVAPT  346 (486)
T ss_pred             EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCccee-eccccccCc-cccCCe
Confidence            5999999998872 22 1222212 22335556676666433 33448999887533322111 111111100 011333


Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECC
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEG  349 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~  349 (540)
                      +..     ....|+-   .|.+..-|.  ..+.|+.++
T Consensus       347 Is~-----~F~~G~A---VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        347 VSV-----TVEDGDA---VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EEE-----EEeCCEE---EEecccccCCCeeEEEEccC
Confidence            322     2333332   499887776  588998877

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.24  E-value=7.6e-06  Score=61.11  Aligned_cols=74  Identities=14%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             CccccCCCeEEEEEEEee-cCCCc--eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      +..+.+|+.++|+|.+.| .|.+.  |.|||++..+.......   .........++|.+...+.+|...|+|.|.+..+
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCETELDLR   86 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence            445789999999999954 67776  79999999986532111   1111233445788887777777799999987653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.22  E-value=1.6e-05  Score=62.17  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CceEEeeCCCeEEEEEEEEccC----CCeEEEEEC----CEE--cc---------CCCce--EEEEEecCCeeEEEEEEc
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFHE----GKE--LQ---------QTDRI--SWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~~----~~~--~~---------~~~~~--~~~~~~~~~~~~~~L~i~  376 (540)
                      +..+.+.+|++++|.|.....+    ...|.|++-    +..  +.         ...++  +.....+.....++|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4567788999999999986533    236999752    111  10         01111  111111111223479999


Q ss_pred             CCCCCCCeeEEEEEEcCCee
Q psy670          377 DPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +++.+|+|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.22  E-value=2.9e-06  Score=64.10  Aligned_cols=83  Identities=17%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             cCCCeEEEEEEEee-cCCCceEEEeCCEeec--C-----CCceEEEE---eecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          115 QDGDLLVMECVLEA-SPMPDIIWYQGTKVIE--D-----TGRIKMSK---KSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       115 ~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~--~-----~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ..|++|+|.|.... .....+.|++....+.  .     ........   ..........+|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36999999998744 4445799998753321  1     11000000   000111123589999999999999999998


Q ss_pred             cCCcee-EEEEEEEE
Q psy670          184 NSIGES-NANIALNF  197 (540)
Q Consensus       184 ~~~~~~-~~~~~l~v  197 (540)
                      ...+.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            776553 66666665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.20  E-value=9.1e-06  Score=63.31  Aligned_cols=76  Identities=17%  Similarity=0.345  Sum_probs=51.3

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--Ecc--------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQ--------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .|....+.+|++++|.|.+.+ +.+.+.|++...  ...              .....++...... ....+|.|.+++.
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~   81 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP   81 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence            355677889999999999987 677899998532  110              0001111111111 1345899999999


Q ss_pred             CCCeeEEEEEEcCC
Q psy670          381 EDTGLYKCNIKNFH  394 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~  394 (540)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.20  E-value=9.6e-06  Score=60.81  Aligned_cols=67  Identities=13%  Similarity=0.314  Sum_probs=48.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      .+|.+|++|+|.|.... +...+.|+|+|......   ..  .........+.+.|.+++.+|+|.|.|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HL--YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---ec--ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            46789999999998743 55689999988653211   00  1111234456899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.17  E-value=2.2e-05  Score=59.76  Aligned_cols=76  Identities=18%  Similarity=0.420  Sum_probs=48.5

Q ss_pred             eEEEEEEEEccC---CCeEEEEECCEE-----cc---C--C--------CceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          328 LVVMECKVKAKP---MPEIVWFHEGKE-----LQ---Q--T--------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       328 ~v~l~C~~~~~p---~~~i~W~~~~~~-----~~---~--~--------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      +++|.|.....+   ...|.|++....     +.   .  .        ++..+  ..+......+|.|.+++.+|+|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f--~~~~~~~~~sL~I~nv~~sD~GtY   79 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRF--ETPNPIADGALILRNAVQADEGKY   79 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEE--eCCCCCCceEEEEecCccccceEE
Confidence            578999986543   347899983211     10   0  0        11122  111112234899999999999999


Q ss_pred             EEEEEc-CCeeeEEEEEEEE
Q psy670          387 KCNIKN-FHGELNANLTLNI  405 (540)
Q Consensus       387 ~C~a~n-~~g~~~~~~~l~V  405 (540)
                      .|.+.+ ..|..+..+.|.|
T Consensus        80 ~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          80 KCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEEeCCCCCeeeEEEEEe
Confidence            999987 5676677777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.17  E-value=2.8e-05  Score=55.38  Aligned_cols=75  Identities=13%  Similarity=0.240  Sum_probs=51.6

Q ss_pred             EeeCCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          322 SEQGGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      .+..|++++|+|.....+.  +.|.|...+.......      ..++.    +|.+..++..|+|.++|.++........
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~------~~~~k----tL~~~qv~~qdSG~WtC~V~~~~k~~~~   79 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL------NQDKK----TLNLVQLGPNDSGTWDCIVSVNSSEKTL   79 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec------cCCcc----EEEeceeCcccCCEEEEEEEECceEEEE
Confidence            4678999999999965444  4999986554322100      01111    8999999999999999999866544555


Q ss_pred             EEEEEEE
Q psy670          400 NLTLNIE  406 (540)
Q Consensus       400 ~~~l~V~  406 (540)
                      .+.+.|.
T Consensus        80 ~~~V~Vl   86 (88)
T cd07694          80 KLDIKVL   86 (88)
T ss_pred             EeeEEEE
Confidence            5555543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.17  E-value=8.4e-06  Score=61.25  Aligned_cols=76  Identities=24%  Similarity=0.334  Sum_probs=49.6

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCC--------------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQT--------------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |++|+|.|.........|.|++........              ..+........+   .+|.|.+++.+|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence            789999998876566689999875432110              011111111111   389999999999999999998


Q ss_pred             cCCee-eEEEEEEE
Q psy670          392 NFHGE-LNANLTLN  404 (540)
Q Consensus       392 n~~g~-~~~~~~l~  404 (540)
                      ...+. ....+.|.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            87643 34454443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.15  E-value=3.5e-05  Score=59.28  Aligned_cols=38  Identities=26%  Similarity=0.524  Sum_probs=33.5

Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      .++|.|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            46999999999999999999998887778888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.15  E-value=1.2e-05  Score=62.25  Aligned_cols=74  Identities=20%  Similarity=0.349  Sum_probs=50.3

Q ss_pred             EeeCCCeEEEEEEEEcc-CCCeEEEEECCEE-----cc----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          322 SEQGGKLVVMECKVKAK-PMPEIVWFHEGKE-----LQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      .+.+|+.++|.|.+... +...+.|++....     +.          .....+.....+......+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            36689999999999876 6678999985321     00          00111122222222234589999999999999


Q ss_pred             EEEEEEcCCe
Q psy670          386 YKCNIKNFHG  395 (540)
Q Consensus       386 Y~C~a~n~~g  395 (540)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999988764

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.13  E-value=3.7e-05  Score=57.87  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCCCeeEEEEEEc-CCeeeEEEEEEEE
Q psy670          371 IRLEVKDPRKEDTGLYKCNIKN-FHGELNANLTLNI  405 (540)
Q Consensus       371 ~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V  405 (540)
                      .+|.|.+++.+|+|.|+|.+.+ ..|..+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            4899999999999999999999 6788888888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.12  E-value=2e-05  Score=61.92  Aligned_cols=88  Identities=16%  Similarity=0.383  Sum_probs=56.6

Q ss_pred             CceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCE-----Ecc-C-CC----------ceEEEEEecCCeeEEEEEEcCCC
Q psy670          318 PKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGK-----ELQ-Q-TD----------RISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~-----~~~-~-~~----------~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      +....+.+|+++.|.|... ......+.|++...     .+. . ..          ..+.....+......+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4567788999999999998 44566899998322     111 0 00          00111122222334589999999


Q ss_pred             CCCCeeEEEEEEcC-CeeeEEEEEEEE
Q psy670          380 KEDTGLYKCNIKNF-HGELNANLTLNI  405 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~-~g~~~~~~~l~V  405 (540)
                      .+|+|.|.|.+... .........|.|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999887 333444555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.11  E-value=1.5e-05  Score=62.10  Aligned_cols=75  Identities=16%  Similarity=0.334  Sum_probs=50.7

Q ss_pred             CCceeecCCCCeEEEEEEecccCCCeEEEEeCCE--Eee--------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK--LVK--------------ESSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~l~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      .|..+.+.+|++++|.|.+.+ +...+.||+...  .+.              .....++...... .....|.|.+++.
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~   81 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP   81 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence            455677889999999999987 667899999532  110              0000111111111 1345899999999


Q ss_pred             CCcEEEEEEEEcC
Q psy670          277 PDSGTYRCNVKNE  289 (540)
Q Consensus       277 ~d~g~y~C~~~~~  289 (540)
                      +|+|.|.|.+.+.
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 EDSAVYLCASSLG   94 (110)
T ss_pred             hhCEEEEEEeeCC
Confidence            9999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.11  E-value=1.8e-05  Score=59.92  Aligned_cols=81  Identities=17%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             CCeEEEEEEEeecCC-CceEEEeCCE----eec---C--C----CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          117 GDLLVMECVLEASPM-PDIIWYQGTK----VIE---D--T----GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       117 G~~v~l~C~~~~~p~-~~v~W~~~~~----~~~---~--~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      |++++|.|....... ..+.|+|...    .+.   .  +    ..+.-...........++|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999999743322 3699998421    110   0  0    011000000112223468999999999999999998


Q ss_pred             Ec-CCceeEEEEEEEE
Q psy670          183 CN-SIGESNANIALNF  197 (540)
Q Consensus       183 ~~-~~~~~~~~~~l~v  197 (540)
                      .. ..|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            74 4566666666665

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.10  E-value=1.2e-05  Score=60.68  Aligned_cols=79  Identities=19%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             CCCeEEEEEEEEc-cCCCeEEEEECCEEccC-C------------CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          325 GGKLVVMECKVKA-KPMPEIVWFHEGKELQQ-T------------DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       325 ~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .|++|+|.|.... .....+.|++....+.. .            ..+......+..  ..+|.|.+++.+|+|.|.|.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~--~~sL~I~~~~~~DsG~Y~c~v   80 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQN--DYSLQISNLKMEDAGSYRAEI   80 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCC--ceeEEECCCchHHCEEEEEEE
Confidence            6999999998754 44457999986432211 0            111111121121  238999999999999999999


Q ss_pred             EcCCeee-EEEEEEEE
Q psy670          391 KNFHGEL-NANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~-~~~~~l~V  405 (540)
                      .+..|.. ...+.|.|
T Consensus        81 ~~~~~~~~~~~f~L~v   96 (97)
T cd05775          81 NTKNGVTITKEFTLHI   96 (97)
T ss_pred             EcCCCCeEEEEEEEEe
Confidence            9887544 55666655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.09  E-value=5.3e-05  Score=58.36  Aligned_cols=75  Identities=8%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             cccCCCeEEEEEEEeec-CC-CceEEEeCCEeecCCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          113 IHQDGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ....|+.++|.|.+.|+ |. ..++|+|||+.+..... ....... +.....+.|.+.....++...|+|.+.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~   94 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ   94 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence            34578889999999774 54 48999999999864322 2222222 23444567888765444445699999987543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.09  E-value=3.8e-05  Score=60.41  Aligned_cols=78  Identities=15%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccC----CCeEEEEECCE------Ecc----------CCCceE--EEEEecCCeeEEEEEE
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP----MPEIVWFHEGK------ELQ----------QTDRIS--WNVTLKGDKYHIRLEV  375 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p----~~~i~W~~~~~------~~~----------~~~~~~--~~~~~~~~~~~~~L~i  375 (540)
                      |....+.+|+.++|.|......    ...+.|++...      .+.          ...++.  .....+.....++|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999986532    24699986321      000          011111  1111111122358999


Q ss_pred             cCCCCCCCeeEEEEEEcCCe
Q psy670          376 KDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       376 ~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .+++.+|+|.|.|.+.|...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999998754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.08  E-value=1.3e-05  Score=60.87  Aligned_cols=67  Identities=19%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             cccCCCeEEEEEEEeec--CCCceEEEeCCE--ee---c-----C----CCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          113 IHQDGDLLVMECVLEAS--PMPDIIWYQGTK--VI---E-----D----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~--p~~~v~W~~~~~--~~---~-----~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+.+|++++|.|.+.+.  ....+.|||...  ..   .     .    ..++...     .+...+.|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence            46799999999998654  456799998321  11   0     0    1122221     1223458999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+.+
T Consensus        77 ~Y~C~~~~   84 (98)
T cd04984          77 DYYCQVWD   84 (98)
T ss_pred             EEEEEEcc
Confidence            99999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.08  E-value=3.5e-05  Score=54.91  Aligned_cols=76  Identities=11%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ..+..|++++|+|.....+  .+.|.|+..+........           ....+|.+..++..|+|.++|.+.......
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~   77 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNSSEK   77 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECceEE
Confidence            3567899999999995544  449999875443211000           001189999999999999999998765555


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      ...+.|.|.
T Consensus        78 ~~~~~V~Vl   86 (88)
T cd07694          78 TLKLDIKVL   86 (88)
T ss_pred             EEEeeEEEE
Confidence            566666554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.07  E-value=1.6e-05  Score=57.73  Aligned_cols=66  Identities=9%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCc
Q psy670            8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG   80 (540)
Q Consensus         8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~   80 (540)
                      ++|.+.| +|.      +.++|+|||.++............++ .....+.|.+..-..+|...|+|++.+..-
T Consensus         4 LtC~a~gf~P~------~~itW~kng~~l~~~~~~~~~~~~~~-t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           4 LTCKTSGSKPA------ADIRWFKNDKEIKDVKYLKEEDANRK-TFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEeCCccCC------CEEEEEECCEECcCceeeEeeCCCCC-EEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            6799986 554      99999999999865332222222222 444667888877777788899999988654

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.07  E-value=5.5e-05  Score=56.70  Aligned_cols=68  Identities=13%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      ...+..|++++|.|.... ....+.|+|+|......    ...........+.+.|..++.+|+|.|.|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----ecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            345678999999998865 55679999988653211    001112244556899999999999999998764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.06  E-value=3.3e-05  Score=59.67  Aligned_cols=76  Identities=16%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECC--EE---cc-------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEG--KE---LQ-------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~--~~---~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ..|....+.+|++++|.|.+.+.. ...+.|++..  ..   +.       .....++....  ......|.|.+++.+|
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~D   82 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEPED   82 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCChHH
Confidence            345567788999999999997655 5679999742  11   10       00001111111  1234479999999999


Q ss_pred             CeeEEEEEEcC
Q psy670          383 TGLYKCNIKNF  393 (540)
Q Consensus       383 ~G~Y~C~a~n~  393 (540)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.05  E-value=4.5e-05  Score=57.41  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEc-CCceeEEEEEEEE
Q psy670          162 LLRLEINNPTKDDGGNYRCNACN-SIGESNANIALNF  197 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v  197 (540)
                      .++|.|.+++.+|+|.|.|.+.+ ..|..+..+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            35899999999999999999998 5677777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.03  E-value=1.4e-05  Score=61.83  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=47.0

Q ss_pred             CccccCCCeEEEEEEEeecC-CCceEEEeCC--Ee---ec-C--------CCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP-MPDIIWYQGT--KV---IE-D--------TGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~--~~---~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      ...+.+|++++|.|.+.+.. ...+.|||..  +.   +. .        ..++...     .......|.|.+++.+|+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECCCChHHC
Confidence            35678999999999996554 5679999842  11   11 0        0122111     122345799999999999


Q ss_pred             eEEEEEEEc
Q psy670          176 GNYRCNACN  184 (540)
Q Consensus       176 G~Y~C~~~~  184 (540)
                      |.|.|.+.+
T Consensus        84 g~Y~Ca~~~   92 (106)
T cd04980          84 AVYYCQQYG   92 (106)
T ss_pred             EEEEEEEeC
Confidence            999999865

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.02  E-value=2.6e-05  Score=61.46  Aligned_cols=71  Identities=17%  Similarity=0.379  Sum_probs=48.5

Q ss_pred             CccccCCCeEEEEEEEee--cCCCceEEEeC--CEee------cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEA--SPMPDIIWYQG--TKVI------ED-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+  .+...+.|||.  +...      ..           ..++.+...   .......|.|.+
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~   83 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD---VGKSTSTLTIQN   83 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE---CCCCEEEEEEEE
Confidence            356789999999999976  56778999994  2111      00           122222211   111345899999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.01  E-value=8.9e-05  Score=56.97  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=53.0

Q ss_pred             CCeEEEEEEEEccC-------CCeEEEEECC-----EEc----cCCC------ce--EEEEEe-cCCeeEEEEEEcCCCC
Q psy670          326 GKLVVMECKVKAKP-------MPEIVWFHEG-----KEL----QQTD------RI--SWNVTL-KGDKYHIRLEVKDPRK  380 (540)
Q Consensus       326 g~~v~l~C~~~~~p-------~~~i~W~~~~-----~~~----~~~~------~~--~~~~~~-~~~~~~~~L~i~~~~~  380 (540)
                      |++++|.|...-.|       .+.|.|.+..     ...    ..+.      .+  +..... .......+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78899999976432       3689998741     110    0111      11  111111 1112345999999999


Q ss_pred             CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          381 EDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|+|.|.|.+..........+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999766677788887764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.00  E-value=5.2e-05  Score=59.74  Aligned_cols=76  Identities=20%  Similarity=0.327  Sum_probs=50.8

Q ss_pred             CceEEeeCCCeEEEEEEEEc--cCCCeEEEEECC--EEc------cC---------CCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKA--KPMPEIVWFHEG--KEL------QQ---------TDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~--~p~~~i~W~~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      |....+.+|++++|.|.+.+  .+.+.+.|++..  ...      ..         ....++....+.......|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44566788999999999987  567789999842  111      00         001122222222223458999999


Q ss_pred             CCCCCeeEEEEEEcC
Q psy670          379 RKEDTGLYKCNIKNF  393 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~  393 (540)
                      +.+|+|.|.|.+...
T Consensus        85 ~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          85 EKEDSATYYCAYWES   99 (116)
T ss_pred             CHHHCEEEEEEEecC
Confidence            999999999998653

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.00  E-value=3.5e-05  Score=60.58  Aligned_cols=84  Identities=24%  Similarity=0.452  Sum_probs=53.2

Q ss_pred             CccccCCCeEEEEEEEe-ecCCCceEEEeCCE-----eec---C-----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTK-----VIE---D-----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~-----~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ...+.+|+++.|.|... ......+.|++...     .+.   .           ..+..+..+   ......+|.|.++
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~i~~l   86 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN---GSQNNFSLTIKNL   86 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE---TTTTEEEEEESSE
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec---ccCCeEEEEECCC
Confidence            45688999999999997 34555899998321     111   0           112111111   1122358999999


Q ss_pred             CCCCCeEEEEEEEcCCc-eeEEEEEEEE
Q psy670          171 TKDDGGNYRCNACNSIG-ESNANIALNF  197 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~-~~~~~~~l~v  197 (540)
                      +.+|+|.|.|.+..... .....+.|.|
T Consensus        87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999987632 2344444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.00  E-value=0.00014  Score=56.01  Aligned_cols=39  Identities=21%  Similarity=0.453  Sum_probs=33.6

Q ss_pred             EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      ..++|.|.+++.+|+|.|.|.+..........+.|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            346899999999999999999998877778888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.98  E-value=5.8e-05  Score=53.89  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             EEEEEEEeec-CC-CceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          120 LVMECVLEAS-PM-PDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       120 v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ++|.|.+.|+ |. ..+.|+|+|+.+..+.. ........+.....+.|.|.....++...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999875 55 48999999987543321 11122233445556688888777788899999998754

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.98  E-value=3.5e-05  Score=58.58  Aligned_cols=71  Identities=18%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             cccCCCeEEEEEEEee-cCCCceEEEeCCEe-----e--------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          113 IHQDGDLLVMECVLEA-SPMPDIIWYQGTKV-----I--------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                      .+.+|++++|.|.... .....+.|+|....     +        ....++.+...   ......+|.|.+++.+|+|.|
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD---PDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec---CCCCEEEEEEcCCCHHHCEEE
Confidence            4678999999999854 34557999985321     1        01123322211   223445899999999999999


Q ss_pred             EEEEEcCC
Q psy670          179 RCNACNSI  186 (540)
Q Consensus       179 ~C~~~~~~  186 (540)
                      .|.+....
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.98  E-value=6.1e-05  Score=56.13  Aligned_cols=75  Identities=13%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ..+.++|.|.+.|+ |. ..|+|.++|..+.............++.+  .+.|.+......+...|+|.+.+.......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~   91 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED   91 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence            45668999999995 54 47899999998744321111112222233  346667655555677899999998765443

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.97  E-value=5.1e-05  Score=56.50  Aligned_cols=70  Identities=17%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             CCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          222 GTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       222 g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      |+.+.|.|.+.+ +|++.|+|+.++..+........ .....+  ...+.|.+..-..++...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQS-SSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEE-EETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeee-eccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            789999998865 99999999999988722222221 222333  33457877766666777999999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.96  E-value=4.2e-05  Score=62.89  Aligned_cols=85  Identities=18%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CccccCCCeEEEEEEEe-ecCCCceEEEeCCEeec----CC--------CceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIE----DT--------GRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      .+.|.+|++++|.|... +...+.+.|+|.++.+.    .+        .++.+    .......+.|+|.+++.+|+|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~----mS~s~~~StItIknVt~sDeGc   99 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY----LSKSFNESTILIKNVSLKDNGC   99 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE----eccCCCcceEEEEeCChhhCeE
Confidence            34678999999999984 55667899999643321    01        11111    0111223589999999999999


Q ss_pred             EEEEEEcC-Cc-eeEEEEEEEEec
Q psy670          178 YRCNACNS-IG-ESNANIALNFQG  199 (540)
Q Consensus       178 Y~C~~~~~-~~-~~~~~~~l~v~~  199 (540)
                      |+|.+..- .| ..+...-|+|..
T Consensus       100 Y~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        100 YTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEEEEecCCCCCceeEEEEEEEc
Confidence            99998643 45 567777888875

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.96  E-value=7.3e-05  Score=58.48  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=48.0

Q ss_pred             CceeecCCCCeEEEEEEecccC----CCeEEEEeC----CEE--ee---c------cCce--EEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKA----DKL--VK---E------SSKI--KIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----~~~--l~---~------~~~~--~~~~~~~~~~~~~~l~i~  272 (540)
                      +..+.+.+|++++|.|.....+    ...|.|++.    +..  +.   .      ..++  +...........+.|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4456778899999999986432    236999752    111  10   0      0010  111111111224579999


Q ss_pred             CCCCCCcEEEEEEEEcCCC
Q psy670          273 DPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~  291 (540)
                      +++.+|+|.|.|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999997544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.96  E-value=9e-05  Score=56.08  Aligned_cols=79  Identities=16%  Similarity=0.285  Sum_probs=50.3

Q ss_pred             CCeEEEEEEecccCC-CeEEEEeCCE----Eee---c--c----Cce--EEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          222 GTLIQMKCKCSAKPR-PEVKWFKADK----LVK---E--S----SKI--KIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       222 g~~~~l~C~~~~~p~-~~v~W~~~~~----~l~---~--~----~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      |++++|.|....... ..|.|++...    .+.   .  .    ..+  ..... ......+.|.|.+++.+|+|.|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence            788999999764332 3699998432    110   0  0    000  11111 1223346899999999999999998


Q ss_pred             EE-cCCCCeeeeEEEEE
Q psy670          286 VK-NEFGESNANLNLNI  301 (540)
Q Consensus       286 ~~-~~~~~~~~~~~l~v  301 (540)
                      +. .+.|.....+.|+|
T Consensus        80 ~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEeCCCCCeeeEEEEEE
Confidence            87 46777777777765

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.95  E-value=0.00011  Score=54.81  Aligned_cols=78  Identities=12%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             CeEEEEEEeccc-CCCeEEEEeCCE----Eeec-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          223 TLIQMKCKCSAK-PRPEVKWFKADK----LVKE-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       223 ~~~~l~C~~~~~-p~~~v~W~~~~~----~l~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      ++++|.|..... ....|+|.|...    .+..           .-..+.... ......++|.|.+++.+|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence            368899998653 334799988421    1110           000111111 12233468999999999999999997


Q ss_pred             E-cCCCCeeeeEEEEE
Q psy670          287 K-NEFGESNANLNLNI  301 (540)
Q Consensus       287 ~-~~~~~~~~~~~l~v  301 (540)
                      . .+.|+...++.|.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence            6 57888888887776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.95  E-value=4e-05  Score=57.38  Aligned_cols=76  Identities=9%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             ccccCCCeEEEEEEEeec--CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          112 TIHQDGDLLVMECVLEAS--PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~--p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..+..|+.++|.|.+.|+  |.. .++|.|+++...............+.....+.|.+..-...+.-.|+|.+.+...
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            346678999999999887  443 7899998753321111111122223344445777776555566799999988653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.95  E-value=6e-05  Score=56.15  Aligned_cols=73  Identities=12%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             CCCeEEEEEEEeec-CC-CceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          116 DGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .++.++|.|.+.|+ |. ..+.|+++|..+.... .........+.....+.|.+..-...+...|+|.+.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            45669999999885 54 4799999999864321 11111112233444567777766566778999999987644

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.93  E-value=0.0037  Score=57.78  Aligned_cols=170  Identities=17%  Similarity=0.204  Sum_probs=95.3

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--e
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--E  238 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~  238 (540)
                      .|.|.++...++|.|.-...+.....  .+.+.+.+..      .+|.+...+.  ++..|+...-.|.+.. +|+.  .
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~------RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~Svr  279 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ------RPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVY  279 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe------cCCCccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence            79999999999997755554433332  3444444443      1444443333  3567999999999987 5544  5


Q ss_pred             EEEEeCCEEeeccCceEEEE--ec--CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670          239 VKWFKADKLVKESSKIKIIV--NE--QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF  314 (540)
Q Consensus       239 v~W~~~~~~l~~~~~~~~~~--~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~  314 (540)
                      +.|+.+|..+..........  .+  ...+..+++.+.+...+..-..+|.+.-.......+.  .-..       .|.+
T Consensus       280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaa-------tP~V  350 (490)
T PHA03271        280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATA-------IPTV  350 (490)
T ss_pred             EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--eccc-------CCcc
Confidence            99999998875443222211  12  2334445555555433444489998875433322222  2111       1222


Q ss_pred             EeCCceE-EeeCCCeEEEEEEEEccC-CCeEEEEECCEEcc
Q psy670          315 IEKPKIR-SEQGGKLVVMECKVKAKP-MPEIVWFHEGKELQ  353 (540)
Q Consensus       315 ~~~~~~~-~~~~g~~v~l~C~~~~~p-~~~i~W~~~~~~~~  353 (540)
                      ...|... ....|.-   .|.+..-| ...+.|+.++....
T Consensus       351 Y~~P~ISv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~p  388 (490)
T PHA03271        351 YHHPRISLAFKDGYA---ICTIECVPSGITVRWLVHDEPQP  388 (490)
T ss_pred             ccCCeEEEEEeCCEE---EEeccccCCCcEEEEEecCCCCC
Confidence            2222222 2333433   38887665 34789998776543

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.92  E-value=7.1e-05  Score=56.86  Aligned_cols=71  Identities=25%  Similarity=0.340  Sum_probs=47.8

Q ss_pred             EeeCCCeEEEEEEEEc-cCCCeEEEEECCEEc-------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          322 SEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      .+.+|++++|.|.... .....+.|++.....             ....++.+  ..+.......|.|.+++.+|+|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL--TDDPDNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE--EecCCCCEEEEEEcCCCHHHCEEEE
Confidence            4678999999999865 345678999854211             00122222  2222223458999999999999999


Q ss_pred             EEEEcCC
Q psy670          388 CNIKNFH  394 (540)
Q Consensus       388 C~a~n~~  394 (540)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9987754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.92  E-value=6.9e-05  Score=55.75  Aligned_cols=72  Identities=21%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             CCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          117 GDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       117 G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      |+.+.|.|.+ .++|.+.+.|+.++..+.............+.....+.|.+.....++...++|.+.+....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999988 67899999999998877221111111122223334568888877777888999999987643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.91  E-value=9e-05  Score=58.33  Aligned_cols=74  Identities=24%  Similarity=0.388  Sum_probs=49.5

Q ss_pred             CceEEeeCCCeEEEEEEEEcc-CCCeEEEEECC--EE---c---------cCCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEG--KE---L---------QQTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      +..+.+..|++++|.|..... ....+.|++..  ..   +         ....++.+.  .+......+|.|.+++.+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~--~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVN--FQKAQKSISLTISALQLED   83 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEE--EeccCCEEEEEECCCCHHH
Confidence            455678899999999998754 45679999832  11   0         001222222  1122224589999999999


Q ss_pred             CeeEEEEEEcC
Q psy670          383 TGLYKCNIKNF  393 (540)
Q Consensus       383 ~G~Y~C~a~n~  393 (540)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=97.91  E-value=0.00012  Score=51.38  Aligned_cols=66  Identities=29%  Similarity=0.503  Sum_probs=47.2

Q ss_pred             EEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       120 v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      +.|.|.+.+.+...+.|++++......... ..............|.|.++..+|+|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999977777799999988766443221 111122234445689999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.90  E-value=0.00011  Score=57.73  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             CceeecCCCCeEEEEEEecccC----CCeEEEEeCCE------Eee-c---------cCce--EEEEecCCCeEEEEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKADK------LVK-E---------SSKI--KIIVNEQDDTYEIICEI  271 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~------~l~-~---------~~~~--~~~~~~~~~~~~~~l~i  271 (540)
                      |..+.+.+|+.++|.|......    ...+.|++...      .+. -         ..++  +...........+.|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4456677899999999986422    24699987321      110 0         0000  00111111122367999


Q ss_pred             eCCCCCCcEEEEEEEEcCCC
Q psy670          272 TDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .+++.+|+|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999997544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.90  E-value=0.00013  Score=54.33  Aligned_cols=78  Identities=14%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CeEEEEEEEEccC-CCeEEEEECCE----Ecc--C---C----Cce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          327 KLVVMECKVKAKP-MPEIVWFHEGK----ELQ--Q---T----DRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       327 ~~v~l~C~~~~~p-~~~i~W~~~~~----~~~--~---~----~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ++++|.|.....+ ..+|.|.+...    .+.  .   .    ..+  +.... .......+|.|.+++.+|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence            3588999986433 34789987421    111  0   0    011  11111 11112348999999999999999997


Q ss_pred             E-cCCeeeEEEEEEEE
Q psy670          391 K-NFHGELNANLTLNI  405 (540)
Q Consensus       391 ~-n~~g~~~~~~~l~V  405 (540)
                      . ...|+...+..|.|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence            5 46788888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.90  E-value=0.0002  Score=55.19  Aligned_cols=72  Identities=18%  Similarity=0.364  Sum_probs=46.1

Q ss_pred             ecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcE-EEEEEEEcCCC
Q psy670          218 PNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSG-TYRCNVKNEFG  291 (540)
Q Consensus       218 ~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g-~y~C~~~~~~~  291 (540)
                      ....|+.++|.|.+.+ +|. ..++|++||..+..... ......+++++  .+.|.+... ..|.+ .|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCC
Confidence            3446888999999998 564 58999999999864322 22222222233  345666543 34434 69999998643

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.90  E-value=0.00013  Score=55.45  Aligned_cols=78  Identities=15%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             eEEEEEEecccC---CCeEEEEeCCE-----Eee---c--cC----c--eEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          224 LIQMKCKCSAKP---RPEVKWFKADK-----LVK---E--SS----K--IKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       224 ~~~l~C~~~~~p---~~~v~W~~~~~-----~l~---~--~~----~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      +++|.|......   ...|.|++...     .+.   .  ..    .  .+.............|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            588999986433   33799998321     110   0  00    0  0111111112234579999999999999999


Q ss_pred             EEEc-CCCCeeeeEEEEE
Q psy670          285 NVKN-EFGESNANLNLNI  301 (540)
Q Consensus       285 ~~~~-~~~~~~~~~~l~v  301 (540)
                      .+.+ +.|.....+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9987 6676666666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.88  E-value=0.00016  Score=54.08  Aligned_cols=67  Identities=19%  Similarity=0.401  Sum_probs=41.9

Q ss_pred             CCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          326 GKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       326 g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ++.++|.|.+.|+ |.. .+.|.++|..+.............++.+  .+.|.+..   .+.+.|+|++.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            6789999999995 543 8899999964433221111111222222  33566544   377899999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.88  E-value=0.00016  Score=51.57  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=43.2

Q ss_pred             EEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEE-EecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          329 VVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNV-TLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       329 v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~-~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ++|.|.+.|+ |. ..+.|+++|.++.......... ..++.. ..+.|.+......+...|+|.|.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999985 54 4899999999754432211111 122222 24467777666677789999998764

>cd00096 Ig Immunoglobulin domain

Probab=97.85  E-value=0.00017  Score=50.68  Aligned_cols=66  Identities=24%  Similarity=0.426  Sum_probs=47.4

Q ss_pred             EEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      +.|.|.+.+.+...+.|++++.......................|.|.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988777899999988776543321111112223334589999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.84  E-value=5.2e-05  Score=58.16  Aligned_cols=72  Identities=17%  Similarity=0.300  Sum_probs=45.0

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCE----e---e---cCCCceE-------EEEeecCcceEEEEEEEcCCCCCCC
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTK----V---I---EDTGRIK-------MSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~----~---~---~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      .+.+|++|+|.|.+.......+.|||...    .   +   .......       ..............|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            46789999999998555456799998431    1   1   0000000       0000001112345899999999999


Q ss_pred             eEEEEEEEc
Q psy670          176 GNYRCNACN  184 (540)
Q Consensus       176 G~Y~C~~~~  184 (540)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.84  E-value=5.4e-05  Score=57.39  Aligned_cols=75  Identities=9%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             cccCCCeEEEEEEEeec-C-CCceEEEeCCEeecCCCc-eEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          113 IHQDGDLLVMECVLEAS-P-MPDIIWYQGTKVIEDTGR-IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ....++.++|.|.+.|+ | ...+.|++||+.+..+.. ........+.....+.|.+..-..++...|+|.+.+...
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l   90 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL   90 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence            44567889999999774 5 448999999998854311 111122234445556788877666678899999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.83  E-value=0.00027  Score=52.59  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      .|+..+|.|.+.| +|. ..++|.++|..+...........+.++++.  +.|.+..   ++...|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            3566799999999 564 479999999987654322222233344443  3455543   45569999999864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.82  E-value=0.00021  Score=52.21  Aligned_cols=70  Identities=16%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEE-eecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSK-KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..++.++|.|.+.++ |.. .|.|+++|..+.......... ...+.....+.|.+.   ..+...|+|.+.+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            448999999999875 544 799999999887654333222 334455555677777   5666799999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.82  E-value=8.7e-05  Score=58.41  Aligned_cols=71  Identities=23%  Similarity=0.403  Sum_probs=47.6

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeC--CEe---e-c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQG--TKV---I-E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~--~~~---~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      .+.+.+|++++|.|..... ....+.|||.  +..   + .        ...++.+...   .....++|.|.+++.+|+
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISALQLEDS   84 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECCCCHHHC
Confidence            4568899999999998543 4557999983  211   1 0        0122322211   112245899999999999


Q ss_pred             eEEEEEEEc
Q psy670          176 GNYRCNACN  184 (540)
Q Consensus       176 G~Y~C~~~~  184 (540)
                      |.|.|.+..
T Consensus        85 g~Y~C~~~~   93 (116)
T cd07706          85 AKYFCALST   93 (116)
T ss_pred             EEEEEEEEC
Confidence            999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.81  E-value=0.00028  Score=52.70  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=44.9

Q ss_pred             CCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          220 ESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       220 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      ..|+.++|.|.+.+ +|.. +++|+++|..+...........+.++++...-.+ .+...+...|+|.+.+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L-~~~~~~~~~ysC~V~H~~l   84 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVML-ETTPSRGDTYTCVVEHSSL   84 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEE-EEcCCCCCEEEEEEEeCCC
Confidence            35788999999999 5654 7999999998765422122222233344432222 2233456699999998654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.81  E-value=4.9e-05  Score=57.59  Aligned_cols=68  Identities=18%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             EEecCCCeEEEEEEEeeecC--CceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEE
Q psy670          464 VTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKII  532 (540)
Q Consensus       464 ~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~  532 (540)
                      .....++.++|.|.|.|+-+  .+|+|++||..+..+ ..........+|+|+....+.-...+++.++-+
T Consensus        12 ~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699          12 EELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG-VQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             HHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc-EeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            34456788999999999543  388999999998643 222223344578888777776666655444333

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.80  E-value=4.5e-05  Score=57.92  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=41.5

Q ss_pred             ecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEec--CCeEEEEEEeeeeeeeeCCee
Q psy670          466 ISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQV--KDVSMNFELWLGIVEKRGPSI  529 (540)
Q Consensus       466 ~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~--~~g~y~c~~~~~~~~~~~~~~  529 (540)
                      +..|..++|.|.+.|+.+.  .++|+|||..+.............  .+|+|+....+.....++..+
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~   80 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAG   80 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCC
Confidence            3347789999999996554  779999999876543222222222  258888777776555444333

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.80  E-value=9.7e-05  Score=56.12  Aligned_cols=74  Identities=9%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             ccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEee----cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          114 HQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKS----IGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      +..|+.++|.|.+.|+ |.. .+.|+++|+.+............    .+.....+.|.|..-...+...|+|.+.+...
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            4457889999999885 443 68999999987543211111111    13344456777765555567789999988653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.78  E-value=0.00036  Score=52.11  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ..|+.++|.|.+.|+ |.. .+.|+++|+.+... .......+..+.....+.|.+..   .+...|+|.+.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            467889999999885 554 79999999987654 11222222223344445666543   4667999999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.78  E-value=0.0003  Score=57.95  Aligned_cols=87  Identities=17%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             eeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeecc--Cc--------eEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          216 IIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKES--SK--------IKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~--~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      ...+.+|++++|.|... +...+.++|+|....+..-  ..        .+... .......+.|+|.+++.+|+|.|+|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~-mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY-LSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE-eccCCCcceEEEEeCChhhCeEEEE
Confidence            45678899999999985 5567789999964322110  00        01110 0112233589999999999999999


Q ss_pred             EEEc-CCC-CeeeeEEEEEee
Q psy670          285 NVKN-EFG-ESNANLNLNIEA  303 (540)
Q Consensus       285 ~~~~-~~~-~~~~~~~l~v~~  303 (540)
                      .... +.| ..+....|.|..
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEc
Confidence            8774 566 677788888876

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.78  E-value=0.00015  Score=54.18  Aligned_cols=70  Identities=9%  Similarity=0.084  Sum_probs=47.7

Q ss_pred             ccccccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            3 FPKELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         3 ~~~~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      +++...+|.+. |+|+      +.|+|+++   +............++ ...-.+.|.+.....+|.-.|+|++.+..-.
T Consensus        15 ~~~~va~C~s~~gkP~------a~ItW~~~---~~~~~~~~~~~~~~g-~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPP------ATISWETT---LGGEAETQSKENPNG-TVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCC------CEEEEEeC---CCCcceeEeecCCCC-CEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            56778899995 8888      99999997   211111111122222 3445678999888888888999999987644


Q ss_pred             e
Q psy670           82 G   82 (540)
Q Consensus        82 ~   82 (540)
                      .
T Consensus        85 ~   85 (95)
T cd05719          85 E   85 (95)
T ss_pred             C
Confidence            3

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.78  E-value=0.00011  Score=56.68  Aligned_cols=69  Identities=19%  Similarity=0.371  Sum_probs=44.6

Q ss_pred             cccCCCeEEEEEEEeec-CCCceEEEeCCEe---------e--cCC-----------CceEEEEeecCcceEEEEEEEcC
Q psy670          113 IHQDGDLLVMECVLEAS-PMPDIIWYQGTKV---------I--EDT-----------GRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~---------~--~~~-----------~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .+++|++++|.|.+.+. ....+.|||....         +  ...           .++....   ......+.|+|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence            46789999999998654 3457999984221         0  000           1111111   1122235799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|+|.|.|...+
T Consensus        79 ~~~~Dsg~YyCa~~~   93 (107)
T cd07700          79 VKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCHHHCEEEEEeEcC
Confidence            999999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.75  E-value=0.0004  Score=51.97  Aligned_cols=67  Identities=22%  Similarity=0.468  Sum_probs=42.1

Q ss_pred             CCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          222 GTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       222 g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      ++.++|.|.+.| +|.. .++|++++..+...........+.++.+.  +.|.+..   .+...|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            678999999999 4554 89999999643322211111222333433  3555543   377899999988643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.74  E-value=0.00018  Score=53.46  Aligned_cols=74  Identities=8%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             ccccccceeee-CcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            3 FPKELKSYTLE-GEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         3 ~~~~~~~c~~~-g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      .|...++|.+. |.|.      +.|+|+++..   ...........++ +..-.+.|.+.....+|...|+|++.+....
T Consensus        15 ~~~~va~C~s~~gkPa------a~IsW~~~~~---g~~~~~~~~~~~g-t~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          15 IPVPVAKCVSANGRPP------ARISWSSTLG---GNANTTSKENGDG-TVTVTSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             CccEEEEEEcCCCCCC------cEEEEEcCCC---CCeeEEEEeCCCC-CEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            57778899877 8888      9999999822   1111111122222 3345678999888888888999999997654


Q ss_pred             eeeeE
Q psy670           82 GSSTV   86 (540)
Q Consensus        82 ~~~~~   86 (540)
                      ....+
T Consensus        85 ~~~~~   89 (95)
T cd07703          85 EPQLL   89 (95)
T ss_pred             CCeEE
Confidence            44333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.74  E-value=0.00019  Score=53.22  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=35.1

Q ss_pred             CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670          468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~  522 (540)
                      .|+..+|.|.|.|+-++  .++|+|||..+. +. ....+-...+|+|.....+.-.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~-~~~~~~p~~d~tyq~~s~l~~~   68 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV-EQSDLSFSKDWTFYLLKSTEFT   68 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc-EECcEEECCCCCEEEEEEEEEC
Confidence            46677999999996544  789999999986 32 2223444556666655554333

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.73  E-value=0.00012  Score=55.66  Aligned_cols=70  Identities=16%  Similarity=0.284  Sum_probs=45.7

Q ss_pred             EeeCCCeEEEEEEEEcc--CCCeEEEEECCE--Ecc----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          322 SEQGGKLVVMECKVKAK--PMPEIVWFHEGK--ELQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      .+.+|++++|.|.+.+.  ....+.|++...  ...          .....++....++  ....|.|.+++.+|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence            35689999999998765  455799988322  110          0000112222222  3458999999999999999


Q ss_pred             EEEEcC
Q psy670          388 CNIKNF  393 (540)
Q Consensus       388 C~a~n~  393 (540)
                      |.+.+.
T Consensus        80 C~~~~~   85 (98)
T cd04984          80 CQVWDS   85 (98)
T ss_pred             EEEccC
Confidence            998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.72  E-value=0.00031  Score=52.26  Aligned_cols=53  Identities=21%  Similarity=0.339  Sum_probs=36.0

Q ss_pred             CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeee
Q psy670          468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~  521 (540)
                      .|+..+|.|.+.|+-+.  .++|++||..+..+. ....+....+|+|.....+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~-~~~~~~~~~Dgty~~~s~L~v   68 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV-SETRYYPRQDLSFQKFSYLNF   68 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCce-EEeeeEeCCCCcEEEEEEEEE
Confidence            36668999999995443  889999999886542 223344555677776555543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.69  E-value=0.00061  Score=50.48  Aligned_cols=69  Identities=17%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ..|+..+|.|.+.|+ |.. .+.|+|||+.+..........+..+.....+.|.+.   ..+...|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence            357778999999885 443 799999999886222222233333444444566665   456778999998854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.68  E-value=0.00022  Score=53.35  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=44.3

Q ss_pred             ceeecCCCCeEEEEEEeccc--CC-CeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcC
Q psy670          215 RIIPNESGTLIQMKCKCSAK--PR-PEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~--p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      ....+..|+.++|.|.+.++  |. ..|+|.++++...... ......+.++++.  +.|.+......+.-.|+|.+.+.
T Consensus         7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~   85 (96)
T cd07696           7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP   85 (96)
T ss_pred             CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence            33445568999999999987  43 3689999875332111 1111122333333  34555443333445899999987


Q ss_pred             CC
Q psy670          290 FG  291 (540)
Q Consensus       290 ~~  291 (540)
                      ..
T Consensus        86 ~l   87 (96)
T cd07696          86 DL   87 (96)
T ss_pred             CC
Confidence            53

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.67  E-value=0.00054  Score=51.15  Aligned_cols=71  Identities=14%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             CCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          116 DGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       116 ~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ......+.|.+ .|+|.+.|.|+++   +.............+.....+.|.+.....+|+-.|+|++.+.....
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            34457889999 6889999999997   11111111222222334455688888888888889999999876443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.64  E-value=0.00014  Score=56.18  Aligned_cols=64  Identities=13%  Similarity=0.217  Sum_probs=40.4

Q ss_pred             EEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeC
Q psy670          463 VVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRG  526 (540)
Q Consensus       463 ~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~  526 (540)
                      ...+..++.++|.|.+.|+-+.  +|+|+|||..+..+..........++|+|+....+.-...++
T Consensus        12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w   77 (115)
T cd05769          12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW   77 (115)
T ss_pred             hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh
Confidence            3344467789999999995444  889999999887543211112222237777666665555443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.64  E-value=0.00058  Score=49.87  Aligned_cols=69  Identities=20%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             CCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++.++|.|.+.++ |.. .|.|+++|..+.............++.+  .+.|.+.   ..+...|+|++.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            48899999999984 544 6899999999876544333332233333  3356665   55667899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.63  E-value=0.00033  Score=54.18  Aligned_cols=79  Identities=11%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             ccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceE-EEEee-cCcceEEEEEEEcCCCCCC-CeEEEEEEEcCCce
Q psy670          114 HQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIK-MSKKS-IGKDTYLLRLEINNPTKDD-GGNYRCNACNSIGE  188 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~  188 (540)
                      +..++.++|.|.+.++ |.. .+.|+|||..+..+.... ..... .+.....+.|.|......+ ...|+|.+.+....
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            4456789999999875 553 899999999876542211 11111 1334445678888665544 67999999987655


Q ss_pred             eEEE
Q psy670          189 SNAN  192 (540)
Q Consensus       189 ~~~~  192 (540)
                      ....
T Consensus        95 ~~~~   98 (115)
T cd05769          95 DTDK   98 (115)
T ss_pred             ccee
Confidence            4433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.62  E-value=0.00072  Score=50.45  Aligned_cols=75  Identities=12%  Similarity=0.256  Sum_probs=44.8

Q ss_pred             CeEEEEEEecc-cCCCeEEEEeCCE----Eeec-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          223 TLIQMKCKCSA-KPRPEVKWFKADK----LVKE-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       223 ~~~~l~C~~~~-~p~~~v~W~~~~~----~l~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +.++|.|.... .....|+|.|...    .+..           .-..++.... ......+|.|.+++.+|+|.|+|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~   79 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL   79 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence            35789999864 3344688988432    1110           0001111111 1113468999999999999999988


Q ss_pred             Ec-CCCCeeeeEE
Q psy670          287 KN-EFGESNANLN  298 (540)
Q Consensus       287 ~~-~~~~~~~~~~  298 (540)
                      .. +.|...+.+.
T Consensus        80 ~t~P~g~~~~~i~   92 (96)
T cd05889          80 VTYPQGSWEKVIE   92 (96)
T ss_pred             EeCCCCCeEEEEE
Confidence            75 5666555443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.62  E-value=0.00057  Score=53.94  Aligned_cols=76  Identities=20%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccC------CCeEEEEECCEE------cc--CC-----Cce--EEEEEecCCeeEEEEEEc
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP------MPEIVWFHEGKE------LQ--QT-----DRI--SWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p------~~~i~W~~~~~~------~~--~~-----~~~--~~~~~~~~~~~~~~L~i~  376 (540)
                      |..+.+.+|+.++|.|......      ...+.|++....      +.  ..     ..+  +.....+.....++|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4556788999999999875322      245899985321      00  00     011  111111223334589999


Q ss_pred             CCCCCCCeeEEEEEEcC
Q psy670          377 DPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~  393 (540)
                      +++.+|+|.|.|++...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.61  E-value=0.00051  Score=51.22  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=42.0

Q ss_pred             eCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCeeE--EEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          324 QGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ..+..++|.|.+.|+ |.. .++|.++|..+......... ..+++.+.  +.|.+..-.  ....|+|.+.+..
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~-~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEK-DKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccE-ecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            345678999999995 433 68999999987654322222 22233443  355554322  3345999998854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.60  E-value=0.00038  Score=51.92  Aligned_cols=74  Identities=24%  Similarity=0.430  Sum_probs=45.4

Q ss_pred             CeEEEEEEEee-cCCCceEEEeCCE----eec-----------C--CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670          118 DLLVMECVLEA-SPMPDIIWYQGTK----VIE-----------D--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR  179 (540)
Q Consensus       118 ~~v~l~C~~~~-~p~~~v~W~~~~~----~~~-----------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  179 (540)
                      +.++|.|.... ....++.|.|...    .+.           .  ..|..+...    ....++|.|.+++.+|+|.|+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~----~~~d~sI~i~nvt~~D~G~Y~   76 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS----TREDMSLSFNNATEEDVGLYC   76 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC----CCCccEEEEcCCCcccCEEEE
Confidence            35899999843 2334789988421    110           0  022222211    112358999999999999999


Q ss_pred             EEEEcC-CceeEEEEEE
Q psy670          180 CNACNS-IGESNANIAL  195 (540)
Q Consensus       180 C~~~~~-~~~~~~~~~l  195 (540)
                      |.+... .|.....+.|
T Consensus        77 C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          77 CSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             EEEEeCCCCCeEEEEEE
Confidence            999754 5655655554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.59  E-value=0.00038  Score=53.73  Aligned_cols=69  Identities=22%  Similarity=0.387  Sum_probs=45.0

Q ss_pred             EeeCCCeEEEEEEEEcc-CCCeEEEEECCEE---c--------cC-----------CCceEEEEEecCCeeEEEEEEcCC
Q psy670          322 SEQGGKLVVMECKVKAK-PMPEIVWFHEGKE---L--------QQ-----------TDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~---~--------~~-----------~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      .+.+|++++|.|.+.+. ....+.|++....   .        ..           ..++..  ..........|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~--~~~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSI--RVTSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEE--EEECCCCEEEEEECCC
Confidence            36789999999998764 3457999984221   0        00           011211  1122223447999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      +.+|+|.|.|...+
T Consensus        80 ~~~Dsg~YyCa~~~   93 (107)
T cd07700          80 KPEDSGTYFCMTVG   93 (107)
T ss_pred             CHHHCEEEEEeEcC
Confidence            99999999999854

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.58  E-value=0.00049  Score=51.21  Aligned_cols=75  Identities=13%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             CeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          118 DLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       118 ~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      ..+.++|.+ .|.|.+.|+|+++..   ............+.....+.|.+.....+|+..|+|++.+........+.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~---g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLG---GNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCC---CCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            347899988 578999999998721   111111111112233445688888888888899999999976544444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.52  E-value=0.00085  Score=50.03  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             cCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEE--EEEEeCCCCCCcEEEEEEEEcCC
Q psy670          219 NESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEI--ICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      +..++.++|.|.+.+ +|. ..++|.++|..+...........+.+ ++..  .|.+..-  +....|+|.+.+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~--~~~~~ysC~V~H~g   85 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKD--SLGKKFRCIYKHEG   85 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECch--hCCCeEEEEEEECC
Confidence            334667899999999 554 36899999998754432222222222 4443  4444332  13346999999853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.48  E-value=0.00074  Score=53.28  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             CceeecCCCCeEEEEEEecccC------CCeEEEEeCCEE------ee-cc-C-----c--eEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP------RPEVKWFKADKL------VK-ES-S-----K--IKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~~~~------l~-~~-~-----~--~~~~~~~~~~~~~~~l~i~  272 (540)
                      |..+.+.+|+.++|.|......      ...+.|++....      +. .. .     .  .++..........+.|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            5566788999999999875321      345899985321      11 00 0     0  0111111223334689999


Q ss_pred             CCCCCCcEEEEEEEEcC
Q psy670          273 DPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~  289 (540)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.47  E-value=0.00093  Score=49.91  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=42.3

Q ss_pred             CCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEe-cCCe-eEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          325 GGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTL-KGDK-YHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~-~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      .++.++|.|.+.++-+  ..|+|.++|.. ............ ++.. ..+.|.+..........|+|++.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4667999999999543  37899999998 333211111122 2322 23456665543334567999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.46  E-value=0.001  Score=52.17  Aligned_cols=75  Identities=17%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccC--CCeEEEEECC--E-E--c---cC-CC--------ceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEG--K-E--L---QQ-TD--------RISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~--~-~--~---~~-~~--------~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      |....+.+|++++|.|......  ...+.|++-.  . +  +   .. ..        ..++....+.......|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456688999999999976533  4568999832  1 1  1   00 00        0112222222223347999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.44  E-value=0.00093  Score=49.55  Aligned_cols=75  Identities=13%  Similarity=0.227  Sum_probs=52.4

Q ss_pred             CccccCCCeEEE-EEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVM-ECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l-~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ...+.+|+.+.+ .|.+ .|.|.+.|+|+.+.....   ......+..+.-...+.|.+...+.+|+-.++|.+.+....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            445678899988 9988 678999999998633221   11222222334445568888888888899999999987543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.38  E-value=0.00081  Score=50.21  Aligned_cols=56  Identities=13%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeee
Q psy670          468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKR  525 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~  525 (540)
                      .++.++|.|.+.|+-+.  +|+|+|||.. ..+.. ........+|+|+....+.-...+
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~-~~~~~~~~dgty~~~s~L~v~~~~   72 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVK-TYPAVLQSGGLYTASSQLTVPASE   72 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcE-ECCCEeCCCCCEEEEEEEEEeHHH
Confidence            46679999999996443  8899999998 33221 111122236777776666544444

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.34  E-value=0.00046  Score=51.50  Aligned_cols=71  Identities=13%  Similarity=0.151  Sum_probs=43.8

Q ss_pred             eeCCCeEEEEEEEEccC--C-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          323 EQGGKLVVMECKVKAKP--M-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~p--~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ...+..++|+|.+.++.  . ..+.|.++|..  ...........++. ...+.|.+..-.......|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            44678899999999854  2 37899999875  11110111112222 2234677765555555679999988753

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.34  E-value=0.00074  Score=51.74  Aligned_cols=68  Identities=18%  Similarity=0.345  Sum_probs=44.3

Q ss_pred             eeCCCeEEEEEEEEccCCCeEEEEECCEE----c---c---CCC----------ceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          323 EQGGKLVVMECKVKAKPMPEIVWFHEGKE----L---Q---QTD----------RISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~p~~~i~W~~~~~~----~---~---~~~----------~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      +.+|++++|.|.+.......+.|++....    .   .   ...          ..++.....  .....|.|.+++.+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~sD   80 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS--SNSFVLTLKNFQKEN   80 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec--CCEEEEEECCCCHHH
Confidence            56899999999986554567999984321    1   0   000          011111111  234589999999999


Q ss_pred             CeeEEEEEEc
Q psy670          383 TGLYKCNIKN  392 (540)
Q Consensus       383 ~G~Y~C~a~n  392 (540)
                      +|.|.|.+.+
T Consensus        81 sgtY~Ca~~~   90 (104)
T cd05720          81 EGYYFCSVAS   90 (104)
T ss_pred             CEEEEEEEcc
Confidence            9999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.33  E-value=0.00098  Score=52.31  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=46.2

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--E-E--e---ecc-Cc--------eEEEEecCCCeEEEEEEEeCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--K-L--V---KES-SK--------IKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~-~--l---~~~-~~--------~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      |....+.+|++++|.|......  ...+.||+..  + +  +   ... ..        .++............|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456678999999999986532  4569999832  1 1  1   000 00        011111111122346999999


Q ss_pred             CCCCcEEEEEEEEc
Q psy670          275 IGPDSGTYRCNVKN  288 (540)
Q Consensus       275 ~~~d~g~y~C~~~~  288 (540)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999997764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.33  E-value=0.13  Score=47.56  Aligned_cols=156  Identities=13%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             ceEEeeCCCeEEEEEEEEc--c-CCCeEEEEECCEEccCC-----------------CceEEEEEe--cCCeeEEEEEEc
Q psy670          319 KIRSEQGGKLVVMECKVKA--K-PMPEIVWFHEGKELQQT-----------------DRISWNVTL--KGDKYHIRLEVK  376 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~--~-p~~~i~W~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~L~i~  376 (540)
                      ....+..|..+.|.|...-  + ....+.|...|-++.+.                 ..+.+....  ..+...++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3455667999999999863  2 34468998766554321                 112111110  011224589999


Q ss_pred             CCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeece
Q psy670          377 DPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPV  456 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  456 (540)
                      .+.-+.+|-|+|+|........+..-|.|..                                              ...
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d----------------------------------------------~V~  385 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVAD----------------------------------------------HVF  385 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEecc----------------------------------------------EEE
Confidence            9999999999999988766666666666654                                              111


Q ss_pred             eecCCcEEEecCCC-eEEEEEEEeee--cCCceEEEecCeecCCCCeEEE--EEEecCCeEEEEEEeeeeeeeeC
Q psy670          457 IREVPKVVTISKKK-TVVIECKVMSM--YEPSVTWMKEKNTVKEDNKHVV--HIEQVKDVSMNFELWLGIVEKRG  526 (540)
Q Consensus       457 i~~~~~~~~~~~g~-~~~l~C~v~g~--p~~~v~W~~~~~~l~~~~~~~~--~~~~~~~g~y~c~~~~~~~~~~~  526 (540)
                      +.      ...+|. .-.+.|-+-..  .++++.|.-+|........-.+  .-.+.-+|-|...+.|.+-.+++
T Consensus       386 f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~d  454 (500)
T PHA02914        386 FK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKD  454 (500)
T ss_pred             EE------EEeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCcc
Confidence            11      122333 34467887543  3458999999877654432111  11222356666666665555454

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.26  E-value=0.00057  Score=45.67  Aligned_cols=51  Identities=22%  Similarity=0.470  Sum_probs=35.1

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      .|..|+|+|....   ..+.|.+++..+.....              .+.+.+.. +++|.|+|.+.+.
T Consensus         6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE--------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCC---CCceEEeCCccCCCCCc--------------eEEeeccC-CCCceEEEEeCCC
Confidence            5899999997542   23999999865544222              34444444 7899999999643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.24  E-value=0.0011  Score=44.68  Aligned_cols=60  Identities=23%  Similarity=0.454  Sum_probs=41.0

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      ..++|.|+|.+    ...|.|++ |..+.....             .+|.+.....+-.|.|.|.+++    ......|.
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~-------------~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQ   62 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVSN-------------TLLDLGSRINDPRGTYSCKESE----PNKEKTLQ   62 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Ccccccccc-------------cEEeccCcccCCCcceEecCcc----CCCcEEEE
Confidence            35679999965    24599999 655543221             1788888888889999999877    23344455


Q ss_pred             EE
Q psy670          405 IE  406 (540)
Q Consensus       405 V~  406 (540)
                      |.
T Consensus        63 Vy   64 (69)
T cd07691          63 VY   64 (69)
T ss_pred             EE
Confidence            54

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.23  E-value=0.00066  Score=45.39  Aligned_cols=51  Identities=25%  Similarity=0.504  Sum_probs=35.3

Q ss_pred             CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .|.+|+|+|...+   ..+.|++++..+.....               .+.+.+.. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCC---CCceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence            5889999997532   23999999866654222               34444444 8899999998643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.18  E-value=0.0013  Score=44.34  Aligned_cols=50  Identities=20%  Similarity=0.541  Sum_probs=36.0

Q ss_pred             CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670          116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      ..++|.|+|.+    ..+|.|+++....... .              .+|.+.....+-.|.|.|.+++
T Consensus         5 ~~~~V~L~C~~----~tsi~W~kG~~~~~~~-~--------------~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKKGKEILEVS-N--------------TLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEecCccccccc-c--------------cEEeccCcccCCCcceEecCcc
Confidence            44679999965    2569999944333221 1              1788888888999999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02633 hypothetical protein; Provisional

Probab=97.16  E-value=0.0011  Score=43.39  Aligned_cols=38  Identities=29%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             EEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecC
Q psy670           57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED   94 (540)
Q Consensus        57 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~   94 (540)
                      .|.|-++..+|+|.|.|..+|.......++.|+|....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            79999999999999999999988888888888887543

>smart00406 IGv Immunoglobulin V-Type

Probab=97.15  E-value=0.0015  Score=47.38  Aligned_cols=61  Identities=21%  Similarity=0.426  Sum_probs=38.0

Q ss_pred             eEEEEEEEeecCCC--ceEEEeCCE--e---ecC-------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          119 LLVMECVLEASPMP--DIIWYQGTK--V---IED-------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       119 ~v~l~C~~~~~p~~--~v~W~~~~~--~---~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                      ++.|.|.+......  .+.|++...  .   +..             ..++.....   ......+|.|.+++.+|+|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~i~~~~~~D~G~Y   77 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD---TSKNDVSLTISNLRVEDTGTY   77 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec---CcCCEEEEEEcCCCHHHCEEE
Confidence            47899998654443  799998431  1   110             112221111   113346899999999999999


Q ss_pred             EEEE
Q psy670          179 RCNA  182 (540)
Q Consensus       179 ~C~~  182 (540)
                      .|.+
T Consensus        78 ~C~v   81 (81)
T smart00406       78 YCAV   81 (81)
T ss_pred             EEcC
Confidence            9964

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.11  E-value=0.00088  Score=49.97  Aligned_cols=69  Identities=10%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             CcEEEecCCCeEEEEEEEeeec--C-CceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670          461 PKVVTISKKKTVVIECKVMSMY--E-PSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY  533 (540)
Q Consensus       461 ~~~~~~~~g~~~~l~C~v~g~p--~-~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~  533 (540)
                      |....+..++.++|.|.+.|+.  . ..|+|.++|..   +. .........+|+|.....+.-..+++..+.-+.
T Consensus        11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~---~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt   82 (99)
T cd04986          11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK---EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA   82 (99)
T ss_pred             cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc---Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence            4334455688999999999954  2 38999999875   11 222223344677776666665555555444433

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.06  E-value=0.0028  Score=45.90  Aligned_cols=63  Identities=22%  Similarity=0.430  Sum_probs=37.9

Q ss_pred             eEEEEEEEEccCCC--eEEEEECCE--E---ccC-----------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          328 LVVMECKVKAKPMP--EIVWFHEGK--E---LQQ-----------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       328 ~v~l~C~~~~~p~~--~i~W~~~~~--~---~~~-----------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .++|.|.+.....+  .+.|++...  .   +..           ....+............+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36799998765443  789988432  0   100           00111222222123345899999999999999996


Q ss_pred             E
Q psy670          390 I  390 (540)
Q Consensus       390 a  390 (540)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.06  E-value=0.0037  Score=46.01  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=43.0

Q ss_pred             cCCCCeEEEEEEecc-cCC--CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          219 NESGTLIQMKCKCSA-KPR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      +.+|..+++.|.+.+ +|.  ..+.|++....+...........+......+.+++...+.++...|+|.|.....
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            468999999999986 665  5799998666654432111000001112223455544444444499999986543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG0613|consensus

Probab=97.05  E-value=0.0044  Score=65.93  Aligned_cols=260  Identities=16%  Similarity=0.117  Sum_probs=143.7

Q ss_pred             eeCcceeEEeecceeeeeecCeecccCCceEEEEecCcccee---------------------------eEEEEEEcccc
Q psy670           12 LEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY---------------------------YLAVLTIKNVQ   64 (540)
Q Consensus        12 ~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~---------------------------~~~~L~i~~~~   64 (540)
                      ..|.|+      +...|+.+|..+..+..+++....++..+.                           ...++.|.+..
T Consensus       213 s~gqp~------~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~  286 (1205)
T KOG0613|consen  213 SAGQPE------PLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDG  286 (1205)
T ss_pred             ecCCCc------cchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccC
Confidence            447777      899999999988877777766554431111                           11234455555


Q ss_pred             cCCCeeEEEEEEccCcceeeeEEEEEeecCCcc-----ccCCCCCCCCC-----CCCccccCCCeEEEEEEEeecCCCc-
Q psy670           65 KSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL-----KVPGGKAPRFP-----KKPTIHQDGDLLVMECVLEASPMPD-  133 (540)
Q Consensus        65 ~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~-----~i~~~~~~~~~-----~~~~~v~~G~~v~l~C~~~~~p~~~-  133 (540)
                      .++.+.|+|...+..+.....+...+.......     ......++..+     ...+....+..+++.|...+.+.+. 
T Consensus       287 ~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~  366 (1205)
T KOG0613|consen  287 PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDE  366 (1205)
T ss_pred             CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCch
Confidence            666667777766665554443333322211111     11111111111     1122345677899999998887775 


Q ss_pred             eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC
Q psy670          134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK  213 (540)
Q Consensus       134 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~  213 (540)
                      +.|+.++.....+........   .......+.|..+...+.+.|.|.+.|..|.........+.....  +..+.....
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~---~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~--gt~~~~~kk  441 (1205)
T KOG0613|consen  367 AQGYHGEEVSSESLGALPCPV---GTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP--GTQPPKFKK  441 (1205)
T ss_pred             heeeccccccccccccccccc---ccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC--CCCCccccc
Confidence            999998766544332211111   112223788999999999999999999988764443333332221  123333333


Q ss_pred             CceeecCCC--CeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          214 PRIIPNESG--TLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       214 ~~~~~~~~g--~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      ....+...+  +.+.+.|...+.+.+  .++|++.+.........      .......+|.+.-....+.+.|.-....
T Consensus       442 ~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~------l~r~~~tslLlk~~~~~~~A~~~~a~~~  514 (1205)
T KOG0613|consen  442 DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVT------LTRDVLTSLLLKVASLSDGAQYTRALRT  514 (1205)
T ss_pred             cccccccccCCcccccccCCCCccccceeEeeccCCccccccccc------ccccchhhheeeccCCCccchhhhhhhc
Confidence            333333333  778899998887644  45666655443221110      0111122566666677788877544433

>KOG0613|consensus

Probab=97.02  E-value=0.0084  Score=63.88  Aligned_cols=255  Identities=13%  Similarity=0.089  Sum_probs=145.7

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      ....++...|.|.+.+.+.+.+.|+.+..........            ..+..|.+....+.+.|+|...+..+.....
T Consensus       240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~------------~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~  307 (1205)
T KOG0613|consen  240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKG------------GNTKTIQNDGPEPELSWTVADKRQGCQDRFK  307 (1205)
T ss_pred             cccchhheeeeEEeecCCCchHHHHhcchhhhcccCC------------CccccccccCCccccceeeecccCCccccee
Confidence            4557788999999988888888887765433222110            0156777777788888888888776654333


Q ss_pred             EEEEEecC---cCC------CCCCC---eeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEe
Q psy670          193 IALNFQGG---ENG------AGFAP---SFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVN  259 (540)
Q Consensus       193 ~~l~v~~~---~~~------~~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~  259 (540)
                      +...+...   ...      ...++   ........+....+..+++.|...+.+.+. +.|+.++............. 
T Consensus       308 v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-  386 (1205)
T KOG0613|consen  308 VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP-  386 (1205)
T ss_pred             eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc-
Confidence            33222211   000      00111   112222344556678899999998877665 99999877655443221111 


Q ss_pred             cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC--CeEEEEEEEEc
Q psy670          260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG--KLVVMECKVKA  337 (540)
Q Consensus       260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g--~~v~l~C~~~~  337 (540)
                       ........+.+..+...+.+.|.|.+.|..|.........+....  .+..+.............+  +.+.+.|.+.+
T Consensus       387 -~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~--~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s  463 (1205)
T KOG0613|consen  387 -VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM--PGTQPPKFKKDVSTTDLLTVKDEITVRTPDSS  463 (1205)
T ss_pred             -cccccCcchhhhhcCcccccccccceeccCCcccccchhhccccc--CCCCCccccccccccccccCCcccccccCCCC
Confidence             111222367788888999999999999988865444333333321  1223333333333333333  78889999888


Q ss_pred             cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          338 KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       338 ~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+.+  .++|++++-+.....   .....+.   ..+|.+......|.|.|.-.
T Consensus       464 ~~~~~~~~tt~~~~~~~s~~s---~~l~r~~---~tslLlk~~~~~~~A~~~~a  511 (1205)
T KOG0613|consen  464 TSMPMTTVTTIKDGLPLSDRS---VTLTRDV---LTSLLLKVASLSDGAQYTRA  511 (1205)
T ss_pred             ccccceeEeeccCCccccccc---ccccccc---hhhheeeccCCCccchhhhh
Confidence            7755  445555544332211   1111111   11566666777788887433

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.01  E-value=0.007  Score=44.94  Aligned_cols=74  Identities=12%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             eeecCCCCeEEE-EEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          216 IIPNESGTLIQM-KCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       216 ~~~~~~g~~~~l-~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      ...+.+|+.+.+ .|.+. +.|+++|+|+.+......  .......++.....+.+.+...+.+|...++|.+.+..-
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            345667888888 99985 589999999986332211  111111123334455777766666677799999998744

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.89  E-value=0.0084  Score=45.68  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC---CeEEEEECCE-Ecc------------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGK-ELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ....+..|+.++|+|.+.|...   ..+.|.|... .+.            .....+..+..+.+..+..|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3455677889999999977543   3678887321 110            01122223444555556799999999999


Q ss_pred             CeeEEEEE
Q psy670          383 TGLYKCNI  390 (540)
Q Consensus       383 ~G~Y~C~a  390 (540)
                      .+.|.|..
T Consensus        86 Ta~Y~Ca~   93 (115)
T cd05721          86 TDIYFCKI   93 (115)
T ss_pred             CeEEEEEe
Confidence            99999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=96.86  E-value=0.0033  Score=41.15  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      .|+|-++..+|+|.|.|.++|..-....++.|+|..
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            799999999999999999999888888888888864

>KOG1480|consensus

Probab=96.83  E-value=0.00037  Score=69.17  Aligned_cols=182  Identities=16%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC----eEEEEeCCEEeeccCceEEEEecC-C--CeEEEEEEEeCCCCCCc
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQ-D--DTYEIICEITDPIGPDS  279 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~l~~~~~~~~~~~~~-~--~~~~~~l~i~~~~~~d~  279 (540)
                      -|.|+..+....+..|..+.|.|.+...+..    .-.|.......      .+...+. .  ........|.....++.
T Consensus        24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~------~~~~~d~tsg~~~~~~si~Isr~~v~~~   97 (909)
T KOG1480|consen   24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHE------KLEGTDETSGLGVREVSIDISRQQVETS   97 (909)
T ss_pred             cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccce------eeeccCcccceeEEeeeeeeehhhhhcc
Confidence            4556667777788889999999999654433    23455433221      1111111 1  11112333333333322


Q ss_pred             ---EEEEE--EEEcCCCCeee-eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEc
Q psy670          280 ---GTYRC--NVKNEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKEL  352 (540)
Q Consensus       280 ---g~y~C--~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~  352 (540)
                         -.|.|  .+....|.... ...+.+.+.      ...+...+....+..+..+.+.|.. .+.|...+.|++++..+
T Consensus        98 ~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~------rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~  171 (909)
T KOG1480|consen   98 GGPEDYWCQCVAWSDDGTVKSRKATVRIAYL------RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI  171 (909)
T ss_pred             cCccceeeeeeeecCCCcchhhhHHHHHHHH------HHhhccChhhheecccccccccccCcccchhhhhhccccCCCC
Confidence               25665  45555552111 011111111      1233444555667778888888875 46788899999998887


Q ss_pred             cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670          353 QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM  407 (540)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  407 (540)
                      .+......  ..+.     .|.+..+...|.|+|+|.|.|..+.. ...+.+.|..
T Consensus       172 ~pd~n~~~--~~d~-----~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv  220 (909)
T KOG1480|consen  172 DPDANVIR--ASDH-----NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV  220 (909)
T ss_pred             Cccccchh--hhcC-----CccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence            76433221  1222     58888999999999999999987643 3344444443

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.61  E-value=0.014  Score=43.02  Aligned_cols=70  Identities=16%  Similarity=0.271  Sum_probs=41.9

Q ss_pred             ccCCCeEEEEEEEe-ecCC--CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670          114 HQDGDLLVMECVLE-ASPM--PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       114 v~~G~~v~l~C~~~-~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      +.+|..+++.|.+. ..|.  ..+.|+++...+....-... ........-.+.+++.....+|.-+|+|.|.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~-~~~ks~~~~~~~vtftptreD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLED-MDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccc-cccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence            47899999999995 3555  47999998777654421110 00000011112555555555555599999864

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02982 hypothetical protein; Provisional

Probab=96.43  E-value=0.027  Score=47.05  Aligned_cols=122  Identities=12%  Similarity=0.267  Sum_probs=68.8

Q ss_pred             ccccCCCeEEEEEEEe-ecCCCceEEEeCCE-eecC--CCceEEEE-----------eecCcceEEEEEEEcCCCCCCCe
Q psy670          112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTK-VIED--TGRIKMSK-----------KSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~-~~~~--~~~~~~~~-----------~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      +....+++|.|.|... +....+..|+++.. -+.+  .+...+..           .....+...++|+|+++..++.|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            3456799999999973 33344789998542 2321  01111111           11122233469999999999999


Q ss_pred             EEEEEEEcCCceeEE-EEEEEEecCcCCCCCCCeeccCCceeecCC-CCeEEEEEEecccCCCeEEEEeCCE
Q psy670          177 NYRCNACNSIGESNA-NIALNFQGGENGAGFAPSFIEKPRIIPNES-GTLIQMKCKCSAKPRPEVKWFKADK  246 (540)
Q Consensus       177 ~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~v~W~~~~~  246 (540)
                      -|+|.+....+.... .--+.|+..      ...+       .+.+ ...-.+.|-+......-..|..+|-
T Consensus       114 CYtc~~ks~~~k~E~c~kCl~V~~~------~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV  172 (251)
T PHA02982        114 CFTCEAKDAEGKEETCEKCLEIQKE------DILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGI  172 (251)
T ss_pred             ceEEEEecCCCchheeheeeeEecc------eEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence            999999986654322 333344210      0001       1112 3345688988654433338887765

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.10  E-value=0.013  Score=45.79  Aligned_cols=87  Identities=17%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             eeCCCeEEEEEEEEcc-----CCCeEEEEECCEEccCCCc--eEEEEE-------ecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          323 EQGGKLVVMECKVKAK-----PMPEIVWFHEGKELQQTDR--ISWNVT-------LKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      ..-++.+.|.|.+...     +...|.|.++|..+-.-+.  ......       ..-....++|.+...+.- .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            4468899999998652     2235899998887532111  000000       000001125777664433 799999


Q ss_pred             EEEcCCeeeEEEEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEMVRF  410 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~~~~  410 (540)
                      .+.......+..+.|......|
T Consensus       103 eVt~~~~ege~~i~Lk~~~~sw  124 (130)
T PF08204_consen  103 EVTELSREGETTIELKYRVVSW  124 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-----
T ss_pred             EEEecCCCceEEEEEEEEEEEE
Confidence            9999988888888888866444

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.08  E-value=0.036  Score=42.33  Aligned_cols=73  Identities=10%  Similarity=0.145  Sum_probs=45.6

Q ss_pred             CceeecCCCCeEEEEEEecccC--C-CeEEEEeCCE-Eee------c------cCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--R-PEVKWFKADK-LVK------E------SSKIKIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~-~l~------~------~~~~~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      +....+..|..++|.|.+.++.  . ..+.|+|... .+.      .      ..........+.......|.+.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            3445567788999999997743  2 4688988421 110      0      001111122233334468999999999


Q ss_pred             CcEEEEEEE
Q psy670          278 DSGTYRCNV  286 (540)
Q Consensus       278 d~g~y~C~~  286 (540)
                      |.+.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999965

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=95.78  E-value=1.1  Score=38.47  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=54.9

Q ss_pred             ceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEE-cCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCe
Q psy670          133 DIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEI-NNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPS  209 (540)
Q Consensus       133 ~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i-~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~  209 (540)
                      .+.||.||.++.... +........+..+..++|.+ .+...+..-..+|.+.-.... ....+...+         .|.
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~---------~P~   78 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA---------TPS   78 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc---------ccc
Confidence            589999999886332 11222222234455677888 333444456899998643322 222222111         222


Q ss_pred             eccCCc-eeecCCCCeEEEEEEecccC--CCeEEEEeCCEEe
Q psy670          210 FIEKPR-IIPNESGTLIQMKCKCSAKP--RPEVKWFKADKLV  248 (540)
Q Consensus       210 ~~~~~~-~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~l  248 (540)
                      +...|. .+....|.   ..|.+..-|  ...+.|.-++...
T Consensus        79 Vy~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   79 VYPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             eecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccC
Confidence            222221 23344454   458776654  3579999888654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.38  E-value=0.012  Score=46.00  Aligned_cols=82  Identities=20%  Similarity=0.268  Sum_probs=45.2

Q ss_pred             CCCeEEEEEEEeec-----CCCceEEEeCCEeec--CCCceEEEEee------cCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          116 DGDLLVMECVLEAS-----PMPDIIWYQGTKVIE--DTGRIKMSKKS------IGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                      =+++|.|.|.+...     +...+.|.++|+.+-  .+.........      .....+.++|.+.....- .|+|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            47889999999542     223599999887651  11110000000      111123457888775444 89999999


Q ss_pred             EcCCceeEEEEEEEEe
Q psy670          183 CNSIGESNANIALNFQ  198 (540)
Q Consensus       183 ~~~~~~~~~~~~l~v~  198 (540)
                      .....+....+.|...
T Consensus       105 t~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  105 TELSREGETTIELKYR  120 (130)
T ss_dssp             EETTEEEEEEEEEEE-
T ss_pred             EecCCCceEEEEEEEE
Confidence            9888777777777764

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=95.36  E-value=1.6  Score=37.52  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             eEEEEeCCEEeeccCceEE-EEec-CCCeEEEEEEE-eCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCe
Q psy670          238 EVKWFKADKLVKESSKIKI-IVNE-QDDTYEIICEI-TDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPT  313 (540)
Q Consensus       238 ~v~W~~~~~~l~~~~~~~~-~~~~-~~~~~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~  313 (540)
                      .+.|+.||..+........ .... +..+..++|.+ .+...+..-..+|.+.-..... ...+...+         .|.
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~---------~P~   78 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA---------TPS   78 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc---------ccc
Confidence            5889999998764432211 1111 22344556777 3333344458999887433322 22221111         222


Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEc
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKEL  352 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~  352 (540)
                      ....|......+++  ...|.+..-|.  ..+.|+-++...
T Consensus        79 Vy~~P~vsv~F~~g--~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   79 VYPKPRVSVRFEDG--YAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             eecCCEEEEEecCC--EEEEEcceeeCCCeEEEEEECCccC
Confidence            33333222222222  23488877663  578999887764

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA02982 hypothetical protein; Provisional

Probab=95.12  E-value=0.48  Score=39.91  Aligned_cols=122  Identities=14%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             eeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccC-----------------ceEEEEecCCCeEEEEEEEeCCCCC
Q psy670          216 IIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESS-----------------KIKIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      ++....++++.|.|..... .-.+..|+.++.......                 +.....+  -....++|+|.++..+
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s--v~g~~STLTIkk~~i~  110 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS--VSGNSSTFTMKKPDPQ  110 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE--EeccceeEEeccCCcc
Confidence            3445569999999997542 334688988553322200                 0001110  1122358999999999


Q ss_pred             CcEEEEEEEEcCCCCee-eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE
Q psy670          278 DSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE  351 (540)
Q Consensus       278 d~g~y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~  351 (540)
                      ..|-|+|.+....+... ...-+.|+..      ...+.      ...-...-.+.|.+-..-.+-..|.-+|-.
T Consensus       111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~------~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        111 NLGCFTCEAKDAEGKEETCEKCLEIQKE------DILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             cCCceEEEEecCCCchheeheeeeEecc------eEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            99999999998665433 2445555321      00110      111233456789886544333488877653

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.00  E-value=3.2  Score=38.96  Aligned_cols=165  Identities=13%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             eeecCCCCeEEEEEEec--ccC-CCeEEEEeCCEEeec-----------------cCceEEEEe--cCCCeEEEEEEEeC
Q psy670          216 IIPNESGTLIQMKCKCS--AKP-RPEVKWFKADKLVKE-----------------SSKIKIIVN--EQDDTYEIICEITD  273 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~--~~p-~~~v~W~~~~~~l~~-----------------~~~~~~~~~--~~~~~~~~~l~i~~  273 (540)
                      ...+..|..+.|.|..+  |+. -....|+..|-++.+                 ...+.+...  -..+...++|+|..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            34556699999999985  332 345889876544321                 111111111  02334456999999


Q ss_pred             CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeC-CCeEEEEEEEEcc--CCCeEEEEECCE
Q psy670          274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG-GKLVVMECKVKAK--PMPEIVWFHEGK  350 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~-g~~v~l~C~~~~~--p~~~i~W~~~~~  350 (540)
                      +.....|-|.|.+...........-+.|...       ..+      ....+ ...-.+.|-+-..  .+++|.|.-+|-
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV  419 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADH-------VFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGV  419 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccE-------EEE------EEEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence            9999999999999887555555545555331       111      11223 2335567887554  355799998876


Q ss_pred             EccCCCceEEE---EEecCCeeEEEEEEcCCCCCC-CeeEEEEEEcC
Q psy670          351 ELQQTDRISWN---VTLKGDKYHIRLEVKDPRKED-TGLYKCNIKNF  393 (540)
Q Consensus       351 ~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~  393 (540)
                      .........+.   -..-.+...+.+.|.+-...| --.-.|+.--.
T Consensus       420 ~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg  466 (500)
T PHA02914        420 SFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITG  466 (500)
T ss_pred             EecCeecCcccccccccccccceEEEEEecccCccccccceEEEecC
Confidence            54321110000   000111223366666655445 34456765443

>KOG1480|consensus

Probab=94.97  E-value=0.012  Score=59.00  Aligned_cols=77  Identities=12%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             cCCcEEEecCCCeEEEEEEEe-eecCCceEEEecCeecCCCCeE---------EEEEEecCCeEEEEEEeeeeeeeeCCe
Q psy670          459 EVPKVVTISKKKTVVIECKVM-SMYEPSVTWMKEKNTVKEDNKH---------VVHIEQVKDVSMNFELWLGIVEKRGPS  528 (540)
Q Consensus       459 ~~~~~~~~~~g~~~~l~C~v~-g~p~~~v~W~~~~~~l~~~~~~---------~~~~~~~~~g~y~c~~~~~~~~~~~~~  528 (540)
                      ..+.-..|..+..+.+.|... +.|...+.|+|++..+.++.+.         ...+..++.|.|+|++...--.+.-..
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~  213 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDP  213 (909)
T ss_pred             cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccc
Confidence            334445666777888888754 7788899999999888765332         224555789999999996555555556


Q ss_pred             eEEEEEe
Q psy670          529 IKIIYYI  535 (540)
Q Consensus       529 ~~~~~~~  535 (540)
                      ....+|+
T Consensus       214 ~~v~vyv  220 (909)
T KOG1480|consen  214 ATVQVYV  220 (909)
T ss_pred             eEEEEEE
Confidence            6666555

>KOG4597|consensus

Probab=94.81  E-value=0.055  Score=51.24  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE---CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH---EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      +.+...|....+..+++..++|-+.|.+.+.|+|.+   ++..+........  ..---..+..|.|-+....|+|.|+|
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~--e~p~vtstcql~ic~ewq~~a~w~tC  274 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV--ENPVVTSTCQLVICNEWQADAGWYTC  274 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc--CCcceeeeeeEEEcchhhcCCCceee
Confidence            445555666778889999999999999999999975   2222211111000  00111224479999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .+.+..|...+.+.+.+..
T Consensus       275 s~rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  275 SARCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             ccccccceeeccceeeeec
Confidence            9999999988888776653

>PHA03042 CD47-like protein; Provisional

Probab=94.63  E-value=0.18  Score=44.38  Aligned_cols=72  Identities=17%  Similarity=0.305  Sum_probs=48.1

Q ss_pred             eCCCeEEEEEEEEcc-----CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          324 QGGKLVVMECKVKAK-----PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      .-.+++.+.|.++.-     ..-.+.|..++..+-..+.         . ..++|.+.... .-.|+|+|+|.+......
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~---------t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk   97 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN---------T-NTSSLKFNFSK-NLSGNYTCEAINKFNKIK   97 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC---------C-cceEEEEeccc-cCCCceeEEEeecccCcc
Confidence            357889999998752     2346899999987754332         1 22367776533 347999999988765555


Q ss_pred             EEEEEEEE
Q psy670          399 ANLTLNIE  406 (540)
Q Consensus       399 ~~~~l~V~  406 (540)
                      ..+.|+-.
T Consensus        98 ~~IeLk~~  105 (286)
T PHA03042         98 NTIELQYV  105 (286)
T ss_pred             EEEEEEEE
Confidence            55555544

>PHA03042 CD47-like protein; Provisional

Probab=94.47  E-value=0.17  Score=44.55  Aligned_cols=70  Identities=27%  Similarity=0.422  Sum_probs=44.5

Q ss_pred             CCeEEEEEEEeec-----CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670          117 GDLLVMECVLEAS-----PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA  191 (540)
Q Consensus       117 G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (540)
                      ++++.+.|.+...     ..-.+.|..+|+.+-..+...           .++|.+... .+-.|+|+|+|.+...+...
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~   98 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFS-KNLSGNYTCEAINKFNKIKN   98 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEecc-ccCCCceeEEEeecccCccE
Confidence            5789999999432     233699999988763322211           136666543 44589999999876555455


Q ss_pred             EEEEEEe
Q psy670          192 NIALNFQ  198 (540)
Q Consensus       192 ~~~l~v~  198 (540)
                      .+.++..
T Consensus        99 ~IeLk~~  105 (286)
T PHA03042         99 TIELQYV  105 (286)
T ss_pred             EEEEEEE
Confidence            5555433

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.34  E-value=0.068  Score=46.83  Aligned_cols=48  Identities=23%  Similarity=0.164  Sum_probs=35.6

Q ss_pred             ecceeeeeecC-eecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670           22 ANFQMNMYHKG-SLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK   78 (540)
Q Consensus        22 ~~~~~~W~k~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~   78 (540)
                      ..|.++|.-++ ..+......+++  ..       +.|++.+.+.+++|.|+|.+...
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT--~T-------G~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT--ET-------GKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc--cC-------ceEEeeccccccCCceEEEEEEE
Confidence            45889998765 455544444443  33       48999999999999999988654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.33  E-value=0.068  Score=46.82  Aligned_cols=49  Identities=16%  Similarity=0.366  Sum_probs=37.2

Q ss_pred             CCCceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          130 PMPDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       130 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ..|.+.|... |..+.......+...+        .|.+.+...+++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence            4678999985 5566655565554322        79999999999999999987644

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.64  E-value=0.79  Score=32.78  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE-EcCCeeeEEEEEEEE
Q psy670          340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI-KNFHGELNANLTLNI  405 (540)
Q Consensus       340 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V  405 (540)
                      .+.+.|...+........              .+.+.....+|+|.++|.| .+..-.....+.|.|
T Consensus        26 ~~~~~l~~~~~k~~~~~~--------------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETKK--------------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             CEEEEEECSSCEEEEESS--------------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             ChhheeeccCccccccce--------------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            446777765554433222              3455566778999999999 665555555555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03283 envelope glycoprotein E; Provisional

Probab=93.39  E-value=5.1  Score=39.29  Aligned_cols=83  Identities=19%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             EEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCC-CCCCCCC-----------CCccccCCCeEEEE
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGG-KAPRFPK-----------KPTIHQDGDLLVME  123 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~-~~~~~~~-----------~~~~v~~G~~v~l~  123 (540)
                      +.|.|.+++.+++|.|+-..++..+.....+.|+|..+...+.-+.. ..+..+.           ......+|+++.+.
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls  213 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS  213 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence            58999999999999999999987775556666777653322221100 0111111           12245689999997


Q ss_pred             EEEeecC--C---CceEEEe
Q psy670          124 CVLEASP--M---PDIIWYQ  138 (540)
Q Consensus       124 C~~~~~p--~---~~v~W~~  138 (540)
                      -......  .   ..|.|++
T Consensus       214 i~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        214 VHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             EEEeeccCCCCceEEEEEEE
Confidence            7764432  2   2689976

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=93.32  E-value=0.42  Score=34.80  Aligned_cols=75  Identities=16%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             eEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEE
Q psy670          119 LLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN  196 (540)
Q Consensus       119 ~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~  196 (540)
                      .+.-+|.+ .|.|++.|.|.-+   +.............+.....+.+.+-.....|+-..+|.+.+....-...+.|+
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            35668986 7889999999742   111111122222223444556777777888899999999988644444444443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.86  E-value=0.59  Score=43.33  Aligned_cols=66  Identities=12%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             eEEEEEEEEccCCC--eEEEEEC---------C---EEccCCC-------ceEEEEEecC--CeeEEEEEEcCCCCCCCe
Q psy670          328 LVVMECKVKAKPMP--EIVWFHE---------G---KELQQTD-------RISWNVTLKG--DKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       328 ~v~l~C~~~~~p~~--~i~W~~~---------~---~~~~~~~-------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G  384 (540)
                      .++|+|.|.|+-+.  .+.|.++         |   ..+..+.       .+......++  +.+..+..+ .+...+..
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~  294 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN  294 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence            57999999996443  6799999         4   2222211       0111122222  345544444 34556777


Q ss_pred             eEEEEEEcCC
Q psy670          385 LYKCNIKNFH  394 (540)
Q Consensus       385 ~Y~C~a~n~~  394 (540)
                      .|+|.+.+..
T Consensus       295 ~Y~C~V~Hsg  304 (338)
T PHA02865        295 QIVCVVFHST  304 (338)
T ss_pred             CcEEEEEeCC
Confidence            8999998865

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.67  E-value=0.47  Score=34.56  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             cceee-eCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            8 KSYTL-EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~-~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      ..|.+ +|.|+      +.|+|.   ..|......+.....++ .....+.+.+-..+..|.-.-+|.+..........+
T Consensus        25 A~CiSa~GrPp------a~ItW~---t~l~G~~etq~~~~~~G-T~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~   94 (98)
T cd05890          25 ATCVSANGKPP------SVVRWD---TRLKGEAEFQEIRNQNG-TVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSV   94 (98)
T ss_pred             EEEEcCCCcCC------cEeEEE---ccCCCceeeeeeCCCCC-CEEEEEEEEEeECHHHcCCEeEEEEEeccccccccE
Confidence            45984 49998      999998   33322222222222233 444567888889999999999999987644333344


Q ss_pred             EE
Q psy670           87 NL   88 (540)
Q Consensus        87 ~l   88 (540)
                      .|
T Consensus        95 ~L   96 (98)
T cd05890          95 TL   96 (98)
T ss_pred             Ee
Confidence            33

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG4597|consensus

Probab=92.57  E-value=0.17  Score=48.05  Aligned_cols=85  Identities=15%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEe---CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQ---GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ..+..|++..++|-+.|.+.+.|.|.+   ++..+.... -....  .-.-+.+..|.|-+....|+|.|+|.+.+..|.
T Consensus       206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~-nq~~e--~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRP-NQTVE--NPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             hhcccchhhcccccccCCcCceeeeehhhccccceeecC-ccccC--CcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            357889999999999999999999976   332221111 11111  112233558999999999999999999999998


Q ss_pred             eEEEEEEEEec
Q psy670          189 SNANIALNFQG  199 (540)
Q Consensus       189 ~~~~~~l~v~~  199 (540)
                      ....+.+.+..
T Consensus       283 ~~rdv~c~s~~  293 (560)
T KOG4597|consen  283 LRRDVPCSSVK  293 (560)
T ss_pred             eeccceeeeec
Confidence            88888877654

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=92.37  E-value=0.8  Score=33.71  Aligned_cols=63  Identities=10%  Similarity=0.122  Sum_probs=41.4

Q ss_pred             eceeecCCcEEEec--CC--CeEEEEEEEeeecCCceEEEecCeec-CCCCeEEEEEEecCCeEEEEEE
Q psy670          454 VPVIREVPKVVTIS--KK--KTVVIECKVMSMYEPSVTWMKEKNTV-KEDNKHVVHIEQVKDVSMNFEL  517 (540)
Q Consensus       454 ~p~i~~~~~~~~~~--~g--~~~~l~C~v~g~p~~~v~W~~~~~~l-~~~~~~~~~~~~~~~g~y~c~~  517 (540)
                      ++.|..++....+.  .+  +...|.+.+.+. ...+.||.||+.+ .....+.+.......|.|+.++
T Consensus        10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v   77 (89)
T PF06832_consen   10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV   77 (89)
T ss_pred             CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence            56666655443332  22  256666666665 4599999999999 3334455666767899998776

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03282 envelope glycoprotein E; Provisional

Probab=90.92  E-value=6.1  Score=38.09  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCC
Q psy670          164 RLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .|++.|+..+++|.|.|++....
T Consensus       334 dL~F~nAp~saSGLYVfVl~yNG  356 (540)
T PHA03282        334 NLQLRDASEASGGLYVCVVYVNG  356 (540)
T ss_pred             ceEecCCCcccCceEEEEEEECC
Confidence            79999999999999999987543

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.92  E-value=0.92  Score=33.91  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=26.9

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEE
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGES-NANIALNF  197 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v  197 (540)
                      .|.|+.++..|+|.|..++.+..|.. ...+.|.|
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            89999999999999999999988875 45555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.82  E-value=8.7  Score=37.76  Aligned_cols=37  Identities=14%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG  200 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~  200 (540)
                      .|+|.+++.+++|.|+-..+++.+.....+.|.|...
T Consensus       135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~  171 (542)
T PHA03283        135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKP  171 (542)
T ss_pred             eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCC
Confidence            7999999999999999999987775566667777763

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.47  E-value=3  Score=29.84  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             EEEEcCCCCCCCeEEEEEE-EcCCceeEEEEEEEE
Q psy670          164 RLEINNPTKDDGGNYRCNA-CNSIGESNANIALNF  197 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v  197 (540)
                      .+........|+|.+.|.| .+..-.....+.|.|
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4566677889999999999 444444444555444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=90.31  E-value=1.5  Score=32.77  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=25.6

Q ss_pred             EEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       372 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|.|+.++..|+|.|.-++++..|.. ....+.|
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV  104 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV  104 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence            89999999999999999999998876 3344444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=90.27  E-value=0.95  Score=41.99  Aligned_cols=64  Identities=14%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             eEEEEEEecc-cCC-CeEEEEeC---------C---EEeeccCce---------EEEEecCC-CeEEEEEEEeCCCCCCc
Q psy670          224 LIQMKCKCSA-KPR-PEVKWFKA---------D---KLVKESSKI---------KIIVNEQD-DTYEIICEITDPIGPDS  279 (540)
Q Consensus       224 ~~~l~C~~~~-~p~-~~v~W~~~---------~---~~l~~~~~~---------~~~~~~~~-~~~~~~l~i~~~~~~d~  279 (540)
                      .++|+|.|.| +|. ..+.|.++         |   ..+..+...         .+.. +.+ +++.....+ .+...+.
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~p-n~DggTfQ~~~~v-~v~~~~~  293 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKK-DNDKNTFSSTPSV-RVPTDMS  293 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceee-CCCCCeeEEEEEE-EeCCCCC
Confidence            5799999999 454 36899999         3   111111100         0111 123 355554444 3445566


Q ss_pred             EEEEEEEEcC
Q psy670          280 GTYRCNVKNE  289 (540)
Q Consensus       280 g~y~C~~~~~  289 (540)
                      ..|+|++.+.
T Consensus       294 ~~Y~C~V~Hs  303 (338)
T PHA02865        294 NQIVCVVFHS  303 (338)
T ss_pred             CCcEEEEEeC
Confidence            6799998875

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=87.05  E-value=41  Score=34.96  Aligned_cols=232  Identities=13%  Similarity=0.115  Sum_probs=123.9

Q ss_pred             cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC--C----
Q psy670          219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG--E----  292 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~----  292 (540)
                      ...|+.+.|...+.|.....+...-.|..+...          +......+...   +..+|.|.-.+.-...  .    
T Consensus       302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~----------~Y~~~n~~~w~---P~~~G~Y~I~v~VKDk~S~~eyD  368 (667)
T PRK14081        302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDS----------GYIRNNIYTWK---PKIAGKYSITLWVKDISSKGEYE  368 (667)
T ss_pred             eecCceEEEEEEecCCCceEEEEEECCcEEeec----------cccccceEEEe---eCCCceEEEEEEEEcCcCccccc
Confidence            346999999999988555554443344443211          11111123332   3368888776653221  1    


Q ss_pred             eeeeEEEEEeeccCCCCCCCeEE--eCCceEEeeCCCeEEEEEEEEccCCCeEE-E-EECCEEccCCCceEEEEEecCCe
Q psy670          293 SNANLNLNIEAEAEPEGDPPTFI--EKPKIRSEQGGKLVVMECKVKAKPMPEIV-W-FHEGKELQQTDRISWNVTLKGDK  368 (540)
Q Consensus       293 ~~~~~~l~v~~~~~~~~~~p~~~--~~~~~~~~~~g~~v~l~C~~~~~p~~~i~-W-~~~~~~~~~~~~~~~~~~~~~~~  368 (540)
                      ....+.+.+...+..   |..+.  ..+.......|+.+.+.|.+.+.-...+. | .++|..+....-.      ... 
T Consensus       369 ~~~~v~f~i~~~~~~---p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~------~~~-  438 (667)
T PRK14081        369 DKSSIDYTIEEKSKE---PIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG------KNN-  438 (667)
T ss_pred             ceEEEEEEEcccCCC---CeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc------ccc-
Confidence            233344554432211   11221  12223446679999999999876554443 3 3466655432110      011 


Q ss_pred             eEEEEEEcCCCCCCCeeEEEEEE--cCCee----eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcc
Q psy670          369 YHIRLEVKDPRKEDTGLYKCNIK--NFHGE----LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ  442 (540)
Q Consensus       369 ~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~----~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (540)
                         .+.+   .+..+|.|+-.+.  +....    ....+.+.|..                                   
T Consensus       439 ---~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e-----------------------------------  477 (667)
T PRK14081        439 ---WVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE-----------------------------------  477 (667)
T ss_pred             ---EEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec-----------------------------------
Confidence               3333   3467899997654  33221    23455555543                                   


Q ss_pred             cccceeeeeeeece-ee--cCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC---eEEEEEEecCCeEEE
Q psy670          443 FKKYSVLTLSVVPV-IR--EVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN---KHVVHIEQVKDVSMN  514 (540)
Q Consensus       443 ~~~~~~~~~~~~p~-i~--~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~---~~~~~~~~~~~g~y~  514 (540)
                                ..|. +.  ..+.......|+.+++.|.++|.-..  .+.-+.||.-+...+   .......+.-.|.|+
T Consensus       478 ----------~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~~~~ysf~P~~~GkY~  547 (667)
T PRK14081        478 ----------YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIKNKKYKFIPKCSGKYT  547 (667)
T ss_pred             ----------cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccccceEEEeecCCceEE
Confidence                      1333 22  12323346679999999999986555  344455676553321   223355678899999


Q ss_pred             EEEeeeeeee
Q psy670          515 FELWLGIVEK  524 (540)
Q Consensus       515 c~~~~~~~~~  524 (540)
                      ..+...+...
T Consensus       548 I~V~aKn~~s  557 (667)
T PRK14081        548 IEVLAKNIKS  557 (667)
T ss_pred             EEEEEccccc
Confidence            9888766543

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=86.84  E-value=1.8  Score=42.58  Aligned_cols=83  Identities=25%  Similarity=0.444  Sum_probs=12.3

Q ss_pred             EEEEEcccccCCCeeEEEEEEccCcce-eeeEEEEEeecCCccccCCCCCCCCCC-----------CCccccCCCeEEEE
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPK-----------KPTIHQDGDLLVME  123 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~v~~G~~v~l~  123 (540)
                      +.|.|.+++.+|+|.|+-...+..+.. ...+.|.|......+..+....+..+.           ......+|+++.|.
T Consensus        89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~  168 (439)
T PF02480_consen   89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS  168 (439)
T ss_dssp             ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred             CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence            479999999999999999998766544 344556665533221111110011111           11235689999988


Q ss_pred             EEEee--cC-CC---ceEEEe
Q psy670          124 CVLEA--SP-MP---DIIWYQ  138 (540)
Q Consensus       124 C~~~~--~p-~~---~v~W~~  138 (540)
                      -.+..  .. .+   .|.|++
T Consensus       169 v~l~~~~~d~~~f~~~i~W~~  189 (439)
T PF02480_consen  169 VHLQSEAHDDPPFSLEIDWYY  189 (439)
T ss_dssp             -EEEEEESSS--EEEEEEEEE
T ss_pred             EEEEeccCCCCCeeEEEEEEE
Confidence            87733  23 22   699986

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=86.09  E-value=3.8  Score=30.07  Aligned_cols=66  Identities=14%  Similarity=0.281  Sum_probs=41.4

Q ss_pred             CccccCCCeEEEEEEEeec-----CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS-----PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ..++..|+.++..|.+...     ....+.|..++..++......+.       ...+++++.+.....+-.|-|...
T Consensus        12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in-------~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN-------DTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES-------TTEEEEEESS--SSEEEEEEEEEC
T ss_pred             CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC-------CeEEEEEEccCCCCCceEEEEEEc
Confidence            3467899999999999422     34479999998866554332222       112578888877766667777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=84.38  E-value=7.6  Score=28.46  Aligned_cols=64  Identities=11%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             ecCCCCeEEEEEEecc-----cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          218 PNESGTLIQMKCKCSA-----KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       218 ~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      .+..|+.++..|....     ..+..+.|..++..++......+    ....  +.+++.+........|-|...
T Consensus        14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i----n~~~--SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI----NDTV--SSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE----STTE--EEEEESS--SSEEEEEEEEEC
T ss_pred             EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee----CCeE--EEEEEccCCCCCceEEEEEEc
Confidence            4567999999999953     24557999999986665543322    1121  467777766666566666543

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03281 envelope glycoprotein E; Provisional

Probab=83.35  E-value=39  Score=33.54  Aligned_cols=80  Identities=18%  Similarity=0.323  Sum_probs=49.7

Q ss_pred             EEEEEcccccCCCeeEEEEEEccCccee-eeEEEEEeecCCccccCCCCCCCCCC-----------CCccccCCCeEEEE
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPK-----------KPTIHQDGDLLVME  123 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~v~~G~~v~l~  123 (540)
                      +.|+|.+++.+++|.|+-..+...|... +.+.|+|...+ ...++.  ++..+.           ......+|+++.+.
T Consensus       298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~-~~rip~--p~Vtpk~hga~F~vknYhShVF~pGDTFsl~  374 (642)
T PHA03281        298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE-ENHIDL--PAVTPKPKGAEFHMWHYHSHVFSVGDTFSLA  374 (642)
T ss_pred             CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc-ccCCCC--CCccccccCceEEEeccceeEecCCCeeEEE
Confidence            5899999999999999998886656443 35556665433 111111  111111           12245689999888


Q ss_pred             EEEeec--CCC---ceEEEe
Q psy670          124 CVLEAS--PMP---DIIWYQ  138 (540)
Q Consensus       124 C~~~~~--p~~---~v~W~~  138 (540)
                      -.....  ..+   .+.|++
T Consensus       375 v~L~s~ihD~pFsleI~Wyy  394 (642)
T PHA03281        375 MHLQYKIHDAPFDLLLEWLY  394 (642)
T ss_pred             EEEeeeccCCCceeEEEEEE
Confidence            887433  222   699976

>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []

Probab=82.72  E-value=2.5  Score=29.20  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             EecCCCeEEEEEEEeeecCCceEEEecC-eecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670          465 TISKKKTVVIECKVMSMYEPSVTWMKEK-NTVKEDNKHVVHIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       465 ~~~~g~~~~l~C~v~g~p~~~v~W~~~~-~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~  522 (540)
                      .+..|+.++|...........+.|..++ .....+.  .+.......|.|..+|++.+-
T Consensus         7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~--~~t~ty~~~G~y~V~ltv~n~   63 (69)
T PF00801_consen    7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGS--SVTHTYSSPGTYTVTLTVTNG   63 (69)
T ss_dssp             CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSS--EEEEEESSSEEEEEEEEEEET
T ss_pred             EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCC--CEEEEcCCCeEEEEEEEEEEC
Confidence            3557888999987733334489999988 3333333  345566789999999987653

Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.

>PHA03052 Hypothetical protein; Provisional

Probab=82.59  E-value=3.2  Score=27.97  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=27.4

Q ss_pred             cEEEecCCCeEEEEEEEee-ec--CCceEEEecCeecC
Q psy670          462 KVVTISKKKTVVIECKVMS-MY--EPSVTWMKEKNTVK  496 (540)
Q Consensus       462 ~~~~~~~g~~~~l~C~v~g-~p--~~~v~W~~~~~~l~  496 (540)
                      ....+..|..++|.|.|.- .+  .+.|.|.-|+..+.
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            4567778999999999983 22  34788999999883

>PHA03189 UL14 tegument protein; Provisional

Probab=82.48  E-value=17  Score=33.07  Aligned_cols=80  Identities=11%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CceeecCCCCeEEEEEEeccc--CCCeEE-----EEe----------CCEEeeccCceE-----EEEecCCCeEEEEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAK--PRPEVK-----WFK----------ADKLVKESSKIK-----IIVNEQDDTYEIICEI  271 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~-----W~~----------~~~~l~~~~~~~-----~~~~~~~~~~~~~l~i  271 (540)
                      +....+..|+.+++.|.+...  |...|.     |.-          +|+.+.+.-...     ....+.+.....+|++
T Consensus        59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF  138 (348)
T PHA03189         59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF  138 (348)
T ss_pred             CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence            334456689999999999653  333222     211          122222211111     1111122222334444


Q ss_pred             eCCCCCCcEEEEEEEEcCCCCee
Q psy670          272 TDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                       ++..+-+|.|.|+..|......
T Consensus       139 -~v~t~taG~Y~CvLrN~tHglv  160 (348)
T PHA03189        139 -RVSTSTAGMYECVLRNETHGLV  160 (348)
T ss_pred             -EEEecccceEEEEeccccceee
Confidence             4556789999999999755443

>PHA03052 Hypothetical protein; Provisional

Probab=80.80  E-value=4.9  Score=27.14  Aligned_cols=36  Identities=17%  Similarity=0.387  Sum_probs=27.4

Q ss_pred             ceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCEEccC
Q psy670          319 KIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGKELQQ  354 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~~~~~  354 (540)
                      ....+..|..++|.|.+.-.   ..+.+.|.-|+..+..
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            45667889999999999732   2456899989888744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	540
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		6e-18
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-13
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		8e-12
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-13
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-12
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-12
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-12
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-11
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-11
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-11
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-11
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-10
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-10
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		4e-10
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-09
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-09
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		6e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		7e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		8e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		2e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-08
3kld_A	384	Ptprg Cntn4 Complex Length = 384		5e-08
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-08
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-07
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		5e-08
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		5e-08
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-08
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		9e-08
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-07
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-07
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-07
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		1e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		1e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		6e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-06
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		5e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		5e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-05
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		1e-05
3qp3_A	103	Crystal Structure Of Titin Domain M4, Tetragonal Fo		1e-05
1fhg_A	154	High Resolution Refinement Of Telokin Length = 154		2e-05
1tlk_A	154	X-Ray Structure Determination Of Telokin, The C-Ter		2e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		8e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		8e-05
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		6e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-05
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		1e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		7e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		2e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		4e-04
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		2e-04
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		3e-04
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-04
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		4e-04
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		4e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		4e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		5e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		8e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 42/354 (11%)
Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
           A LT+  V K D+G+Y   A N  G+ S +  L   E            PRF KK  P+ 
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-----------PPRFIKKLEPSR 301
Query: 113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNPT 171
           I +  +    EC +  SP   ++WY+    I+++ + +MS  +S+        LE+ N +
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNLS 355
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
            +D G+Y C A N+ G ++++ +L  +         P F +KP  +    G  + ++C+ 
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECEL 408
Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
              P  +V W K  + ++   K KI+     + +     I +    D G Y+C   N+ G
Sbjct: 409 QGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDVG 464
Query: 292 XXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
                              PP F++K    S   G+ V ++  ++      + WF +  E
Sbjct: 465 SDTCVGSITLKA-------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGE 517
Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +    R S N+ +   +    L+       + G Y C IKN  G      TL++
Sbjct: 518 IV---RESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 34/241 (14%)
Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
           A LT+  V K D+G+Y   A N  G+ S +  L   E            PRF KK  P+ 
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-----------PPRFIKKLEPSR 109
Query: 113 -IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNP 170
            + QD +    EC +  SP   ++WY+    I+++ + +MS  +S+        LE+ N 
Sbjct: 110 IVKQD-EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNL 162
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
           + +D G+Y C A N+ G ++++ +L  +         P F +KP  +    G  + ++C+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECE 215
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
               P  +V W K  + ++   K KI+     + +     I +    D G Y+C   N+ 
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 291 G 291
           G
Sbjct: 272 G 272

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 35/298 (11%)
Query: 101 GGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           G  AP F     +  D   G+    +C +  +    I W +  + I   G  KM+     
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---P 214
               +L++     TK D G Y C A N  G+ + +  L  Q         P FI+K    
Sbjct: 61  ATLTVLKV-----TKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPS 108
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
           RI+  +  T  + +CK    P  +V W+K +  ++ESSK ++   E       + E+ + 
Sbjct: 109 RIVKQDEHT--RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNL 162
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
              DSG Y C   N  G                  +PP F +KP       G  V +EC+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVK-------EPPVFRKKPHPVETLKGADVHLECE 215
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
           ++  P  ++ W  + +EL+   +      +  + +   + + +    D G Y+C   N
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYK----IMSENFLTSIHILNVDSADIGEYQCKASN 269

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 137/348 (39%), Gaps = 47/348 (13%)
Query: 69  GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK---PTIHQDGDLLVMECV 125
           GEY+  A+NK G   S           ++++   K+P +PK+   P + Q+G  L ++C 
Sbjct: 90  GEYQCFARNKFGTALSN----------RIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCN 139
Query: 126 LEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN 184
                P P I W   +  +E   + K   +    D Y   + + +   D   N R +  +
Sbjct: 140 PPPGLPSPVIFWMSSS--MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197
Query: 185 SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE---SGTLIQMKCKCSAKPRPEVKW 241
           +I + N    L        A   PSF+       ++    G  + ++C  S  P P++ W
Sbjct: 198 TIQQKNP-FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256
Query: 242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXX 300
           +K    L  + +K         + +     IT+    DSG Y C   N+ G         
Sbjct: 257 YKKGGDLPSDKAKF--------ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Query: 301 XXXXXXPEGDPPTFIEKPK---IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR 357
                      P ++++PK   +   + G+LV   C+    P P + W   G+ LQ    
Sbjct: 309 VKAA-------PYWLDEPKNLILAPGEDGRLV---CRANGNPKPTVQWMVNGEPLQSAPP 358
Query: 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
            + N  + GD    R    D +     +Y+CN  N HG L AN  +++
Sbjct: 359 -NPNREVAGDTIIFR----DTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKK--PT- 112
           A LT+  V K D+G+Y   A N  G+ S +  L        ++ P    PRF KK  P+ 
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-------VQAP----PRFIKKLEPSR 109
Query: 113 -IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS-KKSIGKDTYLLRLEINNP 170
            + QD +    EC +  SP   ++WY+    I+++ + +MS  +S+        LE+ N 
Sbjct: 110 IVKQD-EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA------VLEMYNL 162
Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
           + +D G+Y C A N+ G ++++ +L  +         P F +KP  +    G  + ++C+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECE 215
Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
               P  +V W K  + ++   K KI+     + +     I +    D G Y+C   N+ 
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 291 G 291
           G
Sbjct: 272 G 272

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 35/298 (11%)
Query: 101 GGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           G  AP F     +  D   G+    +C +  +    I W +  + I   G  KM+     
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---P 214
               +L++     TK D G Y C A N  G+ + +  L  Q         P FI+K    
Sbjct: 61  ATLTVLKV-----TKGDAGQYTCYASNVAGKDSCSAQLGVQA-------PPRFIKKLEPS 108
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
           RI+  +  T  + +CK    P  +V W+K +  ++ESSK ++   E       + E+ + 
Sbjct: 109 RIVKQDEHT--RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNL 162
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
              DSG Y C   N  G                  +PP F +KP       G  V +EC+
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVK-------EPPVFRKKPHPVETLKGADVHLECE 215
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
           ++  P  ++ W  + +EL+   +      +  + +   + + +    D G Y+C   N
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYK----IMSENFLTSIHILNVDSADIGEYQCKASN 269

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           +G AP   ++ + +  + G   Q+ C+   +P P++KW++  K + +S K K+  + +  
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
           T  ++ E  +    D G Y C   NE G               P+   P +  K K    
Sbjct: 64  TLTVMTEEQE----DEGVYTCIATNEVG--EVETSSKLLLQATPQFH-PGYPLKEKYYGA 116
Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD-PRKED 382
            G  L +    +  +P+P + WFH  K LQ ++    N+T++  +++  L +K+  RK  
Sbjct: 117 VGSTLRLHVMYI-GRPVPAMTWFHGQKLLQNSE----NITIENTEHYTHLVMKNVQRKTH 171
Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
            G YK  + N  G ++A L + I+
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 31/247 (12%)
Query: 50  SRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG-GKAPR 106
           SR+  L    L I  +Q  DSG Y+  A+N     +ST   N +E    L  PG  +   
Sbjct: 169 SRVVVLPSGALQISRLQPGDSGVYRCSARNP----ASTRTGNEAEVR-ILSDPGLHRQLY 223
Query: 107 FPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
           F ++P+  I  +G   V+EC +   P P   W +G +VI+    ++  K S+   + LL 
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ----LRSKKYSLLGGSNLL- 278
Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
             I+N T DD G Y C     +   N NI+ +    E      P F+  P  +       
Sbjct: 279 --ISNVTDDDSGTYTC----VVTYKNENISAS---AELTVLVPPWFLNHPSNLYAYESMD 329
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
           I+ +C  S KP P V W K   +V  S   +I+             I   +  D G Y+C
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN-------LRILGVVKSDEGFYQC 382
Query: 285 NVKNEFG 291
             +NE G
Sbjct: 383 VAENEAG 389

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 112/293 (38%), Gaps = 37/293 (12%)
Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           GD ++++C +   PMP I W +     +D   I    + +   +  L++    P   D G
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQ---QDLNPIPGDSRVVVLPSGALQISRLQP--GDSG 190
Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
            YRC+A N       N A      + G      F+++P  +    G    ++C  S  P 
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV--KNEFGXXX 294
           P   W + +++++  SK   ++   +    +I  +TD    DSGTY C V  KNE     
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSN---LLISNVTDD---DSGTYTCVVTYKNENISAS 304
Query: 295 XXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354
                           PP F+  P          +  EC V  KP+P + W   G     
Sbjct: 305 AELTVLV---------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG----- 350
Query: 355 TDRISWNVTLKGDKYHI----RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
                 +V +  D + I     L +    K D G Y+C  +N  G   ++  L
Sbjct: 351 ------DVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 138/368 (37%), Gaps = 63/368 (17%)
Query: 55  LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
           ++ L I +V  +D G YK IAK+K G          +E   KL V G    R  +K  I 
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVG---------VAEHSAKLNVYGLPYIRQMEKKAIV 539
Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
             G+ L++ C +   P+  I+W +  + +     I   +K     T ++    N     D
Sbjct: 540 A-GETLIVTCPVAGYPIDSIVWERDNRALP----INRKQKVFPNGTLIIE---NVERNSD 591
Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII-------PNESGTLIQM 227
              Y C A N  G S A  +L  Q            +  PRII       P + G  + +
Sbjct: 592 QATYTCVAKNQEGYS-ARGSLEVQ-----------VMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 228 KCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
            C       P  + W    + + E      I   +      +  I       +G + C+ 
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLG---ITTSRVGRRGSVLTIEAVEASHAGNFTCHA 696
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
           +N  G                   PP +I +P  ++   G    +ECK    P P++ W 
Sbjct: 697 RNLAGHQQFTTPLNVYV-------PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 347 H-------EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LN 398
                   E K+L+++D    N+ ++    H    V + +K + G Y C   N  G  L+
Sbjct: 750 KAVGDTPGEYKDLKKSD----NIRVEEGTLH----VDNIQKTNEGYYLCEAINGIGSGLS 801
Query: 399 ANLTLNIE 406
           A + ++++
Sbjct: 802 AVIMISVQ 809

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 115/314 (36%), Gaps = 35/314 (11%)
Query: 120 LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR 179
           + + C  +  P+P   WY   K IE T R +    +         L I +   +D G Y 
Sbjct: 266 MALLCPAQGYPVPVFRWY---KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 322
Query: 180 CNACNSIGESNANIALNFQGGENGAGFAP-SFIEKPRIIPNESGTLIQMKCKCSAKPRPE 238
           C   NS+G  +    L           AP S    P     + G      C+ +  P   
Sbjct: 323 CVVNNSVGGESVETVLTVT--------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 374
Query: 239 VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXX 298
           V W K  K +  S  +  I + + +              D G Y+C V+N+         
Sbjct: 375 VSWMKDGKAIGHSESVLRIESVKKE--------------DKGMYQCFVRND----RESAE 416
Query: 299 XXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR- 357
                      DPP   +  +  + + G  V ++C     P PEI W  +GK++   DR 
Sbjct: 417 ASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
Query: 358 -ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVR 416
            +   VT+ GD     L +      D GLYKC  K+  G    +  LN+  + +I  R  
Sbjct: 477 QVGQYVTVNGDVVSY-LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI--RQM 533
Query: 417 SNKGIVGKMGLVKT 430
             K IV    L+ T
Sbjct: 534 EKKAIVAGETLIVT 547

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 133/366 (36%), Gaps = 64/366 (17%)
Query: 58  LTIKNVQKS-DSGEYKVIAKNKNGEG-SSTVNLNFS-------EEDGKLKVPGGKAPRFP 108
           L I N  K+ D+G Y+ +A N  G   S    L F        EE   +K   G     P
Sbjct: 62  LVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLP 121
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
             P  H  G  L    +L   P            I   GR  +S+ +   + Y+ R   +
Sbjct: 122 CNPPAHYPG--LSYRWLLNEFP----------NFIPTDGRHFVSQTT--GNLYIARTNAS 167
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQ----GGENGAGFAPSFIEKPRIIPNES--- 221
                D GNY C A + +  S  ++   F       E+   FAPS   +    P E+   
Sbjct: 168 -----DLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKAR---FPAETYAL 219
Query: 222 -GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G  + ++C     P P +KW K D            ++ Q  T E   +I      D G
Sbjct: 220 VGQQVTLECFAFGNPVPRIKWRKVDG----------SLSPQWTTAEPTLQIPSVSFEDEG 269
Query: 281 TYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
           TY C  +N  G                    P +++         G  +   C    KP 
Sbjct: 270 TYECEAENSKGRDTVQGRIIVQAQ-------PEWLKVISDTEADIGSNLRWGCAAAGKPR 322
Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
           P + W   G+ L   +R+     L GD    +L +     ED+G+Y+C  +N HG + A+
Sbjct: 323 PTVRWLRNGEPLASQNRVE---VLAGDLRFSKLSL-----EDSGMYQCVAENKHGTIYAS 374
Query: 401 LTLNIE 406
             L ++
Sbjct: 375 AELAVQ 380

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 137/363 (37%), Gaps = 58/363 (15%)
Query: 58  LTIKN-VQKSDSGEYKVIAKNKNGEG-SSTVNLNF-------SEEDGKLKVPGGKAPRFP 108
           L I N V+  D+G Y+ +A N  G   S   +L F       +EE   +K+  G    F 
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
             P  H     L    +L  +  P+ I   G + +  T            + Y+ + E +
Sbjct: 123 CSPPPHYPA--LSYRWLL--NEFPNFIPADGRRFVSQTT----------GNLYIAKTEAS 168
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQ----GGENGAGFAPSFIEK-PRIIPNESGT 223
                D GNY C A + I     ++   F       E+   +APS   K P      +G 
Sbjct: 169 -----DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223
Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
           ++ ++C     P P++KW K D    ++SK          + E +  I +    D GTY 
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDG--SQTSKWL--------SSEPLLHIQNVDFEDEGTYE 273
Query: 284 CNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343
           C  +N  G                    P +++         G  +   C    KP P +
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQ-------PDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 344 VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
            W  +G+ L   +RI     + G +      V     ED+G+Y+C  +N HG + A+  L
Sbjct: 327 RWLRDGQPLASQNRIE----VSGGELRFSKLVL----EDSGMYQCVAENKHGTVYASAEL 378
Query: 404 NIE 406
            ++
Sbjct: 379 TVQ 381

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP+F +  + +    G+    +   S  P PEV WF+  +++  S+   + ++  D   +
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 267 I-ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
           + I  +T     +SG Y     N  G                E  PP F+++ +  + + 
Sbjct: 65  LTIPAVTKA---NSGRYSLKATNGSGQATSTAELLVKA----ETAPPNFVQRLQSMTVRQ 117
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V ++ +V   P P + ++ +G E+Q +  + + ++ +GD Y + +    P  ED+G 
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYP--EDSGT 173
Query: 386 YKCNIKNFHGELNANLTLNIE 406
           Y  N  N  G   +   L ++
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP+F +  + +    G+    +   S  P PEV WF+  +++  S+   + ++  D   +
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 267 I-ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQG 325
           + I  +T     +SG Y     N  G                E  PP F+++ +  + + 
Sbjct: 65  LTIPAVTKA---NSGRYSLKATNGSGQATSTAELLVKA----ETAPPNFVQRLQSMTVRQ 117
Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V ++ +V   P P + ++ +G E+Q +  + + ++ +GD Y + +    P  ED+G 
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYP--EDSGT 173
Query: 386 YKCNIKNFHGELNANLTLNIE 406
           Y  N  N  G   +   L ++
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 140/365 (38%), Gaps = 43/365 (11%)
Query: 42  SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
           ++ L +D+  L +L        Q SD G Y+  A+   G  SS V ++F     K  +  
Sbjct: 54  NAALRKDEGSLVFL------RPQASDEGHYQCFAETPAGVASSRV-ISFR----KTYLIA 102
Query: 102 GKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSI--GK 158
             A    K P    +G    ++CVL  A P P I W +     +    +    + I  G 
Sbjct: 103 SPAKTHEKTPI---EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP 159
Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQG-GENGAGF----APSFIE 212
           D  L    +      D   Y C A N+ + E    +    +G  ++ +G+     P ++ 
Sbjct: 160 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVS 219
Query: 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
           K  +   ++G +  + C   + P     +FK  K V  + + +I  + +     ++ + T
Sbjct: 220 KDMMA--KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 273 DPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKP-KIRSEQGGKLVVM 331
            P   D G Y C V N  G                    P + +KP K+   + G+ V +
Sbjct: 278 LP--EDEGVYTCEVDNGVGKPQKHSLKLTVVSA------PKYEQKPEKVIVVKQGQDVTI 329
Query: 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
            CKV   P P +VW H  K L         VT  G      L +K  +  D G Y C   
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPLSGG---RATVTDSG------LVIKGVKNGDKGYYGCRAT 380
Query: 392 NFHGE 396
           N HG+
Sbjct: 381 NEHGD 385

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P+ ++KP  +       I + C     P P  +W+K   +   + K  +++N++      
Sbjct: 215 PALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKF--IEGTTRKQAVVLNDRVKQVSG 270
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGK 327
              I D +  DSG Y C V N  G                + DPPT       ++   G+
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGR 323
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
             V  C+    P+  + W  +GK +  ++ +              L ++  +KED G+Y+
Sbjct: 324 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQ 369
Query: 388 CNIKNFHGELNANLTLNI 405
           C ++N      A+  L +
Sbjct: 370 CFVRNDRESAEASAELKL 387

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P+ ++KP  +       I + C     P P  +W+K   +   + K  +++N++      
Sbjct: 221 PALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKF--IEGTTRKQAVVLNDRVKQVSG 276
Query: 268 ICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGK 327
              I D +  DSG Y C V N  G                + DPPT       ++   G+
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGR 329
Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
             V  C+    P+  + W  +GK +  ++ +              L ++  +KED G+Y+
Sbjct: 330 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQ 375
Query: 388 CNIKNFHGELNANLTLNI 405
           C ++N      A+  L +
Sbjct: 376 CFVRNDRESAEASAELKL 393

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
           E G  +   C+ S  P P + WF+  KL++E+ K  +  +  + T      + + I  D 
Sbjct: 17  ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT------VRNIINSDG 70
Query: 280 GTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
           G Y C   N+ G                    P  I+     + + G++ ++ C  + +P
Sbjct: 71  GPYVCRATNKAGEDEKQAFLQVFVQ-------PHIIQLKNETTYENGQVTLV-CDAEGEP 122
Query: 340 MPEIVWFH--EGKELQQTDR-ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
           +PEI W    +G    + D+ +   + +KG      L +KD +  D+G Y C   +  G 
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Query: 397 LNANLTLNIE 406
              ++ L+IE
Sbjct: 183 HQKSMYLDIE 192

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
           +K + I  E  +   + C   + P P  +W+K   +   + K  +++N++         I
Sbjct: 220 DKHQFIDVELASSYSLLCMAQSYPTPSFRWYKF--IEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 272 TDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVM 331
            D +  DSG Y C V N  G                + DPPT       ++   G+  V 
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVF 330
Query: 332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK 391
            C+    P+  + W  +GK +  ++ +              L ++  +KED G+Y+C ++
Sbjct: 331 TCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDKGMYQCFVR 376
Query: 392 NFHGELNANLTLNI 405
           N      A+  L +
Sbjct: 377 NDRESAEASAELKL 390

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 8/194 (4%)
Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           G+   P F++ P      SG +    C+ + +P+P + W K  K V  S + ++I  E D
Sbjct: 3   GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVI--EFD 59
Query: 263 DTYEIICEITD-PIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIR 321
           D    +  I    +  D   Y C   N  G                    PT    P+++
Sbjct: 60  DGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK 119
Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
             + G+   M C     P PEI WF   K+    D  + N  +K  +    L+++   + 
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWF---KDFLPVDPAASNGRIKQLRSGA-LQIESSEES 175
Query: 382 DTGLYKCNIKNFHG 395
           D G Y+C   N  G
Sbjct: 176 DQGKYECVATNSAG 189

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDKY 369
           P F++ P+ ++   G +    C+   +P P I W  +GK++  Q+ + I ++     D  
Sbjct: 8   PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-----DGA 62
Query: 370 HIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNI 405
              L ++  R + D  +Y+C   N  GE+N +  L++
Sbjct: 63  GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 104/272 (38%), Gaps = 42/272 (15%)
Query: 134 IIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN- 190
           I WY  QG K+I  T R+ + K+ +       RL I N   +D G YRC A ++ G++  
Sbjct: 35  IDWYNPQGEKII-STQRVVVQKEGVRS-----RLTIYNANIEDAGIYRCQATDAKGQTQE 88
Query: 191 ANIALNFQGGENGAGFAPSFIEKPRIIPNE--SGTLIQMKCKCSAKPRPEVKWFKADKLV 248
           A + L                 +  + P E   G   ++ C+ S+ P P V W   ++ V
Sbjct: 89  ATVVLEIY---------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 139
Query: 249 KESSKIKIIVNEQDDTYEIICEITDPIG----PDSGTYRCNVKNEFGXXXXXXXXXXXXX 304
              S         D+ + ++      I      D G YRC  + E               
Sbjct: 140 TTIS---------DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 190
Query: 305 XXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
             P    P   +K    + + G+ +   C+    P P I WF  GK +++ ++      L
Sbjct: 191 VPPAISMP---QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK----YIL 243
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
           KG   +  L V++    D G Y C   N  GE
Sbjct: 244 KGS--NTELTVRNIINSDGGPYVCRATNKAGE 273

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 27/196 (13%)
Query: 104 APRFPKKPTIH---QDGDLLVME-----CVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
           A + PK P I    +  D LV E     C +E+ P P+I W +  K++      + S + 
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN-KILIKLFDTRYSIRE 59
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
            G+   +L +E       D G Y C A N +G +  +       G       P     P 
Sbjct: 60  NGQLLTILSVE-----DSDDGIYCCTANNGVGGAVESC------GALQVKMKPKITRPPI 108
Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
            +    G    + C     P+P V W K D  ++E+S+I ++ +     + +  E     
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE----- 163
Query: 276 GPDSGTYRCNVKNEFG 291
             D+G YRC  KN  G
Sbjct: 164 --DAGQYRCVAKNSLG 177

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 229 CKCSAKPRPEVKWFKADKLVKE-SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
           C   + P+PE+ W +   L+K   ++  I  N Q  T   I  + D    D G Y C   
Sbjct: 29  CAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT---ILSVEDS---DDGIYCCTAN 82
Query: 288 NEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
           N  G                   PP       ++  +G K  V+ C     P P + W  
Sbjct: 83  NGVGGAVESCGALQVKMKPKITRPPI-----NVKIIEGLK-AVLPCTTMGNPKPSVSWIK 136
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT-LNIE 406
               L++  RI+  V   G      L + + +KED G Y+C  KN  G   + L  L +E
Sbjct: 137 GDSALRENSRIA--VLESGS-----LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Query: 407 M 407
           +
Sbjct: 190 V 190

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 21/210 (10%)
Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G   A   P  I KP+      G +    C     P P + W K  K V   ++ +  V 
Sbjct: 1   GPGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-GTQSRYTVL 59
Query: 260 EQDDTYEIICEITDPI--GPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDP-----P 312
           EQ     I+    +P+  G D   Y C  +N  G                EGD      P
Sbjct: 60  EQPGGISIL--RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY----EGDKTPAGFP 113
Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
              + P  R  + G  V+M CK    P P I W    K   + D  +   +LK D +   
Sbjct: 114 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI---KNQTKVDMSNPRYSLK-DGF--- 166
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
           L++++ R+ED G Y+C  +N  G  ++  T
Sbjct: 167 LQIENSREEDQGKYECVAENSMGTEHSKAT 196

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 58  LTIKNVQKSDSGEYKVIAKNKN------GEGSSTVNLN---FSEEDGKLKVPGGKAPRFP 108
           L I  V+KSD G Y  +  N        G  +  +  N     E + K++V      +FP
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFP 212
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
           +     + G  + +EC    +P+P I+W +     +   R     KS G       LEI 
Sbjct: 213 ET-VPAEKGTTVKLECFALGNPVPTILWRRADG--KPIARKARRHKSNGI------LEIP 263
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK 228
           N  ++D G+Y C A NS G++ A   L F    N        I    +   ES   +  +
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIINDIHVAMEES---VFWE 316
Query: 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
           CK + +P+P  +W K    +    +I+I   EQ      I  ++     D+G Y+C  +N
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQI---EQGTLNITIVNLS-----DAGMYQCVAEN 368
Query: 289 EFG 291
           + G
Sbjct: 369 KHG 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 139/364 (38%), Gaps = 62/364 (17%)
Query: 58  LTIKNVQKS-DSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-Q 115
           L I N  K+ D+G Y+ IA N  G             + KL+    +  +   + T+  +
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR 115
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---YLLRLEINNPTK 172
            G  +V+ C     P P         +  +    + +++ + ++T   Y+ ++E     K
Sbjct: 116 RGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE-----K 166
Query: 173 DDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMK 228
            D GNY C   N++           L  +       + P   ++ P  +P E GT ++++
Sbjct: 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 226
Query: 229 CKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
           C     P P + W +AD   + +++ + K            I EI +    D+G+Y C  
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHK---------SNGILEIPNFQQEDAGSYECVA 277
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
           +N  G                    P +++          + V  ECK   +P P   W 
Sbjct: 278 ENSRGKNVAKGQLTFYAQ-------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330
Query: 347 HEGKELQQTDRI-----SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
             G  L   DRI     + N+T+      + L        D G+Y+C  +N HG + ++ 
Sbjct: 331 KNGDPLLTRDRIQIEQGTLNITI------VNL-------SDAGMYQCVAENKHGVIFSSA 377
Query: 402 TLNI 405
            L++
Sbjct: 378 ELSV 381

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 58  LTIKNVQKSDSGEYKVIAKNKN------GEGSSTVNLN---FSEEDGKLKVPGGKAPRFP 108
           L I  V+KSD G Y  +  N        G  +  +  N     E + K++V      +FP
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV------QFP 211
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN 168
           +     + G  + +EC    +P+P I+W +     +   R     KS G       LEI 
Sbjct: 212 ET-VPAEKGTTVKLECFALGNPVPTILWRRADG--KPIARKARRHKSNGI------LEIP 262
Query: 169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK 228
           N  ++D G+Y C A NS G++ A   L F    N        I    +   ES   +  +
Sbjct: 263 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV----QIINDIHVAMEES---VFWE 315
Query: 229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN 288
           CK + +P+P  +W K    +    +I+I   EQ      I  ++     D+G Y+C  +N
Sbjct: 316 CKANGRPKPTYRWLKNGDPLLTRDRIQI---EQGTLNITIVNLS-----DAGMYQCVAEN 367
Query: 289 EFG 291
           + G
Sbjct: 368 KHG 370

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 139/364 (38%), Gaps = 62/364 (17%)
Query: 58  LTIKNVQKS-DSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-Q 115
           L I N  K+ D+G Y+ IA N  G             + KL+    +  +   + T+  +
Sbjct: 63  LLINNPNKTQDAGTYQCIATNSFG--------TIVSREAKLQFAYLENFKTRTRSTVSVR 114
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---YLLRLEINNPTK 172
            G  +V+ C     P P         +  +    + +++ + ++T   Y+ ++E     K
Sbjct: 115 RGQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE-----K 165
Query: 173 DDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMK 228
            D GNY C   N++           L  +       + P   ++ P  +P E GT ++++
Sbjct: 166 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLE 225
Query: 229 CKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
           C     P P + W +AD   + +++ + K            I EI +    D+G+Y C  
Sbjct: 226 CFALGNPVPTILWRRADGKPIARKARRHK---------SNGILEIPNFQQEDAGSYECVA 276
Query: 287 KNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
           +N  G                    P +++          + V  ECK   +P P   W 
Sbjct: 277 ENSRGKNVAKGQLTFYAQ-------PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 329
Query: 347 HEGKELQQTDRI-----SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
             G  L   DRI     + N+T+      + L        D G+Y+C  +N HG + ++ 
Sbjct: 330 KNGDPLLTRDRIQIEQGTLNITI------VNL-------SDAGMYQCVAENKHGVIFSSA 376
Query: 402 TLNI 405
            L++
Sbjct: 377 ELSV 380

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIW---------YQGTKVIEDTGRIKMSKKSIGKD 159
           K  T +++G + ++ C  E  P+P+I W          +G K ++  GRI++ K   G  
Sbjct: 8   KNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLD--GRIEV-KGQHGSS 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
           +    L I +    D G Y C A + IG    ++ L+ +       +AP FI    I  +
Sbjct: 64  S----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYS 112
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQDDTYEIICEITDPIG 276
             G  I + C   + P   + W + DKLV   K ++ +K     +    ++I EI     
Sbjct: 113 WEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSD 167
Query: 277 PDSGTYRCNVKNEFG 291
            D G Y C   N  G
Sbjct: 168 NDFGRYNCTATNHIG 182

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIW---------YQGTKVIEDTGRIKMSKKSIGKD 159
           K  T +++G + ++ C  E  P+P+I W          +G K ++  GRI++ K   G  
Sbjct: 8   KNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLD--GRIEV-KGQHGSS 63
Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
           +    L I +    D G Y C A + IG    ++ L+ +       +AP FI    I  +
Sbjct: 64  S----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYS 112
Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQDDTYEIICEITDPIG 276
             G  I + C   + P   + W + DKLV   K ++ +K     +    ++I EI     
Sbjct: 113 WEGNPINISCDVKSNPPASIHW-RRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSD 167
Query: 277 PDSGTYRCNVKNEFG 291
            D G Y C   N  G
Sbjct: 168 NDFGRYNCTATNHIG 182

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 11/209 (5%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P FI+ P      SG +    C+ + +P+P + W K  K V  S + ++I  E DD    
Sbjct: 7   PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVI--EFDDGAGS 63
Query: 268 ICEITD-PIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
           +  I    +  D   Y C   N  G                    P+    P+++  +  
Sbjct: 64  VLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKA 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF   K+    D  + N  +K  +    L+++   + D G Y
Sbjct: 124 RTATMLCAAGGNPDPEISWF---KDFLPVDPATSNGRIKQLRSGA-LQIESSEESDQGKY 179
Query: 387 KCNIKNFHG---ELNANLTLNIEMVRFIK 412
           +C   N  G      ANL + +  V   K
Sbjct: 180 ECVATNSAGTRYSAPANLYVRVRRVAGTK 208

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 20/214 (9%)
Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV---KESSKIKIIVNEQD 262
           F P  +E P  +    G    + CK   +P P ++W+K  + V   K+  +   ++    
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRS 322
             + +         PD G Y C  +N  G                +     F + P    
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD-----FRQNPSDVM 122
Query: 323 EQGGKLVVMECK-VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
              G+  VMEC+  +  P P I W  +G  L   D     +T++G K  I       RK 
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE---RITIRGGKLMITYT----RKS 175
Query: 382 DTGLYKCNIKNFHGELN---ANLTLNIEMVRFIK 412
           D G Y C   N  GE     A LT+ +E   F+K
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTV-LERPSFVK 208

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 22/209 (10%)
Query: 201 ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
           E GA   P  I KP+      G +    C     P P + W K  K V   ++ +  V E
Sbjct: 1   ETGA-HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLE 58
Query: 261 QDDTYEIICEITDPI--GPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDP-----PT 313
           Q     I+    +P+  G D   Y C  +N  G                EGD      P 
Sbjct: 59  QPGGISIL--RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY----EGDKTPAGFPV 112
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
             + P  R  + G  V+M CK    P P I W    K   + D  +   +LK D +   L
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI---KNQTKVDMSNPRYSLK-DGF---L 165
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLT 402
           ++++ R+ED G Y+C  +N  G  ++  T
Sbjct: 166 QIENSREEDQGKYECVAENSMGTEHSKAT 194

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 11/209 (5%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P FI++P+     SG +    C+ +  P+P V W K  K V  S + + I  E D++   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
           +  I     P D   Y C  +N  G                    P     P+++  +  
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF   K+    D  + N  +K  +    L+++   + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGA-LQIESSEETDQGKY 179
Query: 387 KCNIKNFHG---ELNANLTLNIEMVRFIK 412
           +C   N  G      ANL + +  V   K
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVRRVAGTK 208

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 8/189 (4%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P FI++P+     SG +    C+ +  P+P V W K  K V  S + + I  E D++   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
           +  I     P D   Y C  +N  G                    P     P+++  +  
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF   K+    D  + N  +K  +    L+++   + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSASNGRIKQLRSGA-LQIESSEETDQGKY 179
Query: 387 KCNIKNFHG 395
           +C   N  G
Sbjct: 180 ECVATNSAG 188

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP FI+ P+  S   G+   M+ KV   P P++ W+  G+ +Q  D     V+ KG  + 
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG-LHS 63
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +  EV   R  D G Y C  KN  GE    + L++
Sbjct: 64  LIFEVV--RASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
           G    +GF P F++ P  +  + G L +M CK S  P P++ W    K V+  S  K++V
Sbjct: 1   GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
            E      II  +T     D+G Y C   N  G
Sbjct: 61  RENGVHSLIIEPVTS---RDAGIYTCIATNRAG 90

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P F++ P   + Q GKL  M+CKV   P P++ W  +GK ++     +  + ++ +  H 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS--AHKMLVRENGVH- 66
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
            L ++     D G+Y C   N  G+ + +L L
Sbjct: 67  SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 95/260 (36%), Gaps = 16/260 (6%)
Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
           G + PRF K+P   I   G +    C     P P + W + G KV           +S G
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-FQGGENGAGFAPSFIEKPRI 216
               +LR++     +D+   Y C A NS+GE   +  L   +  +  +GF P+    P++
Sbjct: 63  A---VLRIQPLRTPRDEN-VYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117
Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
              E      M C  S  P PE+ WFK    V  S+    I   +    +I  E ++   
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI--ESSEET- 174
Query: 277 PDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
            D G Y C   N  G                +   P F   P       G  V + C   
Sbjct: 175 -DQGKYECVATNSAGVRYSSPANLYVRV---QNVAPRFSILPMSHEIMPGGNVNITCVAV 230
Query: 337 AKPMPEIVWFHEGKELQQTD 356
             PMP + W    ++L   D
Sbjct: 231 GSPMPYVKWMQGAEDLTPED 250

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 5/189 (2%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P F   P      SG +    C+ +  PRP++ W K  K V   S  +  V E DD    
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV---SNQRFEVIEFDDGSGS 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
           +  I     P D   Y C   N  G                    PT    P+++  +  
Sbjct: 64  VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF +   +  ++       L+ +     L+++   + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA-LQIEQSEESDQGKY 182
Query: 387 KCNIKNFHG 395
           +C   N  G
Sbjct: 183 ECVATNSAG 191

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 14/192 (7%)
Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P FI+KP      SG +    C+ +  P+P V W K  K V  S + + I  E D++   
Sbjct: 7   PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETI--EFDESAGA 63
Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGG 326
           +  I     P D   Y C  +N  G                    P     P+++  +  
Sbjct: 64  VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERT 123
Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDT 383
           +   M C     P PEI WF   K+    D  + N  +K     +R   L+++   + D 
Sbjct: 124 RTATMLCAASGNPDPEITWF---KDFLPVDPSTSNGRIK----QLRSGGLQIESSEETDQ 176
Query: 384 GLYKCNIKNFHG 395
           G Y+C   N  G
Sbjct: 177 GKYECVASNSAG 188

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDK 368
           PP FI+KP  +    G +    C+    P P + W  +GK++  Q+ + I ++ +  G  
Sbjct: 6   PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-AGAV 64
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             I+  ++ PR E+  +Y+C  +N HGE+  +  L +
Sbjct: 65  LRIQ-PLRTPRDEN--IYECVAQNPHGEVTVHAKLTV 98

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 122 MECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
           + C +   P P + WY QG ++I D  + ++ +   G      +L I + T DD   Y+ 
Sbjct: 22  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDATVYQV 77
Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES------GTLIQMKCKCSAK 234
            A N  G  +   +L  +         P+ I  P+ +          G ++ +K   S K
Sbjct: 78  RATNQGGSVSGTASLEVE--------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 129
Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG---PDSGTYRCNVKNEFG 291
           P P + W K   L+  +   ++IV            +  P G    D+G Y    KN FG
Sbjct: 130 PDPVITWQKGQDLIDNNGHYQVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFG 183

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 101 GGKAPRFPKK----PTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
           G  AP F ++       +Q    LV  C +   P P + WY QG ++I D  + ++ +  
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLV--CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
            G      +L I + T DD   Y+  A N  G  +   +L  +         P+ I  P+
Sbjct: 59  GGYH----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--------VPAKIHLPK 106
Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
            +          G ++ +K   S KP P + W K   L+  +   ++IV           
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS------FT 160
Query: 270 EITDPIG---PDSGTYRCNVKNEFG 291
            +  P G    D+G Y    KN FG
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFG 185

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 101 GGKAPRFPKK----PTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
           G  AP F ++       +Q    LV  C +   P P + WY QG ++I D  + ++ +  
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLV--CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
            G      +L I + T DD   Y+  A N  G  +   +L  +         P+ I  P+
Sbjct: 59  GG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE--------VPAKIHLPK 106
Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
            +          G ++ +K   S KP P + W K   L+  +   ++IV           
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS------FT 160
Query: 270 EITDPIG---PDSGTYRCNVKNEFG 291
            +  P G    D+G Y    KN FG
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFG 185

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ-QTDRISWNVTLKGDKYH 370
           P FI KP+ +    G  V +EC++ A P P++ W    + +Q  TDRIS     + +   
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS---LYQDNTGR 72
Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           + L +KD  K+D G Y  +  N  G    N  L++
Sbjct: 73  VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107

>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
           V++KP  E+ W+H G ELQ++ +I +  T       + LE+ D   +D+G Y+    N+ 
Sbjct: 32  VQSKPTAEVKWYHNGVELQESSKIHYTNT----SGVLTLEILDCHTDDSGTYRAVCTNYK 87
Query: 395 GELNANLTLNI 405
           GE +   TL++
Sbjct: 88  GEASDYATLDV 98

>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 212 EKPRIIPNESGTLIQMK----------CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ 261
           EKP + P  + T++ M+          CK    P PEV WFK D  VKES   +I  +E+
Sbjct: 36  EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE 95
Query: 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
            +    I E+    G D   Y C   N  G
Sbjct: 96  GNCSLTISEV---CGDDDAKYTCKAVNSLG 122

>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 212 EKPRIIPNESGTLIQMK----------CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ 261
           EKP + P  + T++ M           CK    P PEV WFK D  VKES   +I  +E+
Sbjct: 36  EKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE 95
Query: 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
            +    I E+    G D   Y C   N  G
Sbjct: 96  GNCSLTISEV---CGDDDAKYTCKAVNSLG 122

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           +P  IE P    +  NE  TL    CK   KP P ++WFK  + V  + K    V  +D 
Sbjct: 9   SPRIIEHPTDLVVKKNEPATL---NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
                  +      D G Y C  KN  G                +     F  +PK    
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-----FRVEPKDTRV 120
Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------LEVK 376
             G+  ++EC   K  P P ++W  +G  L     +S+     G    +R      L + 
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF-----GASSRVRIVDGGNLLIS 175
Query: 377 DPRKEDTGLYKCNIKNFHG 395
           +    D G YKC  +N  G
Sbjct: 176 NVEPIDEGNYKCIAQNLVG 194

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P  IE P     +  +   + CKV+ KP P I WF +G+ +   ++ S  V  K      
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVR 409
              ++  +++D G Y C  KN  G+ ++ + +L I ++R
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR 108

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 23/199 (11%)
Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           +P  IE P    +  NE  TL    CK   KP P ++WFK  + V  + K    V  +D 
Sbjct: 9   SPRIIEHPTDLVVKKNEPATL---NCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65
Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSE 323
                  +      D G Y C  KN  G                +     F  +PK    
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD-----FRVEPKDTRV 120
Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------LEVK 376
             G+  ++EC   K  P P ++W  +G  L     +S+     G    +R      L + 
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF-----GASSRVRIVDGGNLLIS 175
Query: 377 DPRKEDTGLYKCNIKNFHG 395
           +    D G YKC  +N  G
Sbjct: 176 NVEPIDEGNYKCIAQNLVG 194

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P  IE P     +  +   + CKV+ KP P I WF +G+ +   ++ S  V  K      
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVR 409
              ++  +++D G Y C  KN  G+ ++ + +L I ++R
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR 108

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
           +G PP F+ +P+      G    ++C V  +P P +VW   G++L  ++R+S+     G 
Sbjct: 11  QGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 68
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
           ++ + L    P   D G+Y C  +N
Sbjct: 69  EHGLLLTAALP--TDAGVYVCRARN 91

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 35/244 (14%)
Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGS-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
           + LTI N    D+G YK +   ++G  S +TVN+   +     K+    AP     P   
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-----KLMFKNAP----TPQEF 112
Query: 115 QDGDLLVMECVLEASPMPDIIW-YQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPT 171
           ++G+  V+ C + +S  P IIW ++G  VI  +D   I +S            L+I    
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---------YLQIRGIK 163
Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES--GTLIQMKC 229
           K D G YRC      G   A   +NF+  +      P+   +  I+   +  G  + + C
Sbjct: 164 KTDEGTYRCE-----GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVC 218
Query: 230 KCSAKPRPEVKWFKADKLV--KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
                P P + W K  + +  +E    K I +  DD+ E+     D    D   Y C  +
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDK--NDEAEYVCIAE 274
Query: 288 NEFG 291
           N+ G
Sbjct: 275 NKAG 278

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 37/183 (20%)
Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD- 116
           L +++V  SD G Y  + +NK G    T  L+  E             R P +P +    
Sbjct: 74  LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-------------RSPHRPILQAGL 120
Query: 117 --------GDLLVMECVLEASPMPDIIWYQ-----GTKVIED-TGRIKMSKKSIGKDTYL 162
                   G  +   C + +   P I W +     G+KV  D T  + + K  I +    
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 163 -LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
            +RL + N ++ DGG Y C A N IG +     L+  G        P   E+  +  +E+
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG--------PRAAEEELVEADEA 232
Query: 222 GTL 224
           G++
Sbjct: 233 GSV 235

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 21/207 (10%)
Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
           +++   +   ++ +C  +  P P + W K  +  +   +I  I   +   + ++ E   P
Sbjct: 23  KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI-KLRHQQWSLVMESVVP 81
Query: 275 IGPDSGTYRCNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKL---VVM 331
              D G Y C V+N+FG                E  P   I +  + + Q   L   V  
Sbjct: 82  --SDRGNYTCVVENKFGSIRQTYTLDVL-----ERSPHRPILQAGLPANQTAVLGSDVEF 134
Query: 332 ECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLK-----GDKYHIRLEVKDPRKED 382
            CKV +   P I W       G ++   D   +   LK       +  +RL + +  + D
Sbjct: 135 HCKVYSDAQPHIQWLKHVEVNGSKV-GPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193
Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVR 409
            G Y C   NF G       L++   R
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSVHGPR 220

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 141/397 (35%), Gaps = 92/397 (23%)
Query: 57  VLTIKNVQKSDSGEYKVIAKN--KNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI- 113
           VLTI  V + D+G Y VI  N     + S  V+L        + VP    P+  +K  I 
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL-------VVYVP----PQIGEKSLIS 430
Query: 114 ----HQDGDLLVMECVLEASPMPDII-WY------------QGTKV-----------IED 145
               +Q G    + C + A P P  I WY            Q   V           +ED
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVED 490
Query: 146 ---TGRIKMSKKSI----GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
                +I+++K       GK+  +  L I     +    Y+C A N +G     I+ +  
Sbjct: 491 FQGGNKIEVNKNQFALIEGKNKTVSTLVIQ--AANVSALYKCEAVNKVGRGERVISFHVT 548
Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-------------- 244
            G       P    +P + P E  + + + C         + W+K               
Sbjct: 549 RG-------PEITLQPDMQPTEQES-VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 245 ------DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXX 298
                 D L K ++ +    N  +D   +I E+ +    D G Y C  ++          
Sbjct: 601 PVCKNLDTLWKLNATM--FSNSTNDI--LIMELKNASLQDQGDYVCLAQDR---KTKKRH 653
Query: 299 XXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI 358
                    E   PT     + ++   G+ + + C     P P+I+WF + + L +   I
Sbjct: 654 CVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713
Query: 359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
              V   G++    L ++  RKED GLY C   +  G
Sbjct: 714 ---VLKDGNR---NLTIRRVRKEDEGLYTCQACSVLG 744

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD- 116
           L +++V  SD G Y  + +NK G    T  L+  E             R P +P +    
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE-------------RSPHRPILQAGL 228
Query: 117 --------GDLLVMECVLEASPMPDIIWYQ-----GTKVIEDTGRIKMSKKSIGKDTY-- 161
                   G  +   C + +   P I W +     G+KV  D        K+ G +T   
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 162 -LLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
            L  L ++N T +D G Y C A NSIG S+ +  L
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 35/227 (15%)
Query: 142 VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC-----------------NACN 184
           V + TG +   +  +G      RL++ N + +D G Y C                 +A +
Sbjct: 44  VKDGTGLVPSERVLVGPQ----RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPS 99
Query: 185 SIGESNANIALNFQGGENGAGF--APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWF 242
           S  + +        G + GA +   P  ++K +++   +   ++ +C  +  P P + W 
Sbjct: 100 SGDDEDGEDEAEDTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 243 KADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGXXXXXXXXXXX 302
           K  +  +   +I  I   +   + ++ E   P   D G Y C V+N+FG           
Sbjct: 159 KNGREFRGEHRIGGI-KLRHQQWSLVMESVVP--SDRGNYTCVVENKFGSIRQTYTLDVL 215
Query: 303 XXXXPEGDPPTFIEKPKIRSEQGGKL---VVMECKVKAKPMPEIVWF 346
                E  P   I +  + + Q   L   V   CKV +   P I W 
Sbjct: 216 -----ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
           +G PP F+  P+      G    ++C V  +P P +VW   G++L  ++R+S+     G 
Sbjct: 11  QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 68
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
           ++ + L    P   D G+Y C  +N
Sbjct: 69  EHGLLLTAALP--TDAGVYVCRARN 91

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
           +G PP F+  P+      G    ++C V  +P P +VW   G++L  ++R+S+     G 
Sbjct: 10  QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA 67
Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKN 392
           ++ + L    P   D G+Y C  +N
Sbjct: 68  EHGLLLTAALP--TDAGVYVCRARN 90

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           G PP     P   S   GK++ + C    +P PE+ W   G+++   ++  +++    D 
Sbjct: 5   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
               L + D +K+D GLY  ++ N  G  +A + ++I  +
Sbjct: 65  --TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 102

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
            + KP+  +   G+     C    +P+P + W  +G+ L  + R     T    KY    
Sbjct: 11  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT----KYKSTF 66
Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           E+   +  D G Y   ++N  G+  A  TL I+
Sbjct: 67  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 99

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           G PP     P   S   GK++ + C    +P PE+ W   G+++   ++  +++    D 
Sbjct: 3   GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
               L + D +K+D GLY  ++ N  G  +A + ++I  +
Sbjct: 63  --TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--ELQQTDRISWNVTL- 364
           E  PP  +E P       G+   + CK + +P P I W+  G+  E  + D  S  + L 
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
            G  + +R+      + D G+Y C  +N+ GE
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/345 (20%), Positives = 124/345 (35%), Gaps = 71/345 (20%)
Query: 57  VLTIKNVQKSDSGEYKVIAKNK-NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
            LT+ NV ++D+  YK   +N  +   S +V LN         + G  AP      T ++
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV--------LYGPDAPTISPLNTSYR 216
Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
            G+ L + C   ++P     W+         G  + S +          L I N T ++ 
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVN-------GTFQQSTQ---------ELFIPNITVNNS 260
Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAP---SFIEKPRIIPNESGTLIQMKCKCS 232
           G+Y C A NS      +  LN         +A     FI      P E    + + C+  
Sbjct: 261 GSYTCQAHNS------DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE-- 312
Query: 233 AKPRPEVK-----WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK 287
               PE++     W+  ++ +  S ++++  +  + T  ++    + +GP    Y C ++
Sbjct: 313 ----PEIQNTTYLWWVNNQSLPVSPRLQL--SNDNRTLTLLSVTRNDVGP----YECGIQ 362
Query: 288 NEFGXXXXXXXXXXXXXXXPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
           NE                    D PT    P     + G  + + C   + P  +  W  
Sbjct: 363 NELSVDHSDPVILNVLYGP---DDPTI--SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
           +G   Q T                 L + +  ++++GLY C   N
Sbjct: 418 DGNIQQHTQ---------------ELFISNITEKNSGLYTCQANN 447

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
           T ++   + S+   K  V   K   +P P  +W  +GK + Q  +      L  DK    
Sbjct: 11  TGLQDTTVSSDSVAKFAV---KATGEPRPTAIWTKDGKAITQGGKYK----LSEDKGGFF 63
Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
           LE+      D+GLY C +KN  G ++++  L I+ +
Sbjct: 64  LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
           ++ KC  S  P+P ++W K  K  K   +I          Y     I D + P D G Y 
Sbjct: 35  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRI----GGYKVRYATWSIIMDSVVPSDKGNYT 90
Query: 284 CNVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPM 340
           C V+NE+G                E  P   I +   P  ++   G  V   CKV + P 
Sbjct: 91  CIVENEYGSINHTYQLDVV-----ERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQ 145
Query: 341 PEIVWFHE----GKELQQTDRISWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNI 390
           P I W       G ++   D + +   LK       DK    L +++   ED G Y C  
Sbjct: 146 PHIQWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 204
Query: 391 KNFHG 395
            N  G
Sbjct: 205 GNSIG 209

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 225 IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC 284
           ++ KC  S  P+P ++W K  K  K   +I      +  T+ II +   P   D G Y C
Sbjct: 34  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGY-KVRYATWSIIMDSVVP--SDKGNYTC 90
Query: 285 NVKNEFGXXXXXXXXXXXXXXXPEGDPPTFIEK---PKIRSEQGGKLVVMECKVKAKPMP 341
            V+NE+G                E  P   I +   P  ++   G  V   CKV + P P
Sbjct: 91  IVENEYGSINHTYQLDVV-----ERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQP 145
Query: 342 EIVWFHE----GKELQQTDRISWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNIK 391
            I W       G ++   D + +   LK       DK    L +++   ED G Y C   
Sbjct: 146 HIQWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAG 204
Query: 392 NFHG 395
           N  G
Sbjct: 205 NSIG 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-81
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-80
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-74
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-62
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-70
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-67
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-55
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-54
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-53
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-31
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-64
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-55
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-46
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-61
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-53
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-53
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-52
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-39
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-24
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-56
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-47
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-46
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-52
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-46
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-36
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-28
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-52
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-40
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-51
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-45
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-39
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-51
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-46
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-46
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-45
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-50
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-44
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-23
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-49
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-43
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-41
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-21
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-49
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-35
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-32
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-18
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-49
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-39
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-23
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-49
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-41
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-37
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-20
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-46
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-42
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-25
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-46
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-38
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-45
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-35
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-32
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-45
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-42
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-40
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-45
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-42
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-45
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-37
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-29
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-43
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-33
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-27
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-41
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-38
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-25
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-05
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-41
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-36
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-39
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-32
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-22
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-37
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-31
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-37
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-28
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-21
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-36
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-32
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-21
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-07
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-35
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-29
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-23
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-35
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-21
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-34
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-31
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-27
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-29
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-21
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-33
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-29
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-28
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-33
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-30
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-20
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-33
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-29
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-22
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-20
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-06
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-31
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-27
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-23
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-31
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-28
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-10
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-31
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-27
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-27
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-30
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-27
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-30
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-20
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-29
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-25
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-21
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-29
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-22
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-14
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-29
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-27
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-18
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-29
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-25
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-28
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-22
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-17
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-17
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-28
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-27
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-21
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-27
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-23
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-18
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-26
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-22
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-26
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-26
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-23
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-13
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-26
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-24
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-19
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-26
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-21
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-22
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-09
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-24
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	9e-24
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-23
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-19
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-12
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-22
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-22
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-16
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-22
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-19
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-18
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-20
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-17
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-21
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-21
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-20
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-18
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-21
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-19
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-19
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-20
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-16
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-20
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-15
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-20
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-20
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	5e-15
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-06
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-20
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-20
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-18
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	9e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	8e-20
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	9e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-17
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-15
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-06
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-06
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-19
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-13
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-19
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-18
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-09
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-08
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	6e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-16
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-18
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-15
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-18
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-17
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-12
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	9e-18
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-13
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-12
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	6e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-17
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-17
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-12
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-16
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-13
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-16
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-04
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	5e-16
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-08
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-15
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-15
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-12
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	5e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-15
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	7e-13
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-07
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	8e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-14
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-07
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-14
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-14
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-14
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	6e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-12
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-05
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-13
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-13
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-13
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-07
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-13
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-09
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-10
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-12
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	7e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-12
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	8e-10
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-09
2ens_A	96	Advanced glycosylation END product-specific recept	5e-12
2ens_A	96	Advanced glycosylation END product-specific recept	3e-09
2ens_A	96	Advanced glycosylation END product-specific recept	1e-08
2ens_A	96	Advanced glycosylation END product-specific recept	1e-05
2ens_A	96	Advanced glycosylation END product-specific recept	2e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	3e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	9e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-11
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	9e-07
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-10
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-10
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	9e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-10
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	6e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	8e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	7e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	7e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	9e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	4e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-07
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  264 bits (677), Expect = 1e-81
 Identities = 92/479 (19%), Positives = 172/479 (35%), Gaps = 87/479 (18%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y + + L+ +         + + L       I  V  SD GEY   A+N  G  +S+  L
Sbjct: 40  YKEHTKLRSAPAYKMQFKNNVASL------VINKVDHSDVGEYTCKAENSVGAVASSAVL 93

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
              E            P F +K        G  +  EC +  S    + WY+  ++++D 
Sbjct: 94  VIKER--------KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDD 145

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
             ++ S            L+I    +   G Y C+A N +G ++++  L     E     
Sbjct: 146 ANLQTSFIHNV-----ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE----V 196

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P F  KP  +    G     KC  +     ++ W K ++ ++     K+ + E   T  
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL- 255

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE-QG 325
               +      D+G Y C   N  G+ + +  L ++        PP FI+K +     + 
Sbjct: 256 ---TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQ 305

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
            +    ECK+   P  +++W+ +  E+Q++ +      +   +    LE+ +   ED+G 
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKF----RMSFVESVAVLEMYNLSVEDSGD 361

Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
           Y C   N  G  +++ +L ++                                       
Sbjct: 362 YTCEAHNAAGSASSSTSLKVK--------------------------------------- 382

Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
                    PV R+ P  V   K   V +EC++       V+W K+K  ++   K+ + 
Sbjct: 383 -------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 434

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  261 bits (668), Expect = 2e-80
 Identities = 91/477 (19%), Positives = 167/477 (35%), Gaps = 90/477 (18%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y  G LLK    L ++ + + + L       I    +S  G+Y   A N  G  SS+  L
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQ------ILQTDQSHVGQYNCSASNPLGTASSSAKL 189

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
             SE            P F  KP       G+    +C +  +    I W +  + I   
Sbjct: 190 TLSEH--------EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
           G  KM+            L +   TK D G Y C A N  G+ + +  L  Q        
Sbjct: 242 GNYKMTLVENTA-----TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------- 289

Query: 207 APSFIEKPRIIPN-ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
            P FI+K       +     + +CK    P  +V W+K +  ++ESSK ++     +   
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF--VESVA 347

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
            +   + +    DSG Y C   N  G ++++ +L ++        PP F +KP       
Sbjct: 348 VLE--MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLK 398

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V +EC+++  P  ++ W  + +EL+   +      +  + +   + + +    D G 
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKY----KIMSENFLTSIHILNVDSADIGE 454

Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
           Y+C   N  G      ++ ++                                       
Sbjct: 455 YQCKASNDVGSDTCVGSITLK--------------------------------------- 475

Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
                    P   +    ++    + V ++  +      SV W K+K  +  ++ ++
Sbjct: 476 -------APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNI 525

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  246 bits (629), Expect = 1e-74
 Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 48/381 (12%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                 ++       TLV++ +       LT+  V K D+G+Y   A N  G+ S +  L
Sbjct: 232 AKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIED 145
              E            PRF KK    +     +    EC +  SP   ++WY+    I++
Sbjct: 286 GVQE-----------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + + +MS         +  LE+ N + +D G+Y C A N+ G ++++ +L  +       
Sbjct: 335 SSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------ 383

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
             P F +KP  +    G  + ++C+    P  +V W K  + ++   K KI+      + 
Sbjct: 384 -PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442

Query: 266 EIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            I       +   D G Y+C   N+ G      ++ ++A       PP F++K    S  
Sbjct: 443 HI-----LNVDSADIGEYQCKASNDVGSDTCVGSITLKA-------PPRFVKKLSDISTV 490

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
            G+ V ++  ++      + WF +  E+ +      N+ +   +    L+       + G
Sbjct: 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESD---NIWISYSENIATLQFSRAEPANAG 547

Query: 385 LYKCNIKNFHGELNANLTLNI 405
            Y C IKN  G      TL++
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  213 bits (543), Expect = 3e-62
 Identities = 75/408 (18%), Positives = 139/408 (34%), Gaps = 70/408 (17%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           + P F +         G+ + ++C ++ +P   I WY+    +      KM  K+     
Sbjct: 4   EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV--- 60

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
               L IN     D G Y C A NS+G   ++  L  +         PSF  K + +   
Sbjct: 61  --ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKE----RKLPPSFARKLKDVHET 114

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G  +  +C+ +     +V W+K  +L+K+ + ++        T +I            G
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI----LQTDQSHVG 170

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
            Y C+  N  G ++++  L +         PP F  KP       G+    +C V     
Sbjct: 171 QYNCSASNPLGTASSSAKLTLS----EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAP 226

Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
            +I W  + +E++        +TL  +     L V    K D G Y C   N  G+ + +
Sbjct: 227 IKITWAKDNREIRPGGNY--KMTLVENTAT--LTVLKVTKGDAGQYTCYASNVAGKDSCS 282

Query: 401 LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV 460
             L ++                                                P   + 
Sbjct: 283 AQLGVQ----------------------------------------------EPPRFIKK 296

Query: 461 PK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
            +    + + +    ECK+    E  V W K++  ++E +K  +   +
Sbjct: 297 LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE 344

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  240 bits (614), Expect = 2e-70
 Identities = 81/458 (17%), Positives = 153/458 (33%), Gaps = 83/458 (18%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPTIH 114
           VL I++V+K D G Y+   +N      ++  L                P      +    
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR--------FDPPVIRQAFQEETM 441

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
           + G  + ++CV   +P P+I W    K I +  R ++ +        +  L I +   +D
Sbjct: 442 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
           GG Y+C A + +G +  +  LN  G          +I +       +G  + + C  +  
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVYG--------LPYIRQMEKKAIVAGETLIVTCPVAGY 553

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES- 293
           P   + W + ++ +  + K K+     + T  I   +      D  TY C  KN+ G S 
Sbjct: 554 PIDSIVWERDNRALPINRKQKVF---PNGTLIIE-NVERN--SDQATYTCVAKNQEGYSA 607

Query: 294 NANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKE 351
             +L + +          P  I    +    Q G+ + + C V    +P  I W  +G+ 
Sbjct: 608 RGSLEVQVMV-------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA 660

Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
           + +   I+ +   +       L ++       G + C+ +N  G       LN+      
Sbjct: 661 ISEDLGITTSRVGRRGSV---LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY----- 712

Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
                                                    V P     P     ++   
Sbjct: 713 -----------------------------------------VPPRWILEPTDKAFAQGSD 731

Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
             +ECK     +P VTW K       + K +   + ++
Sbjct: 732 AKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  232 bits (593), Expect = 1e-67
 Identities = 87/452 (19%), Positives = 149/452 (32%), Gaps = 83/452 (18%)

Query: 58  LTIKNVQKSDS-GEYKVIAKNKNGEG---SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
           L I+ V   D    Y+   K++       S+T       E     VP   +       T 
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260

Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
                 + + C  +  P+P   WY+  +       + ++ +          L I +   +
Sbjct: 261 -SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVE 316

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
           D G Y C   NS+G  +    L             S    P     + G      C+ + 
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPPTQTVDFGRPAVFTCQYTG 369

Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
            P   V W K  K +  S  +  I + + +              D G Y+C V+N+   +
Sbjct: 370 NPIKTVSWMKDGKAIGHSESVLRIESVKKE--------------DKGMYQCFVRNDRESA 415

Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQ 353
            A+  L +    +P    P   +  +  + + G  V ++C     P PEI W  +GK++ 
Sbjct: 416 EASAELKLGGRFDP----PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA 471

Query: 354 QTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
             DR  +   VT+ GD     L +      D GLYKC  K+  G    +  LN+      
Sbjct: 472 NNDRYQVGQYVTVNGDVVSY-LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY----- 525

Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
                                                     +P IR++ K   I   +T
Sbjct: 526 -----------------------------------------GLPYIRQMEK-KAIVAGET 543

Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
           +++ C V      S+ W ++   +  + K  V
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKV 575

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  199 bits (507), Expect = 1e-55
 Identities = 77/498 (15%), Positives = 155/498 (31%), Gaps = 100/498 (20%)

Query: 40  RLSSTLVQDQSRLYYL---AVLTIKNVQKSD------SGEYKVIAKNKNGE-GSSTVNLN 89
           R   T V D   L  +     L     +  D      +  Y  +A+N+ G   S  V++ 
Sbjct: 75  RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 134

Query: 90  FSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLE---ASPMPDIIWYQGTKVIE 144
                         A  +           G+  V++C++    A  +  + W+   +   
Sbjct: 135 AVV-----------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183

Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIG--ESNANIALNFQGGE 201
             G     K  +        L I      D   +Y+C   + +      +         E
Sbjct: 184 FPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240

Query: 202 NGAGFAPSFIE--KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
             +   P  +   K  +      + + + C     P P  +W+K  +       + +   
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDR 300

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
            +  +  +I  I D +  DSG Y C V N  G  +    L + A       P +    P 
Sbjct: 301 VKQVSGTLI--IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPP 351

Query: 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
            ++   G+  V  C+    P+  + W  +GK +  ++ +              L ++  +
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVK 397

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
           KED G+Y+C ++N      A+  L                                    
Sbjct: 398 KEDKGMYQCFVRNDRESAEASAELK----------------------------------- 422

Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
                   +      PVIR+  +  T+    +V ++C       P ++W  +   +  ++
Sbjct: 423 --------LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474

Query: 500 KHVVHIEQVKDVSMNFEL 517
           ++ V      +  +   L
Sbjct: 475 RYQVGQYVTVNGDVVSYL 492

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  195 bits (496), Expect = 4e-54
 Identities = 73/377 (19%), Positives = 126/377 (33%), Gaps = 51/377 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G  +  +DR         +    ++ L I +V  +D G YK IAK+K G    +  L
Sbjct: 464 ELDGKKIANNDRYQVGQYVTVNGDV-VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522

Query: 89  NFSEEDGKLKVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
           N               P     +K  I   G+ L++ C +   P+  I+W +  + +   
Sbjct: 523 NVYG-----------LPYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPIN 570

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKD-DGGNYRCNACNSIGES-NANIALNFQGGENGA 204
            + K+             L I N  ++ D   Y C A N  G S   ++ +         
Sbjct: 571 RKQKVFPNG--------TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV----- 617

Query: 205 GFAPSFIEK-PRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQD 262
              P  I       P + G  + + C       P  + W    + + E   I      + 
Sbjct: 618 --LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
            +   I  +       +G + C+ +N  G       LN+         PP +I +P  ++
Sbjct: 676 GSVLTIEAVEAS---HAGNFTCHARNLAGHQQFTTPLNVY-------VPPRWILEPTDKA 725

Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI---RLEVKDPR 379
              G    +ECK    P P++ W     +     +         D   +    L V + +
Sbjct: 726 FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKK----SDNIRVEEGTLHVDNIQ 781

Query: 380 KEDTGLYKCNIKNFHGE 396
           K + G Y C   N  G 
Sbjct: 782 KTNEGYYLCEAINGIGS 798

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  192 bits (490), Expect = 3e-53
 Identities = 74/470 (15%), Positives = 130/470 (27%), Gaps = 91/470 (19%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP---TIH 114
           + + N +      +  +A    G  +   N               K P F K+P      
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANP---------PDADQKGPVFLKEPTNRIDF 51

Query: 115 QDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
            +     +EC    +PMP+IIW       + D   ++      G      +L       +
Sbjct: 52  SNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-G------KLVFPPFRAE 104

Query: 174 DG------GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM 227
           D         Y C A N  G   +            A  A  +           G    +
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVR------AVVAQYYEADVNKEHVIRGNSAVI 158

Query: 228 KC---KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS-GTYR 283
           KC      A     V W   ++                 + E+   I +    D   +Y+
Sbjct: 159 KCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH--IREVGPEDGYKSYQ 216

Query: 284 CNVKNEFGESN---ANLNLNIEAEAEPEGDPP-TFIEKPKIRSEQGGKLVVMECKVKAKP 339
           C  K+         A     +  E      P    + K  +++  G   + + C  +  P
Sbjct: 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYP 276

Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
           +P   W+   +   +   +  N   +  +    L +KD   ED+G Y C + N  G  + 
Sbjct: 277 VPVFRWYKFIEGTTRKQAVVLND--RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334

Query: 400 NLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE 459
              L +                                                    + 
Sbjct: 335 ETVLTVT----------------------------------------------APLSAKI 348

Query: 460 VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
            P   T+   +  V  C+       +V+WMK+   +      V+ IE VK
Sbjct: 349 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-SVLRIESVK 397

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  126 bits (319), Expect = 5e-31
 Identities = 55/287 (19%), Positives = 98/287 (34%), Gaps = 39/287 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGEGSSTVN 87
                 L ++ +    +  + +       L I+NV++ SD   Y  +AKN+ G  +    
Sbjct: 561 ERDNRALPINRKQ--KVFPNGT-------LIIENVERNSDQATYTCVAKNQEGYSARG-- 609

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMECVLEASPMP-DIIWYQGTKVI 143
                   +++V     PR             G  L + C +    +P +I W    + I
Sbjct: 610 ------SLEVQVMV--LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661

Query: 144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
            +   I  S+           L I        GN+ C+A N  G       LN       
Sbjct: 662 SEDLGITTSRVGRRGSV----LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---- 713

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
               P +I +P       G+  +++CK    P+P+V W KA        K  +  ++   
Sbjct: 714 ---PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DLKKSDNIR 769

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAEPE 308
             E    + +    + G Y C   N  G   S   + ++++A     
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM-ISVQAHHHHH 815

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  211 bits (539), Expect = 1e-64
 Identities = 67/306 (21%), Positives = 120/306 (39%), Gaps = 30/306 (9%)

Query: 104 APRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            P F  KP       G+    +C +  +    I W +  + I   G  KM+         
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL-----VEN 59

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN-E 220
              L +   TK D G Y C A N  G+ + +  L  Q         P FI+K       +
Sbjct: 60  TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVK 112

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
                + +CK    P  +V W+K +  ++ESSK ++   E     E+     +    DSG
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM----YNLSVEDSG 168

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
            Y C   N  G ++++ +L ++        PP F +KP       G  V +EC+++  P 
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPP 221

Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
            ++ W  + +EL+   +      +  + +   + + +    D G Y+C   N  G     
Sbjct: 222 FQVSWHKDKRELRSGKKY----KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCV 277

Query: 401 LTLNIE 406
            ++ ++
Sbjct: 278 GSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  186 bits (475), Expect = 2e-55
 Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 36/278 (12%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                 ++       TLV++ +       LT+  V K D+G+Y   A N  G+ S +  L
Sbjct: 40  AKDNREIRPGGNYKMTLVENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQGTKVIED 145
              E            PRF KK    +     +    EC +  SP   ++WY+    I++
Sbjct: 94  GVQE-----------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG 205
           + + +MS            LE+ N + +D G+Y C A N+ G ++++ +L  +       
Sbjct: 143 SSKFRMSFVE---SVA--VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------ 191

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
             P F +KP  +    G  + ++C+    P  +V W K  + ++   K KI+      + 
Sbjct: 192 -PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 250

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                I +    D G Y+C   N+ G      ++ ++A
Sbjct: 251 ----HILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  162 bits (411), Expect = 4e-46
 Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 62/302 (20%)

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           GA   P F  KP  +    G     KC  +     ++ W K ++ ++     K+ +   +
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--E 58

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK-IR 321
           +T  +   +      D+G Y C   N  G+ + +  L ++        PP FI+K +  R
Sbjct: 59  NTATL--TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSR 109

Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
             +  +    ECK+   P  +++W+ +  E+Q++ +    ++         LE+ +   E
Sbjct: 110 IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFR--MSFVESVA--VLEMYNLSVE 165

Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
           D+G Y C   N  G  +++ +L ++                                   
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVK----------------------------------- 190

Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
                        PV R+ P  V   K   V +EC++       V+W K+K  ++   K+
Sbjct: 191 -----------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY 239

Query: 502 VV 503
            +
Sbjct: 240 KI 241

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 98.3 bits (245), Expect = 4e-23
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 49/196 (25%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP F  KP       G+    +C V      +I W  + +E++          +   +  
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY----KMTLVENT 60

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
             L V    K D G Y C   N  G+ + +  L ++                        
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------------ 96

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                     P+F             I+++     + + +    ECK+    E  V W K
Sbjct: 97  --------EPPRF-------------IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 135

Query: 491 EKNTVKEDNKHVVHIE 506
           ++  ++E +K  +   
Sbjct: 136 DETEIQESSKFRMSFV 151

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  213 bits (542), Expect = 9e-61
 Identities = 76/546 (13%), Positives = 152/546 (27%), Gaps = 130/546 (23%)

Query: 11  TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDS 68
           T   E    I+     N  +  S  +    ++  L            + LTI  V +SD 
Sbjct: 247 TARTELNVGID----FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

Query: 69  GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVL 126
           G Y   A +      ++  +   E+                  ++ +   G+ + +    
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEK--------PFVAFGSGMESLVEATVGERVRIPAKY 354

Query: 127 EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI 186
              P P+I WY+    +E    IK              L I   ++ D GNY     N I
Sbjct: 355 LGYPPPEIKWYKNGIPLESNHTIKAGHV----------LTIMEVSERDTGNYTVILTNPI 404

Query: 187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKCKCSAKPRPE-VKWF 242
            +   +  ++           P   EK  I P +S   GT   + C   A P P  + W+
Sbjct: 405 SKEKQSHVVSLVVYV-----PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 459

Query: 243 KADKLVKESSKIKIIVNEQ-----------------------------DDTYEIICEITD 273
              +    +   + +                                 +   + +  +  
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519

Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC 333
                S  Y+C   N+ G     ++ ++          P    +P ++  +  + V + C
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVT-------RGPEITLQPDMQPTEQ-ESVSLWC 571

Query: 334 KVKAKPMPEIVWFHEGKELQQTDRISW----------------NVTLKGDKYHIRLEVKD 377
                    + W+  G +                          +        + +E+K+
Sbjct: 572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKN 631

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
              +D G Y C  ++   +    +   +                                
Sbjct: 632 ASLQDQGDYVCLAQDRKTKKRHCVVRQLT------------------------------- 660

Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKE 497
            V  +            P I    +  T S  +++ + C       P + W K+  T+ E
Sbjct: 661 -VLERVA----------PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE 709

Query: 498 DNKHVV 503
           D+  V+
Sbjct: 710 DSGIVL 715

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  193 bits (490), Expect = 1e-53
 Identities = 60/482 (12%), Positives = 121/482 (25%), Gaps = 81/482 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
               +      R+  T   D     +   LTI  V  +D+G YK   +  +      V +
Sbjct: 62  LWPNNQSGSEQRVEVTECSDGL---FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDII--WYQGTKVIEDT 146
               +     +            T ++    +V+ C+   S +   +   Y   + + D 
Sbjct: 119 Q---DYRSPFIASVSDQHGVVYITENK-NKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGF 206
            RI    K            I +      G   C A  +     + + +    G      
Sbjct: 175 NRISWDSKK--------GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR---I 223

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDT 264
               +     I    G  + + C    +    +   W       +    +   +  Q  +
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 265 YEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
                     I      D G Y C   +       +  + +      +           +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMESL 339

Query: 321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK 380
                G+ V +  K    P PEI W+  G  L+    I              L + +  +
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV---------LTIMEVSE 390

Query: 381 EDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN 440
            DTG Y   + N   +   +  +++                                   
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLV---------------------------------- 416

Query: 441 PQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDN 499
                  V     +     +  V +     T  + C V ++  P  + W  +      + 
Sbjct: 417 -------VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469

Query: 500 KH 501
             
Sbjct: 470 PS 471

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  191 bits (485), Expect = 6e-53
 Identities = 74/511 (14%), Positives = 142/511 (27%), Gaps = 104/511 (20%)

Query: 44  TLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
             V D +R+ +      TI +   S +G     AK  +    S + +          V  
Sbjct: 169 RFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVL 228

Query: 102 GKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIW---YQGTKVIEDTGRIKMSKKSIGK 158
                 P        G+ LV+ C         I +   Y  +K        +  K   G 
Sbjct: 229 S-----PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 159 DTYLL--RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
           +       L I+  T+ D G Y C A + +     +  +          F         +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE----KPFVAFGSGMESL 339

Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
           +    G  +++  K    P PE+KW+K    ++ +  IK         + +   I +   
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-------AGHVLT--IMEVSE 390

Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
            D+G Y   + N   +   +  +++     P+    + I          G    + C V 
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY--GTTQTLTCTVY 448

Query: 337 AKPMPE-IVWFHEGKELQQTDRISWN-----------------------------VTLKG 366
           A P P  I W+ + +E    +                                    L  
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
            K      +       + LYKC   N  G     ++ ++                     
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT-------------------- 548

Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSV 486
                                       P I   P +   +++++V + C        ++
Sbjct: 549 --------------------------RGPEITLQPDM-QPTEQESVSLWCTADRSTFENL 581

Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
           TW K        +   +     K++   ++L
Sbjct: 582 TWYKLGPQPLPIHVGELPTPVCKNLDTLWKL 612

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  190 bits (483), Expect = 1e-52
 Identities = 72/411 (17%), Positives = 132/411 (32%), Gaps = 72/411 (17%)

Query: 44  TLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKV---P 100
             ++    +    VLTI  V + D+G Y VI  N   +   +  ++       L V   P
Sbjct: 369 IPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS-------LVVYVPP 421

Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVI---------------- 143
                        +Q G    + C + A P P  I WY   +                  
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481

Query: 144 ----------EDTGRIKMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA 191
                     +   +I+++K   ++ +        +     +    Y+C A N +G    
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541

Query: 192 NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD------ 245
            I+ +   G       P    +P + P E    + + C         + W+K        
Sbjct: 542 VISFHVTRG-------PEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPI 593

Query: 246 ----------KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
                     K +    K+   +        +I E+ +    D G Y C  ++   +   
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653

Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
            +   +          PT     + ++   G+ + + C     P P+I+WF + + L + 
Sbjct: 654 CVVRQLTVLERV---APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 710

Query: 356 DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             I   V   G++    L ++  RKED GLY C   +  G         IE
Sbjct: 711 SGI---VLKDGNR---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  167 bits (423), Expect = 1e-44
 Identities = 54/464 (11%), Positives = 120/464 (25%), Gaps = 89/464 (19%)

Query: 60  IKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDG 117
           +++        +  +       G  +V+L                PR   +  I   +  
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSL--------------DLPRLSIQKDILTIKAN 46

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
             L + C        D +W       E    +           +   L I     +D G 
Sbjct: 47  TTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTEC----SDGLFCKTLTIPKVIGNDTGA 100

Query: 178 YRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP 237
           Y+C    +   S   + +      +    + S       I       + + C  S     
Sbjct: 101 YKCFYRETDLASVIYVYVQDY--RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLN 158

Query: 238 EV--KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
                 +   + V + ++I       D        I   +   +G   C  K       +
Sbjct: 159 VSLCARYPEKRFVPDGNRISW-----DSKKGFT--IPSYMISYAGMVFCEAKINDESYQS 211

Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKELQ 353
            + + +             +          G+ +V+ C  + +    I   W +   + Q
Sbjct: 212 IMYIVVVVGYRI---YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQ 268

Query: 354 QTDRISWNVTLK----GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
               ++ ++  +      K+   L +    + D GLY C   +       +  + +    
Sbjct: 269 HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 328

Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469
           F+                                                +  +V  +  
Sbjct: 329 FV-------------------------------------------AFGSGMESLVEATVG 345

Query: 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNK----HVVHIEQVK 509
           + V I  K +    P + W K    ++ ++     HV+ I +V 
Sbjct: 346 ERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVS 389

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  150 bits (380), Expect = 7e-39
 Identities = 49/276 (17%), Positives = 88/276 (31%), Gaps = 36/276 (13%)

Query: 54  YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
              V T+     + S  YK  A NK G G   ++ + +             P    +P +
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----------GPEITLQPDM 559

Query: 114 H-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM---------------SKKSIG 157
              + + + + C  + S   ++ WY+           ++               +     
Sbjct: 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSN 619

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
               +L +E+ N +  D G+Y C A +   +    +       E     AP+        
Sbjct: 620 STNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER---VAPTITGNLENQ 676

Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
               G  I++ C  S  P P++ WFK ++ + E S I +    +         I      
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR------NLTIRRVRKE 730

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
           D G Y C   +  G +       IE   E      T
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  118 bits (296), Expect = 4e-28
 Identities = 40/350 (11%), Positives = 97/350 (27%), Gaps = 68/350 (19%)

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
               + C    +      +++L+           P    +  I+  ++ T +Q    C  
Sbjct: 8   AVALWLCVETRAASVGLPSVSLD----------LPRLSIQKDILTIKANTTLQ--ITCRG 55

Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
           +   +  W       ++  ++       D  +     I   IG D+G Y+C  +     S
Sbjct: 56  QRDLDWLWPNNQSGSEQRVEVTE---CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112

Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKE 351
              + +             +        +E   K VV+ C      +   +   + E + 
Sbjct: 113 VIYVYVQDYRSPFIA--SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF 170

Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
           +   +RISW+             +        G+  C  K       + + + +      
Sbjct: 171 VPDGNRISWD-------SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV------ 217

Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
                                               V+   +  V+      + +S  + 
Sbjct: 218 ------------------------------------VVGYRIYDVVLSPSHGIELSVGEK 241

Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGI 521
           +V+ C   +     + +  E  + K  +K +V+ +         + +L  
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  107 bits (267), Expect = 2e-24
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 24/199 (12%)

Query: 13  EGEPTKQIE---ANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY-----YLAVLTIKNVQ 64
           +    + +       Q    H G L     +   TL +  + ++      + ++ +KN  
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNAS 633

Query: 65  KSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVM 122
             D G+Y  +A+++  +    V          L V    AP             G+ + +
Sbjct: 634 LQDQGDYVCLAQDRKTKKRHCVVRQ-------LTVLERVAPTITGNLENQTTSIGESIEV 686

Query: 123 ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
            C    +P P I+W++  + + +   I +   +         L I    K+D G Y C A
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR-------NLTIRRVRKEDEGLYTCQA 739

Query: 183 CNSIGESNANIALNFQGGE 201
           C+ +G +        +G +
Sbjct: 740 CSVLGCAKVEAFFIIEGAQ 758

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  189 bits (481), Expect = 6e-56
 Identities = 51/329 (15%), Positives = 107/329 (32%), Gaps = 47/329 (14%)

Query: 103 KAPRFPKKPTIH-QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
             P F +  +        ++++C V        I+WY+  + I    +            
Sbjct: 6   TGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD------- 58

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
            +  L I   +K D G Y     +  G+  + + L  +            + +       
Sbjct: 59  GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-------FKELMMEVCKKIAL 111

Query: 221 SGTLIQMKCKCSAK----------PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
           S T ++++                   +V W      ++ S ++K  V  +    +I   
Sbjct: 112 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI--- 168

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP--------------EGDPPTFIE 316
             +P   D G Y   + +        ++L+ +A  E               +        
Sbjct: 169 -NEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227

Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
            P + + Q GK + + C V   P PE+ W    K L   D  +  +  +  +      + 
Sbjct: 228 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN--LKFEAGRTA-YFTIN 284

Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                D+G Y   +KN +G   ++ T+++
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  165 bits (420), Expect = 5e-47
 Identities = 53/268 (19%), Positives = 87/268 (32%), Gaps = 26/268 (9%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
             L I    K D+G Y+VI K+  G+  S + L        +     K         I  
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120

Query: 116 DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
             + + +   V        + W      I  + R+K            + L+IN PT +D
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG-----VTGEQIWLQINEPTPND 175

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGF--------------APSFIEKPRIIPNE 220
            G Y     +        + L+ Q  +                   A      P ++  +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 235

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G  + + C     P PEV W K +K +        +  E   T      I      DSG
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN-LKFEAGRTAYFT--INGVSTADSG 292

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPE 308
            Y   VKN++G   ++  +++     PE
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVF---IPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  163 bits (414), Expect = 4e-46
 Identities = 54/312 (17%), Positives = 117/312 (37%), Gaps = 40/312 (12%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
            P F+E            + +KCK +  K    + W+K ++ +    K       +D   
Sbjct: 7   GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF----KDGIC 61

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA--EAEPEGDPPTFIEKPKIRSE 323
            ++  IT+    D+G Y   +K++ G+  + L L  EA  E   E      +    ++ +
Sbjct: 62  TLL--ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 324 QGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
              + + +   V       ++ W H G  ++ +DR+     + G++    L++ +P   D
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK--TGVTGEQI--WLQINEPTPND 175

Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ 442
            G Y   + +        + L+ +                         +Y   ++   +
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQ-------------------------AYDEAYAEFQR 210

Query: 443 FKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
            K+ ++   +   V+  +P VVTI + K + + C V     P V+W+K +  +  D+   
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270

Query: 503 VHIEQVKDVSMN 514
           +  E  +     
Sbjct: 271 LKFEAGRTAYFT 282

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  112 bits (282), Expect = 8e-28
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 22/180 (12%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
            H GS ++ SDR+ + +  +Q        L I     +D G+Y +   +       TV+L
Sbjct: 143 SHNGSAIRYSDRVKTGVTGEQIW------LQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196

Query: 89  N----------FSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIW 136
           +          F            +A      P +   Q+G  L + C +   P P++ W
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256

Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
            +  K +       +  ++           IN  +  D G Y     N  G   ++  ++
Sbjct: 257 LKNEKALASDDHCNLKFEAGRTAY----FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  183 bits (466), Expect = 1e-52
 Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 46/384 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG--SSTV 86
              G +L +        + + S L    +       K D G Y+  A   +     S T 
Sbjct: 57  KKDGLILALGMDDRKQQLPNGS-LLIQNI-LHSRHHKPDEGLYQCEASLGDSGSIISRTA 114

Query: 87  NLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVI 143
            +  +              RF  +        GD ++++C +   PMP I W +    + 
Sbjct: 115 KVMVAG-----------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163

Query: 144 EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGEN 202
              G  ++     G       L+I+     D G YRC+A N       N A +     + 
Sbjct: 164 PIPGDSRVVVLPSGA------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILS-DP 216

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           G      F+++P  +    G    ++C  S  P P   W + +++++  SK   ++   +
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
                   I++    DSGTY C V  +    +A+  L +         PP F+  P    
Sbjct: 277 ------LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-------PPWFLNHPSNLY 323

Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
                 +  EC V  KP+P + W   G  +  +D     +    +     L +    K D
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ--IVGGSN-----LRILGVVKSD 376

Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
            G Y+C  +N  G   ++  L + 
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  165 bits (420), Expect = 4e-46
 Identities = 71/426 (16%), Positives = 134/426 (31%), Gaps = 77/426 (18%)

Query: 95  GKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKM 151
                 G ++  F  +P   +   G  +++ C  E+   +P I W +   ++      + 
Sbjct: 12  HHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK 71

Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA--NIALNFQGGENGAGFAPS 209
            +   G    +  +  +   K D G Y+C A      S       +   G          
Sbjct: 72  QQLPNGSL-LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG-------PLR 123

Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
           F+ +   I    G  + +KC+    P P + W K  + +        +V       +I  
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI-- 181

Query: 270 EITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
             +     DSG YRC+ +N       N   + I ++         F+++P       GK 
Sbjct: 182 --SRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR-QLYFLQRPSNVIAIEGKD 238

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
            V+EC V   P P   W    + +Q   +  +++    +     L + +   +D+G Y C
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKK-YSLLGGSN-----LLISNVTDDDSGTYTC 292

Query: 389 NIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSV 448
            +   +  ++A+  L +                                           
Sbjct: 293 VVTYKNENISASAELTVL------------------------------------------ 310

Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV----- 503
               V P     P  +   +   +  EC V     P+V WMK  + V   +   +     
Sbjct: 311 ----VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN 366

Query: 504 -HIEQV 508
             I  V
Sbjct: 367 LRILGV 372

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  139 bits (351), Expect = 1e-36
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 31/253 (12%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
            L I  +Q  DSG Y+  A+N       +   +    + G  +        F ++P+   
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR-----QLYFLQRPSNVI 232

Query: 116 --DGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTK 172
             +G   V+EC +   P P   W +G +VI+  + +  +   S         L I+N T 
Sbjct: 233 AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN--------LLISNVTD 284

Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
           DD G Y C         +A+  L            P F+  P  +       I+ +C  S
Sbjct: 285 DDSGTYTCVVTYKNENISASAELTVLV-------PPWFLNHPSNLYAYESMDIEFECAVS 337

Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292
            KP P V W K   +V  S   +I+             I   +  D G Y+C  +NE G 
Sbjct: 338 GKPVPTVNWMKNGDVVIPSDYFQIVGGSN-------LRILGVVKSDEGFYQCVAENEAGN 390

Query: 293 SNANLNLNIEAEA 305
           + ++  L +   A
Sbjct: 391 AQSSAQLIVPKPA 403

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  114 bits (288), Expect = 5e-28
 Identities = 51/335 (15%), Positives = 105/335 (31%), Gaps = 78/335 (23%)

Query: 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPR---IIPNESGTLIQMKCKCSAK---PRP 237
           + +  S+ +     +        +  F+ +P     +   +  L      CSA+     P
Sbjct: 5   SELESSHHHHHHGGRR-------SLHFVSEPSDAVTMRGGNVLL-----NCSAESDRGVP 52

Query: 238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA-- 295
            +KW K   ++      +                +    PD G Y+C        S    
Sbjct: 53  VIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR 112

Query: 296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
              + +         P  F+ + +  +   G  V+++C+V   PMP I W    ++L   
Sbjct: 113 TAKVMVAG-------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI 165

Query: 356 DRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
                       +  +     L++   +  D+G+Y+C+ +N       N           
Sbjct: 166 PG--------DSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEA--------- 208

Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKT 471
           + R+ S+ G+  +                                  + P  V   + K 
Sbjct: 209 EVRILSDPGLHRQ------------------------------LYFLQRPSNVIAIEGKD 238

Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
            V+EC V     PS TW++ +  ++  +K    + 
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG 273

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  179 bits (455), Expect = 3e-52
 Identities = 68/310 (21%), Positives = 102/310 (32%), Gaps = 30/310 (9%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           + PRF K+P   I   G +    C     P P + W +  K +       +         
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64

Query: 161 YLLRLEINN-PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
               L I    T  D   Y C A NS+GE   +  L     +      P+    P++   
Sbjct: 65  ----LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
           E      M C  S  P PE+ WFK    V  S+    I   +        +I      D 
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL----QIESSEETDQ 176

Query: 280 GTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
           G Y C   N  G    S ANL + ++         P F   P       G  V + C   
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNV------APRFSILPMSHEIMPGGNVNITCVAV 230

Query: 337 AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
             PMP + W    ++L   D +             R  ++    +D+  Y C   +  G 
Sbjct: 231 GSPMPYVKWMQGAEDLTPEDDMPVG----------RNVLELTDVKDSANYTCVAMSSLGV 280

Query: 397 LNANLTLNIE 406
           + A   + ++
Sbjct: 281 IEAVAQITVK 290

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  153 bits (388), Expect = 1e-42
 Identities = 63/312 (20%), Positives = 99/312 (31%), Gaps = 59/312 (18%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P FI++P+     SG +    C+ +  P+P V W K  K V       I  +E      
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
            I  +  P   D   Y C  +N  GE   +  L +  E +     P     P+++  +  
Sbjct: 66  RIQPLRTP--RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF +   +  +        L+       L+++   + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA----LQIESSEETDQGKY 179

Query: 387 KCNIKNFHGE---LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           +C   N  G      ANL                                          
Sbjct: 180 ECVATNSAGVRYSSPANLY----------------------------------------- 198

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH-- 501
               V   +V P    +P    I     V I C  +    P V WM+    +  ++    
Sbjct: 199 ----VRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV 254

Query: 502 ---VVHIEQVKD 510
              V+ +  VKD
Sbjct: 255 GRNVLELTDVKD 266

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  148 bits (374), Expect = 1e-40
 Identities = 60/296 (20%), Positives = 98/296 (33%), Gaps = 43/296 (14%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
             KG  +      +    +        AVL I+ ++   D   Y+ +A+N  GE +    
Sbjct: 41  NKKGKKVNSQRFETIEFDES-----AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAK 95

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           L    ED          P     P +          M C    +P P+I W++    ++ 
Sbjct: 96  LTVLREDQLPSGF----PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE---SNANIALNFQGGEN 202
           +      K+ +        L+I +  + D G Y C A NS G    S AN+ +  Q    
Sbjct: 152 SASNGRIKQ-LRSGA----LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN--- 203

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
               AP F   P       G  + + C     P P VKW +  + +     + +      
Sbjct: 204 ---VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------ 254

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318
               +  E+TD    DS  Y C   +  G   A   + ++         P    K 
Sbjct: 255 GRNVL--ELTDV--KDSANYTCVAMSSLGVIEAVAQITVK-------SLPKAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 96.0 bits (239), Expect = 3e-22
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 29/162 (17%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
            L I++ +++D G+Y+ +A N  G   SS  NL        ++V    APRF   P  H 
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANL-------YVRVQ-NVAPRFSILPMSHE 216

Query: 115 -QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
              G  + + CV   SPMP + W QG + +     + +            R  +      
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-----------RNVLELTDVK 265

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
           D  NY C A +S+G   A   +  +         P    K  
Sbjct: 266 DSANYTCVAMSSLGVIEAVAQITVKS-------LPKAGTKHH 300

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 11/68 (16%)

Query: 48  DQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
                  +    ++     DS  Y  +A +  G   +   +        +K      P+ 
Sbjct: 247 TPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQIT-------VKSL----PKA 295

Query: 108 PKKPTIHQ 115
             K   H 
Sbjct: 296 GTKHHHHH 303

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  177 bits (449), Expect = 2e-51
 Identities = 55/327 (16%), Positives = 120/327 (36%), Gaps = 38/327 (11%)

Query: 102 GKAPRFPKKPTIHQD---GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
           G  P   K+  ++ D      L  EC  + +P  +  W +     ED+ R+++       
Sbjct: 1   GIDPFT-KEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVES----- 53

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-----FQGGENGAGFAPSFIEK 213
                ++   +   DD G Y C+  ++ G +++ +             +   F    ++ 
Sbjct: 54  KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113

Query: 214 PR-IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
              +   E G +             +V +   +K + E  K K+ ++      E+   + 
Sbjct: 114 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF--ME 171

Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD------------PPTFIEKPKI 320
                D GTY   +++    +++ + L  +   + + +             P F+E    
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231

Query: 321 RSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
                   V+++CKV   K    IVW+ + +E+   ++       K       L + +  
Sbjct: 232 EVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKH----DFKDGIC--TLLITEFS 284

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIE 406
           K+D G+Y+  +K+  G+  + L L  E
Sbjct: 285 KKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  159 bits (404), Expect = 7e-45
 Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 33/292 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                  + S RL      +++++      T K++   D G Y     + +G  SS +  
Sbjct: 37  SKDYVSTEDSPRLEVESKGNKTKM------TFKDLGMDDLGIYSCDVTDTDGIASSYLID 90

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP----TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE 144
               +         K P  P K      I + G +       + S    + +    K I 
Sbjct: 91  EEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 150

Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN-------- 196
           +  + KM      ++T ++ + +     +D G Y     +    +++ + L         
Sbjct: 151 EGPKYKMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207

Query: 197 ----FQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKES 251
               FQ  E      P F+E            + +KCK +  K    + W+K ++ +   
Sbjct: 208 KEAEFQRQEWIRKQGPHFVEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVD 266

Query: 252 SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
            K       +D    ++  IT+    D+G Y   +K++ G+  + L L  EA
Sbjct: 267 EKHDF----KDGICTLL--ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  143 bits (363), Expect = 5e-39
 Identities = 41/306 (13%), Positives = 108/306 (35%), Gaps = 42/306 (13%)

Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
           G  P   E    + ++    +  +C     P+ E  W K     ++S ++++    + + 
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVE--SKGNK 57

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA-----EPEGDPPTFIEKPK 319
            ++     D    D G Y C+V +  G +++ L    E +           P   ++   
Sbjct: 58  TKMT--FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115

Query: 320 -IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
            +   + G++       K     ++ +    KE+ +  +    + +  +   I + ++  
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYK--MHIDRNTGIIEMFMEKL 173

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
           + ED G Y   +++     ++ + L  ++ + ++      +    +              
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR-------------K 220

Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEKNTVKE 497
             P F +                    ++ +  V+++CKV ++  E  + W K++  +  
Sbjct: 221 QGPHFVE---------------YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV 265

Query: 498 DNKHVV 503
           D KH  
Sbjct: 266 DEKHDF 271

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 92.7 bits (230), Expect = 6e-21
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 40/200 (20%)

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           G  P   E      + G   +  EC     P  E  W  +    + + R+   V  KG+K
Sbjct: 1   GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLE--VESKGNK 57

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
              ++  KD   +D G+Y C++ +  G  ++ L    E+ R +                 
Sbjct: 58  T--KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA---------------- 99

Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVT 487
                    S   +F            V  +    V I +K  V    +   +     V 
Sbjct: 100 --------LSHEHKF----------PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141

Query: 488 WMKEKNTVKEDNKHVVHIEQ 507
           ++  +  + E  K+ +HI++
Sbjct: 142 YIFNEKEIFEGPKYKMHIDR 161

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  184 bits (468), Expect = 4e-51
 Identities = 70/458 (15%), Positives = 139/458 (30%), Gaps = 99/458 (21%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
            L I N+  ++SG Y   A N +   + T           +     K           +D
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI-----TVYAEPPKPFITSNNSNPVED 303

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
            D + + C  E       +W+   + +  + R+++S  +         L + + T++D G
Sbjct: 304 EDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNR-------TLTLLSVTRNDVG 355

Query: 177 NYRCNACNSIGESNAN-IALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
            Y C   N +   +++ + LN   G +    +PS+       P  + +L    C  ++ P
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY---YRPGVNLSL---SCHAASNP 409

Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGESN 294
             +  W     + + + ++ I                  I   +SG Y C   N     +
Sbjct: 410 PAQYSWLIDGNIQQHTQELFI----------------SNITEKNSGLYTCQANNSASGHS 453

Query: 295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ 354
                 I   AE    P   I     +  +    V   C+ +A+     +W+  G+ L  
Sbjct: 454 RTTVKTITVSAEL---PKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPV 509

Query: 355 TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYR 414
           + R+       G++    L + +  + D   Y C I+N      +               
Sbjct: 510 SPRLQ---LSNGNR---TLTLFNVTRNDARAYVCGIQNSVSANRS--------------- 548

Query: 415 VRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVV---PVIREVPKVVTISKKKT 471
                                             +TL V+         P   +      
Sbjct: 549 --------------------------------DPVTLDVLYGPDTPIISPPDSSYLSGAN 576

Query: 472 VVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
           + + C   S   P  +W       +     V+ I ++ 
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQHT--QVLFIAKIT 612

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  172 bits (436), Expect = 1e-46
 Identities = 64/443 (14%), Positives = 127/443 (28%), Gaps = 90/443 (20%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L I+N+ ++D+G Y +     +   +      F      +     K           +D 
Sbjct: 73  LLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFR-----VYPELPKPSISSNNSKPVEDK 126

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
           D +   C  E       +W+   + +  + R+++S  +         L + N T++D  +
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN-------RTLTLFNVTRNDTAS 178

Query: 178 YRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
           Y+C   N +      ++ LN   G        +    P      SG  + + C  ++ P 
Sbjct: 179 YKCETQNPVSARRSDSVILNVLYGP------DAPTISPLNTSYRSGENLNLSCHAASNPP 232

Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296
            +  WF      + + ++ I     +               +SG+Y C   N     N  
Sbjct: 233 AQYSWFVNGTFQQSTQELFIPNITVN---------------NSGSYTCQAHNSDTGLNRT 277

Query: 297 LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD 356
               I   AEP   P  FI        +    V + C+ + +     +W+   + L  + 
Sbjct: 278 TVTTITVYAEP---PKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSP 333

Query: 357 RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVR 416
           R+           +  L +    + D G Y+C I+N                        
Sbjct: 334 RLQL------SNDNRTLTLLSVTRNDVGPYECGIQNELSV-------------------- 367

Query: 417 SNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIEC 476
                                          +  L         P          + + C
Sbjct: 368 ------------------------DHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC 403

Query: 477 KVMSMYEPSVTWMKEKNTVKEDN 499
              S      +W+ + N  +   
Sbjct: 404 HAASNPPAQYSWLIDGNIQQHTQ 426

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  170 bits (433), Expect = 2e-46
 Identities = 75/479 (15%), Positives = 144/479 (30%), Gaps = 109/479 (22%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVN 87
           +     L +S RL    + + +R      LT+ NV ++D+  YK   +N      S +V 
Sbjct: 145 WVNNQSLPVSPRLQ---LSNGNR-----TLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
           LN           G  AP      T ++ G+ L + C   ++P     W+      + T 
Sbjct: 197 LNVLY--------GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ 248

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
                            L I N T ++ G+Y C A NS    N             A   
Sbjct: 249 ----------------ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT---VYAEPP 289

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
             FI      P E    + + C+   +      W+  ++ +  S ++++  +  + T  +
Sbjct: 290 KPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQL--SNDNRTLTL 346

Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
                  +   D G Y C ++NE    +++ + LN+         P      P     + 
Sbjct: 347 -----LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG------PDDPTISPSYTYYRP 395

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  + + C   + P  +  W  +G   Q T                 L + +  ++++GL
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------------ELFISNITEKNSGL 440

Query: 386 YKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK 445
           Y C   N     +      I +                                      
Sbjct: 441 YTCQANNSASGHSRTTVKTITVSA------------------------------------ 464

Query: 446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
                  +            +  K  V   C+  +     + W+  ++        + +
Sbjct: 465 ------ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSN 517

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  168 bits (427), Expect = 1e-45
 Identities = 70/380 (18%), Positives = 122/380 (32%), Gaps = 67/380 (17%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVN 87
           +     L +S RL   L  D         LT+ +V ++D G Y+   +N+     S  V 
Sbjct: 323 WVNNQSLPVSPRL--QLSNDNR------TLTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
           LN          P    P      T ++ G  L + C   ++P     W     + + T 
Sbjct: 375 LNVLYG------P--DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ 426

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
                            L I+N T+ + G Y C A NS    +             A   
Sbjct: 427 E----------------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS---AELP 467

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
              I      P E    +   C+  A+      W+   + +  S ++++     + T  +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLS--NGNRTLTL 524

Query: 268 ICEITDPIGP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
                  +   D+  Y C ++N    + ++ + L++         P T I  P   S   
Sbjct: 525 -----FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG------PDTPIISPPDSSYLS 573

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  + + C   + P P+  W   G   Q T                 L +      + G 
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHTQ---------------VLFIAKITPNNNGT 618

Query: 386 YKCNIKNFHGELNANLTLNI 405
           Y C + N     N ++  +I
Sbjct: 619 YACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (301), Expect = 6e-29
 Identities = 49/252 (19%), Positives = 85/252 (33%), Gaps = 41/252 (16%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ-- 115
           L I N+ + +SG Y   A N     S T           + V                  
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKT-------ITVSAELPKPSISSNNSKPVE 480

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
           D D +   C  EA      +W+   + +  + R+++S  +         L + N T++D 
Sbjct: 481 DKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGN-------RTLTLFNVTRNDA 532

Query: 176 GNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
             Y C   NS+  + ++   L+   G        + I  P      SG  + + C  ++ 
Sbjct: 533 RAYVCGIQNSVSANRSDPVTLDVLYG------PDTPIISPPDSSYLSGANLNLSCHSASN 586

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGES 293
           P P+  W       + +  + I                  I P ++GTY C V N     
Sbjct: 587 PSPQYSWRINGIPQQHTQVLFI----------------AKITPNNNGTYACFVSNLATGR 630

Query: 294 NANLNLNIEAEA 305
           N ++  +I   A
Sbjct: 631 NNSIVKSITVSA 642

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 91.6 bits (227), Expect = 1e-19
 Identities = 35/302 (11%), Positives = 76/302 (25%), Gaps = 73/302 (24%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC------------ 269
           G  + +      +      W+K +++      I  ++  Q  T                 
Sbjct: 14  GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73

Query: 270 EITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
            I + I  D+G Y  +V   +     A     +  E      P   I     +  +    
Sbjct: 74  LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-----PKPSISSNNSKPVEDKDA 128

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           V   C+ + +     +W+   + L  + R+   ++       +     +  + DT  YKC
Sbjct: 129 VAFTCEPETQD-ATYLWWVNNQSLPVSPRLQ--LSNGNRTLTLF----NVTRNDTASYKC 181

Query: 389 NIKNFHGELN-ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
             +N        ++ LN+                                          
Sbjct: 182 ETQNPVSARRSDSVILNV------------------------------------------ 199

Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
              L         P   +    + + + C   S      +W       +   +    I  
Sbjct: 200 ---LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELF--IPN 254

Query: 508 VK 509
           + 
Sbjct: 255 IT 256

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  176 bits (448), Expect = 3e-50
 Identities = 75/393 (19%), Positives = 132/393 (33%), Gaps = 56/393 (14%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVN 87
              G      +  ++    + S       L     Q SD G Y+  A+   G  SS  ++
Sbjct: 42  KKDGKSYNWQEHNAALRKDEGS-------LVFLRPQASDEGHYQCFAETPAGVASSRVIS 94

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMEC-VLEASPMPDIIWY-QGTKVI 143
              +                P K       +G    ++C +  A P P I W  + +   
Sbjct: 95  FRKTY-----------LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143

Query: 144 EDTGRIKMSKK-SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA----LNFQ 198
            +       ++ + G D  L    +      D   Y C A N+  +    +         
Sbjct: 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVT 203

Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
              +G    P      + +  ++G +  + C   + P     +FK  K V  + + +I  
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR 263

Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEK 317
           + +     ++      +  D G Y C V N  G+   + L L + +        P + +K
Sbjct: 264 HNRTSGKRLL--FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-------APKYEQK 314

Query: 318 PK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR--- 372
           P+  I  +QG   V + CKV   P P +VW H  K L             G +  +    
Sbjct: 315 PEKVIVVKQGQD-VTIPCKVTGLPAPNVVWSHNAKPLS------------GGRATVTDSG 361

Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           L +K  +  D G Y C   N HG+      + +
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  159 bits (403), Expect = 8e-44
 Identities = 71/419 (16%), Positives = 125/419 (29%), Gaps = 75/419 (17%)

Query: 97  LKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSK 153
           L V   K P    +P   + ++ +  V+EC++E +       W +  K           +
Sbjct: 1   LPVD--KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR 58

Query: 154 KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIE 212
           K  G       L    P   D G+Y+C A    G +++ +             +  +   
Sbjct: 59  KDEGS------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-------TYLIASPA 105

Query: 213 KPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKII---VNEQDDTYEII 268
           K        G   Q+ C   +A P+P + W K       ++ +      +    D     
Sbjct: 106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165

Query: 269 CEITDPIGPDSGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGD-PPTFIEKPKIRSEQ 324
             +T     D   Y C  KN   +         +    +        P      K    +
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
            G + ++ C   + PM    +F  GK++            +      RL  K    ED G
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--RLLFKTTLPEDEG 283

Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
           +Y C + N  G+                                +  S            
Sbjct: 284 VYTCEVDNGVGK-------------------------------PQKHSLK---------- 302

Query: 445 KYSVLTLSVVPVIREVPK-VVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
               LT+   P   + P+ V+ + + + V I CKV  +  P+V W      +      V
Sbjct: 303 ----LTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV 357

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  100 bits (251), Expect = 3e-23
 Identities = 38/312 (12%), Positives = 74/312 (23%), Gaps = 57/312 (18%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTY 265
            P   ++P  +         ++C      +  +  W K  K          +  + + + 
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSL 64

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
                   P   D G Y+C  +   G +     +                    K   ++
Sbjct: 65  VF----LRPQASDEGHYQCFAETPAGVASSRVISFRK---------TYLIASPAKTHEKT 111

Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISW---NVTLKGDKYHIRLEVKDP 378
              G+   ++C +  A P P I W            ++     +T   D       V   
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
              D   Y C  KN   +                  V   +  +  +    +        
Sbjct: 172 DVSDIYKYVCTAKNAAVDE----------------EVVLVEYEIKGVTKDNSGYKGE--- 212

Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
                           PV + V K +        +I C   S       + K    V  +
Sbjct: 213 ----------------PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256

Query: 499 NKHVVHIEQVKD 510
            +  +       
Sbjct: 257 PEDRITRHNRTS 268

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 53/225 (23%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKY 369
            P   ++P     +     V+EC ++      +  W  +GK     +  +     +G   
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--- 62

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
              L    P+  D G Y+C  +   G                     S            
Sbjct: 63  --SLVFLRPQASDEGHYQCFAETPAGV------------------ASSRV---------- 92

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSVTW 488
                                 + +          T  + +   ++C + + Y +P +TW
Sbjct: 93  -----------------ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW 135

Query: 489 MKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY 533
            K  +    +        ++     +  L+  IV K   S    Y
Sbjct: 136 KKRLSGADPNADVTDFDRRIT-AGPDGNLYFTIVTKEDVSDIYKY 179

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  178 bits (452), Expect = 1e-49
 Identities = 57/364 (15%), Positives = 112/364 (30%), Gaps = 39/364 (10%)

Query: 58  LTIKNVQKS-DSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPTI 113
           + IK+V+++            +     S    L       K++      P     K   +
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL-------KVRPAFKAVPVVSVSKASYL 222

Query: 114 HQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
            ++G+   + C ++         W +     +   +                L I++   
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARV 282

Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS 232
           +D G + C A N+ G +N    L         GF   F      +    G  + +  +  
Sbjct: 283 NDSGVFMCYANNTFGSANVTTTLEVV----DKGFINIFPMINTTVFVNDGENVDLIVEYE 338

Query: 233 AKPRPE-VKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
           A P+PE  +W   ++   +  +      NE +  Y     +T   G + GTY   V N  
Sbjct: 339 AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD 398

Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK 350
             +    N+ +               KP+I +       +++C     P P I W+    
Sbjct: 399 VNAAIAFNVYVNT-------------KPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPG 445

Query: 351 ELQQTDRISWNV--------TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             Q+       V             K  ++  +     +  G  +C   N  G+ +A   
Sbjct: 446 TEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFN 505

Query: 403 LNIE 406
              +
Sbjct: 506 FAFK 509

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  160 bits (405), Expect = 3e-43
 Identities = 51/455 (11%), Positives = 117/455 (25%), Gaps = 90/455 (19%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
              +  + +++G+Y    K+      +++ +          V          +    ++ 
Sbjct: 82  WITEKAEATNTGKYTCTNKHGLS---NSIYVF---------VRDPAKLFLVDRSLYGKED 129

Query: 118 DLLVMECVLEASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDG 175
           +  ++ C L    + +          +    R     K+         + I +  +    
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA--------GIMIKSVKRAYHR 181

Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
               C+     G+S  +     +         P             G    + C      
Sbjct: 182 LCLHCSVDQE-GKSVLSEKFILK-VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS 239

Query: 236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEI-ICEITDPIGPDSGTYRCNVKNEFGES 293
                 W + +   K   K     +   +        I+     DSG + C   N FG +
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 299

Query: 294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPE-IVWFHEG 349
           N    L +        D       P I +      G+ V +  + +A P PE   W +  
Sbjct: 300 NVTTTLEVV-------DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352

Query: 350 KELQ-QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
           +    + +    +      +Y   L +   +  + G Y   + N          + +   
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN-- 410

Query: 409 RFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK 468
                                                               P+++T  +
Sbjct: 411 ---------------------------------------------TK-----PEILTYDR 420

Query: 469 KKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
               +++C      EP++ W     T +  +  V+
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVL 455

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  154 bits (391), Expect = 3e-41
 Identities = 51/297 (17%), Positives = 95/297 (31%), Gaps = 39/297 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             + S  K+ ++ +S    D +     A LTI + + +DSG +   A N  G  + T  L
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQ-ATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQD-----GDLLVMECVLEASPMPDII-WYQGTKV 142
              +                  P I+       G+ + +    EA P P+   W    + 
Sbjct: 306 EVVD-----------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRT 354

Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN 202
             D        ++     Y+  L +      +GG Y     NS   +     +       
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---- 410

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQ- 261
                     KP I+  +      ++C  +  P P + W+      +  S   + V+ Q 
Sbjct: 411 ---------TKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQT 461

Query: 262 -------DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
                       +   I       +GT  C   N+ G+++A  N   +   + +  P
Sbjct: 462 LNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  122 bits (308), Expect = 4e-30
 Identities = 50/463 (10%), Positives = 114/463 (24%), Gaps = 99/463 (21%)

Query: 67  DSGEY----KVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF-PKKPTIHQD-GDLL 120
            + ++     ++ + + G    +V+                 P   P K  +    GD +
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-----------PPSIHPGKSDLIVRVGDEI 54

Query: 121 VMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC 180
            + C         + W        +  +                         + G Y C
Sbjct: 55  RLLCTDPGF----VKWTFEILDETNENKQN-------------EWITEKAEATNTGKYTC 97

Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK 240
              + +  S   I +  +                R +  +      ++C  +  P     
Sbjct: 98  TNKHGLSNS---IYVFVRD-------PAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNY 146

Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNL 299
             K  +       ++ I + +        +             C+V  E     +    L
Sbjct: 147 SLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAY----HRLCLHCSVDQEGKSVLSEKFIL 202

Query: 300 NIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRI 358
            +    +     P           + G+   + C +K         W  E  + +  ++ 
Sbjct: 203 KVRPAFKA---VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKY 259

Query: 359 -SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
            SW+      +    L +   R  D+G++ C   N  G  N   TL +            
Sbjct: 260 NSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV----------- 308

Query: 418 NKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECK 477
                                                 +   +   V ++  + V +  +
Sbjct: 309 ---------------------DKGFI-----------NIFPMINTTVFVNDGENVDLIVE 336

Query: 478 VMSMYEPS-VTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWL 519
             +  +P    W+    T  +  +     E   ++    EL L
Sbjct: 337 YEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 95.5 bits (237), Expect = 5e-21
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 38/202 (18%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
            +                +++S + Y++ L +  ++ ++ G Y  +  N +   +   N+
Sbjct: 349 IYMNRTFTDKWE-DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV 407

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ---------G 139
                   +       P        +      +++CV    P P I WY           
Sbjct: 408 Y-------VNTK----PEI----LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSA 452

Query: 140 TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
           + +  D   +  S    G    +++  I++      G   C A N +G+++A     F+G
Sbjct: 453 SVLPVDVQTLNSSGPPFG--KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510

Query: 200 GENGAGFAPSFIEKPRIIPNES 221
                        K +I P+  
Sbjct: 511 -----------NNKEQIHPHHH 521

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 81.6 bits (201), Expect = 1e-16
 Identities = 45/355 (12%), Positives = 85/355 (23%), Gaps = 94/355 (26%)

Query: 173 DDGGNYRC----NACNSIGESNANIALNFQGGENGAGFAPSFIEKPR---IIPNESGTLI 225
               ++ C          G S  +++             PS         +   +   L 
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-------PPSIHPGKSDLIVRVGDEIRL- 56

Query: 226 QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
                C+      VKW          +K    +                   ++G Y C 
Sbjct: 57  ----LCTDPG--FVKWTFEILDETNENKQNEWI------------TEKAEATNTGKYTCT 98

Query: 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVW 345
            K+    S   + + +        DP       +    +     ++ C +   P      
Sbjct: 99  NKHGLSNS---IYVFVR-------DPAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYS 147

Query: 346 FH--EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
               +GK L +  R   +      K  I ++    R        C++             
Sbjct: 148 LKGCQGKPLPKDLRFIPD-----PKAGIMIK-SVKRAYHRLCLHCSVDQEGKS------- 194

Query: 404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKV 463
                      V S K I+                V P FK          PV+      
Sbjct: 195 -----------VLSEKFIL---------------KVRPAFKAV--------PVVSVSKAS 220

Query: 464 VTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
             + + +   + C +  +      TW +E +  K   K+        +      L
Sbjct: 221 YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATL 275

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 13/80 (16%), Positives = 25/80 (31%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
            G P   I+  F      + S   +   + +           +   +I +     +G  +
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVE 490

Query: 73  VIAKNKNGEGSSTVNLNFSE 92
             A N  G+ S+  N  F  
Sbjct: 491 CKAYNDVGKTSAYFNFAFKG 510

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  171 bits (435), Expect = 2e-49
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 29/305 (9%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             +            G+     C     P     +    + I  T R+ + K+ +     
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS--- 60

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
             RL I N   +D G YRC A ++ G++  A + L             +F E       +
Sbjct: 61  --RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFK 111

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G   ++ C+ S+ P P V W   ++ V   S  +  +   ++       I +    D G
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-----ILNINKSDEG 166

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
            YRC  + E        ++ +     P     +  +K    + + G+ +   C+    P 
Sbjct: 167 IYRCEGRVEARGEIDFRDIIVIVNVPPA---ISMPQKSFNATAERGEEMTFSCRASGSPE 223

Query: 341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
           P I WF  GK +++ ++      LKG      L V++    D G Y C   N  GE    
Sbjct: 224 PAISWFRNGKLIEENEKY----ILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQ 277

Query: 401 LTLNI 405
             L +
Sbjct: 278 AFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  133 bits (337), Expect = 2e-35
 Identities = 52/272 (19%), Positives = 94/272 (34%), Gaps = 48/272 (17%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           + LTI N    D+G Y+  A +  G+               L++   +   F +  +  +
Sbjct: 60  SRLTIYNANIEDAGIYRCQATDAKGQTQEA--------TVVLEIY--QKLTFREVVSPQE 109

Query: 116 --DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
              G+   + C + +SP P + W    + +      + +  +         L+I N  K 
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN------NLQILNINKS 163

Query: 174 DGGNYRCNACN-SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES---GTLIQMKC 229
           D G YRC     + GE +    +            P  I  P+   N +   G  +   C
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIV-------NVPPAISMPQKSFNATAERGEEMTFSC 216

Query: 230 KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
           + S  P P + WF+  KL++E+ K  +  +  +        + + I  D G Y C   N+
Sbjct: 217 RASGSPEPAISWFRNGKLIEENEKYILKGSNTE------LTVRNIINSDGGPYVCRATNK 270

Query: 290 FGESNANLNLNIEAEAEPEGDPPTFIEKPKIR 321
            GE      L +               +    
Sbjct: 271 AGEDEKQAFLQV-------------FVQHHHH 289

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  124 bits (314), Expect = 2e-32
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 61/299 (20%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
                     +    G      C    +P     +    + +  + ++ +          
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
           I     +    D+G YRC   +  G++  A + L I           TF E    +  + 
Sbjct: 64  I----YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-------KLTFREVVSPQEFKQ 112

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G+   + C+V + P P + W +  +E+       + +    +     L++ +  K D G+
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-----LQILNINKSDEGI 167

Query: 386 YKCNIKNF-HGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
           Y+C  +    GE++    + I  V                                P   
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVP-------------------------------PAI- 195

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
                       + +     T  + + +   C+     EP+++W +    ++E+ K+++
Sbjct: 196 -----------SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 49/195 (25%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
                          G+     C    +P     +  +G+++  T R+     ++ +   
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRV----VVQKEGVR 59

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
            RL + +   ED G+Y+C   +  G+                   +              
Sbjct: 60  SRLTIYNANIEDAGIYRCQATDAKGQ------------------TQEATV---------- 91

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                            VL +      REV       + +   + C+V S   P+V+W+ 
Sbjct: 92  -----------------VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134

Query: 491 EKNTVKEDNKHVVHI 505
               V   + +   +
Sbjct: 135 HNEEVTTISDNRFAM 149

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +  G L++ +++    L    + L      T++N+  SD G Y   A NK GE      L
Sbjct: 229 FRNGKLIEENEKY--ILKGSNTEL------TVRNIINSDGGPYVCRATNKAGEDEKQAFL 280

Query: 89  N 89
            
Sbjct: 281 Q 281

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  174 bits (443), Expect = 2e-49
 Identities = 77/390 (19%), Positives = 135/390 (34%), Gaps = 53/390 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVN 87
                   ++     ++ +    L            +   GEY+  A+NK G   S+ + 
Sbjct: 52  TRNSRFFNIAKDPRVSMRRRSGTLVIDFR--SGGRPEEYEGEYQCFARNKFGTALSNRIR 109

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKPTIHQD---GDLLVMEC-VLEASPMPDIIWY-QGTKV 142
           L  S+           +P +PK+         G  L ++C      P P I W     + 
Sbjct: 110 LQVSK-----------SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP 158

Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESN---ANIALNFQ 198
           I    R+       G       L  +N    D   +Y CNA      +        L   
Sbjct: 159 ITQDKRVSQGHN--GD------LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVL 210

Query: 199 GGENGAGFAPSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK 255
                A   PSF+       ++    G  + ++C  S  P P++ W+K    +  S K K
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAK 269

Query: 256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
               E  +    I  +++    DSG Y C   N+ G     +++ ++A        P ++
Sbjct: 270 F---ENFNKALRITNVSEE---DSGEYFCLASNKMGSIRHTISVRVKA-------APYWL 316

Query: 316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEV 375
           ++PK      G+   + C+    P P + W   G+ LQ                   +  
Sbjct: 317 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-----TIIF 371

Query: 376 KDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +D +     +Y+CN  N HG L AN  +++
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  146 bits (371), Expect = 3e-39
 Identities = 67/416 (16%), Positives = 137/416 (32%), Gaps = 82/416 (19%)

Query: 104 APRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKV-IEDTGRIKMSKKSIGK 158
            P       K  I    D +++EC  + +P P   W +      I    R+ M ++S   
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS--- 72

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPR-I 216
            T ++        ++  G Y+C A N  G + +N   L           +P + ++    
Sbjct: 73  GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK-------SPLWPKENLDP 125

Query: 217 IPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
           +  + G  + ++C      P P + W  +        K ++      D Y     + D  
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDK-RVSQGHNGDLYFSNVMLQD-- 182

Query: 276 GPDSGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ---GGKLV 329
                 Y CN +  F  +        L +          P+F+      S Q    G  +
Sbjct: 183 --MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240

Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
           ++EC     P P+I W+ +G +L  +D+  +      + ++  L + +  +ED+G Y C 
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDL-PSDKAKF------ENFNKALRITNVSEEDSGEYFCL 293

Query: 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL 449
             N  G +   +++ ++                                           
Sbjct: 294 ASNKMGSIRHTISVRVK------------------------------------------- 310

Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
                P   + PK + ++  +   + C+     +P+V WM     ++    +    
Sbjct: 311 ---AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  102 bits (255), Expect = 1e-23
 Identities = 47/321 (14%), Positives = 96/321 (29%), Gaps = 71/321 (22%)

Query: 207 APSFIEKP----RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
            P+  ++      + P ++   I ++C+    P P   W +  +    +   ++ +  + 
Sbjct: 16  PPTITKQSAKDHIVDPRDN---ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKP- 318
            T  I            G Y+C  +N+FG    +   L +            P + ++  
Sbjct: 73  GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV---------SKSPLWPKENL 123

Query: 319 -KIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEV 375
             +  ++G   + ++C      P P I W     E   Q  R+S      GD     L  
Sbjct: 124 DPVVVQEGAP-LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS--QGHNGD-----LYF 175

Query: 376 KDPRKEDT-GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYH 434
            +   +D    Y CN +             I+       +V + +G+             
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTH-------TIQQKNPFTLKVLTTRGVA------------ 216

Query: 435 RDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNT 494
                 P F              +       + +   +++EC    +  P + W K+   
Sbjct: 217 ---ERTPSF-----------MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD 262

Query: 495 VKEDNKHVV------HIEQVK 509
           +  D            I  V 
Sbjct: 263 LPSDKAKFENFNKALRITNVS 283

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  172 bits (438), Expect = 7e-49
 Identities = 78/359 (21%), Positives = 122/359 (33%), Gaps = 52/359 (14%)

Query: 58  LTIKNV-QKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           L I N  +  D+G Y+ IA N  G   S    L F+               F  +     
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY-----------LENFKTRTRSTV 112

Query: 116 D---GDLLVMEC-VLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP 170
               G  +V+ C     S      W        +D  R    +           L I   
Sbjct: 113 SVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN--------LYIAKV 164

Query: 171 TKDDGGNYRCNACNSIGESN---ANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQ 226
            K D GNY C   N++           L  +       + P    + P  +P E GT ++
Sbjct: 165 EKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVK 224

Query: 227 MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
           ++C     P P + W +AD         +   N        I EI +    D+G+Y C  
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNG-------ILEIPNFQQEDAGSYECVA 277

Query: 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
           +N  G++ A   L   A        P +++          + V  ECK   +P P   W 
Sbjct: 278 ENSRGKNVAKGQLTFYA-------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL 330

Query: 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             G  L   DRI     ++       L +      D G+Y+C  +N HG + ++  L++
Sbjct: 331 KNGDPLLTRDRIQ----IEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  151 bits (383), Expect = 5e-41
 Identities = 78/428 (18%), Positives = 139/428 (32%), Gaps = 95/428 (22%)

Query: 102 GKAPRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTG-RIKMSKK 154
           G  P F ++P+     +  +   + + C ++ +P P I W   GT V      R  +   
Sbjct: 3   GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62

Query: 155 SIGKDTYLLRLEINNPTKD-DGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIE 212
           S         L INNP K  D G Y+C A NS G   +  A L F        +  +F  
Sbjct: 63  S---------LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-------AYLENFKT 106

Query: 213 KPR-IIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
           + R  +    G  + + C            W   +    + ++ + +  E  + Y     
Sbjct: 107 RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR-RFVSQETGNLY----- 160

Query: 271 ITDPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
           I      D G Y C V N              +        E +P   ++ P+    + G
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
             V +EC     P+P I+W     +             K +     LE+ + ++ED G Y
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKAR----RHKSNG---ILEIPNFQQEDAGSY 273

Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKY 446
           +C  +N  G+  A   L                                           
Sbjct: 274 ECVAENSRGKNVAKGQLTFY---------------------------------------- 293

Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV--- 503
                   P   ++   + ++ +++V  ECK     +P+  W+K  + +   ++  +   
Sbjct: 294 ------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347

Query: 504 --HIEQVK 509
             +I  V 
Sbjct: 348 TLNITIVN 355

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  141 bits (356), Expect = 2e-37
 Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 31/267 (11%)

Query: 44  TLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
              QD  R        L I  V+KSD G Y  +  N                     +  
Sbjct: 143 PSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202

Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
            +     + P     + G  + +EC    +P+P I+W     K I    R   S      
Sbjct: 203 YEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI--- 259

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
                 LEI N  ++D G+Y C A NS G++ A   L F          P++++    I 
Sbjct: 260 ------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------QPNWVQIINDIH 306

Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP- 277
                 +  +CK + +P+P  +W K    +    +I+I    +  T  I       +   
Sbjct: 307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNI-----TIVNLS 357

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAE 304
           D+G Y+C  +N+ G   ++  L++ AE
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  102 bits (256), Expect = 6e-24
 Identities = 51/294 (17%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 203 GAGFAPSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G G  P F+++P       +     +++ C+    P+P ++W      V      +  V 
Sbjct: 1   GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV- 59

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
             D +  I          D+GTY+C   N FG   +      EA+ +             
Sbjct: 60  -VDGSLLINNPNKT---QDAGTYQCIATNSFGTIVSR-----EAKLQFAYLENFKTRTRS 110

Query: 320 IRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEVKD 377
             S + G+ +V+ C            W        Q   R        G+     L +  
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETGN-----LYIAK 163

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
             K D G Y C + N                         N  ++G    +  R+     
Sbjct: 164 VEKSDVGNYTCVVTNTVT----------------------NHKVLGPPTPLILRNDGVMG 201

Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
              P              +  + P+ V   K  TV +EC  +    P++ W + 
Sbjct: 202 EYEP-------------KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 23/160 (14%)

Query: 40  RLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLK 98
           R     +  ++R +    +L I N Q+ D+G Y+ +A+N  G+  +   L F        
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------ 294

Query: 99  VPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
                 P + +          + +  EC     P P   W +    +    RI++ + + 
Sbjct: 295 -----QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT- 348

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                   L I      D G Y+C A N  G   ++  L+
Sbjct: 349 --------LNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  160 bits (406), Expect = 2e-46
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 7/203 (3%)

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
              AP F E+ R +     +   + CK +  P+P VKW++  K +        I   +  
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
            +++I  I      D+  Y+    N+ G  +   +L +E  A+     P  +E       
Sbjct: 61  YHQLI--IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIH--LPKTLEGMGAVHA 116

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
             G++V ++     KP P I W      +           +    +   +      ++D 
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ---VIVTRSFTSLVFPNGVERKDA 173

Query: 384 GLYKCNIKNFHGELNANLTLNIE 406
           G Y    KN  G     + L++ 
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  147 bits (374), Expect = 7e-42
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
           G  AP F ++      +      + C +   P P + WY+ G ++I D  + ++ +   G
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
                  L I + T DD   Y+  A N  G  +   +L  +         P  +E    +
Sbjct: 61  YHQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA--KIHLPKTLEGMGAV 114

Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
               G ++ +K   S KP P + W K   L+  +   ++IV     +      +      
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER---K 171

Query: 278 DSGTYRCNVKNEFGESNANLNLNIE 302
           D+G Y    KN FG     + L++ 
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  110 bits (278), Expect = 2e-28
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 16/170 (9%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y +G  +                      L I +V   D+  Y+V A N+ G  S T +L
Sbjct: 39  YRQGKEIIADGLKYRIQEFKGG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
                           P+  +         G+++ ++      P P I W +G  +I++ 
Sbjct: 95  EVEVP------AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN 148

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
           G  ++        ++   +  N   + D G Y   A N  G     + L+
Sbjct: 149 GHYQVIV----TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  101 bits (253), Expect = 6e-25
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P F E+ +  + +      + CKV   P P + W+ +GKE+            KG  + 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
            +L +     +D  +Y+    N  G ++   +L +E                        
Sbjct: 63  -QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE------------------------ 97

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                            V     +P   E    V   + + V I+       +P +TW K
Sbjct: 98  -----------------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140

Query: 491 EKNTVKEDNKHVVHIE 506
            ++ +  +  + V + 
Sbjct: 141 GQDLIDNNGHYQVIVT 156

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
           ++ P  +E  + + +  +    + CKV    +P V W ++   +  D   
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLK 51

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  165 bits (419), Expect = 3e-46
 Identities = 67/360 (18%), Positives = 112/360 (31%), Gaps = 53/360 (14%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
           +    V+  D+G Y+ +A N  G   S   +L F                F  +      
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-----------LQEFSAEERDPVK 112

Query: 117 ---GDLLVMECVLEAS-PMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
              G  ++  C      P     W              +   ++ G       L I    
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN------LYIAKTE 166

Query: 172 KDDGGNYRCNACNSIGESNANIALNF-----QGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
             D GNY C A + I     ++   F        +          + P      +G ++ 
Sbjct: 167 ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVT 226

Query: 227 MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV 286
           ++C     P P++KW K D                 +    I  +      D GTY C  
Sbjct: 227 LECFAFGNPVPQIKWRKLDGSQ-------TSKWLSSEPLLHIQNVDFE---DEGTYECEA 276

Query: 287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF 346
           +N  G       + I A        P +++         G  +   C    KP P + W 
Sbjct: 277 ENIKGRDTYQGRIIIHA-------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329

Query: 347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            +G+ L   +RI  +           L       ED+G+Y+C  +N HG + A+  L ++
Sbjct: 330 RDGQPLASQNRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  144 bits (364), Expect = 2e-38
 Identities = 67/427 (15%), Positives = 121/427 (28%), Gaps = 97/427 (22%)

Query: 104 APRFPKKPT-----IHQDGDLLVMECVLEASPMPDIIWYQ-GTKV-IEDTGRIKMSKKSI 156
            P F ++P           + + + C   A+P     W   GT++ +    R ++     
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD- 62

Query: 157 GKDTYLLRLEINNPTKD-DGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKP 214
                   L I+NP K  D G+Y+C A N+ G   +  A L F              E+ 
Sbjct: 63  --------LVISNPVKAKDAGSYQCVATNARGTVVSREASLRF------GFLQEFSAEER 108

Query: 215 RIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK-LVKESSKIKIIVNEQDDTYEIICEIT 272
             +    G  +   C      P    +W   +      +   + +     + Y     I 
Sbjct: 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY-----IA 163

Query: 273 DPIGPDSGTYRCNVKNEFGESNAN-----LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
                D G Y C   +       +       L++ AE   +  P    + P       G+
Sbjct: 164 KTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQ 223

Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK 387
           +V +EC     P+P+I W         +  +S             L +++   ED G Y+
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDGSQ-TSKWLSSEPL---------LHIQNVDFEDEGTYE 273

Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
           C  +N  G       + I                                          
Sbjct: 274 CEAENIKGRDTYQGRIIIH----------------------------------------- 292

Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV---- 503
                  P   +V           +   C       P+V W+++   +   N+  V    
Sbjct: 293 -----AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE 347

Query: 504 -HIEQVK 509
               ++ 
Sbjct: 348 LRFSKLV 354

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  142 bits (360), Expect = 7e-38
 Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 33/273 (12%)

Query: 37  MSDRLSSTLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94
           + +   + +  D  R        L I   + SD G Y   A +     + +V   FS+  
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196

Query: 95  GKLKVPGGKAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
              +     AP    K         G ++ +EC    +P+P I W +        G    
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK------LDGSQTS 250

Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
              S         L I N   +D G Y C A N  G       +            P ++
Sbjct: 251 KWLSSEP-----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------QPDWL 298

Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
           +       + G+ ++  C  S KPRP V+W +  + +   ++I++               
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRF---- 350

Query: 272 TDPIGP-DSGTYRCNVKNEFGESNANLNLNIEA 303
              +   DSG Y+C  +N+ G   A+  L ++A
Sbjct: 351 -SKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  100 bits (251), Expect = 3e-23
 Identities = 38/290 (13%), Positives = 68/290 (23%), Gaps = 52/290 (17%)

Query: 206 FAPSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           + P F E+P         +   + + C+  A P    +W      +K     +  +    
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL--VA 60

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
               I   +      D+G+Y+C   N  G   +      EA            E+     
Sbjct: 61  GDLVISNPVKA---KDAGSYQCVATNARGTVVSR-----EASLRFGFLQEFSAEERDPVK 112

Query: 323 EQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
              G  V+  C      P     W                V+         L +      
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN----LYIAKTEAS 168

Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
           D G Y C   +    +  ++                            + +        P
Sbjct: 169 DLGNYSCFATSHIDFITKSVFSKF---------------------SQLSLAAEDARQYAP 207

Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
                         +  + P        + V +EC       P + W K 
Sbjct: 208 -------------SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL 244

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  162 bits (411), Expect = 1e-45
 Identities = 59/338 (17%), Positives = 108/338 (31%), Gaps = 48/338 (14%)

Query: 102 GKAPRFPKKPTIHQD------GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKK 154
           G+A   P      Q+      GD + + C      PM   +W +    +  + R+ +  +
Sbjct: 2   GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61

Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES---NANIALNFQGGENGAG------ 205
                     L++ N + +D G Y C    +       +  +      G++  G      
Sbjct: 62  R---------LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAED 112

Query: 206 -----FAPSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
                 AP +    R+        +   ++ +C  +  P P + W K  +  +   +I  
Sbjct: 113 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172

Query: 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE 316
           I         ++  +      D G Y C V+N+FG       L++   +     P     
Sbjct: 173 IKLRHQQWSLVMESVVPS---DRGNYTCVVENKFGSIRQTYTLDVLERSPHR--PILQAG 227

Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE----GKELQQTDRISWNVTLKGDKYHIR 372
            P  ++   G  V   CKV +   P I W       G ++         V          
Sbjct: 228 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287

Query: 373 -----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                L + +   ED G Y C   N  G  + +  L +
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  132 bits (334), Expect = 7e-35
 Identities = 49/288 (17%), Positives = 83/288 (28%), Gaps = 31/288 (10%)

Query: 45  LVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL----------NFSEED 94
           LV  +  L     L + N    DSG Y    +                         E++
Sbjct: 50  LVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDE 109

Query: 95  GKLKVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
            +       AP + +   +          + +   C    +P P I W +  +      R
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169

Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAP 208
           I   K    + +    L + +    D GNY C   N  G       L+    E       
Sbjct: 170 IGGIKLRHQQWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHRPI 223

Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD----KLVKESSKIKIIVNEQDDT 264
                P       G+ ++  CK  +  +P ++W K        V       + V +    
Sbjct: 224 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA 283

Query: 265 YEIICE-----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
                E     + +    D+G Y C   N  G S+ +  L +    E 
Sbjct: 284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  126 bits (317), Expect = 2e-32
 Identities = 53/332 (15%), Positives = 91/332 (27%), Gaps = 73/332 (21%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
                +   +   SG  +++ C      P     W K    +  S ++ +          
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV------GPQR 62

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD--------------PP 312
           +  ++ +    DSG Y C  +              +A +  + +               P
Sbjct: 63  L--QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120

Query: 313 TFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
            +    ++  +         V   C     P P I W   G+E +   RI          
Sbjct: 121 YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
               L ++     D G Y C ++N  G +    TL+                       V
Sbjct: 181 ---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD-----------------------V 214

Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
             RS HR                    +   +P   T      V   CKV S  +P + W
Sbjct: 215 LERSPHR------------------PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256

Query: 489 MK--EKNTVKEDNKHVVHIEQVKDVSMNFELW 518
           +K  E N  K       ++  +K    N    
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 93.5 bits (232), Expect = 4e-21
 Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 21/178 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G   +   R+    ++ Q        L +++V  SD G Y  + +NK G    T  L
Sbjct: 158 LKNGREFRGEHRIGGIKLRHQQW-----SLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-----QGTK 141
           +  E          +       P       G  +   C + +   P I W       G+K
Sbjct: 213 DVLER------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 266

Query: 142 VIEDTGRIKMSKKSIGKDTYLLR---LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
           V  D        K+ G +T       L ++N T +D G Y C A NSIG S+ +  L 
Sbjct: 267 VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 30/192 (15%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
           P     + +      G  V + C      PM   VW  +G  L  ++R+           
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL--------VG 59

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
             RL+V +   ED+G Y C  +                +     RV              
Sbjct: 60  PQRLQVLNASHEDSGAYSCRQRLTQRV-----------LCHFSVRVTDAPSSGDDEDGED 108

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                   +  P + +            R   K++ +    TV   C       PS++W+
Sbjct: 109 EAEDTGVDTGAPYWTR----------PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158

Query: 490 KEKNTVKEDNKH 501
           K     + +++ 
Sbjct: 159 KNGREFRGEHRI 170

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  166 bits (421), Expect = 2e-45
 Identities = 59/492 (11%), Positives = 128/492 (26%), Gaps = 109/492 (22%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             K S L             Q+R   +  + I  + ++ +GEY +  +++    +    +
Sbjct: 83  VFKHSSLNCQPH-----FDLQNR--GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
           +                   ++P   +  +   + C+ E+ P P + W           +
Sbjct: 136 SIRN----------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL------CDSQ 179

Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFA 207
            +  K+   +   +++ E     +  G + RC A N +G     +  ++           
Sbjct: 180 GESCKE---ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------- 228

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
                 P++     G  + ++CK         + W   +K ++E +  ++     + T  
Sbjct: 229 TPQTTLPQLFLKV-GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287

Query: 267 IIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            I    ++     D+G Y C+      +S     + I  +              +     
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNS-----SEDYEID 339

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
             +      + KA P     W    K      +   N           +      K   G
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS--------ISKFCNHKHQPG 391

Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
            Y  + +N   +     TLNI                                       
Sbjct: 392 EYIFHAENDDAQFTKMFTLNIR-------------------------------------- 413

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
                     P +                  C       PS TW K  +      + +  
Sbjct: 414 --------RKPQVLAEA--------SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITE 457

Query: 505 IEQVKDVSMNFE 516
               +  +    
Sbjct: 458 GVWNRKANRKVF 469

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  156 bits (396), Expect = 6e-42
 Identities = 52/362 (14%), Positives = 99/362 (27%), Gaps = 56/362 (15%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
               K + +    + +  A+N+ G   + +          + +     P+        + 
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFT--------IDLNQ--TPQTTLPQLFLKV 241

Query: 117 GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL-LRLEINNPTKDD 174
           G+ L + C  +  +    + W    K +E+    +MS  S  +     L   +++  ++D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE---KPRIIPNESGTLIQMKCKC 231
            G Y C++     +S     +              FI           +         + 
Sbjct: 302 TGYYTCSSSKHPSQS---ALVTIV--------EKGFINATNSSEDYEIDQYEEFCFSVRF 350

Query: 232 SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
            A P+    W  + K      K        D+ Y I            G Y  + +N+  
Sbjct: 351 KAYPQIRCTWTFSRKSFPCEQK------GLDNGYSIS--KFCNHKHQPGEYIFHAENDDA 402

Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
           +      LNI               KP++ +E         C     P+P   W     +
Sbjct: 403 QFTKMFTLNI-------------RRKPQVLAE--ASASQASCFSDGYPLPSWTWKKCSDK 447

Query: 352 LQQTDRI----SWNVTLKGDKYH---IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
                       WN       +        +         L KC   N  G     + LN
Sbjct: 448 SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

Query: 405 IE 406
             
Sbjct: 508 SP 509

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  151 bits (381), Expect = 7e-40
 Identities = 50/455 (10%), Positives = 111/455 (24%), Gaps = 91/455 (20%)

Query: 62  NVQKSDSGEYKVI----AKNKNGEGSSTVNLNFSEEDGKLKV-PGGKAPRFPKKPTIH-- 114
                D    K +      N +  G S+     SE    L      ++     +      
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
                + ++ +++A      +W      +       +  + +        + I   T+  
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS------MVILKMTETQ 114

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
            G Y     +          ++ +           +  +             + C   + 
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRN-------TLLYTLRRPYFRKMENQDA-LVCISESV 166

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
           P P V+W   D   +           ++    +  E            RC  +NE G   
Sbjct: 167 PEPIVEWVLCDSQGESCK--------EESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218

Query: 295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQ 353
                 I+    P+   P    K        G+ + + CK         + W  E K L+
Sbjct: 219 TR-LFTIDLNQTPQTTLPQLFLKV-------GEPLWIRCKAVHVNHGFGLTWELENKALE 270

Query: 354 QTDRISWNVTLKGDKYHIR--LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
           + +    +               V    + DTG Y C+      + +A +T         
Sbjct: 271 EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVT--------- 320

Query: 412 KYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTISKK 469
                                               ++       I      +   I + 
Sbjct: 321 ------------------------------------IV---EKGFINATNSSEDYEIDQY 341

Query: 470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
           +      +  +  +   TW   + +   + K + +
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  134 bits (339), Expect = 4e-34
 Identities = 37/299 (12%), Positives = 74/299 (24%), Gaps = 50/299 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             +   L+  +    +       +  +    + +V ++D+G Y   +         +  +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
              E+        G                +        +A P     W    K      
Sbjct: 320 TIVEK--------GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ 371

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
           +   +  S         +      K   G Y  +A N   +      LN +         
Sbjct: 372 KGLDNGYS---------ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR--------- 413

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-----IKIIVNEQD 262
                KP+++     +  Q  C     P P   W K        ++     +      + 
Sbjct: 414 ----RKPQVL--AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRK 467

Query: 263 DTYEIICEITDPIGP--DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
              + +   T  +         +C   N  G S   + LN          P  FI+   
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG-------PFPFIQDGG 519

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  110 bits (275), Expect = 7e-26
 Identities = 33/347 (9%), Positives = 88/347 (25%), Gaps = 80/347 (23%)

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
           L+  + N+ +     +Y   + +         AL  Q        +   + +   +  + 
Sbjct: 14  LINHKNNDSSVGKSSSYPMVSESPED---LGCALRPQ--------SSGTVYEAAAVEVDV 62

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
              I ++    A       W      +       +      +   +   I       +G 
Sbjct: 63  SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-----QNRGVVSMVILKMTETQAGE 117

Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP 341
           Y   +++E         ++I        +   +  +     +   +   + C  ++ P P
Sbjct: 118 YLLFIQSEATNYTILFTVSIR-------NTLLYTLRRPYFRKMENQ-DALVCISESVPEP 169

Query: 342 EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL 401
            + W     + +     S           ++ E K   +      +C  +N  G      
Sbjct: 170 IVEWVLCDSQGESCKEES--------PAVVKKEEKVLHELFGTDIRCCARNELGR----- 216

Query: 402 TLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP 461
                                                     +   + T+ +    +   
Sbjct: 217 ------------------------------------------ECTRLFTIDLNQTPQTTL 234

Query: 462 KVVTISKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIEQ 507
             + +   + + I CK + +     +TW  E   ++E N   +    
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  163 bits (414), Expect = 3e-45
 Identities = 45/358 (12%), Positives = 104/358 (29%), Gaps = 50/358 (13%)

Query: 54  YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTI 113
            +  + I  + ++ +GEY +  +++    +    ++                   ++P  
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN----------TLLYTLRRPYF 150

Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
            +  +   + C+ E+ P P + W           + +  K+            ++     
Sbjct: 151 RKMENQDALVCISESVPEPIVEWVL------CDSQGESCKEESPAVVKKEEKVLHE---L 201

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-CS 232
            G + RC A N +G     +               +       +  + G  + ++CK   
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDL--------NQTPQTTLPQLFLKVGEPLWIRCKAVH 253

Query: 233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC--EITDPIGPDSGTYRCNVKNEF 290
                 + W   +K ++E +  ++     + T   I    ++     D+G Y C+     
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313

Query: 291 GESNANLNLNIEAEAEPEGDPPTFI--EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
            +S A + +          +          +       +      + KA P     W   
Sbjct: 314 SQS-ALVTIV---------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS 363

Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            K      +   N           +      K   G Y  + +N   +     TLNI 
Sbjct: 364 RKSFPCEQKGLDN--------GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  154 bits (391), Expect = 6e-42
 Identities = 54/467 (11%), Positives = 119/467 (25%), Gaps = 100/467 (21%)

Query: 62  NVQKSDSGEYKVI----AKNKNGEGSSTVNLNFSEEDGKLKV-PGGKAPRF--PKKPTIH 114
                D    K +      N +  G S+     SE    L      ++            
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
                + ++ +++A      +W      +       +  + +        + I   T+  
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS------MVILKMTETQ 114

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSA 233
            G Y     +          ++ +           +   +P     E+   +   C   +
Sbjct: 115 AGEYLLFIQSEATNYTILFTVSIRN-------TLLYTLRRPYFRKMENQDALV--CISES 165

Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT-YRCNVKNEFGE 292
            P P V+W   D   +            +++  ++ +    +    GT  RC  +NE G 
Sbjct: 166 VPEPIVEWVLCDSQGESCK---------EESPAVVKKEEKVLHELFGTDIRCCARNELGR 216

Query: 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGKE 351
               L               T          + G+ + + CK V       + W  E K 
Sbjct: 217 ECTRLFTIDL--------NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268

Query: 352 LQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
           L++ +   +S   T +     +   V    + DTG Y C+      +             
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS------------ 316

Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTIS 467
                                                +++T+     I      +   I 
Sbjct: 317 -------------------------------------ALVTIVEKGFINATNSSEDYEID 339

Query: 468 KKKTVVIECKVMSMYEPSVTWMKEKNTVKE-----DNKHVVHIEQVK 509
           + +      +  +  +   TW   + +        DN + +      
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  116 bits (291), Expect = 3e-28
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 34/248 (13%)

Query: 61  KNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLL 120
           K + +    + +  A+N+ G   + +      +           P+        + G+ L
Sbjct: 196 KVLHELFGTDIRCCARNELGRECTRLFTIDLNQ----------TPQTTLPQLFLKVGEPL 245

Query: 121 VMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK-DTYLLRLEINNPTKDDGGNY 178
            + C  +  +    + W    K +E+    +MS  S  +    +L   +++  ++D G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 179 RCNACNSIGESNANIALNFQGGENGAGFAPSFI---EKPRIIPNESGTLIQMKCKCSAKP 235
            C++     +S     +              FI           +         +  A P
Sbjct: 306 TCSSSKHPSQS---ALVTIVE--------KGFINATNSSEDYEIDQYEEFCFSVRFKAYP 354

Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
           +    W  + K      K        D+ Y I            G Y  + +N+  +   
Sbjct: 355 QIRCTWTFSRKSFPCEQK------GLDNGYSIS--KFCNHKHQPGEYIFHAENDDAQFTK 406

Query: 296 NLNLNIEA 303
              LNI +
Sbjct: 407 MFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 84.7 bits (209), Expect = 8e-18
 Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 19/171 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             +   L+  +    +       +  +    + +V ++D+G Y   +         +  +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALV 319

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
                   +   G        +       +        +A P     W    K      +
Sbjct: 320 T-------IVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372

Query: 149 IKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
              +  S         +      K   G Y  +A N   +      LN + 
Sbjct: 373 GLDNGYS---------ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  156 bits (395), Expect = 7e-45
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 10/200 (5%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP+F +  + +    G+    +   S  P PEV WF+  +++  S+   + ++  D   +
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
           +   I      +SG Y     N  G++ +   L ++AE  P    P F+++ +  + + G
Sbjct: 65  LT--IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP----PNFVQRLQSMTVRQG 118

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
             V ++ +V   P P + ++ +G E+Q +      ++ +GD Y   L + +   ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ--ISQEGDLY--SLLIAEAYPEDSGTY 174

Query: 387 KCNIKNFHGELNANLTLNIE 406
             N  N  G   +   L ++
Sbjct: 175 SVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  136 bits (344), Expect = 1e-37
 Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           +AP F +     +  +G     E  +   P+P++ W++  +VI  +    +         
Sbjct: 4   QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
              +L I   TK + G Y   A N  G++ +   L  +         P+F+++ + +   
Sbjct: 64  ---KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----PPNFVQRLQSMTVR 116

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G+ ++++ + +  P P VK+++    ++ S   +I   ++ D Y ++  I +    DSG
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--QEGDLYSLL--IAEAYPEDSG 172

Query: 281 TYRCNVKNEFGESNANLNLNIE 302
           TY  N  N  G + +   L ++
Sbjct: 173 TYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  112 bits (281), Expect = 8e-29
 Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 19/172 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +  G ++  S      +     R    A LTI  V K++SG Y + A N +G+ +ST  L
Sbjct: 40  FRDGQVISTSTLPGVQISFSDGR----AKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
               E           P F ++      + G  + ++  +   P P + +Y+    I+ +
Sbjct: 96  LVKAET--------APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS 147

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
              ++S     ++  L  L I     +D G Y  NA NS+G + +   L  Q
Sbjct: 148 LDFQIS-----QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  104 bits (262), Expect = 3e-26
 Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 45/196 (22%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            PTF +  +      G     E  +   P+PE+ WF +G+ +  +      ++    +  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA- 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
            +L +    K ++G Y     N  G+  +   L                           
Sbjct: 64  -KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-------------------------- 96

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                            V   +  P   +  + +T+ +   V ++ +V  +  P V + +
Sbjct: 97  -----------------VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139

Query: 491 EKNTVKEDNKHVVHIE 506
           +   ++      +  E
Sbjct: 140 DGAEIQSSLDFQISQE 155

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 9/58 (15%), Positives = 19/58 (32%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
           P   +  + V + +  T   E  +     P V+W ++   +       V I      +
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  154 bits (391), Expect = 4e-43
 Identities = 62/312 (19%), Positives = 104/312 (33%), Gaps = 33/312 (10%)

Query: 103 KAPRF---PKKPTIHQDGDLLVMECVLEASPM-PDIIWY--QGTKVIEDTGRIKMSKKSI 156
           +  +    P +  I   G+     C +       DI W+   G K+  +  RI +     
Sbjct: 1   RVLQVDIVPSQGEISV-GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPR 215
              T    L I N   DD G Y+C      G    A + +              F   P 
Sbjct: 60  DSST----LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPT 108

Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
               + G    + C   +   P + W    + V     ++ IV    + Y  I  I    
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKT- 165

Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE--QGGKLVVMEC 333
             D GTYRC  +          ++ +         PPT   +  I +     G+ V + C
Sbjct: 166 --DEGTYRCEGRILARGEINFKDIQVIVNV-----PPTVQARQSIVNATANLGQSVTLVC 218

Query: 334 KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
                P P + W  +G+ ++  +          D     L +++  K D   Y C  +N 
Sbjct: 219 DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE--LTIRNVDKNDEAEYVCIAENK 276

Query: 394 HGELNANLTLNI 405
            GE +A++ L +
Sbjct: 277 AGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  128 bits (323), Expect = 1e-33
 Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 31/253 (12%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
            LTI N    D+G YK +   ++G  S             +K+       F   PT    
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEA--------TVNVKIFQ--KLMFKNAPTPQEF 112

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
           ++G+  V+ C + +S  P IIW    + +     ++    S         L+I    K D
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY------LQIRGIKKTD 166

Query: 175 GGNYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPN--ESGTLIQMKCK 230
            G YRC          +  +I +            P+   +  I+      G  + + C 
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVN-------VPPTVQARQSIVNATANLGQSVTLVCD 219

Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
               P P + W K  + ++   +        DD+ E+   I +    D   Y C  +N+ 
Sbjct: 220 ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT--IRNVDKNDEAEYVCIAENKA 277

Query: 291 GESNANLNLNIEA 303
           GE +A+++L + A
Sbjct: 278 GEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  109 bits (273), Expect = 7e-27
 Identities = 51/310 (16%), Positives = 106/310 (34%), Gaps = 63/310 (20%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKI-IVNEQDDTY 265
                 P       G      C+ +   +  ++ WF  +      ++ +I +V   DD+ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            +   I +    D+G Y+C V  E G    A +N+ I            F   P  +  +
Sbjct: 63  TLT--IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFK 113

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
            G+  V+ C V +   P I+W H+G+++     + + V          L+++  +K D G
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEG 168

Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
            Y+C  +                                  G +  +             
Sbjct: 169 TYRCEGRILAR------------------------------GEINFKDIQ---------- 188

Query: 445 KYSVLTLSVVPVIREVPKVV--TISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
               + ++V P ++    +V  T +  ++V + C      EP+++W K+   ++ + +  
Sbjct: 189 ----VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD 244

Query: 503 VHIEQVKDVS 512
                  D S
Sbjct: 245 EKHIFSDDSS 254

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G  ++  +      +         + LTI+NV K+D  EY  IA+NK GE  ++++L
Sbjct: 231 TKDGEPIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286

Query: 89  N 89
            
Sbjct: 287 K 287

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  147 bits (373), Expect = 1e-41
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           +G AP   ++ + +  + G   Q+ C+   +P P++KW++  K + +S K K+  + +  
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH 63

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
           T      +      D G Y C   NE GE   +  L ++A        P +  K K    
Sbjct: 64  TL----TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA---TPQFHPGYPLKEKYYGA 116

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKED 382
            G   + +      +P+P + WFH  K LQ ++ I    T++  +++  L +K+  RK  
Sbjct: 117 VGST-LRLHVMYIGRPVPAMTWFHGQKLLQNSENI----TIENTEHYTHLVMKNVQRKTH 171

Query: 383 TGLYKCNIKNFHGELNANLTLNIE 406
            G YK  + N  G ++A L + I+
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  139 bits (351), Expect = 1e-38
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 99  VPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
              G+AP   K+      + G+   + C +   P+PDI WY+  K +  + + KMS    
Sbjct: 2   AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMS---- 57

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
             D     L +    ++D G Y C A N +GE   +  L  Q         P F     +
Sbjct: 58  -SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-------TPQFHPGYPL 109

Query: 217 IPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
                   G+ +++      +P P + WF   KL++ S  I I   E      +   +  
Sbjct: 110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMK-NVQR 168

Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIE 302
                +G Y+  + N FG  +A L++ I+
Sbjct: 169 KT--HAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  106 bits (267), Expect = 7e-27
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 18/171 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y  G  L  S +    +  D         LT+   ++ D G Y  IA N+ GE  ++  L
Sbjct: 42  YRFGKELIQSRKY--KMSSDGR----THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR 148
                      P        K+      G  L +  +    P+P + W+ G K+++++  
Sbjct: 96  LLQAT------PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEN 149

Query: 149 IKMSKKSIGKDTYLLRLEINNPT-KDDGGNYRCNACNSIGESNANIALNFQ 198
           I +         +   L + N   K   G Y+    N  G  +A + +  Q
Sbjct: 150 ITIE-----NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  102 bits (257), Expect = 2e-25
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 47/197 (23%)

Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
            G+ P   ++ K  + + G+   + C++  +P+P+I W+  GKEL Q+ +    ++  G 
Sbjct: 4   SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYK--MSSDGR 61

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
            +   L V    +ED G+Y C   N  GE+  +  L ++                     
Sbjct: 62  TH--TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ--------------------- 98

Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVT 487
                        PQF                + +    +   T+ +    +    P++T
Sbjct: 99  -----------ATPQFHP-----------GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136

Query: 488 WMKEKNTVKEDNKHVVH 504
           W   +  ++      + 
Sbjct: 137 WFHGQKLLQNSENITIE 153

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
           +H   LL+ S+ ++    +  +       L +KNVQ K+ +G+YKV   N  G   + ++
Sbjct: 138 FHGQKLLQNSENITIENTEHYT------HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191

Query: 88  LNFSEE 93
           +   ++
Sbjct: 192 VEIQDK 197

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           P IR+  K VT    +   + C+++    P + W +    + +  K+ +  +
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD 59

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  152 bits (386), Expect = 2e-41
 Identities = 64/382 (16%), Positives = 130/382 (34%), Gaps = 58/382 (15%)

Query: 44  TLVQDQSRLYYLAV---LTIKNVQKSD------SGEYKVIAKNKNGE-GSSTVNLNFSEE 93
           T V D   L  ++    L     +  D      +  Y  +A+N+ G   S  V++     
Sbjct: 44  TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV- 102

Query: 94  DGKLKVPGGKAPRFPKKP---TIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTG 147
                     A  +        + + G+  V++C++ +     +  + W+   +     G
Sbjct: 103 ----------AQYYEADVNKEHVIR-GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG 151

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDG-GNYRCNACNSIGES---NANIALNFQGGENG 203
                K  +        L I     +DG  +Y+C   + +      +A            
Sbjct: 152 AEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           +    +     + +       I + C     P P  +W+K  +       +  ++N++  
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAV--VLNDRVK 266

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
                  I D +  DSG Y C V N  G  +    L + A       P +    P  ++ 
Sbjct: 267 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-------PLSAKIDPPTQTV 319

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
             G+  V  C+    P+  + W  +GK +  ++ +              L ++  +KED 
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------------LRIESVKKEDK 365

Query: 384 GLYKCNIKNFHGELNANLTLNI 405
           G+Y+C ++N      A+  L +
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  139 bits (351), Expect = 1e-36
 Identities = 73/430 (16%), Positives = 119/430 (27%), Gaps = 93/430 (21%)

Query: 103 KAPRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
           K P F   P       +     +EC    +PMP+IIW       + D   ++      GK
Sbjct: 2   KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD-GK 60

Query: 159 DTYLLRLEINNPTKDDG------GNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSF 210
                 L       +D         Y C A N  G   S  ++ +           A  +
Sbjct: 61  ------LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRA-------VVAQYY 106

Query: 211 IEKPRIIPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
                      G    +KC      A     V W   ++      +      E D  Y +
Sbjct: 107 EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE------ENYFPGAEYDGKYLV 160

Query: 268 ICE----ITDPIGPDS-GTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPK 319
           +      I +    D   +Y+C  K+        +A     +  E      P T     K
Sbjct: 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220

Query: 320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
                    + + C  +  P P   W+   +   +   +  N  +K       L +KD  
Sbjct: 221 PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAV 278

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
            ED+G Y C + N  G  +    L +                                  
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVT--------------------------------- 305

Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
                             +  P   T+   +  V  C+       +V+WMK+   +    
Sbjct: 306 -------------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352

Query: 500 KHVVHIEQVK 509
             V+ IE VK
Sbjct: 353 -SVLRIESVK 361

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 83.1 bits (205), Expect = 2e-17
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 28/157 (17%)

Query: 42  SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
              +V +         L IK+    DSG+Y  +  N  G  S    L  +          
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--------- 306

Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
                    P       G   V  C    +P+  + W +  K I  +  +          
Sbjct: 307 --PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV---------- 354

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                L I +  K+D G Y+C   N    + A+  L 
Sbjct: 355 -----LRIESVKKEDKGMYQCFVRNDRESAEASAELK 386

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  140 bits (355), Expect = 5e-39
 Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 4/201 (1%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P F   P      SG +    C+ +  PRP++ W K  K V       I  ++   +  
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
            I  +  P   D   Y C   N  GE + +  L +  E +     PT    P+++  +  
Sbjct: 66  RIQPLRTP--RDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           +   M C     P PEI WF +   +  ++       L+ +     L+++   + D G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG-ALQIEQSEESDQGKY 182

Query: 387 KCNIKNFHGE-LNANLTLNIE 406
           +C   N  G   +A   L + 
Sbjct: 183 ECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  121 bits (306), Expect = 4e-32
 Identities = 47/219 (21%), Positives = 71/219 (32%), Gaps = 16/219 (7%)

Query: 103 KAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
             PRF + P       G +    C     P P I+W +  K + +     +         
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD--GSG 62

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
            +LR++    T  D   Y C A N++GE + +  L     +      P+    P++   E
Sbjct: 63  SVLRIQ-PLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-IKIIVNEQDDTYEIICEITDPIGPDS 279
                 M C  S  P PE+ WFK    V  S+   +I     +    +   I      D 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQ--IEQSEESDQ 179

Query: 280 GTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEK 317
           G Y C   N  G    A  NL +                
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRG-------TKHHHHH 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 41/191 (21%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP F   P  ++   G +    C+    P P+IVW  +GK++                  
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
               ++ P   D  +Y+C   N  GE++ +  L +     I                   
Sbjct: 66  RIQPLRTP--RDEAIYECVASNNVGEISVSTRLTVLREDQIP------------------ 105

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                                   P I   P++  + + +T  + C      +P +TW K
Sbjct: 106 ---------------------RGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK 144

Query: 491 EKNTVKEDNKH 501
           +   V   N +
Sbjct: 145 DFLPVDTSNNN 155

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQ-KSDSGEYKVIAKNKNGEGSSTVN 87
             KG  +  + R       D S     +VL I+ ++   D   Y+ +A N  GE S +  
Sbjct: 41  NKKGKKVS-NQRFEVIEFDDGS----GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR 95

Query: 88  LNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED 145
           L    ED   +      P     P   + +      M C    +P P+I W++    ++ 
Sbjct: 96  LTVLREDQIPRGF----PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT 151

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
           +      K+   +    L+  I    + D G Y C A NS G  
Sbjct: 152 SNNNGRIKQLRSESIGALQ--IEQSEESDQGKYECVATNSAGTR 193

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 10/58 (17%), Positives = 15/58 (25%)

Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           T    P     P   T          C+      P + W K+   V      V+  + 
Sbjct: 2   TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD 59

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE-GSSTVN 87
           +     +  S+            +     L I+  ++SD G+Y+ +A N  G   S+  N
Sbjct: 143 FKDFLPVDTSNNNGRIKQLRSESIG---ALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199

Query: 88  L 88
           L
Sbjct: 200 L 200

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  140 bits (353), Expect = 2e-37
 Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 44/322 (13%)

Query: 110 KPTIHQDGDLLVMECVL-------EASPMPDIIWYQGTKVIE----DTGRIKMSKKSIGK 158
           K     +G+ + + C           SP  ++ W++          +  R+     +   
Sbjct: 26  KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA--- 82

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
                 L +    ++D G Y C   N+      +I L     EN   F P       +  
Sbjct: 83  ------LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF--ENTDAFLPFISYPQILTL 134

Query: 219 NESGTLI--QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
           + SG L+   +      K   +++W+K   L+ + ++  + V     T  ++  + D   
Sbjct: 135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV---RGTTHLL--VHDVAL 189

Query: 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
            D+G YRC +       + N   ++ +  + + E   P  I   K  S   G  + + CK
Sbjct: 190 EDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCK 249

Query: 335 VKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDK---------YHIRLEVKDPRKED 382
           V      P+  ++W+       ++      VT    +           + L      +ED
Sbjct: 250 VFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRED 309

Query: 383 TGL-YKCNIKNFHGELNANLTL 403
             + +KC + N         T+
Sbjct: 310 LHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  124 bits (312), Expect = 9e-32
 Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 37/290 (12%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +   S   +     + +            L +    + DSG Y    +N +     ++ L
Sbjct: 60  HKNDSARTVPGEEETRMWAQDG------ALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLV----MECVLEASPMPDIIWYQGTKVIE 144
              E            P       +      ++    +           I WY+ + +++
Sbjct: 114 RVFEN------TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD 167

Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ--GGEN 202
                 +S +          L +++   +D G YRC    +      NI  + +    + 
Sbjct: 168 KDNEKFLSVRGTTH------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKESSKIKIIVN 259
                P  I   + I    G+ + + CK    +  P   + W+ A+    ES+     V 
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281

Query: 260 E---------QDDTYEIICEITDPIGPDSGT-YRCNVKNEFGESNANLNL 299
           E          ++  E+          D    ++C V N          +
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  122 bits (308), Expect = 3e-31
 Identities = 54/322 (16%), Positives = 94/322 (29%), Gaps = 60/322 (18%)

Query: 207 APSFIEKPR---IIPNESGTL----IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
                   +    +  E   L    +      S  PR  + W K D       + +  + 
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
            QD        +   +  DSGTY C  +N       ++ L +      +   P       
Sbjct: 78  AQDGA----LWLLPALQEDSGTYVCTTRNASYCDKMSIELRV--FENTDAFLPFISYPQI 131

Query: 320 IRSEQGGKLV--VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
           +     G LV   +    + K   +I W+ +   L + +    +V          L V D
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-----HLLVHD 186

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDF 437
              ED G Y+C +   H     N+T +IE+      R++  K                  
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIEL------RIKKKKE----------------- 223

Query: 438 SVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY---EPSVTWMKEKNT 494
                           +PVI    K ++ S    + I CKV         ++ W    +T
Sbjct: 224 --------------ETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269

Query: 495 VKEDNKHVVHIEQVKDVSMNFE 516
             E       + +      +  
Sbjct: 270 HIESAYPGGRVTEGPRQEYSEN 291

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.5 bits (159), Expect = 9e-12
 Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 60/222 (27%)

Query: 297 LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-------VKAKPMPEIVWFHEG 349
             L   A               K      G+ V + C            P   + W    
Sbjct: 4   FTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND 63

Query: 350 KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
                       +  +       L +    +ED+G Y C  +N       ++ L +    
Sbjct: 64  SARTVPGEEETRMWAQDGA----LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF--- 116

Query: 410 FIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK 469
                                         N                +  +     ++  
Sbjct: 117 -----------------------------ENTDA------------FLPFISYPQILTLS 135

Query: 470 KTVVIECKVMSMY-----EPSVTWMKEKNTVKEDNKHVVHIE 506
            + V+ C  +S +     +  + W K+   + +DN+  + + 
Sbjct: 136 TSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR 177

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  134 bits (340), Expect = 7e-37
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 225 IQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
           IQ+    +      +V W      ++ S ++K  V    +   +   I +P   D G Y 
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--GEQIWLQ--INEPTPNDKGKYV 75

Query: 284 CNVKNEFGESNANLNLNIEAEAEPEGD--------------PPTFIEKPKIRSEQGGKLV 329
             + +        ++L+ +A  E   +                     P + + Q GK +
Sbjct: 76  MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135

Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
            + C V   P PE+ W    K L QTD  +  +  +  +      +      D+G Y   
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCN--LKFEAGRTA-YFTINGVSTADSGKYGLV 192

Query: 390 IKNFHGELNANLTLNIE 406
           +KN +G   ++ T+++ 
Sbjct: 193 VKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  126 bits (317), Expect = 1e-33
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
           G           I    + + +   +        + W      I  + R+K      G  
Sbjct: 1   GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVT 55

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAG-------------- 205
              + L+IN PT +D G Y     +        + L+ Q  +                  
Sbjct: 56  GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN 115

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
            A      P ++  + G  + + C     P PEV W K +K + ++    +        Y
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
             I  ++     DSG Y   VKN++G   ++  +++     PE
Sbjct: 176 FTINGVST---ADSGKYGLVVKNKYGSETSDFTVSVF---IPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  112 bits (282), Expect = 1e-28
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 22/180 (12%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
            H GS ++ SDR+ + +  +Q  L       I     +D G+Y +   +       TV+L
Sbjct: 38  SHNGSAIRYSDRVKTGVTGEQIWL------QINEPTPNDKGKYVMELFDGKTGHQKTVDL 91

Query: 89  N----------FSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIW 136
           +          F            +A      P +   Q+G  L + C +   P P++ W
Sbjct: 92  SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151

Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
            +  K +  T    +  ++           IN  +  D G Y     N  G   ++  ++
Sbjct: 152 LKNEKALAQTDHCNLKFEAGRTAY----FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 90.3 bits (224), Expect = 7e-21
 Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 30/201 (14%)

Query: 315 IEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
           +    ++ +   + + +   V       ++ W H G  ++ +DR+     + G++    L
Sbjct: 6   LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK--TGVTGEQI--WL 61

Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY 433
           ++ +P   D G Y   + +        + L+ +                         +Y
Sbjct: 62  QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ-------------------------AY 96

Query: 434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN 493
              ++   + K+ ++   +   V+  +P VVTI + K + + C V     P V+W+K + 
Sbjct: 97  DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 156

Query: 494 TVKEDNKHVVHIEQVKDVSMN 514
            + + +   +  E  +     
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFT 177

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  136 bits (345), Expect = 2e-36
 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 7/202 (3%)

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
              AP F E+ R +     +   + CK +  P+P VKW++  K +        I   +  
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
            +++I  I      D+  Y+    N+ G  +   +L +E     +   P  +E       
Sbjct: 61  YHQLI--IASVTDDDATVYQVRATNQGGSVSGTASLEVEVP--AKIHLPKTLEGMGAVHA 116

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
             G++V ++     KP P I W      +           +    +   +      ++D 
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQ---VIVTRSFTSLVFPNGVERKDA 173

Query: 384 GLYKCNIKNFHGELNANLTLNI 405
           G Y    KN  G     + L++
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  126 bits (317), Expect = 1e-32
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 101 GGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVI-EDTGRIKMSKKSIG 157
           G  AP F ++             + C +   P P + WY+  K I  D  + ++ +   G
Sbjct: 1   GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
                  L I + T DD   Y+  A N  G  +   +L  +         P  +E    +
Sbjct: 61  YHQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA--KIHLPKTLEGMGAV 114

Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
               G ++ +K   S KP P + W K   L+  +   ++IV     +      +      
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER---K 171

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
           D+G Y    KN FG     + L++    +P    
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV 205

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--Q 115
           L I +V   D+  Y+V A N+ G  S T +L                P+  +        
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV------PAKIHLPKTLEGMGAVHAL 117

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
            G+++ ++      P P I W +G  +I++ G  ++    I   ++   +  N   + D 
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDA 173

Query: 176 GNYRCNACNSIGESNANIALNFQG 199
           G Y   A N  G     + L+   
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 92.9 bits (231), Expect = 4e-21
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 43/197 (21%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P F E+ +  + +      + CKV   P P + W+ +GKE+            KG  + 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
            +L +     +D  +Y+    N  G ++   +L +E                        
Sbjct: 63  -QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE------------------------ 97

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
                            V     +P   E    V   + + V I+       +P +TW K
Sbjct: 98  -----------------VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK 140

Query: 491 EKNTVKEDNKHVVHIEQ 507
            ++ +  +  + V + +
Sbjct: 141 GQDLIDNNGHYQVIVTR 157

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 13/81 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                L+  +      + +  + L     +    V++ D+G Y V AKN+ G    TV L
Sbjct: 139 QKGQDLIDNNGHYQVIVTRSFTSL-----VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193

Query: 89  NFSEEDGKLKVPGGKAPRFPK 109
           + ++      VP    PR  K
Sbjct: 194 DVAD------VPD--PPRGVK 206

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  131 bits (330), Expect = 3e-35
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 16/224 (7%)

Query: 193 IALNFQGGENGAGFAPSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLV 248
           +A +F    +    AP +    ++        +   ++ +C     P P ++W K  K  
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60

Query: 249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
           K+  +I            I+  +      D G Y C V+NE+G  N   +L++   +   
Sbjct: 61  KQEHRIGGYKVRNQHWSLIMESVVPS---DKGNYTCVVENEYGSINHTYHLDVVERSRHR 117

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
             P      P   S   G  V   CKV +   P I W    ++            LK  K
Sbjct: 118 --PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175

Query: 369 YHIR-------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +          L + +  + D G Y C + N+ G+ N +  L +
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  115 bits (290), Expect = 1e-29
 Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 19/227 (8%)

Query: 98  KVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
                +AP +     +          + +   C    +PMP + W +  K  +   RI  
Sbjct: 9   NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68

Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
            K      +    L + +    D GNY C   N  G  N    L+               
Sbjct: 69  YKVRNQHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR--PILQA 122

Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE- 270
             P       G  ++  CK  +  +P ++W K  +          +   +   +  I   
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182

Query: 271 ------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP 311
                 + +    D+G Y C V N  G++N +  L +  + +  G  
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 97.3 bits (242), Expect = 3e-23
 Identities = 38/196 (19%), Positives = 57/196 (29%), Gaps = 48/196 (24%)

Query: 300 NIEAEAEPEGDPPTFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQT 355
           +  +E       P +    K+            V   C     PMP + W   GKE +Q 
Sbjct: 4   DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63

Query: 356 DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRV 415
            RI              L ++     D G Y C ++N +G +N    L+           
Sbjct: 64  HRIGGYKVRNQHW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD----------- 109

Query: 416 RSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE 475
                       V  RS HR                    +   +P   +      V   
Sbjct: 110 ------------VVERSRHR------------------PILQAGLPANASTVVGGDVEFV 139

Query: 476 CKVMSMYEPSVTWMKE 491
           CKV S  +P + W+K 
Sbjct: 140 CKVYSDAQPHIQWIKH 155

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 95.7 bits (238), Expect = 1e-22
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G   K   R+    V++Q        L +++V  SD G Y  + +N+ G  + T +L
Sbjct: 54  LKNGKEFKQEHRIGGYKVRNQH-----WSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--- 143
           +  E          +       P       G  +   C + +   P I W +  +     
Sbjct: 109 DVVE------RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSK 162

Query: 144 ---EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              +    +K+ K S    +    L + N T+ D G Y C   N IG++N +  L 
Sbjct: 163 YGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  130 bits (327), Expect = 4e-35
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 208 PSFIEKPR-IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
             F +    +   E G +             +V +   +K + E  K K+ ++      E
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE------------GDPPTF 314
           +   +      D GTY   +++    +++ + L  +   + +               P F
Sbjct: 63  MF--MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120

Query: 315 IEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
           +E            V+++CKV   K    IVW+ + +E+   ++               L
Sbjct: 121 VEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKH------DFKDGICTL 173

Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            + +  K+D G+Y+  +K+  G+  + L L  E
Sbjct: 174 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  119 bits (300), Expect = 3e-31
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 26/215 (12%)

Query: 105 PRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             F K      I + G +       + S    + +    K I +  + KM    I ++T 
Sbjct: 3   DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTG 59

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALN------------FQGGENGAGFAPS 209
           ++ + +     +D G Y     +    +++ + L             FQ  E      P 
Sbjct: 60  IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119

Query: 210 FIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII 268
           F+E            + +KCK +  K    + W+K ++ +    K       +D    + 
Sbjct: 120 FVEYLSWEVTGECN-VLLKCKVANIKKETHIVWYKDEREISVDEKHDF----KDGICTL- 173

Query: 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
             IT+    D+G Y   +K++ G+  + L L  EA
Sbjct: 174 -LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                 +    +    + ++   +     + ++ +Q  D G Y    ++      STV L
Sbjct: 38  IFNEKEIFEGPKYKMHIDRNTGIIE----MFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 93

Query: 89  NFSEEDGKLK--------VPGGKAPRFPKKPTIH-QDGDLLVMEC-VLEASPMPDIIWYQ 138
                    K            + P F +  +        ++++C V        I+WY+
Sbjct: 94  VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK 153

Query: 139 GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
             + I    +             +  L I   +K D G Y     +  G+  + + L  +
Sbjct: 154 DEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

Query: 199 G 199
            
Sbjct: 207 A 207

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  130 bits (329), Expect = 3e-34
 Identities = 53/319 (16%), Positives = 92/319 (28%), Gaps = 36/319 (11%)

Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMP-DIIWY-QGTKV---IEDTGRIKMSKKSIGKD 159
            R  K   +    ++ V  C L  +     I WY   +K     E   RI   K+     
Sbjct: 8   EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK---- 63

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
                L       +D G+Y C   NS       I+  F   E    +    I K ++   
Sbjct: 64  -----LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118

Query: 220 ESGTL---IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
             G L        K      P+++W+K  K +   +     V        I+  + +   
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK----DRLIVMNVAE--- 171

Query: 277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMEC 333
              G Y C+    +   +      +      E +   P  +    +      G  + + C
Sbjct: 172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC 231

Query: 334 KVKAKPMPEIVWFHEGKELQQTDR--------ISWNVTLKGDKYHIRLEVKDPRKED-TG 384
            V  +      W   G  + + D         +      +       L + +        
Sbjct: 232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKH 291

Query: 385 LYKCNIKNFHGELNANLTL 403
            + C  KN HG   A + L
Sbjct: 292 PFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  121 bits (305), Expect = 5e-31
 Identities = 52/286 (18%), Positives = 94/286 (32%), Gaps = 31/286 (10%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y   S   +S   +S + Q +        L     +  DSG Y  + +N +      ++ 
Sbjct: 41  YKDDSKTPVSTEQASRIHQHKE------KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQDGDL---LVMECVLEASPMPDIIWYQGTKVIED 145
            F E +  L         F +K  +  DG L    +     E + +P + WY+  K +  
Sbjct: 95  KFVENEPNLCYN--AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA--LNFQGGENG 203
                   K         RL + N  +   GNY C+A  +       I   + F   E  
Sbjct: 153 DNIHFSGVKD--------RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204

Query: 204 AGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES--------SKI 254
               P  +      +  + G+ IQ+ C  + +      W     ++ E           +
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV 264

Query: 255 KIIVNEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGESNANLNL 299
           +   N++  T   +  I++         + C  KN  G   A + L
Sbjct: 265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  110 bits (276), Expect = 4e-27
 Identities = 45/303 (14%), Positives = 91/303 (30%), Gaps = 55/303 (18%)

Query: 207 APSFIEK--PRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDD 263
           A    E+    I+ + +  +    C  +    +  + W+K D     S++    +++  +
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
                     P    DSG Y C V+N        ++                I K K+  
Sbjct: 63  KLWF-----VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117

Query: 323 EQGGKLV---VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
              G LV   +   K +   +P++ W+ + K L   +     V         RL V +  
Sbjct: 118 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD-------RLIVMNVA 170

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
           ++  G Y C+    +      +T  IE +                   ++     R   V
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFI------------------TLEENKPTRPVIV 212

Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
           +P                    + + +     + + C V         W    + + ED+
Sbjct: 213 SPA------------------NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254

Query: 500 KHV 502
             +
Sbjct: 255 PVL 257

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 65.9 bits (160), Expect = 6e-12
 Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 53/204 (25%)

Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKG 366
           E D     E+  I      ++ V  C +        I W+ +  +   +   +  +    
Sbjct: 2   EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
           +    +L     + ED+G Y C ++N    L   ++                        
Sbjct: 62  E----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF--------------------- 96

Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--- 483
                                V     +    +      +       + C  M  ++   
Sbjct: 97  ---------------------VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135

Query: 484 ---PSVTWMKEKNTVKEDNKHVVH 504
              P + W K+   +  DN H   
Sbjct: 136 NELPKLQWYKDCKPLLLDNIHFSG 159

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  127 bits (320), Expect = 9e-34
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 17/218 (7%)

Query: 207 APSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           AP +    R+        +   ++ +C  +  P P + W K  +  +   +I  I     
Sbjct: 11  APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
               ++  +      D G Y C V+N+FG       L++   +     P      P  ++
Sbjct: 71  QWSLVMESVVPS---DRGNYTCVVENKFGSIRQTYTLDVLERSPHR--PILQAGLPANQT 125

Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR--------LE 374
              G  V   CKV +   P I W    +             +   K  I         L 
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185

Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
           + +  + D G Y C   NF G       L++   R  +
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  114 bits (286), Expect = 5e-29
 Identities = 42/249 (16%), Positives = 80/249 (32%), Gaps = 29/249 (11%)

Query: 94  DGKLKVPGGKAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG 147
           D    V  G AP + +   +          + +   C    +P P I W +  +      
Sbjct: 2   DPDTGVDTG-APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
           RI   K    + +    L + +    D GNY C   N  G       L+    E      
Sbjct: 61  RIGGIKLRHQQWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL--ERSPHRP 114

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL----VKESSKIKIIVNEQDD 263
                 P       G+ ++  CK  +  +P ++W K  ++    V       + V +   
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 264 TYEIICE----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
           +  +  +    + +    D G Y C   N  G +     L++          P   E+  
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH--------GPRAAEEEL 226

Query: 320 IRSEQGGKL 328
           + +++ G +
Sbjct: 227 VEADEAGSV 235

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 98.5 bits (245), Expect = 2e-23
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 28/205 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G   +   R+    ++ Q        L +++V  SD G Y  + +NK G    T  L
Sbjct: 50  LKNGREFRGEHRIGGIKLRHQQ-----WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 104

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-----QGTK 141
           +  E          +       P       G  +   C + +   P I W       G+K
Sbjct: 105 DVLE------RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 158

Query: 142 VIEDTGRIKMSKKSIGKDTYL--LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
           V  D        KS   ++    +RL + N ++ DGG Y C A N IG +     L+  G
Sbjct: 159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218

Query: 200 GENGAGFAPSFIEKPRIIPNESGTL 224
                   P   E+  +  +E+G++
Sbjct: 219 --------PRAAEEELVEADEAGSV 235

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 91.9 bits (228), Expect = 3e-21
 Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 48/196 (24%)

Query: 302 EAEAEPEGDPPTFIEKPKIRSEQ----GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR 357
           + +   +   P +    ++  +         V   C     P P I W   G+E +   R
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

Query: 358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRS 417
           I              L ++     D G Y C ++N  G +    TL+             
Sbjct: 62  IGGIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD------------- 105

Query: 418 NKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECK 477
                     V  RS HR                    +   +P   T      V   CK
Sbjct: 106 ----------VLERSPHR------------------PILQAGLPANQTAVLGSDVEFHCK 137

Query: 478 VMSMYEPSVTWMKEKN 493
           V S  +P + W+K   
Sbjct: 138 VYSDAQPHIQWLKHVE 153

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  133 bits (334), Expect = 2e-33
 Identities = 55/381 (14%), Positives = 112/381 (29%), Gaps = 40/381 (10%)

Query: 38  SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN-FSEEDGK 96
           + R+   +      L+ +    I  ++ SD+G+Y   A + +       +L     E   
Sbjct: 170 TGRIRLDIQGTGQLLFSV---VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226

Query: 97  LKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKS 155
           +      +  F          ++    C   +    D++    G +     GRI ++   
Sbjct: 227 VYEDLRGSVTFHCALGPEV-ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP-- 283

Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
                    + I    K+D G Y C A +       +    +Q   N     P      +
Sbjct: 284 -QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342

Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWF---------------KADKLVKESSKIKIIVNE 260
            +   S  +    C  + K    +K++                ++  VK   + ++ + E
Sbjct: 343 GVAGSSVAV---LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399

Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
           +         +      D+G Y C    +              E +     P       +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV-------EIKIIEGEPNLKVPGNV 452

Query: 321 RSEQGGKLVV---MECKVKAKPMPEIVWFHEGKELQQTDRISWN---VTLKGDKYHIRLE 374
            +  G  L V     CK  +       W + G +   +     +   V    +   + L 
Sbjct: 453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT 512

Query: 375 VKDPRKEDTGLYKCNIKNFHG 395
           +    + D G Y C +K  H 
Sbjct: 513 LNLVTRADEGWYWCGVKQGHF 533

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  122 bits (305), Expect = 1e-29
 Identities = 48/405 (11%), Positives = 106/405 (26%), Gaps = 87/405 (21%)

Query: 117 GDLLVMECVLE---ASPMPDIIWYQG------TKVIEDTGRIKMSKK-----SIGKDTYL 162
           G+ + + C       +      W +         +I   G +          +   +   
Sbjct: 15  GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESG 222
             + I   ++DD G Y+C    +    + +++L            P  +   ++   + G
Sbjct: 75  FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-------QGPGLLNDTKVYTVDLG 127

Query: 223 TLIQMKCKCSAKPRPEVKWF------------KADKLVKESSKIKI-IVNEQDDTYEIIC 269
             + + C    +   + K               +   V  +   +I +  +         
Sbjct: 128 RTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 187

Query: 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNI-----EAEAEPEGDPPTFIEKPKIRSEQ 324
            I      D+G Y C   ++   +  N +L +     E   E      TF         +
Sbjct: 188 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL---GPE 244

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDT 383
              +    C+  +    ++V    GK       RI   +  +       + +   RKED 
Sbjct: 245 VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL--LNPQDKDGSFSVVITGLRKEDA 302

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           G Y C   +       +     ++    +  +  +                         
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS------------------------- 337

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
                            P VV      +V + C        S+ +
Sbjct: 338 -----------------PTVVKGVAGSSVAVLCPYNRKESKSIKY 365

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score =  116 bits (291), Expect = 7e-28
 Identities = 63/388 (16%), Positives = 116/388 (29%), Gaps = 48/388 (12%)

Query: 38  SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL 97
           + R + T   +        V+ I  + + DSG YK      +   S  V+L  S+  G L
Sbjct: 61  AGRANLTNFPENGTF----VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL 116

Query: 98  KVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQGT-----KVIEDTGRIKM 151
                      +  TI+         C  +          Y+        VI+ +G +  
Sbjct: 117 NDTKVYTVDLGRTVTIN---------CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP 167

Query: 152 SKKS------IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENG 203
           +          G    L  + IN     D G Y C A +       NA++ +     E  
Sbjct: 168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV 227

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQD 262
                  +     +  E   + +  C+ S+    +V       +      +I +   ++D
Sbjct: 228 YEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKD 287

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
            ++ ++  IT     D+G Y C   ++      +     +     E   P      K  +
Sbjct: 288 GSFSVV--ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345

Query: 323 EQGGKLVVMECKVKAKPMPEIVW--FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-- 378
              G  V + C    K    I +    EG +  +   +  +      +Y  RL + +   
Sbjct: 346 ---GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402

Query: 379 -----------RKEDTGLYKCNIKNFHG 395
                         D G Y C       
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTL 430

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 88.5 bits (218), Expect = 1e-18
 Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 47/338 (13%)

Query: 30  HKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
                     R+                + I  ++K D+G Y   A +       +    
Sbjct: 268 LGKRAPAFEGRILLNPQDKDGSF----SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323

Query: 90  FSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ---------GT 140
           +              PR P        G  + + C         I ++            
Sbjct: 324 W----QLFVNEESTIPRSPTVVKGVA-GSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCP 378

Query: 141 KVIEDTGRIKMSKK---SI--GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
            +++  G +K   +   S+          + +N  T  D G Y C               
Sbjct: 379 LLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIK 438

Query: 196 NFQGGENGAGFAPSFIEKPRIIPNESGTL---IQMKCKCSAKPRPEVKWFKADKLVKESS 252
             +G        P+      +      TL       CK S+  +   KW         S 
Sbjct: 439 IIEG-------EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491

Query: 253 KIK-----IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAE 306
                   +  +E      +   +      D G Y C VK   F    A + + +E   E
Sbjct: 492 DEGPSKAFVNCDENSRLVSL--TLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE---E 546

Query: 307 PEGDPPTFIEKPKIRSEQGGKLV---VMECKVKAKPMP 341
            +      +   K  +    K++     E + KA   P
Sbjct: 547 RKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 66.9 bits (162), Expect = 6e-12
 Identities = 28/235 (11%), Positives = 62/235 (26%), Gaps = 35/235 (14%)

Query: 209 SFIEKPRIIPNESGTLIQMKCKCSAK---PRPEVKWFK------------ADKLVKESSK 253
           S I  P  + +  G  + + C              W +            ++  V     
Sbjct: 2   SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61

Query: 254 IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
            +  +    +    +  I      DSG Y+C +       + +++             P 
Sbjct: 62  GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS-------LEVSQGPG 114

Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYH 370
            +   K+ +   G+ V + C  K +   +    ++   L     I  +  +      +  
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174

Query: 371 IR----------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRV 415
           +           + +   R  D G Y C   +       N  L +          
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  125 bits (315), Expect = 2e-33
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 9/195 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  I KP+      G +    C     P P + W K  K V  +   +  V EQ     
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGIS 64

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
           I+       G D   Y C  +N  G++ +A+  L I    +     P   + P  R  + 
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  V+M CK    P P I W     ++  ++      +LK       L++++ R+ED G 
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR---YSLKDGF----LQIENSREEDQGK 177

Query: 386 YKCNIKNFHGELNAN 400
           Y+C  +N  G  ++ 
Sbjct: 178 YECVAENSMGTEHSK 192

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  116 bits (293), Expect = 3e-30
 Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 26/226 (11%)

Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIG 157
           G   P   +KP     + G +    C     P P I+W + G KV     R  +    + 
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV----LE 58

Query: 158 KDTYLLRLEINNPTK-DDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPR 215
           +   +  L I       D   Y C A N +G++ +A+  L    G+      P   + P 
Sbjct: 59  QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPG 118

Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
               E G  + M CK    P P + W K    V  S+    +   +D   +I     +  
Sbjct: 119 TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---KDGFLQI-----ENS 170

Query: 276 GP-DSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPK 319
              D G Y C  +N  G  ++   NL ++             +   
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKV-------RRVGTKHHH 209

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 93.3 bits (232), Expect = 5e-22
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 41/194 (21%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP  I KP+ +  + G +    C  +  P P IVW   GK++  T    + V  +     
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGIS 64

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
           I          D   Y+C  +N  G+ ++A+ TL I                        
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGD-------------------- 104

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                               T +  PVI + P    I    TV++ CK +    P++ W+
Sbjct: 105 -------------------KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145

Query: 490 KEKNTVKEDNKHVV 503
           K +  V   N    
Sbjct: 146 KNQTKVDMSNPRYS 159

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 89.5 bits (222), Expect = 1e-20
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 20/170 (11%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGE-GSSTV 86
              G  +  +    + L Q       +++L I+ V+   D   Y+ +A+N  G+  S+  
Sbjct: 41  RKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECVAENGVGDAVSADA 96

Query: 87  NLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE 144
            L   E D          P   + P   + + G  ++M C    +P P+I W +    ++
Sbjct: 97  TLTIYEGD----KTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 152

Query: 145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
            +      K           L+I N  ++D G Y C A NS+G  ++   
Sbjct: 153 MSNPRYSLKDG--------FLQIENSREEDQGKYECVAENSMGTEHSKAT 194

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
            L I+N ++ D G+Y+ +A+N  G   S            L V   K  R   K   H 
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKA--------TNLYV---KVRRVGTKHHHHH 211

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 15/53 (28%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           P I   P+   +         C       PS+ W K    V         +EQ
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ 59

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  121 bits (304), Expect = 4e-32
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
             +F E       + G   ++ C+ S+ P P V W   ++ V   S  +  +   ++   
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ- 60

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
               I +    D G YRC  + E        ++ +     P     +  +K    + + G
Sbjct: 61  ----ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA---ISMPQKSFNATAERG 113

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
           + +   C+    P P I WF  GK +++ ++      LKG      L V++    D G Y
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKY----ILKGSNT--ELTVRNIINSDGGPY 167

Query: 387 KCNIKNFHGELNANLTLNI 405
            C   N  GE      L +
Sbjct: 168 VCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  106 bits (265), Expect = 1e-26
 Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 23/206 (11%)

Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
              F +  +    + G+   + C + +SP P + W    + +      + +  +      
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58

Query: 162 LLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFI--EKPRIIP 218
              L+I N  K D G YRC       GE +    +            P+    +K     
Sbjct: 59  ---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI------VNVPPAISMPQKSFNAT 109

Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD 278
            E G  +   C+ S  P P + WF+  KL++E+ K  +  +  +        + + I  D
Sbjct: 110 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE------LTVRNIINSD 163

Query: 279 SGTYRCNVKNEFGESNANLNLNIEAE 304
            G Y C   N+ GE      L +  +
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVFVQ 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 87.5 bits (217), Expect = 3e-20
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
            L I N+ KSD G Y+   + +        ++        + V    A   P+K      
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDI-------IVIVNVPPAISMPQKSFNATA 110

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
           + G+ +   C    SP P I W++  K+IE+  +       +      L   + N    D
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-----ILKGSNTELT--VRNIINSD 163

Query: 175 GGNYRCNACNSIGESNANIALN 196
           GG Y C A N  GE      L 
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 84.8 bits (210), Expect = 3e-19
 Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 47/193 (24%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
             TF E    +  + G+   + C+V + P P + W +  +E+       + +    +   
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
             L++ +  K D G+Y+C  +                                  G +  
Sbjct: 59  --LQILNINKSDEGIYRCEGRVEAR------------------------------GEIDF 86

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMK 490
           R      +V P               + +     T  + + +   C+     EP+++W +
Sbjct: 87  RDIIVIVNVPPAI------------SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 134

Query: 491 EKNTVKEDNKHVV 503
               ++E+ K+++
Sbjct: 135 NGKLIEENEKYIL 147

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +  G L++ +++    L    + L      T++N+  SD G Y   A NK GE      L
Sbjct: 133 FRNGKLIEENEKY--ILKGSNTEL------TVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

Query: 89  N 89
            
Sbjct: 185 Q 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 454 VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
           +   REV       + +   + C+V S   P+V+W+     V   + +   +
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 53

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  123 bits (309), Expect = 3e-31
 Identities = 46/322 (14%), Positives = 91/322 (28%), Gaps = 32/322 (9%)

Query: 114 HQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS--IGKDTYLLRLEINNPT 171
                 L        S    +IWY   +  +    I        I K+     L      
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFRPTL 87

Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI--QMKC 229
            +D GNY C   N+   S     L     ++              I      +    +  
Sbjct: 88  LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDG 147

Query: 230 KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE 289
              +  +P + W+     ++  + +       +               ++G Y C V   
Sbjct: 148 YFPSSVKPTITWYMGCYKIQNFNNVI-----PEGMNLSFLIALI---SNNGNYTCVVTYP 199

Query: 290 FGESNANL--NLNIEAEAEPEGDPPTFIEKPKIRSE---QGGKLVVMECKV----KAKPM 340
                 +L   L ++    P+   P  I  P        + G+ +++ C V         
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSR 259

Query: 341 PEIVWFHEGKELQQTDR------ISWNVTLKGDKYHIRLEVKDPRKEDTGL-YKCNIKNF 393
            E+ W  +GK+               +   + +     L +K    ED    Y C+ ++ 
Sbjct: 260 NEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSA 319

Query: 394 HGELNANLTLNIEMV--RFIKY 413
            GE+     +  ++   R+   
Sbjct: 320 KGEVAKAAKVKQKVPAPRYTVE 341

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  110 bits (276), Expect = 8e-27
 Identities = 44/269 (16%), Positives = 79/269 (29%), Gaps = 33/269 (12%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
           VL  +    +D+G Y  + +N          L   ++D           + P      + 
Sbjct: 80  VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD----SCFNSPMKLPVHKLYIEY 135

Query: 117 GDLLV----MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
           G   +    ++    +S  P I WY G   I++   +               L       
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM---------NLSFLIALI 186

Query: 173 DDGGNYRCNACNSIGESNANIA--LNFQGGENGAGFAPSFIEKPR---IIPNESGTLIQM 227
            + GNY C           ++   L  +   +     P  I  P    +   E G  + +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246

Query: 228 KCK----CSAKPRPEVKWFKADKLVKES------SKIKIIVNEQDDTYEIICEITDPIGP 277
            C          R EV W    K   +       ++       +D+T   I  I      
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306

Query: 278 D-SGTYRCNVKNEFGESNANLNLNIEAEA 305
           D   +Y C+ ++  GE      +  +  A
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPA 335

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 98.8 bits (245), Expect = 8e-23
 Identities = 33/301 (10%), Positives = 73/301 (24%), Gaps = 61/301 (20%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE----QDDTYEIICEITDPIGP 277
              ++     +      + W+   +       I   + E    ++     +      +  
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD---VLWFRPTLLN 89

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV--VMECKV 335
           D+G Y C ++N    S     L +  +      P               ++    ++   
Sbjct: 90  DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF 149

Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
            +   P I W+    ++Q  + +              L        + G Y C +     
Sbjct: 150 PSSVKPTITWYMGCYKIQNFNNVIPEGM--------NLSFLIALISNNGNYTCVVTYPEN 201

Query: 396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVP 455
               +LT  + +                    V     +                   VP
Sbjct: 202 GRTFHLTRTLTVK-------------------VVGSPKNA------------------VP 224

Query: 456 VIREVPK---VVTISKKKTVVIECKVMSMYE----PSVTWMKEKNTVKEDNKHVVHIEQV 508
            +   P    V      + ++I C V   +       V W  +     +    V   E +
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284

Query: 509 K 509
            
Sbjct: 285 S 285

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 21/204 (10%), Positives = 54/204 (26%), Gaps = 57/204 (27%)

Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN-----VTLKGDKYHIRL 373
           +I+       +             ++W+   ++    + I++      ++ + D     L
Sbjct: 26  RIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD----VL 81

Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSY 433
             +     DTG Y C ++N          L +                     + K   +
Sbjct: 82  WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEV---------------------VQKDSCF 120

Query: 434 HRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVV---IECKVMSMYEPSVTWMK 490
           +                    P+   V K+      + +    ++    S  +P++TW  
Sbjct: 121 NS-------------------PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161

Query: 491 EKNTVKEDNKHVV-----HIEQVK 509
               ++  N  +            
Sbjct: 162 GCYKIQNFNNVIPEGMNLSFLIAL 185

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 53  YYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
               +L+IK V   D    Y   A++  GE +    +       K KVP   APR+
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV-------KQKVP---APRY 338

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  121 bits (304), Expect = 5e-31
 Identities = 47/306 (15%), Positives = 82/306 (26%), Gaps = 40/306 (13%)

Query: 110 KPTIH--------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            P I         + G+ + + CV   S    + W                  ++  ++ 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYW----------TLDPESP 49

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
              L   N T  + G YRC         +  I L  +        A S+    + +    
Sbjct: 50  GSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD------PAHSWNLLAQEVTVVE 103

Query: 222 GTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
           G    + C  +    +  V   +          +      +         I      DS 
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFI------IRKAKVLDSN 157

Query: 281 TYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
           TY C       ES +  + L +        +PP    +P       G+   + C      
Sbjct: 158 TYVCKTMVNGRESTSTGIWLKVNRV---HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE 214

Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
           +   V    G    +    S        K    L +     +D G+Y C   N  G   A
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA-LSLNAVDFQDAGIYSCVASNDVGTRTA 273

Query: 400 NLTLNI 405
            +   +
Sbjct: 274 TMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  113 bits (283), Expect = 4e-28
 Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 31/252 (12%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
            LT +N    ++G Y+         GS+T++L         K P        ++ T+ + 
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV-------KDPAHSWNLLAQEVTVVEG 104

Query: 117 GDLLVMECVLEASPM-PDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
            +  V+ C++    +   +    +G + +        S              I      D
Sbjct: 105 QE-AVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------GFIIRKAKVLD 155

Query: 175 GGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
              Y C    +  ES +  I L            P    +P  +    G   Q+ C  + 
Sbjct: 156 SNTYVCKTMVNGRESTSTGIWLKVNRVHPE---PPQIKLEPSKLVRIRGEAAQIVCSATN 212

Query: 234 KPRPEVKWFKADKL---VKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNE 289
                    K       +  +S  +    ++     +     + +   D+G Y C   N+
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL-----NAVDFQDAGIYSCVASND 267

Query: 290 FGESNANLNLNI 301
            G   A +N  +
Sbjct: 268 VGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 40  RLSSTLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKL 97
           R     V  ++  ++       I+  +  DS  Y       NG  S++  +       K+
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIWL-----KV 179

Query: 98  KVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKK 154
                + P+        +   G+   + C    + +   +  + G   +E          
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239

Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
              K      L +N     D G Y C A N +G   A +  
Sbjct: 240 YYKKVR---ALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 75/308 (24%)

Query: 213 KPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P I P+        G  + ++C  +      V+W            I        ++  
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDG---------PISPYWTLDPESPG 50

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                 +    ++GTYRC    +    +  ++L +    +P     ++    +  +   G
Sbjct: 51  STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV---KDP---AHSWNLLAQEVTVVEG 104

Query: 327 KLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           +  V+ C +    +   +    EG                  +      ++  +  D+  
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKT---VYFFSPWRG---FIIRKAKVLDSNT 158

Query: 386 YKCNIKN-FHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
           Y C          +  + L +  V                                    
Sbjct: 159 YVCKTMVNGRESTSTGIWLKVNRV------------------------------------ 182

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVH 504
                     P I+  P  +   + +   I C   +        +K  +T  E   +   
Sbjct: 183 ------HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236

Query: 505 IEQVKDVS 512
            +      
Sbjct: 237 QDNYYKKV 244

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 24/200 (12%), Positives = 48/200 (24%), Gaps = 62/200 (31%)

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
           A+P    P           + G+ V + C         + W          D  S   TL
Sbjct: 1   ADP---APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTL 53

Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424
                      ++   ++TG Y+C         +  + L ++                  
Sbjct: 54  ---------TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK------------------ 86

Query: 425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YE 483
                                              + + VT+ + +  V+ C +     +
Sbjct: 87  --------------DPAH-------------SWNLLAQEVTVVEGQEAVLPCLITDPALK 119

Query: 484 PSVTWMKEKNTVKEDNKHVV 503
            SV+ M+E            
Sbjct: 120 DSVSLMREGGRQVLRKTVYF 139

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  117 bits (296), Expect = 7e-31
 Identities = 43/201 (21%), Positives = 65/201 (32%), Gaps = 19/201 (9%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP        +      +    C   + P+PE+ W +   L+K     +  + E      
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLT 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
           I          D G Y C   N  G +  +               P     P       G
Sbjct: 66  I----LSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEG 115

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
              V+ C     P P + W      L++  RI+  V   G      L + + +KED G Y
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA--VLESGS-----LRIHNVQKEDAGQY 168

Query: 387 KCNIKNFHGELNANL-TLNIE 406
           +C  KN  G   + L  L +E
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  108 bits (271), Expect = 2e-27
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 30/212 (14%)

Query: 104 APRFPKKPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
           A + PK P I            ++    C +E+ P P+I W +   +I+       ++ S
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD----TRYS 56

Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKP 214
           I ++  LL   I +    D G Y C A N +G +  +   L  +         P     P
Sbjct: 57  IRENGQLLT--ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-------KPKITRPP 107

Query: 215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP 274
             +    G    + C     P+P V W K D  ++E+S+I ++ +           I + 
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-------LRIHNV 160

Query: 275 IGPDSGTYRCNVKNEFGESNANL-NLNIEAEA 305
              D+G YRC  KN  G + + L  L +E  A
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                L+K+ D   S             +LTI +V+ SD G Y   A N  G    +   
Sbjct: 42  TRNKILIKLFDTRYSIRENG-------QLLTILSVEDSDDGIYCCTANNGVGGAVESCGA 94

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT 146
                  ++K+     P+  + P      +G   V+ C    +P P + W +G   + + 
Sbjct: 95  L------QVKMK----PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN 144

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
            RI + +           L I+N  K+D G YRC A NS+G + + + 
Sbjct: 145 SRIAVLESG--------SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 52/201 (25%)

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVT 363
           AE     P      +       ++    C V++ P PEI W      ++  D R S  + 
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS--IR 58

Query: 364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVG 423
             G      L +      D G+Y C   N  G                            
Sbjct: 59  ENGQL----LTILSVEDSDDGIYCCTANNGVGG--------------------------- 87

Query: 424 KMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483
                               +    L + + P I   P  V I +    V+ C  M   +
Sbjct: 88  ------------------AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPK 129

Query: 484 PSVTWMKEKNTVKEDNKHVVH 504
           PSV+W+K  + ++E+++  V 
Sbjct: 130 PSVSWIKGDSALRENSRIAVL 150

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           PVI    + V    ++     C V S  +P ++W + K  +K  +      E
Sbjct: 8   PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  120 bits (301), Expect = 1e-30
 Identities = 41/320 (12%), Positives = 87/320 (27%), Gaps = 38/320 (11%)

Query: 101 GGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
            G  P         + + G  + + CV   S    + W                  ++  
Sbjct: 1   AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWD----------GPPSPHWTLYS 46

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
           D     L  NN T  + G YRC         +A I L  +        A  +    + + 
Sbjct: 47  DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK------DPARPWNVLAQEVV 100

Query: 219 NESGTLIQMKCKCSA-KPRPEVKWFKAD-KLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
                   + C  +       V   +   + +   +            +     I     
Sbjct: 101 VFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF-----SPWHGFT--IHRAKF 153

Query: 277 PDSGTYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335
             S  Y+C+      +    ++ L ++   +    PP     P       G+   + C  
Sbjct: 154 IQSQDYQCSALMGGRKVMSISIRLKVQ---KVIPGPPALTLVPAELVRIRGEAAQIVCSA 210

Query: 336 KAKPMPEIV-WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
            +  +   V   H   +L    +  ++      +  + L +     +  G Y C   N  
Sbjct: 211 SSVDVNFDVFLQHNNTKLAIPQQSDFHNN--RYQKVLTLNLDQVDFQHAGNYSCVASNVQ 268

Query: 395 GELNANLTLNIEMVRFIKYR 414
           G+ + ++   +       + 
Sbjct: 269 GKHSTSMFFRVVESAGNSHH 288

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  111 bits (279), Expect = 1e-27
 Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 38/272 (13%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
           +L+  N    ++G Y+         GS+ ++L         K P        ++  + +D
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV-------KDPARPWNVLAQEVVVFED 104

Query: 117 GDLLVMECVLEA-SPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
            D  ++ C+L        +       + +        S              I+      
Sbjct: 105 QD-ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG--------FTIHRAKFIQ 155

Query: 175 GGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA 233
             +Y+C+A     +  +    L  Q    G    P+    P  +    G   Q+ C  S+
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKVQKVIPG---PPALTLVPAELVRIRGEAAQIVCSASS 212

Query: 234 KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE 292
                +V     +  +    +     N       +   +       +G Y C   N  G+
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN--LDQVDFQHAGNYSCVASNVQGK 270

Query: 293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            + ++   +             +E        
Sbjct: 271 HSTSMFFRV-------------VESAGNSHHH 289

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 80.0 bits (197), Expect = 1e-16
 Identities = 33/309 (10%), Positives = 78/309 (25%), Gaps = 76/309 (24%)

Query: 213 KPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P I P+        G  + ++C  +      V+W                    D +  
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPP--------SPHWTLYSDGSSS 51

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
           I+    +    ++GTYRC    +    +A ++L ++           +    +       
Sbjct: 52  IL-STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD------PARPWNVLAQEVVVFED 104

Query: 327 KLVVMECKVKA-KPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
           +  ++ C +        +      G+ L +    S++             +   +   + 
Sbjct: 105 QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP--WHG-----FTIHRAKFIQSQ 157

Query: 385 LYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK 444
            Y+C+      +                  V S    +                      
Sbjct: 158 DYQCSALMGGRK------------------VMSISIRL---------------------- 177

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKEDNKHVV 503
                 +   P +  VP  +   + +   I C   S+     V        +    +   
Sbjct: 178 -KVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236

Query: 504 HIEQVKDVS 512
           H  + + V 
Sbjct: 237 HNNRYQKVL 245

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 20  IEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN 79
           ++ NF + + H  + L +  +         +R   +  L +  V    +G Y  +A N  
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFH----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQ 268

Query: 80  GEGSSTVNLN 89
           G+ S+++   
Sbjct: 269 GKHSTSMFFR 278

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  121 bits (304), Expect = 3e-30
 Identities = 48/203 (23%), Positives = 71/203 (34%), Gaps = 21/203 (10%)

Query: 213 KPRII--PNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-----IIVNEQD 262
           +P II   NE+      + + C    +P PE+ W +A      +   K     I V  Q 
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
            +  +   I D    DSG Y C   +  G    ++ L+IE         P FI    I  
Sbjct: 61  GSSSLH--IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYY 111

Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
              G  + + C VK+ P   I W  +   L   +    N+        + LE+      D
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT--NLKTYSTGRKMILEIAPTSDND 169

Query: 383 TGLYKCNIKNFHGELNANLTLNI 405
            G Y C   N  G       L +
Sbjct: 170 FGRYNCTATNHIGTRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  112 bits (281), Expect = 4e-27
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 25/220 (11%)

Query: 110 KPTIHQ-------DGDLLVMECVLEASPMPDIIWYQGTK--VIEDTGRIKMSKKSIGKDT 160
           +P I Q       +   + + C  E  P+P+I W +        +  +    +  +    
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
               L I +    D G Y C A + IG    ++ L+ +       +AP FI    I  + 
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-------YAPKFISNQTIYYSW 113

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
            G  I + C   + P   + W +   ++   +   +          +  EI      D G
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL--EIAPTSDNDFG 171

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
            Y C   N  G       L +        D P+     KI
Sbjct: 172 RYNCTATNHIGTRFQEYILALA-------DVPSSPYGVKI 204

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  100 bits (250), Expect = 4e-23
 Identities = 60/328 (18%), Positives = 109/328 (33%), Gaps = 40/328 (12%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--Q 115
           L IK+V+ SDSG Y   A ++ G    ++ L        ++      P+F    TI+   
Sbjct: 65  LHIKDVKLSDSGRYDCEAASRIGGHQKSMYL-------DIEYA----PKFISNQTIYYSW 113

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
           +G+ + + C ++++P   I W +   V+       +   S G+      LEI   + +D 
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI---LEIAPTSDNDF 170

Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGTLIQMKCKCSAK 234
           G Y C A N IG       L            PS     +II  +++   +      S  
Sbjct: 171 GRYNCTATNHIGTRFQEYILALAD-------VPSSPYGVKIIELSQTTAKVSFNKPDSHG 223

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
             P   +    K V       +  +           + +     +   R    N  G+ +
Sbjct: 224 GVPIHHYQVDVKEVASEIWKIVRSHGVQTMV----VLNNLEPNTTYEIRVAAVNGKGQGD 279

Query: 295 ANLNLNIEAEAEPEGDPP----------TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV 344
            +     +     E  PP          +F      + + G    ++E  VK +   +  
Sbjct: 280 YSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAP--ILEYIVKYRSKDKED 337

Query: 345 WFHEGKELQQTDRISWNVTLKGDKYHIR 372
            + E K     D I          Y ++
Sbjct: 338 QWLEKKVQGNKDHIILEHLQWTMGYEVQ 365

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 50/204 (24%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD---RISWNVTLKGDK 368
           P  I+     + + G+ V + C  + +P+PEI W         T+    +   + +KG  
Sbjct: 2   PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
               L +KD +  D+G Y C   +  G    ++ L+IE                      
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE---------------------- 98

Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
                                     P       +    +   + I C V S    S+ W
Sbjct: 99  ------------------------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHW 134

Query: 489 MKEKNTVKEDNKHVVHIEQVKDVS 512
            ++K  +   N   +         
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRKM 158

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 25/173 (14%), Positives = 44/173 (25%), Gaps = 41/173 (23%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                +L   +  +        +     +L I     +D G Y   A N  G       L
Sbjct: 135 RRDKLVLPAKNTTNLKTYSTGRK----MILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIHQ------------DGDLLVMECVLEASPMPDIIW 136
             ++      VP   +P   K   + Q             G + +    ++   +   IW
Sbjct: 191 ALAD------VPS--SPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242

Query: 137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
                    T                  + +NN   +     R  A N  G+ 
Sbjct: 243 KIVRSHGVQT-----------------MVVLNNLEPNTTYEIRVAAVNGKGQG 278

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  119 bits (299), Expect = 3e-29
 Identities = 41/355 (11%), Positives = 88/355 (24%), Gaps = 52/355 (14%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
              T+   +      +    +         +  N S             P     P + +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 116 DGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
                 + C L+   P+ +   +    +     R+  +                    + 
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
                C              +            P+            GT  ++  KC A 
Sbjct: 258 TQRLTCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGT--EVTVKCEAH 308

Query: 235 PRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
           PR +V       + +   +++ +    +D+                 ++ C+   E    
Sbjct: 309 PRAKVTLNGVPAQPLGPRAQLLLKATPEDN---------------GRSFSCSATLEVAGQ 353

Query: 294 NANLNLNIEAEAEPEGDPPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE 351
             + N   E         P   E+  P   +          C+    P+PE+    +G  
Sbjct: 354 LIHKNQTRELRVL---YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 410

Query: 352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                     VT                ++  G Y C  ++  GE+   +T+N+ 
Sbjct: 411 PLPIGESV-TVT----------------RDLEGTYLCRARSTQGEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score =  107 bits (268), Expect = 3e-25
 Identities = 51/485 (10%), Positives = 115/485 (23%), Gaps = 105/485 (21%)

Query: 41  LSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100
           + + L + +  L        +     +  +    +   +G+ ++   L            
Sbjct: 33  IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW-------- 84

Query: 101 GGKAPRFPK---KPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKK 154
               P   +    P+    G  L + C +E         ++  +G K ++         +
Sbjct: 85  ---TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR--------E 133

Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP 214
               +   +   +       G N+ C     +      +  N         F        
Sbjct: 134 PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ 193

Query: 215 RIIPN--ESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
            + P   E  T   + C      P  E +      L     ++   V   +D++      
Sbjct: 194 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKA-S 248

Query: 272 TDPIGPDSGTY--RCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV 329
                 D GT    C V            + I +        P             G  V
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS-------FPAPNVILTKPEVSEGTEV 301

Query: 330 VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN 389
            ++C+   +    +                      G +  + L+     +++   + C+
Sbjct: 302 TVKCEAHPRAKVTLNGVPAQPL--------------GPRAQLLLKAT--PEDNGRSFSCS 345

Query: 390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL 449
                                           V    + K ++        P+       
Sbjct: 346 ATL----------------------------EVAGQLIHKNQTRELRVLYGPRL------ 371

Query: 450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
                   R+ P   T  +       C+      P +  +K       D    + I +  
Sbjct: 372 ------DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------DGTFPLPIGESV 418

Query: 510 DVSMN 514
            V+ +
Sbjct: 419 TVTRD 423

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 96.1 bits (238), Expect = 2e-21
 Identities = 36/253 (14%), Positives = 71/253 (28%), Gaps = 54/253 (21%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
                +V   D G  ++      G  S             + +    AP          +
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQT-------VTIYSFPAPNVILTKPEVSE 297

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G  + ++C  EA P   +                +  + +G      +L +    +D+G 
Sbjct: 298 GTEVTVKC--EAHPRAKVTLN------------GVPAQPLGPRA---QLLLKATPEDNGR 340

Query: 177 NYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEK--PRIIPNESGTLIQMKCK 230
           ++ C+A   +       N    L          + P   E+  P        +     C+
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVL-------YGPRLDERDCPGNWTWPENSQQTPMCQ 393

Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF 290
               P PE+K  K         +   +  +                   GTY C  ++  
Sbjct: 394 AWGNPLPELKCLKDGTFPLPIGESVTVTRD-----------------LEGTYLCRARSTQ 436

Query: 291 GESNANLNLNIEA 303
           GE    + +N+ +
Sbjct: 437 GEVTREVTVNVLS 449

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  116 bits (291), Expect = 5e-29
 Identities = 51/312 (16%), Positives = 93/312 (29%), Gaps = 30/312 (9%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRL 165
                +   G+    +C      +    +     V+  E  G+ +       K+     L
Sbjct: 35  GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG---DL 91

Query: 166 EINNPTK-DDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
            I N T  D    Y C      G+    I  +           PS I +   +       
Sbjct: 92  WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR------KPPSCIPETYELGTHDKYG 145

Query: 225 IQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
           I + C    AK    + W+K ++ +           +          I +P   DSG Y 
Sbjct: 146 IDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ-------NLIIHNPELEDSGRYD 198

Query: 284 CNVKNEFGESNANLNLNIEAE---AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM 340
           C V  +      ++ ++          +      I  PKI    G     + C   +  +
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEP-ANITCTAVSTSL 257

Query: 341 PE----IVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFH 394
                 I W +    +   D  +   +T  G      L  ++  +E  G  Y C   N++
Sbjct: 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYY 317

Query: 395 GELNANLTLNIE 406
            +     T+ +E
Sbjct: 318 FDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 97.6 bits (242), Expect = 1e-22
 Identities = 39/259 (15%), Positives = 67/259 (25%), Gaps = 32/259 (12%)

Query: 57  VLTIKNVQKSDSGE-YKVIAKNKNGE-GSSTVNLNFSEEDGKLKVPGGKAPRF--PKKPT 112
            L I N   +DS   Y      KNG+     V  +  +            P         
Sbjct: 90  DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK-----------PPSCIPETYEL 138

Query: 113 IHQDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT 171
              D   + + C +L A    +I WY+  + +   G                 L I+NP 
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ--------NLIIHNPE 190

Query: 172 KDDGGNYRCNACNSIGESNANIALNFQGGE--NGAGFAPSFIEKPRIIPNESGTLIQMKC 229
            +D G Y C           +I ++         +      +     I    G    + C
Sbjct: 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITC 250

Query: 230 KCSAKPRPE----VKWFKADKLVKESSKIKIIVNEQDDTY-EIICEITDPIGPDSG-TYR 283
              +         + W      +         +        E      +      G TY 
Sbjct: 251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT 310

Query: 284 CNVKNEFGESNANLNLNIE 302
           C   N + +      + +E
Sbjct: 311 CRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 73.3 bits (179), Expect = 2e-14
 Identities = 36/299 (12%), Positives = 77/299 (25%), Gaps = 67/299 (22%)

Query: 234 KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP--DSGTYRCNVKNEFG 291
                V W K  K  +  +        ++    I                Y C V  + G
Sbjct: 65  DKDNVVNWEKIGKTRRPLN-----RRVKNGDLWIA-----NYTSNDSHRRYLCTVTTKNG 114

Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGK 350
           +    +  +   +      PP+ I +           + + C +  AK    I W+   +
Sbjct: 115 DCVQGIVRSHIRK------PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ 168

Query: 351 ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRF 410
           EL          +  G      L + +P  ED+G Y C +      +  ++ ++      
Sbjct: 169 ELIIDGT---KYSQSGQ----NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR----- 216

Query: 411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKK 470
                                   +  +V P                  +   + ++  +
Sbjct: 217 -----------------------CKILTVIPS---------QDHRFKLILDPKINVTIGE 244

Query: 471 TVVIECKV----MSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKR 525
              I C      + + +  + W      +   +  V  I           L+   V + 
Sbjct: 245 PANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE 303

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  112 bits (281), Expect = 6e-29
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 23/204 (11%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDT 264
            P  +    +I  +S   + ++C  ++     +   W K    +  + K           
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-------ASN 55

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            E    I  P   DSG Y C V +      AN  + ++A        P      +  ++ 
Sbjct: 56  MEYR--INKPRAEDSGEYHC-VYHFVSAPKANATIEVKA-------APDITGHKRSENKN 105

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS---WNVTLKGDKYHIRLEVKDPRKE 381
            G+  +M CK    P PE +W  +   + +    S   + +  K +   + + V     E
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI-VNLQITE 164

Query: 382 DTGLYKCNIKNFHGELNANLTLNI 405
           D G Y+CN  N  G  + +  L +
Sbjct: 165 DPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  107 bits (269), Expect = 3e-27
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 28/206 (13%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDTGRIKMSKKSIGKD 159
            PR        I      + ++C L +S    +   W +    +  T +   +       
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM------ 56

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN 219
                  IN P  +D G Y C   + +    AN  +  +        AP      R    
Sbjct: 57  ----EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA-------APDITGHKRSENK 104

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI---KIIVNEQDDTYEIICEITDPIG 276
             G    M CK    P PE  W K +  V E       +  +  +++  E+   I +   
Sbjct: 105 NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN--IVNLQI 162

Query: 277 P-DSGTYRCNVKNEFGESNANLNLNI 301
             D G Y CN  N  G ++ +  L +
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 86.8 bits (215), Expect = 6e-20
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 15/154 (9%)

Query: 46  VQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAP 105
           +    +        I   +  DSGEY  +  +      +   +       ++K      P
Sbjct: 46  LTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATI-------EVKAA----P 93

Query: 106 RFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163
                       +G   +M C     P P+ +W +    + +       +  I       
Sbjct: 94  DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153

Query: 164 RLEINNP-TKDDGGNYRCNACNSIGESNANIALN 196
            L I N    +D G Y CNA NSIG ++ +  L 
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 82.6 bits (204), Expect = 2e-18
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 58/194 (29%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGD 367
           + P  +   ++        V ++C + +     +   W   G EL  T + + N+  +  
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYR-- 59

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
                  +  PR ED+G Y C + +F     AN T+ ++                     
Sbjct: 60  -------INKPRAEDSGEYHC-VYHFVSAPKANATIEVK--------------------- 90

Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVT 487
                                      P I    +    ++ +  ++ CK +    P   
Sbjct: 91  -------------------------AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWM 125

Query: 488 WMKEKNTVKEDNKH 501
           W K++N V E+  +
Sbjct: 126 WRKKENGVFEEISN 139

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 6/63 (9%)

Query: 453 VVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKH----VVHIE 506
             P I    +V+       V ++C + S         W K    +    K+       I 
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRIN 61

Query: 507 QVK 509
           + +
Sbjct: 62  KPR 64

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  115 bits (288), Expect = 8e-29
 Identities = 46/312 (14%), Positives = 88/312 (28%), Gaps = 47/312 (15%)

Query: 117 GDLLVMECVLEASPMPD-----IIWY-------------QGTKVIEDTGRIKMSKKSIGK 158
           GD + + C L+   M       + W                     ++ R++     +G 
Sbjct: 15  GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFIEKPRII 217
           +     L +     +D GNY C       G  + +I L            P    + + +
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL-------AKPQNTAEVQKV 127

Query: 218 PNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
                 +   +C     +P  ++ W      +  +S++   ++       +   +     
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLW-ILVPSSQ 186

Query: 277 PDSGTYRCNVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
            D     C V++E  E      +NL +         P   I         G     + C 
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTVYYP------PEVSISGYDNNWYLGQNEATLTCD 240

Query: 335 VKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF 393
            ++ P P    W      L                    L ++   K       CN+ N 
Sbjct: 241 ARSNPEPTGYNWSTTMGPLPPFAVAQGAQ----------LLIRPVDKPINTTLICNVTNA 290

Query: 394 HGELNANLTLNI 405
            G   A LT+ +
Sbjct: 291 LGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  105 bits (262), Expect = 3e-25
 Identities = 38/252 (15%), Positives = 66/252 (26%), Gaps = 38/252 (15%)

Query: 58  LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ- 115
           L +  ++  D G Y  +      G  S  + L        +       P+   +    Q 
Sbjct: 81  LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR-------VLAK----PQNTAEVQKVQL 129

Query: 116 -DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
               + +  C      P   I W+     + +T ++       G  T      +   ++ 
Sbjct: 130 TGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF--LSGTVTVTSLWILVPSSQV 187

Query: 174 DGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC 231
           DG N  C   +   E      + L               I               + C  
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPP------EVSISGYDNNWYLGQNEATLTCDA 241

Query: 232 SAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNE 289
            + P P    W      +   +        Q     I      P+    + T  CNV N 
Sbjct: 242 RSNPEPTGYNWSTTMGPLPPFAVA------QGAQLLI-----RPVDKPINTTLICNVTNA 290

Query: 290 FGESNANLNLNI 301
            G   A L + +
Sbjct: 291 LGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 22/143 (15%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
           +  +    + D        ++++ E     TVNL        +  P   +          
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-------VYYPPEVSISGYDNNWYL 230

Query: 115 QDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
              +   + C   ++P P    W      +      + +           +L I    K 
Sbjct: 231 G-QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGA-----------QLLIRPVDKP 278

Query: 174 DGGNYRCNACNSIGESNANIALN 196
                 CN  N++G   A + + 
Sbjct: 279 INTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 65/212 (30%)

Query: 326 GKLVVMECKVKAKPMP-----EIVWFHEGK-------------ELQQTDRISWNVTLKGD 367
           G  V + C ++   M      ++ W   G+                ++ R+ +     G 
Sbjct: 15  GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74

Query: 368 KYHI-RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
           +     L +   R ED G Y C    F                                 
Sbjct: 75  ELRNASLRMFGLRVEDEGNYTCLFVTFPQ------------------------------- 103

Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPS 485
                                 L +   P      + V ++ +   +  C          
Sbjct: 104 --------------GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ 149

Query: 486 VTWMKEKNTVKEDNKHVVHIEQVKDVSMNFEL 517
           +TW  +   +   ++    +     V+  + L
Sbjct: 150 ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  111 bits (279), Expect = 2e-28
 Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 22/207 (10%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           +P  IE P  +  +      + CK   KP P ++WFK  + V  + K    V  +D    
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
               +      D G Y C  KN  G++   +A+L + +            F  +PK    
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL--------RDDFRVEPKDTRV 120

Query: 324 QGGKLVVMEC-KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDP 378
             G+  ++EC   K  P P ++W  +G  L     +S        +  I     L + + 
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS---FGASSRVRIVDGGNLLISNV 177

Query: 379 RKEDTGLYKCNIKNFHGELN---ANLT 402
              D G YKC  +N  G      A L 
Sbjct: 178 EPIDEGNYKCIAQNLVGTRESSYAKLI 204

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 99.2 bits (247), Expect = 6e-24
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 28/227 (12%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKD 159
           ++PR  + P   + +  +   + C +E  P P I W++ G  V  +  +    +   G  
Sbjct: 8   QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG-- 65

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIP 218
                  +    + DGG Y C A N +G++   + +L        A     F  +P+   
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI------AVLRDDFRVEPKDTR 119

Query: 219 NESGTLIQMKC-KCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE----ITD 273
              G    ++C      P P + W K    + +   +    + +     I+      I++
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR---VRIVDGGNLLISN 176

Query: 274 PIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPK 319
               D G Y+C  +N  G   ++   L ++                 
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-------KAAAHHHHH 216

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 39/201 (19%), Positives = 72/201 (35%), Gaps = 47/201 (23%)

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362
           A    +   P  IE P     +  +   + CKV+ KP P I WF +G+ +   ++ S  V
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60

Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGI 421
             K         ++  +++D G Y C  KN  G+ ++ + +L I ++R            
Sbjct: 61  QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR------------ 108

Query: 422 VGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSM 481
                                               R  PK   ++K +T ++EC     
Sbjct: 109 ---------------------------------DDFRVEPKDTRVAKGETALLECGPPKG 135

Query: 482 Y-EPSVTWMKEKNTVKEDNKH 501
             EP++ W+K+   + +    
Sbjct: 136 IPEPTLIWIKDGVPLDDLKAM 156

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
           EG+P   IE       +  G  +  +++ S  +      L++    T++  ++ D GEY 
Sbjct: 34  EGKPEPTIE------WFKDGEPVSTNEKKSHRVQFKDGALFFY--RTMQGKKEQDGGEYW 85

Query: 73  VIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVL-EA 128
            +AKN+ G+  S   +L  +               F  +P  T    G+  ++EC   + 
Sbjct: 86  CVAKNRVGQAVSRHASLQIAVL----------RDDFRVEPKDTRVAKGETALLECGPPKG 135

Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
            P P +IW +    ++D   +     S  +      L I+N    D GNY+C A N +G 
Sbjct: 136 IPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195

Query: 189 SNANIA 194
             ++ A
Sbjct: 196 RESSYA 201

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           P I E P  + + K +   + CKV    EP++ W K+   V  + K    ++
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  110 bits (276), Expect = 5e-28
 Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK---IIVNEQD 262
           F P  +E P  +    G    + CK   +P P ++W+K  + V+          ++    
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
             + +         PD G Y C  +N  GE+ ++     +A  E       F + P    
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH-----DASLEVAILRDDFRQNPSDVM 122

Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
              G+  VMEC+  +  P P I W  +G  L   D     +T++G K    L +   RK 
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER---ITIRGGK----LMITYTRKS 175

Query: 382 DTGLYKCNIKNFHGELN---ANLT 402
           D G Y C   N  GE     A LT
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELT 199

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  106 bits (265), Expect = 2e-26
 Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDT 160
            PR  + P   I   G+   + C  E  P P I WY+ G +V  D    +  +  +   +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 161 -YLLRLEINNPTKDDGGNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIP 218
            + LR+     ++ D G Y C A N +GE+   + +L        A     F + P  + 
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV------AILRDDFRQNPSDVM 122

Query: 219 NESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
              G    M+C+     P P + W K    + +  +   I   +         IT     
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI---RGGKL----MITYTRKS 175

Query: 278 DSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKP 318
           D+G Y C   N  GE  + +  L +          P+F++  
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVLE-------RPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 56/218 (25%)

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW-- 360
                E  PP  +E P       G+   + CK + +P P I W+  G+ ++         
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60

Query: 361 -NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSN 418
             +   G  + +R+      + D G+Y C  +N+ GE ++ + +L + ++R         
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR--------- 111

Query: 419 KGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKV 478
                                                  R+ P  V ++  +  V+EC+ 
Sbjct: 112 ------------------------------------DDFRQNPSDVMVAVGEPAVMECQP 135

Query: 479 MSMY-EPSVTWMKEKNTVKEDNKHVV------HIEQVK 509
              + EP+++W K+ + + + ++ +        I   +
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR 173

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 79.5 bits (196), Expect = 4e-17
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 37/208 (17%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMSDRLSST--LVQDQSRLYYLAVLTIKNVQKSDSGE 70
           EG PT  IE       Y  G  ++       +  ++     L++L +       + D G 
Sbjct: 34  EGRPTPTIE------WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI-VHGRKSRPDEGV 86

Query: 71  YKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMEC-VLE 127
           Y  +A+N  GE  S         D  L+V       F + P   +   G+  VMEC    
Sbjct: 87  YVCVARNYLGEAVS--------HDASLEVAIL-RDDFRQNPSDVMVAVGEPAVMECQPPR 137

Query: 128 ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG 187
             P P I W +    ++D       +          +L I    K D G Y C   N +G
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGG--------KLMITYTRKSDAGKYVCVGTNMVG 189

Query: 188 ESNANIA-LNFQGGENGAGFAPSFIEKP 214
           E  + +A L            PSF++  
Sbjct: 190 ERESEVAELTVLE-------RPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-HI 505
           S+      P I E P  + +SK +   + CK      P++ W K    V+ D      H 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 506 EQVKDVSMNF 515
             +   S+ F
Sbjct: 62  MLLPSGSLFF 71

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  112 bits (280), Expect = 7e-28
 Identities = 48/303 (15%), Positives = 92/303 (30%), Gaps = 36/303 (11%)

Query: 108 PKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
           P  P +        V+ C   A     ++W +       +             T+   L 
Sbjct: 5   PPGPELVLNVSSTFVLTCSGSAP----VVWER------MSQEPPQEMAKAQDGTFSSVLT 54

Query: 167 INNPTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT 223
           + N T  D G Y C   +S G        + +     +   GF P+  E+  I   E  T
Sbjct: 55  LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP--DPTVGFLPNDAEELFIFLTE-IT 111

Query: 224 LIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
            I + C+ +  P+  V   +          + +  + Q     I          +  +Y 
Sbjct: 112 EITIPCRVTD-PQLVVTLHEKK----GDVALPVPYDHQRGFSGIF---------EDRSYI 157

Query: 284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI 343
           C       E +++       +          +   +    QG   + + C V    +   
Sbjct: 158 CKTTIGDREVDSDAYYVYRLQVSS---INVSVNAVQTVVRQGEN-ITLMCIVIGNEVVNF 213

Query: 344 VWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
            W +  KE  +  + ++  +          L +     ED+G Y CN+     +      
Sbjct: 214 EWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKA 273

Query: 403 LNI 405
           +NI
Sbjct: 274 INI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 94.4 bits (234), Expect = 1e-21
 Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 31/271 (11%)

Query: 36  KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDG 95
           +MS      + + Q   +  +VLT+ N+   D+GEY     +  G  +      +     
Sbjct: 32  RMSQEPPQEMAKAQDGTFS-SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY----- 85

Query: 96  KLKVPGGKAPRFPKKPTIH----QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM 151
            + VP       P           +   + + C +   P   +  +      E  G + +
Sbjct: 86  -IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH------EKKGDVAL 137

Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
                         +       +  +Y C       E +++    ++   +    + +  
Sbjct: 138 P--------VPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS----SINVS 185

Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC-E 270
                     G  I + C          +W    K      +           +      
Sbjct: 186 VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           I      DSGTY CNV     +      +NI
Sbjct: 246 IPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 73.6 bits (180), Expect = 1e-14
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 6/141 (4%)

Query: 63  VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVM 122
               +   Y       + E  S     +  +   + V            T+ + G+ + +
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINV------SVNAVQTVVRQGENITL 201

Query: 123 ECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
            C++  + + +  W    K                       L I +   +D G Y CN 
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261

Query: 183 CNSIGESNANIALNFQGGENG 203
             S+ +     A+N    E+G
Sbjct: 262 TESVNDHQDEKAINITVVESG 282

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 60.1 bits (145), Expect = 4e-10
 Identities = 32/312 (10%), Positives = 74/312 (23%), Gaps = 80/312 (25%)

Query: 216 IIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
           + P          +   + C         V W +  +   +          QD T+  + 
Sbjct: 3   VTPPGPELVLNVSSTFVLTCS----GSAPVVWERMSQEPPQEMAKA-----QDGTFSSVL 53

Query: 270 EITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
            +T+  G D+G Y C   +  G        L + +    +P         +         
Sbjct: 54  TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP---DPTVGFLPNDAEELFIFLTEI 110

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
             + + C+V   P   +    +  ++     + ++                    +   Y
Sbjct: 111 TEITIPCRV-TDPQLVVTLHEKKGDVAL--PVPYDHQRGFSGIF-----------EDRSY 156

Query: 387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKY 446
            C       E++++                                             Y
Sbjct: 157 ICKTTIGDREVDSD--------------------------------------------AY 172

Query: 447 SVLTLSVVPVIREV-PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHI 505
            V  L V  +   V      + + + + + C V+     +  W   +       + V   
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDF 232

Query: 506 EQVKDVSMNFEL 517
                  +   L
Sbjct: 233 LLDMPYHIRSIL 244

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  110 bits (275), Expect = 3e-27
 Identities = 48/314 (15%), Positives = 90/314 (28%), Gaps = 45/314 (14%)

Query: 104 APRFPKKPTIH--------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS 155
           +P  P  P+IH        + GD L + C+        + W   T   E     K     
Sbjct: 6   SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENKKNE--- 58

Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
                               G Y C+  N +  S   I +  +        A  F+    
Sbjct: 59  ---------WIQEKAEATRTGTYTCSNSNGLTSS---IYVFVRD------PAKLFLVGLP 100

Query: 216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPI 275
           +   E  +   ++C  +     +    + D     +    +   +   T           
Sbjct: 101 LFGKE-DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITI-----KNVKR 154

Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV 335
                  RC  + + G    +    ++     +   P           + G    + C +
Sbjct: 155 AYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKA-IPVVSVPETSHLLKKGDTFTVVCTI 212

Query: 336 KAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTGLYKCNIK 391
           K        +W     + Q   ++  N   +GD  + R   L +   R +D+G++ C   
Sbjct: 213 KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYAN 272

Query: 392 NFHGELNANLTLNI 405
           N  G  N   TL +
Sbjct: 273 NTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 93.3 bits (231), Expect = 3e-21
 Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 28/251 (11%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
               +  + + +G Y     N      S++ +   +                  P   ++
Sbjct: 58  EWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPA---------KLFLVGLPLFGKE 105

Query: 117 GDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
               ++ C L    +          K +        + K+       +    N       
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA----GITI---KNVKRAYHR 158

Query: 176 GNYRCNACNSIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
              RC A       +     L  +         P           + G    + C     
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIK---AIPVVSVPETSHLLKKGDTFTVVCTIKDV 215

Query: 235 PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EITDPIGPDSGTYRCNVKNEF 290
                  W K +   +  +++K     + D          I+     DSG + C   N F
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF 275

Query: 291 GESNANLNLNI 301
           G +N    L +
Sbjct: 276 GSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 67.8 bits (165), Expect = 9e-13
 Identities = 41/323 (12%), Positives = 83/323 (25%), Gaps = 80/323 (24%)

Query: 207 APSFIEKPRIIPNES------GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
           +P     P I P +S      G  + + C         V+W             K   NE
Sbjct: 6   SPGEPSPPSIHPAQSELIVEAGDTLSLTCIDP----DFVRW-----------TFKTYFNE 50

Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI 320
             +  +            +GTY C+  N    S   + + +        DP         
Sbjct: 51  MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFVR-------DPAKLFLVGLP 100

Query: 321 RSEQGGKLVVMECKVKAKPMPEIVWFH-EGKELQQTDRISWNVTLKGDKYHIRLEVKDPR 379
              +     ++ C +    + +      +GK L        N      K  I ++    R
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPN-----PKAGITIK-NVKR 154

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSV 439
                  +C  +            +   +   K+ ++  + I                  
Sbjct: 155 AYHRLCVRCAAQR-----------DGTWLHSDKFTLKVREAI------------------ 185

Query: 440 NPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWMKEKNTVKED 498
                         +PV+        + K  T  + C +  +    +  W+K     +  
Sbjct: 186 ------------KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233

Query: 499 NKHVVHIEQVKDVSMNFELWLGI 521
            +   +     D +   +  L I
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTI 256

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 21/62 (33%)

Query: 28  MYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
           +        ++    ++  +          LTI + +  DSG +   A N  G  + T  
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283

Query: 88  LN 89
           L 
Sbjct: 284 LK 285

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  106 bits (266), Expect = 7e-27
 Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 17/202 (8%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKAD-KLVKESSKIKIIVNEQDDTY 265
                 P       G      C+ +   +  ++ WF  + + +  + +   +V   DD+ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ 324
            +   I +    D+G Y+C V  E G  S A +N+ I            F   P  +  +
Sbjct: 63  TLT--IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFK 113

Query: 325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
            G+  V+ C V +   P I+W H+G+++     + + V          L+++  +K D G
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIRGIKKTDEG 168

Query: 385 LYKCNIKNFHGELNANLTLNIE 406
            Y+C  +           + + 
Sbjct: 169 TYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 97.2 bits (242), Expect = 1e-23
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 22/206 (10%)

Query: 103 KAPRFPKKPTIHQ--DGDLLVMECVLEASPM-PDIIWY--QGTKVIEDTGRIKMSKKSIG 157
           +  +    P+  +   G+     C +       DI W+   G K+  +  RI +    + 
Sbjct: 1   RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV----VW 56

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRI 216
            D     L I N   DD G Y+C      G  S A + +              F   P  
Sbjct: 57  NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTP 109

Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
              + G    + C   +   P + W    + V     ++ IV    + Y  I  I     
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LSNNYLQIRGIKK--- 164

Query: 277 PDSGTYRCNVKNEFGESNANLNLNIE 302
            D GTYRC  +          ++ + 
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 81.4 bits (201), Expect = 5e-18
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
            LTI N    D+G YK +   ++G  S  TVN+   +              F   PT   
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-----------KLMFKNAPTPQE 111

Query: 115 -QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
            ++G+  V+ C + +S  P IIW    + +     ++    S         L+I    K 
Sbjct: 112 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------YLQIRGIKKT 165

Query: 174 DGGNYRCNACNSIGESNANIAL 195
           D G YRC              +
Sbjct: 166 DEGTYRCEGRILARGEINFKDI 187

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 28/198 (14%), Positives = 50/198 (25%), Gaps = 49/198 (24%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKY 369
                  P       G+     C+V       +I WF    E    ++   +V    D  
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
              L + +   +D G+YKC +    G    A + + I                       
Sbjct: 62  S-TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------------------- 97

Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
                                      + +  P      + +  VI C V+S   P++ W
Sbjct: 98  -----------------------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIW 134

Query: 489 MKEKNTVKEDNKHVVHIE 506
             +   V         + 
Sbjct: 135 KHKGRDVILKKDVRFIVL 152

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  106 bits (266), Expect = 2e-26
 Identities = 32/207 (15%), Positives = 59/207 (28%), Gaps = 37/207 (17%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-IIVNEQDDTY 265
                  P      +G  +++ C+ +  P  + +WFK +K +   +  + I         
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVK-- 75

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGE---SNANLN------LNIEAEAEPEGDPPTFIE 316
                       D+G Y C V N F       + L+          +             
Sbjct: 76  ------------DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123

Query: 317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
           +P  +    G  +V++C     P+P   WF     L    +                 V 
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL-------------YMVP 170

Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTL 403
               E  G Y C++ N     ++    
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVE 197

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 95.3 bits (237), Expect = 1e-22
 Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 38/221 (17%)

Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           +  +    P       G  + + C     P     W++          I     S     
Sbjct: 17  RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK------MNKEIPNGNTS----- 65

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIA---------LNFQGGENGAGFAPSFI 211
               L  N     D G Y C   N+     +  +            +  +  +       
Sbjct: 66  ---ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122

Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEI 271
            +P       G+ + ++C     P P  +WFK +  +   +K   +             +
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM-------------V 169

Query: 272 TDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP 312
                   GTY C+V N+    ++     I  E    G P 
Sbjct: 170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 88.0 bits (218), Expect = 5e-20
 Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 45/200 (22%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
                  P+ ++   G+ V + C+    P  +  WF   KE+   +              
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE----------- 66

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
             L       +D G Y C + N      +    L++  +                     
Sbjct: 67  --LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP-------------------- 104

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                        F++           I   P    +    T+V++C  +    P   W 
Sbjct: 105 -----------ESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWF 153

Query: 490 KEKNTVKEDNKHVVHIEQVK 509
           K +  +  + K +  +  V 
Sbjct: 154 KNELPLTHETKKLYMVPYVD 173

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 88.0 bits (218), Expect = 5e-20
 Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 21/146 (14%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSS-----TVNLNFSEEDGKLKVPGGKAPRFPKKP 111
            L    V   D+G Y     N      S      V          +        +   +P
Sbjct: 66  ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 112 TIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169
           T      G  LV++CV   SP+P   W++    +    +                  +  
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------------LYMVPY 171

Query: 170 PTKDDGGNYRCNACNSIGESNANIAL 195
              +  G Y C+  N     ++    
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVE 197

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 9/63 (14%), Positives = 17/63 (26%)

Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           S   +     I   P+   +   + V + C+          W K    +   N   +   
Sbjct: 11  SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN 70

Query: 507 QVK 509
            V 
Sbjct: 71  AVH 73

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 9/48 (18%), Positives = 12/48 (25%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA 104
           +  +  V     G Y     N      S       +E   L  P  K 
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKE 213

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  109 bits (274), Expect = 2e-26
 Identities = 41/323 (12%), Positives = 88/323 (27%), Gaps = 52/323 (16%)

Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---- 164
           KK  + + GD + + C           W    ++     +     K   K          
Sbjct: 1   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 60

Query: 165 --------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
                   L I N   +D   Y C   +   E    +            F  +      +
Sbjct: 61  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------FGLTANSDTHL 108

Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
           +  +S TL     +      P V+         +  K   +   +               
Sbjct: 109 LQGQSLTL---TLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQ------------- 152

Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEP-------EGDPPTFIEKPKIRSEQGGKLV 329
            DSGT+ C V     +    +++ + A  +        EG+   F        E+     
Sbjct: 153 -DSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211

Query: 330 VMECKVKAKPMPEIV----WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
            +  + +     +        ++   +++  +       K    H+ L    P+   +G 
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271

Query: 386 YKCNIKNFHGELNANLTLNIEMV 408
               ++   G+L+  + L +   
Sbjct: 272 LTLALEAKTGKLHQEVNLVVMRA 294

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  103 bits (258), Expect = 2e-24
 Identities = 45/388 (11%), Positives = 100/388 (25%), Gaps = 83/388 (21%)

Query: 17  TKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAK 76
             +I  N    +    S L        +L    +       L IKN++  DS  Y    +
Sbjct: 33  QIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN-----FPLIIKNLKIEDSDTYICEVE 87

Query: 77  NKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPDII 135
           ++  E    V            +              H   G  L +         P + 
Sbjct: 88  DQKEEVQLLV----------FGLT--------ANSDTHLLQGQSLTLTLESPPGSSPSVQ 129

Query: 136 WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
                      G+                L ++     D G + C    +  +    I +
Sbjct: 130 CRSPRGKNIQGGKT---------------LSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174

Query: 196 NFQGGEN---------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK 246
                +          G     SF     +        +  + + ++  +  + +   +K
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234

Query: 247 --LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
              VK  ++   +   +     +      P    SG     ++ + G+ +  +NL +   
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV--- 291

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
                                     + C+V     P+++              S  +  
Sbjct: 292 MRATQLQKN-----------------LTCEVWGPTSPKLML-------------SLKLEN 321

Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
           K  K   R +       + G+++C + +
Sbjct: 322 KEAKVSKREKAVWVLNPEAGMWQCLLSD 349

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 40/177 (22%)

Query: 9   SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
            +  E   + +    F +       +          L   +    +L  L     Q + S
Sbjct: 214 WWQAERASSSKSWITFDLK---NKEVSVKRVTQDPKLQMGKKLPLHL-TLPQALPQYAGS 269

Query: 69  GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA 128
           G   +  + K G+    VNL        ++    +                  + C +  
Sbjct: 270 GNLTLALEAKTGKLHQEVNLV------VMRATQLQ----------------KNLTCEVWG 307

Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS 185
              P ++      +  +    K+SK          R +       + G ++C   +S
Sbjct: 308 PTSPKLML----SLKLENKEAKVSK----------REKAVWVLNPEAGMWQCLLSDS 350

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 25/198 (12%), Positives = 52/198 (26%), Gaps = 70/198 (35%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR------------- 372
           G  V + C    K   +  W +  +     ++ S+ +T    K + R             
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSF-LTKGPSKLNDRADSRRSLWDQGNF 67

Query: 373 -LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTR 431
            L +K+ + ED+  Y C                          V   K  V         
Sbjct: 68  PLIIKNLKIEDSDTYIC-------------------------EVEDQKEEV--------- 93

Query: 432 SYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKE 491
                              L V  +         + + +++ +  +      PSV     
Sbjct: 94  ------------------QLLVFGLT--ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSP 133

Query: 492 KNTVKEDNKHVVHIEQVK 509
           +    +  K  + + Q++
Sbjct: 134 RGKNIQGGK-TLSVSQLE 150

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  108 bits (270), Expect = 4e-26
 Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 38/267 (14%)

Query: 58  LTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-- 114
           + +  ++  D G Y    A    G   S +NL        +  P                
Sbjct: 94  IRLSRLELEDEGVYICEFATFPTGNRESQLNLTV------MAKPTNWIEGTQAVLRAKKG 147

Query: 115 QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
           QD  +LV  C      P   + W    K   +   I+    ++   T + R  +    + 
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTV---TVISRYRLVPSREA 204

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCS 232
              +  C     +     ++ LN Q       + P   IE            +++ CK  
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQ-------YEPEVTIEGFDGNWYLQRMDVKLTCKAD 257

Query: 233 AKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG 291
           A P   E  W   +  + +  +       Q+ T      I       +GTY C   N  G
Sbjct: 258 ANPPATEYHWTTLNGSLPKGVEA------QNRTLFFKGPINYS---LAGTYICEATNPIG 308

Query: 292 ESNANLNLNIEAEAEPEGDPPTFIEKP 318
             +  + +NI        +        
Sbjct: 309 TRSGQVEVNIT-------EAAALEHHH 328

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 99.8 bits (248), Expect = 3e-23
 Identities = 52/341 (15%), Positives = 88/341 (25%), Gaps = 63/341 (18%)

Query: 101 GGKAPRFPKKPTIHQD------GDLLVMECVLEASPMPD----IIWY------------- 137
           G +  R P +     D      G  +V+ C             + W              
Sbjct: 7   GQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIY 66

Query: 138 ---QGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN-AN 192
               G  V+     R++  + S    T    + ++    +D G Y C        +  + 
Sbjct: 67  NPSMGVSVLAPYRERVEFLRPSFTDGT----IRLSRLELEDEGVYICEFATFPTGNRESQ 122

Query: 193 IALNFQGGENGAGFAPSFIEKP-----RIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK 246
           + L            P+   +      R    +   ++   C   + KP   V W    K
Sbjct: 123 LNLTVMA-------KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK 175

Query: 247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAE 306
              E  +I+               +         +  C V         +L LN++ E  
Sbjct: 176 GEAEYQEIRNPNGTVTVISRYR--LVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE-- 231

Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLK 365
               P   IE            V + CK  A P   E  W      L +           
Sbjct: 232 ----PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ------ 281

Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                 +  +        G Y C   N  G  +  + +NI 
Sbjct: 282 NRTLFFKGPIN---YSLAGTYICEATNPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 18/177 (10%), Positives = 40/177 (22%), Gaps = 32/177 (18%)

Query: 42  SSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
              +      +  ++   +   +++       I          ++ LN            
Sbjct: 180 YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY--------- 230

Query: 102 GKAPRF---PKKPTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIG 157
              P           +     + + C  +A+P   +  W      +      +       
Sbjct: 231 --EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ------- 281

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP 214
             T               G Y C A N IG  +  + +N          A +     
Sbjct: 282 NRTLFF---KGPINYSLAGTYICEATNPIGTRSGQVEVNIT-------EAAALEHHH 328

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  104 bits (260), Expect = 4e-26
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 25/203 (12%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
               +  P  +    G  +++ C       P+++W K   +V+   ++ I V+EQ     
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
           +   +      D+G Y C V++      +  + L +E         P F  +PK  +   
Sbjct: 62  LS--LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVPP 112

Query: 326 GKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG 384
                + C+    P P  IVW+    ++                      +       + 
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPSVLNVTGVTQST 159

Query: 385 LYKCNIKNFHGELNAN-LTLNIE 406
           ++ C   N  G  ++   T++++
Sbjct: 160 MFSCEAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 98.3 bits (245), Expect = 4e-24
 Identities = 29/204 (14%), Positives = 72/204 (35%), Gaps = 28/204 (13%)

Query: 104 APRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             +    P       G  + + C +E    PDI W +   V+++  ++ +    + +  +
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI---PVSEQHW 58

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNE 220
           +  L + +  + D G Y C   +      +  + L  +G        P F  +P+ +   
Sbjct: 59  IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVP 111

Query: 221 SGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
                Q+ C+    P P  + W++    +               +  ++  +T      S
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP----------APSPSVL-NVTGV--TQS 158

Query: 280 GTYRCNVKNEFGESNAN-LNLNIE 302
             + C   N  G +++    ++++
Sbjct: 159 TMFSCEAHNLKGLASSRTATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 84.1 bits (208), Expect = 5e-19
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 50/203 (24%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
               +  P   +   G+ V + C V+    P+I W  +G  +Q  D++   + +    + 
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--IPVSEQHWI 59

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT 430
             L +K   + D G Y C +++                                      
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGET---------------------------------- 85

Query: 431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP-SVTWM 489
                      +  +   LT+  VP     PK + +       + C+ +   EP ++ W 
Sbjct: 86  -----------EISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW 134

Query: 490 KEKNTV--KEDNKHVVHIEQVKD 510
           +    +     +  V+++  V  
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQ 157

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 80.2 bits (198), Expect = 9e-18
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 31/170 (18%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G++++  D+L   + +      ++  L++K+V++SD+G Y    ++      S    
Sbjct: 37  VKDGAVVQNLDQLYIPVSEQH----WIGFLSLKSVERSDAGRYWCQVEDGGETEISQP-- 90

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPD-IIWYQGTKVIED 145
                   L V G   P F  +P            + C     P P  I+W++GT  I  
Sbjct: 91  ------VWLTVEG--VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG 142

Query: 146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
                                +N         + C A N  G +++  A 
Sbjct: 143 PAP--------------SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 178

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
             +   P  +T+S+ + V + C V  M EP + W+K+   V+  ++  + + +   + 
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  104 bits (260), Expect = 7e-26
 Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 13/208 (6%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           + +       +       +++ C  S    P V+W                +    +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 267 IICEITDPIGP----DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
                          D+GTY C V  E G S   + + +         PP+        S
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-----PPSKPTVNIPSS 118

Query: 323 EQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDP 378
              G   V+ C      P  E  WF +G  +    + +   +      +     L     
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIE 406
              DTG Y C  +N +G    +  + +E
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 97.3 bits (242), Expect = 2e-23
 Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 24/211 (11%)

Query: 110 KPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             T+H         + + + + C       P + W                  +  +D  
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 162 LLR---LEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRI 216
                 +   + T++D G Y C      G       + L            PS       
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL-------VPPSKPTVNIP 116

Query: 217 IPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EIT 272
                G    + C      P  E  WFK   ++  + K     +                
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFD 176

Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                D+G Y C  +N +G    +  + +EA
Sbjct: 177 PLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 90.0 bits (223), Expect = 8e-21
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQ 115
           +T K+V + D+G Y  +   + G     V +       KL V     P  P     +   
Sbjct: 70  ITFKSVTREDTGTYTCMVSEEGGNSYGEVKV-------KLIVLV--PPSKPTVNIPSSAT 120

Query: 116 DGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGR--IKMSKKSIGKDTYLLRLEINNPTK 172
            G+  V+ C   + SP  +  W++   V+    +     S  S   +     L  +  + 
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180

Query: 173 DDGGNYRCNACNSIGESNANIALNFQGGE 201
            D G Y C A N  G    + A+  +  E
Sbjct: 181 SDTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 24/196 (12%), Positives = 44/196 (22%), Gaps = 49/196 (25%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
             T               V + C       P + W  +  +  +    +  +T   +   
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 371 IR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG 426
                 +  K   +EDTG Y C +    G     + +                       
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK---------------------- 101

Query: 427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPS 485
                                 L + V P    V    + +     V+ C          
Sbjct: 102 ----------------------LIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSE 139

Query: 486 VTWMKEKNTVKEDNKH 501
            TW K+   +  + K 
Sbjct: 140 YTWFKDGIVMPTNPKS 155

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
           +  G ++  + + +         L      L    +  SD+GEY   A+N  G   ++  
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202

Query: 88  LN 89
           + 
Sbjct: 203 VR 204

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  107 bits (267), Expect = 1e-25
 Identities = 27/201 (13%), Positives = 67/201 (33%), Gaps = 19/201 (9%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P+   +      + G  + ++C+   +   +  W   +  +++S+ +            +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE--LEQSATVMKSGGLPSLGLTL 216

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK 327
              +T  +  +     C  +N+ G +  ++ +N            +F    ++ +     
Sbjct: 217 A-NVTSDL--NRKNVTCWAENDVGRAEVSVQVN-----------VSFPASVQLHTAVEMH 262

Query: 328 LVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR---LEVKDPRKEDTG 384
              +   V  +P P + W   G  L +T  I            +R   L +  P   + G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322

Query: 385 LYKCNIKNFHGELNANLTLNI 405
            Y     N  G+ +A++    
Sbjct: 323 NYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 97.5 bits (242), Expect = 2e-22
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 20/188 (10%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           GD +++ C +E   +    W         T    + K        L     N  +  +  
Sbjct: 173 GDDVLLRCQVEGRGLEQAGWILTELEQSAT----VMKSGGLPSLGLTL--ANVTSDLNRK 226

Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
           N  C A N +G +  ++ +N            SF    ++          +      +P 
Sbjct: 227 NVTCWAENDVGRAEVSVQVN-----------VSFPASVQLHTAVEMHHWCIPFSVDGQPA 275

Query: 237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC---EITDPIGPDSGTYRCNVKNEFGES 293
           P ++W     ++ E+S I     E      +      +  P   ++G Y     N FG++
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335

Query: 294 NANLNLNI 301
           +A++    
Sbjct: 336 SASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.4 bits (221), Expect = 1e-19
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 19/164 (11%)

Query: 39  DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLK 98
           +   S  V     L  L +         +       A+N  G    +V +N         
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN--------- 246

Query: 99  VPGGKAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
                   FP         +     +   ++  P P + W     V+ +T  I       
Sbjct: 247 ------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300

Query: 157 GKDTYLLR--LEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
             +  +    L +N PT  + GNY   A N  G+++A+I   F 
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 23/213 (10%), Positives = 46/213 (21%), Gaps = 55/213 (25%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
             PT   +    S   G  V++ C+V+ + + +  W     E   T              
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM---KSGGLPSLG 213

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
                V      +     C  +N  G    ++ +N                         
Sbjct: 214 LTLANVT--SDLNRKNVTCWAENDVGRAEVSVQVN------------------------- 246

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                                           ++ T  +     I   V     PS+ W+
Sbjct: 247 -------------------------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL 281

Query: 490 KEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV 522
              + + E +       +           L + 
Sbjct: 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 314

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQS-RLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
              GS+L  +  + +  ++  +        L +      ++G Y ++A N  G+ S+++ 
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340

Query: 88  LNFSE 92
             F +
Sbjct: 341 AAFMD 345

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  102 bits (256), Expect = 2e-25
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 14/208 (6%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
            S       +       I++ C  S    P V+W                +         
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 268 IC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
                   +     D+G Y C V  E G++   +++++         PP+        S 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-----PPSKPTISVPSSV 116

Query: 324 QGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTD----RISWNVTLKGDKYHIRLEVKDP 378
             G   V+ C      P  E  WF +G  +   D    R   N +   D     L     
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIE 406
              D+G Y C  +N +G    +   +++
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 93.1 bits (231), Expect = 6e-22
 Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 25/212 (11%)

Query: 110 KPTIHQ--------DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           K +++         + + + + C       P + W                  +   D  
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 162 LLR---LEINNPTKDDGGNYRCNACNSIGE--SNANIALNFQGGENGAGFAPSFIEKPRI 216
                 +  ++ T+ D G Y C      G+     +I L            PS       
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL-------VPPSKPTISVP 113

Query: 217 IPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC----EI 271
                G    + C      P  E  WFK    +  +   K                    
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173

Query: 272 TDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                 DSG Y C  +N +G +  +   +++A
Sbjct: 174 DPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 205

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 85.8 bits (212), Expect = 2e-19
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIH 114
            +T  +V + D+GEY  +   + G+    V++        L V     P  P     +  
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI-------HLTVLV--PPSKPTISVPSSV 116

Query: 115 QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---LEINNP 170
             G+  V+ C   + SP  +  W++    +      K         T   +   L  +  
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176

Query: 171 TKDDGGNYRCNACNSIGESNANIALN 196
           T  D G Y C A N  G +  + A +
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAH 202

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 17/208 (8%), Positives = 47/208 (22%), Gaps = 49/208 (23%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
            +             + + + C       P + W             +  +T        
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 372 R----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGL 427
                +      ++D G Y C +    G+    ++++                       
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH----------------------- 98

Query: 428 VKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY-EPSV 486
                                LT+ V P    +    +++     V+ C           
Sbjct: 99  ---------------------LTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137

Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMN 514
           +W K+  ++   +            +++
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTID 165

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  100 bits (251), Expect = 1e-24
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 17/212 (8%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE--VKWFKADKLVKESSKIKII 257
           G       P   E+   +  + G  + + C        +   +W   +  V  +   +  
Sbjct: 1   GPGSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60

Query: 258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN---LNLNIEAEAEPEGDPPTF 314
           V++ +    I     +    D G Y C V +     +     + L    E   +  P   
Sbjct: 61  VSQTNGNLYI----ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADI 116

Query: 315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLE 374
           + + K      G+ V +EC     P+P+I W    + +  T  IS             L+
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS-----TSGA---VLK 168

Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           + + + ED G+Y+C  +N  G+      + ++
Sbjct: 169 IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 92.3 bits (229), Expect = 1e-21
 Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 28/210 (13%)

Query: 105 PRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWY-----QGTKVIEDTGRIKMSKKSI 156
           P  P++     + + G  +V+ C        D+ +          +  D  R        
Sbjct: 9   PFPPEERPEVRVKE-GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG- 66

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA---LNFQGGENGAGFAPSFIEK 213
                   L I N    D GNY C   +     +       L          +    + +
Sbjct: 67  -------NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119

Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
            + +    G  + ++C     P P+++W K  + +  +++I             I  I  
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST-----SGAVLKIFNIQL 174

Query: 274 PIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
               D G Y C  +N  G+      + ++A
Sbjct: 175 E---DEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 14/167 (8%)

Query: 37  MSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEED 94
           + +     +  D+ R        L I NV+ SD G Y     + +   S           
Sbjct: 45  LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKF-IPLIP 103

Query: 95  GKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS 152
              +           +        G  + +EC    +P+PDI W +  + +  T  I  S
Sbjct: 104 IPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS 163

Query: 153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
                       L+I N   +D G Y C A N  G+      +  Q 
Sbjct: 164 GAV---------LKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 27/206 (13%), Positives = 48/206 (23%), Gaps = 47/206 (22%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV--WFHEGKELQQTDRISWNVTLKGDK 368
            P   E+      + GK +V+ C        ++   W      +  T      V+     
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLV 428
               L + +    D G Y C + +                                    
Sbjct: 68  ----LYIANVEASDKGNYSCFVSSPSIT-------------------------------K 92

Query: 429 KTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTW 488
              S        P+       T      I    K V     + V +EC  +    P + W
Sbjct: 93  SVFSKFIPLIPIPER-----TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW 147

Query: 489 MKEKNTVKEDNKHVV-----HIEQVK 509
            K    +    +         I  ++
Sbjct: 148 RKVLEPMPSTAEISTSGAVLKIFNIQ 173

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 99.6 bits (248), Expect = 2e-24
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
             F+  P  I    G    ++C+   +   PEV W +  ++++ +   +  V   +D  +
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 267 IICE-----ITDPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKP 318
                    IT     D+G Y+C V             + L            P F+E+P
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG---------LPYFLEEP 113

Query: 319 KIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKD 377
           + R+        + C+ +  P P +++W  +   L          +L             
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSL-----------HV 162

Query: 378 PRKEDTGLYKCNIKNFHGE-LNANLTLNIE 406
           P    T  + C   N  G   +   T+ + 
Sbjct: 163 PGLNKTSSFSCEAHNAKGVTTSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 84.2 bits (208), Expect = 5e-19
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 37/206 (17%)

Query: 105 PRFPKKP--TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             F   P       G    + C L+     P++ W +  +++E     +        +  
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 162 LL----RLEINNPTKDDGGNYRCNACNSIGESNANIA-LNFQGGENGAGFAPSFIEKPRI 216
                 +L I +    D G Y+C          +    +  +G        P F+E+P  
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEPED 115

Query: 217 IPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIK-----IIVNEQDDTYEIICE 270
               + T   + C+    P P ++ W +    +  +          +             
Sbjct: 116 RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--------- 166

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNAN 296
                   + ++ C   N  G + + 
Sbjct: 167 -------KTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 56/212 (26%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           +   F+  P   +   G    + C+++ +   PE+ W  +G+ L+  D     V L  D+
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 369 YHI-----RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVG 423
                   +L +   +  DTG Y+C +   H                             
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQT--------------------------- 93

Query: 424 KMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE 483
                 ++  +              + L  +P   E P+  T++      + C+     E
Sbjct: 94  ----FVSQPGY--------------VGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPE 135

Query: 484 P-SVTWMKEKNTVKEDNKH----VVHIEQVKD 510
           P  + W+++   +     H     +H+  +  
Sbjct: 136 PVDLLWLQDAVPLATAPGHGPQRSLHVPGLNK 167

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 78.0 bits (192), Expect = 7e-17
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 28/173 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLA---VLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
              G +L+++D   + +   +           L I ++Q SD+G+Y+ +    +    S 
Sbjct: 38  LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQ 97

Query: 86  VNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMP-DIIWYQGTKV 142
                    G + + G   P F ++P            + C  +  P P D++W Q    
Sbjct: 98  P--------GYVGLEG--LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP 147

Query: 143 IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
           +                     L +         ++ C A N+ G + +  A 
Sbjct: 148 LATAPGHGPQ----------RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT 188

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 99.7 bits (248), Expect = 9e-24
 Identities = 39/311 (12%), Positives = 78/311 (25%), Gaps = 63/311 (20%)

Query: 108 PKKPTIH-----QDGDLLVMECVLEA---SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
              P +      +      + C L+         +    G + +  T             
Sbjct: 4   ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT------YGNDS 57

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIP 218
                        +      C              +        +  AP+  + KP +  
Sbjct: 58  FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY-----SFPAPNVILTKPEVSE 112

Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
               T+     KC A PR +V       + +   +++ +    +D+     C  T     
Sbjct: 113 GTEVTV-----KCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSAT----- 162

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG--GKLVVMECKV 335
                   V  +    N    L +          P   E+    +            C+ 
Sbjct: 163 ------LEVAGQLIHKNQTRELRVLY-------GPRLDERDCPGNWTWPENSQQTPMCQA 209

Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
              P+PE+    +G            VT                ++  G Y C  ++  G
Sbjct: 210 WGNPLPELKCLKDGTFPLPIGESV-TVT----------------RDLEGTYLCRARSTQG 252

Query: 396 ELNANLTLNIE 406
           E+   +T+N+ 
Sbjct: 253 EVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 35/292 (11%), Positives = 70/292 (23%), Gaps = 75/292 (25%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           P  +  PR++  E  T   + C      P  E +      L     ++   V   +D++ 
Sbjct: 6   PPQLVSPRVL--EVDTQGTVVCSLDGLFPVSEAQV----HLALGDQRLNPTVTYGNDSFS 59

Query: 267 IICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEP--EGDPPTFIEKPKIRSE 323
               ++       +    C V            + I +   P      P   E       
Sbjct: 60  AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------- 112

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
             G  V ++C+      P       G   Q     +             L +K   +++ 
Sbjct: 113 --GTEVTVKCEAH----PRAKVTLNGVPAQPLGPRAQ------------LLLKATPEDNG 154

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
             + C+                                V    + K ++        P+ 
Sbjct: 155 RSFSCSATL----------------------------EVAGQLIHKNQTRELRVLYGPRL 186

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTV 495
                         R+ P   T  +       C+      P +  +K+    
Sbjct: 187 ------------DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 27/145 (18%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKV---PGGKAPRFPKKPTIH 114
           L +K   + +   +   A  +        N        +L+V   P       P   T  
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR-----ELRVLYGPRLDERDCPGNWTW- 197

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
            +       C    +P+P++   +        G                  E    T+D 
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDL 239

Query: 175 GGNYRCNACNSIGESNANIALNFQG 199
            G Y C A ++ GE    + +N   
Sbjct: 240 EGTYLCRARSTQGEVTREVTVNVLS 264

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 92.7 bits (230), Expect = 9e-23
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKESS-----KIKIIV 258
              FIEKP+    + G  I    K  A+    +P +KWFK   +   S      ++K   
Sbjct: 7   GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66

Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314
                 Y    +I       +G YRC V  +    + + +L +        +  + 
Sbjct: 67  ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSG 122

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 82.0 bits (202), Expect = 6e-19
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVT 363
                  FIEKP+  + + G+ +    KVKA+ +   P I WF  GK +    +   ++ 
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFK-GKWMDLASKAGKHLQ 61

Query: 364 LK------GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           LK         Y   +++   +    G Y+C +       + +  L + 
Sbjct: 62  LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 100 PGGKAPRFPKKPTIH--QDGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKM 151
            G     F +KP     + G+ +     ++A  +   P I W++G  +    +    +++
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 152 SKK-SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
            +        Y   ++I     +  GNYRC         + +  L 
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 36  KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEE 93
           K    L      ++    Y   + I   + + +G Y+     K+   S + +L   E 
Sbjct: 55  KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 91.5 bits (227), Expect = 6e-22
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
            SG+   +  N     N +  L   AE +P    P F +         G     +CKV+ 
Sbjct: 9   ASGSSPTSPINANKVENEDAFLEEVAEEKPH-VKPYFTKTILDMEVVEGSAARFDCKVEG 67

Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
            P PE++WF +   ++++      +    +     L + +   +D   Y C   N  GE 
Sbjct: 68  YPDPEVMWFKDDNPVKESRHFQ--IDYDEEGNC-SLTISEVCGDDDAKYTCKAVNSLGEA 124

Query: 398 NANLTLNIE 406
                L +E
Sbjct: 125 TCTAELLVE 133

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 83.4 bits (206), Expect = 4e-19
 Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 11/154 (7%)

Query: 171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK 230
            +   G+   +  N+    N +  L  +  E      P F +    +    G+  +  CK
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLE-EVAEEKPHVKPYFTKTILDMEVVEGSAARFDCK 64

Query: 231 CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC--EITDPIGPDSGTYRCNVKN 288
               P PEV WFK D  VKES   +I  +E+       C   I++  G D   Y C   N
Sbjct: 65  VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG-----NCSLTISEVCGDDDAKYTCKAVN 119

Query: 289 EFGESNANLNLNIEA---EAEPEGDPPTFIEKPK 319
             GE+     L +E    E E EG+     E+ +
Sbjct: 120 SLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 79.5 bits (196), Expect = 9e-18
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 13/142 (9%)

Query: 60  IKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--QDG 117
           +   + S S     I  NK     + +     EE  + K      P F K        +G
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFL-----EEVAEEKPH--VKPYFTKTILDMEVVEG 56

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
                +C +E  P P+++W++    ++++   ++     G  +    L I+    DD   
Sbjct: 57  SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS----LTISEVCGDDDAK 112

Query: 178 YRCNACNSIGESNANIALNFQG 199
           Y C A NS+GE+     L  + 
Sbjct: 113 YTCKAVNSLGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +   + +K S      +  D+        LTI  V   D  +Y   A N  GE + T  L
Sbjct: 76  FKDDNPVKESRHF--QIDYDEEGNC---SLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130

Query: 89  N 89
            
Sbjct: 131 L 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
           ++ +     V P   +    + + +      +CKV    +P V W K+ N VKE     +
Sbjct: 31  EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 90

Query: 504 HIEQ 507
             ++
Sbjct: 91  DYDE 94

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 94.2 bits (234), Expect = 8e-22
 Identities = 46/303 (15%), Positives = 92/303 (30%), Gaps = 55/303 (18%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
           P   ++ Q  + + + C +   P      W+      + +                    
Sbjct: 8   PPWVSVFQ-EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYR 51

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
           I + + +D G YRC    S    +  I L               ++    +  E   L  
Sbjct: 52  ITSASVNDSGEYRCQRGLS--GRSDPIQLEIH-------RGWLLLQVSSRVFTEGEPLA- 101

Query: 227 MKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
           ++C     K    V +++  K  K            +    I           +GTY C+
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFH--------WNSNLTI----LKTNISHNGTYHCS 149

Query: 286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVW 345
              +   ++A +++ ++         P           +G  LV + C+ K       + 
Sbjct: 150 GMGKHRYTSAGISVTVKELFP----APVLNASVTSPLLEGN-LVTLSCETKLLLQRPGLQ 204

Query: 346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN---ANLT 402
            +    +        + TL+G       ++   R+ED+GLY C      G +      L 
Sbjct: 205 LYFSFYMG-------SKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELE 257

Query: 403 LNI 405
           L +
Sbjct: 258 LQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 50/241 (20%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
             I +   +DSGEY+   +      S  + L        L+V             +  +G
Sbjct: 50  YRITSASVNDSGEYR--CQRGLSGRSDPIQLEIHRGWLLLQVS----------SRVFTEG 97

Query: 118 DLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           + L + C       + ++++Y+  K            K    ++    L I        G
Sbjct: 98  EPLALRCHAWKDKLVYNVLYYRNGKAF----------KFFHWNS---NLTILKTNISHNG 144

Query: 177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR 236
            Y C+       ++A I++  +       F    +      P   G L+ + C+     +
Sbjct: 145 TYHCSGMGKHRYTSAGISVTVK-----ELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ 199

Query: 237 PEV-----KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEF 290
                    ++   K ++  +            Y+I           DSG Y C    E 
Sbjct: 200 RPGLQLYFSFYMGSKTLRGRN--------TSSEYQI-----LTARREDSGLYWCEAATED 246

Query: 291 G 291
           G
Sbjct: 247 G 247

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 38/201 (18%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
                +P  +       + + C+    P     +WF      + S+    I +   +   
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVN--- 58

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                      DSG YRC            L ++              + +   R    G
Sbjct: 59  -----------DSGEYRCQRGLSGRSDPIQLEIH----------RGWLLLQVSSRVFTEG 97

Query: 327 KLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           + + + C     K +  ++++  GK  +                 I            G 
Sbjct: 98  EPLALRCHAWKDKLVYNVLYYRNGKAFKFFH--------WNSNLTIL----KTNISHNGT 145

Query: 386 YKCNIKNFHGELNANLTLNIE 406
           Y C+    H   +A +++ ++
Sbjct: 146 YHCSGMGKHRYTSAGISVTVK 166

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361
              +         + KP+  +   G+     C    +P+P + W  +G+ L  + R    
Sbjct: 5   HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ-- 62

Query: 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           VT    K     E+   +  D G Y   ++N  G+  A  TL I+
Sbjct: 63  VTTTKYKS--TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 78.2 bits (193), Expect = 9e-18
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
              A   + KPR +    G   +  C    +P P V W +  +++  S++ ++   +   
Sbjct: 11  TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70

Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIE 302
           T+EI       +   D G Y   V+N  G+  A   L I+
Sbjct: 71  TFEI-----SSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           A R   KP      +G+     C  +  P+P + W +  +V+  + R +++        Y
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKY 68

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
               EI++    D GNY     NS G+  A   L  Q
Sbjct: 69  KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             KG +L  S R   T  + +S         I +VQ SD G Y V+ +N  G+  +   L
Sbjct: 49  LRKGQVLSTSARHQVTTTKYKS------TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

Query: 89  N 89
            
Sbjct: 103 T 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
               +     ++   I   P+ +T+ + ++    C       P+VTW+++   +    +H
Sbjct: 2   HHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61

Query: 502 VVHIEQVKDVS 512
              +   K  S
Sbjct: 62  --QVTTTKYKS 70

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
                  P  I+ P+ +  + G+ V +  KV         W    K++Q+++     + +
Sbjct: 1   GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH----MKV 56

Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           +  +   +L +   R+E  G Y   ++N  G   A + L + 
Sbjct: 57  ENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  I+ P      +G  +++  K +        W K  K ++ES  +K+     ++  +
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE--NSENGSK 64

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
           +   I        G Y   V+N+ G   A +NL +  + +P    P+
Sbjct: 65  LT--ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPS 109

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 100 PGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
            G   P+  + P     + G+ + +   +  +      W +  K I+++  +K+      
Sbjct: 3   SGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE----- 57

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                 +L I    ++  G Y     N +G   A + L 
Sbjct: 58  NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                ++ S+ +     ++ S+L      TI   ++   G Y ++ +NK G   + VNL
Sbjct: 42 MKFRKQIQESEHMKVENSENGSKL------TILAARQEHCGCYTLLVENKLGSRQAQVNL 95

Query: 89 N 89
           
Sbjct: 96 T 96

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVS 512
           P I + P+   +   ++V +  KV      + TWMK +  ++E     + +E  ++ S
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH--MKVENSENGS 63

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
            G  P F++ P   + Q GKL  M+CKV   P P++ W  +GK ++        + ++ +
Sbjct: 6   SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHK--MLVREN 63

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             H  L ++     D G+Y C   N  G+ + +L L + 
Sbjct: 64  GVH-SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 199 GGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIV 258
           G    +GF P F++ P  +  + G L +M CK S  P P++ W    K V+  S  K++V
Sbjct: 1   GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60

Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
            E      II  +T     D+G Y C   N  G+++ +L L +      E  P +
Sbjct: 61  RENGVHSLIIEPVTS---RDAGIYTCIATNRAGQNSFSLELVVA---AKESGPSS 109

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
           G  P F + P     Q+G L  M+C +   P PD+ W    K +      KM  +  G  
Sbjct: 7   GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
           +    L I   T  D G Y C A N  G+++ ++ L     E+G
Sbjct: 67  S----LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
              G  ++        + ++      +  L I+ V   D+G Y  IA N+ G+ S ++ L
Sbjct: 44  QLDGKPVRPDSAHKMLVRENG-----VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98

Query: 89  NFSEEDGK 96
             + ++  
Sbjct: 99  VVAAKESG 106

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           P   + P  +T+ + K   ++CKV  +  P ++W  +   V+ D+ H + + +
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 87.6 bits (217), Expect = 5e-21
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP  +   +        +   E  V+  P P + W H G+ L+++  I      +G+   
Sbjct: 8   PPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             L    P   + G Y    KN  G  N  +  + 
Sbjct: 65  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 81.4 bits (201), Expect = 8e-19
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 214 PRIIPNESGTLIQ---MKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
           PR++  E   L     ++      P P + W    + ++ES  I +   ++ +  E    
Sbjct: 9   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI-EAEAEPEGDPPT 313
              P   ++G Y    KN  G +N  +N +  +     +   PT
Sbjct: 69  FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            PR    ++P +  +     +E V+  +P P + W    + + ++  I +     G +  
Sbjct: 8   PPRVVSLEEPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EIS 63

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
              L  N PT  + GNY   A N +G +N  I  +F  
Sbjct: 64  EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
            H G  L+ S  +     Q+         L        ++G Y +IAKN  G  + T+N 
Sbjct: 40  LHNGQPLRESKIIHVEYYQEGE--ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97

Query: 89  NFSEEDGKLKVPGGKAPRFPKKP 111
           +F      LK P       P  P
Sbjct: 98  HF------LKEPFPVDEVSPTPP 114

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 90.1 bits (223), Expect = 7e-21
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 41/211 (19%)

Query: 117 GDLLVMECVLEASPMP----DIIW----------------YQGTKVIED-----TGRIKM 151
           G+   + C    SP      DI W                Y G K+ ++      GR+  
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI 211
           +   +      +   + N    D G Y+C    + G +N    L            PS  
Sbjct: 75  TSNDVKSGDASIN--VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGT 125

Query: 212 EKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
                   E G   ++KC+        + +W K        +    +             
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVI----S 179

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           + +     SGTY C V+N  G     L L++
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 86.7 bits (214), Expect = 1e-19
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 38/209 (18%)

Query: 222 GTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQDDTYEIICE------- 270
           G    + CK +  P      +++W  +    +   ++ I+ +          +       
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 271 -------------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEK 317
                        +T+    D GTY+C VK   G +N    L +          P+    
Sbjct: 75  TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGTRC 127

Query: 318 PKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK 376
               SE+ G    ++C+ K      +  W                +T         + VK
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT------SPVISVK 181

Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +   E +G Y C ++N  G     L L++
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 81.3 bits (200), Expect = 8e-18
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 19/143 (13%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           A + + N+Q SD G Y+   K   G  +    L          V      R     +  +
Sbjct: 84  ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-------LVK-PSGTRCFVDGSE-E 134

Query: 116 DGDLLVMEC-VLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
            G+   ++C   E S      W          T  +      +        + + N + +
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--------ISVKNASSE 186

Query: 174 DGGNYRCNACNSIGESNANIALN 196
             G Y C   N +G     + L+
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 32/233 (13%), Positives = 54/233 (23%), Gaps = 81/233 (34%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP----EIVWFHEGKELQQTDR--ISWN--- 361
           P   IEK K      G+   + CK    P      +I W     + Q  D+  I ++   
Sbjct: 6   PEQRIEKAK------GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59

Query: 362 -VTLKGDKYHIR--------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                      R              + V + +  D G Y+C +K   G  N    L + 
Sbjct: 60  IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119

Query: 407 MVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTI 466
                                                         V P         + 
Sbjct: 120 ----------------------------------------------VKPSGTRCFVDGSE 133

Query: 467 SKKKTVVIECKVMSMY-EPSVTWMKEKNTVKEDNKHVVHIE----QVKDVSMN 514
                  ++C+           W K  ++       +  +      VK+ S  
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE 186

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP FI+ P+  S   G+   M+ KV   P P++ W+  G+ +Q  D     V+ KG    
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---L 61

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             L  +  R  D G Y C  KN  GE    + L++ 
Sbjct: 62  HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           GA   P FI+ P  +  + G   +M  K S  P P+V W+   + V+     K+IV+E+ 
Sbjct: 1   GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60

Query: 263 DTYEIIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
                +           D+G Y C  KN  GE+   + L++ A+
Sbjct: 61  -----LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 72.7 bits (179), Expect = 6e-16
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            PRF + P      +G    M+  +   P PD+ WY   + ++     KM     G  + 
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS- 63

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
              L        D G Y C A N  GE+   + L+    E
Sbjct: 64  ---LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           Y  G  ++  D     + +       L  L  + V+ SD+G Y  +AKN+ GE + TV L
Sbjct: 40  YLNGRTVQSDDLHKMIVSEKG-----LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94

Query: 89  NFSEED 94
           +   ++
Sbjct: 95  DVLAKE 100

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           P   +VP+ ++I + +   ++ KV  +  P V+W     TV+ D+ H + + +
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE 58

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 89.3 bits (221), Expect = 1e-20
 Identities = 34/193 (17%), Positives = 53/193 (27%), Gaps = 20/193 (10%)

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKES------SKIKIIVNEQDDTYEIICE--- 270
           E  TL     + S  P  EV WFK     ++         +  I       ++I      
Sbjct: 7   ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66

Query: 271 ----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
               +T       G Y C +K    E     +L++         P T     +       
Sbjct: 67  FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDF 119

Query: 327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY 386
            ++ + C V A P P + W             +  V  + D            K      
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179

Query: 387 KCNIKNFHGELNA 399
            C  KN   E + 
Sbjct: 180 TCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 83.2 bits (205), Expect = 1e-18
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 22/194 (11%)

Query: 117 GDLLVMECV---LEASPMPDIIWY----QGTKVIEDT--------GRIKMSKKSIGKDTY 161
           G+ + +      +   P  ++ W+       +V+                    I +   
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNES 221
              L +        GNY C       E      L+            +            
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-------KPLTLSVHSERSQFPD 118

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
            +++ + C  +A P P V+W   + +    +     V ++ D    +        P    
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178

Query: 282 YRCNVKNEFGESNA 295
             C  KN+  E++ 
Sbjct: 179 VTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 75.1 bits (184), Expect = 1e-15
 Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 22/140 (15%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQ 115
           L +     S  G Y    K    E +   +L+       +  P             +   
Sbjct: 69  LVVTAANISHDGNYLCRMKLGETEVTKQEHLS-------VVKP----LTLSVHSERSQFP 117

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVI----EDTGRIKMSKKSIGKDTYLLRLEINNPT 171
           D  +L + C + A P P + W     V        G +        KD  L      +  
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE-----KDGSLSVAVDLSLP 172

Query: 172 KDDGGNYRCNACNSIGESNA 191
           K       C   N   E++ 
Sbjct: 173 KPWHLPVTCVGKNDKEEAHG 192

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 54.7 bits (131), Expect = 8e-09
 Identities = 24/201 (11%), Positives = 43/201 (21%), Gaps = 62/201 (30%)

Query: 326 GKLVVMEC---KVKAKPMPEIVWFHEGKELQQT-------------DRISWNVTLKGDKY 369
           G+ V +     +V   P  E+ WF  G   +Q                      +     
Sbjct: 6   GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK 429
              L V        G Y C +K    E+     L++                        
Sbjct: 66  TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV----------------------- 102

Query: 430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWM 489
                                      +    +         + + C V +   P V W+
Sbjct: 103 -----------------------KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139

Query: 490 KEKNTVKEDNKHVVHIEQVKD 510
             +            + + KD
Sbjct: 140 MPEGVEPAPTAANGGVMKEKD 160

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P    + +      G+       V++KP  E+ W+H G ELQ++ +I            
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI----HYTNTSGV 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           + LE+ D   +D+G Y+    N+ GE +   TL++ 
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 95  GKLKVPGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS 152
           G   +    APR   +   H    G        +++ P  ++ WY     ++++ +I  +
Sbjct: 1   GPFTLD--HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT 58

Query: 153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
                  + +L LEI +   DD G YR    N  GE++    L+  GG+
Sbjct: 59  N-----TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP    + R      G   +      +KP  EVKW+     ++ESSKI       + +  
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT----NTSGV 63

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           +  EI D    DSGTYR    N  GE++    L++  
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 2  TFPKELKSYT-LEGEPTK---QIEANFQMNM--YHKGSLLKMSDRLSSTLVQDQSRLYYL 55
               ++S+    G+ T+    +++     +  YH G  L+ S ++  T       L   
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTL--- 66

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
              I +    DSG Y+ +  N  GE S    L+
Sbjct: 67 ---EILDCHTDDSGTYRAVCTNYKGEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 2/64 (3%)

Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQV 508
            TL   P I    +   +   +       V S     V W      ++E +K   H    
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI--HYTNT 60

Query: 509 KDVS 512
             V 
Sbjct: 61  SGVL 64

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PPTF      +S + G+ V+M  +V+ +P P + W    + ++   R       + +   
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR---FAEEAEGGL 61

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            RL +    + D G Y C   N +G       L + 
Sbjct: 62  CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 78.1 bits (193), Expect = 7e-18
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           G+   P+F           G  + M  +   +P+P V W +  + V+   +      E  
Sbjct: 1   GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60

Query: 263 DTYEIIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
                +C   I      D+G Y C   NE+G       L +  E
Sbjct: 61  -----LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
             P F         ++G  ++M   ++  P P + W +  + +    R          + 
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA----EEAEG 59

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            L RL I    + D G Y C A N  G       L  +G
Sbjct: 60  GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                ++   R  +   +       L  L I   ++ D+G Y   A N+ G       L
Sbjct: 40 LRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94

Query: 89 N 89
           
Sbjct: 95 E 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 8/53 (15%), Positives = 24/53 (45%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           P  +      ++ + + V++  +V    +P V+W++ +  V+ D +      +
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 84.0 bits (208), Expect = 5e-20
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG-DKY 369
            PT        S        +   VK  P P + WF+ G  L ++  I   + +    +Y
Sbjct: 4   APTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           H  L++ +P   + G Y    KN +G+    ++ +  
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           AP     + PT         +   ++ +P P + W+    ++ ++  I           Y
Sbjct: 4   APTITFLESPTSDHH---WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
              L+++NPT  + G+Y   A N  G+    I+ +F G
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
           FAP+         +    +          P+P ++WF    ++ ES  I   ++  + T 
Sbjct: 3   FAPTITFLESPTSDHHWCI---PFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 266 EIIC-EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
              C ++ +P   ++G Y    KNE+G+    ++ +   
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
          ++ G++L  S  + + +       Y+   L + N    ++G+Y +IAKN+ G+    ++ 
Sbjct: 36 FYNGAILNESKYICTKIHVTNHTEYH-GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94

Query: 89 NFSE 92
          +F  
Sbjct: 95 HFMG 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 3/63 (4%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMN 514
           P I  +             I   V    +P++ W      + E       I        +
Sbjct: 5   PTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61

Query: 515 FEL 517
             L
Sbjct: 62  GCL 64

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 83.5 bits (207), Expect = 6e-20
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P  +   +    + G    +E      P P   W                + +      
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE----LLVDAKSST 57

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             +     ++ D+G YK  +KN  GE  A   + ++
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  +   R I  ++G    ++      P P   W   D     + ++ +       +  
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI- 60

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302
                      DSG Y+  VKNE GE  A   + ++
Sbjct: 61  ---FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            P+     +    + G    +E     +P P   W  G         + +        + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSS 56

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
              +   +  + D GNY+    N +GE  A   +  Q
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 12/77 (15%)

Query: 13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK 72
           G P                S   ++  L        +       +   + +++DSG YK
Sbjct: 27 IGAPDPTAT------WTVGDSGAALAPELLVDAKSSTT------SIFFPSAKRADSGNYK 74

Query: 73 VIAKNKNGEGSSTVNLN 89
          +  KN+ GE  +   + 
Sbjct: 75 LKVKNELGEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           P I    + + I    T  +E   +   +P+ TW    +      + +V  +
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK 54

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 83.5 bits (207), Expect = 8e-20
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
           P  + P   E+ + ++   G       +V  KP PE  W+  G +++++DRI W      
Sbjct: 1   PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                 L ++D   ED+        N  GE +++  L ++
Sbjct: 61  V---CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 77.7 bits (192), Expect = 9e-18
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP   E+ +      G+    + +   KP PE +W+K    ++ S +I     E +    
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---- 60

Query: 267 IIC--EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE 304
            +C   I D  G DS +      N  GE++++  L ++A+
Sbjct: 61  -VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 100 PGGKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           P  +AP+  ++        G        +   P P+  WY+    IE + RI        
Sbjct: 1   PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
                  L I + T +D  +    A N  GE++++  L  Q 
Sbjct: 61  VCE----LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
          Y  G  ++ SDR+       +  +     L I++V   DS    V A N  GE SS   L
Sbjct: 40 YKNGVKIERSDRI--YWYWPEDNVC---ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94

Query: 89 NFSEE 93
              +
Sbjct: 95 LVQAK 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 307 PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
           P    P  +   +  +     +     K   +P P  +W  +GK + Q  +    ++   
Sbjct: 2   PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK--LSEDK 59

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
             +   LE+      D+GLY C +KN  G ++++  L I+ +
Sbjct: 60  GGF--FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 75.0 bits (185), Expect = 9e-17
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  +   +     S ++ +   K + +PRP   W K  K + +  K K+   E    + 
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLS--EDKGGFF 63

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           +  EI      DSG Y C VKN  G  +++  L I+A
Sbjct: 64  L--EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 100 PGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           P    P        T      +          P P  IW +  K I   G+ K+S+    
Sbjct: 2   PISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE---- 57

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            D     LEI+     D G Y C   NS G  +++  L  + 
Sbjct: 58  -DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             G  +    +    L +D+        L I     SDSG Y    KN  G  SS+  L
Sbjct: 41 TKDGKAITQGGKY--KLSEDKG----GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 451 LSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           +S  PVI    +  T+S         K      P+  W K+   + +  K+ +  ++
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKY 369
            P FI KP+ +    G  V +EC++ A P P++ W    + +Q  TDRIS     + +  
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS---LYQDNTG 71

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            + L +KD  K+D G Y  +  N  G    N  L++ 
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 75.9 bits (187), Expect = 7e-17
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP FI KP+      G  ++++C+ SA P P++ W + +++V+ ++    +  +      
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
           +   I D    D+G Y  +  NE G +  N  L++ A        P   
Sbjct: 75  L--LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-------RPNQT 114

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 75.5 bits (186), Expect = 8e-17
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 103 KAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKD 159
           +AP F  KP      +GD + +EC + A P P + W +  ++++ +T RI + + + G+ 
Sbjct: 14  RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
           T    L I +  K D G Y  +A N  G +  N  L+   
Sbjct: 74  T----LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                +++ +    S    +  R      L IK+V K D+G Y V A N+ G  +    L
Sbjct: 50  KRNNEMVQFNTDRISLYQDNTGR----VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105

Query: 89  N 89
           +
Sbjct: 106 D 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 8/65 (12%), Positives = 25/65 (38%)

Query: 442 QFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKH 501
               +        P+    P+   + +  +V +EC++ ++  P + W +    V+ +   
Sbjct: 3   HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62

Query: 502 VVHIE 506
           +   +
Sbjct: 63  ISLYQ 67

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 17/136 (12%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           A+  I +VQ  DSG+Y+ +           + +       ++     + P          
Sbjct: 67  ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG--------- 117

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
               + + C     P+ ++ W   +     +      +   G       L +        
Sbjct: 118 -TGEVQLTCQARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTSVLRLKP---QPS 169

Query: 176 GNYRCNACNSIGESNA 191
            N+ C   N+  +   
Sbjct: 170 RNFSCMFWNAHMKELT 185

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKEL--QQTDRISWNVTLKGDKYHIR---LEVKDPRK 380
           G  V +EC    +   E+       +     T   S   TL  ++  +      +   + 
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76

Query: 381 EDTGLYKCNIKNFHGELNANLTLNIEM 407
            D+G Y+C +          LT+ ++ 
Sbjct: 77  RDSGQYRCLVICGAAWDYKYLTVKVKA 103

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 85.1 bits (210), Expect = 2e-19
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 32/198 (16%)

Query: 112 TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN 169
           T+   G  +++ C L  S        W +G  V+++                    E   
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK------------TEFKV 55

Query: 170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKC 229
            + D  G Y C          ANI L+           P             G    + C
Sbjct: 56  DSDDQWGEYSCVFLPEPM-GTANIQLHGP---------PRVKAVKSSEHINEGETAMLVC 105

Query: 230 KCSAKPRP-EVKWFKA----DKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYR 283
           K  + P   +  W+K     DK +   S+ +  V+      E+   I +     D G YR
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELH--IENLNMEADPGQYR 163

Query: 284 CNVKNEFGESNANLNLNI 301
           CN  +  G   A + L +
Sbjct: 164 CNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 78.9 bits (194), Expect = 3e-17
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 27/192 (14%)

Query: 220 ESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
           + G+ I + C  +         +W K   ++KE +             E   +  D    
Sbjct: 11  DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFKVDSDD---- 59

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
             G Y C    E        N+ +         PP             G+  ++ CK ++
Sbjct: 60  QWGEYSCVFLPE---PMGTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSES 109

Query: 338 KP-MPEIVWFHEGKELQQ--TDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKNF 393
            P + +  W+       +   +       +   +    L +++   + D G Y+CN  + 
Sbjct: 110 VPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169

Query: 394 HGELNANLTLNI 405
            G   A +TL +
Sbjct: 170 KGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 75.1 bits (184), Expect = 7e-16
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--IHQ 115
              K       GEY  +       G++ + L+               PR     +     
Sbjct: 51  TEFKVDSDDQWGEYSCVFLP-EPMGTANIQLHG-------------PPRVKAVKSSEHIN 96

Query: 116 DGDLLVMECVLEASP-MPDIIWYQGTKVIEDTGRIKMSKK-SIGKDTYLLRLEINNPT-K 172
           +G+  ++ C  E+ P + D  WY+ T   +         +  +        L I N   +
Sbjct: 97  EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156

Query: 173 DDGGNYRCNACNSIGESNANIALNFQ 198
            D G YRCN  +S G   A I L  +
Sbjct: 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 65/174 (37%)

Query: 326 GKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
           G  +++ C +           W   G  L++                   E K    +  
Sbjct: 13  GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-----------TEFKVDSDDQW 61

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQF 443
           G Y C    F  E      + +                                      
Sbjct: 62  GEYSCV---FLPEPMGTANIQLH------------------------------------- 81

Query: 444 KKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTV 495
                      P ++ V     I++ +T ++ CK  S   P     W K  ++ 
Sbjct: 82  ---------GPPRVKAVKSSEHINEGETAMLVCKSES-VPPVTDWAWYKITDSE 125

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 87.2 bits (215), Expect = 4e-19
 Identities = 42/332 (12%), Positives = 94/332 (28%), Gaps = 75/332 (22%)

Query: 104 APRF---PKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQ----GTKVIEDTGRIKMSKKS 155
           A        K      GD   +   +    P+P  + Y           +T         
Sbjct: 2   AFTVSIQSNKRCFLA-GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53

Query: 156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
                    L + + T ++ G+Y+    ++   ++    +               I +P+
Sbjct: 54  ---------LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE----AELIVNITEPQ 100

Query: 216 IIPNESGTLIQMKCKC---SAKPRPEV-----KWFKADKLVKESSKIKIIVNEQDDTYEI 267
                S T +++         K   +       W K + ++  +  I             
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDI------------- 147

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ--G 325
              I +     +G Y   V  E  +S A+ +  I             +++  + S+    
Sbjct: 148 --TIQEFTADKNGVYTVKVWGESEDSAASASTKIML-------ATMNVDQDVVESKTVAL 198

Query: 326 GKLVVMECKV------KAKPMPEIV----WFHEGKELQQTDRISWNVTLKGDKYHI---- 371
           G  + +   V       +  MP +     W+ + +       I   V    + + I    
Sbjct: 199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG 258

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
            L  +    +DT  + C  K +    +  + +
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 83.3 bits (205), Expect = 8e-18
 Identities = 34/270 (12%), Positives = 73/270 (27%), Gaps = 57/270 (21%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPT--I 113
           A LT+ +    ++G YKV  ++ +   S    +          +   +      +P    
Sbjct: 52  ATLTVADATSENAGSYKVTVQDTDTMTSVESEV--------FLMEEAELIVNITEPQHFY 103

Query: 114 HQDGDLLVMECVLEAS---PMPDII-----WYQGTKVIEDTGRIKMSKKSIGKDTYLLRL 165
                 + +   ++ S      D       W +G  VI+ T                  +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ----------------DI 147

Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR-----IIPNE 220
            I   T D  G Y         +S A+ +            A   +++       +    
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIM-------LATMNVDQDVVESKTVALGN 200

Query: 221 SGTL---IQMKCKCSAKPRPEV----KWFKADKLVKESSKIKIIVNEQDDTYEII----C 269
             +L   +       +   P +     W+   +     + I   V E  + + I      
Sbjct: 201 EISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHL 260

Query: 270 EITDPIGPDSGTYRCNVKNEFGESNANLNL 299
                   D+  + C  K      +  + +
Sbjct: 261 FKESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 41/209 (19%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSA-KPRPE---VKWFKADKLVKESSKIKIIVNEQD 262
           A +   +       +G    +    +  +P P      W K D+  + ++    + +   
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATS 61

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
           +              ++G+Y+  V++    ++    + +  EAE        I +P+   
Sbjct: 62  E--------------NAGSYKVTVQDTDTMTSVESEVFLMEEAEL----IVNITEPQHFY 103

Query: 323 EQGGKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDKY---HIRLEVK 376
                 V +   VK    K   +    H           SW    KG+        + ++
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELH----------YSW---SKGEDVIDTTQDITIQ 150

Query: 377 DPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +   +  G+Y   +     +  A+ +  I
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASASTKI 179

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 85.7 bits (211), Expect = 5e-19
 Identities = 32/237 (13%), Positives = 65/237 (27%), Gaps = 53/237 (22%)

Query: 222 GTLIQMKCKC---SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP- 277
           G  +++ C     +    P + W K     + +   K   N Q +    +   +      
Sbjct: 17  GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 76

Query: 278 ------------------------DSGTYRCNVKN-----EFGESNANLNLNIEAEAEPE 308
                                   D G Y C V       EFG    ++ L +       
Sbjct: 77  DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS- 135

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
                 +   ++     G  + M C         + W+      +  +  ++      ++
Sbjct: 136 --NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193

Query: 369 YHIR-----------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
           + I                  L ++  +  D G   C +    GEL+A+ +  I  V
Sbjct: 194 FGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 82.7 bits (203), Expect = 6e-18
 Identities = 36/243 (14%), Positives = 64/243 (26%), Gaps = 52/243 (21%)

Query: 108 PKKPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT---- 160
                    G  + + C  + +     P I W +G      T   K +    G+      
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 161 ----------YLLR----------LEINNPTKDDGGNYRCNACNS-----IGESNANIAL 195
                     +L R          L + +    DGG Y C           G    ++ L
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127

Query: 196 NFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK 255
              G           +    ++  + G  I M C C+      V W+      +      
Sbjct: 128 KVTGH---TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184

Query: 256 IIVNEQDDTYEIICEITDPIGP-----------------DSGTYRCNVKNEFGESNANLN 298
                  + + I    ++  G                  D+G   C +    GE +A+ +
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244

Query: 299 LNI 301
             I
Sbjct: 245 STI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 74.6 bits (182), Expect = 3e-15
 Identities = 26/162 (16%), Positives = 43/162 (26%), Gaps = 26/162 (16%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPR-----FPKK 110
             L + +V   D G Y       +             +   LKV G            + 
Sbjct: 90  PTLRLTHVHPQDGGRYWCQVAQWSIRT----EFGLDAKSVVLKVTGHTPSNNVHVSTAEV 145

Query: 111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGR----IKMSKKSIGKDTYLLR-- 164
             + + G+ + M C        ++ WY G    E+          +K   G   +     
Sbjct: 146 VQVDE-GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204

Query: 165 ----------LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                     L I      D G   C      GE +A+ +  
Sbjct: 205 GRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 23/192 (11%)

Query: 326 GKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
           G  V + C  +       P I W       + T     N   +G+   +     D  KE 
Sbjct: 17  GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG--LGFVESDSYKES 74

Query: 383 TGLYKCNIKNFHGELNANLTLNIEMVRFI---KYRVR-SNKGIVGKMGLVKTRSYHRDFS 438
            G +            A  TL +  V      +Y  + +   I  + GL       +   
Sbjct: 75  FGDFLGRA---SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 131

Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
             P              V     +VV + +   + + C        +VTW       +  
Sbjct: 132 HTPSN-----------NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180

Query: 499 NKHVVHIEQVKD 510
                     K+
Sbjct: 181 ETGTYQPLANKN 192

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 8/70 (11%), Positives = 20/70 (28%)

Query: 20  IEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN 79
            E           +  +      S+ +  ++       L I+  + +D+G          
Sbjct: 177 FENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236

Query: 80  GEGSSTVNLN 89
           GE  +  +  
Sbjct: 237 GELDADRSST 246

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+  AP F  K +      G  +   C+ +  P+P++ WFK  K +   S    I  
Sbjct: 1   GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR 60

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
           + D T  +    T     D G Y     N  G  +    L ++A    
Sbjct: 61  DLDGTCSL--HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 78.6 bits (194), Expect = 6e-18
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL 364
           +      P F  K K      G  V   C+V   P P+I WF +GK++       + +  
Sbjct: 2   SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQR 60

Query: 365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             D     L       +D G Y     N  G ++    L ++
Sbjct: 61  DLDGTC-SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGK 158
             AP F  K   +   +G  +   C +  +P P I W+  G ++   +    + +   G 
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG- 64

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENG 203
                 L     T DD GNY   A N  G  +    L  Q   +G
Sbjct: 65  ---TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 2  TFPKELKSYT-LEGEPTK---QIEANFQMNM--YHKGSLLKMSDRLSSTLVQDQSRLYYL 55
           F  +LK Y   EG P     ++  N +  +  +  G  +       +            
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT---- 65

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
            L        D G Y ++A N  G  S T  L 
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
           P      K   I +   V   C+V    +P + W K+   +   + H  
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT 57

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 82.2 bits (203), Expect = 2e-18
 Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 29/186 (15%)

Query: 119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR----LEINNPTKDD 174
            L +     +  + DI W + +   +     K  +    KDTY L     L+I +   DD
Sbjct: 18  NLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDD 77

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
              Y+ +  ++ G++      + +            + KP+I  + +     + C+    
Sbjct: 78  QDIYKVSIYDTKGKNVLEKIFDLKI------QER--VSKPKI--SWTCINTTLTCEVMNG 127

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
             PE+  ++  K +K S ++                        S  ++C   N+  + +
Sbjct: 128 TDPELNLYQDGKHLKLSQRVITHKWTTS---------------LSAKFKCTAGNKVSKES 172

Query: 295 ANLNLN 300
           +   ++
Sbjct: 173 SVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 31/188 (16%)

Query: 9   SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
                 +    I+     +   K  + +      +   +D  +L+    L IK+++  D 
Sbjct: 22  PSFQMSDDIDDIKWEKTSD---KKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78

Query: 69  GEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA 128
             YKV   +  G+       +      K++           KP I        + C +  
Sbjct: 79  DIYKVSIYDTKGKNVLEKIFDL-----KIQER-------VSKPKISWTCINTTLTCEVMN 126

Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE 188
              P++  YQ  K ++ + R+                  +  T      ++C A N + +
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVI----------------THKWTTSLSAKFKCTAGNKVSK 170

Query: 189 SNANIALN 196
            ++   ++
Sbjct: 171 ESSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 73.8 bits (181), Expect = 2e-15
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 32/187 (17%)

Query: 225 IQMKCKCSAK--PRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIIC----EITDPIGP 277
           I +            ++KW K  DK      + +    ++ DTY++      +I      
Sbjct: 17  INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
           D   Y+ ++ +  G++      +++ +            KPKI          + C+V  
Sbjct: 77  DQDIYKVSIYDTKGKNVLEKIFDLKIQERVS--------KPKISWT--CINTTLTCEVMN 126

Query: 338 KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL 397
              PE+  + +GK L+ + R+                        +  +KC   N   + 
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVI---------------THKWTTSLSAKFKCTAGNKVSKE 171

Query: 398 NANLTLN 404
           ++   ++
Sbjct: 172 SSVEPVS 178

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 54/183 (29%)

Query: 333 CKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIR----LEVKDPRKEDTGLYK 387
               +  + +I W     + +    R       + D Y +     L++K  + +D  +YK
Sbjct: 23  SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYK 82

Query: 388 CNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYS 447
            +I +  G+       +++                                         
Sbjct: 83  VSIYDTKGKNVLEKIFDLK----------------------------------------- 101

Query: 448 VLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
                   +   V K           + C+VM+  +P +   ++   +K   + + H   
Sbjct: 102 --------IQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWT 153

Query: 508 VKD 510
              
Sbjct: 154 TSL 156

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 78.3 bits (193), Expect = 6e-18
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 311 PPTFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
            P +    K+            V   C     PMP + W   GKE +Q  RI      K 
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKV 60

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
              H  L ++     D G Y C ++N +G +N    L++
Sbjct: 61  RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 103 KAPRFPKKPTIH------QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
           +AP +     +          + +   C    +PMP + W +  K  +   RI   K   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              +    L + +    D GNY C   N  G  N    L+
Sbjct: 63  QHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 207 APSFIEKPRIIPNE----SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           AP +    ++        +   ++ +C     P P ++W K  K  K+  +I        
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
               I+  +      D G Y C V+NE+G  N   +L++
Sbjct: 64  HWSLIMESVVP---SDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             G   K   R+    V++Q        L +++V  SD G Y  + +N+ G  + T +L
Sbjct: 43 LKNGKEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97

Query: 89 N 89
          +
Sbjct: 98 D 98

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 80.4 bits (198), Expect = 8e-18
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 31/186 (16%)

Query: 119 LLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR----LEINNPTKDD 174
            L +        + ++ W +G+ ++ +  R    K  +    + +     L+I N T+DD
Sbjct: 15  NLNIPNFQMTDDIDEVRWERGSTLVAEFKR--KMKPFLKSGAFEILANGDLKIKNLTRDD 72

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK 234
            G Y     ++ G    N AL+ +  E         + KP I      +   + C+    
Sbjct: 73  SGTYNVTVYSTNGTRILNKALDLRILE--------MVSKPMIYWE--CSNATLTCEVLEG 122

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
              E+K ++  + ++   +  +     +                   ++C   N   + +
Sbjct: 123 TDVELKLYQGKEHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQES 167

Query: 295 ANLNLN 300
               +N
Sbjct: 168 EMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 28/139 (20%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L IKN+ + DSG Y V   + NG       L+             +      KP I+ + 
Sbjct: 63  LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL------------RILEMVSKPMIYWEC 110

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
               + C +      ++  YQG + +    +  MS +                  +    
Sbjct: 111 SNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW----------------TNLRAP 154

Query: 178 YRCNACNSIGESNANIALN 196
           ++C A N + + +    +N
Sbjct: 155 FKCKAVNRVSQESEMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 35/192 (18%)

Query: 219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC----EITDP 274
                L  +          EV+W +   LV E  + K+    +   +EI+     +I + 
Sbjct: 11  GHGINL-NIPNFQMTDDIDEVRWERGSTLVAEFKR-KMKPFLKSGAFEILANGDLKIKNL 68

Query: 275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
              DSGTY   V +  G    N  L++             + KP I  E       + C+
Sbjct: 69  TRDDSGTYNVTVYSTNGTRILNKALDLRILEM--------VSKPMIYWE--CSNATLTCE 118

Query: 335 VKAKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN 392
           V      E+  +   + L+   +  +S+  T                      +KC   N
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------------NLRAPFKCKAVN 161

Query: 393 FHGELNANLTLN 404
              + +    +N
Sbjct: 162 RVSQESEMEVVN 173

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 19/179 (10%), Positives = 50/179 (27%), Gaps = 54/179 (30%)

Query: 336 KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDPRKEDTGLYKCNIK 391
               + E+ W      + +  R      LK   + I     L++K+  ++D+G Y   + 
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKM-KPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVY 81

Query: 392 NFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTL 451
           + +G    N  L++ +                                            
Sbjct: 82  STNGTRILNKALDLRI-------------------------------------------- 97

Query: 452 SVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKD 510
                +  V K +   +     + C+V+   +  +   + K  ++   +  +  +    
Sbjct: 98  -----LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL 151

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 78.1 bits (192), Expect = 9e-18
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKL-VKESSKIKIIVNEQD 262
              F+ +P+      G  I    + +       P VKWFK   + +       + +++  
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 263 DTYEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           D    +      ITD     +G+YRC V  +     +N NL +
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLK-- 365
              F+ +P+      G  +    +V    +   P + WF  GK +  + ++  ++ L   
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDS 62

Query: 366 ----GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                  Y   L + D +   TG Y+C +        +N  L +
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKMSKK- 154
              F  +P       G  +     +  + +   P + W++G  V    +    +++    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                 YL  L I +      G+YRC          +N  L 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 36  KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
           K+   L      D++   YL  L I + Q + +G Y+     K+    S  NL   E
Sbjct: 52  KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 78.9 bits (194), Expect = 9e-18
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 305 AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN--- 361
                    F++ P  +    G  V + C+    P+PEI W+ EG+         W+   
Sbjct: 15  VPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74

Query: 362 --VTLKGDKYHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
                    YH      + +    +EDTG Y+C   N     +      ++ VR
Sbjct: 75  LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI-----KIIV 258
                 F++ P       G  +++ C+    P PE++W+   +   +         ++  
Sbjct: 18  GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77

Query: 259 NEQDDTYEIIC----EITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
                TY         I   +  D+GTY C   N+   ++      +
Sbjct: 78  VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 99  VPGGKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSI 156
             G     F + P   Q   G  + + C    SP+P+I W+   +   D          +
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 157 GKDTYLLR--------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            +              + I+   ++D G Y C A N    ++   A   + 
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 35  LKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           L    RL    +      +  + ++I  + + D+G Y+  A N       T   
Sbjct: 69  LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P+F    K  +   G+  V++C V+  P+P I W   G+ +Q             +   
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-------EAGV 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             L ++D   ED G Y C  +N  G+++ +  + +
Sbjct: 64  AELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           AP F          +G   V++C +  +P+P I W    + I+              +  
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC--------EAG 62

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
           +  L I +   +D G Y C A N++G+ + +  +   
Sbjct: 63  VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           APSF    +      G    ++C     P P + W    + ++ +         +    E
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-----CEAGVAE 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           +   I D +  D GTY C  +N  G+ + +  + +
Sbjct: 66  L--HIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          A L I++    D G Y  +A+N  G+ S +  + 
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 449 LTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVK------EDNKHV 502
             + V P    V K   + + +  V++C V     P +TW+     ++      E     
Sbjct: 6   SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65

Query: 503 VHIEQV 508
           +HI+  
Sbjct: 66  LHIQDA 71

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 79.9 bits (197), Expect = 3e-17
 Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
            TY                             P       + + +G + V + C+V A P
Sbjct: 1   ATYAAASSALVP-------------RGSHMYAPKLQGPVAVYTWEGNQ-VNITCEVFAYP 46

Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
              I WF +G+ L  ++    N+ +        LEV    + D G Y C   N  G+ + 
Sbjct: 47  SATISWFRDGQLLPSSNYS--NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESL 104

Query: 400 NLTLNI 405
              L  
Sbjct: 105 EFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 69.9 bits (171), Expect = 7e-14
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
             Y   +   +                   +AP  ++ P  +    G  + + C+  A P
Sbjct: 1   ATYAAASSALVPR-------------GSHMYAP-KLQGPVAVYTWEGNQVNITCEVFAYP 46

Query: 236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA 295
              + WF+  +L+  S+   I +        +  E+T     D G Y C   N  G+ + 
Sbjct: 47  SATISWFRDGQLLPSSNYSNIKIYNTPSASYL--EVTPDSENDFGNYNCTAVNRIGQESL 104

Query: 296 NLNLNIEAEAEPEGDPPTFI 315
              L     A+    P    
Sbjct: 105 EFILVQ---ADTPSSPSIDQ 121

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 104 APRFPKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
           AP+      ++  +G+ + + C + A P   I W++  +++  +    +   +    +  
Sbjct: 19  APKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS-- 76

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
             LE+   +++D GNY C A N IG+ +    L
Sbjct: 77  -YLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +  G LL  S+  +  +    S     + L +    ++D G Y   A N+ G+ S    L
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSA----SYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108

Query: 89  NFSEEDGKLKVPGGKAPRFPKKPTIH-----------QDGDLLVMECVLEASPMPDIIWY 137
             ++       P   +P   +                  G + +++   E   + + +W+
Sbjct: 109 VQAD------TPS--SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH 160

Query: 138 QGTKVIEDTGR 148
                 ++   
Sbjct: 161 SKWYDAKEASM 171

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSM 513
           P ++  P  V   +   V I C+V +    +++W ++   +   N   + I      S 
Sbjct: 20  PKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASY 77

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 308 EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
           E   PT     + ++   G+ + + C     P P+I+WF + + L +   I     LK  
Sbjct: 7   ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI----VLKDG 62

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                L ++  RKED GLY C   +  G         IE
Sbjct: 63  NR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 96  KLKVPGGKAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSK 153
           +L V    AP             G+ + + C    +P P I+W++  + + +   I +  
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61

Query: 154 KSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
            +         L I    K+D G Y C AC+ +G +        +G +
Sbjct: 62  GN-------RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP+            G  I++ C  S  P P++ WFK ++ + E S I +    +D    
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL----KDGNRN 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
           +   I      D G Y C   +  G +       IE   E  
Sbjct: 66  LT--IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 8/61 (13%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
          +     L     +   L      L      TI+ V+K D G Y   A +  G        
Sbjct: 45 FKDNETLVEDSGI--VLKDGNRNL------TIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96

Query: 89 N 89
           
Sbjct: 97 I 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 445 KYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV 503
           +   +   V P I    +  T S  +++ + C       P + W K+  T+ ED+  V+
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 75.1 bits (185), Expect = 7e-17
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           G   +   + +      G L+ + C+++      I W  +G +L +++R      + G+ 
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTR----ITGE- 54

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
               +EV+D    D+GLY C   +  G      ++N+ 
Sbjct: 55  ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
           G +     +        GDLL + C L       I W +    + ++ R +++ +     
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE---- 55

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                +E+ +    D G Y C   +  G      ++N
Sbjct: 56  -----VEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
           G + S   +        G L+Q++C+        + W +    + ES++ +I       T
Sbjct: 1   GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-------T 52

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
            E + E+ D +  DSG Y C   +  G      ++N+  +A P G P +
Sbjct: 53  GEEV-EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS-DALPSG-PSS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 6/33 (18%), Positives = 18/33 (54%)

Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           + +++   +DSG Y  +  + +G  ++  ++N
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE--QVKDVS 512
                  +   +     + + C++      S+ W+++   + E N+  +  E  +V+D  
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGEEVEVQDSV 62

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 18/192 (9%)

Query: 107 FPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
            P+   + Q GD + + C       P   W         T         +  +     L 
Sbjct: 6   TPESRYLAQIGDSVSLTCSTTGCESPFFSWR--------TQIDSPLNGKVTNEGTTSTLT 57

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
           +N  +  +  +Y C A     +    I +            P   E     P E+G  I 
Sbjct: 58  MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYS-------FPKDPEIHLSGPLEAGKPIT 110

Query: 227 MKCKCSA---KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR 283
           +KC  +      R E+   K D L+K    ++    +  +T  +    T  I        
Sbjct: 111 VKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV 170

Query: 284 CNVKNEFGESNA 295
           C  K    E ++
Sbjct: 171 CRAKLHIDEMDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 67.5 bits (164), Expect = 4e-13
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
           + G  + + C  +    P   W        +S     + NE   +   +  ++     + 
Sbjct: 14  QIGDSVSLTCSTTGCESPFFSWRTQI----DSPLNGKVTNEGTTSTLTMNPVSFG---NE 66

Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-- 337
            +Y C    E  +    + + I +        P   E       + GK + ++C V    
Sbjct: 67  HSYLCTATCESRKLEKGIQVEIYS-------FPKDPEIHLSGPLEAGKPITVKCSVADVY 119

Query: 338 -KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
                EI        ++  + +        +   + +      ++   +  C  K    E
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179

Query: 397 LNA 399
           +++
Sbjct: 180 MDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 61.7 bits (149), Expect = 3e-11
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
            LT+  V   +   Y   A  ++ +    + +          +               + 
Sbjct: 55  TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE---------IYSFPKDPEIHLSGPLEA 105

Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
           G  + ++C V +  P     I   +G  +++    ++ + +    +T  L +      +D
Sbjct: 106 GKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL-ETKSLEVTFTPVIED 164

Query: 174 DGGNYRCNACNSIGESNA 191
            G    C A   I E ++
Sbjct: 165 IGKVLVCRAKLHIDEMDS 182

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 7/101 (6%)

Query: 324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDT 383
           Q G  V + C       P   W  +            N  +  +     L +      + 
Sbjct: 14  QIGDSVSLTCSTTGCESPFFSWRTQ-------IDSPLNGKVTNEGTTSTLTMNPVSFGNE 66

Query: 384 GLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK 424
             Y C       +L   + + I           S     GK
Sbjct: 67  HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGK 107

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362
           +    +G     IE  +    Q G      C++       + WF +   L   +     +
Sbjct: 5   SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE--I 62

Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
             +   YH  L ++    +D+G       +      A L +  +   F +
Sbjct: 63  DAQPGGYH-VLTLRQLALKDSGTIYFEAGDQRAS--AALRVTEKPSVFSR 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
               IE    +  + G+    +C+ S      V WF     +  +   +I          
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318
            + ++      DSGT         G+  A+  L +  +      P  F    
Sbjct: 73  TLRQLAL---KDSGTIYFEA----GDQRASAALRVTEK------PSVFSRSG 111

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 6/83 (7%)

Query: 102 GKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
           G+     +       Q+G      C +  +    + W+     +      ++  +  G  
Sbjct: 11  GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY- 69

Query: 160 TYLLRLEINNPTKDDGGNYRCNA 182
                L +      D G     A
Sbjct: 70  ---HVLTLRQLALKDSGTIYFEA 89

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 19/52 (36%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
             I E  + V + +  +    C++       V W  +K  +  +  + +  +
Sbjct: 14  VHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ 65

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
           +   + L  ++       Q         VLT++ +   DSG     A ++    +  V
Sbjct: 48  FLDKTPLHANELNE-IDAQPGGY----HVLTLRQLALKDSGTIYFEAGDQRASAALRV 100

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE---QGGKLVVMECKVKAKPMPEIVWFH 347
           G S ++  L          +PP       +R     + G+ + +    + KP P++VW  
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
            G  L  T R+    +     +     V+   + D+G Y+ +++  + +  A + + +
Sbjct: 61  GGAPLD-TSRVHVRTS----DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 199 GGENGAG------FAPSFIEKPRIIPNES---------GTLIQMKCKCSAKPRPEVKWFK 243
           G    +G            E P+I              G  + +      KPRP+V W K
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
               + ++S++ +  ++ D  + +          DSG Y  +V+ E  +  A + + +
Sbjct: 61  GGAPL-DTSRVHVRTSDFDTVFFV----RQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 63.9 bits (156), Expect = 9e-13
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 75  AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDI 134
           +   +G  +  V +    E  K+++P     R  ++  I + G+ L +    +  P P +
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLP-----RHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56

Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
           +W +G   + DT R+ +   +   DT      +    + D G Y  +      +  A I 
Sbjct: 57  VWTKGGAPL-DTSRVHVR--TSDFDT---VFFVRQAARSDSGEYELSVQIENMKDTATIR 110

Query: 195 LN 196
           + 
Sbjct: 111 IR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
            V  ++   +SDSGEY++  + +N + ++T+ + 
Sbjct: 79  TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
              +      + G  V   CK++      ++ W+   ++L+ +++    +T +       
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE--ITYEDGVA--I 59

Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
           L VKD  K D G Y+C + N +GE ++   L ++ VR
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 220 ESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD 278
           E G  ++  CK     +  +V W+   + ++ S K +I    +D    +   + D    D
Sbjct: 14  EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT--YEDGVAIL--YVKDITKLD 69

Query: 279 SGTYRCNVKNEFGESNANLNLNIEAEAE 306
            GTYRC V N++GE ++   L ++   E
Sbjct: 70  DGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
                 +      ++G  +   C +E       + WY G + +E++ + +++      + 
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----ED 55

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            +  L + + TK D G YRC   N  GE ++   L  +G
Sbjct: 56  GVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 3  FPKELKSYT-LEGEPTK---QIEAN---FQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL 55
             ++      EG   K   +IE      Q+  Y     L+ S++   T          +
Sbjct: 4  VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG------V 57

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          A+L +K++ K D G Y+    N  GE SS   L 
Sbjct: 58 AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 73.1 bits (179), Expect = 7e-16
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS---WNVTLKGD 367
            P  +   ++ +        +   V  +P P + W   G  L +T  I            
Sbjct: 3   MPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             H  L +  P   + G Y     N  G+ +A++    
Sbjct: 60  VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 214 PRIIPNESGTLIQMKCKC---SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC- 269
           P  +   +   +   C       +P P ++W     ++ E+S I     E      +   
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 270 --EITDPIGPDSGTYRCNVKNEFGESNANLNLNI-EAEAEPEGDPPTFIEKPKIRS 322
              +  P   ++G Y     N FG+++A++     +   E   + P          
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 122 MECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR--LEINNPTKDDGGNYR 179
           +   ++  P P + W     V+ +T  I         +  +    L +N PT  + GNY 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 180 CNACNSIGESNANIALNFQG 199
             A N  G+++A+I   F  
Sbjct: 80  LLAANPFGQASASIMAAFMD 99

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYL-AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
              GS+L  +  + +  ++  +        L +      ++G Y ++A N  G+ S+++ 
Sbjct: 35  LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 94

Query: 88  LNFSEEDGKLKVPG 101
             F +   +     
Sbjct: 95  AAFMDNPFEFNPED 108

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 74.6 bits (183), Expect = 9e-16
 Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 41/207 (19%)

Query: 109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--------GRIKMSKKSIGKDT 160
           KK  + + GD + + C           W    ++            G  K++ ++  + +
Sbjct: 2   KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61

Query: 161 YLLR----LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI 216
              +    L I N   +D   Y C   +   E    +            F  +      +
Sbjct: 62  LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------FGLTANSDTHL 109

Query: 217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG 276
           +  +S TL     +      P V+         +  K   +   +               
Sbjct: 110 LQGQSLTL---TLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQ------------- 153

Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEA 303
            DSGT+ C V     +    +++ + A
Sbjct: 154 -DSGTWTCTVLQNQKKVEFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 72.7 bits (178), Expect = 4e-15
 Identities = 23/197 (11%), Positives = 53/197 (26%), Gaps = 42/197 (21%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN-------------EQDDTYEII 268
           G  +++ C  S K   +  W  ++++    ++   +                  D     
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
             I +    DS TY C V+++  E                               QG   
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLL--------------VFGLTANSDTHLLQGQS- 114

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
           + +  +      P +       +  Q  +               L V     +D+G + C
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGKT--------------LSVSQLELQDSGTWTC 160

Query: 389 NIKNFHGELNANLTLNI 405
            +     ++   + + +
Sbjct: 161 TVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 40/155 (25%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH- 114
             L IKN++  DS  Y    +++  E    V                           H 
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV------------------FGLTANSDTHL 109

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
             G  L +         P +            G+                L ++     D
Sbjct: 110 LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT---------------LSVSQLELQD 154

Query: 175 GGNYRCNACNSIGESNANIALNFQGGENGAGFAPS 209
            G + C    +  +    I +          F  +
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVL------AFQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 20/197 (10%), Positives = 51/197 (25%), Gaps = 68/197 (34%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG-------------DKYHIR 372
           G  V + C    K   +  W +  +     ++ S+                   D+ +  
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRS 432
           L +K+ + ED+  Y C +++   E                                    
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEE------------------------------------ 93

Query: 433 YHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEK 492
                          +L   +            + + +++ +  +      PSV     +
Sbjct: 94  -------------VQLLVFGLT-----ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR 135

Query: 493 NTVKEDNKHVVHIEQVK 509
               +  K  + + Q++
Sbjct: 136 GKNIQGGK-TLSVSQLE 151

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 74.5 bits (182), Expect = 2e-15
 Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 37/210 (17%)

Query: 103 KAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
                  K   +Q+   +++ C    +   +I W++  K+I      K            
Sbjct: 4   IKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----------- 49

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGE--------------SNANIALNFQGGENGAGFAP 208
            +  + +  KD  G Y+C    +  +                     +    ++      
Sbjct: 50  -KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGS 108

Query: 209 SFIEKPRIIPNESGTLI----QMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
              E+   I      +      +   C   P  E+ W   DK +      K I     D 
Sbjct: 109 DGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNI---GSDE 165

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESN 294
             +  +    +   SG Y C  +    E  
Sbjct: 166 DHLSLKEFSELE-QSGYYVCYPRGSKPEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 65.3 bits (158), Expect = 2e-12
 Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 37/182 (20%)

Query: 235 PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN 294
               + WFK  K++   ++ K   N   +  +             G Y+C       +  
Sbjct: 28  EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-----------PRGMYQCKGSQNKSKPL 76

Query: 295 ANLNLNIEAE--------------------AEPEGDPPTFIEKPKIRSEQGGKLVVMECK 334
                   A+                         +    I +   +    G  V++ C 
Sbjct: 77  QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP 136

Query: 335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
               P  EI+W H  K +   +         G         +    E +G Y C  +   
Sbjct: 137 QY--PGSEILWQHNDKNIGGDEDDK----NIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190

Query: 395 GE 396
            E
Sbjct: 191 PE 192

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 35/183 (19%)

Query: 319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP 378
           K+   Q    V++ C         I WF +GK +                   +  +   
Sbjct: 11  KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDK-----------KKWNLGSN 56

Query: 379 RKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS 438
            K+  G+Y+C       +                         +G     K  +  +D +
Sbjct: 57  AKDPRGMYQCKGSQNKSK------------------PLQVYYRMGSADDAKKDAAKKDDA 98

Query: 439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED 498
                KK        +  I + P  V+IS   TV++ C         + W      +  D
Sbjct: 99  KKDDAKKDGSDGNEEMGGITQTPYKVSISGT-TVILTCPQYP--GSEILWQHNDKNIGGD 155

Query: 499 NKH 501
              
Sbjct: 156 EDD 158

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 55.3 bits (132), Expect = 5e-09
 Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 25/151 (16%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSST-VNLNFSEEDGKLKVPGGKAPRF--------- 107
             + +  K   G Y+        +       +  +++  K       A +          
Sbjct: 51  WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDG 110

Query: 108 --------PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
                        +   G  +++ C     P  +I+W    K I      K     IG D
Sbjct: 111 NEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN----IGSD 164

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESN 190
              L L       +  G Y C    S  E  
Sbjct: 165 EDHLSL-KEFSELEQSGYYVCYPRGSKPEDA 194

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFK---ADKLVKESSKIKI--IVN 259
             F++KP  +  E+G    +  K + K    +P +KWFK    +   K  ++       N
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
              + Y +   I   +  D G YR  VK +    +   N+++EA
Sbjct: 73  SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.4 bits (156), Expect = 7e-13
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRI 358
              +  E     F++KP   S + GK  V+  KV  K +   P I WF +GK L+   + 
Sbjct: 3   SGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWF-KGKWLELGSKS 61

Query: 359 SWNVTLK------GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVR 409
               + K       + Y + L +      D G Y+  +K      +    +++E  R
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 9/103 (8%)

Query: 103 KAPRFPKKPTIHQ--DGDLLVMECVLEASPM---PDIIWYQGTKV---IEDTGRIKMSKK 154
               F KKP       G   V+   +    +   P I W++G  +    +   R    + 
Sbjct: 11  PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70

Query: 155 -SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
            +   + Y + L I      D G YR          +    ++
Sbjct: 71  HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 36  KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           K   R S     + +   Y   L I  V   D G Y++  K K+   S   N++
Sbjct: 60  KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
               ++     + +  +  V +C+V +       W+  G E++ + RI+  ++  G  + 
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRIT--ISHVGRFH- 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
            +L + D R ED G Y      +      +  LN   ++   
Sbjct: 64  -KLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+      ++    +  ++      KC+ S   +   KW+K    V+ S +I I   
Sbjct: 1   GSSGSSGQLEVLQDIADLTVKAAEQAVFKCEVS-DEKVTGKWYKNGVEVRPSKRITIS-- 57

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
                ++++  I D    D G Y           +A LN
Sbjct: 58  HVGRFHKLV--IDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 104 APRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
                +     T+    +  V +C + +       WY+    +  + RI +S        
Sbjct: 8   QLEVLQDIADLTVKA-AEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISH-----VG 60

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNA 191
              +L I++   +D G+Y           +A
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDGYALSLSA 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
          Y  G  ++ S R+  T+            L I +V+  D G+Y  +        S+ +N
Sbjct: 42 YKNGVEVRPSKRI--TISHVGRF----HKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 73.3 bits (179), Expect = 5e-15
 Identities = 23/209 (11%), Positives = 56/209 (26%), Gaps = 16/209 (7%)

Query: 206 FAPSFIEKPRI--IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           F  S  ++  +  I       + + C  S      V         +       I    D 
Sbjct: 6   FIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS--WDS 62

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE 323
                  I   +   +G   C  K       + + + +             +        
Sbjct: 63  KKGFT--IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRI---YDVVLSPSHGIEL 117

Query: 324 QGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKD 377
             G+ +V+ C  + +     +  W +   + Q    ++ ++  +      +    L +  
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             + D GLY C   +       +  + + 
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 10/144 (6%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
            TI +   S +G     AK  +    S + +          V        P        G
Sbjct: 66  FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV-----LSPSHGIELSVG 120

Query: 118 DLLVMECVLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR---LEINNPTK 172
           + LV+ C             W   +   +    +    K+            L I+  T+
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 173 DDGGNYRCNACNSIGESNANIALN 196
            D G Y C A + +     +  + 
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 11  TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL--AVLTIKNVQKSDS 68
           T   E    I+     N  +  S  +    ++  L            + LTI  V +SD 
Sbjct: 128 TARTELNVGID----FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 183

Query: 69  GEYKVIAKNKNGEGSSTVNLN 89
           G Y   A +      ++  + 
Sbjct: 184 GLYTCAASSGLMTKKNSTFVR 204

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P   I+  + +    G+ V + C++     P + W  + K ++++ +    V  +G    
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYD--VVCEGTMA- 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             L ++    +D G Y C ++       A+L 
Sbjct: 64  -MLVIRGASLKDAGEYTCEVEASKST--ASLH 92

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+    + I+         G  ++++C+ S    P V W K  K +++S K  ++  
Sbjct: 1   GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVV-- 57

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
            +     ++  I      D+G Y C V+     +    +L++E +A  
Sbjct: 58  CEGTMAMLV--IRGASLKDAGEYTCEVEASKSTA----SLHVEEKASG 99

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 105 PRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
               K         G+ + + C L  +  P + W +  K I  + +  +       +  +
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTM 62

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANI 193
             L I   +  D G Y C    S   ++ ++
Sbjct: 63  AMLVIRGASLKDAGEYTCEVEASKSTASLHV 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
                ++ S +    +V + +     A+L I+     D+GEY    +      S  V 
Sbjct: 42 LKDRKAIRKSQKYD--VVCEGTM----AMLVIRGASLKDAGEYTCEVEASKSTASLHVE 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKY 369
           PP  ++ P  ++       +++CK    P+P I W  EG      D R +  +  +G   
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT--IQEQGT-- 63

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
              L++K+ R  DTG Y C   +  GE + +  L++ 
Sbjct: 64  ---LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+   P  ++ P            +KCK +  P P + W K             I  
Sbjct: 1   GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE 60

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
               T     +I +    D+GTY C   +  GE++ +  L++  
Sbjct: 61  --QGTL----QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDT 160
            P   + P           +++C     P+P I W  +G        R  + ++      
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---- 63

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
               L+I N    D G Y C A +S GE++ +  L+
Sbjct: 64  ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 44 TLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          T      R        L IKN++ SD+G Y  +A + +GE S +  L+
Sbjct: 48 TFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-------HIEQ 507
           P+I + P   T++   T +++CK      P ++W+KE  T    +            I+ 
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68

Query: 508 VK 509
           ++
Sbjct: 69  LR 70

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
                ++ K      G+    EC +         +W   GK +  + R     T +G KY
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQ--ATRQGRKY 65

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
              L V++    D G    +++    +  A+L 
Sbjct: 66  --ILVVREAAPSDAGEVVFSVRGLTSK--ASLI 94

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIV 258
           G +G+       ++ + +    G     +C  S         W    K V  SS+ +   
Sbjct: 1   GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT- 59

Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297
             Q   Y ++  + +    D+G    +V+     S A+L
Sbjct: 60  -RQGRKYILV--VREAAPSDAGEVVFSVRGL--TSKASL 93

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 105 PRFPK--KPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
               K  K     +G+    ECVL   S     +W  G K +  + R + +     +   
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT-----RQGR 63

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGE 188
              L +      D G    +      +
Sbjct: 64  KYILVVREAAPSDAGEVVFSVRGLTSK 90

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
             G  +  S R      +   +     +L ++    SD+GE     +    + S  V 
Sbjct: 44 TVGGKTVGSSSRF--QATRQGRK----YILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
                +         G+    E ++ ++P     W  +G+ L  +      +   G K+ 
Sbjct: 5   LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCE--IIEDGKKH- 60

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             L + + +   TG       N      ANL 
Sbjct: 61  -ILILHNCQLGMTGEVSFQAANTKSA--ANLK 89

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           GA       +    +    G     + + S +P    +W    + +  S   +II + + 
Sbjct: 1   GAMALIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
                   + +     +G       N   +S ANL 
Sbjct: 60  HI----LILHNCQLGMTGEVSFQAANT--KSAANLK 89

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 8/85 (9%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
                 K         G+    E  L + P     W    + +  +   ++ +     D 
Sbjct: 4   ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DG 57

Query: 161 YLLRLEINNPTKDDGGNYRCNACNS 185
               L ++N      G     A N+
Sbjct: 58  KKHILILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
            KG  L  S      +++D  +     +L + N Q   +GE    A N     +  V
Sbjct: 39 KLKGQPLAASPDCE--IIEDGKK----HILILHNCQLGMTGEVSFQAANTKSAANLKV 90

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P   +   + +    G  V M  +V ++   +++W   G EL + D        K D   
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             L   D  +ED G Y+        E  A L 
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGGQCE--AELI 96

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+      +          G  ++M  + S +   +V W K    +      K    
Sbjct: 1   GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYR 59

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
            + D    I   +D +  D G Y+       G+  A L 
Sbjct: 60  FKKDGKRHILIFSDVVQEDRGRYQVITNG--GQCEAELI 96

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 102 GKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
                        Q   GD + M   + +     ++W +    +      K ++    KD
Sbjct: 6   SGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKD 63

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193
                L  ++  ++D G Y+       G+  A +
Sbjct: 64  GKRHILIFSDVVQEDRGRYQVITNG--GQCEAEL 95

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKD 510
            +I    +   +     V +  +V S     V WMK    +  ++         KD
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKD 63

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 310 DPPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
           D  ++I  P  +        + VV+ C++  +P  E+ W  +G+E+ ++  +     L+ 
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL----LLQK 63

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
           +    RL +   + ED+G Y C I +     +  +T+    VR I 
Sbjct: 64  EDTVRRLVLPAVQLEDSGEYLCEIDD--ESASFTVTVTEPPVRIIY 107

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 95  GKLKVPGGKAPRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI 149
           G     G     +   P+          + +V+ C L   P  ++ W +  + + ++  +
Sbjct: 1   GSSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59

Query: 150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
            + K     +  + RL +     +D G Y C  
Sbjct: 60  LLQK-----EDTVRRLVLPAVQLEDSGEYLCEI 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 207 APSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
             S+I  P      +      + + C+   +P  EV+W K  + V ES  + +   ++D 
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQ--KEDT 66

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS 322
              ++  +      DSG Y C + +E   ++  + +          +PP  I      S
Sbjct: 67  VRRLV--LPAVQLEDSGEYLCEIDDE--SASFTVTVT---------EPPVRIIYSGPSS 112

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
              F E+      +     V  CK    P   + W     EL+ + +     + +G    
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQ--PSQEGLTL- 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
            RL +    K D+  Y C+I        A L 
Sbjct: 64  -RLTISALEKADSDTYTCDIGQAQSR--AQLL 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+  A  F E+   +  E        CK    P   V W K    ++ S K +    
Sbjct: 1   GSSGSSGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPS-- 57

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
           ++  T  +   I+     DS TY C++     +S A L 
Sbjct: 58  QEGLTLRLT--ISALEKADSDTYTCDIGQA--QSRAQLL 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 102 GKAPRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
             A  F ++ T  Q  +    V  C  E  P   + W +G   +  +G+ + S+     +
Sbjct: 6   SGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ-----E 59

Query: 160 TYLLRLEINNPTKDDGGNYRCNA 182
              LRL I+   K D   Y C+ 
Sbjct: 60  GLTLRLTISALEKADSDTYTCDI 82

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
                L+ S +      Q+         LTI  ++K+DS  Y        G+  S   L
Sbjct: 42 RKGLLELRASGKHQ--PSQEGLT----LRLTISALEKADSDTYTCDI----GQAQSRAQL 91

Query: 89 N 89
           
Sbjct: 92 L 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
               E    + + +K T V  CK       +VTW K    ++   KH    E
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P  F +  K +    G    ++C++    +  + W    + L+   R S  +   G +  
Sbjct: 8   PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYS--LKQDGTRC- 62

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK 412
             L++ D    D G Y C          A LT+     RF +
Sbjct: 63  -ELQIHDLSVADAGEYSCMCGQERTS--ATLTVRALPARFTE 101

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+     F +  +      G    ++C+ S      V+W K  + +++  +  +   
Sbjct: 1   GSSGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLK-- 56

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
           +     E+   I D    D+G Y C    E   ++A L +           P  F E   
Sbjct: 57  QDGTRCELQ--IHDLSVADAGEYSCMCGQE--RTSATLTV--------RALPARFTEGSG 104

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
              RF +        +G    ++C  E S +  + W +G + + D GR  +      +D 
Sbjct: 7   GPARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLK-----QDG 59

Query: 161 YLLRLEINNPTKDDGGNYRCNA 182
               L+I++ +  D G Y C  
Sbjct: 60  TRCELQIHDLSVADAGEYSCMC 81

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
                L+   R S  L QD +R      L I ++  +D+GEY  +   +    + TV 
Sbjct: 41 KKGPETLRDGGRYS--LKQDGTR----CELQIHDLSVADAGEYSCMCGQERTSATLTVR 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 6/93 (6%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
               +     ++   GK + ++C++         W   G  +Q++DR+   V  KG  + 
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLK--VVQKGRIH- 61

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL 403
            +L + +   ED G Y      ++  L A + +
Sbjct: 62  -KLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 207 APSFIEKPR---IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
               +       +   +   L     KC        KW K    V+ES ++K++      
Sbjct: 7   GLKILTPLTDQTVNLGKEICL-----KCEISENIPGKWTKNGLPVQESDRLKVVQK--GR 59

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL 299
            ++++  I + +  D G Y            A +++
Sbjct: 60  IHKLV--IANALTEDEGDYVFAPDAYNVTLPAKVHV 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
           G    +            G  + ++C  E S      W +    ++++ R+K+ +     
Sbjct: 4   GSSGLKILTPLTDQTVNLGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQ----- 56

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN 192
              + +L I N   +D G+Y            A 
Sbjct: 57  KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAK 90

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 12/95 (12%)

Query: 2  TFPKELKSYT-LEGEPTK---QIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAV 57
               L   T   G+      +I  N        G  ++ SDRL   +VQ          
Sbjct: 9  KILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRL--KVVQKGRI----HK 62

Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
          L I N    D G+Y           +    ++   
Sbjct: 63 LVIANALTEDEGDYVFA--PDAYNVTLPAKVHVIS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P     + +      G L+ + C+++   +  I W  +G +L +++R      + G+   
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTR----ITGE--- 60

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             +EV+D    D+GLY C   +  G      ++N+
Sbjct: 61  -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 60.6 bits (147), Expect = 9e-12
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 105 PRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
              P +        GDLL + C L       I W +    + ++ R +++ +        
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEE------- 61

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
             +E+ +    D G Y C   +  G      ++N
Sbjct: 62  --VEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
                +   +    G L+Q++C+        + W +    + ES++ +I           
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE-------- 60

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
             E+ D I  DSG Y C   +  G      ++N+
Sbjct: 61  EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 6/33 (18%), Positives = 18/33 (54%)

Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           + +++   +DSG Y  +  + +G  ++  ++N
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKY 369
           PP   + P  ++       V+ C     P+P I+W  +G  +   D RI       G   
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK--QLENGV-- 63

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
              L+++  +  DTG Y C      GE   +  + ++
Sbjct: 64  ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 13/120 (10%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+   P   + P            + C  +  P P + W K   LV         + 
Sbjct: 1   GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPK 319
            ++       +I      D+G Y C      GE+  +  + ++       +    ++ P+
Sbjct: 60  -ENGVL----QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ-------EFGVPVQPPR 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 104 APRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKD 159
            P   + P   T+       V+ CV   SP+P I+W + G  V     RIK  +  +   
Sbjct: 8   PPVIRQGPVNQTV-AVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--- 63

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPR 215
                L+I      D G Y C A    GE+  +  +  Q            ++ PR
Sbjct: 64  -----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-------FGVPVQPPR 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIE 506
           PVIR+ P   T++   T V+ C       P++ W K+   V   +  +  +E
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE 60

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 43  STLVQDQSRLYYLA--VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP 100
             +    SR+  L   VL I+  +  D+G Y  IA   +GE + +           ++V 
Sbjct: 47  VLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSA---------YIEVQ 97

Query: 101 GGKAPRFPKKPT 112
               P  P +PT
Sbjct: 98  EFGVPVQPPRPT 109

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 67.6 bits (165), Expect = 6e-14
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 17/127 (13%)

Query: 80  GEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH-QDGDLLVMECVLEASPMPD-IIWY 137
           G   S+  L        +  P    P      T H   G+   ++C + ++P PD I W 
Sbjct: 1   GSSGSSGTLT-------VNGP----PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWS 49

Query: 138 QGTKVIE--DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGESNANIA 194
               V+E   +GR  +   S   +  +  L I+N  + D    Y C A NS G     I 
Sbjct: 50  WKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108

Query: 195 LNFQGGE 201
           L  QG E
Sbjct: 109 LKEQGSE 115

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEG 349
           G S ++  L +         PP         +  G K   ++C +++ P P+ I W  + 
Sbjct: 1   GSSGSSGTLTVNG-------PPIISSTQTQHALHGEK-GQIKCFIRSTPPPDRIAWSWKE 52

Query: 350 KELQ--QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHGELNANLTLNIE 406
             L+   + R +       +     L + +  + D   +Y C   N  G     + L  +
Sbjct: 53  NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTY 265
            P  I   +      G   Q+KC   + P P+ + W   + +++  +  +  V       
Sbjct: 13  GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 266 EIICE--ITDPIGPDSGT-YRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
            +I    I++ +  D  T Y C   N FG     + L  +        P +
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS--GPSS 121

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTVN 87
             K ++L+       T+    +    ++ LTI N+ ++D    Y   A N  G  +  + 
Sbjct: 49  SWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108

Query: 88  L 88
           L
Sbjct: 109 L 109

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 66.6 bits (163), Expect = 7e-14
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
              F +KP+      G   V E +   +   ++ W   G ++  +++    +  +G ++ 
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYG--LATEGTRH- 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             L V++    D G Y     +   +   +L 
Sbjct: 64  -TLTVREVGPADQGSYAVIAGSSKVK--FDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
            +F +KPR +   +G+    + +   +   +V+W +    +  S+K  +    +   + +
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQRGGSDISASNKYGLA--TEGTRHTL 65

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
              + +    D G+Y     +   +   +L 
Sbjct: 66  T--VREVGPADQGSYAVIAGSS--KVKFDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 105 PRFPKKPTIHQ--DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
             F KKP   +   G   V E          + W +G   I  + +  ++      +   
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT-----EGTR 62

Query: 163 LRLEINNPTKDDGGNYRCNA 182
             L +      D G+Y   A
Sbjct: 63  HTLTVREVGPADQGSYAVIA 82

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
             GS +  S++    L  + +R      LT++ V  +D G Y VIA    G      +L
Sbjct: 42 QRGGSDISASNKYG--LATEGTR----HTLTVREVGPADQGSYAVIA----GSSKVKFDL 91

Query: 89 NFSE 92
             E
Sbjct: 92 KVIE 95

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 33/226 (14%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPD-----IIWYQGTKVI---------------EDTG 147
           PK   + + G  + +EC        D     + W    K I                   
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
           R ++ K  +      L+  I +    D G YRC   +  G     I +            
Sbjct: 67  RARLLKDQLSLGNAALQ--ITDVKLQDAGVYRCMI-SYGGADYKRITVKVN-------AP 116

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
            + I +  ++ +   +  ++ C+    P+ EV W  +D  V            ++  + +
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPT 313
              +       +  + C  +    E N    L I     P   PP 
Sbjct: 177 TSTLRINTT-TNEIFYCTFRRLDPEENHTAELVI--PELPLAHPPN 219

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 14/141 (9%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           A L I +V+  D+G Y+ +                  +   +KV         +   +  
Sbjct: 80  AALQITDVKLQDAGVYRCMISYG----------GADYKRITVKVNAPYNKINQRILVVDP 129

Query: 116 DGDLLVMECVLEASPMPDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
                 + C  E  P  ++IW     +V+        SK+          L IN      
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TT 186

Query: 175 GGNYRCNACNSIGESNANIAL 195
              + C       E N    L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 32/197 (16%)

Query: 231 CSAKPRPE-------VKWFKADKLVKESSKIKIIVNEQDDTY--------EIICE----- 270
           C      +       V W   DK + +    +  +  Q  +Y        + +       
Sbjct: 23  CKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL 82

Query: 271 -ITDPIGPDSGTYRCNVKN-EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKL 328
            ITD    D+G YRC +           + +N          P   I +  +  +     
Sbjct: 83  QITDVKLQDAGVYRCMISYGGADYKRITVKVN---------APYNKINQRILVVDPVTSE 133

Query: 329 VVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
             + C+ +  P  E++W     ++      + N   +   +++   ++        ++ C
Sbjct: 134 HELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR-INTTTNEIFYC 192

Query: 389 NIKNFHGELNANLTLNI 405
             +    E N    L I
Sbjct: 193 TFRRLDPEENHTAELVI 209

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P  F E  K      G    + C + +   P + W +    L+  D+ S  +  +G    
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYS--LRQEGAML- 63

Query: 371 IRLEVKDPRKEDTGLYKC 388
             L V++ R +D+G Y C
Sbjct: 64  -ELVVRNLRPQDSGRYSC 80

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 200 GENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVN 259
           G +G+     F E  + +    G    ++C  S+   P VKW   + +++   K  +   
Sbjct: 1   GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLR-- 57

Query: 260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
           ++    E++  + +    DSG Y C+  ++   ++A L 
Sbjct: 58  QEGAMLELV--VRNLRPQDSGRYSCSFGDQ--TTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
              RF +        +G    + CVL +   P + W  G  V+    +  + +     + 
Sbjct: 7   GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EG 60

Query: 161 YLLRLEINNPTKDDGGNYRCNA 182
            +L L + N    D G Y C+ 
Sbjct: 61  AMLELVVRNLRPQDSGRYSCSF 82

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 17/95 (17%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 311 PPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
            P  I  P+ +        + VV+ C++ ++      W+ +G+++++++ +   V + G 
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLV--VKMDGR 63

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
           K+  RL + + + +D+G ++C  +         +T
Sbjct: 64  KH--RLILPEAKVQDSGEFECRTEGVSAF--FGVT 94

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 207 APSFIEKPRIIPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
            P  I  P+   +    +   + + C+ S +      W+K  + V+ES  + +       
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCELS-RVDFPATWYKDGQKVEESELLVVK--MDGR 63

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
            + +I  + +    DSG + C  +     +   + 
Sbjct: 64  KHRLI--LPEAKVQDSGEFECRTEGV--SAFFGVT 94

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 104 APRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
            P     P           + +V+ C L +       WY+  + +E++  + +       
Sbjct: 7   GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM----- 60

Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
           D    RL +      D G + C  
Sbjct: 61  DGRKHRLILPEAKVQDSGEFECRT 84

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN 87
          Y  G  ++ S+ L   +  D  +      L +   +  DSGE++   +  +     TV 
Sbjct: 44 YKDGQKVEESELLV--VKMDGRK----HRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 288 NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH 347
           +       +  L + A       P  F E  +      G   V+ C++    M  + W+ 
Sbjct: 2   SSGSSGRTSAMLTVRAL------PIKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWK 53

Query: 348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC 388
             + L+  DR S  +   G +    L+++    ED G Y C
Sbjct: 54  GHETLRDGDRHS--LRQDGARC--ELQIRGLVAEDAGEYLC 90

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 77  NKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDI 134
           +    G ++  L                 +F +        +G   V+ C  E S M  +
Sbjct: 2   SSGSSGRTSAMLTVRA----------LPIKFTEGLRNEEATEGATAVLRC--ELSKMAPV 49

Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
            W++G + + D  R  +      +D     L+I     +D G Y C  
Sbjct: 50  EWWKGHETLRDGDRHSLR-----QDGARCELQIRGLVAEDAGEYLCMC 92

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
              F E  R      G    ++C+ S      V+W+K  + +++  +  +      D   
Sbjct: 19  PIKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHSLR----QDGAR 72

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
              +I   +  D+G Y C    E   ++A L 
Sbjct: 73  CELQIRGLVAEDAGEYLCMCGKE--RTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
           +     L+  DR   +L QD +R      L I+ +   D+GEY  +     G+  ++  L
Sbjct: 52  WKGHETLRDGDRH--SLRQDGAR----CELQIRGLVAEDAGEYLCMC----GKERTSAML 101

Query: 89  N 89
            
Sbjct: 102 T 102

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 39/201 (19%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
                +P  I       + + C+ +  P  + ++WF    L+   ++        ++   
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN--- 61

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                      DSG Y C           +L +               ++ P +  ++G 
Sbjct: 62  -----------DSGEYTCQTGQTSLSDPVHLTVLF---------EWLVLQTPHLEFQEG- 100

Query: 327 KLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           + +++ C     KP+ ++ +F  GK  + +             + I           +G 
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------LDPTFSIP----QANHSHSGD 148

Query: 386 YKCNIKNFHGELNAN-LTLNI 405
           Y C     +   ++  +T+ +
Sbjct: 149 YHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 50/206 (24%)

Query: 108 PKKPTI--------HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGK 158
           P K  +            D + + C    SP  D I W+    +I    +          
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------- 51

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
                         +D G Y C    +      +  L          F    ++ P +  
Sbjct: 52  -----PSYRFKANNNDSGEYTCQTGQTSLSDPVH--LTVL-------FEWLVLQTPHLEF 97

Query: 219 NESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
            E G  I ++C     KP  +V +F+  K  K S          D T+ I          
Sbjct: 98  QE-GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------LDPTFSI-----PQANH 143

Query: 278 -DSGTYRCNVKNEFGESNAN-LNLNI 301
             SG Y C     +   ++  + + +
Sbjct: 144 SHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 26/136 (19%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
                   +DSGEY           S  V+L    E   L+ P              Q+G
Sbjct: 53  SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTP----------HLEFQEG 100

Query: 118 DLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           + +++ C          + ++Q  K            K    D       I        G
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQ----------KFSHLDP---TFSIPQANHSHSG 147

Query: 177 NYRCNACNSIGESNAN 192
           +Y C         ++ 
Sbjct: 148 DYHCTGNIGYTLFSSK 163

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 68.4 bits (166), Expect = 5e-13
 Identities = 36/255 (14%), Positives = 74/255 (29%), Gaps = 57/255 (22%)

Query: 117 GDLLVMECVL---EASPMPDIIWY--QGTKVIEDTGRIKMSKKSIGKDTYLLR------- 164
           G+ ++M CV+   E   +  + W   +      +      S  S+    +  R       
Sbjct: 20  GESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT 79

Query: 165 ------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
                 L + +  K D G Y C              +                E+PR + 
Sbjct: 80  FHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW----------VLPEEPRDLR 129

Query: 219 NESGTLIQMKCKCSAKPRPE---VKWFKADK-------LVKESSKIKIIVNEQDDTYEII 268
              G   QM+C   +        V W  +         ++   S ++    +    +   
Sbjct: 130 VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNR 189

Query: 269 CEITDPIGP-------------DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI 315
            ++T  I               D G Y C++     ES   + L++  +           
Sbjct: 190 VDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD------EFQRT 243

Query: 316 EKPKIRSEQGGKLVV 330
             P   +++G + ++
Sbjct: 244 ISPTPPTDKGQQGIL 258

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.3 bits (158), Expect = 5e-12
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 34/176 (19%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
             L +++VQK+D G Y    + KN        +       +L V     P  P+   +  
Sbjct: 84  GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV-------ELWVL----PEEPRDLRVRV 132

Query: 116 DGDLLVMECVLEASPMPDII---WY--QGTKVIEDTGRIKMSKKSIGKDTYLLR------ 164
            GD   M C ++++    +    W    G+   E+T     S    GK   L R      
Sbjct: 133 -GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191

Query: 165 -----------LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPS 209
                      +++    + D G Y C+      ES   I L+    E     +P+
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPT 247

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.3 bits (158), Expect = 6e-12
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 52/240 (21%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSA---KPRPEVKWFK-------ADKLVKESSKIKII 257
           P        +    G  + M C       K    V W         ++ ++   S + + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 258 VNEQDDTYEIICE---------ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPE 308
                +   ++ +         + D    D G Y C ++ +         + +       
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV----- 120

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE---IVWFHEGKELQQTDRISW----- 360
                  E+P+    + G    M C +++        + W        + + +       
Sbjct: 121 -----LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNM 175

Query: 361 -------------NVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                         V L GD       ++++  ++ D G+Y C+I     E    + L++
Sbjct: 176 RSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA---KPMPEIVWFHEGKELQQTDRISW---NVTL 364
            P             G+ V+M C V+    K +  + W     +   ++ + +   N+++
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 365 KGDKYHIR-------------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
              ++  R             L ++D +K D G+Y C I+  +  +     + + ++   
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124

Query: 412 KYRVRSNKG 420
              +R   G
Sbjct: 125 PRDLRVRVG 133

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
                ++ +  +   G+ V +EC+V ++    + WF  G+E+           ++ +   
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGP--KSRYRIRVEGKK 63

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
             L ++   K D   Y            A L+
Sbjct: 64  HILIIEGATKADAAEYSVMTTGGQSS--AKLS 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
                ++        G  ++++C+ S +    VKWFK  + +    K +  +  +   + 
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
           +I  I      D+  Y        G+S+A   L+++ ++ P
Sbjct: 66  LI--IEGATKADAAEYSVMTTG--GQSSA--KLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 101 GGKAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSI 156
           G       K+   T    G+ + +EC + +    ++ W++  + I      R ++     
Sbjct: 4   GSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV--- 59

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI 193
             +     L I   TK D   Y        G+S+A +
Sbjct: 60  --EGKKHILIIEGATKADAAEYSVMTTG--GQSSAKL 92

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNL 88
          +  G  +    +    +  +  +     +L I+   K+D+ EY V+          +V+L
Sbjct: 41 FKNGEEIIPGPKSRYRIRVEGKK----HILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD---RIS 359
                E  PP  +E P       G+   + CK + +P P I W+  G+ ++      R  
Sbjct: 1   GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60

Query: 360 WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL---NANLTLN 404
             +   G  + +R+      + D G+Y C  +N+ GE    +A+L + 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD-- 159
            PR  + P   I   G+   + C  E  P P I WY+G + +E       S + +     
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQG 199
            + LR+     ++ D G Y C A N +GE+ + + +L    
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK---IIVNEQD 262
           F P  +E P  +    G    + CK   +P P ++W+K  + V+          ++    
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEA 303
             + +         PD G Y C  +N  GE+   +A+L +   A
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 447 SVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN 499
           S+      P I E P  + +SK +   + CK      P++ W K    V+ D 
Sbjct: 2   SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 311 PPTFIEKPKIRSEQG---GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
              F ++     E     G    + C+V A+   E+ W+ +GK+L  + ++   V   G 
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVR--VEAVGC 64

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
               RL V+   + + G Y C            L 
Sbjct: 65  TR--RLVVQQAGQAEAGEYSCEAGGQQLS--FRLQ 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 104 APRFPKKPTIHQD-----GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
              F K+   H++     G    + C + A    ++ WY+  K +  + ++++       
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEA----- 61

Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
                RL +    + + G Y C A
Sbjct: 62  VGCTRRLVVQQAGQAEAGEYSCEA 85

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 200 GENGAGFAPSFIEKPRIIPN---ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI 256
           G +G+     F ++         E+G    + C+ + + + EV W+K  K +  SSK+++
Sbjct: 1   GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRV 59

Query: 257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA 305
                  T  ++  +      ++G Y C      G    +  L +  + 
Sbjct: 60  E--AVGCTRRLV--VQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 29 YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
          Y  G  L  S ++   +            L ++   ++++GEY   A  +       V
Sbjct: 45 YKDGKKLSSSSKV--RVEAVGCT----RRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSS-TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
           L  + +   D G Y +   ++N   +  TV                  P      T  ++
Sbjct: 73  LLFQMITMKDMGVYTLDMTDENYRRTQATVRF--------HVHQPVTQPFLQVTNTTVKE 124

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
            D + + C+       +I W   ++ ++ T R+ +S+           L I+   ++D G
Sbjct: 125 LDSVTLTCLSN-DIGANIQWLFNSQSLQLTERMTLSQ---NNSI----LRIDPIKREDAG 176

Query: 177 NYRCNACNSIGESNANIA 194
            Y+C   N +    +N  
Sbjct: 177 EYQCEISNPVSVRRSNSI 194

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 33/205 (16%), Positives = 62/205 (30%), Gaps = 28/205 (13%)

Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY-------E 266
           P++  + +  L+               W+K +    +    + + N   +         E
Sbjct: 9   PQVAEDNNVLLL---VHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65

Query: 267 IICE-----ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIR 321
           II              D G Y  ++ +E                           +    
Sbjct: 66  IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQA-----TVRFHVHQPVTQPFLQVTNT 120

Query: 322 SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
           + +    V + C         I W    + LQ T+R+    TL  +     L +   ++E
Sbjct: 121 TVKELDSVTLTCLSN-DIGANIQWLFNSQSLQLTERM----TLSQNNSI--LRIDPIKRE 173

Query: 382 DTGLYKCNIKNFHGELNAN-LTLNI 405
           D G Y+C I N      +N + L+I
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDI 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 12/109 (11%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW----NVTLKGDKYHIR--------L 373
              V++        +    W+         +   +    N+   G  Y  R        L
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIV 422
             +    +D G+Y  ++ + +                 +  ++     V
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTV 122

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 311 PPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
              F +   P  + ++GG+ V    ++ A P  E+ W+  G+E++ + +       KG +
Sbjct: 7   GAAFAKILDPAYQVDKGGR-VRFVVEL-ADPKLEVKWYKNGQEIRPSTKYI--FEHKGCQ 62

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKN 392
               L + + +  D   Y     +
Sbjct: 63  R--ILFINNCQMTDDSEYYVTAGD 84

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 101 GGKAPRFPKKP---TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           G     F K          G  +     L A P  ++ WY+  + I  + +         
Sbjct: 4   GSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFE----- 57

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNA 182
                  L INN    D   Y   A
Sbjct: 58  HKGCQRILFINNCQMTDDSEYYVTA 82

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 207 APSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
             +F +        + G  ++   + +  P+ EVKW+K  + ++ S+K       +    
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFE--HKGCQR 63

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
            +   I +    D   Y     +E  + +  L 
Sbjct: 64  ILF--INNCQMTDDSEYYVTAGDE--KCSTELF 92

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 39/200 (19%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
                +P+         + +KC+ +  P     +WF  + L+   +    I     +   
Sbjct: 8   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVN--- 64

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                      DSG YRC            L ++              ++ P+   ++  
Sbjct: 65  -----------DSGEYRCQTNLSTLSDPVQLEVH---------IGWLLLQAPRWVFKEE- 103

Query: 327 KLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
             + + C         ++ +   GK+ +               +HI         +D+G 
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIP----KATLKDSGS 151

Query: 386 YKCNIKNFHGELNANLTLNI 405
           Y C        +++  T+NI
Sbjct: 152 YFCRGLVGSKNVSSE-TVNI 170

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 44/201 (21%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
           P+  ++ +  D + ++C    SP  +   W+    +I                       
Sbjct: 14  PQWYSVLE-KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYF 57

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
           I+  T +D G YRC    S         L               ++ PR +  E    I 
Sbjct: 58  IDAATVNDSGEYRCQTNLSTLSDPVQ--LEVH-------IGWLLLQAPRWVFKE-EDPIH 107

Query: 227 MKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRC 284
           ++C         +V + +  K  K            +  + I           DSG+Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHI-----PKATLKDSGSYFC 154

Query: 285 NVKNEFG-ESNANLNLNI-EA 303
                    S+  +N+ I +A
Sbjct: 155 RGLVGSKNVSSETVNITITQA 175

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 26/132 (19%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
             I     +DSGEY+          S  V L        L+ P            + ++ 
Sbjct: 56  YFIDAATVNDSGEYRCQT--NLSTLSDPVQLEVHIGWLLLQAP----------RWVFKEE 103

Query: 118 DLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           D + + C    +     + + Q  K  +                      I   T  D G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD-------------FHIPKATLKDSG 150

Query: 177 NYRCNACNSIGE 188
           +Y C        
Sbjct: 151 SYFCRGLVGSKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 17/96 (17%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV-WFHEGKELQQTDRISWNVTLKGDKY 369
                 +P+  S      V ++C+    P      WFH    +                 
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------ 54

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                +      D+G Y+C        L+  + L +
Sbjct: 55  --SYFIDAATVNDSGEYRCQTNL--STLSDPVQLEV 86

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 63.8 bits (155), Expect = 5e-12
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 50/206 (24%)

Query: 108 PKKPTI--------HQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGK 158
           P+KP +           G+ + + C            W+    + E+T            
Sbjct: 2   PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------- 51

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP 218
                 L I N   +D G Y+C            + +               ++    + 
Sbjct: 52  -----SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSD---------WLLLQASAEVV 97

Query: 219 NESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
            E G  + ++C         +V ++K  + +K           ++    I          
Sbjct: 98  ME-GQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISI-----TNATV 143

Query: 278 -DSGTYRCNVKNEFGESNAN-LNLNI 301
            DSGTY C  K    +  +  LN+ +
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 39/201 (19%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
           P     P       G  + + C  +        KWF    L +E++    IVN + +   
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFE--- 61

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                      DSG Y+C  +         L +          D        ++  E  G
Sbjct: 62  -----------DSGEYKCQHQQVNESEPVYLEVFS--------DWLLLQASAEVVME--G 100

Query: 327 KLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           + + + C       + +++++ +G+ L+           +     I     +   ED+G 
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISIT----NATVEDSGT 148

Query: 386 YKCNIKNFHGELNAN-LTLNI 405
           Y C  K +  +  +  L + +
Sbjct: 149 YYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L I N +  DSGEYK   +      S  V L    +   L+              +  +G
Sbjct: 53  LNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQAS----------AEVVMEG 100

Query: 118 DLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
             L + C    +  +  +I+Y+  + ++                    + I N T +D G
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------------NISITNATVEDSG 147

Query: 177 NYRCNACNSIGESNANIA 194
            Y C       +  +   
Sbjct: 148 TYYCTGKVWQLDYESEPL 165

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
               + +P+  +   G  V + C+V A+P P+I W  +G  L                  
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV----------- 58

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHG--ELNANLTLNI 405
             L + +   +D G Y C   +     + +  ++++I
Sbjct: 59  --LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
               + +P       G  + + C+  A+P P++ W K    +                  
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLI 60

Query: 267 IICEITDPIGP-DSGTYRCNVKNEFG--ESNANLNLNI 301
           +       IGP D GTY C   +     + +  ++++I
Sbjct: 61  L-----PEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             +   +P       G  + + C + A P P I W +      D   + +    +     
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK------DGVPLPLPPSPV----- 58

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              L +      D G Y C A +S      + A++
Sbjct: 59  ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
             +   P+   ++   TV + C+V +   P + WMK+   +      V+ + ++ 
Sbjct: 11  VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIG 65

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          VL +  +   D G Y  +A + +     +  ++
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 13/92 (14%)

Query: 309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           G       +P  +    G  +V++C     P+P   WF     L    +           
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
                 V     E  G Y C++ N     ++ 
Sbjct: 52  ----YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 102 GKAPRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGK 158
           G   +   +PT      G  LV++CV   SP+P   W++    +  +T ++         
Sbjct: 1   GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL--------- 51

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL 195
                   +     +  G Y C+  N     ++    
Sbjct: 52  ------YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
                +P       G+ + ++C     P P  +WFK +  +   +K   +          
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM---------- 53

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNAN 296
              +        GTY C+V N+    ++ 
Sbjct: 54  ---VPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 10/55 (18%), Positives = 20/55 (36%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVK 509
             I   P    +    T+V++C  +    P   W K +  +  + K +  +  V 
Sbjct: 4   LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVD 58

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 1/38 (2%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLNFSE 92
           +  +  V     G Y     N      S  V +   E
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
              F +K         G  + +  ++ A    E+ W   G+E+Q +         +    
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGS---KYIFESIGA 70

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
              L +      D   Y+C +          L 
Sbjct: 71  KRTLTISQCSLADDAAYQCVVGGEKCS--TELF 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 207 APSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
           + +F +K         G  I++  + +     EVKW K  + ++ S   K I        
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGS-KYIFESIGAKR 72

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLN 298
            +   I+     D   Y+C V  E  + +  L 
Sbjct: 73  TLT--ISQCSLADDAAYQCVVGGE--KCSTELF 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 103 KAPRFPKKPTIHQ---DGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGK 158
           K+  F KK         G  + +   L A    ++ W + G ++     +          
Sbjct: 14  KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES----- 67

Query: 159 DTYLLRLEINNPTKDDGGNYRCNA 182
                 L I+  +  D   Y+C  
Sbjct: 68  IGAKRTLTISQCSLADDAAYQCVV 91

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 446 YSVLTLSV---VPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV 502
           +   ++         +++     +SK   + +  ++ + ++  V W+K    ++      
Sbjct: 5   HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKY 63

Query: 503 VHIEQ 507
           +    
Sbjct: 64  IFESI 68

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 5/58 (8%)

Query: 29  YHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV 86
              G  ++MS            R      LTI     +D   Y+ +   +       V
Sbjct: 50  LKNGQEIQMSGSKYIFESIGAKR-----TLTISQCSLADDAAYQCVVGGEKCSTELFV 102

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 32/139 (23%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           LTI N+  SD  EY++ + N     +    L   E      V          KP I+ + 
Sbjct: 62  LTIYNLTSSDEDEYEMESPNIT--DTMKFFLYVLE-----MVS---------KPMIYWEC 105

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
               + C +      ++  YQG + +                    +  ++    +    
Sbjct: 106 SNATLTCEVLEGTDVELKLYQGKEHLRSLR----------------QKTMSYQWTNLRAP 149

Query: 178 YRCNACNSIGESNANIALN 196
           ++C A N + + +    +N
Sbjct: 150 FKCKAVNRVSQESEMEVVN 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 21/177 (11%), Positives = 51/177 (28%), Gaps = 34/177 (19%)

Query: 129 SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL-----RLEINNPTKDDGGNYRCNAC 183
            P+ +++W +    + +    +    S  K+   L      L I N T  D   Y   + 
Sbjct: 21  VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80

Query: 184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK 243
           N        + +               + KP I      +   + C+       E+K ++
Sbjct: 81  NITDTMKFFLYV----------LEM--VSKPMI--YWECSNATLTCEVLEGTDVELKLYQ 126

Query: 244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300
             + ++   +  +     +                   ++C   N   + +    +N
Sbjct: 127 GKEHLRSLRQKTMSYQWTNL---------------RAPFKCKAVNRVSQESEMEVVN 168

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 35/176 (19%)

Query: 235 PRPEVKWFKADKLVKE--SSKIKIIVNEQDDTYEIIC----EITDPIGPDSGTYRCNVKN 288
           P  EV W K    V E  +S+ +   + ++  Y         I +    D   Y     N
Sbjct: 22  PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81

Query: 289 EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE 348
                   L +          +  +   KP I  E       + C+V      E+  +  
Sbjct: 82  ITDTMKFFLYVL---------EMVS---KPMIYWECSN--ATLTCEVLEGTDVELKLYQG 127

Query: 349 GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN 404
            + L+   +                 +          +KC   N   + +    +N
Sbjct: 128 KEHLRSLRQ---------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 201 ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE 260
            + +   P FI KP       G      C+  A   P V W K D+ +K+S K     N 
Sbjct: 476 WDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN- 534

Query: 261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
             + Y +   I    G D G Y    KN +G     + LN+
Sbjct: 535 -GNDYGLT--INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 302 EAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN 361
           +A  +     P FI KP       G+     C+V A   P + W  + +EL+Q+ +    
Sbjct: 473 DAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK---- 528

Query: 362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
              + +     L +   + +D G Y    KN +G     + LN+
Sbjct: 529 YMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
            +G      C + AS  P + W++  + ++ + +          +     L IN    DD
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY-----NGNDYGLTINRVKGDD 549

Query: 175 GGNYRCNACNSIGESNANIALN 196
            G Y   A NS G     + LN
Sbjct: 550 KGEYTVRAKNSYGTKEEIVFLN 571

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 17/35 (48%)

Query: 55  LAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
              LTI  V+  D GEY V AKN  G     V LN
Sbjct: 537 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 31/139 (22%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L I NV K D G+Y +   ++       + +   E                 KP I+ + 
Sbjct: 71  LRIYNVSKEDRGDYYMRMLHETE-DQWKITMEVYEM--------------VSKPMIYWEC 115

Query: 118 DLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN 177
               + C +      ++  YQG + +    +  MS +                  +    
Sbjct: 116 SNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW----------------TNLRAP 159

Query: 178 YRCNACNSIGESNANIALN 196
           ++C A N + + +    +N
Sbjct: 160 FKCKAVNRVSQESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 42/180 (23%)

Query: 132 PDIIWYQG--TKVIEDTGRIKMSKKSIGKDTYLLR---------LEINNPTKDDGGNYRC 180
             + W      K++E        KK++ +  +  R         L I N +K+D G+Y  
Sbjct: 30  QRLTWLHTTNQKILE---YFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86

Query: 181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK 240
              +   E    I +          +    + KP I      +   + C+       E+K
Sbjct: 87  RMLHE-TEDQWKITMEV--------YEM--VSKPMIYWE--CSNATLTCEVLEGTDVELK 133

Query: 241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN 300
            ++  + ++   +  +     +                   ++C   N   + +    +N
Sbjct: 134 LYQGKEHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQESEMEVVN 178

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 32/129 (24%)

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA 337
           D G Y   + +E  E    + + +             + KP I  E       + C+V  
Sbjct: 80  DRGDYYMRMLHE-TEDQWKITMEVYEM----------VSKPMIYWE--CSNATLTCEVLE 126

Query: 338 KPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG 395
               E+  +   + L+   +  +S+  T                      +KC   N   
Sbjct: 127 GTDVELKLYQGKEHLRSLRQKTMSYQWT-----------------NLRAPFKCKAVNRVS 169

Query: 396 ELNANLTLN 404
           + +    +N
Sbjct: 170 QESEMEVVN 178

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 60.7 bits (146), Expect = 6e-11
 Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 46/190 (24%)

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
           SGT +++ C         +KW K  + + +     +++ +  +              DSG
Sbjct: 13  SGTSVELTC--PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEV------------EDSG 58

Query: 281 TYRCNVKNEFGESNANLNLNIEAEAEPEGD------------------PPTFIEKPKIRS 322
            Y C        +   L   + +  + + D                          ++  
Sbjct: 59  YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118

Query: 323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKED 382
            +G   V++ C +       I W  +G  +   +       L           KDPR   
Sbjct: 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGN-------NAKDPR--- 165

Query: 383 TGLYKCNIKN 392
            G Y+C    
Sbjct: 166 -GTYQCQGAK 174

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 19/150 (12%), Positives = 35/150 (23%), Gaps = 32/150 (21%)

Query: 58  LTIKNV-QKSDSGEYKVIAKNKNGEGSSTVNLNFSE----------------EDGKLKVP 100
           L +++  +  DSG Y       N      +                      +D K    
Sbjct: 46  LVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGS 105

Query: 101 GGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
                +   +    +    +++ C         I W +   +I      K          
Sbjct: 106 QTNKAKNLVQVDGSRGDGSVLLTCG---LTDKTIKWLKDGSIISPLNATKN--------- 153

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESN 190
                 + N  KD  G Y+C          
Sbjct: 154 ---TWNLGNNAKDPRGTYQCQGAKETSNPL 180

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 43/194 (22%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G  + + C L+     ++ W +  + +       +  +   +              +D G
Sbjct: 14  GTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSE-------------VEDSG 58

Query: 177 NYRCNACNS--------------IGESNANIALNFQGGENGAG--FAPSFIEKPRIIPNE 220
            Y C    S                ++  + A      ++ A    + +   K  +  + 
Sbjct: 59  YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118

Query: 221 SGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG 280
           S     +   C       +KW K   ++   +  K        T+ +     DP     G
Sbjct: 119 SRGDGSVLLTCGL-TDKTIKWLKDGSIISPLNATKN-------TWNLGNNAKDP----RG 166

Query: 281 TYRCNVKNEFGESN 294
           TY+C    E     
Sbjct: 167 TYQCQGAKETSNPL 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 42/188 (22%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDII-WYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
           P+   + +  D + ++C    SP      W+    +I                       
Sbjct: 14  PQWYRVLE-KDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS---------------SYF 57

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
           I+  T DD G YRC    S   S+  + L               ++ PR +  E    I 
Sbjct: 58  IDAATVDDSGEYRCQTQLSTL-SDP-VQLEVH-------IGWLLLQAPRWVFKE-EDPIH 107

Query: 227 MKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRC 284
           ++C         +V + +  K  K            +  + I           DSG+Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYFH--------HNSDFYI-----PKATLKDSGSYFC 154

Query: 285 NVKNEFGE 292
                   
Sbjct: 155 RGLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 58.0 bits (140), Expect = 6e-10
 Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 26/132 (19%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
             I      DSGEY+   +      S  V L        L+ P            + ++ 
Sbjct: 56  YFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAP----------RWVFKEE 103

Query: 118 DLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           D + + C    +     + + Q  K  +                      I   T  D G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNS-------------DFYIPKATLKDSG 150

Query: 177 NYRCNACNSIGE 188
           +Y C        
Sbjct: 151 SYFCRGLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 26/201 (12%), Positives = 59/201 (29%), Gaps = 39/201 (19%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYE 266
                +P+         + +KC+ +  P  +  +WF  + L+   +    I     D   
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVD--- 64

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG 326
                      DSG YRC  +         L ++              ++ P+   ++  
Sbjct: 65  -----------DSGEYRCQTQLSTLSDPVQLEVH---------IGWLLLQAPRWVFKE-E 103

Query: 327 KLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
             + + C         ++ +   GK  +               ++I         +D+G 
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRKYFH--------HNSDFYIP----KATLKDSGS 151

Query: 386 YKCNIKNFHGELN-ANLTLNI 405
           Y C        ++   + + I
Sbjct: 152 YFCRGLVGSKNVSSETVQITI 172

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 23/140 (16%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L + N++  D+G Y+     K     S+  L    +   ++V                  
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT-------NHSQLFQNMT 124

Query: 118 DLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
             L + C +E A       W      +     + +S                +P      
Sbjct: 125 CELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS---------------WDPRISSEQ 169

Query: 177 NYRCNACNSIGESNANIALN 196
           +Y C A N++   + +++  
Sbjct: 170 DYTCIAENAVSNLSFSVSAQ 189

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 20/201 (9%), Positives = 53/201 (26%), Gaps = 41/201 (20%)

Query: 117 GDLLVMECVLEASPMPD-IIWYQGTKVIE-------DTGRIKMSKKSIGKDTYLLR---L 165
           G+ + +     A    + I W      +         +  I ++    GK     +   L
Sbjct: 13  GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72

Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPN-----E 220
           +++N   +D G+YR           ++  L               +   ++  +      
Sbjct: 73  QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR----------QLRNIQVTNHSQLFQN 122

Query: 221 SGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDS 279
               + + C    A      +W      +     + +  + +                  
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS--------------SE 168

Query: 280 GTYRCNVKNEFGESNANLNLN 300
             Y C  +N     + +++  
Sbjct: 169 QDYTCIAENAVSNLSFSVSAQ 189

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 24/130 (18%)

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK- 336
           D+G+YR  +  +     ++  L               +       +     + + C V+ 
Sbjct: 81  DTGSYRAQISTKTSAKLSSYTLR-----ILRQLRNIQVTNHSQLFQNMTCELHLTCSVED 135

Query: 337 AKPMPEIVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH 394
           A       W   G  L       +SW                DPR      Y C  +N  
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTVSW----------------DPRISSEQDYTCIAENAV 179

Query: 395 GELNANLTLN 404
             L+ +++  
Sbjct: 180 SNLSFSVSAQ 189

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 46/308 (14%), Positives = 87/308 (28%), Gaps = 43/308 (13%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIGKDTYLLRL 165
           P K  + + G  +++ C         +        K +   G                  
Sbjct: 6   PSKVILPR-GGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG------------NNRKVY 52

Query: 166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTL 224
           E++N  +D      C +    G+S A   L          + P  +E  P       G  
Sbjct: 53  ELSNVQED--SQPMCYSNCPDGQSTAKTFLTVY-------WTPERVELAPLPSWQPVGKN 103

Query: 225 IQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
           + ++C+     PR    V   + +K +K    +         T  ++             
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---TTTVLVRRDH----HGAN 156

Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPE--GDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
           + C  + +       L  N  A  + +    P T  +    R  +      + C +    
Sbjct: 157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLF 216

Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK--CNIKNFHGEL 397
                  H     Q   R++  VT   D +  +  V     ED G  +  C +   +   
Sbjct: 217 PVSEAQVHLALGDQ---RLNPTVTYGNDSFSAKASVS-VTAEDEGTQRLTCAVILGNQSQ 272

Query: 398 NANLTLNI 405
               T+ I
Sbjct: 273 ETLQTVTI 280

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 34/261 (13%), Positives = 75/261 (28%), Gaps = 33/261 (12%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
           V  + NV   +  +    +   +G+ ++   L           P  +       P+    
Sbjct: 51  VYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTV------YWTP--ERVELAPLPSWQPV 100

Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
           G  L + C V   +P  +  ++  +G K +         ++    +   +   +      
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKEL--------KREPAVGEPAEVTTTVLVRRDH 152

Query: 174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFA----PSFIEKPRIIPNESGTLIQMKC 229
            G N+ C     +      +  N         F     P  +  PR++  E  T   + C
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL--EVDTQGTVVC 210

Query: 230 KCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPD-SGTYRCNVK 287
                 P  E +      L     ++   V   +D++     ++     + +    C V 
Sbjct: 211 SLDGLFPVSEAQVH----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVI 266

Query: 288 NEFGESNANLNLNIEAEAEPE 308
                      + I +   P 
Sbjct: 267 LGNQSQETLQTVTIYSFPAPN 287

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 20/180 (11%)

Query: 129 SPMPDIIWYQGTKVIED------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA 182
           S    +  Y   K +ED       GR  + +  I      LR  I+N T  D G Y C  
Sbjct: 45  SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR--IHNVTASDSGKYLCYF 102

Query: 183 CNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKW 241
            +      A + L             S +        + G  I ++C+ +   P+P+++W
Sbjct: 103 QDGDFYEKALVELKVAA-------LGSDLHVDVKGYKDGG--IHLECRSTGWYPQPQIQW 153

Query: 242 FKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
                    + +   +V +    Y +   +    G       C +++         +++I
Sbjct: 154 SNNKGENIPTVE-APVVADGVGLYAVAASVIMR-GSSGEGVSCTIRSSLLGLEKTASISI 211

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 15/141 (10%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQ 115
           A L I NV  SDSG+Y    ++ +    + V L  +                        
Sbjct: 83  AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL-----------GSDLHVDVKGY 131

Query: 116 DGDLLVMECV-LEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
               + +EC      P P I W         T    +    +G       + +       
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG---SS 188

Query: 175 GGNYRCNACNSIGESNANIAL 195
           G    C   +S+       ++
Sbjct: 189 GEGVSCTIRSSLLGLEKTASI 209

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 32/187 (17%)

Query: 238 EVKWFKAD--KLVKESSKIKIIVNEQDDTY-EIICEITDPIGP-------------DSGT 281
           E+KW  +   ++V   +  K + + Q   Y      + D I               DSG 
Sbjct: 38  ELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGK 97

Query: 282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPM 340
           Y C  ++      A + L + A           ++  K         + +EC+     P 
Sbjct: 98  YLCYFQDGDFYEKALVELKVAALGSD---LHVDVKGYK------DGGIHLECRSTGWYPQ 148

Query: 341 PEIVWF-HEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELN 398
           P+I W  ++G+ +         V   G   Y +   V   R        C I++    L 
Sbjct: 149 PQIQWSNNKGENIPTV---EAPVVADGVGLYAVAASVI-MRGSSGEGVSCTIRSSLLGLE 204

Query: 399 ANLTLNI 405
              +++I
Sbjct: 205 KTASISI 211

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIW---YQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
           P        G+ LV+ C         I +   Y  +K        +  K   G +     
Sbjct: 14  PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 73

Query: 165 --LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
             L I+  T+ D G Y C A + +     +  + 
Sbjct: 74  STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 53.2 bits (127), Expect = 6e-09
 Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 326 GKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIR----LEVKDPR 379
           G+ +V+ C  + +     +  W +   + Q    ++ ++  +      +    L +    
Sbjct: 23  GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 380 KEDTGLYKCNIKNFHGELNANLTLNIEMVRFI 411
           + D GLY C   +       +  + +    F+
Sbjct: 83  RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV 114

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 11  TLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE 70
           T   E    I+ N++           ++  L +          +L+ LTI  V +SD G 
Sbjct: 31  TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ--SGSEMKKFLSTLTIDGVTRSDQGL 88

Query: 71  YKVIAKNKNGEGSSTVNLN 89
           Y   A +      ++  + 
Sbjct: 89  YTCAASSGLMTKKNSTFVR 107

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 19/110 (17%)

Query: 222 GTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTYEIICE----ITDPI 275
           G  + + C    +    +   W       +    +   +  Q  +          I    
Sbjct: 23  GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQG 325
             D G Y C   +       +  + +              EKP +    G
Sbjct: 83  RSDQGLYTCAASSGLMTKKNSTFVRVH-------------EKPFVAFGSG 119

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
               +E+ + +S + G  V   C  K+K P   +VW         +  + +N  L     
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGIL----- 64

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                +++ +  D G Y C   N         TL+++
Sbjct: 65  ----TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)

Query: 108 PKKPTIHQDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
            ++    + G  +   C     SP   ++W   T+          S+           L 
Sbjct: 16  EQRSQSVRPGADVTFICTAKSKSPAYTLVW---TR---LHNGKLPSRAMDFNGI----LT 65

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
           I N    D G Y C   N          L+ Q
Sbjct: 66  IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          +LTI+NVQ SD+G Y     N       T  L+
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 14/100 (14%)

Query: 207 APSFI--EKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
            P  +  E+ R      G  +   C   S  P   + W +       S  +     + + 
Sbjct: 8   KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNG 62

Query: 264 TYEIICEITDPIGP-DSGTYRCNVKNEFGESNANLNLNIE 302
              I       + P D+GTY C   N F        L+++
Sbjct: 63  ILTI-----RNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 23/196 (11%), Positives = 61/196 (31%), Gaps = 16/196 (8%)

Query: 117 GDLLVMECVLEASPM----PDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLR----LE 166
            ++  + C    S        I W +  K++    +G + +  +   +  + +     + 
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ 226
           I      D G Y C       ++              +  A             +  + +
Sbjct: 69  ILALRPSDEGTYECVVLKYEKDAFKREH---LAEVTLSVKADFPTPSISDFEIPTSNIRR 125

Query: 227 MKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN 285
           + C  S   P P + W +  + +   +   +  + + + Y +  ++   +   + ++ C 
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTT-NHSFMCL 183

Query: 286 VKNEFGESNANLNLNI 301
           +K      N   N N 
Sbjct: 184 IKYGHLRVNQTFNWNT 199

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSE--QGGKLVVMECKV 335
           D GTY C V     ++        E  AE           P I         +  + C  
Sbjct: 76  DEGTYECVVLKYEKDAFKR-----EHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICST 130

Query: 336 K-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI--RLEVKDPRKEDTGLYKCNIKN 392
               P P + W   G+EL   +  + +   + + Y +  +L+           + C IK 
Sbjct: 131 SGGFPEPHLSWLENGEELNAIN-TTVSQDPETELYAVSSKLDFNMTTNHS---FMCLIK- 185

Query: 393 FHGELNANLTLNI 405
            +G L  N T N 
Sbjct: 186 -YGHLRVNQTFNW 197

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 17/138 (12%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH--- 114
           + I  ++ SD G Y+ +      +          E   ++ +           P+I    
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFK------REHLAEVTL---SVKADFPTPSISDFE 117

Query: 115 -QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
               ++  + C      P P + W +  + +                    +L+ N    
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---M 174

Query: 173 DDGGNYRCNACNSIGESN 190
               ++ C         N
Sbjct: 175 TTNHSFMCLIKYGHLRVN 192

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI--VWFHEGKELQQTDRISWNVTLKGDKY 369
           P    +P+ +S   G  V   C   +     +   W  + + LQ  +  ++         
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 370 HIR----LEVKDPRKEDTGLYKCNIKNFHGEL---NANLTLN 404
            +     L +++      G Y+C I N  G      A LT+N
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 50.1 bits (119), Expect = 7e-08
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDI--IWYQGTKVIEDT---GRIKMSKKSIG 157
           P+   +P       G  +   C   +S    +   W    + ++D        +  +   
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
              Y   L + N      G Y+C   N  G S +  A
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 47.0 bits (111), Expect = 9e-07
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV--KWFKADKLVKESSKIKIIVNEQDDTY 265
           P    +P       G+ +   C  ++     +   W   ++ ++++              
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 266 EIIC----EITDPIGPDSGTYRCNVKNEFGE---SNANLNLN 300
            +       + +      G Y+C + N FG      A L +N
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 38  SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS-----TVN 87
            +  +    Q    + Y  +L ++NV+ +  G Y+ +  N  G   S     T+N
Sbjct: 58  MENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 22/203 (10%)

Query: 116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG 175
              LL +   +   P+ + IW           R +++  +   + Y +  E+   T    
Sbjct: 90  PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVI--TSGHQ 147

Query: 176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP 235
           G    +                               + + +   +G     +C    + 
Sbjct: 148 GYLAIDEVK---------------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192

Query: 236 RPEVKWFKA--DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES 293
               + +    D       +IK+  + +      +   T     D+G YRC ++ E G  
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR---DAGKYRCMIRTEGGVG 249

Query: 294 NANLNLNIEAEAEPEGDPPTFIE 316
            +N    +  E      PP    
Sbjct: 250 ISNYAELVVKEPPVPIAPPQLAS 272

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 9/149 (6%)

Query: 48  DQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRF 107
           D +R +  A L I     +       +  + +    +   +           P  + P F
Sbjct: 115 DPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH------PCTRTPHF 168

Query: 108 PKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
            +   +    G     +C      +     +     + D    ++   S  +        
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA--SFN 226

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIAL 195
           + N TK D G YRC      G   +N A 
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAE 255

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 22/186 (11%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSK--IKIIVNEQDDTYEIICEITDPIGPDS 279
           G L  +  K +  P     W  +    +  ++  + I     +    I   IT       
Sbjct: 92  GLL-NVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT---SGHQ 147

Query: 280 GTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP 339
           G    +                               + +      G+    +C    + 
Sbjct: 148 GYLAIDEVKVL---------------GHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192

Query: 340 MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
           +     + +G +++        VT    ++     V +  K D G Y+C I+   G   +
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVT-SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGIS 251

Query: 400 NLTLNI 405
           N    +
Sbjct: 252 NYAELV 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 11/118 (9%)

Query: 82  GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWY--QG 139
           G    +               +      +     +G  +   C  +  P P I+W   + 
Sbjct: 365 GKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRK 424

Query: 140 TKV-IEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
             V  +  GR+ +             LE+      D G Y C A N+ G  +    L+
Sbjct: 425 HLVSAKSNGRLTVFPDGT--------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 212 EKPRIIPNES-------GTLIQMKCKCSAKPRPEVKWFK-ADKLVKESSKIKIIVNEQDD 263
            + RI   ++       G  +Q  C+    P P + W      LV   S  ++ V     
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG- 441

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                 E+      D+GTY C   N  G  +   +L++ +
Sbjct: 442 ----TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 19/101 (18%)

Query: 316 EKPKIRSEQGGKLVVME-------CKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
            + +IR  +  ++ V E       C+    P P I+W    K L               +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS--------NGR 434

Query: 369 YHIR----LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             +     LEV+  + +D G Y C   N  G  +    L++
Sbjct: 435 LTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 19/148 (12%)

Query: 56  AVLTIKNVQKSDSGEYK-VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIH 114
             L +   Q  D  +Y  V+     G   +T  LN       +          P K T+ 
Sbjct: 77  GRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN-------VFAKPEATEVSPNKGTLS 129

Query: 115 --QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRI--------KMSKKSIGKDTYLL 163
             +D    +  C     +P P I WY+  + +E    +        +  +++ G  +   
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS 189

Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNA 191
            L +     D   ++ C A  S+ E   
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRH 217

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 278 DSGTYRCNVK-NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK 336
           D   Y C V+    G + A   LN+ A+  PE        K  +   +     +  C  +
Sbjct: 88  DERDYVCVVRAGAAGTAEATARLNVFAK--PE-ATEVSPNKGTLSVMEDSAQEIATCNSR 144

Query: 337 -AKPMPEIVWFHEGKELQQTDRI-------SWNVTLKGDKYHI--RLEVKDPRKEDTGLY 386
              P P+I W+  G+ L+    +       S  V        +   L ++  + +    +
Sbjct: 145 NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASF 204

Query: 387 KC 388
            C
Sbjct: 205 HC 206

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 23/210 (10%), Positives = 54/210 (25%), Gaps = 38/210 (18%)

Query: 117 GDLLVMECVLEASPMPDII-WYQGTK-------VIEDTGRIKMSKKSIGKDTYLLR---- 164
           G  ++++C    +    ++ W+   +          +    ++                 
Sbjct: 15  GKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD 74

Query: 165 ----LEINNPTKDDGGNYRCNAC-NSIGESNANIALNFQGGENGAGFAPSFIE----KPR 215
               L +      D  +Y C     + G + A   LN           P   E    K  
Sbjct: 75  SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA-------KPEATEVSPNKGT 127

Query: 216 IIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKI-------IVNEQDDTYEI 267
           +   E        C      P P++ W++  + ++   ++          V E      +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187

Query: 268 ICEITDPIGP--DSGTYRCNVKNEFGESNA 295
              +   +       ++ C       E   
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
              P+   I + G +  ++C     PM  + W      +   G + +S  S      +L 
Sbjct: 356 MDAPRDLNISE-GRMAELKC--RTPPMSSVKW------LLPNGTV-LSHASRHPRISVLN 405

Query: 165 ---LEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              L  ++    D G Y C   N  G SNA+  LN
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
             P  ++ P+  +   G++  ++C+    PM  + W      +         +++  D  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
              L        DTG+Y C + N  G  NA+  LN+
Sbjct: 409 ---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP  ++ PR +    G + ++KC+    P   VKW   +  V   +     ++  +D   
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
               +      D+G Y C V N  G SNA+  LN+
Sbjct: 410 NFSHVLLS---DTGVYTCMVTNVAGNSNASAYLNV 441

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 6/102 (5%)

Query: 213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT 272
           K        G  + ++C    +   +V    +++ V        +   ++          
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVS-VRNGDLFF----K 306

Query: 273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF 314
                D G Y C    E      ++ L +       G   T 
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKV-YNFTLHGHHDTL 347

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G  + + C  K + M ++ W     E   +   + +V+++       L  K  + ED G+
Sbjct: 261 GDTLTIRCDTKQQGMTKV-WVSPSNEQVLSQGSNGSVSVRNG----DLFFKKVQVEDGGV 315

Query: 386 YKCNIKNFHGELNANLTLNI 405
           Y C           ++ L +
Sbjct: 316 YTCYAMGETFNETLSVELKV 335

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTK 172
             GD L + C  +   M  +      + +  + +      +           L       
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--------LFFKKVQV 310

Query: 173 DDGGNYRCNACNSIGESNANIALN 196
           +DGG Y C A         ++ L 
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELK 334

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           L  K VQ  D G Y   A  +    + +V L 
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELK 334

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 22/145 (15%)

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG 117
           L+I + +  D+G Y         E    V  ++ +    L+V               + G
Sbjct: 84  LSIGDARMEDTGSYFFRV-----ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138

Query: 118 DLLVMECVL----EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
               + C L    EA P     W                     + T    L +    +D
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNA-----------LSPLDPETTRSSELTLTPRPED 187

Query: 174 DGGNYRCNACNSIGE--SNANIALN 196
            G N  C       +  +   + LN
Sbjct: 188 HGTNLTCQMKRQGAQVTTERTVQLN 212

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 18/145 (12%), Positives = 35/145 (24%), Gaps = 23/145 (15%)

Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL 224
           L I +   +D G+Y            +                P       +       L
Sbjct: 84  LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRL 143

Query: 225 I-QMKCKCSAKPRPEVKWFKADKLVKE-----SSKIKIIVNEQDDTYEIICEITDPIGPD 278
              +   C A P     W        +     SS++ +    +D                
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDH--------------- 188

Query: 279 SGTYRCNVKNEFGE--SNANLNLNI 301
                C +K +  +  +   + LN+
Sbjct: 189 GTNLTCQMKRQGAQVTTERTVQLNV 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
             P  +E P   +   G    ++C+     +  + W      +         + +  D  
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
              L   +   +DTG+Y C + N  G   A+ TLN+
Sbjct: 399 ---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTY 265
           P  +E P  +    G   ++KC+ S      V W   +   +   + K++I V   D T 
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLS-DGTL 399

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
                 T+    D+G Y C V N  G + A+  LN+
Sbjct: 400 NF----TNVTVQDTGMYTCMVSNSVGNTTASATLNV 431

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 23/100 (23%)

Query: 110 KPTIHQD--------GDLLVMECVLEAS-PMPDIIWY--QGTKVIEDT--GRIKMSKKSI 156
            P I +         G    ++C   AS  +  + W    GT +       RI +     
Sbjct: 341 APVIVEPPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                   L   N T  D G Y C   NS+G + A+  LN
Sbjct: 399 --------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 56/225 (24%)

Query: 331 MECK---------VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKE 381
            +CK         +  + +  I+       +  T R+ W +  K ++   +  V++  + 
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRI 89

Query: 382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNP 441
           +   YK  +     E       ++    +I+ R                    R ++ N 
Sbjct: 90  N---YKFLMSPIKTEQRQP---SMMTRMYIEQR-------------------DRLYNDNQ 124

Query: 442 QFKKYSVLTLSVVPVIREV-----P-KVVTI-----SKKKTVVIE-C---KVMSMYEPSV 486
            F KY+V  L     +R+      P K V I     S K  V ++ C   KV    +  +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 487 TWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKI 531
            W+     +K  N     +E ++ +    +           +IK+
Sbjct: 185 FWL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 29/233 (12%)

Query: 135 IWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
           I+ Q          +  S K    D  +    I+N T  D G Y C         + +  
Sbjct: 49  IYNQKEGHFPRVTTVSESTKRENMDFSI---SISNITPADAGTYYCVKFRK---GSPDTE 102

Query: 195 LNFQGG---ENGAGFAPSFIEKP--RIIPNESGTLIQMKCKCSAK---PRP-EVKWFKAD 245
                G      A  +   +  P  R  P  + +       C +    PR   +KWFK  
Sbjct: 103 FKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFT-----CESHGFSPRDITLKWFKNG 157

Query: 246 KLVKESSKIKIIVNEQDDTYEIICEITDPI--GPDSGTYRCNVKNEFGESNANLNLNIEA 303
             +    +  +    +  +Y I       +          C V +   + +         
Sbjct: 158 NELS-DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDP----LRGT 212

Query: 304 EAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQ 354
               E        +   +  +    V + C+V+   P   ++ W   G   + 
Sbjct: 213 ANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 265

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI--------RLEVKD 377
           G   ++ C+V       + W +     QQT        L+ ++  +         + V D
Sbjct: 21  GGTAILTCRVDQNDNTSLQWSNPA---QQTLYFDDKKALRDNRIELVRASWHELSISVSD 77

Query: 378 PRKEDTGLYKCNIKNFHGELNANLTLNI 405
               D G Y C++        +   L +
Sbjct: 78  VSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS----IGKDTYLLRLEINNPTK 172
           G   ++ C ++ +    + W    +        K  + +    +    + L + +++ + 
Sbjct: 21  GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSL 80

Query: 173 DDGGNYRC 180
            D G Y C
Sbjct: 81  SDEGQYTC 88

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 37/290 (12%), Positives = 82/290 (28%), Gaps = 47/290 (16%)

Query: 107 FPKKPTIHQDGDLLVMECVLE-------ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
            P+ P + Q        CVL+             I+W      I       +       +
Sbjct: 9   SPESPVV-QLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII-------N 60

Query: 160 TYLLRLEINNPTKDDGGNYRCN--ACNSIGESNANIALNFQGGENGAGFAPSFIEKPRII 217
                +   +    +     CN      + ++   I +        +G  P   +    I
Sbjct: 61  RTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITII-------SGLPPEKPKNLSCI 112

Query: 218 PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGP 277
            NE      M+C+        ++     K    + K      ++D       + +  +  
Sbjct: 113 VNEGKK---MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS-TVYF 168

Query: 278 DSGTYRCNVKNEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVV------ 330
            +       +N  G+  + ++N +   + +P  +PP  +       E    L +      
Sbjct: 169 VNIEVWVEAENALGKVTSDHINFDPVYKVKP--NPPHNL-SVINSEELSSILKLTWTNPS 225

Query: 331 ------MECKVKAKPMPEIVWFHEGKELQQTDRISWNVT--LKGDKYHIR 372
                 ++  ++ +      W     E   + R S+ V       +Y  R
Sbjct: 226 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
            +     +  + + G+ + ++C    +    + W         T  ++    LK  KY +
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPS---GFTIFLNEYPVLKNSKYQL 58

Query: 372 --------RLEVKDPRKEDTGLYKCNIKNFH-GELNANLT 402
                    + V +   +D G+YKC   +         + 
Sbjct: 59  LHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVI 98

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 115 QDGDLLVMECVLEASPMPDIIW--------YQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
           ++G  L ++CV        + W        +     +    + ++   S  +    L + 
Sbjct: 14  EEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ----LSIT 69

Query: 167 INNPTKDDGGNYRCNA 182
           + N T  D G Y+C  
Sbjct: 70  VPNVTLQDEGVYKCLH 85

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 15/143 (10%)

Query: 57  VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQD 116
              + +++     +     +       +   +         + P          P     
Sbjct: 53  ARQLVDIR-EPETQPVCFFRCARRTLQARGLIRT------FQRP--DRVELMPLPPWQPV 103

Query: 117 GDLLVMEC-VLEASPMPD--IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKD 173
           G+   + C V  A P     +   +G + +    R   + +       +L   +    +D
Sbjct: 104 GENFTLSCRVPGAGPRASLTLTLLRGAQELI---RRSFAGEPPRARGAVLTATVLARRED 160

Query: 174 DGGNYRCNACNSIGESNANIALN 196
            G N+ C A   +      +  N
Sbjct: 161 HGANFSCRAELDLRPHGLGLFEN 183

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 37/263 (14%), Positives = 74/263 (28%), Gaps = 49/263 (18%)

Query: 40  RLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNG-----EGSSTVNLNFSEED 94
           +     +       +     +  V  + +G Y     + +        S+ V +  +   
Sbjct: 58  KEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGN- 116

Query: 95  GKLKVPGGKAPRFPKKPTIHQDGDLLVME-------CVLEASPMPDI-IWYQGTKVIEDT 146
                         +KP++      LV         C   +  M +    ++     + +
Sbjct: 117 -------------HRKPSLLAHPGPLVKSGERVILQC--WSDIMFEHFFLHKEGISKDPS 161

Query: 147 GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN---SIGESNANIALNFQGGENG 203
             +      + K  +     I        G YRC           S  +  L+       
Sbjct: 162 RLVGQIHDGVSKANF----SIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY 217

Query: 204 AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
              + S    P++   ES TL      CS++   +   +    L +E    +  +     
Sbjct: 218 EKPSLSAQPGPKVQAGESVTL-----SCSSRSSYD--MY---HLSREGGAHERRLPAVRK 267

Query: 264 TYEIICEITDPIGP--DSGTYRC 284
                 +   P+GP    GTYRC
Sbjct: 268 VNR-TFQADFPLGPATHGGTYRC 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	100.0
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.98
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.98
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.98
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.98
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.95
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.94
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.94
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.93
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.92
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.92
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.92
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.92
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.91
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.9
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.9
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.9
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.9
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.9
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.9
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.89
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.89
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.89
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.89
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.89
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.88
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.87
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.87
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.87
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.87
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.86
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.86
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.85
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.85
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.84
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.84
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.84
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.84
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.84
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.83
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.83
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.83
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.83
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.83
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.82
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.82
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.82
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.82
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.82
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.82
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.82
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.82
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.81
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.81
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.81
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.81
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.81
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.81
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.81
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.8
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.8
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.8
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.8
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.8
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.8
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.8
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.79
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.79
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.79
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.79
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.79
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.79
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.79
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.79
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.79
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.79
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.78
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.78
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.78
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.78
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.77
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.77
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.77
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.77
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.77
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.77
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.77
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.77
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.76
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.76
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.76
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.76
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.75
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.75
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.75
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.75
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.75
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.75
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.75
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.75
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.75
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.75
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.75
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.75
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.74
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.74
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.74
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.74
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.73
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.73
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.73
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.73
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.73
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.73
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.73
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.73
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.73
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.73
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.72
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.72
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.72
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.72
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.72
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.72
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.72
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.72
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.72
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.72
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.72
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.72
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.71
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.71
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.71
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.71
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.71
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.71
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.71
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.71
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.71
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.71
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.71
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.71
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.71
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.71
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.71
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.71
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.71
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.7
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.7
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.7
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.7
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.7
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.7
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.7
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.7
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.69
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.69
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.69
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.69
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.69
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.69
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.69
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.69
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.69
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.69
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.68
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.68
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.68
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.68
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.68
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.68
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.68
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.68
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.68
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.67
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.67
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.67
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.67
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.67
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.67
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.67
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.67
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.67
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.66
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.66
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.66
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.66
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.66
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.66
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.66
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.66
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.66
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.66
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.66
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.66
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.65
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.65
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.65
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.65
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.65
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.65
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.65
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.65
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.64
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.64
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.64
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.64
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.63
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.63
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.63
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.63
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.61
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.61
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.6
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.6
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.6
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.6
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.6
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.59
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.59
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.59
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.59
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.59
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.58
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.58
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.58
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.58
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.57
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.57
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.57
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.57
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.56
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.56
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.56
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.55
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.54
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.54
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.54
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.53
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.52
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.51
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.51
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.5
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.5
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.5
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.5
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.5
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.49
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.49
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.48
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.47
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.47
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.47
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.47
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.46
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.45
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.44
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.44
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.44
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.43
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
1he7_A	126	High affinity nerve growth factor receptor; transf	99.43
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.42
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.42
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.42
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.41
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.41
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.41
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.4
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.4
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.4
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.39
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.39
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.39
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.39
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.39
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.39
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.39
1he7_A	126	High affinity nerve growth factor receptor; transf	99.38
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.38
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.37
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.36
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.36
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.36
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.35
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.35
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.35
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.35
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.35
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.35
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.35
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.35
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.35
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.34
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.34
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.34
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.34
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.33
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.33
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.32
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.32
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.32
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.32
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.32
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.31
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.31
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.31
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.31
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.3
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.3
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.3
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.29
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.29
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.28
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.28
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.28
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.28
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.28
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.27
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.26
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.26
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.25
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.25
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.25
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.25
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.25
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.24
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.24
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.23
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.23
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.23
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.23
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.23
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.23
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.23
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.23
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.22
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.21
2ens_A	96	Advanced glycosylation END product-specific recept	99.21
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.2
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.2
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.19
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.19

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3.8e-56  Score=457.02  Aligned_cols=428  Identities=22%  Similarity=0.391  Sum_probs=345.1

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      +.|+|||||..+..+.++++.....      .++|.|.+++.+|+|.|+|.|.|..|......
T Consensus        24 ~L~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~   91 (570)
T 3b43_A           24 TLQCKVDGTPE------IRIAWYKEHTKLRSAPAYKMQFKNN------VASLVINKVDHSDVGEYTCKAENSVGAVASSA   91 (570)
T ss_dssp             EEEEEEESSSS------CEEEEECSSSBCCCCSSEEEECCTT------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEccCCC------CEEEEEECCEEccCCCCEEEEEECC------EEEEEEccCChhhCEEEEEEEEeCCceEEEEE
Confidence            36799999998      9999999999998888887764433      36899999999999999999999999877777


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .+.|.....++.+.      .......+.+|+++.|.|.+.|.|.+.+.|+|+|..+....+......  .   ...+|.
T Consensus        92 ~l~v~~~~~~p~~~------~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~--~---~~~~L~  160 (570)
T 3b43_A           92 VLVIKERKLPPSFA------RKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI--H---NVATLQ  160 (570)
T ss_dssp             EEEECCCCCCCEES------SCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEE--T---TEEEEE
T ss_pred             EEEECCCCCCCccc------ccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEE--C---CEEEEE
Confidence            77765432111111      012234567899999999999999999999999999876655443211  1   123899


Q ss_pred             EcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670          167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK  246 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  246 (540)
                      |.++..+|+|.|+|.+.|..|.......+.|....    .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       161 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~----~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~  236 (570)
T 3b43_A          161 ILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE----VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR  236 (570)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTE
T ss_pred             ECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC----CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCE
Confidence            99999999999999999999988777777776422    36667667777778899999999999999999999999999


Q ss_pred             EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeC
Q psy670          247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQG  325 (540)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~  325 (540)
                      .+.....+.+.....    ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..       +|.++..+ ....+.+
T Consensus       237 ~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~v~~  305 (570)
T 3b43_A          237 EIRPGGNYKMTLVEN----TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQ  305 (570)
T ss_dssp             ECCTTSSEEEEEETT----EEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBC-------CCEEEECCCSBCCEES
T ss_pred             ECcCCCcEEEEEECC----EEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeec-------CCcccccCCCccEEcC
Confidence            987766655543322    24799999999999999999999999887777777765       66666543 2345778


Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      |+.+.|.|.+.|.|.+.+.|+++|..+....++.+.....    ...|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus       306 g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  381 (570)
T 3b43_A          306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV  381 (570)
T ss_dssp             SCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECE
T ss_pred             CCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECC----EEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEe
Confidence            9999999999999999999999999998877665543222    237999999999999999999999999999999988


Q ss_pred             EEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCc
Q psy670          406 EMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPS  485 (540)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~  485 (540)
                      ..                                              +|.+...+....+.+|+.+.|.|.+.|.|+|+
T Consensus       382 ~~----------------------------------------------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~  415 (570)
T 3b43_A          382 KE----------------------------------------------PPVFRKKPHPVETLKGADVHLECELQGTPPFQ  415 (570)
T ss_dssp             EC----------------------------------------------CCEECSCCCCEEECTTCCEEEEEEEESSSSCC
T ss_pred             cC----------------------------------------------CCeeecCCCceeecCCCEEEEEEEEecCCCCE
Confidence            87                                              88888888888899999999999999999999


Q ss_pred             eEEEecCeecCCCCeEEE------------EEEecCCeEEEEEEeeeee
Q psy670          486 VTWMKEKNTVKEDNKHVV------------HIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       486 v~W~~~~~~l~~~~~~~~------------~~~~~~~g~y~c~~~~~~~  522 (540)
                      ++|+|+|..+..+.++.+            .+...|.|.|+|.+.+..-
T Consensus       416 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G  464 (570)
T 3b43_A          416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG  464 (570)
T ss_dssp             CEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCC
Confidence            999999999877654432            2344689999999986433

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.4e-55  Score=452.82  Aligned_cols=426  Identities=22%  Similarity=0.374  Sum_probs=343.7

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.|+      +.|.|+|||..+..+.+++.......      .+|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus       121 l~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  188 (570)
T 3b43_A          121 FECRINGSEP------LQVSWYKDGELLKDDANLQTSFIHNV------ATLQILQTDQSHVGQYNCSASNPLGTASSSAK  188 (570)
T ss_dssp             EEEEEESSSS------CEEEEEETTEECCCCSSEEEEEETTE------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEccCCC------CEEEEEECCEECcCCCCEEEEEECCE------EEEEECcCChHHCEEEEEEEEeCCcEEEEEEE
Confidence            5699999888      89999999999988777765543332      68999999999999999999999998888888


Q ss_pred             EEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670           88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus        88 l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      |.|.....++.+.      .......+.+|+++.|.|.+.|.|.+.+.|+|+|..+..+.++.+....     ....|.|
T Consensus       189 l~v~~~~~pp~~~------~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~-----~~~~L~i  257 (570)
T 3b43_A          189 LTLSEHEVPPFFD------LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE-----NTATLTV  257 (570)
T ss_dssp             EEEECCCCCCEEE------ECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEET-----TEEEEEE
T ss_pred             EEEcCCCCCCccc------cCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEEC-----CEEEEEE
Confidence            8776433111111      1122345779999999999999999999999999998776665543221     1238999


Q ss_pred             cCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCC-ceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670          168 NNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKP-RIIPNESGTLIQMKCKCSAKPRPEVKWFKADK  246 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  246 (540)
                      .+++.+|+|.|+|.|.|..|.....+.|.|..       +|.+.... ....+.+|+.+.|.|.+.|.|.+.+.|++++.
T Consensus       258 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~  330 (570)
T 3b43_A          258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET  330 (570)
T ss_dssp             SSBCGGGCEEEEEEEEETTEEEEEEEEECCBC-------CCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTE
T ss_pred             cccCcccCEEEEEEEECCCCcEEEEEEEEeec-------CCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCE
Confidence            99999999999999999999988888888875       56655433 23446789999999999999999999999999


Q ss_pred             EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC
Q psy670          247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG  326 (540)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g  326 (540)
                      .+.......+.....    ...|.|.+++.+|+|.|+|.|.|..|.......|.|..       +|.+...+....+.+|
T Consensus       331 ~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~P~~~~~~~~~~~~~G  399 (570)
T 3b43_A          331 EIQESSKFRMSFVES----VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKG  399 (570)
T ss_dssp             ECCCSSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC-------CCEECSCCCCEEECTT
T ss_pred             ECCCCCcEEEEEECC----EEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC-------CCeeecCCCceeecCC
Confidence            998776655543321    24799999999999999999999999988888888876       6777777777788899


Q ss_pred             CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       327 ~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.+.|.|.+.|.|.+.+.|+++|..+..+.++.+.  .++.  ..+|.|.++..+|+|.|+|.|.|..|.......|.|.
T Consensus       400 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~  475 (570)
T 3b43_A          400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM--SENF--LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK  475 (570)
T ss_dssp             CCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEE--EETT--EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEE--EcCC--EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec
Confidence            99999999999999999999999999877665443  2222  2379999999999999999999999999988888887


Q ss_pred             EEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCce
Q psy670          407 MVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSV  486 (540)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v  486 (540)
                      .                                              +|.+...+.+..+.+|+.+.|.|.+.|.|++++
T Consensus       476 ~----------------------------------------------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v  509 (570)
T 3b43_A          476 A----------------------------------------------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISV  509 (570)
T ss_dssp             C----------------------------------------------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCC
T ss_pred             c----------------------------------------------CCcccccCCCceecCCCeEEEEEEEecCCCCEE
Confidence            7                                              888888777888899999999999999999999


Q ss_pred             EEEecCeec-CCCCe---------EEEE---EEecCCeEEEEEEeeeeeee
Q psy670          487 TWMKEKNTV-KEDNK---------HVVH---IEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       487 ~W~~~~~~l-~~~~~---------~~~~---~~~~~~g~y~c~~~~~~~~~  524 (540)
                      +|+|++..+ ..+.+         ..+.   +...|.|.|+|.+.+.--..
T Consensus       510 ~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  560 (570)
T 3b43_A          510 AWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQ  560 (570)
T ss_dssp             EEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEE
T ss_pred             EEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEE
Confidence            999998554 33222         2333   33468999999998654443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.5e-47  Score=399.91  Aligned_cols=404  Identities=16%  Similarity=0.275  Sum_probs=307.6

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee--e
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS--T   85 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~--~   85 (540)
                      +.|.+.|.|.      +.++|+|+|..+...                 ..|.|.+++.+|+|.|+|.+.|..|....  .
T Consensus       223 l~C~~~g~p~------~~i~W~~~g~~i~~~-----------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~  279 (642)
T 1e07_A          223 LSCHAASNPP------AQYSWFVNGTFQQST-----------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTV  279 (642)
T ss_pred             EEEEcCCCCC------cEEEEEECCeEcccC-----------------CceEEecccccCCeEEEEEEEeCCCceEEeee
Confidence            6799999998      999999999987421                 36899999999999999999998876543  4


Q ss_pred             EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670           86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus        86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  165 (540)
                      +.|.|...+..+.+.       ......+..|+.+.|.|.+.+.| +.+.|+++|..+....+..+...       ...|
T Consensus       280 ~~v~v~~~~~~p~i~-------~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~-------~~~L  344 (642)
T 1e07_A          280 TTITVYAEPPKPFIT-------SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSND-------NRTL  344 (642)
T ss_pred             EEEEEEccCCCCEEE-------cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCC-------CCEE
Confidence            556665543222222       11223456788899999998876 69999999998876666554321       1289


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC
Q psy670          166 EINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA  244 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~  244 (540)
                      .|.++..+|+|.|+|.+.|..|.. +..+.|.|...+.      .+...+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus       345 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~  418 (642)
T 1e07_A          345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD------DPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID  418 (642)
T ss_pred             EEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC------CCeecCCceEecCCCcEEEEEEcCccCCCeEEEEEC
Confidence            999999999999999999998764 4567777775221      122234556678999999999999999999999999


Q ss_pred             CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEee
Q psy670          245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQ  324 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~  324 (540)
                      |..+...               ..|.|.+++.+|+|.|+|.|.|..|....+..+.|.....+  .+|.+. ......+.
T Consensus       419 g~~~~~~---------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~--~~p~i~-~~~~~~v~  480 (642)
T 1e07_A          419 GNIQQHT---------------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL--PKPSIS-SNNSKPVE  480 (642)
T ss_pred             CEEcCCC---------------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC--CCceEe-cCCceeec
Confidence            9876432               15889999999999999999999887655544444332211  134443 33446678


Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTL  403 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l  403 (540)
                      +|+.+.|.|.+. .|.+.+.|+++|..+....++.+.  .++.    .|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus       481 ~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~~~~~~~--~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l  553 (642)
T 1e07_A          481 DKDAVAFTCEPE-AQNTTYLWWVNGQSLPVSPRLQLS--NGNR----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTL  553 (642)
T ss_pred             CCCeEEEEEECC-CCCcEEEEEECCEeCCCCCcEEEc--CCCc----EEEEeecChhcCceEEEEeEcCCCCccCCCEEE
Confidence            999999999998 488899999999999876654432  2222    899999999999999999999988753 46788


Q ss_pred             EEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC
Q psy670          404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE  483 (540)
Q Consensus       404 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~  483 (540)
                      .|...                                             |+.+...+....+.+|+.++|.|.+.|.|+
T Consensus       554 ~V~~~---------------------------------------------p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~  588 (642)
T 1e07_A          554 DVLYG---------------------------------------------PDTPIISPPDSSYLSGANLNLSCHSASNPS  588 (642)
T ss_pred             EEEeC---------------------------------------------CCcceecCCceeEEcCCcEEEEEEeccCCC
Confidence            88751                                             333455566788899999999999999999


Q ss_pred             CceEEEecCeecCCCCeEEE-EEEecCCeEEEEEEeeeeeeee
Q psy670          484 PSVTWMKEKNTVKEDNKHVV-HIEQVKDVSMNFELWLGIVEKR  525 (540)
Q Consensus       484 ~~v~W~~~~~~l~~~~~~~~-~~~~~~~g~y~c~~~~~~~~~~  525 (540)
                      |.++|+|+|..+..+....+ .+...|.|.|+|.+.+......
T Consensus       589 p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  631 (642)
T 1e07_A          589 PQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRN  631 (642)
T ss_pred             CeEEEEECCEECccCceEEECcccccCCeEEEEEEEecccCcc
Confidence            99999999999987654333 4677899999999997655443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=7.2e-48  Score=413.53  Aligned_cols=418  Identities=21%  Similarity=0.364  Sum_probs=322.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      +.+.|+|+|..+..+.                ..|.|.+++.+|+|.|+|.+.|..+....++
T Consensus       362 ~l~C~~~g~p~------~~v~W~k~g~~~~~~~----------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  419 (816)
T 3dmk_A          362 VFTCQYTGNPI------KTVSWMKDGKAIGHSE----------------SVLRIESVKKEDKGMYQCFVRNDRESAEASA  419 (816)
T ss_dssp             EEEEEEEEECC------CEEEEEETTEECSCCS----------------SEEEESSCCGGGCEEEEEEEECSSCEEEECC
T ss_pred             EEEEEEeccCC------CEEEEEECCEECCCCC----------------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEE
Confidence            36799999888      8999999999886432                2799999999999999999999988777777


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .|.|.....++.+.      .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+..............+.|.
T Consensus       420 ~l~v~~~~~~p~i~------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~  493 (816)
T 3dmk_A          420 ELKLGGRFDPPVIR------QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLN  493 (816)
T ss_dssp             EEECCCSSCCCEEE------EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEE
T ss_pred             EEEEccccCCCceE------ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEE
Confidence            77765322121111      012234678999999999999999999999999999987777666544444444566899


Q ss_pred             EcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE
Q psy670          167 INNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK  246 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~  246 (540)
                      |.+++.+|+|.|+|.+.|..|.....+.|.|..       +|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       494 i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~  565 (816)
T 3dmk_A          494 ITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-------LPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR  565 (816)
T ss_dssp             ESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS-------SCEEC-CCCCEEEETTCCEEEECCEECSSEEEEEEEETTE
T ss_pred             EeeccccCCEEEEEEEEECCCeEEEEEEEEEec-------CCeeE-ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCe
Confidence            999999999999999999999988889999875       44433 3344567789999999999999989999999999


Q ss_pred             EeeccCceEEEEecCCCeEEEEEEEeCCC-CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEe-CCceEEe
Q psy670          247 LVKESSKIKIIVNEQDDTYEIICEITDPI-GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIE-KPKIRSE  323 (540)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~  323 (540)
                      .+.........   ..+    .|.|.++. .+|+|.|+|.|.|..|.. ...+.+.|...       |.+.. .+....+
T Consensus       566 ~l~~~~~~~~~---~~~----~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~-------p~~~~~~~~~~~~  631 (816)
T 3dmk_A          566 ALPINRKQKVF---PNG----TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL-------PRIIPFAFEEGPA  631 (816)
T ss_dssp             ESCCSTTEEEC---TTS----EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECC-------CCCBCCCCCSSCE
T ss_pred             EcccCCceEEe---cCC----eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecC-------Ccccccccccccc
Confidence            88765544332   111    68999998 589999999999998853 33455555542       22221 2233457


Q ss_pred             eCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          324 QGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      .+|+.+.|.|.+.+.+.+ .+.|+++|..+.............   ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus       632 ~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  708 (816)
T 3dmk_A          632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR---RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP  708 (816)
T ss_dssp             ESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETT---TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCC---CeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence            789999999999876554 999999999887655544332211   2348999999999999999999999999999999


Q ss_pred             EEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeec
Q psy670          403 LNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY  482 (540)
Q Consensus       403 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p  482 (540)
                      |.|..                                              +|.+...+....+.+|+.++|.|.+.|.|
T Consensus       709 l~V~~----------------------------------------------~P~~~~~~~~~~v~~G~~v~l~C~~~g~P  742 (816)
T 3dmk_A          709 LNVYV----------------------------------------------PPRWILEPTDKAFAQGSDAKVECKADGFP  742 (816)
T ss_dssp             ECEEE----------------------------------------------EEEEEECCCCEEEETTCCEEEECEEEEES
T ss_pred             EEEEe----------------------------------------------CCceeeecccceecCCCcEEEEEEEecCC
Confidence            99887                                              88888778888899999999999999999


Q ss_pred             CCceEEEecCeecCCC-------Ce--------EEEEEEecCCeEEEEEEeeeeee
Q psy670          483 EPSVTWMKEKNTVKED-------NK--------HVVHIEQVKDVSMNFELWLGIVE  523 (540)
Q Consensus       483 ~~~v~W~~~~~~l~~~-------~~--------~~~~~~~~~~g~y~c~~~~~~~~  523 (540)
                      +|.++|+|++..+...       ..        ....+...|.|.|+|.+.+.--+
T Consensus       743 ~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  798 (816)
T 3dmk_A          743 KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGS  798 (816)
T ss_dssp             CCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred             CCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCC
Confidence            9999999987544221       11        11135557899999999865443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.3e-46  Score=392.87  Aligned_cols=416  Identities=17%  Similarity=0.280  Sum_probs=308.3

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~   85 (540)
                      .+.|.+.| |.      +.+.|+|+|..+..+.++.+..  ++      .+|.|.+++.+|+|.|+|.+.|..+.. +..
T Consensus       130 ~l~C~~~~-p~------~~v~W~~~g~~l~~~~~~~~~~--~~------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~  194 (642)
T 1e07_A          130 AFTCEPET-QD------ATYLWWVNNQSLPVSPRLQLSN--GN------RTLTLFNVTRNDTASYKCETQNPVSARRSDS  194 (642)
T ss_pred             EEEEECCC-CC------eeEEEEECCeECCCCCceEEcC--CC------CEEEEeCCCcccCeeEEEEEecCCCCcccce
Confidence            36788888 66      8999999999998777766532  22      489999999999999999999988764 356


Q ss_pred             EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670           86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus        86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  165 (540)
                      +.|.|...+..+.+.        .....+.+|+.+.|.|.+.+.|.+.+.|+++|..+...                ..|
T Consensus       195 ~~l~V~~~p~~~~~~--------~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~----------------~~L  250 (642)
T 1e07_A          195 VILNVLYGPDAPTIS--------PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST----------------QEL  250 (642)
T ss_pred             EEEEEEeCCCCcEEe--------cCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC----------------Cce
Confidence            778887655333322        23446789999999999999999999999999877422                179


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCceeE--EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe
Q psy670          166 EINNPTKDDGGNYRCNACNSIGESN--ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK  243 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  243 (540)
                      .|.+++.+|+|.|+|.+.|..|...  ..+.|.|...+.    .|.+.. +....+..|+.+.|.|.+.+.| +.+.|++
T Consensus       251 ~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~----~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~  324 (642)
T 1e07_A          251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP----KPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWV  324 (642)
T ss_pred             EEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCC----CCEEEc-CCceeEecCCcEEEEEECCCCC-ccEEEEE
Confidence            9999999999999999999887653  345566654221    333332 3334455688899999999876 6899999


Q ss_pred             CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEE
Q psy670          244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRS  322 (540)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~  322 (540)
                      +|..+....+..+...  .    ..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|...+      +.....+....
T Consensus       325 ~g~~l~~~~~~~~~~~--~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p------~~~~~~~~~~~  392 (642)
T 1e07_A          325 NNQSLPVSPRLQLSND--N----RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP------DDPTISPSYTY  392 (642)
T ss_pred             CCccCCCcCCEEEeCC--C----CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCC------CCCeecCCceE
Confidence            9998866555444221  1    279999999999999999999988764 445677776532      12223445567


Q ss_pred             eeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      +.+|+.+.|.|.+.|.|.+.+.|+++|..+....               .|.|.++..+|+|.|+|.|.|..|....+..
T Consensus       393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~---------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~  457 (642)
T 1e07_A          393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ---------------ELFISNITEKNSGLYTCQANNSASGHSRTTV  457 (642)
T ss_pred             ecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc---------------eEEEccCChhhCeEEEEEEEcCCCCCcccce
Confidence            8899999999999999999999999998775321               6999999999999999999999987766554


Q ss_pred             EEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeec
Q psy670          403 LNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMY  482 (540)
Q Consensus       403 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p  482 (540)
                      +.|....                                         ...+|.|.. +....+.+|+.++|.|.+.+ |
T Consensus       458 ~~v~v~~-----------------------------------------~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~  494 (642)
T 1e07_A          458 KTITVSA-----------------------------------------ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-Q  494 (642)
T ss_pred             EEEEEec-----------------------------------------cCCCceEec-CCceeecCCCeEEEEEECCC-C
Confidence            4444310                                         011455544 34567889999999999984 7


Q ss_pred             CCceEEEecCeecCCCCeEE-------E---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670          483 EPSVTWMKEKNTVKEDNKHV-------V---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP  537 (540)
Q Consensus       483 ~~~v~W~~~~~~l~~~~~~~-------~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~  537 (540)
                      .+.++|+|+|..+..+.++.       +   .+...|.|.|+|.+.............+.+..+|
T Consensus       495 ~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p  559 (642)
T 1e07_A          495 NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP  559 (642)
T ss_pred             CcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCC
Confidence            88999999999887654322       2   3455789999999986544333333444444444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=7.6e-47  Score=384.82  Aligned_cols=446  Identities=14%  Similarity=0.184  Sum_probs=288.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCe--ecc------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGS--LLK------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK   72 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~--~l~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   72 (540)
                      .+.|.+.|.|.      +.+.|||++.  .+.            ...|+....  ++    ...+|+|.+++.+|+|.|+
T Consensus        19 ~L~C~~~~~~~------~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~----~~~~L~I~~v~~~D~G~Y~   86 (523)
T 2rcj_C           19 TISCTGTSSGS------ITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK--SG----TSASLAISGLEAEDESDYY   86 (523)
T ss_pred             EEEEEEeccCC------ceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec--CC----CEEEEEECCCChhhCEEEE
Confidence            36799998887      8999999852  211            123444221  11    2368999999999999999


Q ss_pred             EEEEccCcc---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCC
Q psy670           73 VIAKNKNGE---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDT  146 (540)
Q Consensus        73 C~~~~~~~~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~  146 (540)
                      |.+.|..|.   ....+.|.|...+ .++.+.      +......+.+|+.+.|.|.+.|.|++  .+.|+|+|..+..+
T Consensus        87 C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~------~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (523)
T 2rcj_C           87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVT------LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG  160 (523)
T ss_pred             EEEccCCCccccccCceEEEeccCCCcCCeEE------ecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc
Confidence            999997653   2345666664321 011110      11112344579999999999887654  89999999888654


Q ss_pred             CceEEE-EeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE
Q psy670          147 GRIKMS-KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI  225 (540)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~  225 (540)
                      ...... ....+.....+.|.|.++..+|+|.|+|.+.|..+.....+.+.+...   ...+|.+........+.+|+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~---~~~~P~v~~~~~~~~~~~G~~~  237 (523)
T 2rcj_C          161 VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA---STKGPSVFPLAPSSKSTSGGTA  237 (523)
T ss_pred             eEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC---CCcCCEEEecCCCcccccCCce
Confidence            322111 111122223357999999999999999999998876555544332211   1124555433333456789999


Q ss_pred             EEEEEeccc-CCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          226 QMKCKCSAK-PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       226 ~l~C~~~~~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      .|.|.+.+. |.+ .|.|++++..+..................+.|.|.++..+| |.|+|.|.|..|.......+.+..
T Consensus       238 ~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~  316 (523)
T 2rcj_C          238 ALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS  316 (523)
T ss_pred             EEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc
Confidence            999999885 777 89999999875432111111111222334589999999999 999999999988866665555433


Q ss_pred             ccCCCCCCCeE-EeCCceEE-eeCCCeEEEEEEEEccCC----CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEc
Q psy670          304 EAEPEGDPPTF-IEKPKIRS-EQGGKLVVMECKVKAKPM----PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVK  376 (540)
Q Consensus       304 ~~~~~~~~p~~-~~~~~~~~-~~~g~~v~l~C~~~~~p~----~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~  376 (540)
                             .|.+ +..+.... +.+|+.+.|.|.+.|.|+    +.|.|+++|..+............++. ...+.|.|.
T Consensus       317 -------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~  389 (523)
T 2rcj_C          317 -------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL  389 (523)
T ss_pred             -------CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEEC
Confidence                   2333 33343333 678999999999998653    489999999998765432221122222 233479999


Q ss_pred             CCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeece
Q psy670          377 DPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPV  456 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  456 (540)
                      .+..+|+|.|+|.|.|..+.......+.+..                                          ....+|.
T Consensus       390 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~------------------------------------------~~~~~P~  427 (523)
T 2rcj_C          390 HQNWLDGKEYKCKVSNKALPAPIEKTISKAK------------------------------------------GQPREPQ  427 (523)
T ss_pred             HHHhcCCCeEEEEEeCCCCCCceeEEEEccc------------------------------------------CCCCCCE
Confidence            9999999999999999877665444444210                                          0012565


Q ss_pred             eecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC----------eEE----EEEEe---cCCeEEEEEE
Q psy670          457 IREVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN----------KHV----VHIEQ---VKDVSMNFEL  517 (540)
Q Consensus       457 i~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~----------~~~----~~~~~---~~~g~y~c~~  517 (540)
                      +...+.......|+.++|.|.+.|.|++  .|+|+|||..+....          .+.    +.+..   .+.|.|+|.+
T Consensus       428 v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a  507 (523)
T 2rcj_C          428 VYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV  507 (523)
T ss_pred             EEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEE
Confidence            5433222222234459999999998766  999999999886321          111    12332   3478899988


Q ss_pred             eeeeee
Q psy670          518 WLGIVE  523 (540)
Q Consensus       518 ~~~~~~  523 (540)
                      ....+.
T Consensus       508 ~n~~l~  513 (523)
T 2rcj_C          508 MHEALH  513 (523)
T ss_pred             EcCCcC
Confidence            876554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=3.6e-47  Score=387.26  Aligned_cols=402  Identities=13%  Similarity=0.160  Sum_probs=287.8

Q ss_pred             eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670           25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA  104 (540)
Q Consensus        25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~  104 (540)
                      .+.|+|++.++.       .....       ++|+|.+++.+|+|.|+|.+.|  | .+.++.|.|..++. +.      
T Consensus        63 ~v~W~~~~~~~~-------~~~~~-------~~L~I~~~~~~D~G~Y~C~a~n--g-~~~~~~l~V~~p~~-~~------  118 (524)
T 2ec8_A           63 FVKWTFEILDET-------NENKQ-------NEWITEKAEATNTGKYTCTNKH--G-LSNSIYVFVRDPAK-LF------  118 (524)
T ss_dssp             EEEEEEESSSCC-------EEECS-------SEEEESSCCSTTCEEEEEEETT--S-CEEEEEEECCCSSC-SB------
T ss_pred             eEEEcCCCcccc-------ccCcc-------ceEEEcccchhhCEEEEEeecC--C-cceEEEEEECCCCc-cc------
Confidence            699999999772       11112       4899999999999999999999  4 36677777764431 11      


Q ss_pred             CCCCCCCccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEE
Q psy670          105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNA  182 (540)
Q Consensus       105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~  182 (540)
                        .......+.+|+.+.|.|.+.+.+.+.+.|++ +|..+..+.++.....     .   .|.|.+++.+|+| .|+|.+
T Consensus       119 --~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~-----~---~L~i~~~~~~d~G~~Y~C~a  188 (524)
T 2ec8_A          119 --LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPK-----A---GIMIKSVKRAYHRLCLHCSV  188 (524)
T ss_dssp             --CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETT-----T---EEEEESCCGGGTTCEEEEEE
T ss_pred             --ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCC-----c---cEEEeccchhhCCceEEEEE
Confidence              12234567899999999999887778999998 7887766555444321     1   7999999999999 999999


Q ss_pred             EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEe--eccCceEEEE
Q psy670          183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLV--KESSKIKIIV  258 (540)
Q Consensus       183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l--~~~~~~~~~~  258 (540)
                      .+..+.. +..+.|.|....   ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+  .......+. 
T Consensus       189 ~n~~~~~~s~~~~l~V~~~~---~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~-  264 (524)
T 2ec8_A          189 DQEGKSVLSEKFILKVRPAF---KAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH-  264 (524)
T ss_dssp             C----CCCCCCEECCEECCC---CSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC-
T ss_pred             EECCceEEEEEEEEEEEeCC---CCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc-
Confidence            9886654 346677765321   1377787777777889999999999999988876 9999999873  222211110 


Q ss_pred             ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC---ceEEeeCCCeEEEEEEE
Q psy670          259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP---KIRSEQGGKLVVMECKV  335 (540)
Q Consensus       259 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~~  335 (540)
                      ..........|.|.+++.+|+|.|+|.+.|..|.....+.|.|..       +|.+...+   ....+.+|+.+.|.|.+
T Consensus       265 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~  337 (524)
T 2ec8_A          265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-------KGFINIFPMINTTVFVNDGENVDLIVEY  337 (524)
T ss_dssp             SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-------SCEEEEEESSCSEEEECTTCCEEEEEEE
T ss_pred             cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-------cCceEeecCCCceEEEcCCCcEEEEEEE
Confidence            001223446899999999999999999999999888888888875       55554433   36778899999999999


Q ss_pred             EccCCCe-EEEEECCEEccCCCceEEEEEec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEE
Q psy670          336 KAKPMPE-IVWFHEGKELQQTDRISWNVTLK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKY  413 (540)
Q Consensus       336 ~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~  413 (540)
                      .|.|.+. +.|+++|..+............+ ......+|.|.+++.+|+|.|+|.|.|..|....++.|.|..      
T Consensus       338 ~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~------  411 (524)
T 2ec8_A          338 EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT------  411 (524)
T ss_dssp             EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE------
T ss_pred             eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec------
Confidence            9999998 99999999887654211111111 112455899999999999999999999999999999999887      


Q ss_pred             eeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCe
Q psy670          414 RVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN  493 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~  493 (540)
                                                              +|.|...+.   ..+|   +|.|.+.|.|.|+|+|++++.
T Consensus       412 ----------------------------------------~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~  445 (524)
T 2ec8_A          412 ----------------------------------------KPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPG  445 (524)
T ss_dssp             ----------------------------------------EEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC--
T ss_pred             ----------------------------------------CCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCC
Confidence                                                    666654332   3455   999999999999999999976


Q ss_pred             ecC-------------------CCCeEE----EEEE-ecCCeEEEEEEeeeeee
Q psy670          494 TVK-------------------EDNKHV----VHIE-QVKDVSMNFELWLGIVE  523 (540)
Q Consensus       494 ~l~-------------------~~~~~~----~~~~-~~~~g~y~c~~~~~~~~  523 (540)
                      .+.                   .+....    +.+. ..|.|.|+|.+.+.-..
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~  499 (524)
T 2ec8_A          446 TEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK  499 (524)
T ss_dssp             --------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCE
T ss_pred             cccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCc
Confidence            541                   111111    2222 37899999999864443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-47  Score=382.51  Aligned_cols=405  Identities=14%  Similarity=0.188  Sum_probs=275.7

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      ..+.|++++..+.....+..    ++ +  ...+|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus        67 ~L~c~~~~~~~------~~~~W~~~~~~l~~~~~~~~----~~-r--~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~  133 (527)
T 3qs9_E           67 TLQVLVDAPGN------ISCLWVFKHSSLNCQPHFDL----QN-R--GVVSMVILKMTETQAGEYLLFIQSEATNYTILF  133 (527)
T ss_dssp             EEEEECSCCSS------CEEEEEETTEEECCCCBC------------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred             EEEEEEecCCc------eeEEEEecCCccCcccccCC----Cc-c--eEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence            35688877776      89999999998865555532    11 1  235799999999999999999999887666555


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .|.|.  +..+.        .+..+.....|+.+.|.|.+.|+|.|.+.|++++..+........         ......
T Consensus       134 ~v~v~--~~~~~--------~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~---------~~~~~~  194 (527)
T 3qs9_E          134 TVSIR--NTLLY--------TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP---------AVVKKE  194 (527)
T ss_dssp             EEEEC---------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC----------------------CEEEC
T ss_pred             EEEEC--Cceee--------ccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCC---------cEEEEe
Confidence            55554  21111        112334456678889999999999999999998776532110000         000222


Q ss_pred             EcCCCCCCCeEEEEEEEcCCceeEEE-EEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeC
Q psy670          167 INNPTKDDGGNYRCNACNSIGESNAN-IALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKA  244 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~  244 (540)
                      ...+...|+|.|+|.|.|..|..... +.|.|..       .|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus       195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~  265 (527)
T 3qs9_E          195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE  265 (527)
T ss_dssp             CSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECS
T ss_pred             eeeccccCCEEEEEEEEeCCCcccceEEEEEEec-------cCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEEC
Confidence            33345789999999999999886544 6777764       3333  44567788999999999996 899999999999


Q ss_pred             CEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC--ce
Q psy670          245 DKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP--KI  320 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~~  320 (540)
                      +..+..............  .....+|.|.+++.+|+|.|+|.|.|.   ....+.|.|..       +|.+...+  ..
T Consensus       266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~-------~p~i~~~~~~~~  335 (527)
T 3qs9_E          266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-------KGFINATNSSED  335 (527)
T ss_dssp             SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC---------CEEECCCSCCE
T ss_pred             CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc-------cCccccccCccc
Confidence            988766543322221111  122346999999999999999999987   55666677755       44444333  33


Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+.+|+.+.|.|.+.|.|.|.|.|+++|..+.......    .++.    .|.|.+++.+|+|.|+|.|.|..|....+
T Consensus       336 ~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~----~L~I~~v~~~D~G~YtC~A~N~~g~~~~~  407 (527)
T 3qs9_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKM  407 (527)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSS----EEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCc----EEEEecCCcccCEEEEEEEEeCCCcEEEE
Confidence            567789999999999999999999999999987654421    1222    79999999999999999999999999988


Q ss_pred             EEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEee
Q psy670          401 LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMS  480 (540)
Q Consensus       401 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g  480 (540)
                      +.|.|..                                              +|.|...+.      |  ..|.|.+.|
T Consensus       408 ~~L~V~~----------------------------------------------~P~i~~~~~------~--~~l~C~a~g  433 (527)
T 3qs9_E          408 FTLNIRR----------------------------------------------KPQVLAEAS------A--SQASCFSDG  433 (527)
T ss_dssp             EEEC--C----------------------------------------------CCEEEECCC------C--E---EEEEC
T ss_pred             EEEEEec----------------------------------------------CCeEEEeCC------C--CEEEEEEEE
Confidence            8888887                                              777765442      2  357999999


Q ss_pred             ecCCceEEEecCeecCCC-------------------C-eE--EEEE-EecCCeEEEEEEeeeeeee
Q psy670          481 MYEPSVTWMKEKNTVKED-------------------N-KH--VVHI-EQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       481 ~p~~~v~W~~~~~~l~~~-------------------~-~~--~~~~-~~~~~g~y~c~~~~~~~~~  524 (540)
                      .|.|.|+|++++......                   . ..  .+.+ ...|.|.|+|.+.+.-...
T Consensus       434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~  500 (527)
T 3qs9_E          434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS  500 (527)
T ss_dssp             SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEE
T ss_pred             EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCc
Confidence            999999999876543110                   0 01  1111 2357999999998654433

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5.4e-46  Score=398.99  Aligned_cols=424  Identities=20%  Similarity=0.328  Sum_probs=319.5

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecc------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLK------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      +.|.+.|.|.      +.+.|+|++....      ...+...   ..       .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus       268 L~C~~~g~p~------p~v~W~k~~~~~~~~~~~~~~~~~~~---~~-------~~L~i~~v~~~D~G~Y~C~a~n~~g~  331 (816)
T 3dmk_A          268 LLCPAQGYPV------PVFRWYKFIEGTTRKQAVVLNDRVKQ---VS-------GTLIIKDAVVEDSGKYLCVVNNSVGG  331 (816)
T ss_dssp             ECCCCBCSSC------CEEEEEEECTTSSCEEECCCSSSEEE---ET-------TEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEEEeeecCC------CeEEEEeCCCCCccCcceecCCceEe---cc-------ceEEECCCCHhHCEEEEEEEEcCCCc
Confidence            5699999988      9999999754321      2222211   12       38999999999999999999999998


Q ss_pred             eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceE
Q psy670           82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY  161 (540)
Q Consensus        82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  161 (540)
                      .+..+.|.|..++ .+.+        ......+.+|+++.|.|.+.+.|.+.+.|+++|..+.....             
T Consensus       332 ~~~~~~l~V~~~~-~~~~--------~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~-------------  389 (816)
T 3dmk_A          332 ESVETVLTVTAPL-SAKI--------DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-------------  389 (816)
T ss_dssp             EEEEEEEEECEEE-EEEE--------ESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS-------------
T ss_pred             eEEEEEEEEcCCC-ceee--------CCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC-------------
Confidence            8778888887543 2211        12245678999999999999999999999999998864321             


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEE
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKW  241 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W  241 (540)
                        .|.|.+++.+|+|.|+|.+.|..+.....+.+.|....    .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus       390 --~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W  463 (816)
T 3dmk_A          390 --VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF----DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW  463 (816)
T ss_dssp             --EEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSS----CCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEE
T ss_pred             --EEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcccc----CCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEE
Confidence              79999999999999999999999887777777775322    266676666677788999999999999999999999


Q ss_pred             EeCCEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCce
Q psy670          242 FKADKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKI  320 (540)
Q Consensus       242 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~  320 (540)
                      ++++..+........... ...+...+.|.|.+++.+|+|.|+|.+.|..|.......+.|..       +|. +..+..
T Consensus       464 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~-~~~~~~  535 (816)
T 3dmk_A          464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-------LPY-IRQMEK  535 (816)
T ss_dssp             EETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECS-------SCE-ECCCCC
T ss_pred             EECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEec-------CCe-eEccCC
Confidence            999999877665544321 12334456799999999999999999999999888888888765       443 334445


Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeee-E
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGEL-N  398 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~-~  398 (540)
                      ..+..|+.+.|.|.+.+.|.+.+.|+++|..+........  . .++    +|.|.++. .+|+|.|+|.|.|..|.. .
T Consensus       536 ~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~--~-~~~----~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~  608 (816)
T 3dmk_A          536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV--F-PNG----TLIIENVERNSDQATYTCVAKNQEGYSAR  608 (816)
T ss_dssp             EEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEE--C-TTS----EEEESSCCHHHHCEEEEEEEEESSSCEEE
T ss_pred             eEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEE--e-cCC----eEEEEecCccccCEEEEEEEEECCCceee
Confidence            6788999999999999999999999999999876655332  1 222    79999998 589999999999998853 4


Q ss_pred             EEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEecCCCeEEEEEE
Q psy670          399 ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTISKKKTVVIECK  477 (540)
Q Consensus       399 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~~g~~~~l~C~  477 (540)
                      ..+.+.|..                                              +|.+.. .+....+.+|+.++|.|.
T Consensus       609 ~~~~v~v~~----------------------------------------------~p~~~~~~~~~~~~~~G~~v~L~C~  642 (816)
T 3dmk_A          609 GSLEVQVMV----------------------------------------------LPRIIPFAFEEGPAQVGQYLTLHCS  642 (816)
T ss_dssp             EEEEEEEEC----------------------------------------------CCCCBCCCCCSSCEESSCEEEEEEB
T ss_pred             eeEEEEEec----------------------------------------------CCccccccccccccCCCCeEEEEEE
Confidence            456666655                                              444432 223445778999999999


Q ss_pred             EeeecCC-ceEEEecCeecCCCC----------eEEEE---EEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670          478 VMSMYEP-SVTWMKEKNTVKEDN----------KHVVH---IEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP  537 (540)
Q Consensus       478 v~g~p~~-~v~W~~~~~~l~~~~----------~~~~~---~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~  537 (540)
                      +.+.|++ .++|+++|..+..+.          ...+.   +...|.|.|+|.+........ ....+.+...|
T Consensus       643 ~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~l~V~~~P  715 (816)
T 3dmk_A          643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ-FTTPLNVYVPP  715 (816)
T ss_dssp             CCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEEEECEEEEE
T ss_pred             EeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEE-EEEEEEEEeCC
Confidence            9876665 999999999885331          22233   445689999999986433332 23344444444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=9.4e-45  Score=374.82  Aligned_cols=429  Identities=17%  Similarity=0.227  Sum_probs=298.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecc--------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK--------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK   72 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   72 (540)
                      .+.|.+.|.|.   +..+.+.|+|++..+.              ...|+.+....++    ...+|+|.+++.+|+|.|+
T Consensus        19 ~L~C~~~~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----g~~~L~I~~v~~~D~G~Y~   91 (585)
T 2ocw_A           19 SITCYYPPTSV---NRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN----GTFVVNIAQLSQDDSGRYK   91 (585)
T ss_pred             EEEEeCCCCcC---CCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCC----CEEEEEECCCCcccCEEEE
Confidence            36699998865   1224899999986431              1234443322121    2468999999999999999


Q ss_pred             EEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCCceEEEeCCEeec----C--
Q psy670           73 VIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIE----D--  145 (540)
Q Consensus        73 C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~----~--  145 (540)
                      |.+.|..+..+..+.|.|...+ .+.        .......+.+|+.+.|.|.+.+. +.+.+.|+|++....    .  
T Consensus        92 C~~~n~~~~~~~~~~l~V~~~p-~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           92 CGLGINSRGLSFDVSLEVSQGP-GLL--------NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             EEcccCCCCceEEEEEEEecCc-ccc--------CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            9999988877788888887654 111        12334568899999999999755 456899999875321    1  


Q ss_pred             -------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee
Q psy670          146 -------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP  218 (540)
Q Consensus       146 -------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~  218 (540)
                             ..+..+...  +.....++|.|.+++.+|+|.|+|.+.|..+.....+.|.|...      +      +....
T Consensus       163 ~~~~~~~~~r~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~------~------p~~~~  228 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQ--GTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP------E------PELVY  228 (585)
T ss_pred             cccCccccCcEEEEec--cCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC------C------CceeE
Confidence                   123333221  22233458999999999999999999999888888888888741      1      23445


Q ss_pred             cCCCCeEEEEEEecccC-C-CeEEEE-eCCE---Eeec---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          219 NESGTLIQMKCKCSAKP-R-PEVKWF-KADK---LVKE---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~p-~-~~v~W~-~~~~---~l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      +.+|+.+.|.|.+.+.+ . +.+.|+ +++.   .+..         ..+..+  ..........|.|.+++.+|+|.|+
T Consensus       229 ~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~L~i~~v~~~d~G~Y~  306 (585)
T 2ocw_A          229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL--NPQDKDGSFSVVITGLRKEDAGRYL  306 (585)
T ss_pred             EcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEe--eccCCCcEEEEEEccCChhhCEEEE
Confidence            67899999999984422 2 678897 7773   2211         111111  1111122237999999999999999


Q ss_pred             EEEEcCCCCee----eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE----EEEE--CCE--E
Q psy670          284 CNVKNEFGESN----ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI----VWFH--EGK--E  351 (540)
Q Consensus       284 C~~~~~~~~~~----~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i----~W~~--~~~--~  351 (540)
                      |.|.|..+...    ..+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+    .|++  +|.  .
T Consensus       307 C~a~n~g~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~  379 (585)
T 2ocw_A          307 CGAHSDGQLQEGSPIQAWQLFVNE-------ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPL  379 (585)
T ss_pred             EEEEcCCCccccCceeeEEEEEec-------ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCce
Confidence            99999533321    666777765       455555667778889999999999999999876    7999  876  4


Q ss_pred             ccCCCc-------eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeee
Q psy670          352 LQQTDR-------ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK  424 (540)
Q Consensus       352 ~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  424 (540)
                      +.....       .+..+..+......+|.|.+++.+|+|.|+|.| |..|....++.|.|...                
T Consensus       380 l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~----------------  442 (585)
T 2ocw_A          380 LVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG----------------  442 (585)
T ss_pred             eeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC----------------
Confidence            432111       111122111112236999999999999999999 88888888888888751                


Q ss_pred             eeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEe----eecCCceEEEecCeecCCCC-
Q psy670          425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVM----SMYEPSVTWMKEKNTVKEDN-  499 (540)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~----g~p~~~v~W~~~~~~l~~~~-  499 (540)
                                                   +|.+. .+....+.+|+.++|.|.+.    |.|.+.|+|+|+|..+..+. 
T Consensus       443 -----------------------------~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~  492 (585)
T 2ocw_A          443 -----------------------------EPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD  492 (585)
T ss_pred             -----------------------------ccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccC
Confidence                                         33333 36677899999999999997    67888999999998764321 


Q ss_pred             ---------------eEEE---EEEecCCeEEEEEEeeee
Q psy670          500 ---------------KHVV---HIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       500 ---------------~~~~---~~~~~~~g~y~c~~~~~~  521 (540)
                                     ...+   .+...|.|.|+|.+.+..
T Consensus       493 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  532 (585)
T 2ocw_A          493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH  532 (585)
T ss_pred             CCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence                           1123   345578999999998754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=2.9e-45  Score=366.04  Aligned_cols=395  Identities=15%  Similarity=0.189  Sum_probs=278.1

Q ss_pred             ccceeeeCcceeEEeeccee-----eeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            7 LKSYTLEGEPTKQIEANFQM-----NMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~-----~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      .+.|.+.| |.      |.+     .|+|++..+... ++              ..|.|.+++. |+| |+|.+.+..+.
T Consensus        18 ~L~C~~~g-p~------p~~~~~~~~w~k~~~~~~~~-~~--------------~~l~i~~v~~-d~g-Y~C~a~~~~~~   73 (450)
T 1z7z_I           18 LVTCSTSC-DQ------PMLLGIETPLPKKELLLPGN-NR--------------KVYELSNVQE-DSQ-PMCYSNCPDGQ   73 (450)
T ss_dssp             EEEEECCS-SC------CCEEEECSSSCEEECCSSTT-TE--------------EEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred             EEEEEccC-CC------cccccccceeeecceEecCC-Cc--------------eEEEEEeccc-CCe-eEEEEeCCCCc
Confidence            36799999 77      788     999998865421 11              3788999987 999 99999877666


Q ss_pred             eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecCCCceEEEEeecCc
Q psy670           82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIEDTGRIKMSKKSIGK  158 (540)
Q Consensus        82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~~  158 (540)
                      .+..+.|.|...|..+.+        ...+..+.+|+.+.|.|.+.+.|.+   .|.|+|++..+......        .
T Consensus        74 ~~~~~~l~V~~~P~~~~~--------~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--------~  137 (450)
T 1z7z_I           74 STAKTFLTVYWTPERVEL--------APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------G  137 (450)
T ss_dssp             EEEECEEEEEBCCSEEEE--------CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--------T
T ss_pred             ceeEEEEEEEeCCCccee--------cCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--------c
Confidence            677788888765422211        1234568899999999999998887   89999999887543211        1


Q ss_pred             ceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE--------EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE
Q psy670          159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESN--------ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK  230 (540)
Q Consensus       159 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~  230 (540)
                      ......|.|.+++.+|+|.|+|.+.|..|...        ....+.|...+   ..+|.+...   ..+.+|+.+.|.|.
T Consensus       138 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~---~~~p~~~~~---~~v~~G~~v~l~C~  211 (450)
T 1z7z_I          138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP---ATPPQLVSP---RVLEVDTQGTVVCS  211 (450)
T ss_dssp             TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCC---SSCCEEECC---SEEETTSEEEEEEE
T ss_pred             cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccC---CCCCEecCc---eeEEeCCcEEEEEE
Confidence            22234899999999999999999998866321        23344444321   113333221   56778999999999


Q ss_pred             eccc-C--CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcE--EEEEEEEcCCCCeeeeEEEEEeecc
Q psy670          231 CSAK-P--RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG--TYRCNVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       231 ~~~~-p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      +.+. |  .+.+.|++++..+...    ....  .......+.+ +++.+|+|  .|+|.+.|..|.......|.|...+
T Consensus       212 ~~g~~P~~~~~~~W~~~~~~~~~~----~~~~--~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~  284 (450)
T 1z7z_I          212 LDGLFPVSEAQVHLALGDQRLNPT----VTYG--NDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP  284 (450)
T ss_dssp             EESCTTGGGCEEEEEETTEECCCE----EEEE--TTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             eeCCCCCCceEEEEeCCCEeCCce----EEec--CCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC
Confidence            9997 7  7899999999887651    1111  1222223333 77899999  9999999998888888888887643


Q ss_pred             CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          306 EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       306 ~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                           +|.+...  ...+.+|+.++|.|.+.  |.+.+.|  +|..+.....            ...|.|..+..+|+|.
T Consensus       285 -----~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~~------------~~~L~i~~~~~~d~G~  341 (450)
T 1z7z_I          285 -----APNVILT--KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------------RAQLLLKATPEDNGRS  341 (450)
T ss_dssp             -----CCEEEES--CSEEETTCEEEEEEEC--------------------CC------------CCCEEEECCGGGTTCE
T ss_pred             -----CCeEecC--CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCCc------------eEEEEEecCcccCCce
Confidence                 3555433  34788999999999997  8889999  7766622111            1179999999999999


Q ss_pred             EEEEEEcCCe----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC-
Q psy670          386 YKCNIKNFHG----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV-  460 (540)
Q Consensus       386 Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-  460 (540)
                      |+|.|.|..+    ....++.|.|..                                              +|.+... 
T Consensus       342 Y~C~a~n~~~g~~~~~~~~~~l~V~~----------------------------------------------~P~~~~~~  375 (450)
T 1z7z_I          342 FSCSATLEVAGQLIHKNQTRELRVLY----------------------------------------------GPRLDERD  375 (450)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECEEEE----------------------------------------------EEECCSTT
T ss_pred             EEEEEEcCCCCcccccceeEEEEEec----------------------------------------------CCceeecc
Confidence            9999997654    334667777776                                              6666654 


Q ss_pred             -CcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeee
Q psy670          461 -PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       461 -~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~  524 (540)
                       |....+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.. .+.+...|.|.|+|.+.+.-.+.
T Consensus       376 ~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~-~~~v~~~d~G~Y~C~a~N~~G~~  439 (450)
T 1z7z_I          376 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-SVTVTRDLEGTYLCRARSTQGEV  439 (450)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-CEECCGGGCEEEEEEEEETTEEE
T ss_pred             CCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC-eEeEehhhCeEEEEEEEeCCCce
Confidence             3678899999999999999999999999999985544433 23678899999999999764443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=6e-43  Score=343.41  Aligned_cols=381  Identities=12%  Similarity=0.127  Sum_probs=230.4

Q ss_pred             ccCCCeeEEEEEEccCcceee-eEEE---EEeecCCccccCC---CCCCCCCCCCccccCCCeEEEEEEEeecCCCceEE
Q psy670           64 QKSDSGEYKVIAKNKNGEGSS-TVNL---NFSEEDGKLKVPG---GKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIW  136 (540)
Q Consensus        64 ~~~D~G~Y~C~~~~~~~~~~~-~~~l---~v~~~~~~~~i~~---~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W  136 (540)
                      ...|.|.|+|.+.+..+..++ .+..   .+...+..+....   .....+....+.+.+|+++.|.|.+.+.|.+.+.|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W   82 (423)
T 3qs7_E            3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW   82 (423)
T ss_dssp             -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred             ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence            356899999999876443321 1111   1111221222111   11122223356789999999999999999999999


Q ss_pred             EeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCce
Q psy670          137 YQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRI  216 (540)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~  216 (540)
                      ++++..+........      ......+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..       +|.+.. ...
T Consensus        83 ~~~~~~l~~~~~~~~------~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-------~p~~~~-~~p  148 (423)
T 3qs7_E           83 VFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-------TLLYTL-RRP  148 (423)
T ss_dssp             EETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC------------CE-EEE
T ss_pred             EECCCccCccceecc------ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEec-------Cccccc-cCC
Confidence            999887754322211      122234799999999999999999999999888888888874       333221 112


Q ss_pred             eecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee-
Q psy670          217 IPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA-  295 (540)
Q Consensus       217 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-  295 (540)
                      .....|+.+.|.|.+.|.|.|.|+|++++..+........     .........+   ...|+|.|+|.|.|..|.... 
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~-----~~~~~~~~~l---~~~d~G~Y~C~A~N~~G~~~~~  220 (423)
T 3qs7_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP-----AVVKKEEKVL---HELFGTDIRCCARNELGRECTR  220 (423)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC------------------CEEECCSEE---CCCCSSCEEEEEECSSCEEEEE
T ss_pred             cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccccc-----ccccccceEE---ecccCeEEEEEEEcCCCCccee
Confidence            2234577788999999999999999998875532110000     0000000111   567999999999999887543 


Q ss_pred             eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecC--CeeEEE
Q psy670          296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKG--DKYHIR  372 (540)
Q Consensus       296 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~  372 (540)
                      .+.|.|..  .     |.+  .+....+.+|+.+.|.|.+.| .|.+.|.|+++|..+.....+.......+  .....+
T Consensus       221 ~~~l~V~~--~-----p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~  291 (423)
T 3qs7_E          221 LFTIDLNQ--T-----PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF  291 (423)
T ss_dssp             CEEEESSS--C-----CCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEE
T ss_pred             eEEEEEec--C-----Ccc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEE
Confidence            24444433  1     111  233567889999999999998 67799999999988765433222111111  112237


Q ss_pred             EEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeee
Q psy670          373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLS  452 (540)
Q Consensus       373 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (540)
                      |.|.+++.+|+|.|+|.|.|.   ...++.|.|..                                             
T Consensus       292 L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~---------------------------------------------  323 (423)
T 3qs7_E          292 AFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE---------------------------------------------  323 (423)
T ss_dssp             EEESSCCTTTCEEEEEEETTE---EEEEEEEEEES---------------------------------------------
T ss_pred             EEEeecCHHHCEEEEEEEecC---CCceEEEEEEe---------------------------------------------
Confidence            999999999999999999997   66777788876                                             


Q ss_pred             eeceeecCC--cEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-----e-EE--EEEEecCCeEEEEEEeeeee
Q psy670          453 VVPVIREVP--KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN-----K-HV--VHIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       453 ~~p~i~~~~--~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~-----~-~~--~~~~~~~~g~y~c~~~~~~~  522 (540)
                       +|.+...+  ....+.+|+.+.|.|.+.|.|+|.|+|+|+|..|..+.     . ..  ......|.|.|+|.+.+...
T Consensus       324 -~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G  402 (423)
T 3qs7_E          324 -KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA  402 (423)
T ss_dssp             -SCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE
T ss_pred             -CCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCc
Confidence             55554433  45677889999999999999999999999999996542     2 22  34455789999999987655


Q ss_pred             ee
Q psy670          523 EK  524 (540)
Q Consensus       523 ~~  524 (540)
                      +.
T Consensus       403 ~~  404 (423)
T 3qs7_E          403 QF  404 (423)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=7.3e-43  Score=340.60  Aligned_cols=349  Identities=23%  Similarity=0.396  Sum_probs=257.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccc-ccCCCeeEEEEEEccCccee-e
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNV-QKSDSGEYKVIAKNKNGEGS-S   84 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~~~~~~~~~~-~   84 (540)
                      .++|.+.|.|.      |.|+|+|||.++..+..+++... ++       +|.|.+. +.+|+|.|+|.|.|..|... .
T Consensus        27 ~L~C~~~g~P~------p~i~W~k~g~~l~~~~~~~~~~~-~g-------~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~   92 (384)
T 3kld_A           27 KLSCEVKGNPK------PHIRWKLNGTDVDIGMDFRYSVV-DG-------SLLINNPNKTQDAGTYQCIATNSFGTIVSR   92 (384)
T ss_dssp             EECCEEEEESC------CEEEEEETTEECCC----CEEEE-TT-------EEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             EEEeEecCCCC------CEEEEEECCEECcCCCCccEEEE-CC-------EEEEcCCCCcccCEEEEEEEEcCcccEEec
Confidence            47899999998      99999999999976655555443 33       5667665 88999999999999988653 3


Q ss_pred             eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEE
Q psy670           85 TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL  163 (540)
Q Consensus        85 ~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (540)
                      .+.+.+...+ .+.       ........+.+|+.+.|.|... +.|.+.+.|++++..+....+.....    ...   
T Consensus        93 ~~~l~v~~~~-~~~-------~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~----~~~---  157 (384)
T 3kld_A           93 EAKLQFAYLE-NFK-------TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ----ETG---  157 (384)
T ss_dssp             CEEEEEEEEC-CCS-------CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECT----TTC---
T ss_pred             ceEEEEeccc-ccc-------cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEc----CCC---
Confidence            5566654432 111       1112345688999999999763 55778999999998875444432211    111   


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCceeEE---EEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecccCCCeE
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGESNA---NIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAKPRPEV  239 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  239 (540)
                      .|.|.+++.+|+|.|+|.+.|..+....   ...+.+..........|.+ ...+....+.+|+.+.|.|.+.+.|.+.+
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence            6999999999999999999998764321   1122222100000112333 23355667788999999999999999999


Q ss_pred             EEEeCCE-EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC
Q psy670          240 KWFKADK-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP  318 (540)
Q Consensus       240 ~W~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~  318 (540)
                      .|++++. .+.....  .  ....    ..|.|.+++.+|+|.|+|.|.|..|.......|.|..       +|.+...+
T Consensus       238 ~W~k~~~~~~~~~~~--~--~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~-------~P~~~~~~  302 (384)
T 3kld_A          238 LWRRADGKPIARKAR--R--HKSN----GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA-------QPNWVQII  302 (384)
T ss_dssp             EEEETTCCCCCTTCE--E--CTTS----CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEECC
T ss_pred             EEEeCCCccccccce--e--cCCC----cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec-------CCccccCC
Confidence            9999544 4432211  1  1111    2699999999999999999999999888888888876       66777777


Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ....+..|+.+.|.|.+.|.|.|.|.|+++|..+....++.+    .++    +|.|..+..+|+|.|+|.|.|..|...
T Consensus       303 ~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~----~~~----~L~i~~v~~~D~G~Y~C~A~N~~G~~~  374 (384)
T 3kld_A          303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQG----TLNITIVNLSDAGMYQCVAENKHGVIF  374 (384)
T ss_dssp             CCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE----ETT----EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE----eCC----EEEEeecChhhCEEEEEEEEeCCceEE
Confidence            788899999999999999999999999999999987666543    122    799999999999999999999999999


Q ss_pred             EEEEEEEEE
Q psy670          399 ANLTLNIEM  407 (540)
Q Consensus       399 ~~~~l~V~~  407 (540)
                      .++.|.|..
T Consensus       375 ~~a~L~V~~  383 (384)
T 3kld_A          375 SSAELSVIA  383 (384)
T ss_dssp             EEEEEEEC-
T ss_pred             eceEEEEec
Confidence            999998853

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.7e-42  Score=341.16  Aligned_cols=354  Identities=22%  Similarity=0.374  Sum_probs=265.1

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEc----ccccCCCeeEEEEEEccCcce
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIK----NVQKSDSGEYKVIAKNKNGEG   82 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~D~G~Y~C~~~~~~~~~   82 (540)
                      .+.|.+.|.|.      +.|.|+|+|..+......++.....+      .+|.|.    +++.+|+|.|+|.+.|..|..
T Consensus        36 ~l~C~~~g~p~------~~v~W~k~g~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~  103 (404)
T 3p3y_A           36 LIECEAKGNPA------PSFHWTRNSRFFNIAKDPRVSMRRRS------GTLVIDFRSGGRPEEYEGEYQCFARNKFGTA  103 (404)
T ss_dssp             CCCEEECCSSC------CEEEEEETTEECCGGGCSSCBCCSSS------CCCBCCCTTTCCTTSSCEEEEEEEECSSCEE
T ss_pred             EEEEEecCCCC------CeEEEEECCEEeeeecCCcceEecCC------ceEEEEeccCCCCccCCEEEEEEEEcCCCeE
Confidence            46799999988      99999999998865433333322222      355554    889999999999999998876


Q ss_pred             e-eeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEe-ecCCCceEEEEeecCcc
Q psy670           83 S-STVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKV-IEDTGRIKMSKKSIGKD  159 (540)
Q Consensus        83 ~-~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~  159 (540)
                      . ..+.|.|...+..+        .....+..+.+|+.+.|.|.+ .+.|.+.+.|++++.. +....+.....     +
T Consensus       104 ~s~~~~l~V~~~p~~~--------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~  170 (404)
T 3p3y_A          104 LSNRIRLQVSKSPLWP--------KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH-----N  170 (404)
T ss_dssp             EEEEEEEEECCCCCCC--------CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECT-----T
T ss_pred             eeeeEEEEEeccCccc--------cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcC-----C
Confidence            3 56777776544111        122344678899999999999 7889999999998744 33333333221     1


Q ss_pred             eEEEEEEEcCCCCCC-CeEEEEEEEcCCcee---EEEEEEEEecCcCCCCCCCeeccCC---ceeecCCCCeEEEEEEec
Q psy670          160 TYLLRLEINNPTKDD-GGNYRCNACNSIGES---NANIALNFQGGENGAGFAPSFIEKP---RIIPNESGTLIQMKCKCS  232 (540)
Q Consensus       160 ~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~  232 (540)
                      .   .|.|.++..+| +|.|+|.+.+..+..   ...+.+.+.........+|.+....   ....+.+|+.+.|.|.+.
T Consensus       171 ~---~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~  247 (404)
T 3p3y_A          171 G---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS  247 (404)
T ss_dssp             S---CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC
T ss_pred             C---cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC
Confidence            1   69999999999 699999999887653   2235556654332222344443322   345677899999999999


Q ss_pred             ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCC
Q psy670          233 AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP  312 (540)
Q Consensus       233 ~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p  312 (540)
                      +.|.+.+.|++++..+...... ...  ..    ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|..       +|
T Consensus       248 g~p~~~v~W~~~~~~~~~~~~~-~~~--~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p  313 (404)
T 3p3y_A          248 GVPTPDIAWYKKGGDLPSDKAK-FEN--FN----KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------AP  313 (404)
T ss_dssp             CSSCCEEEEEETTBCCCTTTEE-EEG--GG----TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-------EE
T ss_pred             CCCCCcEEEEECCEECCCCccc-ccc--cC----ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-------CC
Confidence            9999999999999887654431 111  11    2799999999999999999999999888888888877       66


Q ss_pred             eEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      .+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......... ..+.    +|.|.++..+|+|.|+|.|.|
T Consensus       314 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~-~~~~----~L~i~~v~~~d~G~Y~C~a~N  388 (404)
T 3p3y_A          314 YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE-VAGD----TIIFRDTQISSRAVYQCNTSN  388 (404)
T ss_dssp             EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEE-EETT----EEEESSCCSSCCCEEEEEEEE
T ss_pred             eeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEE-ecCC----EEEEeecCHHHCEEEEEEEEe
Confidence            77777877889999999999999999999999999999987654211111 1222    799999999999999999999


Q ss_pred             CCeeeEEEEEEEEEE
Q psy670          393 FHGELNANLTLNIEM  407 (540)
Q Consensus       393 ~~g~~~~~~~l~V~~  407 (540)
                      ..|....++.|.|.+
T Consensus       389 ~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          389 EHGYLLANAFVSVLD  403 (404)
T ss_dssp             TTEEEEEEEEEEEC-
T ss_pred             CCCcEEEEEEEEEEe
Confidence            999999999998864

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=1.4e-45  Score=393.87  Aligned_cols=444  Identities=18%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecC--ccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQD--QSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      +.|.+.|.+.    +.+.+.|++++..+.............  .......++|.|.+++.+|+|.|+|.+.|..+..+..
T Consensus       244 L~C~~~~~~~----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  319 (772)
T 3v2a_R          244 LNCTARTELN----VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS  319 (772)
T ss_dssp             EEEEEEECTT----CCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEE
T ss_pred             EEEEEecCCC----CceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEE
Confidence            5688887432    237899999999876543332211100  0122355799999999999999999999998887888


Q ss_pred             EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEE
Q psy670           86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus        86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  165 (540)
                      +.|.|...+ .+.+..     .......+.+|+.+.|.|.+.++|.+.+.|+++|..+.......          ....|
T Consensus       320 ~~l~V~~~p-~~~~~~-----~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~----------~~~~L  383 (772)
T 3v2a_R          320 TFVRVHEKP-FVAFGS-----GMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------AGHVL  383 (772)
T ss_dssp             EEEEEECCC-C---------------------------------------------------------------------
T ss_pred             EEEEEeCCC-eeEecc-----CCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc----------cceeE
Confidence            888887654 221110     01123467899999999999999999999999998886532221          12389


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccCCCe-E
Q psy670          166 EINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKPRPE-V  239 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~-v  239 (540)
                      .|.+++.+|+|.|+|.+.|..|..  +..+.|.|..       +|.+...   .....+.+|+.+.|.|.+.+.|.+. +
T Consensus       384 ~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-------~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v  456 (772)
T 3v2a_R          384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-------PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI  456 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-------CCcccccccCCCccccCCCCcEEEEeEeccCCCCcEE
Confidence            999999999999999999988765  4455566653       4444322   1112367899999999999999986 9


Q ss_pred             EEEeCCEEeec--------------------------cCc-----eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          240 KWFKADKLVKE--------------------------SSK-----IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       240 ~W~~~~~~l~~--------------------------~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      .|++++.....                          ...     .............+.|.|.++  +|+|.|+|.|.|
T Consensus       457 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N  534 (772)
T 3v2a_R          457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVN  534 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEc
Confidence            99997432100                          000     000000111122246777776  689999999999


Q ss_pred             CCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE-------
Q psy670          289 EFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN-------  361 (540)
Q Consensus       289 ~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-------  361 (540)
                      ..|.....+.+.|..       +|.+...+. ..+.+|+.+.|.|.+.+.|.+.+.|+++|..+.........       
T Consensus       535 ~~g~~~~~~~l~V~~-------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  606 (772)
T 3v2a_R          535 KVGRGERVISFHVTR-------GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL  606 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccceeEEEEEEC-------CceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccc
Confidence            999888777777765       444443333 34678999999999999999999999998766433221110       


Q ss_pred             ---------EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE--EEEEEEEEEEEEEEEeeecCcceeeeeeeeee
Q psy670          362 ---------VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN--ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKT  430 (540)
Q Consensus       362 ---------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                               ....+......|.|.+++.+|+|.|+|.|.|..+...  ....|.|..                       
T Consensus       607 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~-----------------------  663 (772)
T 3v2a_R          607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE-----------------------  663 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc-----------------------
Confidence                     0011222233699999999999999999999665433  334444432                       


Q ss_pred             cccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEE--------
Q psy670          431 RSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHV--------  502 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~--------  502 (540)
                                           ..+|.|...+.+..+.+|+.++|.|.+.|.|+|+|+|+|+|..+..+.+..        
T Consensus       664 ---------------------~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L  722 (772)
T 3v2a_R          664 ---------------------RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL  722 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEE
Confidence                                 127888877777889999999999999999999999999999887653221        


Q ss_pred             --EEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670          503 --VHIEQVKDVSMNFELWLGIVEKRGPSIKIIY  533 (540)
Q Consensus       503 --~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~  533 (540)
                        ..+...|.|.|+|.+.+....... ...+.+
T Consensus       723 ~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V  754 (772)
T 3v2a_R          723 TIRRVRKEDEGLYTCQACSVLGCAKV-EAFFII  754 (772)
T ss_dssp             ---------------------------------
T ss_pred             EECcCCHHHCEEEEEEEEeCCcceeE-EEEEEE
Confidence              246668899999999875554443 334433

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.6e-41  Score=334.21  Aligned_cols=349  Identities=21%  Similarity=0.369  Sum_probs=265.8

Q ss_pred             cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccc-----ccCCCeeEEEEEEccCcc
Q psy670            8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNV-----QKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~~~~~~~~   81 (540)
                      +.|.+.| .|.      +.+.|+|+|..+......+.....++       +|.|.++     +.+|+|.|+|.+.+..+.
T Consensus        41 L~C~~~~~~p~------~~v~W~k~g~~~~~~~~~~~~~~~~~-------~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~  107 (403)
T 3laf_A           41 LNCSAESDRGV------PVIKWKKDGLILALGMDDRKQQLPNG-------SLLIQNILHSRHHKPDEGLYQCEASLGDSG  107 (403)
T ss_dssp             ECCEEECTTCC------CEEEEEETTEECCTTSCTTEEECTTS-------CEEECSCCCBTTBCSSCEEEEEEEECGGGC
T ss_pred             EEEEcCCCCCC------ceEEEEECCEECccCCcccEEEecCC-------cEEEeeeeccCCCCCcceEEEEEEEeCCCc
Confidence            6688886 455      88999999999875544344444444       6777777     778999999999965443


Q ss_pred             e--eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC---CceEEEEeec
Q psy670           82 G--SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT---GRIKMSKKSI  156 (540)
Q Consensus        82 ~--~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~~  156 (540)
                      .  +..+.|.|..++ .+.        .......+.+|+.+.|.|.+.+.|.+.+.|++++..+...   .+....    
T Consensus       108 ~~~s~~~~l~v~~p~-~~~--------~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----  174 (403)
T 3laf_A          108 SIISRTAKVMVAGPL-RFL--------SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL----  174 (403)
T ss_dssp             EEECCCEEEEECCCC-EEC--------SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEEC----
T ss_pred             cEEEEEEEEEecCCC-ccc--------cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEc----
Confidence            3  345566665432 111        1123456889999999999999999999999999877432   222211    


Q ss_pred             CcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670          157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP  235 (540)
Q Consensus       157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  235 (540)
                       ...   .|.|.+++.+|+|.|+|.+.+..+.. ...+.+.|...+... .++.+...+....+.+|+.+.|.|.+.+.|
T Consensus       175 -~~~---~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  249 (403)
T 3laf_A          175 -PSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH-RQLYFLQRPSNVIAIEGKDAVLECCVSGYP  249 (403)
T ss_dssp             -TTS---CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-EEEEEEECCCCEEEETTSCEEECCEEEEES
T ss_pred             -CCc---eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcc-cCceEecCCCceEecCCCcEEEEEEcCCCC
Confidence             111   79999999999999999999987653 345666666432210 122344456667778899999999999999


Q ss_pred             CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670          236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI  315 (540)
Q Consensus       236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~  315 (540)
                      .+.+.|++++..+............      ..|.|.+++.+|+|.|+|.+.|..|.....+.+.|..       +|.+.
T Consensus       250 ~~~~~W~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~  316 (403)
T 3laf_A          250 PPSFTWLRGEEVIQLRSKKYSLLGG------SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-------PPWFL  316 (403)
T ss_dssp             CCEEEEEETTEECCCSSSSEEEETT------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEE
T ss_pred             CCeEEEEECCeeccCCCceEEECCc------cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-------CCcEe
Confidence            9999999999988654433222211      1699999999999999999999998888888888876       67777


Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.........   .+.    .|.|.++..+|+|.|+|.|.|..|
T Consensus       317 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~~----~L~i~~v~~~d~G~Y~C~a~N~~G  389 (403)
T 3laf_A          317 NHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGS----NLRILGVVKSDEGFYQCVAENEAG  389 (403)
T ss_dssp             ECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE---TTT----EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe---cCc----cEEEeccccccCEEEEEEEEcCCc
Confidence            7777788899999999999999999999999999998776654432   222    799999999999999999999999


Q ss_pred             eeEEEEEEEEEE
Q psy670          396 ELNANLTLNIEM  407 (540)
Q Consensus       396 ~~~~~~~l~V~~  407 (540)
                      ....++.|.|..
T Consensus       390 ~~~~~~~l~V~~  401 (403)
T 3laf_A          390 NAQSSAQLIVPK  401 (403)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEEEEeC
Confidence            999999998875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=329.16  Aligned_cols=344  Identities=13%  Similarity=0.165  Sum_probs=233.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .+.|.+.|.|.      +.|.|++++..+.....+..    +.   .+..+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus        67 ~L~C~v~g~P~------p~i~W~~~~~~l~~~~~~~~----~~---~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~  133 (423)
T 3qs7_E           67 TLQVLVDAPGN------ISCLWVFKHSSLNCQPHFDL----QN---RGVVSMVILKMTETQAGEYLLFIQSEATNYTILF  133 (423)
T ss_dssp             EEEEECSCCSS------CEEEEEETTEEECCCCBC------------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred             EEEEEEEcCCC------CeEEEEECCCccCccceecc----cc---ceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE
Confidence            36799999887      99999999988764333211    11   1235799999999999999999999998877777


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .|.|...+   .+       .+..+..+..|+.+.|.|.+.|.|.|.|.|+|++..+...... ........     ...
T Consensus       134 ~l~V~~~p---~~-------~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~~~~~~~-----~~~  197 (423)
T 3qs7_E          134 TVSIRNTL---LY-------TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SPAVVKKE-----EKV  197 (423)
T ss_dssp             EEEEC---------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEEC-----CSE
T ss_pred             EEEEecCc---cc-------cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-cccccccc-----ceE
Confidence            77776432   11       1123445667888999999999999999999988755321100 00000000     011


Q ss_pred             EcCCCCCCCeEEEEEEEcCCceeEE-EEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeC
Q psy670          167 INNPTKDDGGNYRCNACNSIGESNA-NIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKA  244 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~  244 (540)
                      +   ...|+|.|+|.|.|..|.... .+.|.|..       .|.+  .+....+.+|+.+.|.|.+.+ .|.+.+.|+++
T Consensus       198 l---~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~  265 (423)
T 3qs7_E          198 L---HELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE  265 (423)
T ss_dssp             E---CCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEES
T ss_pred             E---ecccCeEEEEEEEcCCCCcceeeEEEEEec-------CCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEEC
Confidence            1   578999999999999987643 46666654       2222  233667788999999999998 77799999999


Q ss_pred             CEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC--ce
Q psy670          245 DKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP--KI  320 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~--~~  320 (540)
                      +..+..............  ......|.|.+++.+|+|.|+|.|.|.   ....+.|.|..       +|.+...+  ..
T Consensus       266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~-------~p~i~~~~~~~~  335 (423)
T 3qs7_E          266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-------KGFINATNSSED  335 (423)
T ss_dssp             SSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES-------SCEEEEC---CE
T ss_pred             CEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe-------CCcceEcCCCcc
Confidence            988765432211111111  222347999999999999999999987   56667777765       45554433  34


Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+.+|+.+.|.|.+.|.|.|.|.|+++|..+.......     .+..   .+.......+|+|.|+|.|.|..|....+
T Consensus       336 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~---~~~~~~~~~~D~G~YtC~A~N~~G~~~~s  407 (423)
T 3qs7_E          336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-----DNGY---SISKFCNHKHQPGEYIFHAENDDAQFTKM  407 (423)
T ss_dssp             ECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-----SSSS---EEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred             EEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc-----cCCc---EEEEEecccccCEEEEEEEEcCCceEEEE
Confidence            567789999999999999999999999999986643100     0010   22224456789999999999999999999


Q ss_pred             EEEEEEEEE
Q psy670          401 LTLNIEMVR  409 (540)
Q Consensus       401 ~~l~V~~~~  409 (540)
                      +.|.|...|
T Consensus       408 ~~L~v~~~p  416 (423)
T 3qs7_E          408 FTLNIRSGT  416 (423)
T ss_dssp             EEEC-----
T ss_pred             EEEEEecCC
Confidence            999998754

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.3e-41  Score=329.29  Aligned_cols=345  Identities=24%  Similarity=0.362  Sum_probs=261.1

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEccccc-CCCeeEEEEEEccCccee-e
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQK-SDSGEYKVIAKNKNGEGS-S   84 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~-~   84 (540)
                      .+.|.+.|.|.      +.|.|+|+|..+..+...++... ++       +|.|.++.. +|+|.|+|.+.|..|... .
T Consensus        26 ~l~C~~~g~p~------~~v~W~k~g~~~~~~~~~~~~~~-~~-------~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (382)
T 1cs6_A           26 TLTCRARANPP------ATYRWKMNGTELKMGPDSRYRLV-AG-------DLVISNPVKAKDAGSYQCVATNARGTVVSR   91 (382)
T ss_dssp             EECCEEEEESC------CEEEEEETTEECCCSTTSSEEEE-TT-------EEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             EEEEEecCCCC------CEEEEEECCEECCcCCCccEEee-CC-------eEEEecccccccCEEEEEEEEcCCcEEEec
Confidence            36799999888      89999999999876533333332 33       799999997 999999999999888653 3


Q ss_pred             eEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec--CCCceEEEEeecCcceE
Q psy670           85 TVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE--DTGRIKMSKKSIGKDTY  161 (540)
Q Consensus        85 ~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~  161 (540)
                      .+.|.|...+. +.       ........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.  ...+.....    ..  
T Consensus        92 ~~~l~v~~~~~-~~-------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~----~~--  157 (382)
T 1cs6_A           92 EASLRFGFLQE-FS-------AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ----TT--  157 (382)
T ss_dssp             CEEEEEEEECC-CC-------SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT----TT--
T ss_pred             ceEEEeecccc-cc-------ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEec----Cc--
Confidence            56666664431 11       112345678899999999996 567889999999987643  222222111    11  


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCceeE-----EEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecccC
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSIGESN-----ANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKP  235 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~-----~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p  235 (540)
                       ..|.|.+++.+|+|.|+|.+.+..+...     ..+.+.+..... ...+|.+.. .+....+.+|+.+.|.|.+.+.|
T Consensus       158 -~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~-~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p  235 (382)
T 1cs6_A          158 -GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA-RQYAPSIKAKFPADTYALTGQMVTLECFAFGNP  235 (382)
T ss_dssp             -CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-CCEEEEEEECCCSEEEEETTCCEEEECEEEEES
T ss_pred             -eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhc-ccCCCceeccCCCceEEeCCCeEEEEEEEccCC
Confidence             1799999999999999999998764321     224444432111 112444433 34567788999999999999999


Q ss_pred             CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670          236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI  315 (540)
Q Consensus       236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~  315 (540)
                      .+.+.|++++..+.....      ..    ...|.|.+++.+|+|.|+|.+.|..|.....+.+.|..       +|.+.
T Consensus       236 ~~~i~W~~~~~~~~~~~~------~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~  298 (382)
T 1cs6_A          236 VPQIKWRKLDGSQTSKWL------SS----EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-------QPDWL  298 (382)
T ss_dssp             CCEEEEEECCSCCSCCCS------BS----SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEE
T ss_pred             CCEEEEEECCcccccEEe------cC----CcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-------CCCcc
Confidence            999999998876543110      01    12799999999999999999999999888888888876       66777


Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++...    ++    .|.|.++..+|+|.|+|.|.|..|
T Consensus       299 ~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~----~L~i~~v~~~d~G~Y~C~a~N~~G  370 (382)
T 1cs6_A          299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GG----ELRFSKLVLEDSGMYQCVAENKHG  370 (382)
T ss_dssp             ECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TT----EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CC----EEEECcCCcccCEEEEEEEEeCCC
Confidence            7777788999999999999999999999999999999877654431    22    799999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy670          396 ELNANLTLNIE  406 (540)
Q Consensus       396 ~~~~~~~l~V~  406 (540)
                      ....++.|.|.
T Consensus       371 ~~~~~~~l~V~  381 (382)
T 1cs6_A          371 TVYASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            99999999885

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=3.8e-40  Score=324.27  Aligned_cols=344  Identities=20%  Similarity=0.341  Sum_probs=260.1

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-----CCCCCeEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-----TKDDGGNYRCNACN  184 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~  184 (540)
                      ...+.+|+.++|.|.+.+ .|.+.+.|+|+|..+............   +.   .|.|.++     +.+|+|.|+|.+.+
T Consensus        30 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~---~~---~l~i~~~~~~~~~~~D~G~Y~C~~~~  103 (403)
T 3laf_A           30 DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP---NG---SLLIQNILHSRHHKPDEGLYQCEASL  103 (403)
T ss_dssp             CEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECT---TS---CEEECSCCCBTTBCSSCEEEEEEEEC
T ss_pred             ceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEec---CC---cEEEeeeeccCCCCCcceEEEEEEEe
Confidence            456789999999999976 577899999999988643221111111   11   5666666     77899999999996


Q ss_pred             CCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCce-EEEEecC
Q psy670          185 SIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI-KIIVNEQ  261 (540)
Q Consensus       185 ~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~-~~~~~~~  261 (540)
                      ..+..  ...+.+.|..       ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ..... .
T Consensus       104 ~~~~~~~s~~~~l~v~~-------p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~  175 (403)
T 3laf_A          104 GDSGSIISRTAKVMVAG-------PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL-P  175 (403)
T ss_dssp             GGGCEEECCCEEEEECC-------CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEEC-T
T ss_pred             CCCccEEEEEEEEEecC-------CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEc-C
Confidence            54332  4456666664       566666677778889999999999999999999999999877532211 11111 1


Q ss_pred             CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC
Q psy670          262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM  340 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~  340 (540)
                      .+    .|.|.+++.+|+|.|+|.+.|..+.. .....+.|...+... .++.+...+....+.+|+.+.|.|.+.+.|.
T Consensus       176 ~~----~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~  250 (403)
T 3laf_A          176 SG----ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH-RQLYFLQRPSNVIAIEGKDAVLECCVSGYPP  250 (403)
T ss_dssp             TS----CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-EEEEEEECCCCEEEETTSCEEECCEEEEESC
T ss_pred             Cc----eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcc-cCceEecCCCceEecCCCcEEEEEEcCCCCC
Confidence            11    69999999999999999999987653 345666666533211 1224555666778889999999999999999


Q ss_pred             CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcc
Q psy670          341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKG  420 (540)
Q Consensus       341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~  420 (540)
                      +.+.|++++..+.........  ..+.    .|.|.++..+|+|.|+|.|.|..|....++.|.|..             
T Consensus       251 ~~~~W~~~~~~~~~~~~~~~~--~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------------  311 (403)
T 3laf_A          251 PSFTWLRGEEVIQLRSKKYSL--LGGS----NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-------------  311 (403)
T ss_dssp             CEEEEEETTEECCCSSSSEEE--ETTT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-------------
T ss_pred             CeEEEEECCeeccCCCceEEE--CCcc----EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-------------
Confidence            999999999988754432211  1222    799999999999999999999999999999999987             


Q ss_pred             eeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe
Q psy670          421 IVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK  500 (540)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~  500 (540)
                                                       +|.+...+....+.+|+.++|.|.+.|.|.+.++|+|+|..+..+..
T Consensus       312 ---------------------------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~  358 (403)
T 3laf_A          312 ---------------------------------PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDY  358 (403)
T ss_dssp             ---------------------------------EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSS
T ss_pred             ---------------------------------CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCc
Confidence                                             77887777888899999999999999999999999999998865543


Q ss_pred             EEE---------EEEecCCeEEEEEEeeeeeeee
Q psy670          501 HVV---------HIEQVKDVSMNFELWLGIVEKR  525 (540)
Q Consensus       501 ~~~---------~~~~~~~g~y~c~~~~~~~~~~  525 (540)
                      ..+         .+...|.|.|+|.+.+...+..
T Consensus       359 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          359 FQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEecCccEEEeccccccCEEEEEEEEcCCceEE
Confidence            322         3455789999999987554443

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.4e-40  Score=326.46  Aligned_cols=348  Identities=23%  Similarity=0.384  Sum_probs=254.8

Q ss_pred             cceeeeC-cceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee-ee
Q psy670            8 KSYTLEG-EPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS-ST   85 (540)
Q Consensus         8 ~~c~~~g-~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-~~   85 (540)
                      +.|.+.| .|.      +.+.|+|+|..+....+ .+.....+      ++|.|.+++.+|+|.|+|.+.|..|... ..
T Consensus        26 l~C~~~~~~p~------~~v~W~k~g~~~~~~~~-~~~~~~~~------~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~   92 (395)
T 1bih_A           26 LECIIEGNDQG------VKYSWKKDGKSYNWQEH-NAALRKDE------GSLVFLRPQASDEGHYQCFAETPAGVASSRV   92 (395)
T ss_dssp             ECCCEESCCSS------CEEEEEESSSBCCTTTT-TEEECTTS------CCEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EEEEEecCCCC------ceEEEEECCcCcccccc-eEEEecCC------ceEEEecCCCCCCcEEEEEEEeCCCeEEeEE
Confidence            6698888 676      99999999999876653 22222222      4899999999999999999999887654 34


Q ss_pred             EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCC---EeecC----CCceEEEEeecC
Q psy670           86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGT---KVIED----TGRIKMSKKSIG  157 (540)
Q Consensus        86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~---~~~~~----~~~~~~~~~~~~  157 (540)
                      +.|.|...+ .        +.+......+.+|+.+.|.|.+ .+.|.+.+.|++++   .+...    ..+.....    
T Consensus        93 ~~l~v~~~~-~--------p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----  159 (395)
T 1bih_A           93 ISFRKTYLI-A--------SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP----  159 (395)
T ss_dssp             EEEEEEEEE-C--------CCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT----
T ss_pred             EEEEEEEee-c--------CCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcC----
Confidence            556554332 1        1112224567799999999996 78899999999976   22111    22222211    


Q ss_pred             cceEEEEEEEcCCCCCCCe---EEEEEEEcCCceeEEEEEEEEe---cCcC---CCCCCCeeccCCceeecCCCCeEEEE
Q psy670          158 KDTYLLRLEINNPTKDDGG---NYRCNACNSIGESNANIALNFQ---GGEN---GAGFAPSFIEKPRIIPNESGTLIQMK  228 (540)
Q Consensus       158 ~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~l~v~---~~~~---~~~~~p~~~~~~~~~~~~~g~~~~l~  228 (540)
                       +.   .|.|.+++.+|+|   .|+|.+.+..+.........+.   ....   .....|.+  .+....+.+|+.+.|.
T Consensus       160 -~~---~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~  233 (395)
T 1bih_A          160 -DG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIY  233 (395)
T ss_dssp             -TS---CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEE
T ss_pred             -CC---cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEE
Confidence             11   6999999999999   9999999988764333222211   1100   00112333  2445667889999999


Q ss_pred             EEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee-eEEEEEeeccCC
Q psy670          229 CKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA-NLNLNIEAEAEP  307 (540)
Q Consensus       229 C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~~~~  307 (540)
                      |.+.+.|.+.+.|++++..+.......+.......  ...|.|.+++.+|+|.|+|.+.|..|.... .+.|.|..    
T Consensus       234 C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~----  307 (395)
T 1bih_A          234 CMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----  307 (395)
T ss_dssp             EEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE----
T ss_pred             EEeccCCCCeEEEEECCEEcCCCCceeEEEEecCC--CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc----
Confidence            99999999999999999988654332222111111  126999999999999999999999888655 77888876    


Q ss_pred             CCCCCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          308 EGDPPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       308 ~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                         +|.+...+.. ..+.+|+.+.|.|.+.|.|.+.+.|+++|..+... ++..    .++    .|.|.++..+|+|.|
T Consensus       308 ---~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~----~~~----~L~i~~~~~~d~G~Y  375 (395)
T 1bih_A          308 ---APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV----TDS----GLVIKGVKNGDKGYY  375 (395)
T ss_dssp             ---EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE----ETT----EEEESSCCSTTCEEE
T ss_pred             ---CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEE----ECC----EEEEeeCCcccCEEE
Confidence               6677776665 77889999999999999999999999999998654 3322    122    799999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|.|.|..|....++.|.|
T Consensus       376 ~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          376 GCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEccCCCceEEEEEEE
Confidence            9999999999999888877

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.7e-40  Score=323.54  Aligned_cols=337  Identities=19%  Similarity=0.318  Sum_probs=249.5

Q ss_pred             ccceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCC------CeeEEEEEEccC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD------SGEYKVIAKNKN   79 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D------~G~Y~C~~~~~~   79 (540)
                      .+.|.+.|.|.      +.|+|+| ||..+....+++.. ..++       +|.|.+++.+|      +|.|+|.+.|..
T Consensus        23 ~l~C~~~g~p~------p~v~W~k~~g~~~~~~~~~~~~-~~~~-------~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~   88 (388)
T 2v5m_A           23 EIECKASGNPM------PEIIWIRSDGTAVGDVPGLRQI-SSDG-------KLVFPPFRAEDYRQEVHAQVYACLARNQF   88 (388)
T ss_dssp             EEECEEEEESC------CEEEEEETTSCBCCCBTTTBEE-CSTT-------EEEECCCCGGGCCHHHHEEEEEEEEEETT
T ss_pred             EEEEECCCCCC------CEEEEEcCCCCccccCCCceEE-cCCc-------eEEecccChhhccccccCceEEEEEEccC
Confidence            46799999888      9999999 88888765444332 2344       79999999997      999999999998


Q ss_pred             cce-eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCC---CceEEEeCCEeecC-----CCceE
Q psy670           80 GEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPM---PDIIWYQGTKVIED-----TGRIK  150 (540)
Q Consensus        80 ~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~-----~~~~~  150 (540)
                      |.. +..+.|.+...+ .+.        .......+.+|+.++|.|.+.+.+.   +.+.|++++..+..     ..+..
T Consensus        89 g~~~s~~~~v~v~~~p-~~~--------~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  159 (388)
T 2v5m_A           89 GSIISRDVHVRAVVAQ-YYE--------ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL  159 (388)
T ss_dssp             EEEECCCEEEEEECCC-CCC--------CBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred             CeEEecceEEEEcccc-ccc--------cCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence            864 356666665433 111        1123456889999999999977653   68999999876632     12222


Q ss_pred             EEEeecCcceEEEEEEEcCCCCCCC-eEEEEEEEcCCcee-EE---EEEEEEecCcCCCCCCCeec-cCCceeecCCCCe
Q psy670          151 MSKKSIGKDTYLLRLEINNPTKDDG-GNYRCNACNSIGES-NA---NIALNFQGGENGAGFAPSFI-EKPRIIPNESGTL  224 (540)
Q Consensus       151 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~-~~---~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~  224 (540)
                      ...     +   ..|.|.+++.+|+ |.|+|.+.+..+.. ..   ...+.|......  ..|.+. .......+.+|+.
T Consensus       160 ~~~-----~---~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~v~~G~~  229 (388)
T 2v5m_A          160 VLP-----S---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS--SAPRTPALVQKPLELMVAHT  229 (388)
T ss_dssp             ECT-----T---SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC--EEEECCSSCCCCEEEETTSC
T ss_pred             Ecc-----C---CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcC--CCCcCccccCCceEEeeCCc
Confidence            211     1   1799999999999 99999999875432 21   124455432110  011111 1122345678999


Q ss_pred             EEEEEEecccCCCeEEEEeCCEEee------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          225 IQMKCKCSAKPRPEVKWFKADKLVK------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       225 ~~l~C~~~~~p~~~v~W~~~~~~l~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                      +.|.|.+.++|.+.+.|++++..+.      ...+...  .      ...|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus       230 v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  301 (388)
T 2v5m_A          230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ--V------SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV  301 (388)
T ss_dssp             EEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE--E------TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEecCCCCcccccccccCceec--c------cCEEEECcCCHHHCeEEEEEEecCCCceeEEEE
Confidence            9999999999999999999753221      1112111  1      127999999999999999999999998888888


Q ss_pred             EEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          299 LNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       299 l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      |.|..       +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.....              .|.|.++
T Consensus       302 l~V~~-------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~--------------~L~i~~v  360 (388)
T 2v5m_A          302 LTVTA-------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESV  360 (388)
T ss_dssp             EEEEE-------EEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS--------------EEEESSC
T ss_pred             EEEeC-------CCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCC--------------EEEEecC
Confidence            88876       55666667777889999999999999999999999999998865432              7999999


Q ss_pred             CCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          379 RKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      ..+|+|.|+|.|.|..|....++.|.|
T Consensus       361 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          361 KKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            999999999999999999999888876

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.1e-39  Score=318.25  Aligned_cols=335  Identities=19%  Similarity=0.318  Sum_probs=242.1

Q ss_pred             cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-CCCCCeEEEEEEEcCCcee-EEE
Q psy670          115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-TKDDGGNYRCNACNSIGES-NAN  192 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~-~~~  192 (540)
                      .+|+.+.|.|.+.|.|.+.|.|+|+|..+......+....   ..    .|.|.+. +.+|+|.|+|.|.|..|.. +..
T Consensus        21 ~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~---~g----~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~   93 (384)
T 3kld_A           21 SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DG----SLLINNPNKTQDAGTYQCIATNSFGTIVSRE   93 (384)
T ss_dssp             CSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEE---TT----EEEEESCCHHHHCEEEEEEEEETTEEEECCC
T ss_pred             CCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEE---CC----EEEEcCCCCcccCEEEEEEEEcCcccEEecc
Confidence            4899999999999999999999999999865433322211   11    5777665 7889999999999998874 334


Q ss_pred             EEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          193 IALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       193 ~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.+...       +.+. .......+.+|+.+.|.|.+. +.|.+.+.|++++..+....+...  ....+    .|.
T Consensus        94 ~~l~v~~~-------~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~----~L~  160 (384)
T 3kld_A           94 AKLQFAYL-------ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV--SQETG----NLY  160 (384)
T ss_dssp             EEEEEEEE-------CCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEE--CTTTC----CEE
T ss_pred             eEEEEecc-------cccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEE--EcCCC----cEE
Confidence            55555431       1121 123345677899999999875 467789999999988764443322  11111    599


Q ss_pred             EeCCCCCCcEEEEEEEEcCCCCeee---eEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCCCeEEEE
Q psy670          271 ITDPIGPDSGTYRCNVKNEFGESNA---NLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWF  346 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~~~~~---~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~  346 (540)
                      |.+++.+|+|.|+|.+.|..+....   ...+.+.........+|.+ ...+....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus       161 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~  240 (384)
T 3kld_A          161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR  240 (384)
T ss_dssp             ESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             EeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEE
Confidence            9999999999999999998765421   1222222110000112222 33456677889999999999999999999999


Q ss_pred             ECC-EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeee
Q psy670          347 HEG-KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKM  425 (540)
Q Consensus       347 ~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  425 (540)
                      +++ ..+......    ...+.    .|.|.+++.+|+|.|+|.|.|..|....+..|.|..                  
T Consensus       241 k~~~~~~~~~~~~----~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~------------------  294 (384)
T 3kld_A          241 RADGKPIARKARR----HKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------------------  294 (384)
T ss_dssp             ETTCCCCCTTCEE----CTTSC----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------------------
T ss_pred             eCCCcccccccee----cCCCc----EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec------------------
Confidence            954 444332211    11122    799999999999999999999999998889998887                  


Q ss_pred             eeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE--
Q psy670          426 GLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV--  503 (540)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~--  503 (540)
                                                  +|.+...+.+..+.+|+.+.|.|.+.|.|.|+++|+|+|.++..+.++.+  
T Consensus       295 ----------------------------~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~  346 (384)
T 3kld_A          295 ----------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ  346 (384)
T ss_dssp             ----------------------------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEET
T ss_pred             ----------------------------CCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeC
Confidence                                        77777777788899999999999999999999999999999876554332  


Q ss_pred             ------EEEecCCeEEEEEEeeeeee
Q psy670          504 ------HIEQVKDVSMNFELWLGIVE  523 (540)
Q Consensus       504 ------~~~~~~~g~y~c~~~~~~~~  523 (540)
                            .+...|.|.|+|.+.+.--.
T Consensus       347 ~~L~i~~v~~~D~G~Y~C~A~N~~G~  372 (384)
T 3kld_A          347 GTLNITIVNLSDAGMYQCVAENKHGV  372 (384)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEEeecChhhCEEEEEEEEeCCce
Confidence                  23446899999999875443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=100.00  E-value=2.4e-41  Score=361.18  Aligned_cols=420  Identities=18%  Similarity=0.221  Sum_probs=109.5

Q ss_pred             cceeeeCcceeEEeecceeeeeec--CeecccC-CceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceee
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHK--GSLLKMS-DRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSS   84 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~   84 (540)
                      +.|.+.+ |.      +.+.|+|+  +..+... .....  ...       ..|.|.+++.+|+|.|+|.+.+......+
T Consensus       148 L~C~~~~-p~------~~v~w~~~~~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  211 (772)
T 3v2a_R          148 IPCLGSI-SN------LNVSLCARYPEKRFVPDGNRISW--DSK-------KGFTIPSYMISYAGMVFCEAKINDESYQS  211 (772)
T ss_dssp             ECCCCSC-SS------CCEEEEEETTTEEECCCSSSCEE--ETT-------TEEEEEGGGTTTCSEEEEEEEETTEEEEC
T ss_pred             EEccCCC-CC------cEEEEEecCCCccccCCCceeec--CCC-------CCeEecCCChhhCeEEEEEEEECCceEEE
Confidence            4566655 44      89999998  6655433 22222  222       37999999999999999999976543333


Q ss_pred             e-EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee--cCCCceEEEeCCEeecCCCceEEEEeec---Cc
Q psy670           85 T-VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIEDTGRIKMSKKSI---GK  158 (540)
Q Consensus        85 ~-~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~  158 (540)
                      . ..+.+...+ .+.+..     .+..+..+.+|+.++|.|.+.+  .+.+.+.|++++..+.............   ..
T Consensus       212 ~~~~~~v~~~~-~~~v~~-----~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  285 (772)
T 3v2a_R          212 IMYIVVVVGYR-IYDVVL-----SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM  285 (772)
T ss_dssp             CEEEEEEECCC-EEEEEE-----ECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCC
T ss_pred             EEEEEEEecCc-cceeee-----CCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccc
Confidence            2 333333221 121110     1122357889999999999987  4456899999988765433222111100   22


Q ss_pred             ceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccC
Q psy670          159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKP  235 (540)
Q Consensus       159 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p  235 (540)
                      ....+.|.|.+++.+|+|.|+|.+.+..+.....+.|.|..       +|.+...   +....+.+|+.+.|.|.+.++|
T Consensus       286 ~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p  358 (772)
T 3v2a_R          286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-------KPFVAFGSGMESLVEATVGERVRIPAKYLGYP  358 (772)
T ss_dssp             EEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEEC-------CCC-----------------------------
T ss_pred             eEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeC-------CCeeEeccCCCCcEEEcCCCcEEEEEEEeeeC
Confidence            33456899999999999999999999988888888888875       3333222   2345678899999999999999


Q ss_pred             CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee--eEEEEEeeccCCCCCCCe
Q psy670          236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA--NLNLNIEAEAEPEGDPPT  313 (540)
Q Consensus       236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v~~~~~~~~~~p~  313 (540)
                      .+.+.|+++|..+.......         ....|.|.++..+|+|.|+|.+.|..|....  .+.+.|..       +|.
T Consensus       359 ~~~v~W~~~g~~l~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~-------~P~  422 (772)
T 3v2a_R          359 PPEIKWYKNGIPLESNHTIK---------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV-------PPQ  422 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEECCEeCCCCceEc---------cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec-------CCc
Confidence            99999999998876532211         1237999999999999999999998876543  44455543       343


Q ss_pred             EEeCC---ceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccC--------------------------CC-----ce
Q psy670          314 FIEKP---KIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQ--------------------------TD-----RI  358 (540)
Q Consensus       314 ~~~~~---~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~--------------------------~~-----~~  358 (540)
                      +....   ....+.+|+.+.|.|.+.+.|.|. +.|++++.....                          ..     ..
T Consensus       423 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  502 (772)
T 3v2a_R          423 IGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN  502 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEecc
Confidence            32211   112377899999999999999996 999997432100                          00     00


Q ss_pred             EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccc
Q psy670          359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFS  438 (540)
Q Consensus       359 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (540)
                      ......+.....+.|.|..+  +|+|.|+|.|.|..|.....+.|.|..                               
T Consensus       503 ~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~-------------------------------  549 (772)
T 3v2a_R          503 QFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR-------------------------------  549 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-------------------------------
Confidence            00011112222347777776  689999999999999988888888876                               


Q ss_pred             cCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC-------------------
Q psy670          439 VNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN-------------------  499 (540)
Q Consensus       439 ~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~-------------------  499 (540)
                                     +|.+...+. ..+.+|+.++|.|.+.|.|.+.++|+|+|..+....                   
T Consensus       550 ---------------~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  613 (772)
T 3v2a_R          550 ---------------GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN  613 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------CceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeecc
Confidence                           666655443 457789999999999999999999999986653211                   


Q ss_pred             -------------eEEEEEEecCCeEEEEEEeeee
Q psy670          500 -------------KHVVHIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       500 -------------~~~~~~~~~~~g~y~c~~~~~~  521 (540)
                                   .....+...|.|.|+|.+....
T Consensus       614 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  648 (772)
T 3v2a_R          614 ATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRK  648 (772)
T ss_dssp             -----------------------------------
T ss_pred             ceeeecCCCceEEEEECCCCccCCcEEEEEEEeCC
Confidence                         1122466688999999998743

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.4e-39  Score=331.33  Aligned_cols=360  Identities=15%  Similarity=0.191  Sum_probs=245.0

Q ss_pred             ccceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCCCe-eEEEEEEccCccee-
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG-EYKVIAKNKNGEGS-   83 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~-   83 (540)
                      .+.|.+.|.|.      +.|.||| ||..+..+.++.+  ..++       .|.|.+++.+|+| .|+|.+.|..+... 
T Consensus       133 ~l~C~~~~~~~------~~v~W~~~~g~~l~~~~~~~~--~~~~-------~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s  197 (524)
T 2ec8_A          133 LVRCPLTDPEV------TNYSLKGCQGKPLPKDLRFIP--DPKA-------GIMIKSVKRAYHRLCLHCSVDQEGKSVLS  197 (524)
T ss_dssp             EECCCBSCCCC------SCEEEECSSSCCCCSSCEEEE--ETTT-------EEEEESCCGGGTTCEEEEEEC----CCCC
T ss_pred             EEECcCCCCcc------ceEEEEccCCcCcCCCCceeE--CCCc-------cEEEeccchhhCCceEEEEEEECCceEEE
Confidence            35688888665      8999998 8888876665543  3333       7999999999999 99999998876553 


Q ss_pred             eeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCc-eEEEeCCEee--cCCCceEEEEeecCcc
Q psy670           84 STVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQGTKVI--EDTGRIKMSKKSIGKD  159 (540)
Q Consensus        84 ~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~--~~~~~~~~~~~~~~~~  159 (540)
                      ..+.|.|...+ .++.+.      .......+.+|+.+.|.|.+.+.|.+. +.|++++..+  .........  .....
T Consensus       198 ~~~~l~V~~~~~~~p~i~------~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~  269 (524)
T 2ec8_A          198 EKFILKVRPAFKAVPVVS------VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNY  269 (524)
T ss_dssp             CCEECCEECCCCSCCEEE------CSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCE
T ss_pred             EEEEEEEEeCCCCCCcEE------ecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCcc
Confidence            36777775211 111111      112234688999999999999998886 9999998873  222111111  00122


Q ss_pred             eEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEecccCC
Q psy670          160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKCSAKPR  236 (540)
Q Consensus       160 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~  236 (540)
                      .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|..       +|.+...   +....+.+|+.+.|.|.+.++|.
T Consensus       270 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~  342 (524)
T 2ec8_A          270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-------KGFINIFPMINTTVFVNDGENVDLIVEYEAFPK  342 (524)
T ss_dssp             EEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEES-------SCEEEEEESSCSEEEECTTCCEEEEEEEEEESC
T ss_pred             ceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEec-------cCceEeecCCCceEEEcCCCcEEEEEEEeecCC
Confidence            3345899999999999999999999999988888998885       5555433   24677889999999999999999


Q ss_pred             Ce-EEEEeCCEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeE
Q psy670          237 PE-VKWFKADKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTF  314 (540)
Q Consensus       237 ~~-v~W~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~  314 (540)
                      +. +.|++++..+........... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|..       +|.+
T Consensus       343 p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~-------~P~i  415 (524)
T 2ec8_A          343 PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT-------KPEI  415 (524)
T ss_dssp             CCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE-------EEEE
T ss_pred             CcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec-------CCeE
Confidence            98 999999998876553222111 11123456899999999999999999999999988888888876       5566


Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC--------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ--------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      ...+.   ..+|   .|.|.+.|.|.|.|.|++++..+..        +...........+.......+.....+|+|.|
T Consensus       416 ~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y  489 (524)
T 2ec8_A          416 LTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTV  489 (524)
T ss_dssp             EEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC----
T ss_pred             eeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEE
Confidence            54432   3455   9999999999999999999776521        11100000111221111223444456899999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNIEMVR  409 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V~~~~  409 (540)
                      +|.|.|..|....++.|.|...+
T Consensus       490 ~C~a~N~~G~~~~~~~l~V~e~~  512 (524)
T 2ec8_A          490 ECKAYNDVGKTSAYFNFAFKGNN  512 (524)
T ss_dssp             -CEEECSSCEEECCCCCCC----
T ss_pred             EEEEEcCCCceEEEEEEEEecCC
Confidence            99999999999999999988744

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=2.5e-39  Score=318.58  Aligned_cols=344  Identities=17%  Similarity=0.345  Sum_probs=253.5

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEc----CCCCCCCeEEEEEEEcC
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEIN----NPTKDDGGNYRCNACNS  185 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~~~  185 (540)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+............ ...    .|.|.    +++.+|+|.|+|.+.|.
T Consensus        25 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~-~~~----~l~i~~~~~~~~~~D~G~Y~C~a~n~   99 (404)
T 3p3y_A           25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR-RSG----TLVIDFRSGGRPEEYEGEYQCFARNK   99 (404)
T ss_dssp             TTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCS-SSC----CCBCCCTTTCCTTSSCEEEEEEEECS
T ss_pred             ccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEec-CCc----eEEEEeccCCCCccCCEEEEEEEEcC
Confidence            3457889999999999999999999999999987533221111100 011    44443    78899999999999999


Q ss_pred             Ccee-EEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeecc-CceEEEEecC
Q psy670          186 IGES-NANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKES-SKIKIIVNEQ  261 (540)
Q Consensus       186 ~~~~-~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~  261 (540)
                      .|.. +..+.|.|...       |.+ ........+.+|+.+.|.|.+ .+.|.+.+.|++++...... .....  . .
T Consensus       100 ~g~~~s~~~~l~V~~~-------p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~-~  169 (404)
T 3p3y_A          100 FGTALSNRIRLQVSKS-------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ--G-H  169 (404)
T ss_dssp             SCEEEEEEEEEEECCC-------CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE--C-T
T ss_pred             CCeEeeeeEEEEEecc-------CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE--c-C
Confidence            8876 46778888753       222 222334667889999999999 77899999999987544332 22221  1 1


Q ss_pred             CCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCCee---eeEEEEEeeccCCCCCCCeEEeCC---ceEEeeCCCeEEEEEE
Q psy670          262 DDTYEIICEITDPIGPD-SGTYRCNVKNEFGESN---ANLNLNIEAEAEPEGDPPTFIEKP---KIRSEQGGKLVVMECK  334 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~---~~~~l~v~~~~~~~~~~p~~~~~~---~~~~~~~g~~v~l~C~  334 (540)
                      .+    .|.|.++...| +|.|+|.+.|..+...   ..+.+.+...+.....+|.+....   ....+.+|+.+.|.|.
T Consensus       170 ~~----~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~  245 (404)
T 3p3y_A          170 NG----DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI  245 (404)
T ss_dssp             TS----CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECC
T ss_pred             CC----cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEE
Confidence            11    58999999999 5999999999877532   224455544332222233333222   3456889999999999


Q ss_pred             EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEe
Q psy670          335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYR  414 (540)
Q Consensus       335 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~  414 (540)
                      +.+.|.+.+.|+++|..+......   ....+.    .|.|.+++.+|+|.|+|.|.|..|.....+.|.|..       
T Consensus       246 ~~g~p~~~v~W~~~~~~~~~~~~~---~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------  311 (404)
T 3p3y_A          246 ASGVPTPDIAWYKKGGDLPSDKAK---FENFNK----ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------  311 (404)
T ss_dssp             BCCSSCCEEEEEETTBCCCTTTEE---EEGGGT----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-------
T ss_pred             ECCCCCCcEEEEECCEECCCCccc---ccccCc----eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-------
Confidence            999999999999999988665431   112222    799999999999999999999999998899998887       


Q ss_pred             eecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCee
Q psy670          415 VRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNT  494 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~  494 (540)
                                                             +|.+...+....+.+|+.++|.|.+.|.|.+.++|+++|..
T Consensus       312 ---------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~  352 (404)
T 3p3y_A          312 ---------------------------------------APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP  352 (404)
T ss_dssp             ---------------------------------------EEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             ---------------------------------------CCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEe
Confidence                                                   78888778888999999999999999999999999999999


Q ss_pred             cCCCCe-----------EEEEEEecCCeEEEEEEeeeeeeee
Q psy670          495 VKEDNK-----------HVVHIEQVKDVSMNFELWLGIVEKR  525 (540)
Q Consensus       495 l~~~~~-----------~~~~~~~~~~g~y~c~~~~~~~~~~  525 (540)
                      +.....           ....+...|.|.|+|.+.+......
T Consensus       353 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  394 (404)
T 3p3y_A          353 LQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLL  394 (404)
T ss_dssp             GGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEE
T ss_pred             cCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEE
Confidence            865431           1113556789999999987554443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.3e-38  Score=311.02  Aligned_cols=335  Identities=18%  Similarity=0.242  Sum_probs=247.8

Q ss_pred             cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCcee-EEE
Q psy670          115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGES-NAN  192 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~-~~~  192 (540)
                      .+|+.++|.|.+.|.|.+.+.|+|+|..+......+....    +   ..|.|.++.. +|+|.|+|.+.|..|.. +..
T Consensus        20 ~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~----~---~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~   92 (382)
T 1cs6_A           20 SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV----A---GDLVISNPVKAKDAGSYQCVATNARGTVVSRE   92 (382)
T ss_dssp             CSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE----T---TEEEEESCCHHHHCEEEEEEEEETTEEEECCC
T ss_pred             CCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee----C---CeEEEecccccccCEEEEEEEEcCCcEEEecc
Confidence            6899999999999999999999999998865422222211    1   1799999987 99999999999988865 334


Q ss_pred             EEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          193 IALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       193 ~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      +.|.|...       +.+ ...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..............    ..|.
T Consensus        93 ~~l~v~~~-------~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~----~~L~  161 (382)
T 1cs6_A           93 ASLRFGFL-------QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT----GNLY  161 (382)
T ss_dssp             EEEEEEEE-------CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTT----CCEE
T ss_pred             eEEEeecc-------ccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCc----eEEE
Confidence            55666532       222 2224456678899999999964 578899999999876532211111111111    1699


Q ss_pred             EeCCCCCCcEEEEEEEEcCCCCeee-----eEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCCCeEE
Q psy670          271 ITDPIGPDSGTYRCNVKNEFGESNA-----NLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPMPEIV  344 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~~~~~-----~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~i~  344 (540)
                      |.+++.+|+|.|+|.+.+..+....     ...+.+..... ...+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.
T Consensus       162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~-~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~  240 (382)
T 1cs6_A          162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA-RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK  240 (382)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC-CCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEE
T ss_pred             EEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhc-ccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEE
Confidence            9999999999999999987654322     23444432111 111344443 3556778899999999999999999999


Q ss_pred             EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeee
Q psy670          345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGK  424 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  424 (540)
                      |++++..+.....      ....    .|.|.+++.+|+|.|+|.|.|..|.....+.|.|..                 
T Consensus       241 W~~~~~~~~~~~~------~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-----------------  293 (382)
T 1cs6_A          241 WRKLDGSQTSKWL------SSEP----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-----------------  293 (382)
T ss_dssp             EEECCSCCSCCCS------BSSS----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-----------------
T ss_pred             EEECCcccccEEe------cCCc----EEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-----------------
Confidence            9998876543111      1122    799999999999999999999999988888998887                 


Q ss_pred             eeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE-
Q psy670          425 MGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-  503 (540)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~-  503 (540)
                                                   +|.+...+....+.+|+.++|.|.+.|.|.|.++|+|+|..+..+.+..+ 
T Consensus       294 -----------------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~  344 (382)
T 1cs6_A          294 -----------------------------QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS  344 (382)
T ss_dssp             -----------------------------EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE
T ss_pred             -----------------------------CCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE
Confidence                                         77777777778899999999999999999999999999999887654322 


Q ss_pred             -------EEEecCCeEEEEEEeeeeeee
Q psy670          504 -------HIEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       504 -------~~~~~~~g~y~c~~~~~~~~~  524 (540)
                             .+...|.|.|+|.+.+.....
T Consensus       345 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  372 (382)
T 1cs6_A          345 GGELRFSKLVLEDSGMYQCVAENKHGTV  372 (382)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCEEEECcCCcccCEEEEEEEEeCCCeE
Confidence                   344578999999998655443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1e-38  Score=312.44  Aligned_cols=335  Identities=17%  Similarity=0.245  Sum_probs=245.6

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCC------CeEEEEEEEc
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD------GGNYRCNACN  184 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d------~G~Y~C~~~~  184 (540)
                      ..+.+|+.++|.|.+.|.|.+.+.|+| +|..+....+.....    .+.   +|.|.+++.+|      +|.|+|.+.|
T Consensus        14 ~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~----~~~---~L~i~~~~~~d~~~~~d~G~Y~C~a~n   86 (388)
T 2v5m_A           14 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS----SDG---KLVFPPFRAEDYRQEVHAQVYACLARN   86 (388)
T ss_dssp             EEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC----STT---EEEECCCCGGGCCHHHHEEEEEEEEEE
T ss_pred             EEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc----CCc---eEEecccChhhccccccCceEEEEEEc
Confidence            457799999999999999999999999 787775433322211    111   79999999987      9999999999


Q ss_pred             CCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeecc-----CceE
Q psy670          185 SIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKES-----SKIK  255 (540)
Q Consensus       185 ~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~-----~~~~  255 (540)
                      ..|.. +..+.|.+..       +|.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+...     .+..
T Consensus        87 ~~g~~~s~~~~v~v~~-------~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~  159 (388)
T 2v5m_A           87 QFGSIISRDVHVRAVV-------AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL  159 (388)
T ss_dssp             TTEEEECCCEEEEEEC-------CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEE
T ss_pred             cCCeEEecceEEEEcc-------ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEE
Confidence            98864 4566666654       444555556677889999999999987643   689999998776432     1221


Q ss_pred             EEEecCCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCeee-e---EEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeE
Q psy670          256 IIVNEQDDTYEIICEITDPIGPDS-GTYRCNVKNEFGESNA-N---LNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLV  329 (540)
Q Consensus       256 ~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~-~---~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v  329 (540)
                      .  ...     ..|.|.+++.+|. |.|+|.+.+..+.... .   ..+.|.....  ...|.+. .......+.+|+.+
T Consensus       160 ~--~~~-----~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~v~~G~~v  230 (388)
T 2v5m_A          160 V--LPS-----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS--SSAPRTPALVQKPLELMVAHTI  230 (388)
T ss_dssp             E--CTT-----SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS--CEEEECCSSCCCCEEEETTSCE
T ss_pred             E--ccC-----CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc--CCCCcCccccCCceEEeeCCcE
Confidence            1  111     1699999999999 9999999987543221 1   2344443110  0011110 01223457789999


Q ss_pred             EEEEEEEccCCCeEEEEECCEEcc------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          330 VMECKVKAKPMPEIVWFHEGKELQ------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       330 ~l~C~~~~~p~~~i~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      .|.|.+.|.|.+.+.|++++..+.      ...+..    ..+.    .|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus       231 ~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  302 (388)
T 2v5m_A          231 SLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK----QVSG----TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL  302 (388)
T ss_dssp             EECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE----EETT----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEecCCCCcccccccccCcee----cccC----EEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence            999999999999999999754322      122221    1122    79999999999999999999999998888899


Q ss_pred             EEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC
Q psy670          404 NIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE  483 (540)
Q Consensus       404 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~  483 (540)
                      .|..                                              +|.+...+....+.+|+.++|.|.+.|.|.
T Consensus       303 ~V~~----------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  336 (388)
T 2v5m_A          303 TVTA----------------------------------------------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPI  336 (388)
T ss_dssp             EEEE----------------------------------------------EEEEEEESSEEEECTTSCEEEEEEEEEECC
T ss_pred             EEeC----------------------------------------------CCccccCCCcEEecCCCCEEEEEEeccccC
Confidence            8887                                              666666667788999999999999999999


Q ss_pred             CceEEEecCeecCCCCeEEE--EEEecCCeEEEEEEeeeeee
Q psy670          484 PSVTWMKEKNTVKEDNKHVV--HIEQVKDVSMNFELWLGIVE  523 (540)
Q Consensus       484 ~~v~W~~~~~~l~~~~~~~~--~~~~~~~g~y~c~~~~~~~~  523 (540)
                      |.|+|+|+|..+..+.....  .+...|.|.|+|.+.+..-+
T Consensus       337 p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  378 (388)
T 2v5m_A          337 KTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES  378 (388)
T ss_dssp             CEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCc
Confidence            99999999999976644222  35567899999999875443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=318.34  Aligned_cols=346  Identities=12%  Similarity=0.139  Sum_probs=234.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ++.+.+|++++|.|.+.+.|..++.|++++..+.....+..      .+....+|.|.+++.+|+|.|+|.+.+..+...
T Consensus        57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~------~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~  130 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQSEATNYT  130 (527)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCC------CcceEEEEEECcCChhhCeeEEEEEEeccccEE
Confidence            57789999999999998888889999999987765444322      122334799999999999999999999888777


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|..        ..+...........|+.+.|.|.+.|+|.+.+.|++++..+.......        .......
T Consensus       131 ~~~~v~v~~--------~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~--------~~~~~~~  194 (527)
T 3qs9_E          131 ILFTVSIRN--------TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES--------PAVVKKE  194 (527)
T ss_dssp             EEEEEEEC-------------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC---------------------CEEEC
T ss_pred             EEEEEEECC--------ceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccC--------CcEEEEe
Confidence            777776652        111111112223346677899999999999999999887653211000        0001122


Q ss_pred             EeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEEC
Q psy670          271 ITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHE  348 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~  348 (540)
                      ...+...|+|.|+|.|.|..|..... +.+.|..       +|.+  .+....+.+|+.+.|.|.+. +.|.+.|.|+++
T Consensus       195 ~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~-------~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~  265 (527)
T 3qs9_E          195 EKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ-------TPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE  265 (527)
T ss_dssp             CSEECCCCSSCEEEEEECSSCEEEEECEEEESSS-------CCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECS
T ss_pred             eeeccccCCEEEEEEEEeCCCcccceEEEEEEec-------cCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEEC
Confidence            23344789999999999998876543 4555543       2222  34466788999999999997 899999999999


Q ss_pred             CEEccCCCceEEEEEecCC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeee
Q psy670          349 GKELQQTDRISWNVTLKGD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMG  426 (540)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~  426 (540)
                      |..+.............+.  ....+|.|.+++.+|+|.|+|.|.|.   ...++.|.|..                   
T Consensus       266 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~-------------------  323 (527)
T 3qs9_E          266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE-------------------  323 (527)
T ss_dssp             SSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--------------------
T ss_pred             CEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEc-------------------
Confidence            9887665433222222221  12336999999999999999999997   56677777776                   


Q ss_pred             eeeecccccccccCcccccceeeeeeeeceeecCC--cEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe----
Q psy670          427 LVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVP--KVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK----  500 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~--~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~----  500 (540)
                                                 +|.+...+  ....+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+..    
T Consensus       324 ---------------------------~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~  376 (527)
T 3qs9_E          324 ---------------------------KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN  376 (527)
T ss_dssp             ----------------------------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSS
T ss_pred             ---------------------------cCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccC
Confidence                                       55444332  356778899999999999999999999999998865431    


Q ss_pred             -EEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670          501 -HVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP  537 (540)
Q Consensus       501 -~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~  537 (540)
                       ..+   .+...|.|.|+|.+......... ...+.+..+|
T Consensus       377 ~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~-~~~L~V~~~P  416 (527)
T 3qs9_E          377 GYSISKFCNHKHQPGEYIFHAENDDAQFTK-MFTLNIRRKP  416 (527)
T ss_dssp             SSEEEEECCCTTCCSCEEEEEEETTEEEEE-EEEEC--CCC
T ss_pred             CcEEEEecCCcccCEEEEEEEEeCCCcEEE-EEEEEEecCC
Confidence             222   45567899999999875544333 3444444444

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=8.8e-39  Score=313.67  Aligned_cols=344  Identities=19%  Similarity=0.276  Sum_probs=247.8

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.++|.|.+.+ .|.+.+.|+|+|..+..........   ..+   .+|.|.+++.+|+|.|+|.+.|..|..
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~---~~~---~~L~i~~~~~~D~G~Y~C~a~n~~g~~   88 (395)
T 1bih_A           15 EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR---KDE---GSLVFLRPQASDEGHYQCFAETPAGVA   88 (395)
T ss_dssp             EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC---TTS---CCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEe---cCC---ceEEEecCCCCCCcEEEEEEEeCCCeE
Confidence            356789999999999988 7889999999999886654311111   111   179999999999999999999988765


Q ss_pred             E-EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCE---Eeec----cCceEEEEec
Q psy670          190 N-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADK---LVKE----SSKIKIIVNE  260 (540)
Q Consensus       190 ~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~---~l~~----~~~~~~~~~~  260 (540)
                      . ..+.|.|....     .|.+  .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   +...    ..+...  ..
T Consensus        89 ~s~~~~l~v~~~~-----~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~  159 (395)
T 1bih_A           89 SSRVISFRKTYLI-----ASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA--GP  159 (395)
T ss_dssp             ECCCEEEEEEEEE-----CCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE--CT
T ss_pred             EeEEEEEEEEEee-----cCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE--cC
Confidence            3 33555544321     2222  2345667799999999996 778999999999862   1111    112111  11


Q ss_pred             CCCeEEEEEEEeCCCCCCcE---EEEEEEEcCCCCeeeeEEEEEeeccCC------CCCCCeEEeCCceEEeeCCCeEEE
Q psy670          261 QDDTYEIICEITDPIGPDSG---TYRCNVKNEFGESNANLNLNIEAEAEP------EGDPPTFIEKPKIRSEQGGKLVVM  331 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~l~v~~~~~~------~~~~p~~~~~~~~~~~~~g~~v~l  331 (540)
                      . +    .|.|.+++.+|+|   .|+|.+.+..+...............+      ...+|.+  .+....+.+|+.+.|
T Consensus       160 ~-~----~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l  232 (395)
T 1bih_A          160 D-G----NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMI  232 (395)
T ss_dssp             T-S----CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEE
T ss_pred             C-C----cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEE
Confidence            1 1    5889999999999   999999998887544333222111100      0112333  245667889999999


Q ss_pred             EEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE-EEEEEEEEEEE
Q psy670          332 ECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA-NLTLNIEMVRF  410 (540)
Q Consensus       332 ~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~  410 (540)
                      .|.+.|.|.+.+.|+++|..+...............  ...|.|.+++.+|+|.|+|.|.|..|.... ++.|.|..   
T Consensus       233 ~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~---  307 (395)
T 1bih_A          233 YCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS---  307 (395)
T ss_dssp             EEEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE---
T ss_pred             EEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCC--CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc---
Confidence            999999999999999999988764433222111111  117999999999999999999999988654 88888887   


Q ss_pred             EEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcE-EEecCCCeEEEEEEEeeecCCceEEE
Q psy670          411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKV-VTISKKKTVVIECKVMSMYEPSVTWM  489 (540)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~-~~~~~g~~~~l~C~v~g~p~~~v~W~  489 (540)
                                                                 +|.+...+.. ..+.+|+.++|.|.+.|.|.|.++|+
T Consensus       308 -------------------------------------------~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~  344 (395)
T 1bih_A          308 -------------------------------------------APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS  344 (395)
T ss_dssp             -------------------------------------------EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEE
T ss_pred             -------------------------------------------CCccccCCCcceEecCCCeEEEEEEECcccCCeeEEE
Confidence                                                       7777766665 78899999999999999999999999


Q ss_pred             ecCeecCCCCeE----EE---EEEecCCeEEEEEEeeeeeee
Q psy670          490 KEKNTVKEDNKH----VV---HIEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       490 ~~~~~l~~~~~~----~~---~~~~~~~g~y~c~~~~~~~~~  524 (540)
                      ++|..+..+...    .+   .+...|.|.|+|.+.+.....
T Consensus       345 ~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  386 (395)
T 1bih_A          345 HNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK  386 (395)
T ss_dssp             ETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             ECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCc
Confidence            999998754211    12   345578999999998755443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=5.9e-37  Score=316.53  Aligned_cols=360  Identities=15%  Similarity=0.249  Sum_probs=252.1

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecc-------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLK-------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKV   73 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   73 (540)
                      .+.|.+.|.|+     .+.+.|+|++..+.             ...++.+......   ...++|.|.+++.+|+|.|+|
T Consensus       131 ~l~C~~~~~~~-----~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C  202 (585)
T 2ocw_A          131 TINCPFKTENA-----QKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG---QLLFSVVINQLRLSDAGQYLC  202 (585)
T ss_pred             EEEEEecCCCC-----CccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCC---CcEEEEEEccCChhHCeEEEE
Confidence            36698886553     17899999986421             1234444332221   123589999999999999999


Q ss_pred             EEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCC---CceEEE-eCCEe----ecC
Q psy670           74 IAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPM---PDIIWY-QGTKV----IED  145 (540)
Q Consensus        74 ~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~-~~~~~----~~~  145 (540)
                      .+.|..+.....+.|.|...+              .....+.+|+.+.|.|.+ +.+.   +.+.|+ ++|..    +..
T Consensus       203 ~a~n~~g~~~~~~~l~V~~~~--------------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~  267 (585)
T 2ocw_A          203 QAGDDSNSNKKNADLQVLKPE--------------PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNT  267 (585)
T ss_pred             EeccCCccccceEEEEEccCC--------------CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeC
Confidence            999999888888888886533              122356799999999998 4444   578886 77732    111


Q ss_pred             --------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee----EEEEEEEEecCcCCCCCCCeeccC
Q psy670          146 --------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES----NANIALNFQGGENGAGFAPSFIEK  213 (540)
Q Consensus       146 --------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~  213 (540)
                              ..++.+...   .......|.|.+++.+|+|.|+|.+.|..+..    ...+.|.|..       +|.+...
T Consensus       268 ~~~~~~~~~~~~~~~~~---~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~-------~p~~~~~  337 (585)
T 2ocw_A          268 LGKRAPAFEGRILLNPQ---DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE-------ESTIPRS  337 (585)
T ss_pred             CCcCCcccCCceEeecc---CCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec-------ccccccC
Confidence                    222222211   11233479999999999999999999953333    2777888875       5666666


Q ss_pred             CceeecCCCCeEEEEEEecccCCCeE----EEEe--CCE--Eeecc---------CceEEEEecCCCeEEEEEEEeCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEV----KWFK--ADK--LVKES---------SKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~~~--~l~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      +....+.+|+.+.|.|.+.+.|.+.+    .|++  +|.  .+...         .+..+..  .......+|.|.+++.
T Consensus       338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~--~~~~g~~~L~I~~v~~  415 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE--EPGNGTFTVILNQLTS  415 (585)
T ss_pred             CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec--cCCCcEEEEEECCCCh
Confidence            77778889999999999999998876    7999  886  44322         1222211  1112224699999999


Q ss_pred             CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE----ccCCCeEEEEECCEEc
Q psy670          277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK----AKPMPEIVWFHEGKEL  352 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~----~~p~~~i~W~~~~~~~  352 (540)
                      +|+|.|+|.| |..|.....+.|.|...      +|.+ ..+....+.+|+.+.|.|.+.    +.|.+.|.|+++|..+
T Consensus       416 ~D~G~Y~C~a-n~~g~~~~~~~l~V~~~------~p~~-~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~  487 (585)
T 2ocw_A          416 RDAGFYWCLT-NGDTLWRTTVEIKIIEG------EPNL-KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQA  487 (585)
T ss_pred             hhCEEEEEcc-cCCCccceeEEEEEecC------cccc-ccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCcee
Confidence            9999999999 88888777888888653      2222 235667788999999999997    6678899999999877


Q ss_pred             cCCCceE--E-EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEEEEEE
Q psy670          353 QQTDRIS--W-NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNIEMVR  409 (540)
Q Consensus       353 ~~~~~~~--~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~  409 (540)
                      .......  . ............|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          488 LPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             eeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            5432110  0 01112222334899999999999999999999998654 44888887743

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=5.5e-37  Score=312.09  Aligned_cols=366  Identities=13%  Similarity=0.145  Sum_probs=237.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEE-ecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeee
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTL-VQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST   85 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~   85 (540)
                      .+.|.+.|.|+    |.+.|.|+|||.++..+.++.... ..++ .....+.|.|.+++.+|+|.|+|.|.|..+....+
T Consensus       133 ~l~C~~~g~~p----~~~~v~W~k~g~~l~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  207 (523)
T 2rcj_C          133 TLVCLISDFYP----GAVTVAWKADGSPVKAGVETTKPSKQSNN-KYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  207 (523)
T ss_pred             EEEEEeccccC----CceEEEEecCCCCCCCceEeccccccCCC-CEEEEEEEEEechhcCCCceEEEEEEecCcccccc
Confidence            36799998875    124999999999887554332211 1222 33345689999999999999999999988766555


Q ss_pred             EEEEEee-cCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEE
Q psy670           86 VNLNFSE-EDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYL  162 (540)
Q Consensus        86 ~~l~v~~-~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (540)
                      +.+.+.. ....+.+..      ......+.+|+.+.|.|.+.|. |.+ .|.|+++|..+......... ...+.....
T Consensus       208 ~~~~~~~~~~~~P~v~~------~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~-~~~g~~~~~  280 (523)
T 2rcj_C          208 VAPTECSASTKGPSVFP------LAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLS  280 (523)
T ss_pred             eeeeecCCCCcCCEEEe------cCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEe-cCCCcEEEE
Confidence            5433211 110111110      0112245789999999999876 777 89999999875321111111 111222335


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCee-ccCCceee-cCCCCeEEEEEEecccCC----
Q psy670          163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSF-IEKPRIIP-NESGTLIQMKCKCSAKPR----  236 (540)
Q Consensus       163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~----  236 (540)
                      +.|.|.++..+| |.|+|.|.|..|.......|.+..       .|.+ ...+.... +.+|+.+.|.|.+.+.|+    
T Consensus       281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~-------~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~  352 (523)
T 2rcj_C          281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS-------LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQ  352 (523)
T ss_pred             EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc-------CceEEecCCCchhhcccCCceEEEEEEecccCCCCc
Confidence            689999999999 999999999998876666665543       2333 33333333 678999999999998643    


Q ss_pred             CeEEEEeCCEEeeccCceEEEEec-CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE
Q psy670          237 PEVKWFKADKLVKESSKIKIIVNE-QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI  315 (540)
Q Consensus       237 ~~v~W~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~  315 (540)
                      +.|.|+++|..+............ ......+.|.|.++..+|+|.|+|.|.|..+.......+.+...   ...+|.+.
T Consensus       353 ~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~---~~~~P~v~  429 (523)
T 2rcj_C          353 VKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKG---QPREPQVY  429 (523)
T ss_pred             eEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccC---CCCCCEEE
Confidence            489999999988655432211111 11233457899999999999999999998776544444443110   01255554


Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      ..+.......+..+.|.|.+.|.|++  .+.|+++|..+............++.. ..+.|.+.....+|+|.|+|.|.|
T Consensus       430 ~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n  509 (523)
T 2rcj_C          430 TLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH  509 (523)
T ss_pred             EeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEc
Confidence            43322222234459999999997665  899999999987543322222223322 234677777777889999999999


Q ss_pred             CCe
Q psy670          393 FHG  395 (540)
Q Consensus       393 ~~g  395 (540)
                      ...
T Consensus       510 ~~l  512 (523)
T 2rcj_C          510 EAL  512 (523)
T ss_pred             CCc
Confidence            764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.2e-37  Score=307.83  Aligned_cols=329  Identities=15%  Similarity=0.232  Sum_probs=223.8

Q ss_pred             ccceeeeCcceeEEeecc---eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee
Q psy670            7 LKSYTLEGEPTKQIEANF---QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS   83 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~---~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~   83 (540)
                      .+.|.+.|.|+      +   .|.|+|+|.++..+....     +.    ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus       105 ~L~C~~~g~~~------~~~~~v~W~k~g~~l~~~~~~~-----~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  169 (450)
T 1z7z_I          105 TLRCQVEGGAP------RANLTVVLLRGEKELKREPAVG-----EP----AEVTTTVLVRRDHHGANFSCRTELDLRPQG  169 (450)
T ss_dssp             EEEEEEECCBC------GGGEEEEEEETTEEEEEEECCT-----TT----EEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             EEEEEecCCCC------CcCcEEEEeeCCEEeecccccc-----cc----cceEEEEEeeccccCceEEEEEEcccCCCC
Confidence            36799999887      6   899999999886433211     11    236899999999999999999999877543


Q ss_pred             eeEEEEEeecCCccccCC--CCCCCCCCCCccccCCCeEEEEEEEeec-C--CCceEEEeCCEeecCCCceEEEEeecCc
Q psy670           84 STVNLNFSEEDGKLKVPG--GKAPRFPKKPTIHQDGDLLVMECVLEAS-P--MPDIIWYQGTKVIEDTGRIKMSKKSIGK  158 (540)
Q Consensus        84 ~~~~l~v~~~~~~~~i~~--~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p--~~~v~W~~~~~~~~~~~~~~~~~~~~~~  158 (540)
                      ..+.+.+.... .+.+..  ..+|.+. .+..+.+|+.+.|.|.+.|. |  .+.+.|++++..+..  +....     .
T Consensus       170 ~~~~~~~s~~~-~l~v~~~~~~~p~~~-~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~-----~  240 (450)
T 1z7z_I          170 LELFENTSAPY-QLQTFVLPATPPQLV-SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYG-----N  240 (450)
T ss_dssp             SCEEEEECCCE-ECEECCCCSSCCEEE-CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEE-----T
T ss_pred             ceEEeeccCcc-ceeeeccCCCCCEec-CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEec-----C
Confidence            22222221111 111111  0112111 12568899999999999888 7  679999999998865  22211     1


Q ss_pred             ceEEEEEEEcCCCCCCCe--EEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670          159 DTYLLRLEINNPTKDDGG--NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR  236 (540)
Q Consensus       159 ~~~~~~L~i~~~~~~d~G--~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  236 (540)
                      +.....+.+ +++.+|+|  .|+|.+.|..+.....+.|.|...+     +|.+...  ...+.+|+.+.|.|.+.  |.
T Consensus       241 ~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~-----~p~i~~~--~~~v~~G~~v~l~C~~~--p~  310 (450)
T 1z7z_I          241 DSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-----APNVILT--KPEVSEGTEVTVKCEAH--PR  310 (450)
T ss_dssp             TEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC-----CCEEEES--CSEEETTCEEEEEEEC-----
T ss_pred             CceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC-----CCeEecC--CeeEeCCCcEEEEEecC--CC
Confidence            222223344 77899999  9999999999988888888887532     3444332  34677899999999998  88


Q ss_pred             CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC-C---eeeeEEEEEeeccCCCCCCC
Q psy670          237 PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG-E---SNANLNLNIEAEAEPEGDPP  312 (540)
Q Consensus       237 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~---~~~~~~l~v~~~~~~~~~~p  312 (540)
                      +.+.|  +|..+....        .    ...|.|.++..+|+|.|+|.|.|..+ .   ....+.|.|..       +|
T Consensus       311 p~i~W--~g~~~~~~~--------~----~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~-------~P  369 (450)
T 1z7z_I          311 AKVTL--NGVPAQPLG--------P----RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-------GP  369 (450)
T ss_dssp             ---------------C--------C----CCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEE-------EE
T ss_pred             CEeEE--CCEEcCCCC--------c----eEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEec-------CC
Confidence            89999  676652111        0    12688999999999999999997655 2   33566777766       33


Q ss_pred             eEEeC--CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          313 TFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       313 ~~~~~--~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .+...  +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...          +.    .+   .++.+|+|.|+|.|
T Consensus       370 ~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~----------g~----~~---~v~~~d~G~Y~C~a  432 (450)
T 1z7z_I          370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------GE----SV---TVTRDLEGTYLCRA  432 (450)
T ss_dssp             ECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT----------TS----CE---ECCGGGCEEEEEEE
T ss_pred             ceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC----------CC----eE---eEehhhCeEEEEEE
Confidence            33333  35667889999999999999999999999998744322          21    22   46789999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus       433 ~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          433 RSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCceeEEEEEEEEc
Confidence            99999999999998864

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=2.4e-37  Score=307.82  Aligned_cols=368  Identities=14%  Similarity=0.185  Sum_probs=236.7

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eec------------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLL------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK   72 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   72 (540)
                      .+.|.+.|.|..  ...+.+.|||++  ..+            ....++.+.....      ..+|.|.+++.+|+|.|+
T Consensus        20 ~L~C~~~~~~~~--~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~   91 (438)
T 1qgc_4           20 TISCRASESVDS--SGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRT------DFTLTIDPVEADDVATYY   91 (438)
T ss_dssp             EEEEEESSCCEE--TTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCccc--CCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCC------cEEEEeCCCcCcCCeeEE
Confidence            367998888850  001389999974  322            1234565544222      368999999999999999


Q ss_pred             EEEEccCcce-eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee-cCCC-ceEEEeCCEeecCCCce
Q psy670           73 VIAKNKNGEG-SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA-SPMP-DIIWYQGTKVIEDTGRI  149 (540)
Q Consensus        73 C~~~~~~~~~-~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~  149 (540)
                      |.+.|..+.. ...+.|.|.....++.+.      .........+|+.+.|.|.+.+ .|.+ .+.|+|+|..+......
T Consensus        92 C~a~n~~~~~~~~~~~l~V~~~~~~P~v~------~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  165 (438)
T 1qgc_4           92 CQQSNEVPLTFGAGTKLDLKRADAAPTVS------IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  165 (438)
T ss_dssp             EEECSSTTCCBCCCEEEEECCCCBCCEEE------EECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             EEEecCCCccccCceeEEecCCCCCCEEE------ecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCcee
Confidence            9999987643 345666664322111111      0011122346889999999977 6777 89999999988654111


Q ss_pred             EEEEe--ecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEE
Q psy670          150 KMSKK--SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM  227 (540)
Q Consensus       150 ~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  227 (540)
                      .....  ..+.....+.|.|.++..+|+|.|+|.+.|..+.......+.+..       .+.....+....+.+|+.+.|
T Consensus       166 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~G~~v~L  238 (438)
T 1qgc_4          166 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE-------CEVMLVESGGGLVKPGGSLKL  238 (438)
T ss_dssp             EEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC--------CCEEEEECCEEECTTCCEEE
T ss_pred             ccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccccc-------ceeEEecCCceEEecCCcEEE
Confidence            11111  111122245899999999999999999999887653333332211       122222344566889999999


Q ss_pred             EEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          228 KCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       228 ~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .|.+.+.|  .+.+.|+++  +..+.                 ...++.......  .....|.|.+++.+|+|.|+|.|
T Consensus       239 ~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a  316 (438)
T 1qgc_4          239 SCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNA--KNTLYLQMSSLRSADTAMYYCVR  316 (438)
T ss_dssp             EEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETT--TTEEEEEECSCCGGGCCEEEEEE
T ss_pred             EEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecC--CCeEEEEECCCChhhCEEEEEEE
Confidence            99999987  678999996  44332                 112333322211  22347999999999999999999


Q ss_pred             EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceE
Q psy670          287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRIS  359 (540)
Q Consensus       287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~  359 (540)
                      .|..+     .......+.|...+   ..+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+++|..+.......
T Consensus       317 ~n~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~  393 (438)
T 1qgc_4          317 REDGGDEGFAYWGQGTVVTVSAAK---TTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA  393 (438)
T ss_dssp             CCSSSCCCCCSBCCCEEEEECSSC---CBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC
T ss_pred             EccCCCccceeeCCCEEEEEecCC---CCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc
Confidence            98443     22234566665421   124554433323346689999999999997 887 999999998765321111


Q ss_pred             EEEEecC-CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          360 WNVTLKG-DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       360 ~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      .  ...+ ....+.|.|.++..+| |.|+|.|.|..|.......|
T Consensus       394 ~--~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i  435 (438)
T 1qgc_4          394 V--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  435 (438)
T ss_dssp             E--EETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred             c--ccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence            1  1222 1223479999888888 99999999999876655544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=6.8e-38  Score=303.36  Aligned_cols=311  Identities=14%  Similarity=0.170  Sum_probs=225.8

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeeccc--------------CCceEEEEec-CccceeeEEEEEEcccccCCCeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKM--------------SDRLSSTLVQ-DQSRLYYLAVLTIKNVQKSDSGEY   71 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~--------------~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y   71 (540)
                      .+.|.+.|.|.      +.+.|+|++..+..              ..|+.+.... +    ....+|.|.+++.+|+|.|
T Consensus        13 ~L~C~~~~~p~------~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A           13 ELTCTASQKKS------IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD----QGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EECCCCTTCSS------CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHH----TTCCCEEECSCCGGGCEEE
T ss_pred             EEEEEecCCCc------eEEEEEeCCccceeccCccEEecCCcccccceeeeecccc----CCeEEEEECCCCHHHCEEE
Confidence            46799888888      99999999864221              1222211000 0    0135799999999999999


Q ss_pred             EEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEE
Q psy670           72 KVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM  151 (540)
Q Consensus        72 ~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~  151 (540)
                      +|.+.|..    ..+.|.|....    +.    +     ...+.+|++++|.|.+.+.|.+.+.|++++..+..      
T Consensus        83 ~C~~~n~~----~~~~l~V~~~~----~~----~-----~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------  139 (363)
T 1wio_A           83 ICEVEDQK----EEVQLLVFGLT----AN----S-----DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------  139 (363)
T ss_dssp             EEEETTEE----EEEEEEEEEEE----ES----S-----CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------
T ss_pred             EEEEEECC----CcEEEEEEeCC----CC----C-----ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------
Confidence            99998864    35566665311    11    1     12568999999999998899999999998754311      


Q ss_pred             EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe
Q psy670          152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC  231 (540)
Q Consensus       152 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~  231 (540)
                       .        ...|.|.+++.+|+|.|+|.+.+..+.....+.+.|..       .|..   +....+.+|+.+.|.|.+
T Consensus       140 -~--------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~-------~p~~---~~~~~~~~G~~v~l~C~~  200 (363)
T 1wio_A          140 -G--------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA-------FQKA---SSIVYKKEGEQVEFSFPL  200 (363)
T ss_dssp             -E--------SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC-------CSCS---EEEEEEETBCCEEEECCC
T ss_pred             -c--------ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec-------CCCC---CCceEEecCCEEEEEEEE
Confidence             0        12899999999999999999998877767767777664       2221   245667789999999988


Q ss_pred             cc-----cCCCeEEEEeCCEEeec--------cCceEEEEecC------CCeEEEEEEEeCCCCCCcEEEEEEEEcC--C
Q psy670          232 SA-----KPRPEVKWFKADKLVKE--------SSKIKIIVNEQ------DDTYEIICEITDPIGPDSGTYRCNVKNE--F  290 (540)
Q Consensus       232 ~~-----~p~~~v~W~~~~~~l~~--------~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~  290 (540)
                      .+     +|.+.+.|+++|..+..        .....+.....      .......|.|.+++.+|+|.|+|.|.|.  .
T Consensus       201 ~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  280 (363)
T 1wio_A          201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT  280 (363)
T ss_dssp             CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred             ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence            77     77889999999987765        22322221100      0111237999999999999999999999  8


Q ss_pred             CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCe--EEEEECCEEccCCCceEEEEEecCCe
Q psy670          291 GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE--IVWFHEGKELQQTDRISWNVTLKGDK  368 (540)
Q Consensus       291 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~  368 (540)
                      |.....+.|.|...                    .|+.+.|.|.+.+.|.|.  +.|+++|..+....            
T Consensus       281 g~~~~~~~l~V~~v--------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~------------  328 (363)
T 1wio_A          281 GKLHQEVNLVVMRA--------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK------------  328 (363)
T ss_dssp             CCEEEEEEEEEEEE--------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEE------------
T ss_pred             CeEEEEEeEEEEEe--------------------cCCCeeEEEEEccccCCCccEEEEeCCCceeeee------------
Confidence            88777777777531                    288899999999999887  99999997765311            


Q ss_pred             eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                         .|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus       329 ---~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          329 ---REKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             ---SSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             ---eeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence               4677888999999999999965 44555555554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=100.00  E-value=1.1e-37  Score=301.81  Aligned_cols=308  Identities=14%  Similarity=0.173  Sum_probs=224.9

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecC--------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED--------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++++|.|.+.+.|.+.+.|+|++..+..              ..++.+.....  .....+|.|.+++.+|+|.
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW--DQGNFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHH--HTTCCCEEECSCCGGGCEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccc--cCCeEEEEECCCCHHHCEE
Confidence            4578999999999998889999999999854211              01111100000  1112379999999999999


Q ss_pred             EEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670          178 YRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII  257 (540)
Q Consensus       178 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~  257 (540)
                      |+|.+.+..+    .+.|.|...          ...+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....     
T Consensus        82 Y~C~~~n~~~----~~~l~V~~~----------~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----  141 (363)
T 1wio_A           82 YICEVEDQKE----EVQLLVFGL----------TANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-----  141 (363)
T ss_dssp             EEEEETTEEE----EEEEEEEEE----------EESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEES-----
T ss_pred             EEEEEEECCC----cEEEEEEeC----------CCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccc-----
Confidence            9999987643    455555531          1111 2345689999999999999999999999876542111     


Q ss_pred             EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc
Q psy670          258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA  337 (540)
Q Consensus       258 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~  337 (540)
                               ..|.|.+++.+|+|.|+|.+.+..+.....+.+.|...+       ..   +....+.+|+.+.|.|.+.+
T Consensus       142 ---------~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p-------~~---~~~~~~~~G~~v~l~C~~~~  202 (363)
T 1wio_A          142 ---------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ-------KA---SSIVYKKEGEQVEFSFPLAF  202 (363)
T ss_dssp             ---------SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCS-------CS---EEEEEEETBCCEEEECCCCC
T ss_pred             ---------eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCC-------CC---CCceEEecCCEEEEEEEEec
Confidence                     279999999999999999999876665555666665422       11   14556788999999998877


Q ss_pred             -----cCCCeEEEEECCEEccC--------CCceEEEEEecC------CeeEEEEEEcCCCCCCCeeEEEEEEcC--Cee
Q psy670          338 -----KPMPEIVWFHEGKELQQ--------TDRISWNVTLKG------DKYHIRLEVKDPRKEDTGLYKCNIKNF--HGE  396 (540)
Q Consensus       338 -----~p~~~i~W~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~  396 (540)
                           .|.+.+.|+++|..+..        ...+........      ......|.|.+++.+|+|.|+|.|.|.  .|.
T Consensus       203 ~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~  282 (363)
T 1wio_A          203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK  282 (363)
T ss_dssp             CCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred             ccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence                 77889999999988765        333322211100      000127999999999999999999999  898


Q ss_pred             eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEE
Q psy670          397 LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIEC  476 (540)
Q Consensus       397 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C  476 (540)
                      ....+.|.|..                                              .             .|+.++|.|
T Consensus       283 ~~~~~~l~V~~----------------------------------------------v-------------~g~~~~l~C  303 (363)
T 1wio_A          283 LHQEVNLVVMR----------------------------------------------A-------------TQLQKNLTC  303 (363)
T ss_dssp             EEEEEEEEEEE----------------------------------------------E-------------CCCSSSEEE
T ss_pred             EEEEEeEEEEE----------------------------------------------e-------------cCCCeeEEE
Confidence            88877777654                                              1             188899999


Q ss_pred             EEeeecCCc--eEEEecCeecCCCCe-EEEEEEecCCeEEEEEEee
Q psy670          477 KVMSMYEPS--VTWMKEKNTVKEDNK-HVVHIEQVKDVSMNFELWL  519 (540)
Q Consensus       477 ~v~g~p~~~--v~W~~~~~~l~~~~~-~~~~~~~~~~g~y~c~~~~  519 (540)
                      .+.|.|+|.  ++|+|+|..+..+.. ....+...|.|.|+|.+..
T Consensus       304 ~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~  349 (363)
T 1wio_A          304 EVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSD  349 (363)
T ss_dssp             EEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEEEEEECS
T ss_pred             EEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeEEEEEec
Confidence            999999987  999999998865432 3446788899999999994

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=5.3e-35  Score=273.04  Aligned_cols=269  Identities=23%  Similarity=0.426  Sum_probs=222.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.++|.|.+.+.|.+.+.|+|++..+....+.......     ....|.|.+++.+|+|.|+|.+.|..+...
T Consensus        14 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~   88 (284)
T 2rik_A           14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTCYASNVAGKDS   88 (284)
T ss_dssp             CEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEET-----TEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcC-----CEEEEEEecCCcccCEEEEEEEEECCceEE
Confidence            456789999999999999999999999999998777665544221     124899999999999999999999998888


Q ss_pred             EEEEEEEecCcCCCCCCCeeccC-CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      ..+.|.|..       +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............    ...|
T Consensus        89 ~~~~l~V~~-------~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~L  157 (284)
T 2rik_A           89 CSAQLGVQE-------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVL  157 (284)
T ss_dssp             EEEEEEEEC-------CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETT----EEEE
T ss_pred             EEEEEEccC-------CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCC----EEEE
Confidence            888888875       5555433 334567789999999999999999999999999988766655443321    2479


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG  349 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~  349 (540)
                      .|.+++.+|+|.|+|.+.|..|.....+.|.|..       +|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++
T Consensus       158 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~  230 (284)
T 2rik_A          158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK  230 (284)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred             EECCCCcccCEEEEEEEEcCCCceeEEEEEEEec-------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence            9999999999999999999999888888888876       556655666677889999999999999999999999999


Q ss_pred             EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          350 KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      ..+....++....  ++.  ...|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       231 ~~~~~~~~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          231 RELRSGKKYKIMS--ENF--LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEECBTTTEEEEE--ETT--EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EECcCCCCEEEEE--cCC--EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            9998777655432  222  3389999999999999999999999999999988875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.9e-34  Score=268.01  Aligned_cols=259  Identities=23%  Similarity=0.445  Sum_probs=214.6

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.|.      +.+.|+|+|..+..+.++++....+.      .+|.|.+++.+|+|.|+|.+.|..|..+..+.
T Consensus        25 l~C~~~g~p~------~~v~W~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~   92 (284)
T 2rik_A           25 FKCHVTGTAP------IKITWAKDNREIRPGGNYKMTLVENT------ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ   92 (284)
T ss_dssp             EEEEEESSSC------CEEEEEETTEECCSSSSEEEEEETTE------EEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEcCCC------CEEEEEECCEECcCCCcEEEEEcCCE------EEEEEecCCcccCEEEEEEEEECCceEEEEEE
Confidence            5699999887      89999999999988888887765443      69999999999999999999999988888888


Q ss_pred             EEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670           88 LNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus        88 l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      |.|...+..+. .       ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.......     ....|.|
T Consensus        93 l~V~~~p~~~~-~-------~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i  159 (284)
T 2rik_A           93 LGVQEPPRFIK-K-------LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVE-----SVAVLEM  159 (284)
T ss_dssp             EEEECCCEEEE-C-------CCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEET-----TEEEEEE
T ss_pred             EEccCCCcccc-c-------CCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcC-----CEEEEEE
Confidence            88876552111 1       122346789999999999999999999999999998776655543221     1348999


Q ss_pred             cCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEE
Q psy670          168 NNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKL  247 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~  247 (540)
                      .+++.+|+|.|+|.+.|..|.....+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~  232 (284)
T 2rik_A          160 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE  232 (284)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEE
T ss_pred             CCCCcccCEEEEEEEEcCCCceeEEEEEEEec-------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence            99999999999999999999888888998885       66666667777788999999999999999999999999999


Q ss_pred             eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +.....+.+.....    ...|.|.+++.+|.|.|+|.|.|..|.....+.|.|.
T Consensus       233 ~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          233 LRSGKKYKIMSENF----LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             ECBTTTEEEEEETT----EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CcCCCCEEEEEcCC----EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            98777665543321    2479999999999999999999999988888877764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=1.5e-35  Score=294.81  Aligned_cols=351  Identities=16%  Similarity=0.207  Sum_probs=227.8

Q ss_pred             CccccCCCeEEEEEEEeecCC----CceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPM----PDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ...+.+|++++|.|.+.+.+.    +.+.|+|++  ..+.            ...++....     .....+|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~   84 (438)
T 1qgc_4           10 SLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG-----SRTDFTLTIDPVEA   84 (438)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE-----ETTEEEEEESSCCG
T ss_pred             eEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc-----cCCcEEEEeCCCcC
Confidence            356789999999999977776    489999963  2210            122333322     11234899999999


Q ss_pred             CCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEee
Q psy670          173 DDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVK  249 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~  249 (540)
                      +|+|.|+|.+.+..+.. ...+.|.|....    .+|.+...+......+|+.+.|.|.+.+ .|.+ .+.|+++|..+.
T Consensus        85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  160 (438)
T 1qgc_4           85 DDVATYYCQQSNEVPLTFGAGTKLDLKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  160 (438)
T ss_dssp             GGCEEEEEEECSSTTCCBCCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCeeEEEEEecCCCccccCceeEEecCCC----CCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcC
Confidence            99999999999987642 334556664321    2555544332222335789999999987 6777 899999999886


Q ss_pred             ccCceEEEEe-cCCCe--EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC
Q psy670          250 ESSKIKIIVN-EQDDT--YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG  326 (540)
Q Consensus       250 ~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g  326 (540)
                      .......... ...+.  ..+.|.|.++..+|+|.|+|.|.|..+....  .+.+....     ++..+..+....+.+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~v~~G  233 (438)
T 1qgc_4          161 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRNE-----CEVMLVESGGGLVKPG  233 (438)
T ss_dssp             TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETTC------CCEEEEECCEEECTT
T ss_pred             CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--eccccccc-----ceeEEecCCceEEecC
Confidence            5521111111 12222  2458999999999999999999998776533  23332211     2223334556678899


Q ss_pred             CeEEEEEEEEccC--CCeEEEEEC--CEEcc-----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          327 KLVVMECKVKAKP--MPEIVWFHE--GKELQ-----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       327 ~~v~l~C~~~~~p--~~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      +.+.|.|.+.|.|  .+.+.|+++  +..+.                 ...++...  .++......|.|.+++.+|+|.
T Consensus       234 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~D~G~  311 (438)
T 1qgc_4          234 GSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTIS--RDNAKNTLYLQMSSLRSADTAM  311 (438)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEE--EETTTTEEEEEECSCCGGGCCE
T ss_pred             CcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEE--eecCCCeEEEEECCCChhhCEE
Confidence            9999999999988  679999996  43321                 12333322  2222224489999999999999


Q ss_pred             EEEEEEcCCe-----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC
Q psy670          386 YKCNIKNFHG-----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV  460 (540)
Q Consensus       386 Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~  460 (540)
                      |+|.|.|..+     .......|.|...                                          ...+|.+...
T Consensus       312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~------------------------------------------~~~~P~v~~~  349 (438)
T 1qgc_4          312 YYCVRREDGGDEGFAYWGQGTVVTVSAA------------------------------------------KTTPPSVYPL  349 (438)
T ss_dssp             EEEEECCSSSCCCCCSBCCCEEEEECSS------------------------------------------CCBCCEEEEE
T ss_pred             EEEEEEccCCCccceeeCCCEEEEEecC------------------------------------------CCCCCeEEEc
Confidence            9999998544     2223345555420                                          0114444332


Q ss_pred             CcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC--------CeE----EEEEEe---cCCeEEEEEEeeeee
Q psy670          461 PKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED--------NKH----VVHIEQ---VKDVSMNFELWLGIV  522 (540)
Q Consensus       461 ~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~--------~~~----~~~~~~---~~~g~y~c~~~~~~~  522 (540)
                      +....+.+|+.++|.|.+.|. |.+ .|+|+++|..+...        ..+    .+.+..   .+ |.|+|.+.....
T Consensus       350 ~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g  427 (438)
T 1qgc_4          350 APGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  427 (438)
T ss_dssp             CCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGG
T ss_pred             CcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCC
Confidence            222345689999999999997 887 99999999876521        211    123333   24 888888876543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=265.70  Aligned_cols=279  Identities=23%  Similarity=0.360  Sum_probs=203.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+|+|..+... +........+   ....|.|.+++. +|+|.|+|.+.|..|..
T Consensus        15 ~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~---~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~   90 (304)
T 2yd9_A           15 DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDES---AGAVLRIQPLRTPRDENVYECVAQNSVGEI   90 (304)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTT---TEEEEEECSCCTTTTCSEEEEEEECSSCEE
T ss_pred             ceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCC---CceEEEEecccccCCCeEEEEEEECCCCeE
Confidence            456789999999999999999999999999888543 3333322111   124899999998 99999999999999988


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc-eEEEEecCCCeEEEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK-IKIIVNEQDDTYEII  268 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~~~  268 (540)
                      ...+.|.|...+..+...|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..+... ..+    .
T Consensus        91 ~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~----~  165 (304)
T 2yd9_A           91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL-RSG----A  165 (304)
T ss_dssp             CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC-TTS----C
T ss_pred             EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC-CCe----E
Confidence            8888888886543222236677677777788999999999999999999999999998865432 111111 111    6


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH  347 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~  347 (540)
                      |.|.+++.+|+|.|+|.+.|..|..... ..+.|....    .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++
T Consensus       166 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~----~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~  241 (304)
T 2yd9_A          166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ  241 (304)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCC----EEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEE
T ss_pred             EEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeec----cCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEE
Confidence            9999999999999999999988765433 455554311    15667767766778899999999999999999999999


Q ss_pred             CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEE
Q psy670          348 EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIK  412 (540)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  412 (540)
                      +|..+.......     .+   ...|.|.++  +|+|.|+|.|.|..|....++.|.|...+...
T Consensus       242 ~~~~l~~~~~~~-----~~---~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  296 (304)
T 2yd9_A          242 GAEDLTPEDDMP-----VG---RNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKAG  296 (304)
T ss_dssp             TTEECSCSSSCC-----BS---EEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred             CCEECCCccccc-----CC---cEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcccc
Confidence            999987654321     11   226777766  59999999999999999999999998755433

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=4.5e-34  Score=284.29  Aligned_cols=369  Identities=14%  Similarity=0.144  Sum_probs=226.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD   67 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   67 (540)
                      .+.|.+.|.+.    +.+.+.|||+.  ..+.                 ...|+.+.....+    ...+|.|.+++.+|
T Consensus        19 ~L~C~~~~~~~----~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D   90 (444)
T 1igt_B           19 KLSCATSGFTF----SDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAK----NTLYLQMSRLKSED   90 (444)
T ss_dssp             EEEEEEESSCG----GGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTT----TEEEEEECSCCGGG
T ss_pred             EEEEEcCCCcc----CCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCC----CeEEEEECCCCHHH
Confidence            46799988752    12789999863  3211                 1245555433211    24689999999999


Q ss_pred             CeeEEEEEEccCcc---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCE
Q psy670           68 SGEYKVIAKNKNGE---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTK  141 (540)
Q Consensus        68 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~  141 (540)
                      +|.|+|.+.+..+.   ....+.|.|.... ..+.+..      ......+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~------~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  164 (444)
T 1igt_B           91 TAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYP------LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL  164 (444)
T ss_dssp             CEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEE------ECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeE------ecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence            99999999987654   2234566665321 0111110      0111224789999999999875 776 999999887


Q ss_pred             eecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC-----------cCCCCCCCee
Q psy670          142 VIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG-----------ENGAGFAPSF  210 (540)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-----------~~~~~~~p~~  210 (540)
                      .+..........  .+.....+.|.|.++..+| |.|+|.+.|..+.......+.+.+.           ......+|.+
T Consensus       165 ~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v  241 (444)
T 1igt_B          165 SSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV  241 (444)
T ss_dssp             CTTEEECCCEEE--TTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred             CCCeEecCcccc--CCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence            531100000000  0222233579999999999 9999999999887654444433110           0011124444


Q ss_pred             -ccCCceee-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          211 -IEKPRIIP-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       211 -~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                       ...+.... +.+|+.+.|.|.+.+.+    .+.+.|++++..+......... .........+.|.|.+++.+|+|.|+
T Consensus       242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~  321 (444)
T 1igt_B          242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFK  321 (444)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEE
T ss_pred             EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEE
Confidence             33333333 57899999999999873    3689999999887543322111 11112234568999999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCCceEEE
Q psy670          284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTDRISWN  361 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~  361 (540)
                      |.|.|..+.......+.+..   ....+|.+...+.......+..++|.|.+.| .|.+ .|.|+++|..+.........
T Consensus       322 C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  398 (444)
T 1igt_B          322 CKVNNKDLPAPIERTISKPK---GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPV  398 (444)
T ss_dssp             EEEECTTCSSCEEEEEECCC---CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE
T ss_pred             EEEEcCCCCCceEEEEeccC---CCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccce
Confidence            99999887663333332200   0122565543332211223445999999998 5665 89999999988432111111


Q ss_pred             EEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          362 VTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       362 ~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ...++. ...+.|.|.....+|.|.|+|.|.|...
T Consensus       399 ~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          399 LDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             eCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            122222 2234678877777789999999999753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=4.7e-34  Score=284.22  Aligned_cols=363  Identities=16%  Similarity=0.234  Sum_probs=224.9

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...++.+....   ....++|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   85 (444)
T 1igt_B            9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDN---AKNTLYLQMSR   85 (444)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeC---CCCeEEEEECC
Confidence            35688999999999998764  568999985  22210                 12344443221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670          170 PTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA  244 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~  244 (540)
                      ++.+|+|.|.|.+.+..+.   ....+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  162 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKT---TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  162 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCC---BCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCC---CCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence            9999999999999987543   22335666653211   1344432222233578999999999988 4776 9999998


Q ss_pred             CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-----------cCCCCCCCe
Q psy670          245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-----------AEPEGDPPT  313 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-----------~~~~~~~p~  313 (540)
                      +..+......... ........+.|.|.++..+| |.|+|.|.|..+.......+.+...           ......+|.
T Consensus       163 ~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  240 (444)
T 1igt_B          163 SLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS  240 (444)
T ss_dssp             TBCTTEEECCCEE-ETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCE
T ss_pred             CCCCCeEecCccc-cCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCce
Confidence            8753211000000 11111223479999999889 9999999999887544443332100           000112455


Q ss_pred             E-EeCCceEE-eeCCCeEEEEEEEEccC----CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeE
Q psy670          314 F-IEKPKIRS-EQGGKLVVMECKVKAKP----MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       314 ~-~~~~~~~~-~~~g~~v~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y  386 (540)
                      + +..+.... +.+|+.++|.|.+.|.+    .+.|.|+++|..+............++. ...++|.|.++..+|+|.|
T Consensus       241 v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  320 (444)
T 1igt_B          241 VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF  320 (444)
T ss_dssp             EEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred             EEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence            4 44343332 47899999999999974    3599999999988654332211111221 2345899999999999999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEe
Q psy670          387 KCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTI  466 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~  466 (540)
                      +|.|.|..+.......+.+..                                          ....+|.+...+.....
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~------------------------------------------~~~~~P~v~~~~~~~~~  358 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPK------------------------------------------GSVRAPQVYVLPPPEEE  358 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCC------------------------------------------CCCBCCEEEEECCCGGG
T ss_pred             EEEEEcCCCCCceEEEEeccC------------------------------------------CCCCCCEEEEeCCChHH
Confidence            999999988663333332100                                          01125655432221112


Q ss_pred             cCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC----------CeEE----EEEEecC---CeEEEEEEeeeeee
Q psy670          467 SKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED----------NKHV----VHIEQVK---DVSMNFELWLGIVE  523 (540)
Q Consensus       467 ~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~----------~~~~----~~~~~~~---~g~y~c~~~~~~~~  523 (540)
                      ..++.++|.|.+.|. |++ +|+|+|+|..+...          ..+.    +.+...+   .|.|+|.+....+.
T Consensus       359 ~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l~  434 (444)
T 1igt_B          359 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLH  434 (444)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTSG
T ss_pred             ccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCcC
Confidence            234459999999995 555 99999999877421          1111    2333333   78899988865543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.3e-32  Score=257.83  Aligned_cols=270  Identities=20%  Similarity=0.342  Sum_probs=205.2

Q ss_pred             CccccCCCeEEEEEEEeecC-CCceEEEe-CCEeecC-CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          111 PTIHQDGDLLVMECVLEASP-MPDIIWYQ-GTKVIED-TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ...+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+.. ..+.......    .....|.|.+++.+|+|.|+|.+.+..+
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   86 (291)
T 1qz1_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (291)
T ss_dssp             SEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             CceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence            45688999999999998876 68999999 7777653 3344333211    1234899999999999999999999885


Q ss_pred             e-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          188 E-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       188 ~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      . ....+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............     
T Consensus        87 ~~~~~~~~l~v~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----  154 (291)
T 1qz1_A           87 TQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-----  154 (291)
T ss_dssp             CEEEEEEEEEEEC-------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTT-----
T ss_pred             CeeEEEEEEEeec-------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccC-----
Confidence            4 46677787774       6666666777778899999999999999999999999998875443222222222     


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCC--ceEEeeCCCeEEEEEEEEccCCCe
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKP--KIRSEQGGKLVVMECKVKAKPMPE  342 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~  342 (540)
                      ..|.|.+++.+|+|.|+|.+.|..+..  ...+.+.|..       +|.+...+  ....+..|+.+.|.|.+.|.|.+.
T Consensus       155 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~  227 (291)
T 1qz1_A          155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV-------PPTVQARQSIVNATANLGQSVTLVCDADGFPEPT  227 (291)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-------EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCE
T ss_pred             CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec-------CCcccccccccccccccCceEEEEEEEEEeCCCc
Confidence            169999999999999999999875443  3345555554       45554433  244677899999999999999999


Q ss_pred             EEEEECCEEccCCCc--eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          343 IVWFHEGKELQQTDR--ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       343 i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +.|+++|..+.....  .......++.    .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       228 i~W~~~g~~~~~~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          228 MSWTKDGEPIENEEEDDEKHIFSDDSS----ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEETTEECCCC--CCSSEEECTTSC----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEECcCCCCCCcceEEcCCCc----EEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            999999999876542  1222222222    799999999999999999999999999999988864

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=2.6e-32  Score=273.81  Aligned_cols=369  Identities=13%  Similarity=0.147  Sum_probs=222.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD   67 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   67 (540)
                      .+.|.+.|.+.    +.+.+.|||+.  ..+.                 ...|+.+.....+    ...+|.|.+++.+|
T Consensus        20 ~L~C~~~~~~~----~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D   91 (475)
T 1iga_A           20 KVSCKASGYSF----TSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSA----TTAYMGLSSLRPED   91 (475)
T ss_pred             EEEEEecCCCC----CCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCC----CeEEEEECCCChhh
Confidence            46688887652    12789999963  2110                 1234444332111    23689999999999


Q ss_pred             CeeEEEEEEccCcc------eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-C-ceEEE
Q psy670           68 SGEYKVIAKNKNGE------GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-P-DIIWY  137 (540)
Q Consensus        68 ~G~Y~C~~~~~~~~------~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~-~v~W~  137 (540)
                      +|.|.|.+.+..+.      ....+.|.|.... ..+.+.       ...+..+.+|+.++|.|.+.|. |. + .|.|+
T Consensus        92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~-------~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~  164 (475)
T 1iga_A           92 TAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVF-------PLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWS  164 (475)
T ss_pred             CEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEE-------ecCccccCCCCeEEEEEEEeeecCCCceEEEEc
Confidence            99999999987652      2234566665311 111111       1111223689999999999886 65 5 99999


Q ss_pred             eCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC-----------CCC
Q psy670          138 QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGEN-----------GAG  205 (540)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~-----------~~~  205 (540)
                      +++................+.....+.|.|..+..+|+|.|+|.+.|..+.. ...+.+.|...+.           ...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~  244 (475)
T 1iga_A          165 ESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSC  244 (475)
T ss_pred             CCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCC
Confidence            9875321100000000011222233479999999999999999999987642 3334433311000           000


Q ss_pred             CCCee-ccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcE
Q psy670          206 FAPSF-IEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSG  280 (540)
Q Consensus       206 ~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g  280 (540)
                      .+|.+ ...+....+.+|+.+.|.|.+.+.++   +.|.|  ++..+......... .........+.|.|.+++.+|+|
T Consensus       245 ~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G  322 (475)
T 1iga_A          245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK  322 (475)
T ss_pred             CCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCC
Confidence            13333 33333334578999999999998644   68999  44433322111111 11111224457999999999999


Q ss_pred             EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCc
Q psy670          281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDR  357 (540)
Q Consensus       281 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~  357 (540)
                      .|+|.|.|..+.......+.+..    ...+|.+...+ ....+.+|+.+.|.|.+.|. | .+.|.|+++|..+.....
T Consensus       323 ~Y~C~a~n~~~~~~~~~~v~~~~----~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  398 (475)
T 1iga_A          323 TFTCTAAYPESKTPLTATLSKSG----NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKY  398 (475)
T ss_pred             cEEEEEEcCCCCCceEEEeecCC----CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCce
Confidence            99999999888754444443211    11255554333 22335689999999999986 4 349999999999876531


Q ss_pred             eEE--EEE---ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          358 ISW--NVT---LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       358 ~~~--~~~---~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ...  ...   .++. ...+.|.|.....+|.|.|+|.|.|....
T Consensus       399 ~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          399 LTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             eecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            111  111   1121 23457888888888999999999997643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=1.8e-33  Score=280.90  Aligned_cols=369  Identities=13%  Similarity=0.175  Sum_probs=218.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--ee---c--------------ccCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SL---L--------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD   67 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~---l--------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   67 (540)
                      .+.|.+.|.|.    +.+.+.|||+.  ..   +              ....|+.+.....+    ..++|.|.+++.+|
T Consensus        19 ~L~C~~~~~~~----~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D   90 (457)
T 1hzh_H           19 KVSCQASGYRF----SNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA----NTAYMELRSLRSAD   90 (457)
T ss_dssp             EECEEEESSCG----GGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT----TEEEEEECSCCGGG
T ss_pred             EEEEEecCccc----cCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCC----CEEEEEECCCCccc
Confidence            46799988762    12789999853  21   1              01345555433221    23689999999999


Q ss_pred             CeeEEEEEEccCc------------ceeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CC-C
Q psy670           68 SGEYKVIAKNKNG------------EGSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PM-P  132 (540)
Q Consensus        68 ~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~-~  132 (540)
                      +|.|+|.+.+..+            .....+.|.|...+ ..+.+.      .......+.+|+.++|.|.+.+. |. +
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~------~~~~~~~~~~g~~v~L~C~~~g~~P~~~  164 (457)
T 1hzh_H           91 TAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVF------PLAPSSKSTSGGTAALGCLVKDYFPEPV  164 (457)
T ss_dssp             CEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEE------EECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred             CEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEE------ecCccccccCCCcEEEEEEEeEEeCCCe
Confidence            9999999998765            22344566665421 011111      00111235789999999999876 65 7


Q ss_pred             ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcC----------
Q psy670          133 DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN----------  202 (540)
Q Consensus       133 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~----------  202 (540)
                      .+.|++++..+... .........+.....+.|.|.++..+| |.|+|.+.|..+.......+.+.....          
T Consensus       165 ~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~  242 (457)
T 1hzh_H          165 TVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP  242 (457)
T ss_dssp             EEEETTTTBCTTEE-EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCC
T ss_pred             EEEEEeCCEeccce-EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCc
Confidence            89999998654211 111111111222334589999999999 999999999877655444444332110          


Q ss_pred             CCCCCCee-ccCCceee-cCCCCeEEEEEEecccCCC----eEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCC
Q psy670          203 GAGFAPSF-IEKPRIIP-NESGTLIQMKCKCSAKPRP----EVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDP  274 (540)
Q Consensus       203 ~~~~~p~~-~~~~~~~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~  274 (540)
                      ....+|.+ ...+.... +.+|+.+.|.|.+.+.|++    .+.|++++..+........ .....+...  ..|.|...
T Consensus       243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~~  321 (457)
T 1hzh_H          243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLHQ  321 (457)
T ss_dssp             CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE-EECTTSCEEEEEEECCCHH
T ss_pred             cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc-eecCCCcEEEEEEEEECHH
Confidence            00113443 33333222 6689999999999987543    8999999988754322211 111222221  22333222


Q ss_pred             CCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCC-ceEEeeCCCeEEEEEEEEccCCC--eEEEEECCEE
Q psy670          275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP-KIRSEQGGKLVVMECKVKAKPMP--EIVWFHEGKE  351 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~~~~  351 (540)
                      ..+|+|.|+|.|.|..+.......+.+..   ....+|.+...+ ....+..|+ +.|.|.+.|.+++  .|.|+++|..
T Consensus       322 d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~  397 (457)
T 1hzh_H          322 DWLNGKEYKCKVSNKALPAPIEKTISKAK---GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQP  397 (457)
T ss_dssp             HHHHTCCEEEEEECTTSSSCEEEEECCCC---CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             HccCCCcEEEEEeCCCCCCcceEEEEccc---CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEE
Confidence            22339999999998755443333332210   011255554433 222234455 9999999996443  8999999998


Q ss_pred             ccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          352 LQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       352 ~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +............++. ...+.|.|.....+|+|.|+|.|.|....
T Consensus       398 l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          398 ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             CCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence            8643221111122222 22346777776667899999999997643

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=100.00  E-value=1.2e-33  Score=282.35  Aligned_cols=362  Identities=13%  Similarity=0.205  Sum_probs=218.2

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+  +..   +.              ...++.+..+.   ....++|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   85 (457)
T 1hzh_H            9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---SANTAYMELRS   85 (457)
T ss_dssp             CEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             ceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeC---CCCEEEEEECC
Confidence            45688999999999998776  678999984  221   10              12344333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc------------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC
Q psy670          170 PTKDDGGNYRCNACNSIG------------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR  236 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~  236 (540)
                      ++.+|+|.|+|.+.+..+            .....+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+. |.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCC---BCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCC---CCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            999999999999998754            122345666654211   24444433333446789999999999885 65


Q ss_pred             -CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc---------C
Q psy670          237 -PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA---------E  306 (540)
Q Consensus       237 -~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~---------~  306 (540)
                       +.|.|++++..+...........+......+.|.|.++..+| |.|+|.|.|..+.......+.+....         .
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~  241 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPA  241 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCC
T ss_pred             CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCC
Confidence             799999998654211111111111112234579999999889 99999999977664443333322110         0


Q ss_pred             C-CCCCCeE-EeCCceEE-eeCCCeEEEEEEEEccCCC----eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcC
Q psy670          307 P-EGDPPTF-IEKPKIRS-EQGGKLVVMECKVKAKPMP----EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKD  377 (540)
Q Consensus       307 ~-~~~~p~~-~~~~~~~~-~~~g~~v~l~C~~~~~p~~----~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~  377 (540)
                      + ...+|.+ +..+.... +.+|+.+.|.|.+.|.|++    .|.|++++..+........ ....++.+  .+.|.|..
T Consensus       242 ~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~  320 (457)
T 1hzh_H          242 PELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLH  320 (457)
T ss_dssp             CCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE-EECTTSCEEEEEEECCCH
T ss_pred             ccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc-eecCCCcEEEEEEEEECH
Confidence            0 1114444 33333222 5679999999999997553    9999999988754322111 11222221  12333333


Q ss_pred             CCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeecee
Q psy670          378 PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVI  457 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  457 (540)
                      ...+|+|.|+|.|.|..+.......+.+..                                          ....+|.+
T Consensus       321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------~~~~~P~v  358 (457)
T 1hzh_H          321 QDWLNGKEYKCKVSNKALPAPIEKTISKAK------------------------------------------GQPREPQV  358 (457)
T ss_dssp             HHHHHTCCEEEEEECTTSSSCEEEEECCCC------------------------------------------CCCBCCEE
T ss_pred             HHccCCCcEEEEEeCCCCCCcceEEEEccc------------------------------------------CCCCCCeE
Confidence            333349999999998765543333332200                                          01125555


Q ss_pred             ecCC-cEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCC----------CeEE----EEEEe---cCCeEEEEEE
Q psy670          458 REVP-KVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKED----------NKHV----VHIEQ---VKDVSMNFEL  517 (540)
Q Consensus       458 ~~~~-~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~----------~~~~----~~~~~---~~~g~y~c~~  517 (540)
                      ...+ ....+..|+ ++|.|.+.|.+++  .|+|+|+|..+...          ..+.    +.+..   .+.|.|+|.+
T Consensus       359 ~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a  437 (457)
T 1hzh_H          359 YTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV  437 (457)
T ss_dssp             EEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE
T ss_pred             EEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEE
Confidence            4332 212233455 9999999997654  89999999988532          1111    22333   3579999999


Q ss_pred             eeeeee
Q psy670          518 WLGIVE  523 (540)
Q Consensus       518 ~~~~~~  523 (540)
                      ....+.
T Consensus       438 ~n~~l~  443 (457)
T 1hzh_H          438 MHEALH  443 (457)
T ss_dssp             ECTTSG
T ss_pred             EECCCC
Confidence            875543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=100.00  E-value=6.3e-32  Score=270.95  Aligned_cols=362  Identities=11%  Similarity=0.177  Sum_probs=220.1

Q ss_pred             CCccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ....+.+|++++|.|.+.+.+  ...+.|||+.  ..+.                 ...++.+...   .....++|.|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~   85 (475)
T 1iga_A            9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD---TSATTAYMGLS   85 (475)
T ss_pred             CcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEc---CCCCeEEEEEC
Confidence            356788999999999997664  5689999952  2110                 0123332221   11234589999


Q ss_pred             CCCCCCCeEEEEEEEcCCce------eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-C-eE
Q psy670          169 NPTKDDGGNYRCNACNSIGE------SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-P-EV  239 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~v  239 (540)
                      +++.+|+|.|.|.+.+..+.      ....+.|.|.....   .+|.+...+. ..+.+|+.+.|.|.+.+. |. + .|
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v  161 (475)
T 1iga_A           86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP---TSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSV  161 (475)
T ss_pred             CCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCC---cCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEE
Confidence            99999999999999987652      22345666663111   1344433221 123689999999999985 65 4 99


Q ss_pred             EEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeecc-----------C
Q psy670          240 KWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEA-----------E  306 (540)
Q Consensus       240 ~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~-----------~  306 (540)
                      .|++++............ ..+......+.|.|..+..+|.|.|+|.|.|..+.. ...+.+.|...+           .
T Consensus       162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~  241 (475)
T 1iga_A          162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS  241 (475)
T ss_pred             EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence            999987532111000000 011112223468888888899999999999987632 222222221100           0


Q ss_pred             CCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCC
Q psy670          307 PEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKE  381 (540)
Q Consensus       307 ~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~  381 (540)
                      +...+|.+ +..+....+.+|+.+.|.|.+.|.++   +.|.|  ++..+............++. ...+.|.|.++..+
T Consensus       242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~  319 (475)
T 1iga_A          242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN  319 (475)
T ss_pred             CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhc
Confidence            00014444 33333333578999999999998754   58999  44444322111111111111 23457999999999


Q ss_pred             CCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecC-
Q psy670          382 DTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREV-  460 (540)
Q Consensus       382 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-  460 (540)
                      |+|.|+|.|.|..+.......|.+..                                           ...+|.+... 
T Consensus       320 d~G~Y~C~a~n~~~~~~~~~~v~~~~-------------------------------------------~~~~P~v~~~~  356 (475)
T 1iga_A          320 HGKTFTCTAAYPESKTPLTATLSKSG-------------------------------------------NTFRPEVHLLP  356 (475)
T ss_pred             cCCcEEEEEEcCCCCCceEEEeecCC-------------------------------------------CCCCCeEEEEC
Confidence            99999999999988754444443211                                           0125665443 


Q ss_pred             CcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCCC---------------eE----EEEEEe---cCCeEEEEE
Q psy670          461 PKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKEDN---------------KH----VVHIEQ---VKDVSMNFE  516 (540)
Q Consensus       461 ~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~~---------------~~----~~~~~~---~~~g~y~c~  516 (540)
                      +....+.+|+.++|.|.+.|.++  +.|+|+|+|..+..+.               .+    .+.+..   .+.|.|+|.
T Consensus       357 ~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~  436 (475)
T 1iga_A          357 PPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM  436 (475)
T ss_pred             CChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEE
Confidence            22234678999999999999644  4999999999875431               11    122333   347999999


Q ss_pred             Eeeeeee
Q psy670          517 LWLGIVE  523 (540)
Q Consensus       517 ~~~~~~~  523 (540)
                      +....+.
T Consensus       437 a~n~~l~  443 (475)
T 1iga_A          437 VGHEALP  443 (475)
T ss_pred             EEcCCCC
Confidence            9865543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=5e-32  Score=255.39  Aligned_cols=268  Identities=20%  Similarity=0.372  Sum_probs=201.2

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCC-CCcEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIG-PDSGTYRC  284 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C  284 (540)
                      .+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +........+.  ...|.|.+++. +|+|.|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~--~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESA--GAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTT--EEEEEECSCCTTTTCSEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCC--ceEEEEecccccCCCeEEEE
Confidence            3788888888888999999999999999999999999999887543 33322222211  24799999998 99999999


Q ss_pred             EEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc-eEEEEE
Q psy670          285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR-ISWNVT  363 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~  363 (540)
                      .+.|..|.....+.|.|...+......|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ......
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  161 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL  161 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence            9999998888888888876543333347777778788899999999999999999999999999998865421 112111


Q ss_pred             ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE-EEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcc
Q psy670          364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN-LTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQ  442 (540)
Q Consensus       364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (540)
                       ..+    .|.|.+++.+|+|.|+|.|.|..|..... ..|.|..                                   
T Consensus       162 -~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~-----------------------------------  201 (304)
T 2yd9_A          162 -RSG----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV-----------------------------------  201 (304)
T ss_dssp             -TTS----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----------------------------------
T ss_pred             -CCe----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe-----------------------------------
Confidence             222    79999999999999999999999876533 4555542                                   


Q ss_pred             cccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCe-----EEEE-EEecCCeEEEEE
Q psy670          443 FKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNK-----HVVH-IEQVKDVSMNFE  516 (540)
Q Consensus       443 ~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~-----~~~~-~~~~~~g~y~c~  516 (540)
                              ...+|.+...+....+.+|+.++|.|.+.|.|.|.++|+++|..+..+..     ..+. ....|.|.|+|.
T Consensus       202 --------~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~  273 (304)
T 2yd9_A          202 --------QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCV  273 (304)
T ss_dssp             --------CCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEEEEE
T ss_pred             --------eccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEcccccCEEEEEE
Confidence                    01267777777777888999999999999999999999999998865432     2232 334679999999


Q ss_pred             Eeeeeeee
Q psy670          517 LWLGIVEK  524 (540)
Q Consensus       517 ~~~~~~~~  524 (540)
                      +.+.....
T Consensus       274 a~N~~G~~  281 (304)
T 2yd9_A          274 AMSSLGVI  281 (304)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCcE
Confidence            99755444

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=6e-33  Score=263.51  Aligned_cols=275  Identities=18%  Similarity=0.299  Sum_probs=207.8

Q ss_pred             ccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+|+|..+....+..+..       ....|.|.+++.+|+|.|+|.+.+..+...
T Consensus        16 ~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~   88 (317)
T 2y25_A           16 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGKDK   88 (317)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEEEEEESSSCEEE
T ss_pred             EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEEC-------CeEEEEEccCCcccCeEEEEEEECCCCcEE
Confidence            467899999999999877 778999999999987665544331       124899999999999999999999988877


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----------cCCCeEEEEeCCEEeeccCceEEEEec
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA----------KPRPEVKWFKADKLVKESSKIKIIVNE  260 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~v~W~~~~~~l~~~~~~~~~~~~  260 (540)
                      ..+.|.|..       .|.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++..+....+.......
T Consensus        89 ~~~~l~v~~-------~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  161 (317)
T 2y25_A           89 SRLKLVDEA-------FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG  161 (317)
T ss_dssp             EEECCSTHH-------HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred             EEEEEEEec-------CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence            666665543       233333333445567777777777766          688999999999988776665543322


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc-------------CCCCCCCeEEe-CCceEEeeCC
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA-------------EPEGDPPTFIE-KPKIRSEQGG  326 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~-------------~~~~~~p~~~~-~~~~~~~~~g  326 (540)
                      .    ...|.|.+++.+|+|.|+|.+.|..|.....+.+.+....             .....+|.+.. .+....+.+|
T Consensus       162 ~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          162 E----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             S----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             C----EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence            1    3479999999999999999999988877777666543200             00111344443 3556788999


Q ss_pred             CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          327 KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       327 ~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.+.|.|.+.|.|.+.+.|+++|..+....++.+.... +.  .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA-GR--TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBT-TT--EEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcC-CC--EEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            99999999999999999999999998777665443221 22  3489999999999999999999999999999999887


Q ss_pred             E
Q psy670          407 M  407 (540)
Q Consensus       407 ~  407 (540)
                      .
T Consensus       315 ~  315 (317)
T 2y25_A          315 I  315 (317)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=255.99  Aligned_cols=268  Identities=24%  Similarity=0.416  Sum_probs=201.6

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ....+.+|+.+.|.|.+.+.|. .+.|++ +|..+....+..+....     ....|.|.+++.+|+|.|+|.+.+..|.
T Consensus        12 ~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~~~n~~g~   85 (291)
T 2wim_A           12 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQATDAKGQ   85 (291)
T ss_dssp             SEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEEECSSSC
T ss_pred             cceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-----CEEEEEEccCCcccCEEEEEEEecccCc
Confidence            3457889999999999988775 899999 67777666666554321     2348999999999999999999998876


Q ss_pred             e-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670          189 S-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       189 ~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                      . ...+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............     
T Consensus        86 ~~~~~~~l~v~~-------~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----  153 (291)
T 2wim_A           86 TQEATVVLEIYQ-------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-----  153 (291)
T ss_dssp             EEEEEEEEEEEC-------CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS-----
T ss_pred             eEEEEEEEEecC-------CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC-----
Confidence            5 5567777764       55555556667788999999999999999999999999988765332222222211     


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCCCee--eeEEEEEeeccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeE
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFGESN--ANLNLNIEAEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEI  343 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i  343 (540)
                      .|.|.+++.+|+|.|+|.+.+..+...  ..+.+.+..       +|.+...+.  ...+.+|+.+.|.|.+.|.|.+.+
T Consensus       154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  226 (291)
T 2wim_A          154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  226 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB-------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred             CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc-------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence            599999999999999999999875543  334445544       333332222  335678999999999999999999


Q ss_pred             EEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEE
Q psy670          344 VWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV  408 (540)
Q Consensus       344 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  408 (540)
                      .|+++|..+....++..  ...+.    .|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus       227 ~W~~~g~~~~~~~~~~~--~~~~~----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  285 (291)
T 2wim_A          227 SWFRNGKLIEENEKYIL--KGSNT----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ  285 (291)
T ss_dssp             EEEETTEECCCTTTEEE--CSTTC----EEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             EEEECCEECcCCccEEE--cCCcc----EEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence            99999999987665443  12222    7999999999999999999999999999999998763

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.1e-31  Score=249.57  Aligned_cols=280  Identities=17%  Similarity=0.279  Sum_probs=203.5

Q ss_pred             CCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          110 KPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ....+.+|+.+.|.|... +.|.+.+.|+|++..+....++.+....     ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~~~n~~g~   83 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG-----NKTKMTFKDLGMDDLGIYSCDVTDTDGI   83 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET-----TEEEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC-----CEEEEEECcCCccCCEEEEEEEEeCCCc
Confidence            345678999999999984 5788999999999999877777665421     1238999999999999999999998875


Q ss_pred             eEEEEEEEEecCcCCCC-----CCCeeccCC-ceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecC
Q psy670          189 SNANIALNFQGGENGAG-----FAPSFIEKP-RIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQ  261 (540)
Q Consensus       189 ~~~~~~l~v~~~~~~~~-----~~p~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~  261 (540)
                      .. .+.+.|........     .+|.+...+ ....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.....
T Consensus        84 ~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~  162 (312)
T 2y23_A           84 AS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN  162 (312)
T ss_dssp             CE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT
T ss_pred             EE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC
Confidence            44 45555542100000     022332222 267788999999999998 78999999999999998877666554432


Q ss_pred             CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc--------------CCCCCCCeEEeCCceEEeeCCC
Q psy670          262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA--------------EPEGDPPTFIEKPKIRSEQGGK  327 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~--------------~~~~~~p~~~~~~~~~~~~~g~  327 (540)
                      ...  ..|.|.+++.+|+|.|+|.+.+....  ....+.+....              .....+|.+.... ...+.+|+
T Consensus       163 ~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~  237 (312)
T 2y23_A          163 TGI--IEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGEC  237 (312)
T ss_dssp             TTE--EEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTT
T ss_pred             CCE--EEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCC
Confidence            332  57999999999999999999864333  33333331000              0000135554332 36788999


Q ss_pred             eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .+.|.|.+.+.|.+ .+.|+++|..+....++...   ++   ...|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       238 ~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~---~~---~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~  311 (312)
T 2y23_A          238 NVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK---DG---ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  311 (312)
T ss_dssp             EEEEEEEEESCCSSCEEEEEETTEEEEEECCC-------C---EEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred             EEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE---CC---EEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence            99999999999988 99999999998765554432   11   2389999999999999999999999999998888764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=100.00  E-value=9.1e-35  Score=288.35  Aligned_cols=369  Identities=11%  Similarity=0.143  Sum_probs=221.4

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eecc-----------------cCCceEEEEecCccceeeEEEEEEcccccCC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK-----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD   67 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   67 (540)
                      .+.|.+.|.+.    +.+.+.|||++  ..+.                 ...|+.+.....+    ...+|.|.+++.+|
T Consensus        18 ~L~C~~~~~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~~L~I~~v~~~D   89 (434)
T 1igy_B           18 KMSCKASGYTF----TTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSS----NTANIHLSSLTSDD   89 (434)
T ss_dssp             EECCEECSSCG----GGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGG----CBBCEEECSBCGGG
T ss_pred             EEEEEccCCcc----cCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCC----CEEEEEECCCChHH
Confidence            46799988741    12789999974  2210                 1234443222111    12589999999999


Q ss_pred             CeeEEEEEEccCcceeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-ceEEEeCCEeec
Q psy670           68 SGEYKVIAKNKNGEGSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIE  144 (540)
Q Consensus        68 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~  144 (540)
                      +|.|+|.+.+..+.....+.|.|.... ..+.+..      ......+.+|+.++|.|.+.|. |.+ .+.|++++..+.
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~------~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~  163 (434)
T 1igy_B           90 SAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYP------LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  163 (434)
T ss_dssp             CSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEE------ECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred             CEEEEEEEEccccccCCceEEEEccCCCCCCeEEE------cCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence            999999999865444455667765321 1111110      0111234789999999999886 776 999999987531


Q ss_pred             CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcC------CCCCCCee-ccCCcee
Q psy670          145 DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGEN------GAGFAPSF-IEKPRII  217 (540)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------~~~~~p~~-~~~~~~~  217 (540)
                      ........ . .+.....+.|.|.++..+| |.|+|.+.|..+.......+.+.....      .... |.+ ...+...
T Consensus       164 ~~~~~~~~-~-~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~-p~v~~~~p~~~  239 (434)
T 1igy_B          164 VHTFPAVL-Q-SDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEV-SSVFIFPPKPK  239 (434)
T ss_dssp             EEECCCEE-C-SSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSS-CCEEEECCCHH
T ss_pred             eEecCcee-c-CCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcC-cEEEEeCCChH
Confidence            10000000 0 0222233579999999989 999999999988754444443321000      0001 333 2223222


Q ss_pred             e-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          218 P-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       218 ~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      . +.+|+.+.|.|.+.+.+    .+.|.|++++..+......... .........+.|.|.++..+|+|.|+|.|.|..+
T Consensus       240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence            2 78899999999999873    4589999999776533211110 0111112234688999999999999999999877


Q ss_pred             CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-e
Q psy670          292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-K  368 (540)
Q Consensus       292 ~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~  368 (540)
                      .......+.+...   ...+|.+...+.......|+.+.|.|.+.|. |+ +.|.|+++|..+............++. .
T Consensus       320 ~~~~~~~v~~~~~---~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~  396 (434)
T 1igy_B          320 PAPIEKTISKTKG---KPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYF  396 (434)
T ss_dssp             SSCCCCCCCCCCS---CCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEE
T ss_pred             CCceeEEEeccCC---CCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEE
Confidence            6433222221000   0114444333322223357789999999985 43 389999999987432111110112222 2


Q ss_pred             eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          369 YHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..+.|.|.....+|+|.|+|.|.|....
T Consensus       397 ~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          397 VYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            2346888877778899999999998643

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=5.6e-31  Score=250.94  Aligned_cols=268  Identities=16%  Similarity=0.160  Sum_probs=196.0

Q ss_pred             CccccCCCeEEEEEEEeec---------CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS---------PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRC  180 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~---------p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C  180 (540)
                      ...+.+|+++.|.|.+.+.         |.+.+.|+|++..+....+. ..         ...|.|.+++.+|+| .|+|
T Consensus        38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~---------~~~L~i~~v~~~D~Gs~Y~C  107 (329)
T 3oq3_B           38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VK---------NGDLWIANYTSNDSHRRYLC  107 (329)
T ss_dssp             EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EE---------TTEEEESSCCGGGGGCCEEE
T ss_pred             eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-ee---------cceEEEcCCChHhCCCcEEE
Confidence            3457899999999999774         55789999998876543332 11         118999999999999 9999


Q ss_pred             EEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEe
Q psy670          181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVN  259 (540)
Q Consensus       181 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~  259 (540)
                      .+.+..|.......+.+...      +|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+.......... 
T Consensus       108 ~a~n~~g~~~~~~~~~v~~~------~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-  180 (329)
T 3oq3_B          108 TVTTKNGDCVQGIVRSHIRK------PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-  180 (329)
T ss_dssp             EEECTTSCEEEEEEEEEECC------CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-
T ss_pred             EEEeCCCceeeEEEEEEEcC------CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-
Confidence            99998876544443333321      33333333344567899999999999999 89999999999885333222211 


Q ss_pred             cCCCeEEEEEEEeCCCCCCcEEEEEEEEcC--CCCeeee----EEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670          260 EQDDTYEIICEITDPIGPDSGTYRCNVKNE--FGESNAN----LNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC  333 (540)
Q Consensus       260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~----~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C  333 (540)
                      .      ..|.|.+++.+|+|.|+|.+.|.  .|.....    +.|.|...+.  . ...++ .+....+.+|+.+.|.|
T Consensus       181 ~------~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~--~-~~~~~-~~~~~~v~~G~~~~l~C  250 (329)
T 3oq3_B          181 G------QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQD--H-RFKLI-LDPKINVTIGEPANITC  250 (329)
T ss_dssp             T------TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCC--C-CEEEE-CCSEEEECTTSCEEEEE
T ss_pred             C------CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCC--C-CCcee-cCCeeEEecCCCEEEEE
Confidence            1      27999999999999999999987  5544333    5555554211  1 11333 56667889999999999


Q ss_pred             EEEccC---CC-eEEEEECCEEc-cCCCceEEEEEecCCeeEEEEEEcCCCCCCCe-eEEEEEEcCCeeeEEEEEEEE
Q psy670          334 KVKAKP---MP-EIVWFHEGKEL-QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       334 ~~~~~p---~~-~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      .+.+.|   .+ .+.|+++|..+ .............+......|.|.+++.+|+| .|+|.|.|..|....++.|.|
T Consensus       251 ~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            999988   77 89999999884 33433333322333345568999999999999 999999999999988888876

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.98  E-value=4.3e-31  Score=250.03  Aligned_cols=274  Identities=18%  Similarity=0.274  Sum_probs=195.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC-----ceEEEeCCEee-------------cCCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP-----DIIWYQGTKVI-------------EDTGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~-----~v~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      .+.+..|++++|.|.+.+.+.+     .+.|+|++...             ....+..+............+|.|.+++.
T Consensus         9 ~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (313)
T 4fqp_A            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (313)
T ss_dssp             EECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCG
T ss_pred             EEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCCh
Confidence            3456789999999999876655     48999987532             22223332222112222234799999999


Q ss_pred             CCCeEEEEEEEc-CCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeec
Q psy670          173 DDGGNYRCNACN-SIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKE  250 (540)
Q Consensus       173 ~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~  250 (540)
                      +|+|.|+|.+.+ ..+.....+.|.+..       .|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++..+..
T Consensus        89 ~D~G~Y~C~v~~~~~~~~~~~~~l~v~~-------~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~  161 (313)
T 4fqp_A           89 EDEGNYTCLFVTFPQGSRSVDIWLRVLA-------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN  161 (313)
T ss_dssp             GGCEEEEEEEECSSSCEEEEEEEECCBB-------CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred             hhCEEEEEEEeeccCcceeeeeeeeecc-------CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence            999999998864 445566677776664       55555545555667788999999875 689999999999887754


Q ss_pred             cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE--EEEEeeccCCCCCCCeEE-eCCceEEeeCCC
Q psy670          251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL--NLNIEAEAEPEGDPPTFI-EKPKIRSEQGGK  327 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~  327 (540)
                      ...... .........+.|.|.....+|+|.|+|.|.|..+......  .|.|..       +|.+. .......+.+|+
T Consensus       162 ~~~~~~-~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~v~~~~~~~~~~~~g~  233 (313)
T 4fqp_A          162 TSQVPG-FLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-------PPEVSISGYDNNWYLGQN  233 (313)
T ss_dssp             EEEEEC-SSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-------EEEEEEECCCSCEETTCC
T ss_pred             cceeee-ecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-------CCccccccccceeecCCC
Confidence            322111 1111222345789999999999999999999876654444  444433       45543 333445566789


Q ss_pred             eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .++|.|.+.|+|.| .|.|+++|..+.....      ..+.    +|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       234 ~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~------~~~~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          234 EATLTCDARSNPEPTGYNWSTTMGPLPPFAV------AQGA----QLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             CEEEEEEEEEESCCCEEEEEETTBSCCTTEE------EETT----EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEEEecCCCCCcEEEEEECCEECCCceE------EeCC----EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999998 6999999988765321      1222    79999999999999999999999999999999998


Q ss_pred             EEE
Q psy670          407 MVR  409 (540)
Q Consensus       407 ~~~  409 (540)
                      ..|
T Consensus       304 ~~P  306 (313)
T 4fqp_A          304 EGP  306 (313)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            744

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.98  E-value=1.9e-34  Score=286.12  Aligned_cols=362  Identities=12%  Similarity=0.205  Sum_probs=222.5

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee----c-------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI----E-------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~----~-------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|++  ..+    .             ...++.+..+.   ....++|.|.+
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   84 (434)
T 1igy_B            8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDR---SSNTANIHLSS   84 (434)
T ss_dssp             CCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCG---GGCBBCEEECS
T ss_pred             CeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEEC---CCCEEEEEECC
Confidence            45788999999999997764  6789999853  221    0             01233322211   11223799999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEE
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKL  247 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~  247 (540)
                      ++.+|+|.|+|.+.+..+.....+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+. |.+ .|.|++++..
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B           85 LTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKT---TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             BCGGGCSEECCCCSSSSCCCCCCEECEECCSCC---BCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             CChHHCEEEEEEEEccccccCCceEEEEccCCC---CCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            999999999999988644434445666653211   13444322222345789999999999885 776 9999999875


Q ss_pred             eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-------cCCCCCCCeEEeCCce
Q psy670          248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-------AEPEGDPPTFIEKPKI  320 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-------~~~~~~~p~~~~~~~~  320 (540)
                      +........ .........+.|.|.++..+| |.|+|.|.|..+.......+.+...       +.+ ..+..++..+..
T Consensus       162 ~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~-~~p~v~~~~p~~  238 (434)
T 1igy_B          162 SGVHTFPAV-LQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVP-EVSSVFIFPPKP  238 (434)
T ss_dssp             SSEEECCCE-ECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCS-SSCCEEEECCCH
T ss_pred             CCeEecCce-ecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCC-cCcEEEEeCCCh
Confidence            321100000 111112223579999999888 9999999999887544444432210       000 012223333332


Q ss_pred             EE-eeCCCeEEEEEEEEccC----CCeEEEEECCEEccCCCceEEEEEecC-CeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          321 RS-EQGGKLVVMECKVKAKP----MPEIVWFHEGKELQQTDRISWNVTLKG-DKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       321 ~~-~~~g~~v~l~C~~~~~p----~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      .. +.+|+.+.|.|.+.|.+    .+.|.|++++..+............++ ....+.|.|..+..+|+|.|+|.|.|..
T Consensus       239 ~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  318 (434)
T 1igy_B          239 KDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA  318 (434)
T ss_dssp             HHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSS
T ss_pred             HHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCC
Confidence            22 77899999999999874    358999999977653321111000111 1112368999999999999999999988


Q ss_pred             eeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEE
Q psy670          395 GELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVI  474 (540)
Q Consensus       395 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l  474 (540)
                      |.......+.+..                                          ....+|.+...+......+|+.++|
T Consensus       319 ~~~~~~~~v~~~~------------------------------------------~~~~~P~v~~~~~~~~~~~~~~~~L  356 (434)
T 1igy_B          319 FPAPIEKTISKTK------------------------------------------GKPRAPQVYTIPPPKEQMAKDKVSL  356 (434)
T ss_dssp             CSSCCCCCCCCCC------------------------------------------SCCBCCCCEEECCCSSSSSSSEEEE
T ss_pred             CCCceeEEEeccC------------------------------------------CCCcCCEEEEECCCHHHhcCCcEEE
Confidence            8643222221100                                          0112565543332222346788999


Q ss_pred             EEEEeeecCC--ceEEEecCeecCCC----------CeE----EEEEEec---CCeEEEEEEeeeeee
Q psy670          475 ECKVMSMYEP--SVTWMKEKNTVKED----------NKH----VVHIEQV---KDVSMNFELWLGIVE  523 (540)
Q Consensus       475 ~C~v~g~p~~--~v~W~~~~~~l~~~----------~~~----~~~~~~~---~~g~y~c~~~~~~~~  523 (540)
                      .|.+.|.+++  +|+|+|+|..+...          ..+    .+.+...   +.|.|+|.+....+.
T Consensus       357 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          357 TCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            9999996443  89999999887432          111    1233333   479999999876654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.98  E-value=1.5e-30  Score=243.77  Aligned_cols=254  Identities=24%  Similarity=0.413  Sum_probs=189.5

Q ss_pred             cceeeeCcceeEEeecceeeeee-cCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce-eee
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYH-KGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SST   85 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~~~   85 (540)
                      +.|.+.|.|       +.+.|+| +|..+..+.++.+.....      .++|.|.+++.+|+|.|+|.+.|..|.. ...
T Consensus        24 l~C~~~~~p-------~~v~W~~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~   90 (291)
T 2wim_A           24 FTCTAIGEP-------ESIDWYNPQGEKIISTQRVVVQKEGV------RSRLTIYNANIEDAGIYRCQATDAKGQTQEAT   90 (291)
T ss_dssp             EEEEEESCC-------SEEECBCTTCCBCCCBTTEEEEEETT------EEEEEECSCCGGGCEEEEEEEECSSSCEEEEE
T ss_pred             EEEEEeCCC-------CceEEECCCCcCccCCCcEEEecCCC------EEEEEEccCCcccCEEEEEEEecccCceEEEE
Confidence            569998876       4799999 788887777776654432      3689999999999999999999988765 346


Q ss_pred             EEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC--CceEEEEeecCcceEEE
Q psy670           86 VNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLL  163 (540)
Q Consensus        86 ~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~  163 (540)
                      +.|.|...+ .+.        ....+..+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .+.....     +.   
T Consensus        91 ~~l~v~~~~-~~~--------~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~---  153 (291)
T 2wim_A           91 VVLEIYQKL-TFR--------EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-----NN---  153 (291)
T ss_dssp             EEEEEECCC-BCC--------SCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT-----TS---
T ss_pred             EEEEecCCc-ceE--------eCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc-----CC---
Confidence            666665443 111        1123456889999999999999999999999999877542  2322211     11   


Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeE
Q psy670          164 RLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEV  239 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v  239 (540)
                      .|.|.+++.+|+|.|+|.+.+..+..  ...+.+.+..       +|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+
T Consensus       154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  226 (291)
T 2wim_A          154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  226 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB-------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred             CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc-------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence            69999999999999999999876443  4556666664       444443333  456788999999999999999999


Q ss_pred             EEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670          240 KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE  304 (540)
Q Consensus       240 ~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  304 (540)
                      .|++++..+.........  ...    ..|.|.++..+|+|.|+|.|.|..|.....+.+.|...
T Consensus       227 ~W~~~g~~~~~~~~~~~~--~~~----~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~  285 (291)
T 2wim_A          227 SWFRNGKLIEENEKYILK--GSN----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ  285 (291)
T ss_dssp             EEEETTEECCCTTTEEEC--STT----CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             EEEECCEECcCCccEEEc--CCc----cEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence            999999998776654432  111    27999999999999999999999999998888888763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.98  E-value=5.2e-30  Score=240.03  Aligned_cols=257  Identities=18%  Similarity=0.346  Sum_probs=192.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe-CCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK-ADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~-~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      ++.+...|....+.+|+.+.|.|.+.+.| .+.+.|++ +|..+... .+..+.....   ....|.|.+++.+|+|.|+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~   78 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIYK   78 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEET---TEEEEEECSCCGGGCEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCC---CeEEEEEecCCCCCCEEEE
Confidence            34555566777788999999999999876 68999999 77766543 2333322211   1248999999999999999


Q ss_pred             EEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670          284 CNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV  362 (540)
Q Consensus       284 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  362 (540)
                      |.+.+..|. ....+.+.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........
T Consensus        79 C~~~n~~g~~~~~~~~l~v~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  151 (291)
T 1qz1_A           79 CVVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV  151 (291)
T ss_dssp             EEEECTTSCEEEEEEEEEEEC-------CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE
T ss_pred             EEEEcCCCCeeEEEEEEEeec-------cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE
Confidence            999998764 34555566554       6677777777889999999999999999999999999998876543333222


Q ss_pred             EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccC
Q psy670          363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN  440 (540)
Q Consensus       363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (540)
                      ..++     .|.|.++..+|+|.|+|.|.|..+..  ...+.|.|..                                 
T Consensus       152 ~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~---------------------------------  193 (291)
T 1qz1_A          152 LSNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV---------------------------------  193 (291)
T ss_dssp             CTTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE---------------------------------
T ss_pred             ccCC-----cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec---------------------------------
Confidence            2222     69999999999999999999976433  4455666655                                 


Q ss_pred             cccccceeeeeeeeceeecC--CcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCC----e-------EEE---E
Q psy670          441 PQFKKYSVLTLSVVPVIREV--PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDN----K-------HVV---H  504 (540)
Q Consensus       441 ~~~~~~~~~~~~~~p~i~~~--~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~----~-------~~~---~  504 (540)
                                   +|.+...  +....+.+|+.++|.|.+.|.|.|.++|+++|..+....    +       ..+   .
T Consensus       194 -------------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~  260 (291)
T 1qz1_A          194 -------------PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN  260 (291)
T ss_dssp             -------------EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECS
T ss_pred             -------------CCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEe
Confidence                         5555543  335678899999999999999999999999999887653    1       123   3


Q ss_pred             EEecCCeEEEEEEeeeeeee
Q psy670          505 IEQVKDVSMNFELWLGIVEK  524 (540)
Q Consensus       505 ~~~~~~g~y~c~~~~~~~~~  524 (540)
                      +...|.|.|+|.+.......
T Consensus       261 v~~~d~G~Y~C~a~N~~G~~  280 (291)
T 1qz1_A          261 VDKNDEAEYVCIAENKAGEQ  280 (291)
T ss_dssp             CCGGGCEEEEEEEEETTEEE
T ss_pred             cChhcCEEEEEEEEeCCCce
Confidence            44478999999998765443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=5.8e-31  Score=249.51  Aligned_cols=274  Identities=16%  Similarity=0.218  Sum_probs=199.3

Q ss_pred             CccccCCCeEEEEEEEeecC-CCceEEEeCCEeec----CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIE----DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ...+.+|+.+.|.|.+.+.| .+.+.|+|++..+.    ...+.....         ..|.|.+++.+|+|.|+|.+.|.
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~   84 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK---------EKLWFVPAKVEDSGHYYCVVRNS   84 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS---------SBEECTTCCGGGCSCCEECCCSS
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC---------CeEEECCCChhhCEEEEEEEeCC
Confidence            45688999999999998877 77999999986432    122322211         17999999999999999999998


Q ss_pred             CceeEEEEEEEEecCcCCCCCCCeeccC---CceeecCCCCeEEEEEEe------cccCCCeEEEEeCCEEeeccCceEE
Q psy670          186 IGESNANIALNFQGGENGAGFAPSFIEK---PRIIPNESGTLIQMKCKC------SAKPRPEVKWFKADKLVKESSKIKI  256 (540)
Q Consensus       186 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~v~W~~~~~~l~~~~~~~~  256 (540)
                      .+.....+.+.+...      +|.+...   .....+..|+.+.|.|.+      .+.|.+.+.|++++..+........
T Consensus        85 ~g~~~~~~~v~v~~~------~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~  158 (315)
T 1itb_B           85 SYCLRIKISAKFVEN------EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS  158 (315)
T ss_dssp             SCCCCEECCCEEECC------CTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE
T ss_pred             ceEEEEEEEEEEeCC------CCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe
Confidence            877666666655432      2332211   123457789999999998      7889999999999999865433222


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCcEEEEEEEE-cCCCCeee-eEEEEEeeccCCCCCCCeEEeCCce-EEeeCCCeEEEEE
Q psy670          257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVK-NEFGESNA-NLNLNIEAEAEPEGDPPTFIEKPKI-RSEQGGKLVVMEC  333 (540)
Q Consensus       257 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~~~~~-~~~~~g~~v~l~C  333 (540)
                       ...      ..|.|.+++.+|+|.|+|.+. +..|.... ...+.+.........+|.+...+.. ..+.+|+.+.|.|
T Consensus       159 -~~~------~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C  231 (315)
T 1itb_B          159 -GVK------DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLIC  231 (315)
T ss_dssp             -EET------TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEE
T ss_pred             -ecC------ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEE
Confidence             111      179999999999999999999 67776522 2233332222222236666655543 4688999999999


Q ss_pred             EEEccCCCeEEEEECCEEccCCCceEEE----EEecC----CeeEEEEEEcCCCCCC-CeeEEEEEEcCCeeeEEEEEEE
Q psy670          334 KVKAKPMPEIVWFHEGKELQQTDRISWN----VTLKG----DKYHIRLEVKDPRKED-TGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       334 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~----~~~~~----~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      .+.|.|.|.+.|+++|..+.........    .....    ......|.|.+++.+| +|.|+|.|.|..|....++.|.
T Consensus       232 ~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~  311 (315)
T 1itb_B          232 NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  311 (315)
T ss_dssp             EEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEE
T ss_pred             EEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEE
Confidence            9999999999999999999876542221    11100    0234589999999999 9999999999999999999888


Q ss_pred             EE
Q psy670          405 IE  406 (540)
Q Consensus       405 V~  406 (540)
                      |.
T Consensus       312 v~  313 (315)
T 1itb_B          312 YP  313 (315)
T ss_dssp             CC
T ss_pred             ec
Confidence            75

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=3.7e-29  Score=252.29  Aligned_cols=361  Identities=14%  Similarity=0.207  Sum_probs=215.6

Q ss_pred             CccccCCCeEEEEEEEeecCC----CceEEEeC--CEee---c---C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPM----PDIIWYQG--TKVI---E---D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~--~~~~---~---~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ...+.+|++++|.|.+.+.+.    ..+.|||.  |..+   .   .          ..++.+..+   .....++|.|.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~   85 (512)
T 1zvo_C            9 PGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVD---TSRNQFSLNLR   85 (512)
T ss_pred             CEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEec---CCCCEEEEEEC
Confidence            457889999999999976543    67999985  2211   0   0          123333221   11224589999


Q ss_pred             CCCCCCCeEEEEEEEcCCc-----------e--eEEEEEEEEecCcCCCCCCCeec-cCCcee-ecCCCCeEEEEEEecc
Q psy670          169 NPTKDDGGNYRCNACNSIG-----------E--SNANIALNFQGGENGAGFAPSFI-EKPRII-PNESGTLIQMKCKCSA  233 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~-~~~~g~~~~l~C~~~~  233 (540)
                      +++.+|+|.|.|.+.+..+           .  ....+.|.|.....   .+|.+. ..+... .+ .|+.+.|.|.+.+
T Consensus        86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~i~~~~~~~~~~~-~~~~v~L~C~~~g  161 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT---KAPDVFPIISGCRHPK-DNSPVVLACLITG  161 (512)
T ss_pred             cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC---cCCeEEeccCCccccc-CCCeEEEEEEEEe
Confidence            9999999999999987642           1  12345666663211   134433 122111 22 4689999999988


Q ss_pred             c-CCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE-----------EEE
Q psy670          234 K-PRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL-----------NLN  300 (540)
Q Consensus       234 ~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~-----------~l~  300 (540)
                      . |.+ .|.|++++.....................+.|.|.....+ .|.|+|.|.|..+......           .+.
T Consensus       162 ~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~  240 (512)
T 1zvo_C          162 YHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSV  240 (512)
T ss_pred             eecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEE
Confidence            5 765 8999996543210000001111122233457888887777 8999999999887654433           222


Q ss_pred             EeeccC---------------------------------------------CCCCCCeE-EeCCceEEeeCCCeEEEEEE
Q psy670          301 IEAEAE---------------------------------------------PEGDPPTF-IEKPKIRSEQGGKLVVMECK  334 (540)
Q Consensus       301 v~~~~~---------------------------------------------~~~~~p~~-~~~~~~~~~~~g~~v~l~C~  334 (540)
                      +...+.                                             ....+|.+ +..+....+.+|+.++|+|.
T Consensus       241 l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~  320 (512)
T 1zvo_C          241 PTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCF  320 (512)
T ss_pred             EeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEE
Confidence            321110                                             00123443 33334344667999999999


Q ss_pred             EEccCC--CeEEEEECCEEccCCCceE-EEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEE
Q psy670          335 VKAKPM--PEIVWFHEGKELQQTDRIS-WNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRF  410 (540)
Q Consensus       335 ~~~~p~--~~i~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  410 (540)
                      +.+.++  ..|+|+++|..+....... .....++. ...+.|.|.....+|.|.|+|.|.|..+... ...+....-  
T Consensus       321 v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~--  397 (512)
T 1zvo_C          321 VVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPA--  397 (512)
T ss_pred             EeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecC--
Confidence            998643  3899999999865221101 11111221 2345799999999999999999999876543 222221110  


Q ss_pred             EEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEE-EEEEEeeecCC--ceE
Q psy670          411 IKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVV-IECKVMSMYEP--SVT  487 (540)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~-l~C~v~g~p~~--~v~  487 (540)
                                                  .          ....+|.+...+...   .|+.+. |.|.+.|++++  .++
T Consensus       398 ----------------------------~----------~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~  436 (512)
T 1zvo_C          398 ----------------------------A----------QAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLM  436 (512)
T ss_pred             ----------------------------C----------CCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEE
Confidence                                        0          001145443322221   789999 99999996554  689


Q ss_pred             EEecCeecCCCCe-------------E----EEEEEecC---CeEEEEEEeeeeee
Q psy670          488 WMKEKNTVKEDNK-------------H----VVHIEQVK---DVSMNFELWLGIVE  523 (540)
Q Consensus       488 W~~~~~~l~~~~~-------------~----~~~~~~~~---~g~y~c~~~~~~~~  523 (540)
                      |+|||..+..+..             +    .+.+...+   .|.|+|.+....+.
T Consensus       437 W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~  492 (512)
T 1zvo_C          437 WLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR  492 (512)
T ss_pred             EEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence            9999998754311             1    22344444   88999998865544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.7e-32  Score=260.99  Aligned_cols=282  Identities=20%  Similarity=0.377  Sum_probs=140.5

Q ss_pred             CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ....+.+|+.+.|.|.+.+. |.+.+.|+|+|..+....++...         ...|.|.+++.+|+|.|+|.+.+. +.
T Consensus        16 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~-~~   85 (334)
T 1ry7_B           16 EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG---------PQRLQVLNASHEDSGAYSCRQRLT-QR   85 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec---------cceEEEeecccccCEEEEEEEEeC-Ce
Confidence            34568899999999999776 67899999999988665554332         138999999999999999999998 76


Q ss_pred             eEEEEEEEEecCcCCCC---------------CCCeeccC----CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEee
Q psy670          189 SNANIALNFQGGENGAG---------------FAPSFIEK----PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVK  249 (540)
Q Consensus       189 ~~~~~~l~v~~~~~~~~---------------~~p~~~~~----~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~  249 (540)
                      ....+.|.|...+....               .+|.+...    .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        86 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~  165 (334)
T 1ry7_B           86 VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR  165 (334)
T ss_dssp             ---------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCC
T ss_pred             EEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECc
Confidence            67777777765321100               12333221    223567789999999999999999999999998876


Q ss_pred             ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCe
Q psy670          250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKL  328 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~  328 (540)
                      .............   ...|.|.+++.+|+|.|+|.+.|..|.....+.+.|...+.   .+|.+.. .+....+.+|+.
T Consensus       166 ~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~G~~  239 (334)
T 1ry7_B          166 GEHRIGGIKLRHQ---QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSD  239 (334)
T ss_dssp             TTSSTTCCCCCTT---TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC---SSCBCCTTCSCCEEEESSCC
T ss_pred             ccccccceecccc---eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC---CCCceEecCCCceEEeCCCC
Confidence            5433211000011   12799999999999999999999988887777888765321   1233322 245667889999


Q ss_pred             EEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEEEecC-----CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          329 VVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNVTLKG-----DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       329 v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      +.|.|.+.+.|.+.+.|++    +|..+.............+     ......|.|.+++.+|+|.|+|.|.|..|....
T Consensus       240 v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  319 (334)
T 1ry7_B          240 VEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH  319 (334)
T ss_dssp             EEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEE
T ss_pred             EEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEE
Confidence            9999999999999999999    6766654332111111111     001126999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy670          400 NLTLNIEM  407 (540)
Q Consensus       400 ~~~l~V~~  407 (540)
                      ++.|.|..
T Consensus       320 ~~~l~V~~  327 (334)
T 1ry7_B          320 SAWLVVLP  327 (334)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            99999987

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=244.96  Aligned_cols=266  Identities=17%  Similarity=0.185  Sum_probs=187.5

Q ss_pred             eCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEee
Q psy670           13 EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE   92 (540)
Q Consensus        13 ~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~   92 (540)
                      .|.|.      +.+.|+|+|.++..+.++.+.....      ..+|.|.+++.+|+|.|+|.+.|..|... +..+.|..
T Consensus        27 ~~~p~------~~v~W~k~~~~i~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~   93 (312)
T 2y23_A           27 KMTPK------SEFSWSKDYVSTEDSPRLEVESKGN------KTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEE   93 (312)
T ss_dssp             SCCTT------CCEEEEETTEECTTCTTEEEEEETT------EEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHH
T ss_pred             CCCCC------cEEEEEECCEECCCCCCEEEEEeCC------EEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEee
Confidence            46777      9999999999999888888776433      36999999999999999999999887544 55555532


Q ss_pred             cCCccccC-CCCCCCCC---CCCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEE
Q psy670           93 EDGKLKVP-GGKAPRFP---KKPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus        93 ~~~~~~i~-~~~~~~~~---~~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      ......+. ....|.+.   .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.....   .....|.|
T Consensus        94 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~---~~~~~L~i  170 (312)
T 2y23_A           94 LKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN---TGIIEMFM  170 (312)
T ss_dssp             HHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT---TTEEEEEE
T ss_pred             eeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC---CCEEEEEE
Confidence            10000000 00001111   1245688999999999997 88999999999999998777666654321   12347999


Q ss_pred             cCCCCCCCeEEEEEEEcCCceeEEEEEEEEec-------C-----cCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670          168 NNPTKDDGGNYRCNACNSIGESNANIALNFQG-------G-----ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP  235 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-------~-----~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  235 (540)
                      .+++.+|+|.|+|.+.+........+.+....       .     +.....+|.+.... ...+.+|+.+.|.|.+.+.|
T Consensus       171 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p  249 (312)
T 2y23_A          171 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIK  249 (312)
T ss_dssp             SCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCC
T ss_pred             ccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCC
Confidence            99999999999999987554443333331000       0     00000124443222 35677999999999999998


Q ss_pred             CC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       236 ~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      .+ .+.|++++..+....+..+.      .....|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       250 ~~~~v~W~~~g~~~~~~~~~~~~------~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          250 KETHIVWYKDEREISVDEKHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             SSCEEEEEETTEEEEEECCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             CCCEEEEeeCCEECCCCCcEEEE------CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            87 99999999998765544432      11348999999999999999999999999888777765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=6.6e-31  Score=249.44  Aligned_cols=265  Identities=18%  Similarity=0.300  Sum_probs=194.8

Q ss_pred             cceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            8 KSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      +.|.+.|. |.      +.+.|+|+|..+..+.++++.  ..      ..+|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus        26 l~C~~~~~~p~------~~v~W~~~~~~~~~~~~~~~~--~~------~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~   91 (317)
T 2y25_A           26 LKCKVANIKKE------THIVWYKDEREISVDEKHDFK--DG------ICTLLITEFSKKDAGIYEVILKDDRGKDKSRL   91 (317)
T ss_dssp             EEEEEESCCTT------CEEEEEETTEEECCSCC-------C------CEEEEETTCCSTTCSCEEEEEESSSCEEEEEE
T ss_pred             EEEEEcCCCCC------CEEEEEECCeEcCCCCcEEEE--CC------eEEEEEccCCcccCeEEEEEEECCCCcEEEEE
Confidence            56888887 55      899999999999877776543  12      26899999999999999999999988776665


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEee----------cCCCceEEEeCCEeecCCCceEEEEeec
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEA----------SPMPDIIWYQGTKVIEDTGRIKMSKKSI  156 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~  156 (540)
                      .|.|...+..+.         ......+.+|+.+.|.|.+.+          .|.+.+.|+++|..+....+......  
T Consensus        92 ~l~v~~~~~~~~---------~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--  160 (317)
T 2y25_A           92 KLVDEAFKELMM---------EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--  160 (317)
T ss_dssp             CCSTHHHHHHHH---------HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC--
T ss_pred             EEEEecCccccc---------cCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc--
Confidence            555443220000         011234557777777777765          68899999999999877666555432  


Q ss_pred             CcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecC-------------cCCCCCCCeecc-CCceeecCCC
Q psy670          157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGG-------------ENGAGFAPSFIE-KPRIIPNESG  222 (540)
Q Consensus       157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-------------~~~~~~~p~~~~-~~~~~~~~~g  222 (540)
                         .....|.|.+++.+|+|.|+|.+.|..+.....+.+.+...             .......|.+.. .+....+.+|
T Consensus       161 ---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          161 ---GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             ---SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             ---CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence               12347999999999999999999999888887777765420             000111333333 3556678899


Q ss_pred             CeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          223 TLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       223 ~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +.+.|.|.+.+.|.+.+.|++++..+....+..+....   .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBT---TTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcC---CCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            99999999999999999999999998776665443221   123589999999999999999999999988888888876


Q ss_pred             e
Q psy670          303 A  303 (540)
Q Consensus       303 ~  303 (540)
                      .
T Consensus       315 ~  315 (317)
T 2y25_A          315 I  315 (317)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.5e-28  Score=247.96  Aligned_cols=381  Identities=12%  Similarity=0.164  Sum_probs=221.9

Q ss_pred             ccceeeeCcceeEEeecceeeeeec--Ceecc----------------cCCceEEEEecCccceeeEEEEEEcccccCCC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHK--GSLLK----------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS   68 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   68 (540)
                      .+.|.+.|.+.  ......+.|||.  |..+.                ...|+.+.....+    ...+|+|.+++.+|+
T Consensus        19 ~L~C~~~~~~~--~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~----~~~sL~I~~v~~~Ds   92 (512)
T 1zvo_C           19 SLTCIVSGGPI--RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSR----NQFSLNLRSMSAADT   92 (512)
T ss_pred             EEEEEEccccc--CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCC----CEEEEEECcCCHHHC
Confidence            46788887653  000157999986  32110                1234444332111    247999999999999


Q ss_pred             eeEEEEEEccCc----------c---eeeeEEEEEeecC-CccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC-
Q psy670           69 GEYKVIAKNKNG----------E---GSSTVNLNFSEED-GKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP-  132 (540)
Q Consensus        69 G~Y~C~~~~~~~----------~---~~~~~~l~v~~~~-~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~-  132 (540)
                      |.|.|.+.+..+          .   ....+.|.|...+ ..+.+..    . .........|+.+.|.|.+.+. |.+ 
T Consensus        93 g~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~----~-~~~~~~~~~~~~v~L~C~~~g~~P~p~  167 (512)
T 1zvo_C           93 AMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFP----I-ISGCRHPKDNSPVVLACLITGYHPTSV  167 (512)
T ss_pred             EEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEe----c-cCCcccccCCCeEEEEEEEEeeecCce
Confidence            999999987642          1   1234566665321 1111110    0 0001101246899999999876 765 


Q ss_pred             ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE-----------EEEEecCc
Q psy670          133 DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI-----------ALNFQGGE  201 (540)
Q Consensus       133 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~-----------~l~v~~~~  201 (540)
                      .+.|++++...... .........+.....+.|.|.....+ .|.|+|.+.|..+.....+           .+.+...+
T Consensus       168 ~v~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp  245 (512)
T 1zvo_C          168 TVTWYMGTQSQPQR-TFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP  245 (512)
T ss_pred             EEEEEcCcccCceE-ecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence            89999965431100 00000111122234457999988887 9999999999887654333           23332111


Q ss_pred             C---------------------------------------------CCCCCCee-ccCCceeecCCCCeEEEEEEeccc-
Q psy670          202 N---------------------------------------------GAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAK-  234 (540)
Q Consensus       202 ~---------------------------------------------~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-  234 (540)
                      .                                             ....+|.+ ...+....+.+|+.++|.|.+.++ 
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~  325 (512)
T 1zvo_C          246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD  325 (512)
T ss_pred             chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence            0                                             01123333 223333445679999999999885 


Q ss_pred             CC-CeEEEEeCCEEeeccCceEEEEecCC--CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCC
Q psy670          235 PR-PEVKWFKADKLVKESSKIKIIVNEQD--DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP  311 (540)
Q Consensus       235 p~-~~v~W~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~  311 (540)
                      |+ ..|+|+++|..+..............  ....+.|.|..+..+|.|.|+|.|.|..+... ...+...... ....+
T Consensus       326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~-~~~~~  403 (512)
T 1zvo_C          326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAA-QAPVK  403 (512)
T ss_pred             CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCC-CCCCC
Confidence            42 48999999988652211111111112  23345799999999999999999999876543 3233221100 00114


Q ss_pred             CeEEeCCceEEeeCCCeEE-EEEEEEccCCC--eEEEEECCEEccCCCceEEE--EEecCC--eeEEEEEEcCCCCCCCe
Q psy670          312 PTFIEKPKIRSEQGGKLVV-MECKVKAKPMP--EIVWFHEGKELQQTDRISWN--VTLKGD--KYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~-l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~--~~~~~~--~~~~~L~i~~~~~~d~G  384 (540)
                      |.+...+...   .|+.+. |.|.+.|++++  .|.|+++|..+.........  ...++.  ...+.|.|.....+|.|
T Consensus       404 p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g  480 (512)
T 1zvo_C          404 LSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPA  480 (512)
T ss_pred             CEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCC
Confidence            4443332221   788899 99999986443  68999999998764322111  122232  22357888888888899


Q ss_pred             eEEEEEEcCCeee--EEEEEEEE
Q psy670          385 LYKCNIKNFHGEL--NANLTLNI  405 (540)
Q Consensus       385 ~Y~C~a~n~~g~~--~~~~~l~V  405 (540)
                      .|+|.|.|.....  .....+.|
T Consensus       481 ~YtC~v~h~~l~~~~~~~~~~~v  503 (512)
T 1zvo_C          481 TYTCVVSHEDSRTLLNASRSLEV  503 (512)
T ss_pred             eEEEEEEecCCCCceEEEEEEEe
Confidence            9999999986543  33444444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=3e-30  Score=248.36  Aligned_cols=279  Identities=17%  Similarity=0.282  Sum_probs=169.6

Q ss_pred             CCccccCCCeEEEEEEEeecCC-----------CceEEEeCCEe------ec-CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          110 KPTIHQDGDLLVMECVLEASPM-----------PDIIWYQGTKV------IE-DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~-----------~~v~W~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ....+.+|+.+.|.|.+.+.|.           +.+.|+|++..      +. .....++...    .   ..|.|.+++
T Consensus        15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~----~---~~L~i~~~~   87 (349)
T 4dep_C           15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE----K---DVLWFRPTL   87 (349)
T ss_dssp             CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE----T---TEEEESSCC
T ss_pred             eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec----C---CEEEEccCC
Confidence            3456889999999999987554           89999998732      11 0011111111    1   179999999


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-----cccCCCeEEEEeCCE
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-----SAKPRPEVKWFKADK  246 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~~~~  246 (540)
                      .+|+|.|+|.+.|..+.....+.|.|...+..   .+.....+....+.+|+.+.|.|.+     .+.|.+.+.|++++.
T Consensus        88 ~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~  164 (349)
T 4dep_C           88 LNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSC---FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY  164 (349)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCTT---SCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred             hhhCEEEEEEEecCCceEEEEEEEEEecCCcc---cCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence            99999999999999888888888888863321   1111223445677899999999985     678899999999999


Q ss_pred             EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC-CCe---eeeEEEEEeeccCCCCCCCeEEeCCceE-
Q psy670          247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF-GES---NANLNLNIEAEAEPEGDPPTFIEKPKIR-  321 (540)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~-  321 (540)
                      .+.......  ...      ..|.|.+++.+|+|.|+|.+.|.. |..   ...+.+.|...+.. ..+|.+...+... 
T Consensus       165 ~l~~~~~~~--~~~------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~-~~~p~i~~~~~~~~  235 (349)
T 4dep_C          165 KIQNFNNVI--PEG------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN-AVPPVIHSPNDHVV  235 (349)
T ss_dssp             ECCSCSSEE--EET------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-CCSCEEC-------
T ss_pred             ECCCcccee--ecC------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-CCCCeEecCCCcee
Confidence            886543322  111      269999999999999999999976 433   44555555442111 1134444433322 


Q ss_pred             -EeeCCCeEEEEEEEE----ccCCCeEEEEECCEEccC-CCceEEEE--E---ecCCeeEEEEEEcCCCCCCC-eeEEEE
Q psy670          322 -SEQGGKLVVMECKVK----AKPMPEIVWFHEGKELQQ-TDRISWNV--T---LKGDKYHIRLEVKDPRKEDT-GLYKCN  389 (540)
Q Consensus       322 -~~~~g~~v~l~C~~~----~~p~~~i~W~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~L~i~~~~~~d~-G~Y~C~  389 (540)
                       .+.+|+.+.|.|.+.    +.|.+.+.|+++|..+.. ..+.....  .   .++.....+|.|.++..+|+ |.|+|.
T Consensus       236 ~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~  315 (349)
T 4dep_C          236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH  315 (349)
T ss_dssp             ---------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEE
T ss_pred             EEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEE
Confidence             678899999999999    568899999999988765 22221100  0   01222344699999999999 999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|..|....++.|.|..
T Consensus       316 a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          316 ARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             EECSSCEEEEECC-----
T ss_pred             EEcCCCcEEEEEEEeeec
Confidence            999999999999888875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=5.9e-30  Score=239.50  Aligned_cols=259  Identities=14%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|++++|.|.+.+    .+.|++++..+    .. ....  +     ..|.|.+++.+|+|.|+|.+.+  |. .
T Consensus        21 ~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~-~~~~--~-----~~L~i~~~~~~d~G~Y~C~~~n--g~-~   81 (290)
T 2o26_X           21 ELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EM-VENK--K-----NEWIQEKAEATRTGTYTCSNSN--GL-T   81 (290)
T ss_dssp             EEEEETTSCEEEEEECTT----EEEEEEECSSS----CE-EEEC--S-----SEEEETTCCGGGCEEEEEEESS--SC-E
T ss_pred             eEEEcCCCcEEEEECCCC----cEEEecCCcce----ee-ecCC--C-----ceEEEeccCHHhCeEEEEEeeC--Cc-c
Confidence            456889999999999866    89999998766    11 1100  1     3899999999999999999999  43 6


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC-CeEEEE-eCCEEeeccCceEEEEecCCCeEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWF-KADKLVKESSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~-~~~~~l~~~~~~~~~~~~~~~~~~~~  268 (540)
                      ..+.|.|..       +|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+.........  .. .    .
T Consensus        82 ~~~~l~V~~-------~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~--~~-~----~  146 (290)
T 2o26_X           82 SSIYVFVRD-------PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPN--PK-A----G  146 (290)
T ss_dssp             EEEEEEEEC-------SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEE--TT-T----E
T ss_pred             EEEEEEEeC-------CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeC--CC-C----C
Confidence            677777775       333334455667778999999999985 77 899994 678777654433222  11 1    6


Q ss_pred             EEEeCCCCCCcE-EEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEE
Q psy670          269 CEITDPIGPDSG-TYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVW  345 (540)
Q Consensus       269 l~i~~~~~~d~g-~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W  345 (540)
                      |.|.+++.+|+| .|+|.+.|..+.. +..+.+.|....   ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|
T Consensus       147 L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~---~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W  223 (290)
T 2o26_X          147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI---KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW  223 (290)
T ss_dssp             EEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC---CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEE
T ss_pred             EEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC---CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEE
Confidence            899999999999 9999999985542 234667665321   2277777777667888999999999999999996 999


Q ss_pred             EECCEEc----cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          346 FHEGKEL----QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       346 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +++|..+    ......... ..........|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          224 LKMNPQPQHIAQVKHNSWHR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEESSSEEECCCEECCEEEE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             ecCCCCCccceeeccccccc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            9998763    322222111 000112234899999999999999999999999999999888876

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.7e-31  Score=254.01  Aligned_cols=274  Identities=19%  Similarity=0.269  Sum_probs=140.4

Q ss_pred             cceeeeCc-ceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            8 KSYTLEGE-PTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      +.|.+.|. |.      +.+.|+|+|..+..+.++.+.          ..+|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus        28 l~C~~~~~~p~------~~v~W~k~g~~~~~~~~~~~~----------~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~   90 (334)
T 1ry7_B           28 LSCPPPGGGPM------GPTVWVKDGTGLVPSERVLVG----------PQRLQVLNASHEDSGAYSCRQRLT-QRVLCHF   90 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeeCCCCCCC------cceEEEECCeeCCCcccEEec----------cceEEEeecccccCEEEEEEEEeC-CeEEEEE
Confidence            56999887 45      799999999998776665541          258999999999999999999998 7666777


Q ss_pred             EEEEeecCCccc-----------cCCCCCCCC------CCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCce
Q psy670           87 NLNFSEEDGKLK-----------VPGGKAPRF------PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI  149 (540)
Q Consensus        87 ~l~v~~~~~~~~-----------i~~~~~~~~------~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~  149 (540)
                      .|.|...+....           .....+|.+      ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....+.
T Consensus        91 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  170 (334)
T 1ry7_B           91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI  170 (334)
T ss_dssp             ----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST
T ss_pred             EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccc
Confidence            777765431110           000011221      122346789999999999999999999999999888655432


Q ss_pred             EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEE
Q psy670          150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMK  228 (540)
Q Consensus       150 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~  228 (540)
                      ...... ..   ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+.   .+|.+.. .+....+.+|+.+.|.
T Consensus       171 ~~~~~~-~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~G~~v~l~  243 (334)
T 1ry7_B          171 GGIKLR-HQ---QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSDVEFH  243 (334)
T ss_dssp             TCCCCC-TT---TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC---SSCBCCTTCSCCEEEESSCCEEEC
T ss_pred             cceecc-cc---eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC---CCCceEecCCCceEEeCCCCEEEE
Confidence            111110 11   12799999999999999999999999888888888875332   1333332 3456677889999999


Q ss_pred             EEecccCCCeEEEEe----CCEEeeccCceEEEEecCC-----CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670          229 CKCSAKPRPEVKWFK----ADKLVKESSKIKIIVNEQD-----DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL  299 (540)
Q Consensus       229 C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  299 (540)
                      |.+.+.|.+.+.|++    +|..+..............     ......|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus       244 C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  323 (334)
T 1ry7_B          244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL  323 (334)
T ss_dssp             CCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEE
Confidence            999999999999999    6666544332111111000     0111369999999999999999999999999888888


Q ss_pred             EEeecc
Q psy670          300 NIEAEA  305 (540)
Q Consensus       300 ~v~~~~  305 (540)
                      .|...+
T Consensus       324 ~V~~~~  329 (334)
T 1ry7_B          324 VVLPAE  329 (334)
T ss_dssp             EEECSC
T ss_pred             EEEECC
Confidence            887643

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=1.7e-29  Score=236.30  Aligned_cols=265  Identities=15%  Similarity=0.202  Sum_probs=194.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.++|.|.+.+    .+.|++++....     ....     ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus        13 ~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-----~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   78 (289)
T 3ejj_X           13 ELVVEPGETVTLRCVSNG----SVEWDGPISPYW-----TLDP-----ESPGSTLTTRNATFKNTGTYRCTELEDPMAGS   78 (289)
T ss_dssp             EEEECTTCCEEEEEECSS----CCEEECSCSSSS-----EECC-----CSSCCEEEESSCCGGGCEEEEEECCC-----C
T ss_pred             eEEECCCCCEEEEEEeCC----cEEEccCCCceE-----EEec-----cCCccEEEEeeeccccCEEEEEEEeccCCcce
Confidence            356889999999999866    599998764321     1100     00112899999999999999999998888778


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEe-CCEEeeccCceEEEEecCCCeEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFK-ADKLVKESSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~  268 (540)
                      ..+.|.|...+      ..+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+..........  .     ..
T Consensus        79 ~~~~l~V~~~~------~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~-----~~  145 (289)
T 3ejj_X           79 TTIHLYVKDPA------HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP--W-----RG  145 (289)
T ss_dssp             EEEEEEECCSS------CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET--T-----TE
T ss_pred             eEEEEEEeCCC------cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC--C-----CC
Confidence            88888887522      1144555677888999999999999866654 99986 666665544443321  1     15


Q ss_pred             EEEeCCCCCCcEEEEEEEE-cCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVK-NEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWF  346 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~  346 (540)
                      |.|.+++.+|+|.|+|.+. +..+.....+.|.|....   ..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|+
T Consensus       146 L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~---~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~  222 (289)
T 3ejj_X          146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH---PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK  222 (289)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC---CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred             EEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC---CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence            9999999999999999999 444555666777776422   12677777777777789999999999998 789999999


Q ss_pred             ECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          347 HEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +++..+........  ..........|.|.+++.+|+|.|+|.|.|..|....++.|.+..
T Consensus       223 ~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          223 RGDTKLEIPLNSDF--QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             ETTEECCCCEEEEE--CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             ECCEEeeccCCccc--ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            99998865432211  111222244899999999999999999999999999999998865

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=4e-30  Score=243.76  Aligned_cols=265  Identities=17%  Similarity=0.229  Sum_probs=188.8

Q ss_pred             ccceeeeCcc-eeEEeecceeeeeecCeeccc----CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            7 LKSYTLEGEP-TKQIEANFQMNMYHKGSLLKM----SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         7 ~~~c~~~g~p-~~~~~~~~~~~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      .+.|.+.|.| .      +.|.|+|+|..+..    ..++..  . +       .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus        24 ~L~C~~~~~~~~------~~v~W~k~~~~~~~~~~~~~~~~~--~-~-------~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (315)
T 1itb_B           24 VRPCPLNPNEHK------GTITWYKDDSKTPVSTEQASRIHQ--H-K-------EKLWFVPAKVEDSGHYYCVVRNSSYC   87 (315)
T ss_dssp             CCBCCCCSCCCS------SCCCEECTTSCSCSCCCTTSSSEE--C-S-------SBEECTTCCGGGCSCCEECCCSSSCC
T ss_pred             EEEeeccCcCCC------ceEEEEeCCCcCccccccCCcEec--c-C-------CeEEECCCChhhCEEEEEEEeCCceE
Confidence            3679999888 4      79999999975422    233322  1 2       37999999999999999999998877


Q ss_pred             eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE------eecCCCceEEEeCCEeecCCCceEEEEee
Q psy670           82 GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL------EASPMPDIIWYQGTKVIEDTGRIKMSKKS  155 (540)
Q Consensus        82 ~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  155 (540)
                      ....+.+.+...++.+...    +. ......+.+|+.+.|.|.+      .|.|.+.+.|++++..+..........  
T Consensus        88 ~~~~~~v~v~~~~p~~~~~----~~-~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~--  160 (315)
T 1itb_B           88 LRIKISAKFVENEPNLCYN----AQ-AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--  160 (315)
T ss_dssp             CCEECCCEEECCCTTSSSC----GG-GEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE--
T ss_pred             EEEEEEEEEeCCCCCcccc----cc-cccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec--
Confidence            6655555544332111110    00 0112457889999999998      788999999999999886543221111  


Q ss_pred             cCcceEEEEEEEcCCCCCCCeEEEEEEE-cCCcee---EEEEEEEEecCcCCCCCCCeeccCCce-eecCCCCeEEEEEE
Q psy670          156 IGKDTYLLRLEINNPTKDDGGNYRCNAC-NSIGES---NANIALNFQGGENGAGFAPSFIEKPRI-IPNESGTLIQMKCK  230 (540)
Q Consensus       156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~  230 (540)
                         .   ..|.|.+++.+|+|.|+|.+. +..|..   ...+.+.+....  ...+|.+...+.. ..+.+|+.+.|.|.
T Consensus       161 ---~---~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~~~~g~~v~l~C~  232 (315)
T 1itb_B          161 ---K---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN--KPTRPVIVSPANETMEVDLGSQIQLICN  232 (315)
T ss_dssp             ---T---TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC--CCCCCEECSCCSEEEECCSSSCEEEEEE
T ss_pred             ---C---ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC--CCCCCEEecCCCCcEEEeCCCcEEEEEE
Confidence               1   189999999999999999999 677765   334444333211  1236777655543 57889999999999


Q ss_pred             ecccCCCeEEEEeCCEEeeccCceEE----EEecC----CCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCCeeeeEEEEE
Q psy670          231 CSAKPRPEVKWFKADKLVKESSKIKI----IVNEQ----DDTYEIICEITDPIGPD-SGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       231 ~~~~p~~~v~W~~~~~~l~~~~~~~~----~~~~~----~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      +.+.|.+.+.|+++|..+........    .....    .......|.|.+++.+| +|.|+|.|.|..|.....+.|.|
T Consensus       233 ~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          233 VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             EecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence            99999999999999999876543211    11111    01234589999999999 99999999999999988887776


Q ss_pred             e
Q psy670          302 E  302 (540)
Q Consensus       302 ~  302 (540)
                      .
T Consensus       313 ~  313 (315)
T 1itb_B          313 P  313 (315)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=242.14  Aligned_cols=280  Identities=16%  Similarity=0.276  Sum_probs=179.1

Q ss_pred             CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670          110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR  179 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  179 (540)
                      ....+.+|+++.|.|.+.+. |.+.+.|+|++....         ...+................|.|.+++.+|+|.|+
T Consensus        11 ~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (327)
T 2wng_A           11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY   90 (327)
T ss_dssp             SEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEE
T ss_pred             CceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEE
Confidence            34678899999999999887 888999999875321         01122221111111122337999999999999999


Q ss_pred             EEEEcCCcee-----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccC
Q psy670          180 CNACNSIGES-----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESS  252 (540)
Q Consensus       180 C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~  252 (540)
                      |.+.+..+..     ...+.|.|...+.    +|.+. .+ ...+.+|+.+.|.|.+.+.|++  .+.|+++|..+....
T Consensus        91 C~a~n~~~~~~~~~~~~~~~l~V~~~p~----~p~i~-~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~  164 (327)
T 2wng_A           91 CVKFRKGSPDTEFKSGAGTELSVRAKPS----APVVS-GP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ  164 (327)
T ss_dssp             EEEEESSTTCEEEEECCCEEEEEEBCCC----CCEEE-CC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred             EEeecCCCcceeEeecCcEEEEEEecCC----Cceee-cc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence            9999876531     2345677765332    34443 22 3567789999999999987655  899999999886543


Q ss_pred             ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe---eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCC
Q psy670          253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES---NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK  327 (540)
Q Consensus       253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~  327 (540)
                      .. .......+  ...+.|.|.....+|.|.|+|.+.|..+..   .....+.+..     ..+|.+...+..  +.+|+
T Consensus       165 ~~-~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v-----~~~P~i~~~~~~--~~~G~  236 (327)
T 2wng_A          165 TN-VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI-----RVPPTLEVTQQP--VRAEN  236 (327)
T ss_dssp             EE-EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB-----CBCCEEEEEEEC--CSSTT
T ss_pred             cc-cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc-----CCCCEEEEecCC--cCCCC
Confidence            22 11111222  223468888877778899999999987652   2233332222     125665544333  67899


Q ss_pred             eEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEE
Q psy670          328 LVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTL  403 (540)
Q Consensus       328 ~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  403 (540)
                      .+.|.|.+.|. |++ .+.|+++|..+............++. ...+.|.|..+..+|+|.|+|.|.|..+.. .+++.+
T Consensus       237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             CCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             cEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence            99999999995 444 89999999988653222111122222 223478999999999999999999998864 444443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=239.53  Aligned_cols=269  Identities=17%  Similarity=0.244  Sum_probs=189.1

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeCCEeecC-----------------CCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIED-----------------TGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      .+.+.+|++++|.|.+.+. +.+.+.|+|++.....                 ..+..+..    ......+|.|.+++.
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~   83 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN----YSLNDATITLHNIGF   83 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC----CSSSBCCEEECSCCG
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec----cCCCceEEEEccCCH
Confidence            3567799999999998544 4457999986432110                 01111111    011123799999999


Q ss_pred             CCCeEEEEEEEcC-CceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeec
Q psy670          173 DDGGNYRCNACNS-IGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKE  250 (540)
Q Consensus       173 ~d~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~  250 (540)
                      +|+|.|+|.+.+. .+.....+.+.+...+     .+.+...+.......|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~  158 (308)
T 4fom_A           84 SDSGKYICKAVTFPLGNAQSSTTVTVLVEP-----TVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMES  158 (308)
T ss_dssp             GGCEEEEEEEEETTTEEEEEEEEEEEEBCC-----EEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCE
T ss_pred             HHCEEEEEEEeeCCCcceeeeeEEEeeecc-----ccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccc
Confidence            9999999999886 4556666777766422     1222334445556678999999986 5799999999999987653


Q ss_pred             cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE--EEEEeeccCCCCCCCeEEeC-CceEEeeCCC
Q psy670          251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL--NLNIEAEAEPEGDPPTFIEK-PKIRSEQGGK  327 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~--~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~  327 (540)
                      ...   ..........+.|.|.++..+|.|.|+|.|.|..+......  .|.|..       +|.+... .....+..|+
T Consensus       159 ~~~---~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~~~~~~~~~~~~~~g~  228 (308)
T 4fom_A          159 TTT---SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-------APEVSVTGYDGNWFVGRK  228 (308)
T ss_dssp             EEE---ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-------EEEECCBCCCSCEETTCC
T ss_pred             ccc---eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-------CCeeEEcccceeeeeccc
Confidence            321   11112233345799999999999999999999877654443  344433       3444322 3344566789


Q ss_pred             eEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          328 LVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       328 ~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .++|.|.+.|.|.| .+.|++++..+......      .++.   .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus       229 ~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~------~~~~---~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          229 GVNLKCNADANPPPFKSVWSRLDGQWPDGLLA------SDNT---LHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             SCEEECCEEEESCEEEEECCBSSSCCCSSCBC------STTE---EECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             cEEEEEEEecCCCCcEEEEEECCeECCCcEEE------cCCe---EEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99999999999988 69999999877654321      1221   57788999999999999999999999999999998


Q ss_pred             E
Q psy670          407 M  407 (540)
Q Consensus       407 ~  407 (540)
                      .
T Consensus       300 ~  300 (308)
T 4fom_A          300 D  300 (308)
T ss_dssp             C
T ss_pred             c
Confidence            8

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=2.8e-29  Score=231.21  Aligned_cols=232  Identities=18%  Similarity=0.306  Sum_probs=180.1

Q ss_pred             ccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|+.+.|.|.+.+.|.+ .+.|+++|..+.....               .|.|.+++.+|+|.|+|.+.+..+.. 
T Consensus        11 ~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~---------------~l~i~~~~~~d~G~Y~C~~~~~~~s~-   74 (262)
T 3rjd_A           11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGEYRCQRGLSGRSD-   74 (262)
T ss_dssp             SEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEEESSSCCCC-
T ss_pred             EEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC---------------eEEEecCCcccCeEEEEEEecCCccc-
Confidence            467899999999999888887 9999999998864321               79999999999999999998765543 


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                       .+.|.|..       ++ +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....            ...|
T Consensus        75 -~~~l~v~~-------~~-~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~------------~~~l  133 (262)
T 3rjd_A           75 -PIQLEIHR-------GW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW------------NSNL  133 (262)
T ss_dssp             -CEEEEEEC-------SS-EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE------------CCCE
T ss_pred             -cEEEEEec-------cc-eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCC------------CCeE
Confidence             45566653       22 2223334556789999999999 6688889999999988743211            1268


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC-C----eEE
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-P----EIV  344 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~----~i~  344 (540)
                      .|.+++.+|+|.|+|.+.+..+.....+.+.|....    .+|.+...+ ...+.+|+.+.|.|.+.+.|. +    .+.
T Consensus       134 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~----~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~  208 (262)
T 3rjd_A          134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF----PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFS  208 (262)
T ss_dssp             EESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS----CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEE
T ss_pred             EEEECChhhCEEEEEEEeCCCCccccceEEEeccCC----CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEE
Confidence            999999999999999999988777777788887532    145555544 455788999999999999875 4    368


Q ss_pred             EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      |++++..+...        ....    .|.|.+++.+|+|.|+|.|.|..|..
T Consensus       209 w~~~~~~~~~~--------~~~~----~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          209 FYMGSKTLRGR--------NTSS----EYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EEETTEEEEEE--------ESCC----EEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             EEeCCcEeccc--------CCCc----eEEEEEechhhCeEEEEEEEcccCce
Confidence            99999877431        1111    79999999999999999999999864

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.97  E-value=6.2e-29  Score=236.79  Aligned_cols=248  Identities=17%  Similarity=0.209  Sum_probs=175.8

Q ss_pred             ecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCe-eEEEEEEccCcceeeeEEEEEeecCCccccC
Q psy670           22 ANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG-EYKVIAKNKNGEGSSTVNLNFSEEDGKLKVP  100 (540)
Q Consensus        22 ~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~  100 (540)
                      |.+.|.|+|++..+....+.    ..+       .+|.|.+++.+|+| .|+|.+.|..|.......+.+...++.. ..
T Consensus        66 p~~~v~W~k~~~~~~~~~~~----~~~-------~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~-~~  133 (329)
T 3oq3_B           66 KDNVVNWEKIGKTRRPLNRR----VKN-------GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSC-IP  133 (329)
T ss_dssp             TTCEEEEEECSSSCEECSTT----EET-------TEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSC-EE
T ss_pred             CCCeeEEEECCCCccccCce----eec-------ceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcE-ec
Confidence            44899999999877654443    123       38999999999999 9999999988765444433333322110 00


Q ss_pred             CCCCCCCCCCCccccCCCeEEEEEEEeecC-CCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          101 GGKAPRFPKKPTIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       101 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                             ......+.+|+.+.|.|.+.|.| .+.+.|+|++..+... .++... .        ..|.|.+++.+|+|.|
T Consensus       134 -------~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~--------~~L~I~~v~~~D~G~Y  197 (329)
T 3oq3_B          134 -------ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G--------QNLIIHNPELEDSGRY  197 (329)
T ss_dssp             -------EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T--------TEEEECSCCGGGCEEE
T ss_pred             -------cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C--------CEEEEeecChhhCEEE
Confidence                   01123467899999999999999 8999999999988533 232222 1        2899999999999999


Q ss_pred             EEEEEcC--Ccee----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC---CC-eEEEEeCCEEe
Q psy670          179 RCNACNS--IGES----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP---RP-EVKWFKADKLV  248 (540)
Q Consensus       179 ~C~~~~~--~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~-~v~W~~~~~~l  248 (540)
                      +|.+.|.  .|..    ...+.|.|...+..   ...+. .+....+.+|+.+.|.|.+.+.|   .+ .+.|++++..+
T Consensus       198 ~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~---~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDH---RFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEEEEECCTTSSSCEEEEEEEEEEEECCCCC---CEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             EEEEEecccCCCceeEEEeeEEEEEECCCCC---CCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            9999986  4432    33466777652210   01223 56667888999999999999987   67 88999999874


Q ss_pred             -eccCceEEEEecCCCeEEEEEEEeCCCCCCcE-EEEEEEEcCCCCeeeeEEEEE
Q psy670          249 -KESSKIKIIVNEQDDTYEIICEITDPIGPDSG-TYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       249 -~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~v  301 (540)
                       ....................|.|.+++.+|.| .|+|.|.|..|.....+.|.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          274 IGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence             33332222211122245668999999999999 999999999998887777665

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=247.92  Aligned_cols=279  Identities=18%  Similarity=0.262  Sum_probs=202.5

Q ss_pred             CCccccCCCeEEEEEEEe-------ecCCCceEEEeCCEee--cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEE
Q psy670          110 KPTIHQDGDLLVMECVLE-------ASPMPDIIWYQGTKVI--EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRC  180 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~-------~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  180 (540)
                      ....+.+|+.+.|.|.+.       +.|.+.+.|++++..+  ......++...    +   ..|.|.+++.+|+|.|+|
T Consensus        26 ~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~----~---~~L~i~~v~~~D~G~Y~C   98 (339)
T 3o4o_C           26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ----D---GALWLLPALQEDSGTYVC   98 (339)
T ss_dssp             CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEE----T---TEEEESSBCTTCCEEEEC
T ss_pred             eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEee----C---CeEEECCCCcccCEEEEE
Confidence            346788999999999997       8889999999998873  33212222211    1   179999999999999999


Q ss_pred             EEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE-----ecccCCCeEEEEeCCEEeeccCceE
Q psy670          181 NACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-----CSAKPRPEVKWFKADKLVKESSKIK  255 (540)
Q Consensus       181 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~v~W~~~~~~l~~~~~~~  255 (540)
                      .+.+..+.....+.|.|...+.     +..........+.+|+.+.|.|.     +.+.|.+.+.|++++..+.......
T Consensus        99 ~~~n~~g~~~~~~~l~V~~~~~-----~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           99 TTRNASYCDKMSIELRVFENTD-----AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             CEEETTEEEEEEEEEEEECSCG-----GGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEECCcceEEEEEEEEEEcCCC-----ccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            9999998888888888885321     11111223346778999999999     7788999999999998886553222


Q ss_pred             EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEE
Q psy670          256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVM  331 (540)
Q Consensus       256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l  331 (540)
                      ... ...    ..|.|.+++.+|+|.|+|.+.|..|.    ....+.|.|...  +...+|.+...+....+..|+.+.|
T Consensus       174 ~~~-~~~----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~--~~~~~P~i~~~~~~~~v~~G~~v~L  246 (339)
T 3o4o_C          174 LSV-RGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK--KEETIPVIISPLKTISASLGSRLTI  246 (339)
T ss_dssp             EEC-TTS----SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC--CCCCCCEECCCSCCCCCCCCSCCCC
T ss_pred             EEc-CCc----ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC--CCCCCCEEecCCceeEeccCCCEEE
Confidence            211 111    27999999999999999999998764    344555666543  2233666666666677889999999


Q ss_pred             EEEE---EccC-CCeEEEEECCEEccCCC---ceE----EEEEecC-CeeEEEEEEcCCCCCCC-eeEEEEEEcCCeeeE
Q psy670          332 ECKV---KAKP-MPEIVWFHEGKELQQTD---RIS----WNVTLKG-DKYHIRLEVKDPRKEDT-GLYKCNIKNFHGELN  398 (540)
Q Consensus       332 ~C~~---~~~p-~~~i~W~~~~~~~~~~~---~~~----~~~~~~~-~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~~  398 (540)
                      .|.+   .|.| .+.+.|+++|..+....   ...    .....++ ....+.|.|.+++.+|+ |.|+|.|.|..|...
T Consensus       247 ~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~  326 (339)
T 3o4o_C          247 PCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT  326 (339)
T ss_dssp             CCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred             EEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence            9999   8888 88999999998764321   111    1111122 22244799999999997 999999999999998


Q ss_pred             EEEEEEEEE
Q psy670          399 ANLTLNIEM  407 (540)
Q Consensus       399 ~~~~l~V~~  407 (540)
                      ..+.+.+..
T Consensus       327 ~~~~~~~~~  335 (339)
T 3o4o_C          327 LRTTVKEHH  335 (339)
T ss_dssp             CBCCCCC--
T ss_pred             EEEEhhHhc
Confidence            877776543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=5.4e-29  Score=237.75  Aligned_cols=267  Identities=18%  Similarity=0.250  Sum_probs=193.2

Q ss_pred             CccccCCCeEEEEEEEeec----CCCceEEEeCC--Ee-------------e--cCCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS----PMPDIIWYQGT--KV-------------I--EDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~----p~~~v~W~~~~--~~-------------~--~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.    +.+.+.|++++  ..             +  ....++.+..    ......+|.|.+
T Consensus        23 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~   98 (331)
T 3u83_A           23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR----PSFTDGTIRLSR   98 (331)
T ss_dssp             EEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS----CSSSBCCEEECS
T ss_pred             cEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc----cCCCCceEEEcc
Confidence            4568899999999999765    34479999954  11             1  1122332221    011123799999


Q ss_pred             CCCCCCeEEEEE-EEcCCceeEEEEEEEEecCcCCCCCCCee--ccCCceeecCCC---CeEEEEEE-ecccCCCeEEEE
Q psy670          170 PTKDDGGNYRCN-ACNSIGESNANIALNFQGGENGAGFAPSF--IEKPRIIPNESG---TLIQMKCK-CSAKPRPEVKWF  242 (540)
Q Consensus       170 ~~~~d~G~Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~~~p~~--~~~~~~~~~~~g---~~~~l~C~-~~~~p~~~v~W~  242 (540)
                      ++.+|+|.|+|. +.+..+.....+.|.|..       +|.+  ...+....+.+|   +.+.|.|. +.+.|.+.+.|+
T Consensus        99 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~  171 (331)
T 3u83_A           99 LELEDEGVYICEFATFPTGNRESQLNLTVMA-------KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWE  171 (331)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEE
T ss_pred             cCcccCcEEEEEEEecCCCccEEEEEEEEec-------CCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEE
Confidence            999999999998 455567777888888885       4433  224455667777   88999998 778999999999


Q ss_pred             eCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEE-eCCceE
Q psy670          243 KADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFI-EKPKIR  321 (540)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~  321 (540)
                      +++.......  ..............|.|.++..+|+|.|+|.+.|..+.....+.|.|..       +|.+. ..+...
T Consensus       172 ~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-------~P~~~~~~~~~~  242 (331)
T 3u83_A          172 TRLKGEAEYQ--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-------EPEVTIEGFDGN  242 (331)
T ss_dssp             ESSCCEEEEE--EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-------EEEEEEECCCSC
T ss_pred             cCCCCccccc--eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-------CCeEEEecCCCc
Confidence            9532211110  0111111222335799999999999999999999988877778887766       44444 333445


Q ss_pred             EeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEc-CCCCCCCeeEEEEEEcCCeeeEE
Q psy670          322 SEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVK-DPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      .+.+|+.+.|.|.+.+.|.+. +.|++++..+......      .+.    +|.|. ++..+|+|.|+|.|.|..|....
T Consensus       243 ~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~------~~~----~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~  312 (331)
T 3u83_A          243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA------QNR----TLFFKGPINYSLAGTYICEATNPIGTRSG  312 (331)
T ss_dssp             CBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEE------ETT----EEEECSCCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccccee------cCc----EEEEeCCCccccCeEEEEEEEeccccceE
Confidence            577899999999999999998 9999999887554211      122    79999 89999999999999999999999


Q ss_pred             EEEEEEEE
Q psy670          400 NLTLNIEM  407 (540)
Q Consensus       400 ~~~l~V~~  407 (540)
                      ++.|.|..
T Consensus       313 ~~~l~V~~  320 (331)
T 3u83_A          313 QVEVNITE  320 (331)
T ss_dssp             EEEECCBC
T ss_pred             EEEEEEec
Confidence            99998876

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.8e-28  Score=229.40  Aligned_cols=241  Identities=14%  Similarity=0.164  Sum_probs=176.7

Q ss_pred             eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670           25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA  104 (540)
Q Consensus        25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~  104 (540)
                      .+.|+|++..+.      .. ...+      ++|.|.+++.+|+|.|+|.+.|  |. ..++.|.|..++...       
T Consensus        39 ~i~W~~~~~~~~------~~-~~~~------~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~-------   95 (290)
T 2o26_X           39 FVRWTFKTYFNE------MV-ENKK------NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLF-------   95 (290)
T ss_dssp             EEEEEEECSSSC------EE-EECS------SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCB-------
T ss_pred             cEEEecCCccee------ee-cCCC------ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCccc-------
Confidence            699999998771      11 1112      4899999999999999999999  43 677788887654211       


Q ss_pred             CCCCCCCccccCCCeEEEEEEEeecCC-CceEEE-eCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEE
Q psy670          105 PRFPKKPTIHQDGDLLVMECVLEASPM-PDIIWY-QGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCN  181 (540)
Q Consensus       105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~  181 (540)
                        .......+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+....++.....     .   .|.|.+++.+|+| .|+|.
T Consensus        96 --~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~-----~---~L~i~~v~~~d~G~~Y~C~  164 (290)
T 2o26_X           96 --LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPK-----A---GITIKNVKRAYHRLCVRCA  164 (290)
T ss_dssp             --CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETT-----T---EEEEESCCGGGTTCEEEEE
T ss_pred             --ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCC-----C---CEEEecccHHHCCCEEEEE
Confidence              1233456779999999999975 77 899995 68888766544433321     1   7999999999999 99999


Q ss_pred             EEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEe----eccCceE
Q psy670          182 ACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLV----KESSKIK  255 (540)
Q Consensus       182 ~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l----~~~~~~~  255 (540)
                      +.|..+.. +..+.|.|....   ..+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+    .......
T Consensus       165 a~n~~~~~~s~~~~l~V~~~~---~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~  241 (290)
T 2o26_X          165 AQRDGTWLHSDKFTLKVREAI---KAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW  241 (290)
T ss_dssp             EEETTEEEECCCEEEEEECCC---CSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEE
T ss_pred             EEECCceEEeEEEEEEEEeCC---CCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccc
Confidence            99986553 335777776321   1377777777777889999999999999999886 9999998773    2222221


Q ss_pred             EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      .. ..........|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus       242 ~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          242 HR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             cc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            11 111223345899999999999999999999999887777777654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=3e-28  Score=224.58  Aligned_cols=239  Identities=17%  Similarity=0.268  Sum_probs=176.9

Q ss_pred             CccccCCCeEEEEEEEee-cCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC---CCCCCCe--EEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN---PTKDDGG--NYRCNA  182 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---~~~~d~G--~Y~C~~  182 (540)
                      +..+.+|+.++|.|.+.+ .|.+  .+.|+|+|..+..  .  ....   ..    .|.+..   ++.+|+|  .|+|.+
T Consensus        12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~--~~~~---~~----~~~~~~~~~~~~~d~g~g~Y~C~a   80 (265)
T 2oz4_A           12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--T--VTYG---ND----SFSAKASVSVTAEDEGTQRLTCAV   80 (265)
T ss_dssp             CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--E--EEEC---SS----EEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--e--EeeC---CC----eEEEEeecccccccCCcceEEEEE
Confidence            346889999999999988 7776  9999999998754  1  1111   11    333333   3677877  599999


Q ss_pred             EcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCC
Q psy670          183 CNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD  262 (540)
Q Consensus       183 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~  262 (540)
                      .|..+.....+.|.|...+     +|.+.  +....+.+|+.+.|.|.+.  |.+.+.|  +|..+....          
T Consensus        81 ~n~~~~~~~~~~l~V~~~p-----~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----------  139 (265)
T 2oz4_A           81 ILGNQSQETLQTVTIYSFP-----APNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----------  139 (265)
T ss_dssp             EETTEEEEEEEEEEEECCC-----CCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----------
T ss_pred             ecCCCCcEEEEEEEEeCCC-----Cceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----------
Confidence            9999888888888887532     23333  2344566799999999998  8899999  776663211          


Q ss_pred             CeEEEEEEEeCCCCCCcEEEEEEEEcCC-CCee---eeEEEEEeeccCCCCCCCeEEe--CCceEEeeCCCeEEEEEEEE
Q psy670          263 DTYEIICEITDPIGPDSGTYRCNVKNEF-GESN---ANLNLNIEAEAEPEGDPPTFIE--KPKIRSEQGGKLVVMECKVK  336 (540)
Q Consensus       263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~---~~~~l~v~~~~~~~~~~p~~~~--~~~~~~~~~g~~v~l~C~~~  336 (540)
                        ....|.+..+..+|+|.|+|.+.|.. |...   ..+.|.|...       |.+..  .+....+.+|+.+.|.|.+.
T Consensus       140 --~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~-------p~~~~~~~p~~~~v~~g~~~~l~C~~~  210 (265)
T 2oz4_A          140 --PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG-------PRLDERDCPGNWTWPENSQQTPMCQAW  210 (265)
T ss_dssp             --SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEE-------EECCGGGSCSEEEEETTCEECCCCCCE
T ss_pred             --CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeC-------CccccccCCCccEEcCCCeEEEEeECc
Confidence              12368899999999999999998644 6554   5667777663       33222  24466788999999999999


Q ss_pred             ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          337 AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       337 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|.+.|+++|..+...          +     .+.  .++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       211 g~P~p~i~W~~~~~~~~~~----------g-----~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          211 GNPLPELKCLKDGTFPLPI----------G-----ESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             EESCCEEEEEETTTEECCT----------T-----SCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCCeEEEEECCcccCCC----------C-----cEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            9999999999998732221          2     122  2677999999999999999999999998874

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=234.84  Aligned_cols=265  Identities=10%  Similarity=0.150  Sum_probs=167.9

Q ss_pred             ccceeeeCc-ceeEEeecceeeeeecCeeccc---------CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEE
Q psy670            7 LKSYTLEGE-PTKQIEANFQMNMYHKGSLLKM---------SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAK   76 (540)
Q Consensus         7 ~~~c~~~g~-p~~~~~~~~~~~W~k~~~~l~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~   76 (540)
                      .+.|.+.|. |.      +.|.|+|++.++..         ..++.+...... ......+|.|.+++.+|+|.|+|.+.
T Consensus        22 ~L~C~~~~~~p~------~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (327)
T 2wng_A           22 ILHCTVTSLIPV------GPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK-RENMDFSISISNITPADAGTYYCVKF   94 (327)
T ss_dssp             EECCEESCCCSC------CCEEEEESCSTTCEEEEETTSSCCTTEEECC---C-TTCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEccCcCCC------ceEEEEECCCCCceEEEEcCCCCcceeeeeccccc-ccCceeEEEEccCccccCeEEEEEee
Confidence            367999987 76      89999999864320         113332111000 00123589999999999999999999


Q ss_pred             ccCcc-----eeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCce
Q psy670           77 NKNGE-----GSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRI  149 (540)
Q Consensus        77 ~~~~~-----~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~  149 (540)
                      |..+.     ....+.|.|...+..+.+.        .....+.+|+.+.|.|.+.+.|.+  .+.|+++|..+......
T Consensus        95 n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--------~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~  166 (327)
T 2wng_A           95 RKGSPDTEFKSGAGTELSVRAKPSAPVVS--------GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTN  166 (327)
T ss_dssp             ESSTTCEEEEECCCEEEEEEBCCCCCEEE--------CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEE
T ss_pred             cCCCcceeEeecCcEEEEEEecCCCceee--------ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccc
Confidence            98653     1245677777655333322        112457889999999999887765  89999999988654321


Q ss_pred             EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee---EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEE
Q psy670          150 KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES---NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQ  226 (540)
Q Consensus       150 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  226 (540)
                      .......+.....+.|.|.....+|+|.|+|.+.|..+..   .....+.+..     ..+|.+...+..  +.+|+.+.
T Consensus       167 ~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v-----~~~P~i~~~~~~--~~~G~~v~  239 (327)
T 2wng_A          167 VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI-----RVPPTLEVTQQP--VRAENQVN  239 (327)
T ss_dssp             EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB-----CBCCEEEEEEEC--CSSTTCCE
T ss_pred             cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc-----CCCCEEEEecCC--cCCCCcEE
Confidence            1111111222334578898888888999999999987652   2333332221     125555443333  67899999


Q ss_pred             EEEEeccc-CCC-eEEEEeCCEEeeccCceEEEEecCC-CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          227 MKCKCSAK-PRP-EVKWFKADKLVKESSKIKIIVNEQD-DTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       227 l~C~~~~~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      |.|.+.+. |++ .+.|+++|..+.............+ ....+.|.|..+..+|+|.|+|.|.|..+..
T Consensus       240 l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          240 VTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             EEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            99999984 444 7999999998865432222222221 1223578899999999999999999998764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=2.2e-28  Score=231.40  Aligned_cols=268  Identities=16%  Similarity=0.145  Sum_probs=182.6

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeec-------------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLL-------------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKV   73 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   73 (540)
                      .+.|.+.|.|... ..-..+.|+|++...             ....++++.....+ ......+|+|.+++.+|+|.|+|
T Consensus        19 ~L~C~v~~~~~~~-~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C   96 (313)
T 4fqp_A           19 TLPCYLQVPNMEV-THVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG-AELRNASLRMFGLRVEDEGNYTC   96 (313)
T ss_dssp             EECCEEECCTTSC-CCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTT-SCCCBCCEEECSCCGGGCEEEEE
T ss_pred             EEEEEEECCCCCc-cceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccC-CcccceEEEECcCChhhCEEEEE
Confidence            3679998877610 000148999998632             22333333211111 11123579999999999999999


Q ss_pred             EEEc-cCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEE
Q psy670           74 IAKN-KNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKM  151 (540)
Q Consensus        74 ~~~~-~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~  151 (540)
                      ++.+ ..+..+..+.|.+...|....         ......+..|+.+.+.|.+ .+.|.+.+.|++++..+......  
T Consensus        97 ~v~~~~~~~~~~~~~l~v~~~P~~~~---------~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~--  165 (313)
T 4fqp_A           97 LFVTFPQGSRSVDIWLRVLAKPQNTA---------EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV--  165 (313)
T ss_dssp             EEECSSSCEEEEEEEECCBBCCEEEE---------EECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE--
T ss_pred             EEeeccCcceeeeeeeeeccCCccee---------cccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee--
Confidence            9864 445556666666655441111         1123346678889999987 57899999999998876533221  


Q ss_pred             EEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEE
Q psy670          152 SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMK  228 (540)
Q Consensus       152 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~  228 (540)
                      .....+.....+.|.|.....+|+|.|+|.+.|..+..  ...+.|.|..       +|.+.. ......+.+|+.++|.
T Consensus       166 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~v~~~~~~~~~~~~g~~v~l~  238 (313)
T 4fqp_A          166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-------PPEVSISGYDNNWYLGQNEATLT  238 (313)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE-------EEEEEEECCCSCEETTCCCEEEE
T ss_pred             eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc-------CCccccccccceeecCCCeEEEE
Confidence            11112223334579999999999999999999977654  4455555543       555532 3344456678999999


Q ss_pred             EEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670          229 CKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE  304 (540)
Q Consensus       229 C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  304 (540)
                      |.+.|+|.+ .|.|++++..+......    . .     .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...
T Consensus       239 C~~~g~P~p~~v~W~~~~~~l~~~~~~----~-~-----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          239 CDARSNPEPTGYNWSTTMGPLPPFAVA----Q-G-----AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG  305 (313)
T ss_dssp             EEEEEESCCCEEEEEETTBSCCTTEEE----E-T-----TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EEecCCCCCcEEEEEECCEECCCceEE----e-C-----CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence            999999988 69999999887543211    1 1     16999999999999999999999999888888888764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.96  E-value=6.2e-28  Score=225.66  Aligned_cols=263  Identities=16%  Similarity=0.192  Sum_probs=176.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--  188 (540)
                      ...+.+|++++|.|.+.+.    +.|++++..+..  +  ...  .........|.|.+++.+|+|.|+|.+.|..|.  
T Consensus         9 ~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--~--~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   78 (289)
T 3mjg_X            9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--E--MAK--AQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET   78 (289)
T ss_dssp             EEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--E--EEE--CTTSCEEEEEEECSCCGGGCEEEEEECCC------
T ss_pred             eEEEeCCCcEEEEEeccce----EEEECCCCCccc--c--eec--cCCCceeEEEEEccCChhhCEEEEEEEcccCCCCc
Confidence            4568899999999999764    999999987731  1  111  112223458999999999999999999998765  


Q ss_pred             -eEEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeE
Q psy670          189 -SNANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY  265 (540)
Q Consensus       189 -~~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~  265 (540)
                       ....+.|.|....     .+.+...+.  ...+.+|+.+.|.|.+. .|.+.+.|++.+.........    ... .  
T Consensus        79 ~~~~~~~v~v~~p~-----~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~----~~~-~--  145 (289)
T 3mjg_X           79 DERKRLYIFVPDPT-----VGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY----DHQ-R--  145 (289)
T ss_dssp             CCCEEEEEECCCTT-----CCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE----ETT-T--
T ss_pred             CcEEeEEEEEECCC-----cCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee----cCC-c--
Confidence             2344555544211     111111111  25678999999999998 677889998865221111100    001 1  


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEE
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIV  344 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~  344 (540)
                        .+.    ...|+|.|+|.+.+..+.. +....+.|...     .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.
T Consensus       146 --~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~  214 (289)
T 3mjg_X          146 --GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFE  214 (289)
T ss_dssp             --EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEE
T ss_pred             --Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceE
Confidence              111    2468999999999766543 33345555432     24555555555678899999999999999999999


Q ss_pred             EEECCEEccCCCceEEEEEec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          345 WFHEGKELQQTDRISWNVTLK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |++++................ ......+|.|.+++.+|+|.|+|.|.|..|....++.|+|..
T Consensus       215 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          215 WTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             EECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             EEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            998876544322222111111 133455899999999999999999999999999999999987

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=1.3e-28  Score=236.92  Aligned_cols=273  Identities=17%  Similarity=0.249  Sum_probs=161.8

Q ss_pred             cceeeeCcce-----eEEeecceeeeeecCeecc----c---CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEE
Q psy670            8 KSYTLEGEPT-----KQIEANFQMNMYHKGSLLK----M---SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIA   75 (540)
Q Consensus         8 ~~c~~~g~p~-----~~~~~~~~~~W~k~~~~l~----~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   75 (540)
                      +.|.+.|.|.     ....|.+.+.|+|++....    .   ....++... +       .+|.|.+++.+|+|.|+|.+
T Consensus        27 L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~-------~~L~i~~~~~~D~G~Y~C~a   98 (349)
T 4dep_C           27 IKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-K-------DVLWFRPTLLNDTGNYTCML   98 (349)
T ss_dssp             EECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE-T-------TEEEESSCCGGGCEEEEEEE
T ss_pred             EEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec-C-------CEEEEccCChhhCEEEEEEE
Confidence            5688887653     0023448999999995221    0   112222221 2       38999999999999999999


Q ss_pred             EccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-----eecCCCceEEEeCCEeecCCCceE
Q psy670           76 KNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-----EASPMPDIIWYQGTKVIEDTGRIK  150 (540)
Q Consensus        76 ~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-----~~~p~~~v~W~~~~~~~~~~~~~~  150 (540)
                      .|..+.....+.|.|...+. ...    ..........+.+|+.+.|.|.+     .+.|.+.+.|+|++..+....++.
T Consensus        99 ~n~~~~~~~~~~l~V~~~~~-~~~----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~  173 (349)
T 4dep_C           99 RNTTYCSKVAFPLEVVQKDS-CFN----SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI  173 (349)
T ss_dssp             ECSSCEEEEEEEEEEECCCT-TSC----CSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE
T ss_pred             ecCCceEEEEEEEEEecCCc-ccC----cccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee
Confidence            99988888888888876441 110    01111223467899999999984     678999999999999886543332


Q ss_pred             EEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-cee---EEEEEEEEecCcCCCCCCCeeccCCcee--ecCCCCe
Q psy670          151 MSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-GES---NANIALNFQGGENGAGFAPSFIEKPRII--PNESGTL  224 (540)
Q Consensus       151 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~l~v~~~~~~~~~~p~~~~~~~~~--~~~~g~~  224 (540)
                      ...         ..|.|.+++.+|+|.|+|.+.|.. +..   ...+.|.|...+.. ..+|.+...+...  .+.+|+.
T Consensus       174 ~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~-~~~p~i~~~~~~~~~~v~~G~~  243 (349)
T 4dep_C          174 PEG---------MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN-AVPPVIHSPNDHVVYEKEPGEE  243 (349)
T ss_dssp             EET---------TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-CCSCEEC---------------
T ss_pred             ecC---------CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-CCCCeEecCCCceeEEEecCCc
Confidence            221         279999999999999999999976 443   56677777643211 1145554444322  6788999


Q ss_pred             EEEEEEec----ccCCCeEEEEeCCEEeec-cCceEEE---E-ec-CCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCe
Q psy670          225 IQMKCKCS----AKPRPEVKWFKADKLVKE-SSKIKII---V-NE-QDDTYEIICEITDPIGPDS-GTYRCNVKNEFGES  293 (540)
Q Consensus       225 ~~l~C~~~----~~p~~~v~W~~~~~~l~~-~~~~~~~---~-~~-~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~  293 (540)
                      +.|.|.+.    +.|.+.+.|++++..+.. .......   . .. ........|.|.+++.+|. |.|+|.|.|..|..
T Consensus       244 v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  323 (349)
T 4dep_C          244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV  323 (349)
T ss_dssp             -CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE
T ss_pred             EEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE
Confidence            99999998    578899999999988765 2111110   0 00 1122345699999999999 99999999999988


Q ss_pred             eeeEEEEEee
Q psy670          294 NANLNLNIEA  303 (540)
Q Consensus       294 ~~~~~l~v~~  303 (540)
                      ...+.|.|..
T Consensus       324 ~~~~~l~v~~  333 (349)
T 4dep_C          324 AKAAKVKQKV  333 (349)
T ss_dssp             EEECC-----
T ss_pred             EEEEEEeeec
Confidence            8887777754

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=6.3e-28  Score=225.63  Aligned_cols=247  Identities=15%  Similarity=0.205  Sum_probs=180.1

Q ss_pred             eeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCC
Q psy670           25 QMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKA  104 (540)
Q Consensus        25 ~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~  104 (540)
                      .+.|++++....     .......+      .+|.|.+++.+|+|.|+|.+.+..+..+..+.|.|..++..+..     
T Consensus        31 ~v~W~~~~~~~~-----~~~~~~~~------~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~-----   94 (289)
T 3ejj_X           31 SVEWDGPISPYW-----TLDPESPG------STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNL-----   94 (289)
T ss_dssp             CCEEECSCSSSS-----EECCCSSC------CEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEE-----
T ss_pred             cEEEccCCCceE-----EEeccCCc------cEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceec-----
Confidence            499998875321     11111222      58999999999999999999998888788888888765522111     


Q ss_pred             CCCCCCCccccCCCeEEEEEEEeecCCCc-eEEEe-CCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          105 PRFPKKPTIHQDGDLLVMECVLEASPMPD-IIWYQ-GTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       105 ~~~~~~~~~v~~G~~v~l~C~~~~~p~~~-v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                         ......+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....+.......        .|.|.+++.+|+|.|+|.+
T Consensus        95 ---~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X           95 ---LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------GFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             ---SCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT--------EEEESSCCGGGCEEEEEEE
T ss_pred             ---ccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC--------CEEEeecccccCEEEEEEE
Confidence               12455788999999999998776665 99986 67777665555443221        6999999999999999999


Q ss_pred             E-cCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEec
Q psy670          183 C-NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNE  260 (540)
Q Consensus       183 ~-~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~  260 (540)
                      . +..+.....+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+........  ..
T Consensus       164 ~~~~~~~~~~~~~l~V~~~~~---~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~  238 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVNRVHP---EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF--QD  238 (289)
T ss_dssp             EETTEEEECCCEEEEEESSCC---CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEE--CS
T ss_pred             EeCCCccccccEEEEEEECCC---CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCccc--cc
Confidence            9 4445556777787774221   2677776677777788999999999998 78999999999988765432211  12


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      ........|.|.+++.+|+|.|+|.|.|..|....++.|.+..
T Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~  281 (289)
T 3ejj_X          239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE  281 (289)
T ss_dssp             SSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred             ceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence            2223346899999999999999999999999998888887754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.96  E-value=3e-29  Score=240.32  Aligned_cols=263  Identities=16%  Similarity=0.267  Sum_probs=193.7

Q ss_pred             cceeee-------CcceeEEeecceeeeeecCeec--ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEcc
Q psy670            8 KSYTLE-------GEPTKQIEANFQMNMYHKGSLL--KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNK   78 (540)
Q Consensus         8 ~~c~~~-------g~p~~~~~~~~~~~W~k~~~~l--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~   78 (540)
                      +.|.+.       |.|.      +.|.|+|+|..+  ....+.++.. .++       +|.|.+++.+|+|.|+|.+.|.
T Consensus        38 L~C~~~~~~~~~~~~p~------~~v~W~k~~~~~~~~~~~~~~~~~-~~~-------~L~i~~v~~~D~G~Y~C~~~n~  103 (339)
T 3o4o_C           38 LRCPQVPYWLWASVSPR------INLTWHKNDSARTVPGEEETRMWA-QDG-------ALWLLPALQEDSGTYVCTTRNA  103 (339)
T ss_dssp             EECTTSCSSCCSTTSSC------CBCCCEESSCCSCCSCCSSSCEEE-ETT-------EEEESSBCTTCCEEEECCEEET
T ss_pred             EEeccccccccccCCCC------ceEEEEECCCCcccCccccccEEe-eCC-------eEEECCCCcccCEEEEEEEECC
Confidence            568887       7777      899999999874  3332344432 233       8999999999999999999999


Q ss_pred             CcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEE-----EeecCCCceEEEeCCEeecCC-CceEEE
Q psy670           79 NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECV-----LEASPMPDIIWYQGTKVIEDT-GRIKMS  152 (540)
Q Consensus        79 ~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~-----~~~~p~~~v~W~~~~~~~~~~-~~~~~~  152 (540)
                      .|.....+.|.|...+... .+      ....+..+.+|+.+.|.|.     +.+.|.+.+.|+++|..+... .++...
T Consensus       104 ~g~~~~~~~l~V~~~~~~~-~~------~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~  176 (339)
T 3o4o_C          104 SYCDKMSIELRVFENTDAF-LP------FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV  176 (339)
T ss_dssp             TEEEEEEEEEEEECSCGGG-HH------HHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC
T ss_pred             cceEEEEEEEEEEcCCCcc-cc------ccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc
Confidence            8888888888887654211 00      1122346789999999999     778899999999999988655 233222


Q ss_pred             EeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEE
Q psy670          153 KKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMK  228 (540)
Q Consensus       153 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~  228 (540)
                      .    ..   ..|.|.+++.+|+|.|+|.+.|..+    .....+.|.|.....  ..+|.+...+....+.+|+.+.|.
T Consensus       177 ~----~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~--~~~P~i~~~~~~~~v~~G~~v~L~  247 (339)
T 3o4o_C          177 R----GT---THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE--ETIPVIISPLKTISASLGSRLTIP  247 (339)
T ss_dssp             T----TS---SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC--CCCCEECCCSCCCCCCCCSCCCCC
T ss_pred             C----Cc---ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC--CCCCEEecCCceeEeccCCCEEEE
Confidence            1    11   1799999999999999999999876    356677777775432  135677666677788899999999


Q ss_pred             EEe---cccC-CCeEEEEeCCEEeecc---------CceEEEEecCCCeEEEEEEEeCCCCCCc-EEEEEEEEcCCCCee
Q psy670          229 CKC---SAKP-RPEVKWFKADKLVKES---------SKIKIIVNEQDDTYEIICEITDPIGPDS-GTYRCNVKNEFGESN  294 (540)
Q Consensus       229 C~~---~~~p-~~~v~W~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~  294 (540)
                      |.+   .+.| .+.+.|++++..+...         ..... .........+.|.|.+++.+|. |.|+|.|.|..|...
T Consensus       248 C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~  326 (339)
T 3o4o_C          248 CKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY-SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT  326 (339)
T ss_dssp             CCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC-CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEEC
T ss_pred             EEEECCCCCCCCceEEEEECCeecccccccccceecceEEe-cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceE
Confidence            999   8888 8899999998775422         11111 1112223344799999999997 999999999999877


Q ss_pred             eeEEEEE
Q psy670          295 ANLNLNI  301 (540)
Q Consensus       295 ~~~~l~v  301 (540)
                      ..+.+.+
T Consensus       327 ~~~~~~~  333 (339)
T 3o4o_C          327 LRTTVKE  333 (339)
T ss_dssp             CBCCCCC
T ss_pred             EEEEhhH
Confidence            6655543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=4.1e-28  Score=229.06  Aligned_cols=221  Identities=19%  Similarity=0.241  Sum_probs=161.7

Q ss_pred             EEEEEcccccCCCeeEEEEEEcc-CcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCc
Q psy670           56 AVLTIKNVQKSDSGEYKVIAKNK-NGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPD  133 (540)
Q Consensus        56 ~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~  133 (540)
                      ++|+|.+++.+|+|.|+|+|.+. .+..+..+.+.+...+....+.       .........|+.+.|.|.+ .|.|.+.
T Consensus        74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~l~C~~~~g~P~~~  146 (308)
T 4fom_A           74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIK-------GPDSLIDGGNETVAAICIAATGKPVAH  146 (308)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEE-------CSSCCCTTCSCEEEEEEEEEEEBSCCE
T ss_pred             eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeecccccccc-------ccceeEEcCCceEEEEEEecCCcCCce
Confidence            57999999999999999999886 4555666777776554222221       1123345678999999986 6889999


Q ss_pred             eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeec
Q psy670          134 IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFI  211 (540)
Q Consensus       134 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~  211 (540)
                      +.|++++..+.....    ..........+.|.|.++..+|+|.|+|.+.|..+..  ...+.|.|..       +|.+.
T Consensus       147 i~W~~~~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~-------~P~~~  215 (308)
T 4fom_A          147 IDWEGDLGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY-------APEVS  215 (308)
T ss_dssp             EEECCCSSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE-------EEEEC
T ss_pred             EEEEECCcccccccc----eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec-------CCeeE
Confidence            999999887643211    1112233344589999999999999999999987654  4455555553       45543


Q ss_pred             cC-CceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          212 EK-PRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       212 ~~-~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      .. .....+..|+.+.|.|.+.+.|.+ .+.|++++..+......      ...   ..|.|.+++.+|+|.|+|.|.|.
T Consensus       216 ~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~------~~~---~~l~i~~v~~~d~G~Y~C~A~N~  286 (308)
T 4fom_A          216 VTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA------SDN---TLHFVHPLTFNYSGVYICKVTNS  286 (308)
T ss_dssp             CBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC------STT---EEECCSCCCSCCCSEEEEEEEET
T ss_pred             EcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE------cCC---eEEEECCCChhhCEEEEEEEEeC
Confidence            33 334456678999999999999888 69999998877543211      111   25678899999999999999999


Q ss_pred             CCCeeeeEEEEEee
Q psy670          290 FGESNANLNLNIEA  303 (540)
Q Consensus       290 ~~~~~~~~~l~v~~  303 (540)
                      .|..+.++.|.|..
T Consensus       287 ~G~~~~~~~l~V~~  300 (308)
T 4fom_A          287 LGQRSDQKVIYISD  300 (308)
T ss_dssp             TEEEEEEEECCEEC
T ss_pred             CCcEEEEEEEEEEc
Confidence            99988888888876

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=228.89  Aligned_cols=264  Identities=14%  Similarity=0.213  Sum_probs=188.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|++++|.|.+.+.    +.|++++..     .....     .......|.|.+++.+|+|.|+|.+.+..+...
T Consensus        13 ~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~   78 (292)
T 4dkd_C           13 ELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLY-----SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS   78 (292)
T ss_dssp             SCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEEC-----CBTTEEEEEESSCCGGGCSCEEECCCC----CC
T ss_pred             eEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEe-----ccCceEEEEEcccccccCEEEEEEEccCCCCcc
Confidence            4578899999999999663    999976432     11111     111234899999999999999999999887777


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC--CeEEEEeC-CEEeeccCceEEEEecCCCeEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR--PEVKWFKA-DKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                      ..+.|.|...+      ..+...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+........  ... .    
T Consensus        79 ~~~~l~V~~~~------~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~--~~~-~----  144 (292)
T 4dkd_C           79 AAIHLYVKDPA------RPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSF--SPW-H----  144 (292)
T ss_dssp             EEECCEECCSS------CCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEEC--CSS-S----
T ss_pred             eEEEEEEcCcc------ccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccc--cCC-c----
Confidence            88888887521      12344455677889999999999987 43  78999997 444443333221  111 1    


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEE
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVW  345 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W  345 (540)
                      .|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|....   ..+|.+...+....+.+|+.+.|.|.+.+.|. +.+.|
T Consensus       145 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~---~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w  221 (292)
T 4dkd_C          145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI---PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFL  221 (292)
T ss_dssp             CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC---CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEEC
T ss_pred             eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC---CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEE
Confidence            38999999999999999999877654 336777776522   12667777676666779999999999998765 57889


Q ss_pred             EECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ++++..+........  .........+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       222 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          222 QHNNTKLAIPQQSDF--HNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             CBSSCCCCCCBEEEE--ETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             eCCCcccccCcccee--ccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            898876654333211  111112234899999999999999999999999999999998876

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=217.43  Aligned_cols=233  Identities=16%  Similarity=0.262  Sum_probs=177.4

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      |.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.....              .|.|.+++.+|+|.|+|.+
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~--------------~l~i~~~~~~d~G~Y~C~~   67 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP--------------SYRITSASVNDSGEYRCQR   67 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS--------------EEEESSCCGGGCEEEEEEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC--------------eEEEecCCcccCeEEEEEE
Confidence            455566667778899999999999998877 8999999988754321              6899999999999999999


Q ss_pred             EcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      .+..+..  .+.+.|..       ++.. ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+...        ..
T Consensus        68 ~~~~~s~--~~~l~v~~-------~~~~-~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------~~  129 (262)
T 3rjd_A           68 GLSGRSD--PIQLEIHR-------GWLL-LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HW  129 (262)
T ss_dssp             SSSCCCC--CEEEEEEC-------SSEE-EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EE
T ss_pred             ecCCccc--cEEEEEec-------cceE-ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc--------CC
Confidence            8865543  45556553       3333 33444567899999999999 67788899999999887421        11


Q ss_pred             CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCccccc
Q psy670          366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK  445 (540)
Q Consensus       366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (540)
                      +.    .|.|.+++.+|+|.|+|.|.|..+.....+.|.|...                                     
T Consensus       130 ~~----~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~-------------------------------------  168 (262)
T 3rjd_A          130 NS----NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL-------------------------------------  168 (262)
T ss_dssp             CC----CEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS-------------------------------------
T ss_pred             CC----eEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC-------------------------------------
Confidence            11    7999999999999999999999988888888888751                                     


Q ss_pred             ceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC-C----ceEEEecCeecCCCC-eEEE---EEEecCCeEEEEE
Q psy670          446 YSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE-P----SVTWMKEKNTVKEDN-KHVV---HIEQVKDVSMNFE  516 (540)
Q Consensus       446 ~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~-~----~v~W~~~~~~l~~~~-~~~~---~~~~~~~g~y~c~  516 (540)
                            ..+|.+...+ ...+.+|+.++|.|.+.|.|. +    .+.|++++..+.... ...+   .+...|.|.|+|.
T Consensus       169 ------~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  241 (262)
T 3rjd_A          169 ------FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCE  241 (262)
T ss_dssp             ------SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEE
T ss_pred             ------CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEE
Confidence                  1155555544 445778999999999999876 4    378999999886321 1122   4566789999999


Q ss_pred             Eeee
Q psy670          517 LWLG  520 (540)
Q Consensus       517 ~~~~  520 (540)
                      +...
T Consensus       242 a~n~  245 (262)
T 3rjd_A          242 AATE  245 (262)
T ss_dssp             EEET
T ss_pred             EEcc
Confidence            9854

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.95  E-value=5.2e-27  Score=223.95  Aligned_cols=263  Identities=15%  Similarity=0.169  Sum_probs=182.8

Q ss_pred             cceeeeCcceeEEeecceeeeeecCee---------------c--ccCCceEEEEecCccceeeEEEEEEcccccCCCee
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSL---------------L--KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE   70 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~---------------l--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   70 (540)
                      +.|.+.|.++  ..+.+.+.|+|++..               +  ....++.+.....     ...+|.|.+++.+|+|.
T Consensus        34 L~C~~~~~~~--~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~-----~~~~L~I~~v~~~D~G~  106 (331)
T 3u83_A           34 LHCSFANPLP--SVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSF-----TDGTIRLSRLELEDEGV  106 (331)
T ss_dssp             ECCBCSSCCS--SCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSS-----SBCCEEECSCCGGGCEE
T ss_pred             EeeecCCCCC--CCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCC-----CCceEEEcccCcccCcE
Confidence            5688877621  012278999996521               1  1223333320011     13579999999999999


Q ss_pred             EEEE-EEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCC---CeEEEEEE-EeecCCCceEEEeCCEeecC
Q psy670           71 YKVI-AKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDG---DLLVMECV-LEASPMPDIIWYQGTKVIED  145 (540)
Q Consensus        71 Y~C~-~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G---~~v~l~C~-~~~~p~~~v~W~~~~~~~~~  145 (540)
                      |+|. +.+..+.....+.|.|...+. +.+.      .......+.+|   +.+.|.|. ..+.|.+.+.|++++.....
T Consensus       107 Y~C~~~~~~~~~~~~~~~l~V~~~p~-~~~~------~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~  179 (331)
T 3u83_A          107 YICEFATFPTGNRESQLNLTVMAKPT-NWIE------GTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAE  179 (331)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEBCCE-EEEE------ECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEE
T ss_pred             EEEEEEecCCCccEEEEEEEEecCCc-ceee------cCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccc
Confidence            9998 556567777788888877552 2111      01233456677   88999998 68899999999996322110


Q ss_pred             CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCe
Q psy670          146 TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTL  224 (540)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~  224 (540)
                      .   .......+.......|.|.++..+|+|.|+|.+.|..+.....+.|.|..       +|.+. ..+....+.+|+.
T Consensus       180 ~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-------~P~~~~~~~~~~~~~~g~~  249 (331)
T 3u83_A          180 Y---QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-------EPEVTIEGFDGNWYLQRMD  249 (331)
T ss_dssp             E---EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE-------EEEEEEECCCSCCBTTCCC
T ss_pred             c---ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec-------CCeEEEecCCCceEeCCCe
Confidence            0   01111112222335799999999999999999999998888888888874       45544 3334455788999


Q ss_pred             EEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEe-CCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          225 IQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT-DPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       225 ~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +.|.|.+.+.|.+. +.|++++..+......    ..      ..|.|. +++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       250 ~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~----~~------~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          250 VKLTCKADANPPATEYHWTTLNGSLPKGVEA----QN------RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCTTEEE----ET------TEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             EEEEEeCcCCCCCCEEEEEECCCccccccee----cC------cEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence            99999999999998 9999999887544211    11      278999 899999999999999999988888888776


Q ss_pred             ec
Q psy670          303 AE  304 (540)
Q Consensus       303 ~~  304 (540)
                      ..
T Consensus       320 ~~  321 (331)
T 3u83_A          320 EA  321 (331)
T ss_dssp             C-
T ss_pred             cc
Confidence            53

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=2.3e-27  Score=224.75  Aligned_cols=266  Identities=15%  Similarity=0.238  Sum_probs=175.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-----
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-----  186 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-----  186 (540)
                      ..+.+|++++|.|.+.+. .+.+.|+|+|..+.......      ..   ...|.|.+++.+|+|.|+|.+.+..     
T Consensus        33 ~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~------~~---~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~  102 (316)
T 3vh8_G           33 AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGR------IF---QESFNMSPVTTAHAGNYTCRGSHPHSPTGW  102 (316)
T ss_dssp             SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHC------CB---SSCEEECSCCGGGCEEEEEEEBCSSSSSSB
T ss_pred             CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCC------cc---eEEEEECCCCcccCeEEEEEEEcCCCCcce
Confidence            357799999999999776 67999999988753311000      00   1279999999999999999998632     


Q ss_pred             ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      +..+..+.|.|.....    +|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+.........   ......
T Consensus       103 ~~~s~~~~l~V~~~~~----~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~  173 (316)
T 3vh8_G          103 SAPSNPVVIMVTGNHR----KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI---HDGVSK  173 (316)
T ss_dssp             CCCCCCEEEEEECSSC----CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE---ETTEEE
T ss_pred             ecCCCcEEEEEecCCC----CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee---cCCCce
Confidence            2234556777764221    45555444433 67899999999995 456689999999876432211110   112234


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP  341 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  341 (540)
                      ..|.|.+++.+|+|.|+|.+.|..+..     +..+.|.|....    .+|.+...+.. .+.+|+.++|.|.+. .|.+
T Consensus       174 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~----~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~  247 (316)
T 3vh8_G          174 ANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY----EKPSLSAQPGP-KVQAGESVTLSCSSR-SSYD  247 (316)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS----CCCEEEEESCS-CCCTTSCCEEEEEES-SCCS
T ss_pred             EEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC----CCCeEEeCCCC-eecCCCcEEEEEECC-CCCc
Confidence            579999999999999999999987642     455666665422    25555554433 567899999999997 5778


Q ss_pred             eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-----eEEEEEEEEEE
Q psy670          342 EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-----LNANLTLNIEM  407 (540)
Q Consensus       342 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~  407 (540)
                      .+.|+++|..+......   ...........|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|..
T Consensus       248 ~~~W~k~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  313 (316)
T 3vh8_G          248 MYHLSREGGAHERRLPA---VRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG  313 (316)
T ss_dssp             EEEEEETTSSCCEEEEC---EECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred             EEEEEECCCcCCCceec---eeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence            99999999766432111   111222233589999998  999999999997653     35556666654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=215.95  Aligned_cols=255  Identities=19%  Similarity=0.283  Sum_probs=183.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.++|.|.+.|.|.+.+.|++++..+... .+.......    ...+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus        13 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~   88 (305)
T 2nzi_A           13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK----GGYHQLIIASVTDDDATVYQVRATNQGGSV   88 (305)
T ss_dssp             CEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEET----TTEEEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred             ceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECC----CCEEEEEEccCChhhCeEEEEEEEcCCCCc
Confidence            457889999999999999999999999999988654 333332211    123489999999999999999999999988


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      ...+.|.|...+..  ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.+.....    ...|
T Consensus        89 ~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~l  162 (305)
T 2nzi_A           89 SGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSL  162 (305)
T ss_dssp             EEEEEEEECEEEEE--CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSS----EEEE
T ss_pred             cceEEEEEecCCcc--CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCC----ceEE
Confidence            88888888752210  01222223345667789999999999999999999999998887666555443221    2478


Q ss_pred             EEeC-CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEE--------------EEE
Q psy670          270 EITD-PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVM--------------ECK  334 (540)
Q Consensus       270 ~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l--------------~C~  334 (540)
                      .|.+ +...|.|.|+|.|.|..|.....+.+.|...+.    +|....    .....+..+.|              .|.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~p~~~~----~~~~~~~~v~l~w~~p~~~g~~~i~~y~  234 (305)
T 2nzi_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD----PPRGVK----VSDVSRDSVNLTWTEPASDGGSKITNYI  234 (305)
T ss_dssp             EETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCC----CCEEEE----EESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred             EEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCC----CCCCce----eeeccCCEEEEEEcCCccCCCCceeEEE
Confidence            9999 999999999999999999988888888876543    222111    11112344444              444


Q ss_pred             EEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          335 VKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       335 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      +...+.+...|.+.+...             ..    .|.|.++...+.|.|+|.|.|..|....+
T Consensus       235 v~~~~~~~~~w~~~~~~~-------------~~----~~~i~~l~~~~~y~~~~~A~N~~G~~~~S  283 (305)
T 2nzi_A          235 VEKCATTAERWLRVGQAR-------------ET----RYTVINLFGKTSYQFRVIAENKFGLSKPS  283 (305)
T ss_dssp             EEEEETTSCCEEEEEEES-------------SS----EEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred             EEEecCCCCccEECcccc-------------Cc----eEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence            444444444554433221             11    78999999999999999999999976544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=8.3e-27  Score=214.88  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=168.7

Q ss_pred             ecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEe---CCCCCCcE--EEEEEEEcC
Q psy670          218 PNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEIT---DPIGPDSG--TYRCNVKNE  289 (540)
Q Consensus       218 ~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g--~y~C~~~~~  289 (540)
                      .+.+|+.+.|.|.+.+ .|.+  .+.|++++..+..    ....  ...    .+.+.   .++..|.|  .|+|.+.|.
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~--~~~----~~~~~~~~~~~~~d~g~g~Y~C~a~n~   83 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTY--GND----SFSAKASVSVTAEDEGTQRLTCAVILG   83 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEE--CSS----EEEEEEEEEECGGGCEEEEEEEEEEET
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEee--CCC----eEEEEeecccccccCCcceEEEEEecC
Confidence            5678999999999998 7776  9999999988754    1111  111    23333   33667777  599999999


Q ss_pred             CCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCee
Q psy670          290 FGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY  369 (540)
Q Consensus       290 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  369 (540)
                      .+.....+.|.|...+     +|.+..  ....+.+|+.+.|.|.+.  |.+.+.|  +|..+.....            
T Consensus        84 ~~~~~~~~~l~V~~~p-----~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~------------  140 (265)
T 2oz4_A           84 NQSQETLQTVTIYSFP-----APNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGP------------  140 (265)
T ss_dssp             TEEEEEEEEEEEECCC-----CCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSS------------
T ss_pred             CCCcEEEEEEEEeCCC-----Cceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCC------------
Confidence            8888778888887643     344443  344577899999999997  8899999  7776633221            


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEEcCC-eeeE---EEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCccccc
Q psy670          370 HIRLEVKDPRKEDTGLYKCNIKNFH-GELN---ANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKK  445 (540)
Q Consensus       370 ~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (540)
                      ...|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|..                                      
T Consensus       141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~--------------------------------------  182 (265)
T 2oz4_A          141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY--------------------------------------  182 (265)
T ss_dssp             EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE--------------------------------------
T ss_pred             cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe--------------------------------------
Confidence            2268899999999999999998644 5544   667777776                                      


Q ss_pred             ceeeeeeeeceeec--CCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeee
Q psy670          446 YSVLTLSVVPVIRE--VPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVE  523 (540)
Q Consensus       446 ~~~~~~~~~p~i~~--~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~  523 (540)
                              +|.+..  .+....+.+|+.++|.|.+.|.|.|.++|+|+|..+..... ...+...|.|.|+|.+.+...+
T Consensus       183 --------~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~-~~~v~~~d~G~Y~C~a~N~~G~  253 (265)
T 2oz4_A          183 --------GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-SVTVTRDLEGTYLCRARSTQGE  253 (265)
T ss_dssp             --------EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-CEECCGGGCEEEEEEEEETTEE
T ss_pred             --------CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc-EEEeehhhCeEEEEEEECCCCc
Confidence                    555443  35677889999999999999999999999999984443332 2457789999999999985544


Q ss_pred             e
Q psy670          524 K  524 (540)
Q Consensus       524 ~  524 (540)
                      .
T Consensus       254 ~  254 (265)
T 2oz4_A          254 V  254 (265)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=1.3e-24  Score=212.39  Aligned_cols=340  Identities=19%  Similarity=0.208  Sum_probs=216.3

Q ss_pred             ccceeeeCcceeEEeecceeeeeec--Ceeccc-----CCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccC
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHK--GSLLKM-----SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKN   79 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~--~~~l~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~   79 (540)
                      .+.|.+.|.|.      +.|.|+|+  |..+..     ..++.+.....      .++|.|.+++.+|+|.|+|.|.|..
T Consensus        19 ~l~C~~~g~p~------p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A           19 TLVCDAEGEPI------PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG------SSSLHIKDVKLSDSGRYDCEAASRI   86 (389)
T ss_dssp             EEEEEEECSSC------CEEEEEETTTTEEECC--CCSSSSEEEEECSS------EEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             EEEEEeecccC------CeEEEEeCCCCceeccCcCCCCCeEEEeccCC------cceEEEcccChhhCEEEEEEEEeCC
Confidence            36799999998      89999999  888765     35555543222      3799999999999999999999999


Q ss_pred             cceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecC
Q psy670           80 GEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIG  157 (540)
Q Consensus        80 ~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~  157 (540)
                      |..+..+.|.|...| .+..        ......+.+|+.+.|.|.+.|.|.+.+.|+++|..+....  +......   
T Consensus        87 g~~~~~~~l~V~~~P-~~~~--------~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~---  154 (389)
T 2jll_A           87 GGHQKSMYLDIEYAP-KFIS--------NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST---  154 (389)
T ss_dssp             CEEEEEEEEEEEEEE-EECC--------SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC---
T ss_pred             CCcceEEEEEEEeCC-EEec--------CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc---
Confidence            998888999888654 2211        1122357899999999999999999999999999987654  3333221   


Q ss_pred             cceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----
Q psy670          158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA----  233 (540)
Q Consensus       158 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----  233 (540)
                        .....|.|.++..+|+|.|+|.+.|..|.....+.+.+...+.    +|...    ......+..+.|.|....    
T Consensus       155 --~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~P~~~----~~~~~~~~~~~l~w~~p~~~~g  224 (389)
T 2jll_A          155 --GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS----SPYGV----KIIELSQTTAKVSFNKPDSHGG  224 (389)
T ss_dssp             --SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----CCEEE----EEEEECSSCEEEEEECCSCCTT
T ss_pred             --CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----CCcce----EEeeccCCEEEEEEeCCCCCCC
Confidence              1123899999999999999999999999988888877754322    22110    111223567899998532    


Q ss_pred             cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCC
Q psy670          234 KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDP  311 (540)
Q Consensus       234 ~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~  311 (540)
                      .|..  .+.|.+++....     ........   ...+.|.++...+.+.|+|.|.|..|....+..+.+...+.....+
T Consensus       225 ~pi~~y~v~~~~~~~~~~-----~~~~~~~~---~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~  296 (389)
T 2jll_A          225 VPIHHYQVDVKEVASEIW-----KIVRSHGV---QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSP  296 (389)
T ss_dssp             SCEEEEEEEEEETTCSCC-----EEEECSTT---CSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCC
T ss_pred             cceEEEEEEEEECCCccc-----EEeeccCC---cceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCC
Confidence            2222  477887664211     11111111   1268899999999999999999998865443333333222111113


Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEcc---CCCe--EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAK---PMPE--IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      |.+.     .....+..+.|.......   +...  |.|...+..-  ... ....  .+..  ..+.|..+.......|
T Consensus       297 p~~~-----~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~--~~~-~~~~--~~~~--~~~~i~~L~~~t~Y~~  364 (389)
T 2jll_A          297 PSIH-----GQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKED--QWL-EKKV--QGNK--DHIILEHLQWTMGYEV  364 (389)
T ss_dssp             CCEE-----EEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-------CCB-CCEE--CTTC--CEEEECSCCTTCEEEE
T ss_pred             Cccc-----cccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCc--cee-Eeec--cCCc--ceEEeCCcCCCCEEEE
Confidence            3221     112356677777763211   1122  2332211100  000 0011  1111  1577888887777788


Q ss_pred             EEEEEcCCeeeEEE
Q psy670          387 KCNIKNFHGELNAN  400 (540)
Q Consensus       387 ~C~a~n~~g~~~~~  400 (540)
                      +..|.|..|....+
T Consensus       365 ~V~A~n~~G~s~~s  378 (389)
T 2jll_A          365 QITAANRLGYSEPT  378 (389)
T ss_dssp             EEEEEC-CCBCCCE
T ss_pred             EEEEEcCCcCCCce
Confidence            89999998875443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.95  E-value=3.6e-27  Score=223.94  Aligned_cols=272  Identities=13%  Similarity=0.159  Sum_probs=171.1

Q ss_pred             CeEEEEEEEeec-C-CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          118 DLLVMECVLEAS-P-MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       118 ~~v~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      +.+.|.|.+.+. | .+.|.|+|+|..+.............+.....+.|.|.+...+|+|.|+|.|.|..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            699999999876 4 46899999999886543211111112222334578998888889999999999987655444332


Q ss_pred             EEecCcCCCCCCCe-eccCCceeecCCCCeEEEEEEeccc-CCC---eEEEEeCC-EEeeccCceEEEEecCCCeEEEEE
Q psy670          196 NFQGGENGAGFAPS-FIEKPRIIPNESGTLIQMKCKCSAK-PRP---EVKWFKAD-KLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       196 ~v~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      .+..    ....|. +...+....+.+|+.+.|.|.+.+. |.+   .|.|++++ ..+..................+.|
T Consensus       105 ~~~~----~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L  180 (323)
T 2wqr_A          105 CADS----NPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTL  180 (323)
T ss_dssp             CCCS----SGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEE
T ss_pred             CCCC----CCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEE
Confidence            1111    011232 2344445557789999999999885 555   89999975 433222111110111111234579


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH  347 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~  347 (540)
                      .|.+++.+|+|.|+|.+.|..+....  .+.|..... ...+|.+...+.......|+.++|.|.+.| .|.+ .|.|++
T Consensus       181 ~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~-~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  257 (323)
T 2wqr_A          181 PVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSG-PRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLH  257 (323)
T ss_dssp             ECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCS-CCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCC-CCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEE
Confidence            99999999999999999997643322  333322100 112555443222212223999999999998 4543 899999


Q ss_pred             CCEEccCCCceEE--EEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          348 EGKELQQTDRISW--NVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       348 ~~~~~~~~~~~~~--~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +|..+........  ....++. ...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus       258 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          258 NEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            9998865421110  0111221 23457999999999999999999998876

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.94  E-value=7.8e-27  Score=221.64  Aligned_cols=272  Identities=12%  Similarity=0.111  Sum_probs=168.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      .++|.+.|.++    +.+.|+|+|||..+..+.........++ .....+.|.|.+.+.+|+|.|+|+|.|..+.....+
T Consensus        28 ~L~C~~~g~~P----~~~~v~W~k~g~~l~~~~~~~~~~~~~g-~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  102 (323)
T 2wqr_A           28 QLLCLVSGYTP----GTIQITWLEDGQVMDVDLSTASTTQEGE-LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST  102 (323)
T ss_dssp             EEEEEEEEECC----CCEEEEEEETTEECCGGGEEEEEEEETT-EEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred             EEEEEEeCeEC----CCeEEEEEECCEEcccceecCCcCccCC-cEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence            47899998632    1279999999999875533222222233 444567899999999999999999999876544332


Q ss_pred             EEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeec-CCC---ceEEEeCC-EeecCCCceEEEEeecCcceE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEAS-PMP---DIIWYQGT-KVIEDTGRIKMSKKSIGKDTY  161 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~-p~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~  161 (540)
                      .+.+......+.+.     ..+.....+.+|+.+.|.|.+.+. |.+   .|.|+|++ ..+........ ....+....
T Consensus       103 ~~~~~~~~~~p~v~-----~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~  176 (323)
T 2wqr_A          103 KKCADSNPRGVSAY-----LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTV  176 (323)
T ss_dssp             CCCCCSSGGGCEEE-----ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEE
T ss_pred             ecCCCCCCCCCEEE-----EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEE
Confidence            21111000011110     011122357799999999999875 555   89999965 44432221111 111112223


Q ss_pred             EEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eE
Q psy670          162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EV  239 (540)
Q Consensus       162 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v  239 (540)
                      .+.|.|.+++.+|+|.|+|.+.|..+.......+.+..   ....+|.+...+.......|+.++|.|.+.+ .|.+ .|
T Consensus       177 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v  253 (323)
T 2wqr_A          177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTS---GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISV  253 (323)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCC---SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccC---CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEE
Confidence            45899999999999999999999864332233322110   0112555433222222234999999999988 5543 89


Q ss_pred             EEEeCCEEeeccCceEE-EEecC--CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          240 KWFKADKLVKESSKIKI-IVNEQ--DDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       240 ~W~~~~~~l~~~~~~~~-~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .|+++|..+........ .....  .....+.|.|..+..+|+|.|+|.|.|....
T Consensus       254 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          254 QWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            99999998865421110 01111  2233457999999999999999999998765

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=7.5e-27  Score=223.78  Aligned_cols=279  Identities=14%  Similarity=0.221  Sum_probs=173.5

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...++.+..+.   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   85 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT---SASTAYVELSS   85 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET---TTTEEEEEECS
T ss_pred             CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec---CCCEEEEEECC
Confidence            45688999999999998763  578999996  33221                 12344433221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEE
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKL  247 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~  247 (540)
                      ++.+|+|.|+|.+.+..+.....+.|.|.....   .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECSSCC---BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEecCCC---CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            999999999999998654444556777763211   24444433333446789999999999985 65 79999999876


Q ss_pred             eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec-----------------cCCCCC
Q psy670          248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE-----------------AEPEGD  310 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~-----------------~~~~~~  310 (540)
                      +...........+......+.|.|.++..+| |.|+|.|.|..+.......+.+...                 ......
T Consensus       163 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~  241 (344)
T 1za6_B          163 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR  241 (344)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCB
T ss_pred             CceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCc
Confidence            4211100011111112233479999988878 9999999998775433332221100                 000122


Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.+...+.......|+.++|.|.+.|. | .+.|.|+++|..+............++. ...+.|.|.....+|+|.|+
T Consensus       242 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt  321 (344)
T 1za6_B          242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS  321 (344)
T ss_dssp             CCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEE
T ss_pred             CCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEE
Confidence            4554433221112346669999999985 4 3589999999887543221111122222 22346778777777899999


Q ss_pred             EEEEcCCee
Q psy670          388 CNIKNFHGE  396 (540)
Q Consensus       388 C~a~n~~g~  396 (540)
                      |.|.|....
T Consensus       322 C~a~~~~l~  330 (344)
T 1za6_B          322 CSVMHEALH  330 (344)
T ss_dssp             EEEECTTST
T ss_pred             EEEEcCCCC
Confidence            999997653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=8.4e-24  Score=206.52  Aligned_cols=263  Identities=19%  Similarity=0.313  Sum_probs=190.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ...+.+|+.+.|.|.+.|.|.+.+.|+|+  |..+..     ..++.+...     .....|.|.+++.+|+|.|+|.+.
T Consensus         9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~   83 (389)
T 2jll_A            9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-----HGSSSLHIKDVKLSDSGRYDCEAA   83 (389)
T ss_dssp             CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-----SSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-----CCcceEEEcccChhhCEEEEEEEE
Confidence            34567899999999999999999999999  888754     334443321     123489999999999999999999


Q ss_pred             cCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecC
Q psy670          184 NSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQ  261 (540)
Q Consensus       184 ~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~  261 (540)
                      |..|.....+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+...  
T Consensus        84 n~~g~~~~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~--  154 (389)
T 2jll_A           84 SRIGGHQKSMYLDIEY-------APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST--  154 (389)
T ss_dssp             CSSCEEEEEEEEEEEE-------EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC--
T ss_pred             eCCCCcceEEEEEEEe-------CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc--
Confidence            9999988889999885       6667666666677899999999999999999999999999887654  3333221  


Q ss_pred             CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc----
Q psy670          262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA----  337 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~----  337 (540)
                      .  ....|.|.++..+|.|.|+|.|.|..|.......+.+...+.    +|..+.    .....+..+.|.|....    
T Consensus       155 ~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~----~P~~~~----~~~~~~~~~~l~w~~p~~~~g  224 (389)
T 2jll_A          155 G--RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS----SPYGVK----IIELSQTTAKVSFNKPDSHGG  224 (389)
T ss_dssp             S--SCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC----CCEEEE----EEEECSSCEEEEEECCSCCTT
T ss_pred             C--CEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC----CCcceE----EeeccCCEEEEEEeCCCCCCC
Confidence            1  124799999999999999999999999877777776644321    221111    12234677889997422    


Q ss_pred             cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          338 KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       338 ~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      .|..  .+.|.+++....     . .....+.  ...+.|.++...+.|.|+|.|.|..|....+..+.+
T Consensus       225 ~pi~~y~v~~~~~~~~~~-----~-~~~~~~~--~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~  286 (389)
T 2jll_A          225 VPIHHYQVDVKEVASEIW-----K-IVRSHGV--QTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF  286 (389)
T ss_dssp             SCEEEEEEEEEETTCSCC-----E-EEECSTT--CSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred             cceEEEEEEEEECCCccc-----E-EeeccCC--cceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE
Confidence            2322  467877654211     1 1111111  117899999999999999999999987654444433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=217.76  Aligned_cols=246  Identities=13%  Similarity=0.159  Sum_probs=172.7

Q ss_pred             eeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCC
Q psy670           26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAP  105 (540)
Q Consensus        26 ~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~  105 (540)
                      +.|++++..     +..+....      ..++|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..++.....      
T Consensus        32 v~W~~~~~~-----~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~------   94 (292)
T 4dkd_C           32 VEWDGPPSP-----HWTLYSDG------SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV------   94 (292)
T ss_dssp             CCBCCCCCS-----SCEECCBT------TEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEE------
T ss_pred             eEEccCCCC-----ceEEeccC------ceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccc------
Confidence            899976642     22222111      2369999999999999999999998887777888888765421111      


Q ss_pred             CCCCCCccccCCCeEEEEEEEeecCC--CceEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEE
Q psy670          106 RFPKKPTIHQDGDLLVMECVLEASPM--PDIIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNA  182 (540)
Q Consensus       106 ~~~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  182 (540)
                        ......+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+....+......     .   .|.|.+++.+|+|.|+|.+
T Consensus        95 --~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~-----~---~L~i~~~~~~d~G~Y~C~a  163 (292)
T 4dkd_C           95 --LAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPW-----H---GFTIHRAKFIQSQDYQCSA  163 (292)
T ss_dssp             --SCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSS-----S---CCEETTCCGGGCSEEEEEE
T ss_pred             --cCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCC-----c---eEEECCCCHHHCeEEEEEE
Confidence              123456889999999999976 44  68999997 555554444333211     1   4999999999999999999


Q ss_pred             EcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEEeeccCceEEEEec
Q psy670          183 CNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKIIVNE  260 (540)
Q Consensus       183 ~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~  260 (540)
                      .+..+.. +..+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+.|. ..+.|++++..+.........  .
T Consensus       164 ~n~~~~~~s~~~~l~V~~~~~---~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~  238 (292)
T 4dkd_C          164 LMGGRKVMSISIRLKVQKVIP---GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH--N  238 (292)
T ss_dssp             CSTTSCEECCCEEEEEECCCC---SSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE--T
T ss_pred             EeCCCceeEEEEEEEEeCCCC---CCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec--c
Confidence            9887754 4467777774221   2666766666666779999999999988654 578999988766543332211  1


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE  304 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  304 (540)
                      ........|.|.+++.+|+|.|+|.|.|..|....++.|.|...
T Consensus       239 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  282 (292)
T 4dkd_C          239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES  282 (292)
T ss_dssp             TEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred             ceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence            11223358999999999999999999999999888888877653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=4.9e-25  Score=207.68  Aligned_cols=266  Identities=18%  Similarity=0.231  Sum_probs=193.0

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +...... ..+  ...|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~--~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-KGG--YHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-TTT--EEEEEESSCCGGGCSEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEEC-CCC--EEEEEEccCChhhCeEEEEE
Confidence            7788888888899999999999999999999999999999887543 3333222 122  24799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      +.|..|.....+.|.|...+..  ..|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.....  
T Consensus        81 a~n~~g~~~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--  156 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--  156 (305)
T ss_dssp             EEETTEEEEEEEEEEECEEEEE--CCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC--
T ss_pred             EEcCCCCccceEEEEEecCCcc--CCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc--
Confidence            9999888777778887653211  112222223456788999999999999999999999999998877666544322  


Q ss_pred             CCeeEEEEEEcC-CCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccc
Q psy670          366 GDKYHIRLEVKD-PRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFK  444 (540)
Q Consensus       366 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (540)
                      +.  ...|.|.+ +..+|+|.|+|.|.|..|....++.|.|..+|....                               
T Consensus       157 ~~--~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~-------------------------------  203 (305)
T 2nzi_A          157 RS--FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPR-------------------------------  203 (305)
T ss_dssp             SS--EEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCE-------------------------------
T ss_pred             CC--ceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCC-------------------------------
Confidence            11  23899999 999999999999999999999888888876321100                               


Q ss_pred             cceeeeeeeeceee-cCCcEEEe------cCCCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE-EEEecCCeEEEEE
Q psy670          445 KYSVLTLSVVPVIR-EVPKVVTI------SKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV-HIEQVKDVSMNFE  516 (540)
Q Consensus       445 ~~~~~~~~~~p~i~-~~~~~~~~------~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~g~y~c~  516 (540)
                               .+.+. .......+      ..|....+.|.+.+.+.+...|.+.+...  .....+ .+...+.|.|+|.
T Consensus       204 ---------~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~--~~~~~i~~l~~~~~y~~~~~  272 (305)
T 2nzi_A          204 ---------GVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ETRYTVINLFGKTSYQFRVI  272 (305)
T ss_dssp             ---------EEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEES--SSEEEECSCCSSCEEEEEEE
T ss_pred             ---------CceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcccc--CceEEecCCCCCCeEEEEEE
Confidence                     00111 01111111      23566778899999888899999987654  222222 4566789999999


Q ss_pred             Eeeeeee
Q psy670          517 LWLGIVE  523 (540)
Q Consensus       517 ~~~~~~~  523 (540)
                      +....-.
T Consensus       273 A~N~~G~  279 (305)
T 2nzi_A          273 AENKFGL  279 (305)
T ss_dssp             EEETTEE
T ss_pred             EEeCCcc
Confidence            9865433

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=209.57  Aligned_cols=244  Identities=14%  Similarity=0.115  Sum_probs=162.1

Q ss_pred             eeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc---eeeeEEEEEeecCCccccCCC
Q psy670           26 MNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE---GSSTVNLNFSEEDGKLKVPGG  102 (540)
Q Consensus        26 ~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~i~~~  102 (540)
                      ++|+|++..+..    +.....++   .+.++|.|.+++.+|+|.|+|.+.|..|.   ...++.|.|..+. .+     
T Consensus        28 v~W~~~~~~~~~----~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~-~~-----   94 (289)
T 3mjg_X           28 VVWERMSQEPPQ----EMAKAQDG---TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPT-VG-----   94 (289)
T ss_dssp             CEEEBTTBCCSE----EEEECTTS---CEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTT-CC-----
T ss_pred             EEEECCCCCccc----ceeccCCC---ceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCC-cC-----
Confidence            899999998731    22222222   13579999999999999999999998876   2334444443221 11     


Q ss_pred             CCCCCCCCC----ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          103 KAPRFPKKP----TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       103 ~~~~~~~~~----~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                         .++..+    ..+.+|+.+.|.|.+. .|.+.+.|++++.........  .    ...    .+.    ...|+|.|
T Consensus        95 ---~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~--~----~~~----~~~----~~~d~G~Y  156 (289)
T 3mjg_X           95 ---FLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPY--D----HQR----GFS----GIFEDRSY  156 (289)
T ss_dssp             ---BCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCE--E----TTT----EEE----ECCCSSEE
T ss_pred             ---cccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceee--c----CCc----Cee----eeccCcEE
Confidence               111111    4578999999999997 778899999865222111111  0    011    111    25699999


Q ss_pred             EEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670          179 RCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII  257 (540)
Q Consensus       179 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~  257 (540)
                      +|.+.+..+.. +..+.|.|...     .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++............
T Consensus       157 ~C~a~n~~~~~~s~~~~l~v~~~-----~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~  231 (289)
T 3mjg_X          157 ICKTTIGDREVDSDAYYVYRLQV-----SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTD  231 (289)
T ss_dssp             EEEEEETTEEEECCCEEEEECCC-----CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEE
T ss_pred             EEEEEeCCceeeeeeEEEEecCC-----CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccccc
Confidence            99999776654 33456666542     1444544444566788999999999999999999999877654332221111


Q ss_pred             Eec-CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670          258 VNE-QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       258 ~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      ... ........|.|.+++.+|+|.|+|.|.|..|....+..|.|...+
T Consensus       232 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE  280 (289)
T ss_dssp             ESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             ccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence            111 124455689999999999999999999999999999999998754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.93  E-value=6.6e-26  Score=214.64  Aligned_cols=249  Identities=10%  Similarity=0.167  Sum_probs=169.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+++|..+......        ......|.|.+++.+|+|.|+|.+
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~--------~~~~~~L~I~~v~~~D~G~Y~C~a   93 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG--------RIFQESFNMSPVTTAHAGNYTCRG   93 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH--------CCBSSCEEECSCCGGGCEEEEEEE
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC--------CcceEEEEECCCCcccCeEEEEEE
Confidence            666666665 457799999999999887 6789999999875432110        000126899999999999999999


Q ss_pred             EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670          287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN  361 (540)
Q Consensus       287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  361 (540)
                      .+..+     ..+..+.|.|....    .+|.+...+... +.+|+.++|.|.+. .+.+.+.|+++|..+........ 
T Consensus        94 ~~~~~~~~~~~~s~~~~l~V~~~~----~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~-  166 (316)
T 3vh8_G           94 SHPHSPTGWSAPSNPVVIMVTGNH----RKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ-  166 (316)
T ss_dssp             BCSSSSSSBCCCCCCEEEEEECSS----CCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE-
T ss_pred             EcCCCCcceecCCCcEEEEEecCC----CCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee-
Confidence            86432     23455667765532    245666555544 78999999999994 56678999999987643221110 


Q ss_pred             EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-----EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccc
Q psy670          362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-----NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRD  436 (540)
Q Consensus       362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (540)
                        .........|.|.+++.+|+|.|+|.|.|..|..     +..+.|.|..                             
T Consensus       167 --~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~-----------------------------  215 (316)
T 3vh8_G          167 --IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG-----------------------------  215 (316)
T ss_dssp             --EETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC-----------------------------
T ss_pred             --ecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC-----------------------------
Confidence              1112233489999999999999999999987741     4455566543                             


Q ss_pred             cccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCCceEEEecCeecCCC--------C--eEEE---
Q psy670          437 FSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKED--------N--KHVV---  503 (540)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~--------~--~~~~---  503 (540)
                                    ...+|.+...+.. .+.+|+.++|.|.+. .|.+.+.|+|+|..+...        .  ...+   
T Consensus       216 --------------~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~  279 (316)
T 3vh8_G          216 --------------PYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLG  279 (316)
T ss_dssp             --------------SSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC
T ss_pred             --------------CCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcC
Confidence                          1125555554432 568899999999996 577899999999876421        1  1222   


Q ss_pred             EEEecCCeEEEEEEeeee
Q psy670          504 HIEQVKDVSMNFELWLGI  521 (540)
Q Consensus       504 ~~~~~~~g~y~c~~~~~~  521 (540)
                      .+.  |.|.|+|.+....
T Consensus       280 ~v~--D~G~Y~C~a~n~~  295 (316)
T 3vh8_G          280 PAT--HGGTYRCFGSFRH  295 (316)
T ss_dssp             -------CEEEEEEEBTT
T ss_pred             CcC--CCEEEEEEeecCC
Confidence            233  9999999998743

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.92  E-value=6.2e-23  Score=182.07  Aligned_cols=191  Identities=25%  Similarity=0.479  Sum_probs=155.6

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEee-ccCceEEEEecCCCeEEEEEEEeCCCC-CCcEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVK-ESSKIKIIVNEQDDTYEIICEITDPIG-PDSGTYR  283 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~  283 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... .+  ...|.|.+++. +|+|.|+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~--~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP-GG--ISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEET-TT--EEEEEESSCCTTTTCSEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcC-CC--eEEEEEEecCCCCcCceEE
Confidence            37888888888889999999999999999999999999999887 33444433322 22  24799999999 9999999


Q ss_pred             EEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC-ceEEE
Q psy670          284 CNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWN  361 (540)
Q Consensus       284 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~  361 (540)
                      |.+.|..|. ....+.|.|...+......|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .+.. 
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-  160 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL-  160 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE-
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc-
Confidence            999999888 6777888887654433335778877877888899999999999999999999999999987643 3221 


Q ss_pred             EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE-EEEEEEE
Q psy670          362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN-LTLNIEM  407 (540)
Q Consensus       362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~  407 (540)
                        .++     .|.|.+++.+|+|.|+|.|.|..|..... +.|.|..
T Consensus       161 --~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          161 --KDG-----FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             --ETT-----EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             --cCC-----eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence              122     79999999999999999999999988654 7888887

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.92  E-value=1.1e-23  Score=184.24  Aligned_cols=188  Identities=23%  Similarity=0.449  Sum_probs=152.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ........  +  ...|.|.+++.+|+|.|+|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~--~~~L~i~~~~~~d~G~Y~C   80 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD--G--RAKLTIPAVTKANSGRYSL   80 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEET--T--EEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCC--C--EEEEEECCCCcccCEEEEE
Confidence            6677777777888899999999999999999999999998886653  33332221  1  2479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          285 NVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .+.+..+.......+.|....    .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+.....+...  .
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--~  154 (194)
T 2a38_A           81 KATNGSGQATSTAELLVKAET----APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS--Q  154 (194)
T ss_dssp             EEEETTEEEEEEEEEEEECCC----EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEE--E
T ss_pred             EEEcCCceEeEEEEEEEccCC----CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEE--E
Confidence            999988877777777776421    1566676777778899999999999999999999999999999877665443  2


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      ++.  ..+|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       155 ~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          155 EGD--LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             ETT--EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCC--EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            333  2379999999999999999999999999888888773

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.92  E-value=1.7e-23  Score=183.47  Aligned_cols=191  Identities=22%  Similarity=0.335  Sum_probs=150.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ++..... ..+  ...|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~--~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-KGG--YHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-TTT--EEEEEECSCCGGGCSEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc-CCC--EEEEEECcCCHHhCEEEEEE
Confidence            7778777888889999999999999999999999999999887543 3333222 222  24799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      +.+..+.....+.|.|...+..  ..+.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.....  
T Consensus        81 ~~n~~g~~~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--  156 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--  156 (197)
T ss_dssp             EEETTEEEEEEEEEEEEEEEEE--CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC--
T ss_pred             EEECCCceeEEEEEEEcCCCcC--CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc--
Confidence            9999888777778887663221  122222233456688899999999999999999999999999887666554322  


Q ss_pred             CCeeEEEEEEcC-CCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          366 GDKYHIRLEVKD-PRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       366 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.  ...|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus       157 ~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          157 RS--FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SS--EEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CC--ceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            11  23899999 99999999999999999999988888875

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.92  E-value=4.1e-23  Score=183.22  Aligned_cols=196  Identities=22%  Similarity=0.372  Sum_probs=150.7

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCC-CCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDP-IGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~  285 (540)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............   ...|.|.++ +.+|+|.|+|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS---GSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGT---EEEEEECSCCTTTTCEEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCC---ceEEEEeccCCCCCCeEEEEE
Confidence            67777778888889999999999999999999999999998876543333222111   247999999 59999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc-eEEEEEe
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR-ISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~  364 (540)
                      +.|..|.....+.|.|...+......|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..... .+.....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~  162 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR  162 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred             EEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence            999988877788888876543333357777777778888999999999999999999999999998876421 1222222


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM  407 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  407 (540)
                      .+.  ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       163 ~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          163 SES--IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             ETT--EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCC--eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEe
Confidence            221  3489999999999999999999999986 4456777765

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=1.3e-24  Score=208.15  Aligned_cols=280  Identities=11%  Similarity=0.174  Sum_probs=161.9

Q ss_pred             CceeecCCCCeEEEEEEeccc--CCCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAK--PRPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|+.+.|.|.+.+.  +.+.+.|+++  +..+.                 ...++.+....  ......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~   84 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT--SASTAYVELS   84 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET--TTTEEEEEEC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec--CCCEEEEEEC
Confidence            345677899999999999876  3678999986  33221                 01233332221  1123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy670          273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGK  350 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~  350 (540)
                      +++.+|+|.|+|.+.+..+.......|.|...+   ..+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+++|.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~  161 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  161 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSC---CBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTB
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCC---CCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCc
Confidence            999999999999999865444455667776321   124554433322335689999999999986 64 6999999987


Q ss_pred             EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeee
Q psy670          351 ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVK  429 (540)
Q Consensus       351 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      .+....... ....++. ...+.|.|..+..+| |.|+|.|.|..+.......+.+...-           ++...+.  
T Consensus       162 ~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~-----------~~~~~~~--  226 (344)
T 1za6_B          162 TSGVHTFPA-VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCD-----------KTHTCPP--  226 (344)
T ss_dssp             CTTEEECCC-EECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC---------------------
T ss_pred             cCceeECCC-eECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccc-----------cccccCC--
Confidence            642110000 0011111 123479999988878 99999999988765433333211000           0000000  


Q ss_pred             ecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCC---------
Q psy670          430 TRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKED---------  498 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~---------  498 (540)
                             +...+...  .......+|.+...+......+|+.++|.|.+.|.++  +.++|+|||..+...         
T Consensus       227 -------~~~~~~l~--~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~  297 (344)
T 1za6_B          227 -------CGGGSSGG--GSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS  297 (344)
T ss_dssp             ---------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECT
T ss_pred             -------CCCCcccc--ccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECC
Confidence                   00000000  0000112555443221112335777999999999644  489999999877532         


Q ss_pred             -CeEE----EEEEec---CCeEEEEEEeeeee
Q psy670          499 -NKHV----VHIEQV---KDVSMNFELWLGIV  522 (540)
Q Consensus       499 -~~~~----~~~~~~---~~g~y~c~~~~~~~  522 (540)
                       ..+.    +.+...   +.|.|+|.+....+
T Consensus       298 ~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l  329 (344)
T 1za6_B          298 DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  329 (344)
T ss_dssp             TSCEEEEEEEEECHHHHHTTCEEEEEEECTTS
T ss_pred             CCcEEEEEEEEEChHHccCCCeEEEEEEcCCC
Confidence             1111    223332   38999999986544

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.91  E-value=2e-22  Score=175.41  Aligned_cols=178  Identities=21%  Similarity=0.366  Sum_probs=141.8

Q ss_pred             CCeeccCCceeecCC-CCeEEEEEEecccCC--CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          207 APSFIEKPRIIPNES-GTLIQMKCKCSAKPR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      +|.+...+ ...+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......         ....|.|.+++.+|+|.|+
T Consensus         3 ~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            3 EPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEYH   72 (190)
T ss_dssp             CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEEE
T ss_pred             CCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEEE
Confidence            55665533 444555 999999999998776  7899999999886543321         2258999999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE--CCEEcc---CCCce
Q psy670          284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH--EGKELQ---QTDRI  358 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~--~~~~~~---~~~~~  358 (540)
                      |.+.+. +.....+.|.|..       +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++  +|..+.   ...++
T Consensus        73 C~~~n~-~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~  144 (190)
T 2wv3_A           73 CVYHFV-SAPKANATIEVKA-------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRF  144 (190)
T ss_dssp             EEEEET-TEEEEEEEEEEEC-------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCE
T ss_pred             EEEEeC-CcccccEEEEEec-------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeE
Confidence            999998 7777778888876       6777777777789999999999999999999999999  777664   23333


Q ss_pred             EEEEEecCCeeEEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          359 SWNVTLKGDKYHIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       359 ~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      ..  ..++.  ..+|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus       145 ~~--~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          145 FI--INKEN--YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EE--EECSS--EEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EE--ecCCC--eeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            22  22222  2389999999 799999999999999999999888876

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.91  E-value=8.1e-23  Score=179.05  Aligned_cols=190  Identities=23%  Similarity=0.403  Sum_probs=151.1

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............    ....|.|.+++.+|+|.|+|.
T Consensus         6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG----RTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS----SEEEEEEECCSGGGCEEEEEE
T ss_pred             CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC----CEEEEEEecCCccCCEEEEEE
Confidence            3677777778888899999999999999999999999999998777666554332    134799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      +.+..+.......+.|...+......    ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..........  .
T Consensus        82 ~~n~~~~~~~~~~l~v~~~p~~~~~~----~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~--~  155 (197)
T 3lcy_A           82 ATNEVGEVETSSKLLLQATPQFHPGY----PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN--T  155 (197)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECTTS----CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE--C
T ss_pred             EECCCCceeEEEEEEEEcCCCCCCCc----cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE--c
Confidence            99988888777888877633211000    11244567889999999999999999999999999998776655432  2


Q ss_pred             CCeeEEEEEEcCCCC-CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          366 GDKYHIRLEVKDPRK-EDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       366 ~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +.  ...|.|.++.. +|+|.|+|.|.|..|....++.|.|..
T Consensus       156 ~~--~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          156 EH--YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             SS--EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             CC--EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            21  23899999985 899999999999999999998888864

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=9.4e-23  Score=179.25  Aligned_cols=187  Identities=18%  Similarity=0.262  Sum_probs=138.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.|... ....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+..+.++.+.....  .....|.|.+++.+|+|.|+|.
T Consensus         3 ~p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~--~g~~~L~I~~v~~~D~G~Y~C~   79 (207)
T 3rbs_A            3 DPFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--TGIIEMFMEKLQDEDEGTYTFQ   79 (207)
T ss_dssp             ---CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT--TCEEEEEESCCCGGGCEEEEEE
T ss_pred             CCeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC--CCEEEEEECCCChhhCEEEEEE
Confidence            4444443 3567788999999999965 7999999999999998877776655332  2334799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccC--------C------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCE
Q psy670          286 VKNEFGESNANLNLNIEAEAE--------P------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGK  350 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~--------~------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~  350 (540)
                      |.|  |.......+.+.....        .      ...+|.+...+ ...+.+|+.+.|.|.+.|. |.|.|.|+++|.
T Consensus        80 a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~  156 (207)
T 3rbs_A           80 LQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDER  156 (207)
T ss_dssp             EEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTE
T ss_pred             EEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCE
Confidence            999  4444443332211000        0      00156665544 4678899999999999998 999999999999


Q ss_pred             EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          351 ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      .+..+.++.      ......+|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       157 ~l~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          157 EISVDEKHD------FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EECCCCCCC------CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ECCCCCceE------cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            997655421      1112337999999999999999999999999998888764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.90  E-value=3e-22  Score=175.15  Aligned_cols=181  Identities=20%  Similarity=0.407  Sum_probs=144.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCc--eEEEEecCC-CeE--EEEEEEeCCCCCCcE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSK--IKIIVNEQD-DTY--EIICEITDPIGPDSG  280 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~-~~~--~~~l~i~~~~~~d~g  280 (540)
                      +|.|...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  ..+...... ..+  ...|.|.+++.+|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            56677788888999999999999999 899999999999999876633  222222211 222  468999999999999


Q ss_pred             EEEEEEEcCCCCee-eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCce
Q psy670          281 TYRCNVKNEFGESN-ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRI  358 (540)
Q Consensus       281 ~y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~  358 (540)
                      .|+|.+.+..+... ..+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECC-------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS
T ss_pred             EEEEEEEeCCCceecccEEEEEec-------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc
Confidence            99999999876543 336677755       6777777777888999999999999999999 99999999988765432


Q ss_pred             EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEE
Q psy670          359 SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNI  405 (540)
Q Consensus       359 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V  405 (540)
                            .   ....|.|.+++  |+|.|+|.|.|..|... .++.|.|
T Consensus       155 ------~---~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 ------G---PQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ------S---CCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ------C---CCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence                  1   11279999887  88999999999999885 7888888

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.90  E-value=4e-22  Score=176.80  Aligned_cols=183  Identities=22%  Similarity=0.412  Sum_probs=145.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeec-CCCceEEEEeecCcceEEEEEEEcCCCC-CCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTK-DDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~~~  188 (540)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++......    .....|.|.+++. +|+|.|+|.+.|..+.
T Consensus        15 ~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~   90 (212)
T 2yd1_A           15 NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP----GGISILRIEPVRAGRDDAPYECVAENGVGD   90 (212)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEET----TTEEEEEESSCCTTTTCSEEEEEEECSSSC
T ss_pred             ceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcC----CCeEEEEEEecCCCCcCceEEEEEEeCCCC
Confidence            3568899999999999999999999999999886 44455444321    1124899999999 9999999999999888


Q ss_pred             -eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670          189 -SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       189 -~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                       ....+.|.|...+......|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........       .
T Consensus        91 ~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-------~  163 (212)
T 2yd1_A           91 AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------G  163 (212)
T ss_dssp             EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET-------T
T ss_pred             eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC-------C
Confidence             67888888886544333346777777777788899999999999999999999999998876433222111       1


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCCCeeee-EEEEEeec
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNIEAE  304 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~l~v~~~  304 (540)
                      .|.|.+++.+|+|.|+|.|.|..|..... +.|.|...
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            79999999999999999999999987654 77887763

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.90  E-value=1.5e-22  Score=176.90  Aligned_cols=178  Identities=21%  Similarity=0.416  Sum_probs=143.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+....  +......     .....|.|.+++.+|+|.|+|.+.+..+.
T Consensus        14 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   88 (194)
T 2a38_A           14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS-----DGRAKLTIPAVTKANSGRYSLKATNGSGQ   88 (194)
T ss_dssp             CEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE-----TTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC-----CCEEEEEECCCCcccCEEEEEEEEcCCce
Confidence            4578899999999999999999999999998886553  3333221     12348999999999999999999999888


Q ss_pred             eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEE
Q psy670          189 SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       189 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~  268 (540)
                      ....+.|.|....    .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.............    ...
T Consensus        89 ~~~~~~l~v~~~~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~  160 (194)
T 2a38_A           89 ATSTAELLVKAET----APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD----LYS  160 (194)
T ss_dssp             EEEEEEEEEECCC----EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETT----EEE
T ss_pred             EeEEEEEEEccCC----CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCC----EEE
Confidence            8777888877422    25666666777788899999999999999999999999999988766655543321    236


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      |.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            899999999999999999999998877777766

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.90  E-value=5.2e-22  Score=171.51  Aligned_cols=178  Identities=19%  Similarity=0.403  Sum_probs=141.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............  ......|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~   79 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE--QHWIGFLSLKSVERSDAGRYWCQV   79 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEET--TEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecC--CCceEEEEEeecCcccCeEEEEEE
Confidence            455666777888899999999999999999999999999988776554443332  334568999999999999999999


Q ss_pred             EcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .+..+. ....+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.....       
T Consensus        80 ~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------  145 (182)
T 1rhf_A           80 EDGGETEISQPVWLTVEG-------VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------  145 (182)
T ss_dssp             SSCTTCEECCCEEEEEEC-------SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------
T ss_pred             EcCCCcEEEEEEEEEEec-------CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------
Confidence            998664 34567777765       6777777777889999999999999999999 9999999998865321       


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE-EEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLNIE  406 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~  406 (540)
                      .    ...|.|.++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       146 ~----~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          146 S----PSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             S----SEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             C----ceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            1    127999887  589999999999999874 47777763

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=2.6e-22  Score=178.02  Aligned_cols=186  Identities=18%  Similarity=0.317  Sum_probs=142.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCC-CCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~  389 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......... .++.  ...|.|.++ +.+|+|.|+|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~--~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF-DDGS--GSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEE-GGGT--EEEEEECSCCTTTTCEEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEE-cCCC--ceEEEEeccCCCCCCeEEEEE
Confidence            6778888888889999999999999999999999999999987654332222 1112  237999999 59999999999


Q ss_pred             EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670          390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK  469 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g  469 (540)
                      |.|..|....++.|.|...+.                             .          ....|.+...+....+.+|
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~-----------------------------~----------~~~~p~~~~~~~~~~~~~g  123 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLREDQ-----------------------------I----------PRGFPTIDMGPQLKVVERT  123 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGGG-----------------------------C----------CTTCCEEEECCCCEEEETT
T ss_pred             EEcCCCcEEEEEEEEEeccCc-----------------------------c----------CCCcceeecCCcceeEecC
Confidence            999999888888888875100                             0          0013667766777788899


Q ss_pred             CeEEEEEEEeeecCCceEEEecCeecCCCC---e---------EEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEE
Q psy670          470 KTVVIECKVMSMYEPSVTWMKEKNTVKEDN---K---------HVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYY  534 (540)
Q Consensus       470 ~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~---~---------~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~  534 (540)
                      +.++|.|.+.|.|.+.++|+++|..+....   +         ..+   .+...|.|.|+|.+.+...+.......+.++
T Consensus       124 ~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             SCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            999999999999999999999999887541   1         222   2344689999999999888888888888888


Q ss_pred             eccc
Q psy670          535 IAPF  538 (540)
Q Consensus       535 ~~~~  538 (540)
                      .+|-
T Consensus       204 ~~~~  207 (212)
T 2yd6_A          204 GTKH  207 (212)
T ss_dssp             C---
T ss_pred             eccc
Confidence            8874

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.90  E-value=2.5e-22  Score=174.98  Aligned_cols=184  Identities=20%  Similarity=0.361  Sum_probs=140.3

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe-CCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK-ADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~-~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      +.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+... .++.......   ....|.|.+++.+|+|.|+|
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD---DSSTLTIYNANIDDAGIYKC   79 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEET---TEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCC---CceEEEEccCCcccCEEEEE
Confidence            3445556677788999999999999876 78999999 88877633 3333322211   12479999999999999999


Q ss_pred             EEEcCCC-CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE
Q psy670          285 NVKNEFG-ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT  363 (540)
Q Consensus       285 ~~~~~~~-~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  363 (540)
                      .+.+..+ .....+.+.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...........
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~  152 (191)
T 1epf_A           80 VVTAEDGTQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL  152 (191)
T ss_dssp             EEEETTTEEEEEEEEEEEEC-------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC
T ss_pred             EEEcCCCcceEEEEEEEeec-------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe
Confidence            9999874 445556666654       67777777778889999999999999999999999999999865443233222


Q ss_pred             ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .++     .|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus       153 ~~~-----~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          153 SNN-----YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             TTS-----CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             cCC-----eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            222     69999999999999999999998766555555543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.90  E-value=2.6e-22  Score=175.07  Aligned_cols=181  Identities=23%  Similarity=0.438  Sum_probs=146.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC-ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS-KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +..+. . ..    ..|.|.+++.+|+|.|+|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~-~~----~~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR-E-NG----QLLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE-G-GG----TEEEESSCCGGGCEEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc-C-Cc----cEEEEcCCCcccCeEEEEE
Confidence            6677777778888999999999999999999999999999886532 32222 1 11    1699999999999999999


Q ss_pred             EEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          286 VKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      +.+..+. ......+.|..       +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+...  . 
T Consensus        81 ~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~--~-  150 (192)
T 2iep_A           81 ANNGVGGAVESCGALQVKM-------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAV--L-  150 (192)
T ss_dssp             EECSSSCCEEEEEEEEEEE-------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEE--C-
T ss_pred             EEcCCCceeEeEEEEEEEe-------CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEE--e-
Confidence            9998776 45556677766       56666667777888999999999999999999999999999877665432  1 


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEM  407 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  407 (540)
                      ..+    .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus       151 ~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          151 ESG----SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             TTS----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCC----cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            222    69999999999999999999999987 4568888876

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.89  E-value=4.5e-22  Score=174.35  Aligned_cols=182  Identities=21%  Similarity=0.322  Sum_probs=142.0

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+......    ....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        13 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~   88 (197)
T 2j8h_A           13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF----KGGYHQLIIASVTDDDATVYQVRATNQGGSV   88 (197)
T ss_dssp             CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE----TTTEEEEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred             ccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc----CCCEEEEEECcCCHHhCEEEEEEEEECCCce
Confidence            456889999999999999999999999999988654 34433322    1123489999999999999999999998888


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      ...+.|.|...+..  ..|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....+.+.....    ...|
T Consensus        89 ~~~~~l~V~~~p~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~L  162 (197)
T 2j8h_A           89 SGTASLEVEVPAKI--HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSL  162 (197)
T ss_dssp             EEEEEEEEEEEEEE--CCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSS----EEEE
T ss_pred             eEEEEEEEcCCCcC--CCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCC----ceEE
Confidence            88888888753221  12222333455667889999999999999999999999999988666655533221    2479


Q ss_pred             EEeC-CCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          270 EITD-PIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       270 ~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      .|.+ +..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       163 ~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             ECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9999 99999999999999999988877777764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=174.17  Aligned_cols=183  Identities=22%  Similarity=0.388  Sum_probs=136.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.............     ..|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~~   76 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-----NNLQILNINKSDEGIYRCEG   76 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTT-----SCEEETTCCGGGCEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecC-----CCEEEeeCCHhHCcEEEEEE
Confidence            4566667777888899999999999999999999999998776432222222211     15999999999999999999


Q ss_pred             EcCCCCee--eeEEEEEeeccCCCCCCCeEEeCCc--eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670          287 KNEFGESN--ANLNLNIEAEAEPEGDPPTFIEKPK--IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV  362 (540)
Q Consensus       287 ~~~~~~~~--~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  362 (540)
                      .+..+...  ..+.+.+..       +|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|+++|..+........  
T Consensus        77 ~~~~~~~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--  147 (189)
T 2v5t_A           77 RVEARGEIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--  147 (189)
T ss_dssp             EETTTTEEEEEEEEEEEEE-------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEE--
T ss_pred             EEcCCCceEEEEEEEEecC-------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEE--
Confidence            98875543  334455544       444443332  34567899999999999999999999999999887665433  


Q ss_pred             EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ...+.    .|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus       148 ~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          148 KGSNT----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             ETTTT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ecCCC----EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            22222    799999999999999999999999999888888753

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=1.1e-21  Score=170.82  Aligned_cols=168  Identities=24%  Similarity=0.390  Sum_probs=135.7

Q ss_pred             cccC-CCeEEEEEEEeecCC--CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          113 IHQD-GDLLVMECVLEASPM--PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       113 ~v~~-G~~v~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      .+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......          ....|.|.+++.+|+|.|+|.+.+. +..
T Consensus        13 ~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~   81 (190)
T 2wv3_A           13 IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----------SNMEYRINKPRAEDSGEYHCVYHFV-SAP   81 (190)
T ss_dssp             ECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----------SEEEEEESSCCGGGCEEEEEEEEET-TEE
T ss_pred             EEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe----------ccEEEEEecCCcccCEEEEEEEEeC-Ccc
Confidence            4445 999999999988887  7899999999886553321          1238999999999999999999998 888


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--CCEEee---ccCceEEEEecCCCe
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLVK---ESSKIKIIVNEQDDT  264 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~l~---~~~~~~~~~~~~~~~  264 (540)
                      ...+.|.|..       +|.+...+....+.+|+.+.|.|.+.++|.+.+.|++  ++..+.   ...++.+...  .. 
T Consensus        82 ~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~--~~-  151 (190)
T 2wv3_A           82 KANATIEVKA-------APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK--EN-  151 (190)
T ss_dssp             EEEEEEEEEC-------CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC--SS-
T ss_pred             cccEEEEEec-------CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC--CC-
Confidence            8888888885       6777766777778899999999999999999999999  777764   2333333221  11 


Q ss_pred             EEEEEEEeCCC-CCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          265 YEIICEITDPI-GPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       265 ~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                       ...|.|.+++ .+|.|.|+|.|.|..|.....+.|.|.
T Consensus       152 -~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          152 -YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             -EEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             -eeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence             2479999999 799999999999999988888877774

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.89  E-value=4.5e-23  Score=180.18  Aligned_cols=170  Identities=18%  Similarity=0.164  Sum_probs=121.3

Q ss_pred             eecCCCCeEEEEEE---ecccCCCeEEEEeCCEEeecc-----------------CceEEEEecCCCeEEEEEEEeCCCC
Q psy670          217 IPNESGTLIQMKCK---CSAKPRPEVKWFKADKLVKES-----------------SKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       217 ~~~~~g~~~~l~C~---~~~~p~~~v~W~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      +++..|+.++|.|.   +.+.|.+.|.|+|+|..+...                 ..+.....  ..  ...|.|.+++.
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~L~I~~v~~   78 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS--AN--TFFLVVTAANI   78 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE--TT--EEEEEESSCCG
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc--CC--EEEEEEccCCH
Confidence            45668999999996   456899999999976432110                 01111111  11  24799999999


Q ss_pred             CCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC
Q psy670          277 PDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD  356 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~  356 (540)
                      +|+|.|+|.+.|..|.....+.|.|..       ||.+...+....+.+|+.+.|.|.+.|.|.|.|.|++++..+....
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~  151 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT  151 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--------
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEecC-------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc
Confidence            999999999999988888888888875       6666666667778899999999999999999999998776553221


Q ss_pred             --ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          357 --RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       357 --~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                        ..++....++.  ...|.|.++..+|+|.|+|.|.|..|....
T Consensus       152 ~~~~r~~~~~~g~--l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          152 AANGGVMKEKDGS--LSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ----CCEECTTSC--EEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             cccceEEEeCCCC--EEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence              11222223332  235667788999999999999999998764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=1.9e-21  Score=170.07  Aligned_cols=174  Identities=15%  Similarity=0.331  Sum_probs=136.6

Q ss_pred             CCccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCC--ceEEEEeecCcceE--EEEEEEcCCCCCCCeEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTY--LLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      ....+.+|+++.|.|.+. +.|.+.+.|+++|..+....  +..+.....+...+  ...|.|.+++.+|+|.|+|.+.+
T Consensus        10 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   89 (195)
T 2c5d_C           10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL   89 (195)
T ss_dssp             CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEE
T ss_pred             hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEe
Confidence            345788999999999998 89999999999999987653  23332222222222  45899999999999999999999


Q ss_pred             CCceeE-EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCC
Q psy670          185 SIGESN-ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQD  262 (540)
Q Consensus       185 ~~~~~~-~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~  262 (540)
                      ..+... ..+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+......        
T Consensus        90 ~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--------  154 (195)
T 2c5d_C           90 GHQTFVSQPGYVGLEG-------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------  154 (195)
T ss_dssp             TTEEEECCCEEEEECC-------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--------
T ss_pred             CCCceecccEEEEEec-------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--------
Confidence            877653 347788764       6777777777888899999999999999999 99999999887655432        


Q ss_pred             CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee-eeEEEEE
Q psy670          263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNI  301 (540)
Q Consensus       263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v  301 (540)
                       .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       155 -~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          155 -GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             -SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence             112378999887  78999999999998774 6777777

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.89  E-value=9.7e-22  Score=172.77  Aligned_cols=178  Identities=17%  Similarity=0.219  Sum_probs=132.5

Q ss_pred             ccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|+.+.|.|.+. +.|.+.+.|+++|..+..+.+..+...   ......+|.|.+++.+|+|.|+|.+.|  |...
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~   86 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHID---RNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT   86 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEEC---TTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred             eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEe---CCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence            4578999999999995 479999999999999987777666542   222445899999999999999999999  3333


Q ss_pred             EEEEEEEecCcC---------C-----CCCCCeeccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceE
Q psy670          191 ANIALNFQGGEN---------G-----AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIK  255 (540)
Q Consensus       191 ~~~~l~v~~~~~---------~-----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~  255 (540)
                      ....+.+.....         .     ...+|.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++++..+....++ 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~-  164 (207)
T 3rbs_A           87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-  164 (207)
T ss_dssp             EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC-
T ss_pred             EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce-
Confidence            333332211000         0     00145554433 3667789999999999998 99999999999998765432 


Q ss_pred             EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          256 IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       256 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                           .......+|.|.+++.+|+|.|+|.|.|..|....++.|.+
T Consensus       165 -----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          165 -----DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             -----CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             -----EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence                 11223357999999999999999999999998887776654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.89  E-value=1.9e-21  Score=170.27  Aligned_cols=177  Identities=25%  Similarity=0.459  Sum_probs=142.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....+......     ....+|.|.+++.+|+|.|+|.+.+..+...
T Consensus        16 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~   90 (197)
T 3lcy_A           16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD-----GRTHTLTVMTEEQEDEGVYTCIATNEVGEVE   90 (197)
T ss_dssp             CEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEES-----SSEEEEEEECCSGGGCEEEEEEEECSSCEEE
T ss_pred             ceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeC-----CCEEEEEEecCCccCCEEEEEEEECCCCcee
Confidence            45688999999999999999999999999999877766655432     1234899999999999999999999988888


Q ss_pred             EEEEEEEecCcCCCCCCCeecc---CCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIE---KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                      ..+.|.|..       +|.+..   .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............    ...
T Consensus        91 ~~~~l~v~~-------~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~----~~~  159 (197)
T 3lcy_A           91 TSSKLLLQA-------TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE----HYT  159 (197)
T ss_dssp             EEEEEEEEE-------EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECS----SEE
T ss_pred             EEEEEEEEc-------CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcC----CEE
Confidence            888888875       333221   234456678999999999999999999999999998877665554322    124


Q ss_pred             EEEEeCCCC-CCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          268 ICEITDPIG-PDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       268 ~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      .|.|.++.. +|+|.|+|.|.|..|.....+.|.|..
T Consensus       160 ~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          160 HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            799999985 899999999999999888888777753

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.89  E-value=1.2e-22  Score=177.50  Aligned_cols=171  Identities=13%  Similarity=0.209  Sum_probs=122.8

Q ss_pred             CccccCCCeEEEEEE---EeecCCCceEEEeCCEeecCC-----------------CceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECV---LEASPMPDIIWYQGTKVIEDT-----------------GRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~---~~~~p~~~v~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      .+.+..|++++|.|.   +.+.|.+.+.|+|+|......                 .++.+..     ......|.|.++
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v   76 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-----SANTFFLVVTAA   76 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEE-----ETTEEEEEESSC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEE-----cCCEEEEEEccC
Confidence            356779999999995   457789999999976432110                 1111111     112348999999


Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec
Q psy670          171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE  250 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~  250 (540)
                      +.+|+|.|+|.+.|..|.....+.|.|..       +|.+...+....+.+|+.+.|.|.+.|.|.|.|.|++++..+..
T Consensus        77 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~  149 (203)
T 4fa8_A           77 NISHDGNYLCRMKLGETEVTKQEHLSVVK-------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA  149 (203)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEE-------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------
T ss_pred             CHHHCeEEEEEEEcCCCcEEEEEEEEecC-------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecC
Confidence            99999999999999999988889998874       66666677778889999999999999999999999987765532


Q ss_pred             cC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          251 SS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       251 ~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ..  ...+..... +. ...+.+.+++.+|+|.|+|.|.|..|....
T Consensus       150 ~~~~~~r~~~~~~-g~-l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          150 PTAANGGVMKEKD-GS-LSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ------CCEECTT-SC-EEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             cccccceEEEeCC-CC-EEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            21  111122212 21 235667889999999999999999997653

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=7e-21  Score=168.80  Aligned_cols=180  Identities=21%  Similarity=0.325  Sum_probs=140.3

Q ss_pred             CCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670          221 SGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL  299 (540)
Q Consensus       221 ~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  299 (540)
                      .++.+.|.|.+.+. |.+.+.|++++..+....+..+.....    ...|.|.+++.+|+|.|+|.+.+..+.....+.+
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l   91 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL   91 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC----EEEEEECCCCcccCEEEEEEEecCCcceEEEEEE
Confidence            57888999999884 588999999999998776665544332    2469999999999999999999987776665555


Q ss_pred             EEeecc--------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          300 NIEAEA--------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       300 ~v~~~~--------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      .+....              .....++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++......+
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~  171 (212)
T 2r15_A           92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG  171 (212)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETT
T ss_pred             EEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCC
Confidence            443200              000013344445666788999999999999999999999999999998877665543322


Q ss_pred             CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +   ...|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       172 ~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          172 R---TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             T---EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             C---EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            2   24899999999999999999999999999998888875

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=2.7e-22  Score=177.98  Aligned_cols=189  Identities=25%  Similarity=0.486  Sum_probs=143.1

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc---eEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK---IKIIVNEQDDTYEIICEITDPIGPDSGTY  282 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  282 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....   ........+......+.|.+++.+|+|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            377777788888899999999999999999999999999988764321   11112222333333456677899999999


Q ss_pred             EEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEE
Q psy670          283 RCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISW  360 (540)
Q Consensus       283 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~  360 (540)
                      +|.+.+..|.. ...+.+.|...      ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~  161 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAIL------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT  161 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEE------CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEE
T ss_pred             EEEEECCCCceeecceEEEEEec------cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEE
Confidence            99999987754 44566777654      2333344556678899999999998 8899999999999999876443221


Q ss_pred             EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE-EEEEEEEE
Q psy670          361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA-NLTLNIEM  407 (540)
Q Consensus       361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~  407 (540)
                       .  .++    .|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus       162 -~--~~~----~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          162 -I--RGG----KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             -E--ETT----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -c--cCC----eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence             1  122    7999999999999999999999998654 47888887

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=172.86  Aligned_cols=176  Identities=19%  Similarity=0.287  Sum_probs=132.1

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.|.++     .+.+.|+|+|.++..+.++++......      .+|.|.+++.+|+|.|+|.+.|..+....++.
T Consensus        22 l~C~~~~~~p-----~~~i~W~~~g~~i~~~~~~~~~~~~~~------~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~   90 (212)
T 2r15_A           22 LYSFVTYYVE-----DLKVNWSHNGSAIRYSDRVKTGVTGEQ------IWLQINEPTPNDKGKYVMELFDGKTGHQKTVD   90 (212)
T ss_dssp             EEEEBSSCCS-----SCEEEEEETTEECCCCSSEEEEEETTE------EEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEeccCC-----CceEEEEECCEEccCCCeEEEEEeCCE------EEEEECCCCcccCEEEEEEEecCCcceEEEEE
Confidence            4577777542     289999999999998888887655443      68999999999999999999998887776666


Q ss_pred             EEEeecCCc---------c-ccCCCCCCCC--CCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee
Q psy670           88 LNFSEEDGK---------L-KVPGGKAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS  155 (540)
Q Consensus        88 l~v~~~~~~---------~-~i~~~~~~~~--~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  155 (540)
                      |.|......         . ......++.+  ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+....
T Consensus        91 l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~  170 (212)
T 2r15_A           91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA  170 (212)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET
T ss_pred             EEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC
Confidence            654320000         0 0000000000  122356889999999999999999999999999999877776655431


Q ss_pred             cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670          156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ  198 (540)
Q Consensus       156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  198 (540)
                          .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus       171 ----~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          171 ----GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             ----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence                123489999999999999999999999999888888886

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.88  E-value=6e-22  Score=176.42  Aligned_cols=191  Identities=25%  Similarity=0.458  Sum_probs=142.6

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............+.....+.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            47888888888889999999999999999999999999999887643211111122333333457889999999999999


Q ss_pred             EEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceE----
Q psy670          286 VKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRIS----  359 (540)
Q Consensus       286 ~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~----  359 (540)
                      +.+..|.. .....+.|...      ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.......    
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  161 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS  161 (217)
T ss_dssp             EEETTEEEECCCEEEEECEE------CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred             EecCCCccccccceEEEEEe------CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC
Confidence            99987754 33566666553      2333344556778899999999999 889999999999999887432211    


Q ss_pred             --EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          360 --WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       360 --~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                        .... .+.    .|.|.+++.+|+|.|+|.|.|..|....+..+.+..
T Consensus       162 ~~~~~~-~~~----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          162 SRVRIV-DGG----NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             CSEEEE-TTT----EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CcEEec-CCC----cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence              1111 222    799999999999999999999999887766655544

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.88  E-value=3.2e-21  Score=171.72  Aligned_cols=175  Identities=19%  Similarity=0.344  Sum_probs=142.7

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .+.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....             ..|.|.+++.+|+|.|+|.+
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~~   84 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-------------SELIFNAVHVKDAGFYVCRV   84 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS-------------SEEEETTCCGGGCEEEEEEE
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC-------------CEEEEccCChhhCeEeEEEE
Confidence            56677778888889999999999999999999999999988765432             27999999999999999999


Q ss_pred             EcCCCCe-eeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc
Q psy670          287 KNEFGES-NANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR  357 (540)
Q Consensus       287 ~~~~~~~-~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~  357 (540)
                      .+..+.. +..+.+.|...+..        ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus        85 ~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~  164 (218)
T 3k0w_A           85 NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK  164 (218)
T ss_dssp             ECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS
T ss_pred             EcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC
Confidence            9987754 45567777653210        11236777777778899999999999999999999999999998876432


Q ss_pred             eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670          358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM  407 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  407 (540)
                      .             .|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       165 ~-------------~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          165 K-------------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             S-------------EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             C-------------EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence            1             7999999999999999999998876 56777788776

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=3.3e-21  Score=167.90  Aligned_cols=175  Identities=19%  Similarity=0.292  Sum_probs=135.9

Q ss_pred             CccccCCCeEEEEEEEeecC-CCceEEEe-CCEeec-CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-
Q psy670          111 PTIHQDGDLLVMECVLEASP-MPDIIWYQ-GTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-  186 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-  186 (540)
                      ...+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+. ...++......    .....|.|.+++.+|+|.|+|.+.+.. 
T Consensus        11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (191)
T 1epf_A           11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (191)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEEEEEEEcCCC
Confidence            45688999999999998876 78999999 888776 34444443221    123489999999999999999999987 


Q ss_pred             ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      +.....+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+......    
T Consensus        87 ~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----  155 (191)
T 1epf_A           87 TQSEATVNVKIFQ-------KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN----  155 (191)
T ss_dssp             EEEEEEEEEEEEC-------CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS----
T ss_pred             cceEEEEEEEeec-------CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCC----
Confidence            4567777888774       67777777778888999999999999999999999999998865433222222221    


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                       .|.|.+++.+|+|.|+|.|.|..+.......+.|
T Consensus       156 -~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          156 -YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             -CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             -eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence             6999999999999999999998766555555544

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=3.3e-21  Score=174.66  Aligned_cols=189  Identities=19%  Similarity=0.330  Sum_probs=140.3

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+............. ..   ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~C~~~~~~~~~   98 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-QQ---WSLVMESVVPSDRGNYTCVVENKFGSI   98 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeec-cc---eEEEEEeCCcccCEEEEEEEeecCCce
Confidence            34678899999999999999999999999999886543321111111 11   179999999999999999999998888


Q ss_pred             EEEEEEEEecCcCCCCCCCe-eccCCceeecCCCCeEEEEEEecccCCCeEEEEe----CCEEeeccCceEEEE----ec
Q psy670          190 NANIALNFQGGENGAGFAPS-FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----ADKLVKESSKIKIIV----NE  260 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~----~~  260 (540)
                      ...+.+.|......   .|. +...+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+..........    ..
T Consensus        99 ~~~~~l~V~~~~~~---~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  175 (241)
T 3grw_A           99 RQTYTLDVLERSPH---RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS  175 (241)
T ss_dssp             EEEEEEEEECCCCC---CCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred             EEEEEEEEeccCCC---CceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence            88888888753221   233 3334556778899999999999999999999999    777765443322111    11


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             SBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             eecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence            223345689999999999999999999999998888888887643

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.87  E-value=3.9e-21  Score=167.56  Aligned_cols=175  Identities=21%  Similarity=0.346  Sum_probs=137.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.  ...++.    .|.|.+++.+|+|.|+|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~~~----~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS--IRENGQ----LLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEE--EEGGGT----EEEESSCCGGGCEEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEE--EcCCcc----EEEEcCCCcccCeEEEEE
Confidence            456666667778899999999999999999999999999988653 3322  223333    799999999999999999


Q ss_pred             EEcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecC
Q psy670          390 IKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK  468 (540)
Q Consensus       390 a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~  468 (540)
                      +.|..|. ......|.|..                                              +|.+...+....+.+
T Consensus        81 ~~~~~~~~~~~~~~l~v~~----------------------------------------------~p~~~~~~~~~~~~~  114 (192)
T 2iep_A           81 ANNGVGGAVESCGALQVKM----------------------------------------------KPKITRPPINVKIIE  114 (192)
T ss_dssp             EECSSSCCEEEEEEEEEEE----------------------------------------------EEEEEECCCCEEEET
T ss_pred             EEcCCCceeEeEEEEEEEe----------------------------------------------CCccccCCcceEEeC
Confidence            9998876 45667787777                                              677777777788999


Q ss_pred             CCeEEEEEEEeeecCCceEEEecCeecCCCCeEEE---------EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEecc
Q psy670          469 KKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVV---------HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAP  537 (540)
Q Consensus       469 g~~~~l~C~v~g~p~~~v~W~~~~~~l~~~~~~~~---------~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~  537 (540)
                      |+.++|.|.+.|.|.+.++|++++..+..+.++..         .+...|.|.|+|.+.............+.+...|
T Consensus       115 g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             TSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999999999999999999998876544322         3455789999999998766665556666665544

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.87  E-value=4.6e-21  Score=173.71  Aligned_cols=188  Identities=21%  Similarity=0.439  Sum_probs=141.9

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceE-EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIK-IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... .......    ..|.|.+++.+|+|.|+|.+.+..+.
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~~~~~~   97 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ----WSLVMESVVPSDRGNYTCVVENKFGS   97 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccc----eEEEEEeCCcccCEEEEEEEeecCCc
Confidence            446778899999999999999999999999999886544321 1111111    26999999999999999999998887


Q ss_pred             eeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEE----E
Q psy670          293 SNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNV----T  363 (540)
Q Consensus       293 ~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~----~  363 (540)
                      ......+.|.....   .++.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++    +|..+..........    .
T Consensus        98 ~~~~~~l~V~~~~~---~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~  174 (241)
T 3grw_A           98 IRQTYTLDVLERSP---HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI  174 (241)
T ss_dssp             EEEEEEEEEECCCC---CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEE
T ss_pred             eEEEEEEEEeccCC---CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEee
Confidence            77777777765322   133333 34566778899999999999999999999999    887776554322211    1


Q ss_pred             ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEEE
Q psy670          364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV  408 (540)
Q Consensus       364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  408 (540)
                      .........|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       175 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  219 (241)
T 3grw_A          175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP  219 (241)
T ss_dssp             CSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---
T ss_pred             eeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCC
Confidence            122233458999999999999999999999999999999999873

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.87  E-value=1.9e-20  Score=161.63  Aligned_cols=168  Identities=17%  Similarity=0.340  Sum_probs=131.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........  ...+......|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   79 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI--PVSEQHWIGFLSLKSVERSDAGRYWCQV   79 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEE--EEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEE--EecCCCceEEEEEeecCcccCeEEEEEE
Confidence            34566667778899999999999999999999999999999877654433  2333444568999999999999999999


Q ss_pred             EcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670          391 KNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK  469 (540)
Q Consensus       391 ~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g  469 (540)
                      .|..|. ....+.|.|..                                              +|.+...+....+.+|
T Consensus        80 ~~~~~~~~~~~~~l~V~~----------------------------------------------~p~~~~~~~~~~~~~g  113 (182)
T 1rhf_A           80 EDGGETEISQPVWLTVEG----------------------------------------------VPFFTVEPKDLAVPPN  113 (182)
T ss_dssp             SSCTTCEECCCEEEEEEC----------------------------------------------SCEEEECCCCEEECTT
T ss_pred             EcCCCcEEEEEEEEEEec----------------------------------------------CCeEEecCcceEecCC
Confidence            998664 45677888876                                              7888877778889999


Q ss_pred             CeEEEEEEEeeecCC-ceEEEecCeecCCC--CeEEEEEE-ecCCeEEEEEEeeeeeeeeC
Q psy670          470 KTVVIECKVMSMYEP-SVTWMKEKNTVKED--NKHVVHIE-QVKDVSMNFELWLGIVEKRG  526 (540)
Q Consensus       470 ~~~~l~C~v~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~-~~~~g~y~c~~~~~~~~~~~  526 (540)
                      +.+.|.|.+.|.|.| .++|++++..+...  ....+.+. ..|.|.|+|.+.........
T Consensus       114 ~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~s  174 (182)
T 1rhf_A          114 APFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASS  174 (182)
T ss_dssp             CCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             CEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEeccccCeEEEEEEECCCCCccc
Confidence            999999999999999 99999999988654  23344333 36799999999976555443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=4.6e-21  Score=168.44  Aligned_cols=184  Identities=20%  Similarity=0.294  Sum_probs=136.8

Q ss_pred             ccCCceeecCCCCeEEEEEE-ecccCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          211 IEKPRIIPNESGTLIQMKCK-CSAKPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~-~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      ...+....+.+|+.+.|.|. +.+.|. +.+.|++++..+..............    ..|.|.+++.+|+|.|+|.+.+
T Consensus        12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C           12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN----GNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTT----CCEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCC----CeEEECcCCcccCeEEEEEEEe
Confidence            33456778889999999999 788888 99999999877643222111122122    2699999999999999999998


Q ss_pred             CCCCeee---eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          289 EFGESNA---NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       289 ~~~~~~~---~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      ..+....   .+.+.+.........+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+......    ...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~----~~~  163 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STS  163 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE----ETT
T ss_pred             cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee----cCC
Confidence            6655432   233333332222223555655555778889999999999999999999999999977654321    122


Q ss_pred             CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +.    .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       164 ~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          164 GA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             TT----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CC----EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            32    89999999999999999999999999999988885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.87  E-value=3.2e-22  Score=191.64  Aligned_cols=206  Identities=13%  Similarity=0.251  Sum_probs=154.9

Q ss_pred             CCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc
Q psy670          174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK  253 (540)
Q Consensus       174 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~  253 (540)
                      +.|.|+|.+.+....    +       ......+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus       136 ~~~~~~C~~~~~l~~----l-------~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~  204 (347)
T 2ifg_A          136 PEQKLQCHGQGPLAH----M-------PNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM  204 (347)
T ss_dssp             GGGCCCCSSSSCSSC----C-------CCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC
T ss_pred             cccCCCCCCChHHhc----C-------CcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc
Confidence            468899987662111    1       11122367777777778889999999999999999999999998876432211


Q ss_pred             eEEEEecCCCeEEEEEEEeCCCCCCcE-EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEE
Q psy670          254 IKIIVNEQDDTYEIICEITDPIGPDSG-TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVME  332 (540)
Q Consensus       254 ~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~  332 (540)
                            .........|.|.+++.+|+| .|+|.+.+..|.....+.+.|..       +|.+    ......+|+.+.|.
T Consensus       205 ------~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~-------~P~i----~~~~~~~g~~v~l~  267 (347)
T 2ifg_A          205 ------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-------PASV----QLHTAVEMHHWCIP  267 (347)
T ss_dssp             ------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE-------EEEE----EECCCEESSSEEEE
T ss_pred             ------cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC-------CCee----eeccCccCceEEEE
Confidence                  112233458999999999999 99999999988877777777655       4443    11224578999999


Q ss_pred             EEEEccCCCeEEEEECCEEccCCCceEEEEEe---cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          333 CKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       333 C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.+.|.|.|.|.|+++|..+............   +......+|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       268 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             EEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            99999999999999999999866554443322   1223345899999999999999999999999999998888765

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.87  E-value=5.6e-21  Score=166.08  Aligned_cols=172  Identities=24%  Similarity=0.463  Sum_probs=129.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC--CceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--GRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      +..+.+|+.+.|.|.+.+.|.+.+.|++++..+...  .+.....     +.   .|.|.+++.+|+|.|+|.+.+..+.
T Consensus        11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~---~L~i~~~~~~d~G~Y~C~~~~~~~~   82 (189)
T 2v5t_A           11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-----NN---NLQILNINKSDEGIYRCEGRVEARG   82 (189)
T ss_dssp             SEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-----TS---CEEETTCCGGGCEEEEEEEEETTTT
T ss_pred             CEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-----CC---CEEEeeCCHhHCcEEEEEEEEcCCC
Confidence            457889999999999999999999999998877532  3333221     11   6999999999999999999987643


Q ss_pred             e--EEEEEEEEecCcCCCCCCCeeccCCc--eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCe
Q psy670          189 S--NANIALNFQGGENGAGFAPSFIEKPR--IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT  264 (540)
Q Consensus       189 ~--~~~~~l~v~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~  264 (540)
                      .  ...+.+.+..       +|.+...+.  ...+.+|+.+.|.|.+.+.|.+.+.|++++..+..........  ..  
T Consensus        83 ~~~~~~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~--  151 (189)
T 2v5t_A           83 EIDFRDIIVIVNV-------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SN--  151 (189)
T ss_dssp             EEEEEEEEEEEEE-------EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET--TT--
T ss_pred             ceEEEEEEEEecC-------CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec--CC--
Confidence            3  3455666654       444443332  4567889999999999999999999999999987766544321  11  


Q ss_pred             EEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                        ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+
T Consensus       152 --~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          152 --TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             --TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             --CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence              2699999999999999999999999888887777753

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=3.1e-21  Score=173.60  Aligned_cols=186  Identities=23%  Similarity=0.417  Sum_probs=140.5

Q ss_pred             ceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE-EEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          215 RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ......    ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGG----TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCc----ceEEEecCCcccCEEEEEEEecccCcc
Confidence            567788999999999999999999999999998865543211 111111    269999999999999999999998887


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCCCeEEEEE----CCEEccCCCceEEEEEecC--
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPMPEIVWFH----EGKELQQTDRISWNVTLKG--  366 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~----~~~~~~~~~~~~~~~~~~~--  366 (540)
                      .....+.|...+.   .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+..............  
T Consensus       103 ~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  179 (231)
T 3ojm_B          103 NHTYHLDVVERSR---HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI  179 (231)
T ss_dssp             EEEEEEEEECCCC---CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred             cccEEEEEEcCCC---CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence            7777777765331   1333332 2456778899999999999999999999999    7777655443222211111  


Q ss_pred             -CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          367 -DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       367 -~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                       ......|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  221 (231)
T 3ojm_B          180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLP  221 (231)
T ss_dssp             TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEec
Confidence             11112799999999999999999999999999999999887

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.86  E-value=4.1e-21  Score=172.78  Aligned_cols=189  Identities=20%  Similarity=0.345  Sum_probs=140.6

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+....+........ ..   ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-QH---WSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeec-Cc---ceEEEecCCcccCEEEEEEEecccCcc
Confidence            45578899999999999999999999999999886543331111111 11   279999999999999999999998888


Q ss_pred             EEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecccCCCeEEEEe----CCEEeeccCceEEEE---ecC
Q psy670          190 NANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----ADKLVKESSKIKIIV---NEQ  261 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~l~~~~~~~~~~---~~~  261 (540)
                      ...+.|.|...+.   .+|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+..........   ...
T Consensus       103 ~~~~~l~V~~~~~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  179 (231)
T 3ojm_B          103 NHTYHLDVVERSR---HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI  179 (231)
T ss_dssp             EEEEEEEEECCCC---CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred             cccEEEEEEcCCC---CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence            8888888875332   133332 23456677889999999999999999999999    777665443221111   111


Q ss_pred             CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670          262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       262 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       180 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             TCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence            11112369999999999999999999999988888888887644

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.86  E-value=7.8e-21  Score=168.47  Aligned_cols=182  Identities=12%  Similarity=0.161  Sum_probs=125.5

Q ss_pred             CCceeecCCC--CeEEEEEEecccCCCeEEEEeC---CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          213 KPRIIPNESG--TLIQMKCKCSAKPRPEVKWFKA---DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       213 ~~~~~~~~~g--~~~~l~C~~~~~p~~~v~W~~~---~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      .+..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+........  ...     ..|.|.+++.+|+|.|+|.|.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~--~~~-----~~l~I~~v~~~D~G~Y~C~a~   84 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW--DSK-----KGFTIPSYMISYAGMVFCEAK   84 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEE--ETT-----TEEEEEGGGTTTCSEEEEEEC
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccc--cCC-----ccEEEccCChhcCceEEEEEE
Confidence            4567888999  99999999976 7789999884   555554433222  111     158999999999999999999


Q ss_pred             cCCCCeee-eEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccC--CCeEEEEECCEEccCCCceEEEEE
Q psy670          288 NEFGESNA-NLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEGKELQQTDRISWNVT  363 (540)
Q Consensus       288 ~~~~~~~~-~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~~~~~  363 (540)
                      +..+.... .+.+.|...     .+|.+.. .+....+.+|+.++|.|.+.+.|  .+.+.|+++|..+...........
T Consensus        85 n~~~~~~s~~~~l~v~~~-----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~  159 (213)
T 2x1w_L           85 INDESYQSIMYIVVVVGY-----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK  159 (213)
T ss_dssp             ----CEECCCEEEEECBC-----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEEC
T ss_pred             ECCeeEEEEEEEEEEeCC-----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccc
Confidence            85443322 255555331     1333433 34445789999999999999865  458999999876533211000000


Q ss_pred             ecC----CeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          364 LKG----DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       364 ~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ...    ....++|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       160 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          160 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             CCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            000    22345899999999999999999999999999999999987

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.86  E-value=4.9e-21  Score=168.11  Aligned_cols=166  Identities=14%  Similarity=0.293  Sum_probs=128.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C~   72 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRCQ   72 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEEE
Confidence            45566666667788999999999999987765 99999998876543              2799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEe
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      +.+.  ..+..+.|.|..       ++.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+...        .
T Consensus        73 a~n~--~~s~~~~l~V~~-------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~--------~  134 (204)
T 3sgj_C           73 TQLS--TLSDPVQLEVHI-------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--------H  134 (204)
T ss_dssp             ETTS--BCCCCEEEEEEC-------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------E
T ss_pred             eCCC--cccccEEEEEec-------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc--------c
Confidence            9874  344556677764       445555444 567789999999999765 56789999999876321        1


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEc-CCeeeEEEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKN-FHGELNANLTLNIEMV  408 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~  408 (540)
                      .+.    .|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|..+
T Consensus       135 ~~~----~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          135 HNS----DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             ECC----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             CCc----eEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence            111    799999999999999999999 4455677788888763

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=1.4e-21  Score=178.63  Aligned_cols=210  Identities=18%  Similarity=0.252  Sum_probs=120.9

Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeC
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKA  244 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~  244 (540)
                      ++..|+|.|+|.|.   |.....+.+.+..       ++.+...+....+.+|++++|.|.+.+.|     .+.+.|+++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~-------~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLR-------ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             -------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheee-------ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            57889999999998   3333333333332       45566667788899999999999999877     378999984


Q ss_pred             C--EEee----------c--cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCC
Q psy670          245 D--KLVK----------E--SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEG  309 (540)
Q Consensus       245 ~--~~l~----------~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~  309 (540)
                      +  ..+.          .  ..++.....    .....|.|.+++.+|+|.|+|.+.+..+.. .....+.|....    
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~----  152 (254)
T 2c1o_A           81 RPGQSPKRLIYLVSKLDSGDPDRFTGSGS----GTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD----  152 (254)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC----
T ss_pred             CCCCCceEEEEeccccCCCccceEEEecC----CCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC----
Confidence            3  2211          0  122222211    112479999999999999999999875532 223345554321    


Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC---eeEEEEEEcCCCCCCCe
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD---KYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G  384 (540)
                      .+|.+...+.......|+.++|.|.+.+. |+ +.+.|+++|..+.............++   ...+.|.|.++..+|+|
T Consensus       153 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          153 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  232 (254)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCC
Confidence            24555443322223357899999999984 44 469999999987654111111111111   12458999999999999


Q ss_pred             eEEEEEEcCCeee
Q psy670          385 LYKCNIKNFHGEL  397 (540)
Q Consensus       385 ~Y~C~a~n~~g~~  397 (540)
                      .|+|.|.|.....
T Consensus       233 ~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          233 SYTCEATHKTSTS  245 (254)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             eEEEEEEcCCCCC
Confidence            9999999987654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.86  E-value=3.4e-21  Score=170.86  Aligned_cols=180  Identities=19%  Similarity=0.314  Sum_probs=129.4

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..            ..+...  ..      ..|.|.+++.
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~------~~L~i~~v~~   74 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SS------SGITFSSVTR   74 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ET------TEEEESCCCG
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe--ec------eeEEEcccCc
Confidence            344556777888999999999999989999999998765311            112211  11      3799999999


Q ss_pred             CCcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEE-EEccCCCeEEEEECCE-Ec
Q psy670          277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECK-VKAKPMPEIVWFHEGK-EL  352 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~i~W~~~~~-~~  352 (540)
                      +|+|.|+|.+.+..|  .....+.|.|...       |.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+
T Consensus        75 ~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l  147 (212)
T 1f97_A           75 KDNGEYTCMVSEEGGQNYGEVSIHLTVLVP-------PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISML  147 (212)
T ss_dssp             GGCEEEEEEEEETTSSSEEEEEEEEEEEBC-------CCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESB
T ss_pred             ccCeEEEEEEEccCCCcccEEEEEEEEEcC-------CCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccc
Confidence            999999999999876  3455566666652       22222223346788999999999 7899999999999999 77


Q ss_pred             cCCCce-------EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEEE
Q psy670          353 QQTDRI-------SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIEM  407 (540)
Q Consensus       353 ~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~  407 (540)
                      ......       .........    .|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          148 TADAKKTRAFMNSSFTIDPKSG----DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             C-----CBSCSSSCEEECTTTC----CEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccccccccccCceeEecCCCc----eEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            653321       111111222    79999999999999999999999987  4556666654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=1.6e-21  Score=178.21  Aligned_cols=210  Identities=16%  Similarity=0.177  Sum_probs=116.6

Q ss_pred             cccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecC-----CCceEEE
Q psy670           63 VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASP-----MPDIIWY  137 (540)
Q Consensus        63 ~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p-----~~~v~W~  137 (540)
                      ++.+|+|.|+|.|.   |.......+.+...+ .+..        ......+.+|++++|.|.+.+.|     .+.+.|+
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~-~~~~--------~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~   78 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLREL-VMTQ--------SPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWL   78 (254)
T ss_dssp             ------------------------------CC-CEEE--------ECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeece-eEEe--------CCceEEecCCCcEEEEeeccCcccccCCCCceEEE
Confidence            78999999999998   333333333222211 1110        12345788999999999998877     4799999


Q ss_pred             eCC--Eee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC
Q psy670          138 QGT--KVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-NANIALNFQGGEN  202 (540)
Q Consensus       138 ~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~  202 (540)
                      |++  ..+          .  ...++....     ....++|.|.+++.+|+|.|+|.+.+..+.. .....+.|.... 
T Consensus        79 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~-  152 (254)
T 2c1o_A           79 LQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-----SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD-  152 (254)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC-
T ss_pred             EeCCCCCceEEEEeccccCCCccceEEEec-----CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC-
Confidence            842  221          0  113333322     1123489999999999999999999876532 223355554321 


Q ss_pred             CCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEE-ecCCC--eEEEEEEEeCCCCC
Q psy670          203 GAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIV-NEQDD--TYEIICEITDPIGP  277 (540)
Q Consensus       203 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~-~~~~~--~~~~~l~i~~~~~~  277 (540)
                         .+|.+...+.......|+.++|.|.+.+ .|+ +.+.|+++|..+.......... ....+  ...+.|.|.++..+
T Consensus       153 ---~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~  229 (254)
T 2c1o_A          153 ---AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE  229 (254)
T ss_dssp             ---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred             ---CCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecccccc
Confidence               2455544333222335779999999988 454 4699999999876541111111 11122  23468999999999


Q ss_pred             CcEEEEEEEEcCCCCe
Q psy670          278 DSGTYRCNVKNEFGES  293 (540)
Q Consensus       278 d~g~y~C~~~~~~~~~  293 (540)
                      |+|.|+|.|.|.....
T Consensus       230 d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          230 RHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TCCEEEEEEECTTCSS
T ss_pred             CCCeEEEEEEcCCCCC
Confidence            9999999999976543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.85  E-value=8.1e-21  Score=168.39  Aligned_cols=179  Identities=23%  Similarity=0.383  Sum_probs=132.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCce---EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRI---KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+......   .... ..........|.|.+++.+|+|.|+|.+.+..+
T Consensus        18 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g   96 (212)
T 2v9r_A           18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML-LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG   96 (212)
T ss_dssp             CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEE-CTTSCEEESSCCCCSSCCCSCEEEEEEEEETTE
T ss_pred             ceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEE-ecCCcEEEEEEEecCCCcccCeEEEEEEECCCC
Confidence            456889999999999999999999999999887543210   0000 011112223466678899999999999999887


Q ss_pred             ee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCceEEEEecCCCeE
Q psy670          188 ES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY  265 (540)
Q Consensus       188 ~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~  265 (540)
                      .. ...+.|.|...      ++.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........      
T Consensus        97 ~~~~~~~~l~V~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~------  164 (212)
T 2v9r_A           97 EAVSHDASLEVAIL------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG------  164 (212)
T ss_dssp             EEECCCEEEEECEE------CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEET------
T ss_pred             ceeecceEEEEEec------cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccC------
Confidence            65 44566666542      3344455566678889999999999 8899999999999999876543322221      


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCCeee-eEEEEEee
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGESNA-NLNLNIEA  303 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~  303 (540)
                       ..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..
T Consensus       165 -~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          165 -GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             -TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence             17999999999999999999999887554 37788776

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=166.99  Aligned_cols=167  Identities=18%  Similarity=0.315  Sum_probs=133.3

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....              ..|.|.+++.+|+|.|+|.+.+..+..
T Consensus        26 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           26 ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--------------SELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             CCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS--------------SEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC--------------CEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            345688999999999999999999999999998865432              189999999999999999999987654


Q ss_pred             -EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec
Q psy670          190 -NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE  260 (540)
Q Consensus       190 -~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~  260 (540)
                       +..+.|.|...+..        ...+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....       
T Consensus        92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~-------  164 (218)
T 3k0w_A           92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------  164 (218)
T ss_dssp             ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS-------
T ss_pred             eeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC-------
Confidence             55567777653210        11135666667777888999999999999999999999999988865432       


Q ss_pred             CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEee
Q psy670          261 QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEA  303 (540)
Q Consensus       261 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~  303 (540)
                            ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus       165 ------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          165 ------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             ------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred             ------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence                  16999999999999999999998776 45566676654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=6.6e-20  Score=158.51  Aligned_cols=168  Identities=19%  Similarity=0.386  Sum_probs=125.4

Q ss_pred             eecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          217 IPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       217 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ..+.+|+.+.|.|.+.+.|.+  .+.|++++..+......         .....|.|.  +.+|+|.|+|.+.+.   ..
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n~---~~   73 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLPE---PM   73 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEEST---TS
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEECC---cC
Confidence            345679999999999887666  89999999888655421         112356665  688999999999983   23


Q ss_pred             eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-CCeEEEEE---CC-EEccCCCceEEEEEecCCee
Q psy670          295 ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFH---EG-KELQQTDRISWNVTLKGDKY  369 (540)
Q Consensus       295 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~---~~-~~~~~~~~~~~~~~~~~~~~  369 (540)
                      ..+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++ ..+......++....++.  
T Consensus        74 ~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (184)
T 3b5h_A           74 GTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG--  144 (184)
T ss_dssp             CEEEEEECC-------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT--
T ss_pred             cEEEEEEec-------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCC--
Confidence            556677755       66666666677788999999999999999 79999999   44 444332212222223332  


Q ss_pred             EEEEEEcCCC-CCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          370 HIRLEVKDPR-KEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       370 ~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|..
T Consensus       145 ~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             eeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            2389999999 8999999999999999999888888753

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=1.6e-20  Score=160.81  Aligned_cols=165  Identities=15%  Similarity=0.282  Sum_probs=126.8

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~--------------~~L~i~~~~~~d~G~Y~C~   72 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYRCQ   72 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc--------------eEEEEeCCCcccCEEEEEE
Confidence            56666667766788999999999999987665 89999998876422              1799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEe
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      +.+..+  +..+.+.|..       ++.++..+ ...+.+|+.+.|.|.+.+.+++ .+.|+++|..+...        .
T Consensus        73 ~~n~~~--s~~~~l~V~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--------~  134 (175)
T 1fnl_A           73 TNLSTL--SDPVQLEVHI-------GWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------H  134 (175)
T ss_dssp             CSSSCC--CCCEEEEEEC-------SSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------E
T ss_pred             eeCCcc--cccEEEEEeC-------CCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--------C
Confidence            998544  4455666653       33344433 3567899999999999987665 99999999877321        1


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM  407 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  407 (540)
                      .+.    .|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus       135 ~~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          135 HNS----DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             ECC----CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCC----EEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            111    7999999999999999999997654 55677777754

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.85  E-value=4.6e-20  Score=161.23  Aligned_cols=183  Identities=16%  Similarity=0.221  Sum_probs=128.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|++++..+.....     ..........|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQ-----NPLEPKNKARFSIPSMTEDYAGRYRCYY   77 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEE-----CCCSSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccc-----ccccCCceEEEEeccCCcccCceEEEEE
Confidence            5566655655 6778999999999988 6789999999987643211     0011122357999999999999999999


Q ss_pred             EcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .|..+  ..+..+.|.|....    .+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+++|..+........... 
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~~----~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~-  150 (196)
T 3p2t_A           78 RSPVGWSQPSDPLELVMTGAY----SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGA-  150 (196)
T ss_dssp             EETTEEBCCCCCEEEEEECSS----CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEE-
T ss_pred             eCCCcccCCCccEEEEecCCC----CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccc-
Confidence            99877  33556677775432    14555554443 67899999999999874 458999999987754332211111 


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNI  405 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V  405 (540)
                        ......|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|
T Consensus       151 --~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          151 --QQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             --EEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             --cCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence              11233899999999999999999999876     2334455554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=2.1e-20  Score=165.72  Aligned_cols=174  Identities=17%  Similarity=0.314  Sum_probs=127.0

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....+.....         ..|.|.+++.+|+|.
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---------~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS---------SGITFSSVTRKDNGE   79 (212)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET---------TEEEESCCCGGGCEE
T ss_pred             CCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec---------eeEEEcccCcccCeE
Confidence            3456889999999999998899999999977552            1123333221         289999999999999


Q ss_pred             EEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEE-ecccCCCeEEEEeCCE-EeeccCc
Q psy670          178 YRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADK-LVKESSK  253 (540)
Q Consensus       178 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~l~~~~~  253 (540)
                      |+|.+.+..|  .....+.|.|..       +|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~  152 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLV-------PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK  152 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEB-------CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred             EEEEEEccCCCcccEEEEEEEEEc-------CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence            9999999866  456777788875       333333233345678999999999 6889999999999998 7765332


Q ss_pred             e-------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe--eeeEEEEEee
Q psy670          254 I-------KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES--NANLNLNIEA  303 (540)
Q Consensus       254 ~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~l~v~~  303 (540)
                      .       ........    ..|.|.+++.+|.|.|+|.|.|..|..  +..+.|.|..
T Consensus       153 ~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          153 KTRAFMNSSFTIDPKS----GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             -CBSCSSSCEEECTTT----CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             ccccccCceeEecCCC----ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            1       11111111    269999999999999999999999987  4455555543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.84  E-value=1.2e-20  Score=161.89  Aligned_cols=166  Identities=16%  Similarity=0.292  Sum_probs=125.4

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc--------------eEEEEeccceecCEEEEEE
Confidence            5666666777778899999999999987775 699999998876432              2799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      +.+..+.  ..+.+.|..       ++.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.....       
T Consensus        70 ~~~~~~s--~~~~l~V~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~-------  132 (176)
T 1f2q_A           70 HQQVNES--EPVYLEVFS-------DWLLLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------  132 (176)
T ss_dssp             CTTSSCC--CCEEEEEEC-------SSEEEEES-CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------
T ss_pred             cCCcccc--ccEEEEEeC-------cceeecCC-cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecC-------
Confidence            9886543  445566652       33343333 34677999999999995 566779999999998853221       


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-eeEEEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-ELNANLTLNIEMV  408 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~  408 (540)
                       +.    .|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|..+
T Consensus       133 -~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          133 -NH----NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             -SS----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             -CC----eEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence             11    799999999999999999999654 4456678887763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.84  E-value=2.7e-20  Score=165.65  Aligned_cols=179  Identities=22%  Similarity=0.431  Sum_probs=134.8

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.............++.....|.|.+++.+|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            47888888888899999999999999999999999999999987653222222233333333457889999999999999


Q ss_pred             EEcCCeee-EEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecC
Q psy670          390 IKNFHGEL-NANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISK  468 (540)
Q Consensus       390 a~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~  468 (540)
                      +.|..|.. .....|.|...                                             +|.+...+....+.+
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~---------------------------------------------~~~~~~~~~~~~~~~  122 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVL---------------------------------------------RDDFRVEPKDTRVAK  122 (217)
T ss_dssp             EEETTEEEECCCEEEEECEE---------------------------------------------CCSCSBCCCCEEECT
T ss_pred             EecCCCccccccceEEEEEe---------------------------------------------CCCcEECCCccEEcC
Confidence            99998865 34566666541                                             445555566778899


Q ss_pred             CCeEEEEEEE-eeecCCceEEEecCeecCC--------CCeE------EE---EEEecCCeEEEEEEeeeeeeeeCCeeE
Q psy670          469 KKTVVIECKV-MSMYEPSVTWMKEKNTVKE--------DNKH------VV---HIEQVKDVSMNFELWLGIVEKRGPSIK  530 (540)
Q Consensus       469 g~~~~l~C~v-~g~p~~~v~W~~~~~~l~~--------~~~~------~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~  530 (540)
                      |+.++|.|.+ .|.|.+.++|+++|..+..        ..+.      .+   .+...|.|.|+|.+.............
T Consensus       123 g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~  202 (217)
T 2vr9_A          123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK  202 (217)
T ss_dssp             TSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred             CCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence            9999999999 8999999999999998872        2221      12   345578999999999877666665554


Q ss_pred             EEE
Q psy670          531 IIY  533 (540)
Q Consensus       531 ~~~  533 (540)
                      +++
T Consensus       203 lv~  205 (217)
T 2vr9_A          203 LIV  205 (217)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=8.1e-20  Score=157.97  Aligned_cols=165  Identities=19%  Similarity=0.371  Sum_probs=124.5

Q ss_pred             ccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ..+.+|++++|.|.+.+.|.+  .+.|+|++..+........          ...|.|.  +.+|+|.|+|.+.+..   
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~----------~~~l~i~--~~~d~G~Y~C~~~n~~---   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------KTEFKVD--SDDQWGEYSCVFLPEP---   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS----------EEEEEEC--GGGCCEEEEEEEESTT---
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCC----------cEEEEEe--chhhCeEEEEEEECCc---
Confidence            456789999999999887777  8999999998865532211          2256666  6899999999999832   


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEe---CCEE-eecc--CceEEEEecCC
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK---ADKL-VKES--SKIKIIVNEQD  262 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~-l~~~--~~~~~~~~~~~  262 (540)
                      ...+.|.|..       +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++   ++.. +...  .++.+...  .
T Consensus        73 ~~~~~l~V~~-------~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~  143 (184)
T 3b5h_A           73 MGTANIQLHG-------PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS--Q  143 (184)
T ss_dssp             SCEEEEEECC-------SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE--T
T ss_pred             CcEEEEEEec-------CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec--C
Confidence            2456677764       66676666677788999999999999998 79999999   4544 3322  33333221  1


Q ss_pred             CeEEEEEEEeCCC-CCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          263 DTYEIICEITDPI-GPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       263 ~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                        ....|.|.+++ .+|.|.|+|.|.|..|.....+.|.|.
T Consensus       144 --~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          144 --GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             --TEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             --CeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence              12479999999 899999999999999988877777764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.84  E-value=3.9e-20  Score=162.10  Aligned_cols=176  Identities=20%  Similarity=0.276  Sum_probs=121.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCC-EeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGT-KVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|++++|.|.+.|.|.+.+.|+++. ..+.  ......    + .  ...|.|.+++.+|+|.|+|.+.|..+...
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~~----~-~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   81 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNE----G-T--TSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEE----T-T--EEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEEc----C-C--ccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence            34569999999999999999999999843 2221  111110    1 1  23799999999999999999999988888


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC--CeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR--PEVKWFKADKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                      ..+.|.|...+.    .+.+.  +. ..+.+|+.++|.|.+.+. |.  +.+.|++++..+..................+
T Consensus        82 ~~~~l~V~~~p~----~~~~~--~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~  154 (202)
T 1vca_A           82 KGIQVEIYSFPK----DPEIH--LS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSL  154 (202)
T ss_dssp             EEEEEEEEBCCS----CCEEE--ES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEE
T ss_pred             eEEEEEEEeCCC----CCEeC--Cc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEE
Confidence            888898886322    12222  12 456789999999999874 43  3799999998875431100000000123345


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCCC-------eeeeEEEEEee
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFGE-------SNANLNLNIEA  303 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~~-------~~~~~~l~v~~  303 (540)
                      .|.|.....+|.|.|+|.|.|..+.       ...++.|.|.+
T Consensus       155 ~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          155 EVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             EEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             EEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            6788888888999999999998765       24456666665

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=164.68  Aligned_cols=178  Identities=17%  Similarity=0.251  Sum_probs=131.9

Q ss_pred             CCccccCCCeEEEEEE-EeecCC-CceEEEeCCEeecC--CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          110 KPTIHQDGDLLVMECV-LEASPM-PDIIWYQGTKVIED--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~-~~~~p~-~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ....+.+|+.+.|.|. +.+.|. +.+.|++++..+..  ..+....    ..+   ..|.|.+++.+|+|.|+|.+.+.
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~----~~~---~~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS----QTN---GNLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEEC----TTT---CCEEESSCCGGGCEEEEEEEEEG
T ss_pred             ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEE----cCC---CeEEECcCCcccCeEEEEEEEec
Confidence            4567899999999999 788888 89999999877642  2222111    111   27999999999999999999986


Q ss_pred             CceeE---EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCC
Q psy670          186 IGESN---ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD  262 (540)
Q Consensus       186 ~~~~~---~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~  262 (540)
                      .+...   ..+.+.+.........+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......  .  ...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~--~--~~~  164 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI--S--TSG  164 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEE--E--TTT
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceee--c--CCC
Confidence            65443   2344444432222233555655555677889999999999999999999999999877644221  1  111


Q ss_pred             CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       263 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                          ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus       165 ----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          165 ----AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence                279999999999999999999999988888877774

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.83  E-value=3.4e-20  Score=162.73  Aligned_cols=156  Identities=20%  Similarity=0.280  Sum_probs=120.0

Q ss_pred             ccccCCCeEEEEEEEeecCCCc-eEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPD-IIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|++++|.|.+.+.|.+. +.|+|+|..+....               ..|.|.+++.+|+|.|+|.+.+.  ..+
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~C~a~n~--~~s   79 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYRCQTQLS--TLS   79 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEEEEETTS--BCC
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEEEEeCCC--ccc
Confidence            4688999999999998888775 99999999886543               18999999999999999999874  334


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      ..+.|.|..       +|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+.....            ...|
T Consensus        80 ~~~~l~V~~-------~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~------------~~~L  139 (204)
T 3sgj_C           80 DPVQLEVHI-------GWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH------------NSDF  139 (204)
T ss_dssp             CCEEEEEEC-------SSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE------------CCCE
T ss_pred             ccEEEEEec-------CceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccC------------CceE
Confidence            456666664       444443333 556789999999999764 6678999999988643211            1269


Q ss_pred             EEeCCCCCCcEEEEEEEEcC-CCCeeeeEEEEEeec
Q psy670          270 EITDPIGPDSGTYRCNVKNE-FGESNANLNLNIEAE  304 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~l~v~~~  304 (540)
                      .|.+++.+|+|.|+|.|.|. .+..+..+.|.|...
T Consensus       140 ~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          140 YIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG  175 (204)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence            99999999999999999994 444566677777654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.83  E-value=5.1e-20  Score=161.36  Aligned_cols=176  Identities=12%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             eecCCCCeEEEEEEecccCCCeEEEEeCC-EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          217 IPNESGTLIQMKCKCSAKPRPEVKWFKAD-KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       217 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ..+.+|+.+.|.|.+.|.|.+.+.|++.. ..+.  ..  .... . .  ...|.|.+++.+|+|.|+|.|.|..+..+.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~--~~~~-~-~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GK--VTNE-G-T--TSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SE--EEEE-T-T--EEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ce--EEEc-C-C--ccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            34458999999999999999999999843 2111  11  1111 1 1  236999999999999999999998887777


Q ss_pred             eEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCCeeEEE
Q psy670          296 NLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGDKYHIR  372 (540)
Q Consensus       296 ~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (540)
                      .+.|.|...+.    .+.+..  . ..+.+|+.++|.|.+.+.++   +.|.|++++..+..................+.
T Consensus        83 ~~~l~V~~~p~----~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~  155 (202)
T 1vca_A           83 GIQVEIYSFPK----DPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE  155 (202)
T ss_dssp             EEEEEEEBCCS----CCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEE
T ss_pred             EEEEEEEeCCC----CCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEE
Confidence            77888876321    122222  2 45789999999999998543   37999999987743210000000000122346


Q ss_pred             EEEcCCCCCCCeeEEEEEEcCCee-------eEEEEEEEEEE
Q psy670          373 LEVKDPRKEDTGLYKCNIKNFHGE-------LNANLTLNIEM  407 (540)
Q Consensus       373 L~i~~~~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~  407 (540)
                      |.|.....+|.|.|+|+|.|..+.       ...++.|.|..
T Consensus       156 l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y  197 (202)
T 1vca_A          156 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI  197 (202)
T ss_dssp             EEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred             EEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEec
Confidence            788888888899999999998765       35667777776

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.83  E-value=6.9e-20  Score=167.72  Aligned_cols=255  Identities=15%  Similarity=0.200  Sum_probs=106.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCc-eEEEeC--CEee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPD-IIWYQG--TKVI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~-v~W~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ...+.+|+++.|+|.+. .+.+. +.|.-.  ...+ ..+.             ....|.|.+++.+  |.|+|.+....
T Consensus         8 ~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~g~-------------~~~~~~l~~v~~~--~~y~C~~~~~~   71 (291)
T 1mq8_A            8 KVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLPGN-------------NRKVYELSNVQED--SQPMCYSNCPD   71 (291)
T ss_dssp             EEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCSCS-------------SEEEEEEESCCSC--CCCEEEEECSS
T ss_pred             ccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccCCC-------------ceEEEEEEecccC--CeEEEEEEcCC
Confidence            35788999999999995 45554 888531  1111 1111             1115788888754  46999997655


Q ss_pred             ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCC
Q psy670          187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDD  263 (540)
Q Consensus       187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~  263 (540)
                      ......+.|.|...+.    .+.+.  +....+.+|+.++|.|.+.+ .|..  +|+|++++..+.....       ...
T Consensus        72 ~~~~~~v~l~V~~~P~----~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~  138 (291)
T 1mq8_A           72 GQSTAKTFLTVYWTPE----RVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGE  138 (291)
T ss_dssp             CEEEEECEEEECBCCS----CCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBT
T ss_pred             ccEEEEEEEEEecCCC----CCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCC
Confidence            4567778888886443    22222  22244778999999999987 5654  5899999988754331       112


Q ss_pred             eEEEEEEEeCCCCCCcEEEEEEEEcCCCC--------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670          264 TYEIICEITDPIGPDSGTYRCNVKNEFGE--------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV  335 (540)
Q Consensus       264 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~  335 (540)
                      ....++.+...+.++.+.|+|+|.+..+.        .+....+.|.+.+..   .+.+. .+  ..+.+|+.++|+|.+
T Consensus       139 ~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~---~~~~~-~p--~~l~eG~~v~l~C~~  212 (291)
T 1mq8_A          139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT---PPQLV-SP--RVLEVDTQGTVVCSL  212 (291)
T ss_dssp             TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------------
T ss_pred             CceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC---Cceec-CC--cCccCCCeEEEEEEc
Confidence            23456777777777778999999987542        244456666653211   12221 12  257789999999999


Q ss_pred             EccCCC---eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          336 KAKPMP---EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       336 ~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.+++   .+.|+++|..+.....      .+++...+++.+.. ..  ++.+.|+|.|.|..........|.|..
T Consensus       213 ~g~~P~~~~~v~w~~~g~~l~~~~~------~~g~~~~~~~~~~~-~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~  282 (291)
T 1mq8_A          213 DGLFPVSEAQVHLALGDQRLNPTVT------YGNDSFSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYS  282 (291)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CCCCCCcccEEEEEECCEecCceee------ecCCeEEEEEecce-eEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence            997554   5899999998865321      12332222333221 23  335678899987655566677777765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.83  E-value=1.3e-19  Score=158.69  Aligned_cols=185  Identities=16%  Similarity=0.245  Sum_probs=122.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+. ..+.+|+.++|.|.+.+.|. .+.|++++..+........ .....    ..|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~-~~~~~----~~L~i~~v~~~D~G~Y~C~a   77 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ-ELVKK----GQFPIPSITWEHTGRYRCYY   77 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH-HHHTT----TEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc-cCCcc----cEEEECCCCHHHCeEEEEEE
Confidence            566665555 36779999999999988765 7999999987642211000 00011    26999999999999999999


Q ss_pred             EcCC-C--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEE
Q psy670          287 KNEF-G--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVT  363 (540)
Q Consensus       287 ~~~~-~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  363 (540)
                      .|.. +  ..+..+.|.|...+    .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+...... ....
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~-~~~~  150 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTGAY----IKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLN-SQPH  150 (198)
T ss_dssp             EETTTEECCCCCCEEEEEECSS----CCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEE-C---
T ss_pred             ECCCCCcccCCccEEEEEcccc----cCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccc-cccc
Confidence            9976 4  33556777776522    144554443 3567899999999999888 7899999999877432211 0011


Q ss_pred             ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-----eEEEEEEEEE
Q psy670          364 LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-----LNANLTLNIE  406 (540)
Q Consensus       364 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~  406 (540)
                      .. ......|.|.+++.+|+|.|+|.|.|..+.     .+..+.|.|.
T Consensus       151 ~~-~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          151 AR-GSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             ----CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             CC-CcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            11 111238999999999999999999998652     1445555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.83  E-value=7.4e-21  Score=182.13  Aligned_cols=175  Identities=18%  Similarity=0.252  Sum_probs=134.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCe-EEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG-NYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+......       .......+|.|.+++.+|+| .|+|.+.+..|..
T Consensus       167 ~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~  239 (347)
T 2ifg_A          167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA  239 (347)
T ss_dssp             SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEEC
T ss_pred             ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCeEEEEEEcCCCCE
Confidence            456789999999999999999999999988654321110       01122348999999999999 9999999999888


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec---CCCeEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE---QDDTYE  266 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~---~~~~~~  266 (540)
                      ...+.|.|..       +|.+    ......+|+.+.|.|.+.|.|.+.+.|+++|..+............   ......
T Consensus       240 ~~~~~l~V~~-------~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~  308 (347)
T 2ifg_A          240 EVSVQVNVSF-------PASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH  308 (347)
T ss_dssp             CEEECCCCBE-------EEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEE
T ss_pred             EEEEEEEEcC-------CCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccc
Confidence            7777777764       4543    1223456899999999999999999999999998865544433222   222345


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      .+|.|.+++.+|+|.|+|.|.|..|....++.+.|..
T Consensus       309 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          309 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             eEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            6899999999999999999999999887777776654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.83  E-value=8.9e-20  Score=159.36  Aligned_cols=175  Identities=15%  Similarity=0.206  Sum_probs=114.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+.. .+.+|++++|.|.+.+.|. .+.|++++..+.....     ..........|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-----NPLEPKNKARFSIPSMTEHHAGRYRCYY   77 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-----CCCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-----cccCCccccEEEeccCChhHCeEEEEEE
Confidence            5666655553 6779999999999988765 9999999987643211     0011122347999999999999999999


Q ss_pred             EcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .|..+..  +..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+.......  ...
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~--~~~  149 (196)
T 2d3v_A           78 YSPAGWSEPSDPLELVVTGFY----NKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS--QLT  149 (196)
T ss_dssp             EETTEECBCCCCEEEEEECSS----CCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEEC--EEC
T ss_pred             eCCCCcCCcCccEEEEecCCC----CCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc--ccc
Confidence            9876532  345667776522    145554443 34678999999999999988 8999999998774321110  011


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..+.....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          150 PSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             TTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             cCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence            11223348999999999999999999998753

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=6.9e-20  Score=162.36  Aligned_cols=179  Identities=11%  Similarity=0.143  Sum_probs=122.9

Q ss_pred             CccccCC--CeEEEEEEEeecCCCceEEEeC---CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          111 PTIHQDG--DLLVMECVLEASPMPDIIWYQG---TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       111 ~~~v~~G--~~v~l~C~~~~~p~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .+.+.+|  ++++|.|.+.+ |.+.+.|+++   +..+....+.....     ..   .|.|.+++.+|+|.|+|.+.+.
T Consensus        16 ~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~-----~~---~l~I~~v~~~D~G~Y~C~a~n~   86 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDS-----KK---GFTIPSYMISYAGMVFCEAKIN   86 (213)
T ss_dssp             EEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEET-----TT---EEEEEGGGTTTCSEEEEEEC--
T ss_pred             EEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccC-----Cc---cEEEccCChhcCceEEEEEEEC
Confidence            4567899  99999999965 7789999884   66665543333221     11   6999999999999999999885


Q ss_pred             Ccee-EEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecccC--CCeEEEEeCCEEeeccCceEEEEecC
Q psy670          186 IGES-NANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKADKLVKESSKIKIIVNEQ  261 (540)
Q Consensus       186 ~~~~-~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~l~~~~~~~~~~~~~  261 (540)
                      .+.. +..+.|.|...     .+|.+.. .+....+.+|+.++|.|.+.+.|  .+.+.|++++..+.............
T Consensus        87 ~~~~~s~~~~l~v~~~-----~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~  161 (213)
T 2x1w_L           87 DESYQSIMYIVVVVGY-----RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ  161 (213)
T ss_dssp             --CEECCCEEEEECBC-----CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCC
T ss_pred             CeeEEEEEEEEEEeCC-----cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccc
Confidence            4433 22366666431     1333333 33444788999999999999854  45799999887643221100011101


Q ss_pred             C----CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          262 D----DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       262 ~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      .    .....+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus       162 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             SSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence            1    23345899999999999999999999999888888888875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1.3e-19  Score=162.22  Aligned_cols=181  Identities=16%  Similarity=0.261  Sum_probs=118.5

Q ss_pred             CCCccccCCCeEEEEEEEeecCCC---ceEEEeCCEee-----------cC------CCceEEEEeecCcceEEEEEEEc
Q psy670          109 KKPTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVI-----------ED------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ..++.+.+|++++|.|.+.+.+.+   .|.|+|++...           ..      ..+.....  ........+|.|.
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~   88 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR--DGITAGKAALRIH   88 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEEC--TTGGGTEEEEEES
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEec--ccccCCeEEEEEe
Confidence            345778899999999999766554   69999976321           10      11122111  1222334589999


Q ss_pred             CCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEE
Q psy670          169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKL  247 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~  247 (540)
                      +++.+|+|.|+|.+.|..+.....+.+.+..         .+...+....+.+|+.+.|.|.+.+ .|.+.|+|++++..
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~  159 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEKALVELKVAA---------LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE  159 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEB---------CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             eCchHHCeeEEEEEECCCcEEEEEEEEeecc---------ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence            9999999999999999888777666665542         1222233455668999999999988 69999999997654


Q ss_pred             eeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          248 VKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +........... ..+.+ ..+.+.+++.+|.|.|+|.|.|..|....++.|.|.
T Consensus       160 ~~~~~~~~~~~~-~~g~~-~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          160 NIPTVEAPVVAD-GVGLY-AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             BCCCEECCCEEC-TTSCE-EEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             EcCCCceEEEEC-CCCcE-EEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            433322222222 22222 123344567789999999999999988888777764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.82  E-value=1.3e-19  Score=154.44  Aligned_cols=163  Identities=16%  Similarity=0.318  Sum_probs=122.8

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.....              .+.+.+++.+|+|.|+|.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~d~G~Y~C~   69 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQ   69 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc--------------ceEEEecccccCeEEEEE
Confidence            45555566666778999999999999876 678999999998865432              355678999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      +.+...  ...+.+.|..       ++.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+....        
T Consensus        70 ~~~~~~--s~~~~l~v~~-------~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------  131 (170)
T 3ry4_A           70 TGQTSL--SDPVHLTVLF-------EWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------  131 (170)
T ss_dssp             ETTSBC--CCCEEEEEEC-------CSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------
T ss_pred             EeCCCc--eEeEEEEEEC-------CceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------
Confidence            997533  3455666654       33444433 34677899999999995 45668999999998764211        


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNI  405 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  405 (540)
                      .+.    .|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       132 ~~~----~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          132 LDP----TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             SCC----EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCC----eEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            111    7999999999999999999999986 455566655

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.82  E-value=1.2e-19  Score=165.26  Aligned_cols=187  Identities=12%  Similarity=0.259  Sum_probs=125.3

Q ss_pred             CCceeecCCCCeEEEEEEecc---cCCCeEEEEeCCEEeeccCceE-------------------EEEecCCCe------
Q psy670          213 KPRIIPNESGTLIQMKCKCSA---KPRPEVKWFKADKLVKESSKIK-------------------IIVNEQDDT------  264 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~---~p~~~v~W~~~~~~l~~~~~~~-------------------~~~~~~~~~------  264 (540)
                      .+..+.+.+|+.+.|.|.+.+   .|.+.+.|++++........+.                   .......+.      
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   87 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   87 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence            445677889999999999987   7888999999874321000000                   000000000      


Q ss_pred             EEEEEEEeCCCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670          265 YEIICEITDPIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP  339 (540)
Q Consensus       265 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p  339 (540)
                      ....|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...+.+   +...+..+....+.+|+.+.|.|.+.+.|
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~---~~~~~~~~~~~~v~~g~~v~L~C~~~g~p  164 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS---NNVHVSTAEVVQVDEGNDITMTCPCTDCA  164 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCC---SCCEECCCSEEECCTTCCEEECCCEESCT
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCC---CeEEEecCceEEecCCCcEEEEEEecCCC
Confidence            01369999999999999999999976643     34566666553211   22223344566777899999999999999


Q ss_pred             CCeEEEEECCEEccCCCceEEE--------------------EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC---Cee
Q psy670          340 MPEIVWFHEGKELQQTDRISWN--------------------VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF---HGE  396 (540)
Q Consensus       340 ~~~i~W~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~---~g~  396 (540)
                      .|.+.|++++..+.........                    ....+.   ..|.|.+++.+|+|.|+|.|.|.   .|.
T Consensus       165 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~  241 (250)
T 2fbo_J          165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA---RNLVIRAAKITDAGRVWCELATGQGELDA  241 (250)
T ss_dssp             TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETT---TEEEECSCCGGGCEEEEEEEESSSSGGGE
T ss_pred             CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCc---cEEEEecCCcccCEEEEEEecCCccccCc
Confidence            9999999999877553311100                    000011   28999999999999999999994   445


Q ss_pred             eEEEEEEEE
Q psy670          397 LNANLTLNI  405 (540)
Q Consensus       397 ~~~~~~l~V  405 (540)
                      ...++.|.|
T Consensus       242 ~~~~~~l~V  250 (250)
T 2fbo_J          242 DRSSTILKV  250 (250)
T ss_dssp             EEEEEEEEC
T ss_pred             cceeEEEeC
Confidence            555555543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.82  E-value=4.1e-20  Score=164.01  Aligned_cols=175  Identities=21%  Similarity=0.355  Sum_probs=126.8

Q ss_pred             CccccCCCeEEEEEEEeecC----CCceEEEe----------------CCEeecC-----CCceEEEEeecCcceEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP----MPDIIWYQ----------------GTKVIED-----TGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p----~~~v~W~~----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~L  165 (540)
                      ...+.+|++++|.|.+.+.+    .+.+.|++                ++..+..     ..+..+....  ......+|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L   86 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND--VKSGDASI   86 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSC--GGGTBCCE
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccC--ccCCcccE
Confidence            45688999999999998776    45899998                3333321     2233322100  01112379


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeC
Q psy670          166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKA  244 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~  244 (540)
                      .|.+++.+|+|.|+|.+.+..+.....+.|.|..       +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+++
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-------KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-------CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEc-------CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence            9999999999999999999988888888899886       4443333344457789999999999 7899999999995


Q ss_pred             C--EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          245 D--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       245 ~--~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +  ..+.......    ...    ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       160 ~~~~~~~~~~~~~----~~~----~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          160 SDSQTMPTPWLAE----MTS----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             STTCCCCGGGGGG----TTS----SEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCCCccCccceec----cCC----CEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            4  3333221110    011    179999999999999999999999988777777765

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.82  E-value=1.2e-20  Score=167.49  Aligned_cols=178  Identities=20%  Similarity=0.342  Sum_probs=125.6

Q ss_pred             CceeecCCCCeEEEEEEecccC----CCeEEEEeC----------------CEEeec-----cCceEEEEecCCCeEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP----RPEVKWFKA----------------DKLVKE-----SSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----------------~~~l~~-----~~~~~~~~~~~~~~~~~~  268 (540)
                      +..+.+.+|+.+.|.|.+.+.+    .+.+.|+++                +..+..     ..+..+... ........
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~   85 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN-DVKSGDAS   85 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS-CGGGTBCC
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc-CccCCccc
Confidence            4466778999999999998866    468999983                332221     111111100 00111236


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFH  347 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~  347 (540)
                      |.|.+++.+|+|.|+|.+.+..+.....+.|.|...       |.+...+....+..|+.+.|.|.+ .+.|.+.+.|++
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~  158 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK-------PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQK  158 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-------CBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEE
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC-------CCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEE
Confidence            999999999999999999998887777788888663       222222222336789999999999 899999999999


Q ss_pred             CCE--EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          348 EGK--ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       348 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ++.  .+......    ...+.    .|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus       159 ~~~~~~~~~~~~~----~~~~~----~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          159 LSDSQTMPTPWLA----EMTSP----VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             CSTTCCCCGGGGG----GTTSS----EEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CCCCCccCcccee----ccCCC----EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            543  33322111    01122    899999999999999999999999998888888764

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.82  E-value=1.8e-19  Score=159.76  Aligned_cols=185  Identities=11%  Similarity=0.205  Sum_probs=127.6

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      +...+ ...+.+|+.++|.|.+.+.|.+.+.|++.  +....            ...++....    ......|.|.+++
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~   78 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN----SGNMATLTISKAQ   78 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe----cCCEEEEEECCCC
Confidence            34445 77788999999999999999999999982  22111            111222221    1123479999999


Q ss_pred             CCCcEEEEEEEEcCCC---CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCE
Q psy670          276 GPDSGTYRCNVKNEFG---ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGK  350 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~  350 (540)
                      .+|+|.|+|.+.+..+   .......|.|...+   ..+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|.
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  155 (213)
T 3mj8_L           79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQP---NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGT  155 (213)
T ss_dssp             GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             hhhCEEEEEEeccCCcceeEEcCceEEEEeCCC---CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCc
Confidence            9999999999999877   34455667776421   126666655544445589999999999985 44 4999999999


Q ss_pred             EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          351 ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       351 ~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      .+............++. ...+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          156 PITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             ccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            88653221111111111 12347999999999999999999999987766654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.82  E-value=7.4e-21  Score=168.21  Aligned_cols=180  Identities=18%  Similarity=0.299  Sum_probs=129.0

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..            ..+...  ..      ..|.|.++
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~------~~L~i~~~   75 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LP------TGITFKSV   75 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ET------TEEECSCC
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe--ec------cEEEEeeC
Confidence            44556667777888999999999999989999999997755311            111111  11      37999999


Q ss_pred             CCCCcEEEEEEEEcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEE
Q psy670          275 IGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKE  351 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~  351 (540)
                      +.+|+|.|+|.+.+..+.  ....+.+.|...       |.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus        76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~  148 (209)
T 1nbq_A           76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP-------PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV  148 (209)
T ss_dssp             CTTSCSEEEEEEEETTSSCEECCEEECCEEBC-------CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC
T ss_pred             CHHHCcEEEEEEecCCCCccceEEEEEEEecC-------CcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCee
Confidence            999999999999998653  344555666553       222222333457889999999997 8899999999999988


Q ss_pred             ccCCCce-------EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE--EEEEE
Q psy670          352 LQQTDRI-------SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN--LTLNI  405 (540)
Q Consensus       352 ~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V  405 (540)
                      +......       ........    ..|.|.+++.+|+|.|+|.|.|..|....+  +.|.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          149 MPTNPKSTRAFSNSSYVLNPTT----GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCSCSSSSSSCTTCCCCCCTTT----CCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             CCCccccceeeeccceEEcCCc----ceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            7654321       00000111    279999999999999999999999987444  44444

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.82  E-value=5.7e-19  Score=155.90  Aligned_cols=172  Identities=15%  Similarity=0.276  Sum_probs=126.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCC-------------------CceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT-------------------GRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      +..+.+|++++|.|...+.+.+.+.|++++......                   .+..+.     .+   .+|.|.+++
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~---~~L~i~~v~   79 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SN---GSLLFQMIT   79 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TT---SCEEECSCC
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cC---CeEEEcccc
Confidence            356789999999999877888899999975432211                   111111     01   169999999


Q ss_pred             CCCCeEEEEEEEcCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeec
Q psy670          172 KDDGGNYRCNACNSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKE  250 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~  250 (540)
                      .+|+|.|+|.+.+.. +.....+.|.|.....    .|.+...+..  +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~  152 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVT----QPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL  152 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCCC----CCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCCC----CCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence            999999999999985 5567777788875322    3455444333  78899999999999866 79999999999876


Q ss_pred             cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee-eeEEEEEee
Q psy670          251 SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN-ANLNLNIEA  303 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~  303 (540)
                      ..+......  .    ..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|..
T Consensus       153 ~~~~~~~~~--~----~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~  200 (208)
T 3r4d_A          153 TERMTLSQN--N----SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF  200 (208)
T ss_dssp             CSSEEEETT--T----TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred             CCCeEEcCC--C----CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence            665543321  1    2799999999999999999999988753 345555543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.82  E-value=6.2e-20  Score=157.37  Aligned_cols=167  Identities=16%  Similarity=0.221  Sum_probs=124.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...+....+.+|+.++|.|.+.+.+.+ .+.|++++..+.....              .|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~--------------~L~i~~v~~~d~G~Y~C~   69 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------------SLNIVNAKFEDSGEYKCQ   69 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS--------------EEEECSCCGGGCEEEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCce--------------EEEEeccceecCEEEEEE
Confidence            5667777777789999999999999888775 6999999998865322              899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670          390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK  469 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g  469 (540)
                      +.|..+.  ..+.|.|..                                              ++.+...+ ...+.+|
T Consensus        70 ~~~~~~s--~~~~l~V~~----------------------------------------------~~~~~~~~-~~~~~~g  100 (176)
T 1f2q_A           70 HQQVNES--EPVYLEVFS----------------------------------------------DWLLLQAS-AEVVMEG  100 (176)
T ss_dssp             CTTSSCC--CCEEEEEEC----------------------------------------------SSEEEEES-CSEEETT
T ss_pred             cCCcccc--ccEEEEEeC----------------------------------------------cceeecCC-cceeeCC
Confidence            9986653  345555553                                              33333322 2467799


Q ss_pred             CeEEEEEEEe-eecCCceEEEecCeecCCCC-eEEE---EEEecCCeEEEEEEeeeeeeeeCCeeEEEEEeccccC
Q psy670          470 KTVVIECKVM-SMYEPSVTWMKEKNTVKEDN-KHVV---HIEQVKDVSMNFELWLGIVEKRGPSIKIIYYIAPFYK  540 (540)
Q Consensus       470 ~~~~l~C~v~-g~p~~~v~W~~~~~~l~~~~-~~~~---~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~  540 (540)
                      +.++|.|.+. +.|.+.++|+|+|..+.... ...+   .+...|.|.|+|.+.+...........+.+.-+|+.|
T Consensus       101 ~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~K  176 (176)
T 1f2q_A          101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK  176 (176)
T ss_dssp             SCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC--
T ss_pred             CCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCCCC
Confidence            9999999995 56677999999999885331 2223   4566789999999998766666667888888888765

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.81  E-value=2.8e-19  Score=153.02  Aligned_cols=160  Identities=14%  Similarity=0.220  Sum_probs=119.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+++|..+.....              .|.|.+++.+|+|.|+|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~~--------------~L~i~~~~~~d~G~Y~C~   72 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSGEYRCQ   72 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS--------------EEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCce--------------EEEEeCCCcccCEEEEEE
Confidence            67777777777899999999999999988776 799999988764322              799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCC
Q psy670          390 IKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKK  469 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g  469 (540)
                      +.|..+  +..+.|.|..                                              +|.+...+ ...+.+|
T Consensus        73 ~~n~~~--s~~~~l~V~~----------------------------------------------~~~~~~~~-~~~~~~g  103 (175)
T 1fnl_A           73 TNLSTL--SDPVQLEVHI----------------------------------------------GWLLLQAP-RWVFKEE  103 (175)
T ss_dssp             CSSSCC--CCCEEEEEEC----------------------------------------------SSEEEECS-CSEEETT
T ss_pred             eeCCcc--cccEEEEEeC----------------------------------------------CCceeeCC-CceecCC
Confidence            998654  4455666654                                              33333333 2457789


Q ss_pred             CeEEEEEEEeeecCC-ceEEEecCeecCCC----CeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEEE
Q psy670          470 KTVVIECKVMSMYEP-SVTWMKEKNTVKED----NKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKIIY  533 (540)
Q Consensus       470 ~~~~l~C~v~g~p~~-~v~W~~~~~~l~~~----~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~~  533 (540)
                      +.++|.|.+.+.|++ .++|+|+|..+...    ......+...|.|.|+|.+.+...........+.+
T Consensus       104 ~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          104 DPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             CCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence            999999999987765 99999999987522    12222456678999999999865555544444443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.81  E-value=1.4e-19  Score=156.41  Aligned_cols=164  Identities=15%  Similarity=0.221  Sum_probs=119.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEe--ecCC------------CceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKV--IEDT------------GRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+.+.+|++++|.|.+.+.|.+.+.|++++..  +...            .+.......  ......+|.|.+++.+|+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~i~~v~~~D~G   81 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL--WDQGNFPLIIKNLKIEDSD   81 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGG--GGGTBCCEEECSCCGGGCE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCcccccccc--ccCCeEEEEEecCCHHHCE
Confidence            35678999999999998888899999998753  2111            111111000  0111236999999999999


Q ss_pred             EEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE
Q psy670          177 NYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI  256 (540)
Q Consensus       177 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~  256 (540)
                      .|+|.+.+..+    .+.|.|..          +.. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....    
T Consensus        82 ~Y~C~~~~~~~----~~~l~V~~----------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----  142 (184)
T 2ny1_B           82 TYICEVEDQKE----EVQLLVFG----------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----  142 (184)
T ss_dssp             EEEEEETTEEE----EEEEEEEE----------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEES----
T ss_pred             EEEEEEEcCCC----cEEEEEEE----------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCc----
Confidence            99999987654    34455542          111 223356789999999999999999999999886552111    


Q ss_pred             EEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeecc
Q psy670          257 IVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       257 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~  305 (540)
                                ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|...+
T Consensus       143 ----------~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          143 ----------KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             ----------SEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ----------eEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence                      279999999999999999999988888888888887643

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.81  E-value=2.4e-19  Score=160.59  Aligned_cols=181  Identities=17%  Similarity=0.174  Sum_probs=115.2

Q ss_pred             ceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEe-----------ecc------CceEEEEecCCCeEEEEEEEeCC
Q psy670          215 RIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLV-----------KES------SKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l-----------~~~------~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ..+.+.+|++++|.|.+.+.+.+   .|.|++++...           ...      .+... ...........|.|.++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~-~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI-LRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEE-ECTTGGGTEEEEEESSC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEE-ecccccCCeEEEEEeeC
Confidence            34667789999999999775543   69999976421           110      01111 11111122458999999


Q ss_pred             CCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEcc
Q psy670          275 IGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQ  353 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~  353 (540)
                      +.+|+|.|+|.|.|..+.....+.+.+....         ...+....+.+|+.+.|.|.+.+ .|.|.|.|++++..+.
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~  161 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVAALG---------SDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI  161 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCC---------CCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeeccce---------ecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence            9999999999999987766555444443211         11223455778999999999998 5999999999755443


Q ss_pred             CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          354 QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .........  ++......+.+..++.+|+|.|+|.|.|..|...+++.|.|.+
T Consensus       162 ~~~~~~~~~--~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          162 PTVEAPVVA--DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             CCEECCCEE--CTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             CCCceEEEE--CCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            322222111  2222111333444567899999999999999999988888865

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=160.01  Aligned_cols=186  Identities=13%  Similarity=0.217  Sum_probs=126.6

Q ss_pred             CCceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEeeccCce------EEEEe-----------cCCCeEEEEEEEe
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLVKESSKI------KIIVN-----------EQDDTYEIICEIT  272 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l~~~~~~------~~~~~-----------~~~~~~~~~l~i~  272 (540)
                      .+..+.+..|++++|.|.+.+.|.+   .|.|++++..+......      .....           ........+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            3456778899999999999987765   48999977543221100      00000           0011112369999


Q ss_pred             CCCCCCcEEEEEEEEcCCCCeeeeE-EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEE
Q psy670          273 DPIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKE  351 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~  351 (540)
                      +++.+|+|.|.|.+.+..+...... .+.+...      ++..........+..|+.+.+.|.+.+.|.|.|.|++++..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~  158 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVP------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG  158 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeee------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence            9999999999999988665443333 3333321      23333344556677899999999999999999999999876


Q ss_pred             ccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          352 LQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +.......   ........+.|.|..+..+|+|.|+|.|.|..|.....+++.|.+
T Consensus       159 ~~~~~~~~---~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          159 TTSSRSFK---HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEEEEE---CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             cccCceEe---cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            65432211   111222345899999999999999999999999877777666654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=156.72  Aligned_cols=163  Identities=15%  Similarity=0.155  Sum_probs=117.0

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~  190 (540)
                      .+.+|++++|.|.+.+ +.+.+.|+|++..+.......      ........|.|.+++.+|+|.|+|.+.|..+.  .+
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP------LEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS   87 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC------CSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc------ccCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence            6789999999999977 778999999988764321100      01112238999999999999999999998873  35


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|....    .+|.+...+.. .+.+|+.++|.|.+.+. ++.+.|++++..+..........   .......|.
T Consensus        88 ~~~~l~V~~~~----~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~---~~~~~~~L~  158 (196)
T 3p2t_A           88 DPLELVMTGAY----SKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG---AQQHQAEFP  158 (196)
T ss_dssp             CCEEEEEECSS----CCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE---EEEEEEEEE
T ss_pred             ccEEEEecCCC----CCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc---ccCcceEEE
Confidence            56777776422    14555444433 56789999999999874 45899999998765433221110   111234799


Q ss_pred             EeCCCCCCcEEEEEEEEcCCC
Q psy670          271 ITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      |.+++.+|+|.|+|.|.|..+
T Consensus       159 i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          159 MSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             ECSCCGGGCEEEEEEEECGGG
T ss_pred             eCCCcccCCCeEEEEEEcCCC
Confidence            999999999999999999765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.81  E-value=7e-20  Score=156.61  Aligned_cols=135  Identities=19%  Similarity=0.309  Sum_probs=101.1

Q ss_pred             ceeeeeecCeecc----------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcce--eeeEEEEEe
Q psy670           24 FQMNMYHKGSLLK----------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEG--SSTVNLNFS   91 (540)
Q Consensus        24 ~~~~W~k~~~~l~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~--~~~~~l~v~   91 (540)
                      +.|.|+|++..+.          .+.++.+  ..++       +|.|.+++.+|+|.|+|.+.|..|..  +..+.|.|.
T Consensus        28 ~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g-------sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~   98 (176)
T 1hng_A           28 DEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG-------DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   98 (176)
T ss_dssp             EEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS-------CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             ccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC-------cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEe
Confidence            7999999997552          2344443  3333       69999999999999999999998876  566777776


Q ss_pred             ecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670           92 EEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus        92 ~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ..+.              .+.+...+..+.|.|.+.|.|.+.+.|+++|..+....+                +.|.++.
T Consensus        99 ~~~~--------------~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----------------~~i~~~~  148 (176)
T 1hng_A           99 EMVS--------------KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTMSYQW  148 (176)
T ss_dssp             CCCC--------------CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS----------------SEEEEEC
T ss_pred             CCCC--------------CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc----------------EEEEEEE
Confidence            5321              122233455699999999999999999999988754432                2333567


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEE
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNF  197 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v  197 (540)
                      .+|+|.|+|.|.|..|.......|.+
T Consensus       149 ~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          149 TNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             SCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             ccCCeEEEEEEEecCCCceecccccC
Confidence            89999999999999998877766544

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.81  E-value=2.2e-19  Score=155.02  Aligned_cols=159  Identities=15%  Similarity=0.213  Sum_probs=117.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+.. .+.+|++++|.|.+.+ +.+.+.|++++.....          ..    ..|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~----------~~----~~L~i~~v~~~D~G~Y~C~a   71 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQ----------DQ----AVLFIPAMKRSLAGRYRCSY   71 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCEE----------SS----SEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccccC----------cc----cEEEECcCChhhCceEEEEE
Confidence            5666655554 6789999999999987 7789999999865110          11    27999999999999999999


Q ss_pred             EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .|..|.  .+..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+.......     
T Consensus        72 ~n~~g~~~~s~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~-----  140 (184)
T 2gi7_A           72 QNGSLWSLPSDQLELVATGVF----AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPER-----  140 (184)
T ss_dssp             EETTEEBCCCCCEEEEEESSS----CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCE-----
T ss_pred             EcCCCccCCCCCEEEEecCcC----CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCC-----
Confidence            997653  3445667665421    245565555 34567899999999986554 6999999998776532211     


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                         .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       141 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          141 ---WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             ---EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ---CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence               1122688999999999999999999754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.81  E-value=2.4e-19  Score=158.36  Aligned_cols=180  Identities=14%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEE-------EE-ecCCCeE----EEEEEEeCCCCCCcEEEE
Q psy670          216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKI-------IV-NEQDDTY----EIICEITDPIGPDSGTYR  283 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~-------~~-~~~~~~~----~~~l~i~~~~~~d~g~y~  283 (540)
                      ...+.+|+.+.|.|...+.+.+.+.|++++...........       .. ....+..    ...|.|.+++.+|+|.|+
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~   87 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence            34567899999999988888889999987543221110000       00 0000000    026999999999999999


Q ss_pred             EEEEcCC-CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670          284 CNVKNEF-GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV  362 (540)
Q Consensus       284 C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  362 (540)
                      |.+.+.. +.....+.|.|...+    ..|.+...+..  +.+|+.+.|.|.+.+.| +.+.|+++|..+....+...  
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~----~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~--  158 (208)
T 3r4d_A           88 LDMTDENYRRTQATVRFHVHQPV----TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL--  158 (208)
T ss_dssp             EEEECSSCEEEEEEEEEEEECCC----CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEE--
T ss_pred             EEEEcccCceeEEEEEEEeccCC----CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEE--
Confidence            9999985 445556666665432    14555554443  88899999999998866 79999999999987665543  


Q ss_pred             EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEEEE
Q psy670          363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIEMV  408 (540)
Q Consensus       363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  408 (540)
                      ..++.    +|.|.++..+|+|.|+|.|.|..|.. +..++|.|..+
T Consensus       159 ~~~~~----~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~  201 (208)
T 3r4d_A          159 SQNNS----ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFD  201 (208)
T ss_dssp             ETTTT----EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC--
T ss_pred             cCCCC----EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeC
Confidence            22222    79999999999999999999999875 44666666553

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=158.11  Aligned_cols=164  Identities=13%  Similarity=0.126  Sum_probs=107.3

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~  190 (540)
                      .+.+|++++|.|.+.+.|. .+.|+|++..+......    ..  .......|.|.+++.+|+|.|+|.+.|..+..  +
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~----~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN----PL--EPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS   87 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC----CC--SSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCC
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc----cc--CCccccEEEeccCChhHCeEEEEEEeCCCCcCCcC
Confidence            6789999999999977665 99999999866432110    00  01112389999999999999999999887643  4


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|.....    +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|++++..+........  ....+.....|.
T Consensus        88 ~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~--~~~~~~~~~~L~  159 (196)
T 2d3v_A           88 DPLELVVTGFYN----KPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ--LTPSGQFQALFP  159 (196)
T ss_dssp             CCEEEEEECSSC----CCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE--ECTTSCEEEEEE
T ss_pred             ccEEEEecCCCC----CCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc--cccCCCceeEEE
Confidence            456677764221    45554433 34678899999999999988 89999999987643211100  111223345899


Q ss_pred             EeCCCCCCcEEEEEEEEcCCC
Q psy670          271 ITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      |.+++.+|+|.|+|.|.|..+
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTE
T ss_pred             eeecCcccCeeEEEEEEccCC
Confidence            999999999999999998754

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.81  E-value=1.6e-20  Score=166.06  Aligned_cols=170  Identities=16%  Similarity=0.274  Sum_probs=122.3

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ....+.+|+++.|.|.+.+.|.+.+.|++++..+            ....+.....         ..|.|.+++.+|+|.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---------~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A           12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---------TGITFKSVTREDTGT   82 (209)
T ss_dssp             SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET---------TEEECSCCCTTSCSE
T ss_pred             CceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec---------cEEEEeeCCHHHCcE
Confidence            3456789999999999998899999999976542            1122222221         389999999999999


Q ss_pred             EEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCce
Q psy670          178 YRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKI  254 (540)
Q Consensus       178 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~  254 (540)
                      |+|.+.+..+  .....+.|.|..       +|.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+......
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~-------~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~  155 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLV-------PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS  155 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEB-------CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSS
T ss_pred             EEEEEecCCCCccceEEEEEEEec-------CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcccc
Confidence            9999998865  345566677765       3433333344557789999999997 88999999999999887654321


Q ss_pred             EEEEec---CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          255 KIIVNE---QDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       255 ~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ......   ........|.|.+++.+|.|.|+|.|.|..|....
T Consensus       156 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  199 (209)
T 1nbq_A          156 TRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT  199 (209)
T ss_dssp             SSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEE
T ss_pred             ceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccc
Confidence            000000   00001137999999999999999999999988733

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=7e-19  Score=153.94  Aligned_cols=164  Identities=16%  Similarity=0.197  Sum_probs=110.6

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC-ce--e
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI-GE--S  189 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~--~  189 (540)
                      .+.+|++++|.|.+.+.|. .+.|+|+|..+........   .....   ..|.|.+++.+|+|.|+|.+.|.. +.  .
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~---~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ---ELVKK---GQFPIPSITWEHTGRYRCYYGSDTAGRSES   87 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH---HHHTT---TEEEESSCCGGGCEEEEEEEEETTTEECCC
T ss_pred             cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc---cCCcc---cEEEECCCCHHHCeEEEEEEECCCCCcccC
Confidence            6789999999999987765 7999999887632111000   00011   179999999999999999999987 52  3


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      +..+.|.|.....    .|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..+..........  ..+.....|
T Consensus        88 s~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~--~~~~~~~~L  159 (198)
T 1ugn_A           88 SDPLELVVTGAYI----KPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH--ARGSSRAIF  159 (198)
T ss_dssp             CCCEEEEEECSSC----CCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC--------CCEEEE
T ss_pred             CccEEEEEccccc----CCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc--CCCcceeEE
Confidence            5567777765221    34444333 2456789999999999888 77999999998764322110000  111123479


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCC
Q psy670          270 EITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .|.+++.+|+|.|+|.|.|..+
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTS
T ss_pred             EecccCcccCeEEEEEEEeCCC
Confidence            9999999999999999999765

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.80  E-value=1.3e-19  Score=156.62  Aligned_cols=162  Identities=14%  Similarity=0.237  Sum_probs=119.6

Q ss_pred             eeecCCCCeEEEEEEecccCCCeEEEEeCCEE--eeccC------------ceEEEEecCCCeEEEEEEEeCCCCCCcEE
Q psy670          216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKL--VKESS------------KIKIIVNEQDDTYEIICEITDPIGPDSGT  281 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--l~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  281 (540)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++..  +....            +...... ........|.|.+++.+|+|.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS-LWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGG-GGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccc-cccCCeEEEEEecCCHHHCEE
Confidence            34567899999999999889999999998863  21111            1111000 000112359999999999999


Q ss_pred             EEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670          282 YRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN  361 (540)
Q Consensus       282 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  361 (540)
                      |+|.+.+..+    .+.+.|....           .+....+.+|+.++|.|.+.+.|.+.+.|++++..+..       
T Consensus        83 Y~C~~~~~~~----~~~l~V~~~~-----------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-------  140 (184)
T 2ny1_B           83 YICEVEDQKE----EVQLLVFGLT-----------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------  140 (184)
T ss_dssp             EEEEETTEEE----EEEEEEEEEE-----------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-------
T ss_pred             EEEEEEcCCC----cEEEEEEEec-----------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-------
Confidence            9999988643    4455554311           12334678999999999999999999999998765411       


Q ss_pred             EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                         ...    .|.|.+++.+|+|.|+|.|.|..+....++.|.|..
T Consensus       141 ---~~~----~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          141 ---GGK----TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             ---ESS----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ---Cce----EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence               112    899999999999999999999999999999998876

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.80  E-value=6.9e-19  Score=157.11  Aligned_cols=183  Identities=16%  Similarity=0.249  Sum_probs=120.0

Q ss_pred             CCceeecCCCCeEEEEEEecccCC-----CeEEEEeCCEEeecc---------------CceEEEEecCCCeEEEEEEEe
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPR-----PEVKWFKADKLVKES---------------SKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~-----~~v~W~~~~~~l~~~---------------~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      .+..+.+.+|+++.|.|.+.+.|.     ..+.|++++..+...               .+..+... ........|.|.
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~-~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD-QLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHH-HHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccc-cccCCEEEEEEc
Confidence            345567778999999999977653     489999987443211               11111000 001123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC-CEE
Q psy670          273 DPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE-GKE  351 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~-~~~  351 (540)
                      +++.+|+|.|+|.+.+ .+.....+.|.|...+.    .+...   ....+..|+.+.|.|.+.|.|.|.+.|+++ +..
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~----~~~~~---~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN----KINQR---ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC----CCEEE---EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECCCC----CCCce---eeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            9999999999999998 56566667777764221    12111   112466899999999999999999999998 555


Q ss_pred             ccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          352 LQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       352 ~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +............++.. ..+.|.+   ..+|.|.|+|.|.|..|....++.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            54322211111111111 1123344   45789999999999999999999888875

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.80  E-value=5.3e-19  Score=156.71  Aligned_cols=181  Identities=12%  Similarity=0.070  Sum_probs=126.4

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE--EEEEeCCCCCCcEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI--ICEITDPIGPDSGTYRC  284 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C  284 (540)
                      +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... .    .......  .|.|.+++.+|+|.|+|
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~----~~~~~~~~~~L~I~~v~~~D~G~Y~C   81 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-R----LKFWNETDPEFVIDHMDANKAGRYQC   81 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-E----CC----CCCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-c----CCCCcceeeEEEEcccccccCEEEEE
Confidence            566666565 46788999999999987 67799999988765432211 0    0001112  69999999999999999


Q ss_pred             EEEcCCCCe--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE
Q psy670          285 NVKNEFGES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV  362 (540)
Q Consensus       285 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~  362 (540)
                      .+.|..+..  +..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+...  ..   
T Consensus        82 ~a~n~~~~~~~s~~~~l~V~~~~----~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~---  151 (218)
T 1uct_A           82 QYRIGHYRFRYSDTLELVVTGLY----GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ---  151 (218)
T ss_dssp             EEEETTTEEEECCCEEEEEECSS----CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE---
T ss_pred             EEEcCCCceeecCCEEEEEcCcc----cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--cc---
Confidence            999976532  344666665421    255665555 346789999999997777788899999999876541  11   


Q ss_pred             EecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEEEE
Q psy670          363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNIEM  407 (540)
Q Consensus       363 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~  407 (540)
                      ....   ...|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|..
T Consensus       152 ~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          152 SGEH---PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             ECSS---SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             CCCc---cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            1111   12899999999999999999998632     234556777765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=153.19  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=111.5

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~  190 (540)
                      .+.+|++++|.|.+.+ +.+.+.|+|+|....       .     ..   ..|.|.+++.+|+|.|+|.+.|..+.  .+
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~-------~-----~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   81 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY-------Q-----DQ---AVLFIPAMKRSLAGRYRCSYQNGSLWSLPS   81 (184)
T ss_dssp             EEETTCCEEEEEECST-TCSEEEEEETTTCCE-------E-----SS---SEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             cccCCCcEEEEEeCCC-CCCEEEEEECCcccc-------C-----cc---cEEEECcCChhhCceEEEEEEcCCCccCCC
Confidence            6789999999999876 778999999886510       0     01   18999999999999999999998764  24


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+.+ +.+.|+++|..+......        ......|.
T Consensus        82 ~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~--------~~~~~~L~  147 (184)
T 2gi7_A           82 DQLELVATGVF----AKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE--------RWYRASFP  147 (184)
T ss_dssp             CCEEEEEESSS----CCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCC--------EEEEESSS
T ss_pred             CCEEEEecCcC----CCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecC--------CCceEEEE
Confidence            45667775421    145555444 45677899999999987654 599999999876542211        11224688


Q ss_pred             EeCCCCCCcEEEEEEEEcCCC
Q psy670          271 ITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      |.+++.+|+|.|+|.+.|..+
T Consensus       148 i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          148 IITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEETTCCSEEEEEEEECTTS
T ss_pred             EccCCccCCeEEEEEEEeCCC
Confidence            999999999999999999754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.80  E-value=1.3e-18  Score=155.24  Aligned_cols=181  Identities=17%  Similarity=0.285  Sum_probs=119.7

Q ss_pred             CCCccccCCCeEEEEEEEeecCC-----CceEEEeCCEeecC---------------CCceEEEEeecCcceEEEEEEEc
Q psy670          109 KKPTIHQDGDLLVMECVLEASPM-----PDIIWYQGTKVIED---------------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~-----~~v~W~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ..+..+.+|+++.|.|.+.+.|.     ..+.|+|++..+..               ..+..+.....  .....+|.|.
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~--~~~~~~L~I~   85 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL--SLGNAALQIT   85 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHH--TTTEEEEEES
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccc--cCCEEEEEEc
Confidence            34567889999999999877663     37999997643310               12222211110  1123489999


Q ss_pred             CCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC-CEE
Q psy670          169 NPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-DKL  247 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~  247 (540)
                      +++.+|+|.|+|.+.+ .+.....+.|.|...       +..........+.+|+.+.|.|.+.++|.+.+.|+++ +..
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~-------~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAP-------YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBC-------CCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECC-------CCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            9999999999999998 566677788888742       2211111112567899999999999999999999998 555


Q ss_pred             eeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          248 VKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       248 l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      +......... ....+..  .+.+.+   ...|.|.|+|.|.|..|.....+.+.|..
T Consensus       158 ~~~~~~~~~~-~~~~~~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~  211 (222)
T 3sbw_C          158 LSGKTTTTNS-KREEKLFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPE  211 (222)
T ss_dssp             ECCEEEEEEC-C----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             ecCccceEEE-cCCCCCEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence            4332221111 1111211  123333   45789999999999999988888888764

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=1.4e-18  Score=150.43  Aligned_cols=178  Identities=14%  Similarity=0.178  Sum_probs=122.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .|.+...+.. .+.+|++++|.|.+.+. ...+.|+|++..+.....     ..........|.|.+++.+|+|.|+|.+
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   76 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY   76 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccc-----ccCCCcceeEEEeCcCCcccCeEEEEEe
Confidence            5566555555 67889999999999753 468999999987652110     0011223357999999999999999999


Q ss_pred             EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .+..+.  .+..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+++|..+...    .  ..
T Consensus        77 ~~~~~~~~~s~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~----~--~~  144 (188)
T 1oll_A           77 RVGELWSEPSNLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ----R--GY  144 (188)
T ss_dssp             EETTEECCCCCCEEEEEESCS----CCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE----E--EE
T ss_pred             cCCCCCCCCCCceEEEecccC----CCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc----c--cC
Confidence            886442  2455667765421    145565544 345789999999999865 45689999998765431    1  11


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-ee--eEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-GE--LNANLTLNI  405 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~--~~~~~~l~V  405 (540)
                      ..  ....|.|.+++.+|+|.|+|.|.|.. ..  .+..+.|.|
T Consensus       145 ~~--~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          145 GK--VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             CS--SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             CC--ceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            11  12389999999999999999999865 22  234455554

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.80  E-value=7.4e-19  Score=160.05  Aligned_cols=173  Identities=17%  Similarity=0.330  Sum_probs=120.4

Q ss_pred             CCccccCCCeEEEEEEEee---cCCCceEEEeCCEeec------------------------------CCCceEEEEeec
Q psy670          110 KPTIHQDGDLLVMECVLEA---SPMPDIIWYQGTKVIE------------------------------DTGRIKMSKKSI  156 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~~~~~------------------------------~~~~~~~~~~~~  156 (540)
                      .+..+.+|++++|.|.+.+   .|.+.+.|+|++....                              ...+..+..   
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---   86 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN---   86 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC---
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc---
Confidence            3567889999999999987   7888999999864321                              001111100   


Q ss_pred             CcceEEEEEEEcCCCCCCCeEEEEEEEcCCce-----eEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEE
Q psy670          157 GKDTYLLRLEINNPTKDDGGNYRCNACNSIGE-----SNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCK  230 (540)
Q Consensus       157 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~  230 (540)
                         ....+|.|.+++.+|+|.|+|.+.+..+.     ....+.|.|...+.    ++.+ ...+....+.+|+.+.|.|.
T Consensus        87 ---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~----~~~~~~~~~~~~~v~~g~~v~L~C~  159 (250)
T 2fbo_J           87 ---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP----SNNVHVSTAEVVQVDEGNDITMTCP  159 (250)
T ss_dssp             ---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSC----CSCCEECCCSEEECCTTCCEEECCC
T ss_pred             ---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCC----CCeEEEecCceEEecCCCcEEEEEE
Confidence               01137999999999999999999987664     25577888875322    2222 23455677888999999999


Q ss_pred             ecccCCCeEEEEeCCEEeeccCceEEEE-------------ec-CCCe---EEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          231 CSAKPRPEVKWFKADKLVKESSKIKIIV-------------NE-QDDT---YEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       231 ~~~~p~~~v~W~~~~~~l~~~~~~~~~~-------------~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +.+.|.+.+.|++++..+..........             .. ....   ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       160 ~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          160 CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             EESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             ecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            9999999999999988775432111000             00 0000   0037999999999999999999996654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=155.15  Aligned_cols=182  Identities=12%  Similarity=0.171  Sum_probs=125.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecCCC------------------ceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIEDTG------------------RIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .+.+.+|++++|.|.+.+.|.+   .|.|+|++..+....                  +.....  ........+|.|.+
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~   85 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPP--PPRNPLDGSVLLRN   85 (218)
T ss_dssp             EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCS--SCCCTTBCCEEESS
T ss_pred             eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEec--ccccCCeEEEEEee
Confidence            4567899999999999887766   489999765432111                  111100  01111123799999


Q ss_pred             CCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEe
Q psy670          170 PTKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV  248 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l  248 (540)
                      ++.+|+|.|.|.+.+..+.. .....+.+...      ++..........+..|+.+.+.|.+.+.|.+.|.|++++..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~  159 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVP------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGT  159 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeee------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCccc
Confidence            99999999999998766544 33333433321      222233344566778999999999999999999999998876


Q ss_pred             eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      ......   .........+.|.|.++..+|.|.|+|.|.|..|.....+.+.|.+
T Consensus       160 ~~~~~~---~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          160 TSSRSF---KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEEE---ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ccCceE---ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            543322   1122333456899999999999999999999998877776666654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.79  E-value=1.6e-19  Score=154.35  Aligned_cols=154  Identities=14%  Similarity=0.273  Sum_probs=111.5

Q ss_pred             ccccCCCeEEEEEEEee--cCCCceEEEeCCEeec----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670          112 TIHQDGDLLVMECVLEA--SPMPDIIWYQGTKVIE----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR  179 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~--~p~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  179 (540)
                      +.+.+|++++|.|...+  .+.+.|.|+|++..+.          ...++.+.     .+.   +|.|.+++.+|+|.|+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~-----~~g---sL~I~~v~~~D~G~Y~   77 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-----ANG---DLKIKNLTRDDSGTYN   77 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC-----TTS---CEEESSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC-----CCC---cEEEcccccccCEEEE
Confidence            35678999999994322  4566899999987542          22333331     111   5999999999999999


Q ss_pred             EEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEE
Q psy670          180 CNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKII  257 (540)
Q Consensus       180 C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~  257 (540)
                      |.+.|..|..  ...+.|.|.....    .|.+.        ..+..+.|.|.+.+.|.+.+.|++++..+.....    
T Consensus        78 C~~~n~~g~~~~~~~~~l~V~~~~~----~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----  141 (176)
T 1hng_A           78 VTVYSTNGTRILNKALDLRILEMVS----KPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----  141 (176)
T ss_dssp             EEEEETTCCEEEEEEEEEEEECCCC----CCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS----
T ss_pred             EEEEeCCCCEEEEEEEEEEEeCCCC----CCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc----
Confidence            9999988876  6667777775221    23322        1244589999999999999999999988765443    


Q ss_pred             EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670          258 VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN  300 (540)
Q Consensus       258 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  300 (540)
                                 +.|.++..+|+|.|+|.|.|..|.......|.
T Consensus       142 -----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          142 -----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             -----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             -----------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence                       23346668899999999999998776655443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=2.2e-19  Score=155.21  Aligned_cols=151  Identities=13%  Similarity=0.296  Sum_probs=109.0

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC-CCCCCCeEEEEEEEcCCceeEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN-PTKDDGGNYRCNACNSIGESNA  191 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~~~~~~~  191 (540)
                      +..+|+++.|.|.+.+ + +.+.|+|+|..+......              +|.|.+ ++.+|+|.|+|.+.|..|....
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~~~--------------~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCCCC--------------EEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            3468999999999976 3 359999999988654110              799999 9999999999999998887555


Q ss_pred             EEEEEEecCcCCC-----------CCCCeeccCC-------ceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc
Q psy670          192 NIALNFQGGENGA-----------GFAPSFIEKP-------RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK  253 (540)
Q Consensus       192 ~~~l~v~~~~~~~-----------~~~p~~~~~~-------~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~  253 (540)
                      .+.+.|.......           ..++.+....       ....+.+|+.+.|.|.+   |.+.+.|+++|..+.....
T Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~  150 (186)
T 1jbj_A           74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA  150 (186)
T ss_dssp             EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC
T ss_pred             EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC
Confidence            5555554322110           0011111000       01234589999999998   7889999999998864322


Q ss_pred             eEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          254 IKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       254 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                             .    ...|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 -------~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 -------T----KNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             -------C----SSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             -------C----cceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                   1    1268899999999999999999987654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=4.2e-19  Score=153.41  Aligned_cols=149  Identities=17%  Similarity=0.328  Sum_probs=108.9

Q ss_pred             CCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeC-CCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD-PIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       220 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                      ..|+.+.|.|.+.+ +. .+.|+++|..+.....             .+|.|.+ ++.+|+|.|+|.|.|..|.....+.
T Consensus        12 ~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~-------------~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   76 (186)
T 1jbj_A           12 ISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHD-------------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK   76 (186)
T ss_dssp             EETTEEEEECSSCC-CT-TCEEEETTEEECSCCC-------------SEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred             eCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCC-------------CEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence            46999999999987 43 4999999998865421             1699999 9999999999999999887555555


Q ss_pred             EEEeeccCCCCC-----------CCeEE----eCCce---EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEE
Q psy670          299 LNIEAEAEPEGD-----------PPTFI----EKPKI---RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW  360 (540)
Q Consensus       299 l~v~~~~~~~~~-----------~p~~~----~~~~~---~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~  360 (540)
                      +.|.....+...           ++.+.    .....   ..+.+|+.+.|.|.+   |.|.|.|+++|..+.....   
T Consensus        77 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---  150 (186)
T 1jbj_A           77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---  150 (186)
T ss_dssp             CCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---
T ss_pred             EEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---
Confidence            554433222110           00000    00001   123489999999988   8899999999999864332   


Q ss_pred             EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                          .+.    .|.|.++..+|+|.|+|.|.|..|..
T Consensus       151 ----~~~----~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 ----TKN----TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             ----CSS----CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ----Ccc----eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence                111    79999999999999999999998866

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.79  E-value=1.1e-18  Score=148.71  Aligned_cols=153  Identities=19%  Similarity=0.304  Sum_probs=114.7

Q ss_pred             ccccCCCeEEEEEEEeecC-CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          112 TIHQDGDLLVMECVLEASP-MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ..+.+|+++.|.|.+.+.| .+.+.|+++|..+.....               .+.|.+++.+|+|.|+|.+.+....  
T Consensus        14 ~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C~~~~~~~s--   76 (170)
T 3ry4_A           14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTCQTGQTSLS--   76 (170)
T ss_dssp             SEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEEEETTSBCC--
T ss_pred             eEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------ceEEEecccccCeEEEEEEeCCCce--
Confidence            3578999999999998876 568999999998865422               4567789999999999999875443  


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l  269 (540)
                      ..+.|.|..       ++.+.. +....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....        .    ..|
T Consensus        77 ~~~~l~v~~-------~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~--------~----~~L  136 (170)
T 3ry4_A           77 DPVHLTVLF-------EWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL--------D----PTF  136 (170)
T ss_dssp             CCEEEEEEC-------CSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESS--------C----CEE
T ss_pred             EeEEEEEEC-------CceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCC--------C----CeE
Confidence            345666664       333333 2344567899999999995 467789999999987653221        1    269


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEE
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGE-SNANLNLNI  301 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v  301 (540)
                      .|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          137 SIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            99999999999999999998875 344455544

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=7.2e-19  Score=159.41  Aligned_cols=224  Identities=13%  Similarity=0.152  Sum_probs=124.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.....   ............|.|.+++.+|+|.|+|.+
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHL---IGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEE---ECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCccee---eeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            566665554 55778999999999974 4678999998875432110   000012234458999999999999999999


Q ss_pred             EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670          287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN  361 (540)
Q Consensus       287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  361 (540)
                      .+...     ..+..+.|.|....    .+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+........ 
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~----~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-  154 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLY----EKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP-  154 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSS----CCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC-
T ss_pred             eccCCCccccccCCCEEEecccCC----CCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc-
Confidence            86422     23455677776532    2566665554 357899999999998765 468999999987654321110 


Q ss_pred             EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe-----eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccc
Q psy670          362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG-----ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRD  436 (540)
Q Consensus       362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (540)
                        .........|.|.+++  |+|.|+|.|.+...     ..+..+.|.|..                             
T Consensus       155 --~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g-----------------------------  201 (257)
T 1b6u_A          155 --KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG-----------------------------  201 (257)
T ss_dssp             --CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC-----------------------------
T ss_pred             --ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec-----------------------------
Confidence              0011112379999998  99999999997632     223446666655                             


Q ss_pred             cccCcccccceeeeeeeeceeecC-CcEEEecCCCeEEEEEEEeeecCCceEEEecCe
Q psy670          437 FSVNPQFKKYSVLTLSVVPVIREV-PKVVTISKKKTVVIECKVMSMYEPSVTWMKEKN  493 (540)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~p~i~~~-~~~~~~~~g~~~~l~C~v~g~p~~~v~W~~~~~  493 (540)
                                       +|.+..+ +.......|..+.|.|.+ |.+-..+.|..-+-
T Consensus       202 -----------------~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~  241 (257)
T 1b6u_A          202 -----------------NPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLNLDL  241 (257)
T ss_dssp             -----------------CC---------------------------------------
T ss_pred             -----------------cCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence                             3433311 222234568889999888 88888899987543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.79  E-value=1.8e-18  Score=153.94  Aligned_cols=184  Identities=12%  Similarity=0.221  Sum_probs=119.5

Q ss_pred             eccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCC---EE--e-ecc------------CceEEEEecCCCeEEEEEE
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKAD---KL--V-KES------------SKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~---~~--l-~~~------------~~~~~~~~~~~~~~~~~l~  270 (540)
                      +...+ ...+.+|+.+.|.|.+.+. |.+.+.|++..   ..  + ...            .++....    ......|.
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~   78 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS----SGADRYLS   78 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE----ETTEEEEE
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec----CCceEEEE
Confidence            34445 6778899999999999998 88999999832   11  0 000            1222111    11134799


Q ss_pred             EeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eE
Q psy670          271 ITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EI  343 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i  343 (540)
                      |.+++.+|+|.|.|.+.+..+     .......|.|...+   ..+|.+...+.......|+.++|.|.+.+ .|.+ .+
T Consensus        79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v  155 (218)
T 3s96_B           79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP---KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTV  155 (218)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCC---CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCC---CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEE
Confidence            999999999999999998765     23334566666421   12566554333334456799999999998 5766 89


Q ss_pred             EEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          344 VWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       344 ~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      .|+++|..+............++.. ..+.|.|.....+|+|.|+|.|.|..+...+++
T Consensus       156 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          156 AWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            9999999887632211111112222 123588888888899999999999988766554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.79  E-value=3.9e-19  Score=157.64  Aligned_cols=178  Identities=15%  Similarity=0.177  Sum_probs=123.0

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|.  +....            ...++....     .....+|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   83 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-----SGNMATLTISKAQAGDEA   83 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-----cCCEEEEEECCCChhhCE
Confidence            45688999999999999889999999982  22110            122333322     112348999999999999


Q ss_pred             EEEEEEEcCCc---eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEeecc
Q psy670          177 NYRCNACNSIG---ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVKES  251 (540)
Q Consensus       177 ~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~~~  251 (540)
                      .|+|.+.+..+   .....+.|.|...+.   .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|..+...
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  160 (213)
T 3mj8_L           84 DYYCQSWDGTNSAWVFGSGTKVTVLGQPN---AAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG  160 (213)
T ss_dssp             EEEEEEEETTTTEEEEBCCEEEEEECSCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             EEEEEeccCCcceeEEcCceEEEEeCCCC---CCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence            99999999877   345556777764221   25666555544445589999999999884 44 489999999988653


Q ss_pred             CceEEEE-ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670          252 SKIKIIV-NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN  296 (540)
Q Consensus       252 ~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  296 (540)
                      ....... ..........|.|.++..+|.|.|+|.|.|..+....+
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  206 (213)
T 3mj8_L          161 VKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS  206 (213)
T ss_dssp             EEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred             cccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence            2111111 11112223579999999999999999999987544433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.79  E-value=9.3e-19  Score=161.23  Aligned_cols=189  Identities=15%  Similarity=0.239  Sum_probs=120.9

Q ss_pred             eeccCCceeecCCCCeEEEEEEec---ccCCCeEEEEeCCEEeeccCc----------------eEEEEecCCCeEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCS---AKPRPEVKWFKADKLVKESSK----------------IKIIVNEQDDTYEIIC  269 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~---~~p~~~v~W~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~l  269 (540)
                      .+...+..+.+.+|+.+.|.|.+.   +.+.+.+.|++++........                ...............|
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            344556677888999999999997   667778999996542211100                0011100111111479


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE---EccCCCeEEEE
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV---KAKPMPEIVWF  346 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~---~~~p~~~i~W~  346 (540)
                      .|.+++.+|+|.|+|.+.+..+.......+.+.+.+.          .+....+.+|+.++|.|.+   .+.|.+.+.|+
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~----------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~  156 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE----------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM  156 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC----------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEE
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc----------CCCccccccCCcEEEEEEecCCCCCCccceEEE
Confidence            9999999999999999998765543333344433211          2345678899999999999   56789999999


Q ss_pred             ECCEEc-cCC-----------------Cce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          347 HEGKEL-QQT-----------------DRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       347 ~~~~~~-~~~-----------------~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +++... ...                 .++  +.....+......+|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence            943211 110                 000  000000000112279999999999999999999999998888888885


Q ss_pred             E
Q psy670          407 M  407 (540)
Q Consensus       407 ~  407 (540)
                      .
T Consensus       237 ~  237 (268)
T 3mj6_A          237 Q  237 (268)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.79  E-value=4.7e-19  Score=162.19  Aligned_cols=250  Identities=14%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      |....+.+|+++.|.|.+....+..+.|...  ...+..           .+.....+.+.+++.+  +.|+|.+.....
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~-----------~g~~~~~~~l~~v~~~--~~y~C~~~~~~~   72 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQED--SQPMCYSNCPDG   72 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCC-----------SCSSEEEEEEESCCSC--CCCEEEEECSSC
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccccc-----------CCCceEEEEEEecccC--CeEEEEEEcCCc
Confidence            4566788999999999997543334888531  111100           1111225788888744  469999975433


Q ss_pred             CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC--eEEEEECCEEccCCCceEEEEEecCCe
Q psy670          292 ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP--EIVWFHEGKELQQTDRISWNVTLKGDK  368 (540)
Q Consensus       292 ~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~  368 (540)
                      .....+.+.|...|.    .+.+.  +....+.+|+.++|+|.+.+. |..  .|+|++++..+.....       .+..
T Consensus        73 ~~~~~v~l~V~~~P~----~v~I~--~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~~  139 (291)
T 1mq8_A           73 QSTAKTFLTVYWTPE----RVELA--PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEP  139 (291)
T ss_dssp             EEEEECEEEECBCCS----CCCBC--CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBTT
T ss_pred             cEEEEEEEEEecCCC----CCEEe--cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCCC
Confidence            445556666665432    22222  222347789999999999875 443  5899999987753221       1112


Q ss_pred             eEEEEEEcCCCCCCCeeEEEEEEcCCee--------eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccC
Q psy670          369 YHIRLEVKDPRKEDTGLYKCNIKNFHGE--------LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVN  440 (540)
Q Consensus       369 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (540)
                      ...+|.+...+.+|.+.|+|+|.|..+.        .+....|.|..+|.                              
T Consensus       140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~------------------------------  189 (291)
T 1mq8_A          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA------------------------------  189 (291)
T ss_dssp             EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------
T ss_pred             ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCC------------------------------
Confidence            2346777777777777999999987542        24445666665210                              


Q ss_pred             cccccceeeeeeeeceeecCCcEEEecCCCeEEEEEEEeeecCC---ceEEEecCeecCCC-----CeEEEEE----Eec
Q psy670          441 PQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIECKVMSMYEP---SVTWMKEKNTVKED-----NKHVVHI----EQV  508 (540)
Q Consensus       441 ~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~~---~v~W~~~~~~l~~~-----~~~~~~~----~~~  508 (540)
                                  ..+.+.. +  ..+.+|+.++|.|.+.|.|++   .++|+++|+.+...     +......    .+.
T Consensus       190 ------------~~~~~~~-p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g~~~~~~~~~~~~~~  254 (291)
T 1mq8_A          190 ------------TPPQLVS-P--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE  254 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------CCceecC-C--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecCCeEEEEEecceeEc
Confidence                        0122322 2  257789999999999997665   69999999988632     2222211    233


Q ss_pred             C--CeEEEEEEeeeeeeeeCCeeEEEEEe
Q psy670          509 K--DVSMNFELWLGIVEKRGPSIKIIYYI  535 (540)
Q Consensus       509 ~--~g~y~c~~~~~~~~~~~~~~~~~~~~  535 (540)
                      +  .+.|+|.+.+.....++ ...+.+|-
T Consensus       255 ~~~~~~~~C~~~~~~~~~~~-~~~l~v~~  282 (291)
T 1mq8_A          255 DEGTQRLTCAVILGNQSQET-LQTVTIYS  282 (291)
T ss_dssp             -----------------------------
T ss_pred             CCCCEEEEEEEEeCCcceEE-EEEEEEEc
Confidence            3  45677888876666665 55555554

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.79  E-value=1.8e-18  Score=155.46  Aligned_cols=186  Identities=16%  Similarity=0.320  Sum_probs=128.2

Q ss_pred             CCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEE-----ee----ccCceEEEEe----------cCCCeEEEEEEEe
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKL-----VK----ESSKIKIIVN----------EQDDTYEIICEIT  272 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~-----l~----~~~~~~~~~~----------~~~~~~~~~l~i~  272 (540)
                      .+....+.+|+.+.|.|.+.+.+. +.+.|++++..     +.    ....+.....          ....   ..|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~~L~i~   82 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ---GRLVLA   82 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT---CCEEES
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC---ceEEEc
Confidence            455677889999999999999885 89999985432     11    0111111111          0111   139999


Q ss_pred             CCCCCCcEEEEEEEEcCC-CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE-EEEEEE-EccCCCeEEEEECC
Q psy670          273 DPIGPDSGTYRCNVKNEF-GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV-VMECKV-KAKPMPEIVWFHEG  349 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v-~l~C~~-~~~p~~~i~W~~~~  349 (540)
                      +++.+|+|.|+|.+.+.. +.....+.|.|...+.    .|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|+++|
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~  158 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE----ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNG  158 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC----CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETT
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecCC----CcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECC
Confidence            999999999999999986 6667777788776432    3566666666667789988 999999 89999999999999


Q ss_pred             EEccCCC----ceEEEE---EecCCee--EEEEEEcCCCCCCCeeEEEEEEc-----CCee-eEEEEEEEE
Q psy670          350 KELQQTD----RISWNV---TLKGDKY--HIRLEVKDPRKEDTGLYKCNIKN-----FHGE-LNANLTLNI  405 (540)
Q Consensus       350 ~~~~~~~----~~~~~~---~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~V  405 (540)
                      ..+....    +..+..   ....+.+  .+.|.|.....+|.|.|+|.|.|     ..|. .+..+.|.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          159 QRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             EECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             ccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            9987655    332221   1112222  24688886666679999999999     4454 445555544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.79  E-value=1e-18  Score=154.59  Aligned_cols=182  Identities=12%  Similarity=0.187  Sum_probs=123.5

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      ...+ ...+.+|+.++|.|.+.  +.+.+.|+++  +..+.            ...++.....    .....|.|.+++.
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~   77 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKS----GNTASLTVSGLQT   77 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE----TTEEEEEEESCCG
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEcc----CCEEEEEECCCCh
Confidence            3344 77788999999999998  8889999994  22211            1122222211    1134799999999


Q ss_pred             CCcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEc
Q psy670          277 PDSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKEL  352 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~  352 (540)
                      +|+|.|+|.+.+..+  .......|.|...+   ..+|.+...+.......|+.++|.|.+.+.  |.+.+.|+++|..+
T Consensus        78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  154 (211)
T 3tv3_L           78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV  154 (211)
T ss_dssp             GGCEEEEEEEEETTTEEEECCCEEEEECCSC---CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             hHCEEEEEEEecCCCceeECCCceEEEeCCC---CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence            999999999999877  34445666665321   125666555443334479999999999985  35789999999988


Q ss_pred             cCCCceEEEEEecCCe--eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          353 QQTDRISWNVTLKGDK--YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       353 ~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      .............++.  ..+.|.|..+..+|+|.|+|.|.|..+...+++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            6532111111112222  2347999998888999999999999877666543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.78  E-value=1.1e-18  Score=154.66  Aligned_cols=174  Identities=18%  Similarity=0.225  Sum_probs=118.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Eee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|+++.|.|.+.+.|.+.+.|+|++  ..+          .  ...++....     .....+|.|.+++.+|+|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L           10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-----CCCEEEEEECCCChhhCE
Confidence            456889999999999988888899999843  211          0  112333322     112348999999999999


Q ss_pred             EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCc
Q psy670          177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSK  253 (540)
Q Consensus       177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~  253 (540)
                      .|+|.+.+..+.. ...+.|.|....    .+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|..+.....
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  160 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  160 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred             EEEEeeecCCcceeCCCEEEEEecCC----CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence            9999999887643 223456665322    2455544333323346889999999987 6665 8999999998865511


Q ss_pred             eEEE-EecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          254 IKII-VNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       254 ~~~~-~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      .... .....+  ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            1111 111122  234589999999999999999999976554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.78  E-value=1.3e-18  Score=154.23  Aligned_cols=180  Identities=16%  Similarity=0.269  Sum_probs=120.9

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe----------ec--cCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV----------KE--SSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l----------~~--~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      ...+..+.+.+|+++.|.|.+.+.|.+.+.|++++  ..+          ..  ..++.....    .....|.|.+++.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~   80 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS----GTDFTLSINSVET   80 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTEEEEEESSCCG
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcC----CCEEEEEECCCCh
Confidence            34466777889999999999999888899999843  211          00  122222211    1124799999999


Q ss_pred             CCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEcc
Q psy670          277 PDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQ  353 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~  353 (540)
                      +|+|.|+|.+.+..+.. .....+.|....    .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|..+.
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L           81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hhCEEEEEeeecCCcceeCCCEEEEEecCC----CCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            99999999999986643 223456664321    1455544332223347899999999987 5665 899999999886


Q ss_pred             CCCceEEEEEec-CC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          354 QTDRISWNVTLK-GD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       354 ~~~~~~~~~~~~-~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ............ ++  ...+.|.|.++..+|+|.|+|.|.|......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence            651111111111 11  1245899999999999999999999876643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.78  E-value=2.1e-18  Score=155.04  Aligned_cols=172  Identities=11%  Similarity=0.251  Sum_probs=121.9

Q ss_pred             CccccCCCeEEEEEEEeecCC-CceEEEeCCEeec---------CCCceEEEEe---------ecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPM-PDIIWYQGTKVIE---------DTGRIKMSKK---------SIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|+++.|.|.+.+.+. +.+.|++++....         ....+.....         ....+.   .|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L~i~~v~   85 (231)
T 2pet_A            9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RLVLAEAQ   85 (231)
T ss_dssp             EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CEEESSCC
T ss_pred             cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc---eEEEcccC
Confidence            456889999999999988885 8999998654311         0000100000         011111   49999999


Q ss_pred             CCCCeEEEEEEEcCC-ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeE-EEEEEe-cccCCCeEEEEeCCEEe
Q psy670          172 KDDGGNYRCNACNSI-GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLI-QMKCKC-SAKPRPEVKWFKADKLV  248 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W~~~~~~l  248 (540)
                      .+|+|.|+|.+.+.. +.....+.|.|...+.    .|.+...+....+.+|+.+ .|.|.+ .+.|.+.+.|++++..+
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~----~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~  161 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPE----ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL  161 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC----CCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCC----CcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccC
Confidence            999999999999987 7778888888886433    4566666666677789988 999999 88999999999999988


Q ss_pred             eccC----ceEEEEe---cCCCeE--EEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          249 KESS----KIKIIVN---EQDDTY--EIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       249 ~~~~----~~~~~~~---~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      ....    ...+...   ...+.+  .+.|.|.....+|.|.|+|.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          162 EVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            7655    3332211   122222  246888766666799999999994

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=3.4e-18  Score=154.95  Aligned_cols=214  Identities=12%  Similarity=0.155  Sum_probs=118.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----  187 (540)
                      ..+.+|++++|.|.+. .+.+.|.|+|+|..+.....   .. ..........|.|.+++.+|+|.|+|.+.+...    
T Consensus        16 ~~V~~G~~VtL~C~~~-~~~~~~~W~k~g~~~~~~~~---~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~   90 (257)
T 1b6u_A           16 PLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHL---IG-EHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQL   90 (257)
T ss_dssp             SEEESSCCEEEEEEES-SCCSEEEEEEESTTCEEEEE---EC-BCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSC
T ss_pred             CEecCCCCEEEEEecC-CCCcEEEEEECCCCCCccee---ee-eccCCCceEEEEeecCCcccCEEEEEeEeccCCCccc
Confidence            4678999999999995 45678999998865421100   00 001112334899999999999999999986421    


Q ss_pred             -eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          188 -ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       188 -~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                       ..+..+.|.|.+..    ..|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+........   ...+...
T Consensus        91 s~~S~~~~L~V~~~~----~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~---~~~~~~~  161 (257)
T 1b6u_A           91 SAPSDPLDIVITGLY----EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGP---KVNGTFQ  161 (257)
T ss_dssp             CCCCCCEEEEEECSS----CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBC---CSSSCCB
T ss_pred             cccCCCEEEecccCC----CCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCccccccc---ccCCcee
Confidence             23556677776522    2556655444 3578999999999998754 68999999987654321110   0111123


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEccCC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAKPM  340 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~p~  340 (540)
                      ..|.|.+++  |+|.|+|.+.+...     ..+..+.|.|...+       .+.. .+.......|..+.|.|.+ |.+.
T Consensus       162 ~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p-------~~~~p~~~~~~~~~g~~~~l~~~~-~~~~  231 (257)
T 1b6u_A          162 ADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP-------SNSWPSPTEPSSETGNPRHLHAAA-EQKL  231 (257)
T ss_dssp             EEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC------------------------------------
T ss_pred             EEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccC-------CCCCCCCcccCccCCCeEEEEEEE-cchH
Confidence            478999998  99999999997532     23455667776632       2221 1122234568889998765 6677


Q ss_pred             CeEEEEECC
Q psy670          341 PEIVWFHEG  349 (540)
Q Consensus       341 ~~i~W~~~~  349 (540)
                      +.|.|...+
T Consensus       232 ~~~~~~~~~  240 (257)
T 1b6u_A          232 ISEEDLNLD  240 (257)
T ss_dssp             ---------
T ss_pred             HHHHHhhhh
Confidence            788887544

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.78  E-value=5.1e-19  Score=157.99  Aligned_cols=185  Identities=16%  Similarity=0.258  Sum_probs=121.7

Q ss_pred             CCccccCCCeEEEEEEEeecCC-----CceEEEeCCEee-------------cCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          110 KPTIHQDGDLLVMECVLEASPM-----PDIIWYQGTKVI-------------EDTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~-----~~v~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      .++.+.+|++++|.|.+.+.+.     +.+.|++++...             ....+..+...  .......+|.|.+++
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~sL~I~~v~   80 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPD--LLVQGNASLRLQRVR   80 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTT--TGGGTBCCEEECSCC
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecc--cccCCeEEEEECCcc
Confidence            3466889999999999977654     579999976432             01112211110  001112379999999


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEe-CCEEee
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFK-ADKLVK  249 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~-~~~~l~  249 (540)
                      .+|+|.|+|.+.+.. .....+.|.|.....    .|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+.
T Consensus        81 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~----~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~  154 (222)
T 4i0k_A           81 VTDEGSYTCFVSIQD-FDSAAVSLQVAAPYS----KPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLT  154 (222)
T ss_dssp             GGGCSCEEEEEEECC-CCCCCCCCCCCBCCC----CCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             cccCEEEEEEEEeCC-CceEEEEEEEEcCCC----CCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCC
Confidence            999999999999753 334455555554221    34554433 3356789999999999 779999999999 444443


Q ss_pred             ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeec
Q psy670          250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAE  304 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~  304 (540)
                      .........  ........|.|.+++.+|.|.|+|.+.|..|.....+.|.|...
T Consensus       155 ~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  207 (222)
T 4i0k_A          155 GNVTTSQMA--NERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ  207 (222)
T ss_dssp             SEEEEEEEE--CTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred             CCcceeEEc--CCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence            322222211  22222235788899999999999999999999988888888763

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.77  E-value=5.1e-18  Score=150.23  Aligned_cols=181  Identities=13%  Similarity=0.196  Sum_probs=119.7

Q ss_pred             CceeecCCCCeEEEEEEecccC---CCeEEEEeCC--EEee------------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP---RPEVKWFKAD--KLVK------------ESSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~--~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      +....+.+|+.++|.|.+.+.|   .+.+.|++++  ..+.            ...++.....    .....|.|.+++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~   82 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI----GDKAALTITGAQT   82 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCG
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEee----CCEEEEEECCCCc
Confidence            6677788999999999998876   4689999853  2220            0122222211    1124799999999


Q ss_pred             CCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-CC-eEEEEECCEEcc
Q psy670          277 PDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-MP-EIVWFHEGKELQ  353 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~~-~i~W~~~~~~~~  353 (540)
                      +|+|.|.|.+.+..+.. .....+.|...+   ..+|.+...+.......|+.++|.|.+.+.+ ++ .|.|+++|..+.
T Consensus        83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  159 (212)
T 1q0x_L           83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQP---KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT  159 (212)
T ss_dssp             GGCEEEEEEEECSSCEEECCCEEEEECCSC---CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCEEEEEEEecCchhhcCCCeEEEEecCC---CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence            99999999999876532 233455553221   1256655433333344689999999999854 43 899999999886


Q ss_pred             CCCceEEEEEecCC--eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          354 QTDRISWNVTLKGD--KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       354 ~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ............++  ...+.|.|..+..+|+|.|+|.|.|......+++
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            54221101111111  2235799999989999999999999887655443

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.77  E-value=8.2e-19  Score=155.48  Aligned_cols=172  Identities=13%  Similarity=0.027  Sum_probs=119.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEE--EEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL--RLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ..     ......  .|.|.+++.+|+|.|+|.+.+..+..
T Consensus        18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   90 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-RL-----KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF   90 (218)
T ss_dssp             SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-EC-----C----CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-cC-----CCCcceeeEEEEcccccccCEEEEEEEEcCCCce
Confidence            36789999999999965 67799999988765322110 00     001122  79999999999999999999976533


Q ss_pred             --EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEE
Q psy670          190 --NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       190 --~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (540)
                        +..+.|.|....    .+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+|+|..+...  ..  .. .   ...
T Consensus        91 ~~s~~~~l~V~~~~----~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~~--~~-~---~~~  157 (218)
T 1uct_A           91 RYSDTLELVVTGLY----GKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ--SG-E---HPA  157 (218)
T ss_dssp             EECCCEEEEEECSS----CCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE--EC-S---SSE
T ss_pred             eecCCEEEEEcCcc----cCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--cc--CC-C---ccC
Confidence              345667776422    145554444 346789999999997777778899999999876541  11  11 1   113


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEee
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEA  303 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~  303 (540)
                      .|.|.+++.+|+|.|+|.|.+...     ..+..+.|.|..
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          158 NFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             EEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             EEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            799999999999999999998532     234456666654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.77  E-value=3.6e-18  Score=150.98  Aligned_cols=174  Identities=18%  Similarity=0.229  Sum_probs=117.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|+  +..+            ....++....     ......|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-----cCCEEEEEECCCCHHHCe
Confidence            45688999999999998888889999984  2221            0112333322     112348999999999999


Q ss_pred             EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCc
Q psy670          177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSK  253 (540)
Q Consensus       177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~  253 (540)
                      .|+|.+.+..+.. .....|.|....    .+|.+...+.......|+.++|.|.+.+ .|++ .|.|+++|..+.....
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLELKRAD----AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred             EEEEEEEcCCCceeCCCEEEEEcCCC----cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence            9999999876543 223456665321    2455544333323347999999999987 5554 8999999998765411


Q ss_pred             eEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          254 IKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       254 ~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      ... ......+  ...+.|.|.++..+|+|.|+|.|.|.....
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            111 1111222  234589999999999999999999976543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.77  E-value=1.4e-18  Score=160.06  Aligned_cols=198  Identities=17%  Similarity=0.248  Sum_probs=119.9

Q ss_pred             CCccccCCCeEEEEEEEe---ecCCCceEEEeCCEeecCC------------------CceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLE---ASPMPDIIWYQGTKVIEDT------------------GRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~---~~p~~~v~W~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ....+.+|++++|.|.+.   +.+.+.+.|++++......                  .+..+....   .....+|.|.
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~   89 (268)
T 3mj6_A           13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDT---FHNDGSLLLQ   89 (268)
T ss_dssp             CEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCT---TTTBCCEEEC
T ss_pred             CceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecC---CCCEEEEEEC
Confidence            346788999999999996   5667789999965432111                  222221110   0111379999


Q ss_pred             CCCCCCCeEEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe---cccCCCeEEEEe
Q psy670          169 NPTKDDGGNYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC---SAKPRPEVKWFK  243 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~  243 (540)
                      +++.+|+|.|+|.+.+..+..  ...+.|.|..            ..+....+.+|+.+.|.|.+   .+.|.+.+.|++
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           90 DVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             SCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             CCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------------cCCCccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence            999999999999999875543  4455555541            12345677889999999999   567899999999


Q ss_pred             CCEE-eeccCce-------------------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          244 ADKL-VKESSKI-------------------KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       244 ~~~~-l~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      ++.. .......                   ..............|.|.+++.+|+|.|+|.|.|..+.....+.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             ECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence            4321 1110000                   0000000001123799999999999999999999888888888888754


Q ss_pred             ccCCCCCCCeEEeCCceEEeeCCCe
Q psy670          304 EAEPEGDPPTFIEKPKIRSEQGGKL  328 (540)
Q Consensus       304 ~~~~~~~~p~~~~~~~~~~~~~g~~  328 (540)
                      .      +|.+...|....+.+|+.
T Consensus       238 ~------~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          238 D------EFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             C------------------------
T ss_pred             C------CCeeeeCCCCCCCCccee
Confidence            3      444444455444544444

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.77  E-value=4.4e-18  Score=150.43  Aligned_cols=176  Identities=15%  Similarity=0.223  Sum_probs=118.5

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIGPDS  279 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  279 (540)
                      |....+.+|+.++|.|.+.+.|.+.+.|+++.  ..+   .         ...++.....    .....|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~   82 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS----GTDFTLTIDPVEADDT   82 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGC
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEec----CCEEEEEECCCCHHHC
Confidence            66778889999999999999888899999842  221   0         0122222211    1124799999999999


Q ss_pred             EEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCC
Q psy670          280 GTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTD  356 (540)
Q Consensus       280 g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~  356 (540)
                      |.|+|.+.+..+.. .....+.|....    .+|.+...+.......|+.++|.|.+.| .|.+ .|.|+++|..+....
T Consensus        83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~  158 (210)
T 1lk3_L           83 AIYFCQQSWNGPLTFGAGTKLELKRAD----AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGV  158 (210)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTE
T ss_pred             eEEEEEEEcCCCceeCCCEEEEEcCCC----cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCc
Confidence            99999999876543 223456664321    2455554333223447999999999997 4554 899999999886541


Q ss_pred             ceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          357 RISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       357 ~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ........  ++. ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          159 LDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            11111111  111 224589999999999999999999987643

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=5e-18  Score=147.03  Aligned_cols=168  Identities=11%  Similarity=0.045  Sum_probs=115.4

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~  190 (540)
                      .+.+|++++|.|.+.+ +.+.+.|+|+|..+......      .........|.|.+++.+|+|.|+|.+.+..+..  +
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s   86 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   86 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc------cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCC
Confidence            5789999999999854 45689999999876421000      0011122389999999999999999998865432  4


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|.+..    .+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+...    ...    ......|.
T Consensus        87 ~~~~l~V~~~~----~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~----~~~----~~~~~~L~  152 (188)
T 1oll_A           87 NLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ----RGY----GKVQAEFP  152 (188)
T ss_dssp             CCEEEEEESCS----CCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE----EEE----CSSEEEEE
T ss_pred             CceEEEecccC----CCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc----ccC----CCceeEEE
Confidence            55667776421    145554444 3456789999999998764 5689999998766431    111    11224799


Q ss_pred             EeCCCCCCcEEEEEEEEcCCC---CeeeeEEEEE
Q psy670          271 ITDPIGPDSGTYRCNVKNEFG---ESNANLNLNI  301 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~---~~~~~~~l~v  301 (540)
                      |.+++.+|+|.|+|.+.|...   ..+..+.|.|
T Consensus       153 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          153 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             EEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             ECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            999999999999999998642   2334445544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.77  E-value=1.9e-17  Score=145.09  Aligned_cols=172  Identities=15%  Similarity=0.209  Sum_probs=118.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.........   ........|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH---HDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE---ETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec---CCCCceEEEEeccCCcccCeEEEEeE
Confidence            556655554 56778999999999974 67799999998765432110000   11223457999999999999999999


Q ss_pred             EcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE
Q psy670          287 KNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN  361 (540)
Q Consensus       287 ~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~  361 (540)
                      .+...     ..+..+.|.|....    .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+.......  
T Consensus        83 ~~~~~~~~~~~~s~~~~l~V~~~~----~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--  154 (201)
T 1nkr_A           83 SVTHSPYQVSAPSDPLDIVIIGLY----EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAG--  154 (201)
T ss_dssp             EBTTBTTCCCCCCCCEEEEEECSS----CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECE--
T ss_pred             ecCCCCccccCCCCCEEEEeeccC----CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccc--
Confidence            86431     23455677776532    2566665554 46789999999999876 567999999998764322111  


Q ss_pred             EEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          362 VTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       362 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                       ..........|.|.+++  |+|.|+|.|.+..
T Consensus       155 -~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          155 -PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             -EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             -cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence             11112224489999998  9999999999764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.77  E-value=8.6e-19  Score=156.50  Aligned_cols=184  Identities=17%  Similarity=0.215  Sum_probs=121.6

Q ss_pred             eeecCCCCeEEEEEEecccCC-----CeEEEEeCCEEeec----cC-------ceEEEEec-CCCeEEEEEEEeCCCCCC
Q psy670          216 IIPNESGTLIQMKCKCSAKPR-----PEVKWFKADKLVKE----SS-------KIKIIVNE-QDDTYEIICEITDPIGPD  278 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~-----~~v~W~~~~~~l~~----~~-------~~~~~~~~-~~~~~~~~l~i~~~~~~d  278 (540)
                      .+.+.+|+++.|.|.+.+.|.     +.+.|++++.....    ..       ........ ........|.|.+++.+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            345678999999999987654     67999997643210    00       00000000 000012369999999999


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEEC-CEEccCCC
Q psy670          279 SGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHE-GKELQQTD  356 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~-~~~~~~~~  356 (540)
                      +|.|+|.+.+. +.....+.|.|...+    .+|.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+....
T Consensus        84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~----~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~  157 (222)
T 4i0k_A           84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY----SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV  157 (222)
T ss_dssp             CSCEEEEEEEC-CCCCCCCCCCCCBCC----CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE
T ss_pred             CEEEEEEEEeC-CCceEEEEEEEEcCC----CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc
Confidence            99999999985 334444555554422    135554444 3456789999999999 7899999999994 54443322


Q ss_pred             ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          357 RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .  .............|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       158 ~--~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  206 (222)
T 4i0k_A          158 T--TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITG  206 (222)
T ss_dssp             E--EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred             c--eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeC
Confidence            2  222223333334688889999999999999999999999999999887

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=1.8e-17  Score=143.96  Aligned_cols=163  Identities=15%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             CCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeec---cCc----e---------EEEEecCCCeEEEEEEEeCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKE---SSK----I---------KIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~---~~~----~---------~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      .+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+..   ...    .         +.... .    ...|.|.+++
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~----~~sL~I~~v~   78 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-Q----SYSLQLSNLK   78 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-T----TCCEEECSCC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-C----CeEEEECCCC
Confidence            345667788999999999975 45578999999865421   000    0         01111 1    1369999999


Q ss_pred             CCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCC-eEEEEEEEEcc-CCCeEEEEECCEEcc
Q psy670          276 GPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGK-LVVMECKVKAK-PMPEIVWFHEGKELQ  353 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~-~v~l~C~~~~~-p~~~i~W~~~~~~~~  353 (540)
                      .+|+|.|+|.+.+..+.....+.|.|...+    ..|.+...+  .....|. .++|.|.+.+. |.+.+.|+++|..+.
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~----~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~  152 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILRQL----RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS  152 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCC----EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEccC----CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence            999999999999988766666777775421    123343332  1233455 89999999985 588999999998663


Q ss_pred             CCCceEEEEEecCCeeEEEEEEcCCCCC-CCeeEEEEEEcCCeeeEEEE
Q psy670          354 QTDRISWNVTLKGDKYHIRLEVKDPRKE-DTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ...               .|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus       153 ~~~---------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          153 SQP---------------NLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             SSS---------------EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             CCC---------------eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            321               4555443443 89999999999999875543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.76  E-value=6.6e-18  Score=149.51  Aligned_cols=174  Identities=15%  Similarity=0.178  Sum_probs=116.1

Q ss_pred             CccccCCCeEEEEEEEeecC---CCceEEEeCC--Eee------------cCCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP---MPDIIWYQGT--KVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ...+.+|++++|.|.+.+.|   .+.+.|+|++  ..+            ....++....     ....+.|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~   83 (212)
T 1q0x_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGDKAALTITGAQTE   83 (212)
T ss_dssp             EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-----eCCEEEEEECCCCcc
Confidence            45688999999999998877   4689999952  222            1123333322     112348999999999


Q ss_pred             CCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEeec
Q psy670          174 DGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVKE  250 (540)
Q Consensus       174 d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~~  250 (540)
                      |+|.|.|.+.+..+.. .....|.|.....   .+|.+...+.......|+.++|.|.+.+. |++ .|.|+++|..+..
T Consensus        84 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           84 DEAIYFCALWSNNKLVFGGGTKLTVLGQPK---SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             GCEEEEEEEECSSCEEECCCEEEEECCSCC---BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CCEEEEEEEecCchhhcCCCeEEEEecCCC---CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            9999999999876542 2334566643211   25555443333334468999999999884 443 8999999998865


Q ss_pred             cCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          251 SSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       251 ~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      ............+  ...+.|.|..+..+|.|.|+|.|.|....
T Consensus       161 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          161 GMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             TEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            4221111111222  23457899999999999999999997544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.76  E-value=5.2e-18  Score=151.01  Aligned_cols=182  Identities=15%  Similarity=0.238  Sum_probs=117.1

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+....  ......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~   84 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET--SATTAYLQIN   84 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG--GGTEEEEEEC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec--CCCEEEEEEC
Confidence            3455678999999999998865  678999996  33221                 01222222211  1113479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670          273 DPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF  346 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~  346 (540)
                      +++.+|+|.|.|.+.+..+.    ......+.|....   ..+|.+...+....+.+|+.+.|.|.+.+ .|.| .|.|+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC---CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCC---CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence            99999999999999987632    1234556665421   12455544332234568999999999998 8988 99999


Q ss_pred             ECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          347 HEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      ++|..+........  ...+. ...+.|.|..... |.|.|+|.|.|..+.......|
T Consensus       162 ~~g~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          162 SGSLSSGVHTFPAV--LQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             GGTBCTTEEECCCE--ESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred             eCCcccceEecCCc--ccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence            99876532110000  11121 2234788855444 6699999999998876555544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.76  E-value=5.5e-18  Score=150.84  Aligned_cols=178  Identities=16%  Similarity=0.266  Sum_probs=115.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...++.+....   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   85 (219)
T 1c1e_H            9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET---SATTAYLQINN   85 (219)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG---GGTEEEEEECS
T ss_pred             CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec---CCCEEEEEECC
Confidence            45688999999999998765  678999996  33221                 12333333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670          170 PTKDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK  243 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~  243 (540)
                      ++.+|+|.|+|.+.+..+    .....+.|.|.....   .+|.+...+....+.+|+.+.|.|.+.+ +|.+ .|.|++
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  162 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKT---TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCC---BCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEecCCC---CCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEe
Confidence            999999999999998763    122345666664211   2455543333345678999999999998 8988 999999


Q ss_pred             CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670          244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN  296 (540)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  296 (540)
                      ++..+........ .........+.|.|..... |.|.|+|.|.|..+.....
T Consensus       163 ~g~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~  213 (219)
T 1c1e_H          163 GSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVD  213 (219)
T ss_dssp             GTBCTTEEECCCE-ESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEE
T ss_pred             CCcccceEecCCc-ccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEE
Confidence            9876421111001 1111112335788855544 5599999999987764433

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.76  E-value=9.6e-18  Score=145.75  Aligned_cols=157  Identities=11%  Similarity=0.182  Sum_probs=109.5

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeCCEeec---CCC---------------ceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIE---DTG---------------RIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      .+.+.+|++++|.|.+.+ .+.+.+.|++++..+.   ...               +..+.     .   ..+|.|.+++
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~---~~sL~I~~v~   78 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----Q---SYSLQLSNLK   78 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-----T---TCCEEECSCC
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-----C---CeEEEECCCC
Confidence            456789999999999864 4556899999876542   110               11111     1   1379999999


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCC-eEEEEEEecc-cCCCeEEEEeCCEEee
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGT-LIQMKCKCSA-KPRPEVKWFKADKLVK  249 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~-~p~~~v~W~~~~~~l~  249 (540)
                      .+|+|.|+|.+.+..+.....+.|.|...+.    .|.+...+  .....|. .++|.|.+.+ .|.+.+.|++++..+.
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~----~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~  152 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLR----NIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS  152 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCE----EEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEccCC----CCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence            9999999999999888766778888875221    23343322  1233465 8999999998 4588999999998764


Q ss_pred             ccCceEEEEecCCCeEEEEEEEeCCCCC-CcEEEEEEEEcCCCCeeee
Q psy670          250 ESSKIKIIVNEQDDTYEIICEITDPIGP-DSGTYRCNVKNEFGESNAN  296 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~~~~  296 (540)
                      ...               .|.|.....+ |.|.|+|.|.|..|..+..
T Consensus       153 ~~~---------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~  185 (193)
T 2if7_A          153 SQP---------------NLTVSWDPRISSEQDYTCIAENAVSNLSFS  185 (193)
T ss_dssp             SSS---------------EEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred             CCC---------------eEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence            322               3555433444 8999999999998876443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.76  E-value=2.1e-18  Score=152.56  Aligned_cols=175  Identities=18%  Similarity=0.194  Sum_probs=119.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.  +.+.+.|+|+  +..+.            ...++....     .....+|.|.+++.+|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   81 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-----SGNTASLTVSGLQTDDEA   81 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEEESCCGGGCE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-----cCCEEEEEECCCChhHCE
Confidence            45688999999999997  8889999994  22211            123333322     112348999999999999


Q ss_pred             EEEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCCEEeeccC
Q psy670          177 NYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKADKLVKESS  252 (540)
Q Consensus       177 ~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~l~~~~  252 (540)
                      .|+|.+.+..+  .....+.|.|....   ..+|.+...+....+..|+.+.|.|.+.+.  |.+.+.|+++|..+....
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  158 (211)
T 3tv3_L           82 VYYCGSLVGNWDVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV  158 (211)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEECCSC---CBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred             EEEEEEecCCCceeECCCceEEEeCCC---CcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCc
Confidence            99999999877  34455667776321   125666554444444479999999999884  357899999999886532


Q ss_pred             ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ..........+  ...+.|.|.++..+|.|.|+|.|.|..+....
T Consensus       159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          159 ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             EECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             ccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            11111111222  23357889998888999999999998754443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.75  E-value=1.8e-17  Score=145.27  Aligned_cols=162  Identities=10%  Similarity=0.155  Sum_probs=105.5

Q ss_pred             ccceeee----CcceeEEeecceeeeeecCeeccc------------CCceEEEEecCccceeeEEEEEEcccccCCCee
Q psy670            7 LKSYTLE----GEPTKQIEANFQMNMYHKGSLLKM------------SDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGE   70 (540)
Q Consensus         7 ~~~c~~~----g~p~~~~~~~~~~~W~k~~~~l~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   70 (540)
                      .+.|.+.    |.|.      +.+.|+|++..+..            ..+..+....+       .+|.|.+++.+|+|.
T Consensus        13 ~L~C~~~~~~~~~~~------~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~-------~~L~I~~v~~~D~G~   79 (201)
T 1dr9_A           13 TLSCGHNVSVEELAQ------TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN-------LSIVILALRPSDEGT   79 (201)
T ss_dssp             EECCSCCCCTTHHHH------CEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT-------TEEEECSCCGGGCEE
T ss_pred             EEecccCCCcccccc------cEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCC-------cEEEEecccchhCeE
Confidence            3668875    3455      89999999987621            12222211112       489999999999999


Q ss_pred             EEEEEEccCcce-----eeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeec
Q psy670           71 YKVIAKNKNGEG-----SSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIE  144 (540)
Q Consensus        71 Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~  144 (540)
                      |+|.+.+..|..     ...+.|.|...+..+.+.          ......|+.+.|.|.+ .|.|.+.|.|+++|..+.
T Consensus        80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~----------~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A           80 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSIS----------DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             EEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEE----------EEECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             EEEEEEcCCCCccccccccEEEEEEcCCCCCCceE----------eccCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            999999977654     345666666543111111          0112458999999999 589999999999998886


Q ss_pred             CCCceEEEEeec-CcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          145 DTGRIKMSKKSI-GKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       145 ~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                      .... ....... +.....+.|.+   ..+|.|.|+|.|.|..+..+..+.+
T Consensus       150 ~~~~-~~~~~~~~~~~~~~~~~~v---~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          150 AINT-TVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             CSEE-EEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             cccc-eEEecCCCcEEEEEEEEEE---EecCCCEEEEEEecCcceeeeEEec
Confidence            5422 2221111 11111123333   4589999999999999887766654

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=7e-18  Score=150.52  Aligned_cols=180  Identities=15%  Similarity=0.212  Sum_probs=118.7

Q ss_pred             eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee----c------------cCceEEEEecCCCeEEEEEEEe
Q psy670          216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK----E------------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~----~------------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|++..  ..   +.    .            ..++.+.....  .....|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~   86 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS--QSILYLQMN   86 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT--TTEEEEEEC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC--CCeEEEEEC
Confidence            45677899999999998765  6789999843  21   10    0            12333322211  123579999


Q ss_pred             CCCCCCcEEEEEEEEcCCC-----CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670          273 DPIGPDSGTYRCNVKNEFG-----ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW  345 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W  345 (540)
                      +++.+|+|.|.|.+.+..+     .......+.|...+   ..+|.+...+....+..|+.++|.|.+.|. |.| .|.|
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  163 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW  163 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC---CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC---CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEE
Confidence            9999999999999998654     22234566665421   124555443322235679999999999985 888 9999


Q ss_pred             EECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          346 FHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      +++|..+... ... ....++. ...+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus       164 ~~~g~~~~~~-~~~-~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          164 NSGSLSSGVH-TFP-AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             GGGTBCTTEE-EEE-EEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ecCCeEcceE-ecc-ccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            9998765432 111 1112221 123479999999889 99999999998876555444

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=2.7e-17  Score=147.94  Aligned_cols=180  Identities=14%  Similarity=0.174  Sum_probs=125.0

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++..+.....     ..........|.|.+++.+|+|.|+|.+
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-----cccCCcceeEEEecCCCcccCeEEEEEE
Confidence            5666655655 6788999999999875 4568999999987642110     0011223357999999999999999999


Q ss_pred             EcCCCC--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe
Q psy670          287 KNEFGE--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL  364 (540)
Q Consensus       287 ~~~~~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  364 (540)
                      .+..+.  .+..+.|.|....    .+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+++|..+..    ..  ..
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~----~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~--~~  147 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMY----DTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QR--GY  147 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCS----CCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EE--EE
T ss_pred             ecCCccccCCcceEEEeeccc----CCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cc--cC
Confidence            875432  3455677776422    2556655443 457899999999998754 469999999876543    11  11


Q ss_pred             cCCeeEEEEEEcCCCCCCCeeEEEEEEcCC-e--eeEEEEEEEEEE
Q psy670          365 KGDKYHIRLEVKDPRKEDTGLYKCNIKNFH-G--ELNANLTLNIEM  407 (540)
Q Consensus       365 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~  407 (540)
                      ..  ....|.|.+++.+|+|.|+|.+.|.. .  ..+..+.|.|..
T Consensus       148 ~~--~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          148 GK--VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             CS--SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CC--ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            11  12389999999999999999999864 2  234556666665

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.75  E-value=1.5e-18  Score=159.83  Aligned_cols=210  Identities=16%  Similarity=0.223  Sum_probs=113.0

Q ss_pred             cccCCCeeEEEEEEccCcceeeeEEEEEeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeC--C
Q psy670           63 VQKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQG--T  140 (540)
Q Consensus        63 ~~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~  140 (540)
                      .+.+|.+.|.|++.+..|.......+.|...               ...+.+.+|++++|.|.+.+ +.+.+.|+|.  +
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~---------------p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~   66 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQT---------------PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKN   66 (270)
T ss_dssp             -------------------------CCCEEE---------------CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTT
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEeC---------------CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCC
Confidence            3678999999999988765544443333322               22456889999999999854 6779999982  2


Q ss_pred             Eee----c-CCC-----------ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----eeEEEEEEEEecC
Q psy670          141 KVI----E-DTG-----------RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----ESNANIALNFQGG  200 (540)
Q Consensus       141 ~~~----~-~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~  200 (540)
                      ...    . ...           ++.+..    ......+|.|.+++.+|+|.|.|.+.+...    .....+.|.|...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~  142 (270)
T 3qib_D           67 NEFKFLINFQNQEVLQQIDMTEKRFSAEC----PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLED  142 (270)
T ss_dssp             CCEEEEEEEETTEEEEECHHHHHHEEEEC----CTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESC
T ss_pred             CCcEEEEEECCCCceecCCccCCcEEEEe----CCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccc
Confidence            111    0 000           222221    112234899999999999999999986431    2233445666542


Q ss_pred             cCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEE-----E--ecCCCeEEEEEE
Q psy670          201 ENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKII-----V--NEQDDTYEIICE  270 (540)
Q Consensus       201 ~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~-----~--~~~~~~~~~~l~  270 (540)
                      ... ..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+.........     .  .+......+.|.
T Consensus       143 ~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~  221 (270)
T 3qib_D          143 LKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLR  221 (270)
T ss_dssp             STT-CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEE
T ss_pred             ccc-ccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEE
Confidence            111 1134332 2233334456999999999988 6766 89999999988653221100     0  011122235678


Q ss_pred             EeCCCCCC-cEEEEEEEEcCCCCe
Q psy670          271 ITDPIGPD-SGTYRCNVKNEFGES  293 (540)
Q Consensus       271 i~~~~~~d-~g~y~C~~~~~~~~~  293 (540)
                      |.....+| .|.|+|.+.|.....
T Consensus       222 i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          222 VSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             EEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             EcHHHhccCCCeEEEEEEecCCCC
Confidence            88877777 999999999875543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.75  E-value=7e-18  Score=150.09  Aligned_cols=176  Identities=16%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeCC---Ee--e-c------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQGT---KV--I-E------------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~---~~--~-~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|.+.+. |.+.+.|+|..   ..  + .            ...++.+..     .....+|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~   83 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADRYLSISNIQ   83 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceEEEEEccCC
Confidence            4568899999999999888 88999999931   11  0 0            011332221     1123489999999


Q ss_pred             CCCCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670          172 KDDGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA  244 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~  244 (540)
                      .+|+|.|+|.+.+..+     .....+.|.|...+.   .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~  160 (218)
T 3s96_B           84 PEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPK---STPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN  160 (218)
T ss_dssp             GGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCC---BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCC---CCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence            9999999999998765     233455677764221   2555544333334445789999999988 6766 8999999


Q ss_pred             CEEeeccCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          245 DKLVKESSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      |..+........... .......+.|.|.....+|.|.|+|.|.|..+...
T Consensus       161 g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          161 GTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             TEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             CEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            998865322111111 11122234588888888899999999999876443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.75  E-value=2.5e-18  Score=150.71  Aligned_cols=161  Identities=19%  Similarity=0.367  Sum_probs=107.2

Q ss_pred             cCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          219 NESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                      +.+|++++|.|.+   |.+.+.|+|+|..+....       ...    ..|.|.+++.+|+|.|+|.+.+..   +..+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-------~~~----~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~   77 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------EDK----KKWNLGSNAKDPRGMYQCKGSQNK---SKPLQ   77 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-------SSC----CCEEEEEGGGCCEEEEEEESSSSC---CCCEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-------CCC----CeEEeCCCCcCCCEEEEEEecCCC---CeeEE
Confidence            3579999999998   788999999998875421       011    268899999999999999965432   22244


Q ss_pred             EEEeec------c------------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC
Q psy670          299 LNIEAE------A------------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ  354 (540)
Q Consensus       299 l~v~~~------~------------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~  354 (540)
                      +.+...      .                  .....++.+...+. ....+|+.++|.|.  +.|.+.+.|+++|..+..
T Consensus        78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~  154 (204)
T 1sy6_A           78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGG  154 (204)
T ss_dssp             EEEEC------------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESC
T ss_pred             EEEEEeccccccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCC
Confidence            444300      0                  00000222222222 22238999999999  789999999999998865


Q ss_pred             CCc-eEEEEEecCCeeEEEEEEcCC-CCCCCeeEEEEEEcCCeee-EEEEEEEE
Q psy670          355 TDR-ISWNVTLKGDKYHIRLEVKDP-RKEDTGLYKCNIKNFHGEL-NANLTLNI  405 (540)
Q Consensus       355 ~~~-~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  405 (540)
                      ... ..+..  .+.    .|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       155 ~~~~~~~~~--~~~----~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          155 DEDDKNIGS--DED----HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CTTCTTEEE--ETT----EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ccCCceEec--CCC----EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            321 11111  122    8999999 9999999999999999863 45555554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.75  E-value=1.1e-17  Score=149.23  Aligned_cols=179  Identities=16%  Similarity=0.267  Sum_probs=117.5

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec----------------CCCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE----------------DTGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~----------------~~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +.                ...++.+..+.   .....+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I   85 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN---SQSILYLQM   85 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET---TTTEEEEEE
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEEC---CCCeEEEEE
Confidence            34678999999999998765  6789999842  21   10                01334333221   112348999


Q ss_pred             cCCCCCCCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEE
Q psy670          168 NNPTKDDGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVK  240 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~  240 (540)
                      .+++.+|+|.|.|.+.+..+     .....+.|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  162 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVT  162 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC---CBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCC---CCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEE
Confidence            99999999999999998654     22233466665421   124555433333345679999999999984 888 999


Q ss_pred             EEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670          241 WFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL  297 (540)
Q Consensus       241 W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  297 (540)
                      |+++|..+.... .............+.|.|.++..+| |.|+|.|.|..+......
T Consensus       163 W~~~g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          163 WNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             EGGGTBCTTEEE-EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EecCCeEcceEe-ccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            999987653221 1111111112223478999999889 999999999887654443

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.75  E-value=1e-17  Score=152.30  Aligned_cols=181  Identities=14%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCc-----eEEEeCCEeecCC--------C-------ceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPD-----IIWYQGTKVIEDT--------G-------RIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~-----v~W~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ...+.+|++++|.|.+.+.|.+.     +.|+|++......        .       +..+....  .....++|.|.++
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sL~I~~v   89 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWR--LKSGDASLRLPGI   89 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHH--HTTTBCCEEESSC
T ss_pred             CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEecc--CCCCcEEEEeCCC
Confidence            34678999999999998887765     9999964321100        0       00000000  0011236999999


Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEe
Q psy670          171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLV  248 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l  248 (540)
                      +.+|+|.|+|.+.+..+.....+.|.|..       +|.+...+.. ....|+.+.|.|.+.+ +|.+ .+.|++++..+
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-------~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA-------SPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKF  161 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSS
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEec-------CCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccC
Confidence            99999999999999888878888888875       5555444432 2345778889999998 8888 99999998644


Q ss_pred             ecc------CceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee--eEEEEE
Q psy670          249 KES------SKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNA--NLNLNI  301 (540)
Q Consensus       249 ~~~------~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~l~v  301 (540)
                      ...      ...........+  ...+.|.+.....+|.|.|+|.|.|..+....  .+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          162 PHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            321      111111111222  23457888899999999999999998876444  444444

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.75  E-value=9.8e-18  Score=148.53  Aligned_cols=180  Identities=16%  Similarity=0.247  Sum_probs=120.0

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC---EE--ee---------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD---KL--VK---------ESSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~---~~--l~---------~~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      +...+....+.+|+.+.|.|.+.+.|.+.+.|++..   ..  +.         ...++....    ......|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~   79 (213)
T 3r06_A            4 MTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG----SGRDSSFTISSLE   79 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             eEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec----cCCEEEEEECCCC
Confidence            444466778889999999999999888999999832   11  10         012222221    1122479999999


Q ss_pred             CCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEECCEEc
Q psy670          276 GPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHEGKEL  352 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~~~~~  352 (540)
                      .+|+|.|+|.+.+..+. ......+.|...    ..+|.+...+.......|+.+.|.|.+.+.++  +.+.|+++|..+
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l  155 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRA----DAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEK  155 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEECCC----CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             cccCEEEEEecccCCceEEcCCceEEEecc----CCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCccc
Confidence            99999999999987543 233445666221    22666655454444557888999999998654  389999999988


Q ss_pred             cCCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          353 QQTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       353 ~~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ............  ++. ...+.|.|.....+|+|.|+|.|.|.....
T Consensus       156 ~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          156 RDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            653201111111  111 123478888888889999999999987543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.75  E-value=9.7e-18  Score=152.39  Aligned_cols=185  Identities=14%  Similarity=0.196  Sum_probs=115.2

Q ss_pred             CCceeecCCCCeEEEEEEecccCCCe-----EEEEeCCEEeeccCce------EEEEecCC--------CeEEEEEEEeC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRPE-----VKWFKADKLVKESSKI------KIIVNEQD--------DTYEIICEITD  273 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~~-----v~W~~~~~~l~~~~~~------~~~~~~~~--------~~~~~~l~i~~  273 (540)
                      .+....+..|+++.|.|.+.+.|.+.     +.|++++.........      ........        ......|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            34456677899999999998877665     9999964321100000      00000000        01123599999


Q ss_pred             CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEE
Q psy670          274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKE  351 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~  351 (540)
                      ++.+|+|.|+|.+.+..+.....+.|.|..       +|.+...+. .....|+.+.|.|.+.+ .|.+ .|.|+++|..
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~-------~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~  160 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVA-------SPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQK  160 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSS
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEec-------CCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCcc
Confidence            999999999999999877777777777765       555554443 23446778889999998 7888 9999999975


Q ss_pred             ccCCC-----ceEEEEE-ec-CC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee--eEEEEEEEE
Q psy670          352 LQQTD-----RISWNVT-LK-GD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE--LNANLTLNI  405 (540)
Q Consensus       352 ~~~~~-----~~~~~~~-~~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V  405 (540)
                      +....     ....... .. +. ...+.|.|.....+|.|.|+|.|.|..+.  ...++.|.|
T Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          161 FPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            54221     0001111 11 21 12357889999999999999999999886  445555665

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=3.6e-17  Score=149.35  Aligned_cols=172  Identities=18%  Similarity=0.306  Sum_probs=115.2

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec-------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE-------------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ..+.+|++++|.|.+.+.|  .+.+.|+|+  +..   +.             ...++.+....   .....+|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v~   86 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDT---SKNQVFLKMNSLQ   86 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEET---TTTEEEEEEESCC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEEC---CCCEEEEEECCCC
Confidence            4688999999999998875  678999985  221   10             12344333221   1223489999999


Q ss_pred             CCCCeEEEEEEEcCCc-------ee--EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEeccc
Q psy670          172 KDDGGNYRCNACNSIG-------ES--NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK  234 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  234 (540)
                      .+|+|.|+|.+.+..|       ..  ...+.|.|...+..        ...++.+...+....+.+|+.++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999998753       11  23456777653210        0012234444666778899999999999998


Q ss_pred             CCCeEEEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          235 PRPEVKWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       235 p~~~v~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      |.+.+.|++  ++..+..            ..++.....    .....|.|.+++.+|+|.|+|.+.|..
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS----GTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----BTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC----CCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            888999999  5543210            122222111    112479999999999999999999864

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.75  E-value=5.5e-17  Score=142.14  Aligned_cols=162  Identities=13%  Similarity=0.198  Sum_probs=111.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc----
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG----  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~----  187 (540)
                      ..+.+|++++|.|.+. .+.+.+.|+|+|..+.......  .  .........|.|.+++.+|+|.|+|.+.+...    
T Consensus        17 ~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~--~--~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~   91 (201)
T 1nkr_A           17 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG--E--HHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV   91 (201)
T ss_dssp             SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC--E--EETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCC
T ss_pred             CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee--e--cCCCCceEEEEeccCCcccCeEEEEeEecCCCCccc
Confidence            4578999999999995 4777999999987653211100  0  00112234899999999999999999986431    


Q ss_pred             -eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          188 -ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       188 -~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                       ..+..+.|.|....    .+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+.........   ..+...
T Consensus        92 ~~~s~~~~l~V~~~~----~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---~~~~~~  162 (201)
T 1nkr_A           92 SAPSDPLDIVIIGLY----EKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPK---VNGTFQ  162 (201)
T ss_dssp             CCCCCCEEEEEECSS----CCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEE---ETTEEE
T ss_pred             cCCCCCEEEEeeccC----CCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccc---cCCceE
Confidence             23455667776422    2456554444 35789999999999986 56789999999866432211111   112234


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      ..|.|.+++  |+|.|+|.+.+.
T Consensus       163 ~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          163 ADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEECC--SCEEEEEEEEET
T ss_pred             EEEEeCCcC--CCeeEEEEEEcC
Confidence            579999998  999999999865

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.75  E-value=2.8e-17  Score=144.08  Aligned_cols=172  Identities=16%  Similarity=0.308  Sum_probs=114.7

Q ss_pred             CccccCCCeEEEEEEEe----ecCCCceEEEeCCEeecC------------CCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLE----ASPMPDIIWYQGTKVIED------------TGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~----~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ++.+.+|++++|.|.+.    +.|.+.+.|++++..+..            ..+..+.   ...   ..+|.|.+++.+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~---~~~---~~~L~I~~v~~~D   76 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITN---NLSIVILALRPSD   76 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STT---TTEEEECSCCGGG
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc---cCC---CcEEEEecccchh
Confidence            35678999999999984    346678999999887621            1111111   011   1279999999999


Q ss_pred             CeEEEEEEEcCCcee-----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEe
Q psy670          175 GGNYRCNACNSIGES-----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLV  248 (540)
Q Consensus       175 ~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l  248 (540)
                      +|.|+|.+.+..+..     ...+.|.|.....    .|.+..    .....|+.+.|.|.+. ++|.+.|.|+++|..+
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~----~p~~~~----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l  148 (201)
T 1dr9_A           77 EGTYECVVLKYEKDAFKREHLAEVTLSVKADFP----TPSISD----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEEL  148 (201)
T ss_dssp             CEEEEEEEEECCTTSCEEEEEEEEEEEEECCCC----CCEEEE----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEE
T ss_pred             CeEEEEEEEcCCCCccccccccEEEEEEcCCCC----CCceEe----ccCCCCCeEEEEEecCCccCCCEEEEEECCEEC
Confidence            999999999976543     3566777764221    233321    2224589999999995 8999999999999888


Q ss_pred             eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                      ..... ........+.+.. ..+..+...|.|.|+|.|.|..+..+..+.
T Consensus       149 ~~~~~-~~~~~~~~~~~~~-~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          149 NAINT-TVSQDPETELYAV-SSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             CCSEE-EEEECTTTCCEEE-EEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             ccccc-eEEecCCCcEEEE-EEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            75432 2222222233222 122333457999999999999887766544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.75  E-value=6.3e-17  Score=146.92  Aligned_cols=185  Identities=16%  Similarity=0.325  Sum_probs=121.1

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee-----------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI-----------------EDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.|  .+.+.|+|++  ..+                 ....++.+....   .....+|.|.+
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~   87 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDN---SKNTLYLQMNS   87 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeC---CCCEEEEEECc
Confidence            45788999999999998877  5789999842  111                 012344443321   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCce--eEEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCCCeE
Q psy670          170 PTKDDGGNYRCNACNSIGE--SNANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV  239 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v  239 (540)
                      ++.+|+|.|+|.+.+..+.  ....+.|.|...+..        ...++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            9999999999999987332  223456666643110        012344555566777889999999999999888899


Q ss_pred             EEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEe
Q psy670          240 KWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIE  302 (540)
Q Consensus       240 ~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~  302 (540)
                      .|++  ++..+..            ..++...  .  .....+|.|.+++.+|+|.|+|.+.+..... .....|.|.
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGS--G--SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEE--C--SSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEEe--c--CCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            9999  5543310            1122221  1  1123479999999999999999999854322 233455554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=4.9e-17  Score=147.62  Aligned_cols=186  Identities=13%  Similarity=0.272  Sum_probs=121.3

Q ss_pred             ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ....+.+|++++|.|.+.+.|  .+.+.|+++.  ..+.                 ...++.+.....  ....+|.|.+
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~   87 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNS--KNTLYLQMNS   87 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETT--TTEEEEEECS
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCC--CCEEEEEECc
Confidence            346788999999999999876  5789999842  1110                 112333322211  1234799999


Q ss_pred             CCCCCcEEEEEEEEcCCCC--eeeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE
Q psy670          274 PIGPDSGTYRCNVKNEFGE--SNANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI  343 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~--~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i  343 (540)
                      ++.+|+|.|+|.+.+..+.  ......|.|...+.        ....++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            9999999999999987322  22334566654211        0012445555666777889999999999999998999


Q ss_pred             EEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEE
Q psy670          344 VWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIE  406 (540)
Q Consensus       344 ~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  406 (540)
                      .|++  ++..+.            ...++..  ...  ....+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~--~~~--~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSG--SGS--GTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEE--ECS--SSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEE--ecC--CCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            9999  554331            1122222  111  223479999999999999999999864322 233455554

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.74  E-value=1.1e-17  Score=147.94  Aligned_cols=174  Identities=14%  Similarity=0.264  Sum_probs=114.1

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec----------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE----------------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ..+.+|++++|.|.+.+.+  .+.+.|+|+  +....                ...++.+.....   ...++|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v~   86 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS---KNQYYLDLNSVT   86 (210)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG---GTEEEEEECSCC
T ss_pred             EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC---CCEEEEEECCCC
Confidence            4678999999999998765  478999985  22210                123444433211   123489999999


Q ss_pred             CCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEee
Q psy670          172 KDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVK  249 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~  249 (540)
                      .+|+|.|.|.+.+.. .......|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus        87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~  162 (210)
T 3d9a_H           87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG  162 (210)
T ss_dssp             GGGCEEEEEEETTSS-CBCCCEEEEECCCC---CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             cccCEEEEEEEecCc-ccccceEEEeccCC---CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccc
Confidence            999999999998863 11223456665311   124555433333446789999999999985 887 999999987542


Q ss_pred             ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          250 ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ........ ........+.|.|.++..+| |.|+|.|.|..+...
T Consensus       163 ~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  205 (210)
T 3d9a_H          163 VHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  205 (210)
T ss_dssp             EEECCCEE-ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred             eEEcCCcc-CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            11111111 11111233578999988877 999999999887654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.74  E-value=8.1e-17  Score=146.75  Aligned_cols=181  Identities=17%  Similarity=0.308  Sum_probs=121.6

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      |....+.+|++++|.|.+.+.|  .+.+.|+++  +..+.                 ...++.+.....  .....|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~   84 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKP--SSTAYMQLS   84 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETT--TTEEEEEEC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecC--CCEEEEEEC
Confidence            4456788999999999998875  678999994  22210                 012333322211  123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC-----eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC-----e
Q psy670          273 DPIGPDSGTYRCNVKNEFGE-----SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-----E  342 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-----~  342 (540)
                      +++.+|+|.|.|.+.+..|.     ....+.|.|..       ++.+...+....+.+|++++|.|.+.+.|.+     .
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc-------cccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            99999999999999998652     12334555543       4556666777788999999999999988765     8


Q ss_pred             EEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEEEEEE
Q psy670          343 IVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNIEM  407 (540)
Q Consensus       343 i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~  407 (540)
                      +.|++  +|..+.            ...++...  ..+.  ..+|.|.+++.+|+|.|+|.|.|.... ...-..|.|..
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGS--GSGT--DFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEE--ccCC--EEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            99999  554331            01233221  1121  337999999999999999999985432 22334455543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=2.4e-17  Score=148.66  Aligned_cols=184  Identities=13%  Similarity=0.219  Sum_probs=121.9

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee---------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK---------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      .+...+....+.+|+++.|.|.+.+.+.+.+.|++..  ..   +.         ...++.....    .....|.|.++
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v  101 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS----GTDFTLTISSL  101 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSC
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC----CCEEEEEECCC
Confidence            3444566678889999999999999888899999842  11   10         0122222211    12347999999


Q ss_pred             CCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cC-CCeEEEEECCEE
Q psy670          275 IGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KP-MPEIVWFHEGKE  351 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p-~~~i~W~~~~~~  351 (540)
                      +.+|+|.|+|.+.+..+. ......+.|...    ..+|.+...+.......|+.++|.|.+.+ .| .+.+.|+++|..
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~  177 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  177 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECC----CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEecC----CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence            999999999999886653 233345565441    12555554333333446889999999998 45 589999999998


Q ss_pred             ccCCCceEEEEE--ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          352 LQQTDRISWNVT--LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       352 ~~~~~~~~~~~~--~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      +...........  .++. ...+.|.|.....+|+|.|+|.|.|.......+
T Consensus       178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT  229 (237)
T ss_dssp             CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred             CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence            875320111111  1111 123478999999999999999999987654433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.74  E-value=1.9e-17  Score=147.03  Aligned_cols=175  Identities=18%  Similarity=0.219  Sum_probs=114.2

Q ss_pred             CccccCCCeEEEEEEEee-cC-CCceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEA-SP-MPDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p-~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|.+.+ .+ .+.+.|+|++  ..+.            ...++....     ....++|.|.+++.+|
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D   83 (216)
T 2xzc_L            9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-----SGTSATLGITGLQTGD   83 (216)
T ss_dssp             EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGG
T ss_pred             cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-----cCCEEEEEECCCCccc
Confidence            356889999999999533 32 5789999943  2110            112333321     1123489999999999


Q ss_pred             CeEEEEEEEcCCc--eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeec
Q psy670          175 GGNYRCNACNSIG--ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKE  250 (540)
Q Consensus       175 ~G~Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~  250 (540)
                      +|.|+|.+.+..+  .......|.|....    .+|.+...+.......|+.++|.|.+.+ .|.+ .|.|+++|..+..
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  159 (216)
T 2xzc_L           84 EADYYCGTWDSSLNPVFGGGTKLEIKRTV----AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  159 (216)
T ss_dssp             CEEEEEEEECTTSCEEEBCCEEEEECCCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CEEEEEEEEeCCCcceECCCEEEEEcCCC----CCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence            9999999999875  22234456664321    2555544222222235889999999988 5654 8999999998765


Q ss_pred             cCceEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          251 SSKIKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       251 ~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ...... ......+  ...+.|.|..+..+|+|.|+|.|.|......
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          160 NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             SEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            411111 1111222  2345799999999999999999999765433

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.74  E-value=9.7e-18  Score=151.29  Aligned_cols=175  Identities=17%  Similarity=0.217  Sum_probs=117.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---e---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---I---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.+.+.+.|+|++  ..   +         ....++....     .....+|.|.+++.+|+|
T Consensus        33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G  107 (237)
T 3sob_L           33 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFA  107 (237)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             eEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc-----CCCEEEEEECCCChhhCe
Confidence            356889999999999988888899999832  11   0         1123333321     112348999999999999


Q ss_pred             EEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCeEEEEeCCEEeeccC-
Q psy670          177 NYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPEVKWFKADKLVKESS-  252 (540)
Q Consensus       177 ~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~l~~~~-  252 (540)
                      .|+|.+.+..+. ......+.|...    ..+|.+...+......+|+.++|.|.+.+ .| .+.+.|+++|..+.... 
T Consensus       108 ~Y~C~~~~~~~~~~~~~~~l~V~~~----~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~  183 (237)
T 3sob_L          108 TYYCQQSYTTPPTFGQGTKVEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ  183 (237)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEECC----CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred             EEEEeeccCCceEEcCcEEEEEecC----CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence            999999887643 233345555431    12565554444333445889999999988 55 58999999999886532 


Q ss_pred             ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          253 KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       253 ~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ..........+  ...+.|.|.....+|+|.|+|.|.|......
T Consensus       184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            11111111222  2345788999999999999999999865443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.73  E-value=7.2e-17  Score=145.62  Aligned_cols=178  Identities=12%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEee---------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVK---------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~---------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ...+..+.+.+|++++|.|. .+.|.+.+.|+++  +..+.               ...++.+..   .......|.|.+
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~   79 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR---PSQENFSLILEL   79 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC---CSSSBCEEEESS
T ss_pred             eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc---cCCceEEEEEec
Confidence            33456677889999999999 6788899999995  21110               011222221   011123799999


Q ss_pred             CCCCCcEEEEEEEEcCCCCe-----eeeEEEEEeeccCCC-----CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeE
Q psy670          274 PIGPDSGTYRCNVKNEFGES-----NANLNLNIEAEAEPE-----GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEI  343 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~-----~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i  343 (540)
                      ++.+|+|.|+|.+.+..+..     .....+.|...+...     ...+.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus        80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i  159 (238)
T 2p1y_A           80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF  159 (238)
T ss_dssp             CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred             CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence            99999999999999875421     123455555421000     00014455566777899999999999999999999


Q ss_pred             EEEECCE--E---cc---------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          344 VWFHEGK--E---LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       344 ~W~~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      .|++++.  .   +.         ...++....  +......+|.|.+++.+|+|.|+|.|.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFF--NKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEe--cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999641  1   10         112222211  111223489999999999999999999973

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=3.5e-17  Score=149.45  Aligned_cols=173  Identities=18%  Similarity=0.263  Sum_probs=113.9

Q ss_pred             eeecCCCCeEEEEEEecccC--CCeEEEEeC--CEE---ee-------------ccCceEEEEecCCCeEEEEEEEeCCC
Q psy670          216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKL---VK-------------ESSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~---l~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      ...+.+|++++|.|.+.+.|  .+.+.|+++  +..   +.             ...++.+....  ......|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v~   86 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDT--SKNQVFLKMNSLQ   86 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEET--TTTEEEEEEESCC
T ss_pred             CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEEC--CCCEEEEEECCCC
Confidence            34678899999999999875  678999985  221   10             01233332221  1123479999999


Q ss_pred             CCCcEEEEEEEEcCCC-------C--eeeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670          276 GPDSGTYRCNVKNEFG-------E--SNANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK  338 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~-------~--~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~  338 (540)
                      .+|+|.|+|.+.+..|       .  ......|.|...+..        ...++.+...+....+.+|+.++|.|.+.+.
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999999754       1  113345666543200        0011223334556668899999999999998


Q ss_pred             CCCeEEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          339 PMPEIVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       339 p~~~i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      |.+.+.|++  +|..+.            ...++...  ..+  ...+|.|.+++.+|+|.|+|.|.|..
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--GSG--TDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EEB--TEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEe--cCC--CEEEEEECCCChhhCEEEEEEEeCCC
Confidence            888999999  554331            01233322  111  13389999999999999999999975

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.73  E-value=1.3e-16  Score=145.40  Aligned_cols=178  Identities=13%  Similarity=0.238  Sum_probs=120.2

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.|  .+.+.|+|+  +..+.                 ...++.+....   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   85 (256)
T 1nqb_A            9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDK---PSSTAYMQLSS   85 (256)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEec---CCCEEEEEECc
Confidence            45788999999999998775  578999994  22210                 12344433221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCce-----eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-----eE
Q psy670          170 PTKDDGGNYRCNACNSIGE-----SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-----EV  239 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~v  239 (540)
                      ++.+|+|.|.|.+.+..+.     ....+.|.|..       ++.+...+....+.+|++++|.|.+.+.|.+     .+
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v  158 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYL  158 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecc-------cccEEecCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence            9999999999999987552     22345666663       4555556777788999999999999987765     89


Q ss_pred             EEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEe
Q psy670          240 KWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIE  302 (540)
Q Consensus       240 ~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~  302 (540)
                      .|++  ++..+..            ..++.....    .....|.|.+++.+|+|.|+|.+.+.... ......|.|.
T Consensus       159 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          159 EWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS----GTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc----CCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            9999  5543310            112222111    11247999999999999999999875332 1223445554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.73  E-value=3.7e-17  Score=144.89  Aligned_cols=169  Identities=15%  Similarity=0.249  Sum_probs=111.7

Q ss_pred             CccccCCCeEEEEEEEeec-------CCCceEEEeCCEeec-----------------CCCceEEEEeecCcceEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS-------PMPDIIWYQGTKVIE-----------------DTGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-------p~~~v~W~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      ...+.+|++++|.|.+.+.       +.+.+.|+|++....                 ...++.+..+.   .....+|.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~   85 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV---QKKNCSLS   85 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG---GGTBCCEE
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccC---CCCeEEEE
Confidence            4567899999999999643       466899999865210                 11233322211   11123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCcee----EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc----CCCe
Q psy670          167 INNPTKDDGGNYRCNACNSIGES----NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK----PRPE  238 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~  238 (540)
                      |.+++.+|+|.|.|.+.+..+..    ...+.|.|...+.    .|.+.. +.  .+.+|+.++|.|.+.+.    |.+.
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~  158 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE----KPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLT  158 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC----CCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC----CCceec-Cc--cccCCCeEEEEEEeccCCCCCCCce
Confidence            99999999999999999876332    1467777775322    444433 21  26689999999999763    7889


Q ss_pred             EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670          239 VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL  299 (540)
Q Consensus       239 v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  299 (540)
                      +.|++++..+....          ......|.|..+..+|+|.|+|.|.|..+.......+
T Consensus       159 v~W~~~~~~~~~~~----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          159 FSWTGNALSPLDPE----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             EEEESSTTSSSCSS----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             EEEeCCCCccCCCC----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence            99999986532211          0112378999999999999999999976544333333

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.73  E-value=2.7e-17  Score=151.43  Aligned_cols=209  Identities=17%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             CCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEe
Q psy670          171 TKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLV  248 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l  248 (540)
                      ++.|.+.|.|.+.+..|.......+             .+...+..+.+.+|++++|.|.+.+ +.+.+.|++.  +...
T Consensus         4 ~~~~~~~y~~~~~~~~g~~~~~~~~-------------~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~   69 (270)
T 3qib_D            4 ERADLIAYLKQATKGGGGSGGGGGM-------------KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEF   69 (270)
T ss_dssp             ------------------------C-------------CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCE
T ss_pred             hhhhHHHHHHHHhccCCccccccce-------------eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCc
Confidence            5678999999998876654333222             2334455677889999999999865 6778999982  2111


Q ss_pred             ---ec-cC------------ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC----CeeeeEEEEEeeccCCC
Q psy670          249 ---KE-SS------------KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG----ESNANLNLNIEAEAEPE  308 (540)
Q Consensus       249 ---~~-~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~l~v~~~~~~~  308 (540)
                         .. ..            ++....   .......|.|.+++.+|+|.|.|.+.+...    .......+.|...... 
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-  145 (270)
T 3qib_D           70 KFLINFQNQEVLQQIDMTEKRFSAEC---PSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKN-  145 (270)
T ss_dssp             EEEEEEETTEEEEECHHHHHHEEEEC---CTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTT-
T ss_pred             EEEEEECCCCceecCCccCCcEEEEe---CCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccc-
Confidence               00 00            222211   112235899999999999999999996432    2223345666542211 


Q ss_pred             CCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCCceEE----EEE--ecCCe-eEEEEEEcCC
Q psy670          309 GDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTDRISW----NVT--LKGDK-YHIRLEVKDP  378 (540)
Q Consensus       309 ~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~----~~~--~~~~~-~~~~L~i~~~  378 (540)
                      ..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+........    ...  .++.. ..+.|.|...
T Consensus       146 ~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~  225 (270)
T 3qib_D          146 VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSAT  225 (270)
T ss_dssp             CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHH
T ss_pred             ccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHH
Confidence            1134433 2233333456999999999998 6666 8999999998865322100    000  11211 2246888888


Q ss_pred             CCCC-CeeEEEEEEcCCeee
Q psy670          379 RKED-TGLYKCNIKNFHGEL  397 (540)
Q Consensus       379 ~~~d-~G~Y~C~a~n~~g~~  397 (540)
                      ..+| .|.|+|.|.|.....
T Consensus       226 ~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          226 FWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             HHHSTTCEEEEEEEECCBCT
T ss_pred             HhccCCCeEEEEEEecCCCC
Confidence            7777 999999999976543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.73  E-value=1.3e-18  Score=154.02  Aligned_cols=178  Identities=13%  Similarity=0.201  Sum_probs=118.0

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeC--CEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCc
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDS  279 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  279 (540)
                      +....+.+|+.++|.|.+.+.|.+.+.|+++  +..+..            ..++.....    .....|.|.+++.+|+
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~   81 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS----GTTATLTISGAQPEDE   81 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE----TTEEEEEETTCCGGGC
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEee----CCEEEEEECcCCcccC
Confidence            5667788999999999998887778999984  322210            122222221    1124799999999999


Q ss_pred             EEEEEEEEcCCC-Ce--eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccC
Q psy670          280 GTYRCNVKNEFG-ES--NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQ  354 (540)
Q Consensus       280 g~y~C~~~~~~~-~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~  354 (540)
                      |.|+|.+.+..+ ..  .....+.|...+   ..+|.+...+....+.+|+.++|.|.+.+. |. +.+.|+++|..+..
T Consensus        82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  158 (212)
T 1nfd_E           82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGP---KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND  158 (212)
T ss_dssp             SEEEEEEEETTTTEEEECCCEEEEEECCC---CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             EEEEEEEEcccCcccccCCceEEEEccCC---CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence            999999997322 11  223445554321   125666554433334579999999999987 54 79999999998865


Q ss_pred             CCceEEEEE-ecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          355 TDRISWNVT-LKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       355 ~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ......... .++....+.|.|.++..+|+|.|+|.|.|..+...
T Consensus       159 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  203 (212)
T 1nfd_E          159 GVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE  203 (212)
T ss_dssp             SCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             CeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence            432110000 11111234699999999999999999999876543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.73  E-value=1.9e-17  Score=146.28  Aligned_cols=178  Identities=13%  Similarity=0.194  Sum_probs=115.1

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee----------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK----------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~----------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|+++  +..+.                ...++.+.....  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~   84 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS--KNQYYLDLNS   84 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG--GTEEEEEECS
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC--CCEEEEEECC
Confidence            3345678899999999998865  478999985  22211                012333322211  1234799999


Q ss_pred             CCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy670          274 PIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKE  351 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~  351 (540)
                      ++.+|+|.|.|.+.+.. .......+.|....   ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..
T Consensus        85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             CCGGGCEEEEEEETTSS-CBCCCEEEEECCCC---CBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCcccCEEEEEEEecCc-ccccceEEEeccCC---CCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            99999999999999863 22233456665321   124555433322335689999999999986 888 9999999876


Q ss_pred             ccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          352 LQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       352 ~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      +........  ..++. ...+.|.|..+..+| |.|+|.|.|..|.....
T Consensus       161 ~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          161 SGVHTFPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             TTEEECCCE--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cceEEcCCc--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            432111111  11111 123479999888866 99999999998876543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.73  E-value=3.4e-17  Score=145.41  Aligned_cols=177  Identities=14%  Similarity=0.188  Sum_probs=115.3

Q ss_pred             CceeecCCCCeEEEEEEe-cccC-CCeEEEEeCC--EEee----------c--cCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670          214 PRIIPNESGTLIQMKCKC-SAKP-RPEVKWFKAD--KLVK----------E--SSKIKIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~-~~~p-~~~v~W~~~~--~~l~----------~--~~~~~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      |....+.+|++++|.|.+ .+.+ .+.+.|++++  ..+.          .  ..++.....    .....|.|.+++.+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~   82 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS----GTSATLGITGLQTG   82 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE----TTEEEEEECSCCGG
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc----CCEEEEEECCCCcc
Confidence            566778899999999995 4443 5789999943  2110          0  112222211    11247999999999


Q ss_pred             CcEEEEEEEEcCCC--CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEcc
Q psy670          278 DSGTYRCNVKNEFG--ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQ  353 (540)
Q Consensus       278 d~g~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~  353 (540)
                      |+|.|.|.+.+..+  .......+.|...    ..+|.+...+.......|+.++|.|.+.+ .|.+ .|.|+++|..+.
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~----~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~  158 (216)
T 2xzc_L           83 DEADYYCGTWDSSLNPVFGGGTKLEIKRT----VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS  158 (216)
T ss_dssp             GCEEEEEEEECTTSCEEEBCCEEEEECCC----CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCEEEEEEEEeCCCcceECCCEEEEEcCC----CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence            99999999999876  2223345666431    12555554322222335889999999998 5554 899999999886


Q ss_pred             CCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          354 QTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       354 ~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ...........  ++. ...+.|.|..+..+|+|.|+|.|.|......
T Consensus       159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            54111111111  111 2244799999999999999999999875543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.73  E-value=5.8e-17  Score=145.75  Aligned_cols=171  Identities=11%  Similarity=0.055  Sum_probs=118.6

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce--eE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE--SN  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~  190 (540)
                      .+.+|++++|.|.+.+ +...+.|+|+|..+.....      ..........|.|.+++.+|+|.|+|.+.+..+.  .+
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~------~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S   89 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   89 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC------SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc------cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCC
Confidence            6789999999999853 4568999999987642100      0001112338999999999999999999876443  24


Q ss_pred             EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEE
Q psy670          191 ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       191 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+.|.|.+..    ..|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+...    ...    ......|.
T Consensus        90 ~~~~L~V~~~~----~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~----~~~----~~~~~~l~  155 (242)
T 1p6f_A           90 NLLDLVVTEMY----DTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ----RGY----GKVQAEFP  155 (242)
T ss_dssp             CCEEEEEECCS----CCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE----EEE----CSSEEEEE
T ss_pred             cceEEEeeccc----CCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc----ccC----CCceEEEE
Confidence            55677776422    145554444 3456789999999999764 4589999998765431    111    11234799


Q ss_pred             EeCCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeec
Q psy670          271 ITDPIGPDSGTYRCNVKNEF---GESNANLNLNIEAE  304 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~  304 (540)
                      |.+++.+|+|.|+|.+.+..   ...+..+.|.|...
T Consensus       156 I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          156 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD  192 (242)
T ss_dssp             EEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred             eCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence            99999999999999999864   23456677777753

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.73  E-value=1.4e-16  Score=147.10  Aligned_cols=181  Identities=18%  Similarity=0.260  Sum_probs=118.4

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE-----Eeec---------cCceEEEEecCCCeEEEEEEEe
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK-----LVKE---------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-----~l~~---------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      .+.+...+..+.+.+|++++|.|.+.+.|.+.+.|++++.     .+..         ..++.....    .....|.|.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~   87 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS----GTDFTLTIS   87 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEES
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc----CCeEEEEEc
Confidence            3445556777889999999999999998888999998542     1111         122222211    112379999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCC-------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCe
Q psy670          273 DPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEP-------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPE  342 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~  342 (540)
                      +++.+|+|.|.|.+.+..+. ......|.|...+..       ...++..+..+....+.+|+.++|.|.+.+.+  .+.
T Consensus        88 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~  167 (276)
T 3auv_A           88 SLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYW  167 (276)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             cCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCE
Confidence            99999999999999987543 233345665543210       00122334445567788999999999999876  589


Q ss_pred             EEEEECC--EEc-----------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          343 IVWFHEG--KEL-----------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       343 i~W~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      +.|++++  ...                 ....++...  .++.....+|.|.+++.+|+|.|+|.|.|.
T Consensus       168 v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          168 IHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTIS--ADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEE--ecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            9999963  111                 011233322  221222348999999999999999999997

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.73  E-value=2e-16  Score=136.42  Aligned_cols=160  Identities=11%  Similarity=0.114  Sum_probs=113.3

Q ss_pred             ccccCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+..|++++|.|.+ +.|.+  .|.|++.+..+   .+....       .....|.|.+++.+|+|.|.|.+.+..+..
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~   85 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSD-------TGRSVLTVRNASLSAAGTRVCVGSCGGRTF   85 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEE-------SSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEec-------CCccEEEECccCcccCceEEEEEEeCCCce
Confidence            578899999999999 88888  99999854333   122111       112389999999999999999999998888


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC----CeEEEEeCCEEeeccCceE--EEE----
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR----PEVKWFKADKLVKESSKIK--IIV----  258 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~----~~v~W~~~~~~l~~~~~~~--~~~----  258 (540)
                      ...+.|.|+.       +|........ ....|+.+ |.|.+.+ +|.    +++.|++++..+.......  ...    
T Consensus        86 ~~~~~ltV~~-------~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~  156 (210)
T 1gsm_A           86 QHTVQLLVYA-------FPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE  156 (210)
T ss_dssp             EEEEEEEEEB-------CCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred             EEEEEEEEEe-------cCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence            8899999986       4433221111 56678888 9999988 574    4899999999985432111  100    


Q ss_pred             ----ecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          259 ----NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       259 ----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                          ........+++.+.....++.+.|+|.|.+..-
T Consensus       157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence                011223345666767777777899999998643

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.73  E-value=1.8e-16  Score=144.70  Aligned_cols=183  Identities=15%  Similarity=0.298  Sum_probs=121.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecc--cCCCeEEEEeCC--EEee---c--------------cCceEEEEecCCCeE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--KLVK---E--------------SSKIKIIVNEQDDTY  265 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~l~---~--------------~~~~~~~~~~~~~~~  265 (540)
                      ++.+...+..+.+.+|++++|.|.+.+  .+.+.+.|++..  ..+.   .              ..++.+.....  ..
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~   83 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS--AN   83 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT--TT
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecC--CC
Confidence            455666777888999999999999987  367789999732  1110   0              11233322221  12


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcC------------CCCeeeeEEEEEeeccCCC--------CCCCeEEeCCceEEeeC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNE------------FGESNANLNLNIEAEAEPE--------GDPPTFIEKPKIRSEQG  325 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~------------~~~~~~~~~l~v~~~~~~~--------~~~p~~~~~~~~~~~~~  325 (540)
                      ...|.|.+++.+|+|.|.|.+.+.            .+.......|.|...+...        ..++.+...+....+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence            347999999999999999999986            2223344556665432110        11455666777888999


Q ss_pred             CCeEEEEEEEEccCC-CeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          326 GKLVVMECKVKAKPM-PEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       326 g~~v~l~C~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      |++++|.|.+.+.+. +.+.|++.  +..+.            ...++...  .++.  ..+|.|.+++.+|+|.|.|.|
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~~  239 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS--GSGT--DFTLTITRVEPEDFALYYCQV  239 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE--ccCC--EEEEEECCCCHhHCEEEEEEE
Confidence            999999999998776 89999983  22211            12233322  2222  237999999999999999999


Q ss_pred             EcCCe
Q psy670          391 KNFHG  395 (540)
Q Consensus       391 ~n~~g  395 (540)
                      .|...
T Consensus       240 ~~~~~  244 (256)
T 3juy_B          240 YGASS  244 (256)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            98543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.73  E-value=1.5e-17  Score=151.03  Aligned_cols=184  Identities=15%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEe----------------CCEEeecc---CceEEEEecCCCeEEEEEEE
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK----------------ADKLVKES---SKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----------------~~~~l~~~---~~~~~~~~~~~~~~~~~l~i  271 (540)
                      ...+..+.+.+|+.+.|.|.+.+.+.+.+.|++                ++......   .++.+....   .....|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I   81 (246)
T 4dzb_B            5 SQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS---LTLSTLTV   81 (246)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE---TTEEEEEE
T ss_pred             EECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC---CCEEEEEE
Confidence            344566778899999999999998899999998                22222111   233332211   12347999


Q ss_pred             eCCCCCCcEEEEEEEEcCCC----CeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEccCCC--eEE
Q psy670          272 TDPIGPDSGTYRCNVKNEFG----ESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKAKPMP--EIV  344 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~  344 (540)
                      .+++.+|+|.|.|.+.+..+    .......+.|...... ..+|.+. ..+....+.+|+.++|.|.+.+.|++  .+.
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  160 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  160 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCc-ccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence            99999999999999987543    1223445666541111 1144443 33444445569999999999987654  899


Q ss_pred             EEECCEEccCCCceEEEEE------ecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCCeeeE
Q psy670          345 WFHEGKELQQTDRISWNVT------LKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFHGELN  398 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~~------~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~  398 (540)
                      |+++|..+...........      .++.. ..+.|.|.....+| .|.|+|.|.|......
T Consensus       161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            9999998865322110000      01211 12468888888888 9999999999865443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=1e-16  Score=144.89  Aligned_cols=176  Identities=15%  Similarity=0.248  Sum_probs=117.6

Q ss_pred             eccCCceeecCCCCeEEEEEEecccC----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEE
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKP----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      +...+....+.+|+.++|.|.+.+.|    .+.+.|+++.  ..   +..         ..++.....    ....+|.|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I   79 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS----RTDFTLII   79 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEE
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec----CCeEEEEE
Confidence            34456677888999999999999887    7789999952  21   110         112222111    11237999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--CeEEEEEC
Q psy670          272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE  348 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~  348 (540)
                      .+++.+|+|.|+|.+.+..+. ......|.|...+.. ..++.+...+....+.+|+.++|.|.+.+.|.  +.+.|+++
T Consensus        80 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~-~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           80 DPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSG-GGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCC-CCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             cCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCC-CCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            999999999999999987654 334456666553211 11333444566677889999999999999874  58999995


Q ss_pred             --CEEcc-----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          349 --GKELQ-----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       349 --~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                        +..+.                 ...++..  ..+......+|.|.+++.+|+|.|+|.|.+
T Consensus       159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          159 RPEQGLEWIGRIDPANGNSKYVPKFQGKATI--TADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CTTSCCEEEEEEETTTTEEEECGGGTTTEEE--EEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CCCCCcEEEEEEcccCCccccCccccccEEE--EEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence              22210                 1122222  222222334899999999999999999985

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.72  E-value=6.3e-18  Score=150.11  Aligned_cols=175  Identities=14%  Similarity=0.173  Sum_probs=110.9

Q ss_pred             ccCCCeEEEEEEEeec---CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEAS---PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+|++++|.|.+.+.   |. +.|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            7899999999999877   33 6899999998775432111111111112234589999999999999999999986643


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDT--Y  265 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~--~  265 (540)
                      .....+...   .....+|.+...+.......|+.+.|.|.+.| +|.+ .|.|+++|..+.......... ..++.  .
T Consensus       103 ~~~~~v~~~---~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~-~~~gt~~~  178 (218)
T 2rgs_A          103 PIERTISKI---KGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVL-DSDGSYFI  178 (218)
T ss_dssp             CEEEEECCC---CCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE-CTTSCEEE
T ss_pred             cceEEEeec---CCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEE-CCCCCEEE
Confidence            111122110   01113565543333222235999999999998 6765 899999999874322111111 12222  2


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+.|.+.....+|.|.|+|.|.|....
T Consensus       179 ~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          179 YSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            335666665555789999999997654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.72  E-value=1.1e-16  Score=145.62  Aligned_cols=179  Identities=15%  Similarity=0.266  Sum_probs=115.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCE-----Eee---------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADK-----LVK---------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-----~l~---------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ..+...+..+.+.+|+.++|.|.+.+.|.+.+.|++...     .+.         ...++.....    .....|.|.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~   80 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS----GTDYSLTISN   80 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESS
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC----CCEEEEEEcc
Confidence            344556677888899999999999999989999998531     110         0122221111    1123799999


Q ss_pred             CCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCC------------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-
Q psy670          274 PIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEP------------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-  339 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~------------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-  339 (540)
                      ++.+|+|.|.|.+.+..+.. .....+.|...+..            ...++.++..+....+.+|+.++|.|.+.+.+ 
T Consensus        81 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  160 (250)
T 3esu_F           81 LEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAF  160 (250)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTG
T ss_pred             CChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcc
Confidence            99999999999999865542 23345555442100            00122333345556788999999999998876 


Q ss_pred             -CCeEEEEEC--CEEccC-----------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          340 -MPEIVWFHE--GKELQQ-----------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       340 -~~~i~W~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                       .+.+.|+++  +..+..                 ..++...  .++.....+|.|.+++.+|+|.|+|.|.+
T Consensus       161 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          161 SSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLT--ADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             GGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEE--ecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence             789999997  432211                 1223222  22222344799999999999999999997

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.72  E-value=5.3e-18  Score=148.63  Aligned_cols=162  Identities=20%  Similarity=0.341  Sum_probs=105.6

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      .+.+|++++|.|.+   |.+.|.|+|+|..+.....         ..   .+|.|.+++.+|+|.|+|.+.+.. .  ..
T Consensus        14 ~~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~---------~~---~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~   75 (204)
T 1sy6_A           14 DYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTE---------DK---KKWNLGSNAKDPRGMYQCKGSQNK-S--KP   75 (204)
T ss_dssp             CCCSSSEEEEEECS---CSSEEEEEETTEEEEEEES---------SC---CCEEEEEGGGCCEEEEEEESSSSC-C--CC
T ss_pred             eecCCCeEEEEEcC---CCCEEEEEECCEECCCCCC---------CC---CeEEeCCCCcCCCEEEEEEecCCC-C--ee
Confidence            35689999999998   7789999999988753200         01   179999999999999999965432 2  22


Q ss_pred             EEEEEecC------c------------------CCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEe
Q psy670          193 IALNFQGG------E------------------NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLV  248 (540)
Q Consensus       193 ~~l~v~~~------~------------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l  248 (540)
                      +.|.+...      .                  .....++.+...+.. ...+|+.++|.|.  +.|.+.+.|++++..+
T Consensus        76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK-VSISGTTVILTCP--QYPGSEILWQHNDKNI  152 (204)
T ss_dssp             EEEEEEC------------------------------------CCCCE-EEEETTEEEEECS--CCCSSCEEEEETTEEE
T ss_pred             EEEEEEEeccccccccccccccccccccccccccccccccceecCCce-eeecCCcEEEEcC--CCCCCceEEEECCEEC
Confidence            34444300      0                  000001222222222 2227999999998  7888899999999987


Q ss_pred             eccCc-eEEEEecCCCeEEEEEEEeCC-CCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670          249 KESSK-IKIIVNEQDDTYEIICEITDP-IGPDSGTYRCNVKNEFGES-NANLNLNI  301 (540)
Q Consensus       249 ~~~~~-~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~-~~~~~l~v  301 (540)
                      ..... ..+...      ...|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus       153 ~~~~~~~~~~~~------~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          153 GGDEDDKNIGSD------EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             SCCTTCTTEEEE------TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             CCccCCceEecC------CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            54321 111111      127999999 9999999999999998853 34444443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.72  E-value=2.2e-17  Score=146.40  Aligned_cols=174  Identities=16%  Similarity=0.295  Sum_probs=113.3

Q ss_pred             CCceeecCCCCeEEEEEEeccc-------CCCeEEEEeCCEEe------ec-----------cCceEEEEecCCCeEEEE
Q psy670          213 KPRIIPNESGTLIQMKCKCSAK-------PRPEVKWFKADKLV------KE-----------SSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~-------p~~~v~W~~~~~~l------~~-----------~~~~~~~~~~~~~~~~~~  268 (540)
                      .+..+.+.+|+.+.|.|.+.+.       +.+.+.|++++...      ..           ..++.+  .........+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~s   83 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL--LGDVQKKNCS   83 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEE--CSCGGGTBCC
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEE--eccCCCCeEE
Confidence            3556778899999999998753       46789999986521      10           012211  1111111236


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCCCe----eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc----CC
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFGES----NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK----PM  340 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~----p~  340 (540)
                      |.|.+++.+|+|.|.|.+.+..+..    ...+.|.|...+.    +|.+.. +.  .+.+|+.++|.|.+.+.    |.
T Consensus        84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~----~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~  156 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE----KPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPP  156 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC----CCEEC---C--CCCTTCCEEEEEECTTCCSCSSC
T ss_pred             EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCC----CCceec-Cc--cccCCCeEEEEEEeccCCCCCCC
Confidence            9999999999999999999875322    2356677765321    344332 22  25689999999999764    78


Q ss_pred             CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEE
Q psy670          341 PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNI  405 (540)
Q Consensus       341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V  405 (540)
                      |.+.|++++..+.....      ..    .+.|.|..+..+|+|.|+|.|.|..+..  ++++.|.|
T Consensus       157 p~v~W~~~~~~~~~~~~------~~----~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          157 LTFSWTGNALSPLDPET------TR----SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             CEEEEESSTTSSSCSSC------CC----SSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             ceEEEeCCCCccCCCCc------ee----EEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            89999999865432110      11    1279999999999999999999986543  44554443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.72  E-value=9.3e-17  Score=146.29  Aligned_cols=190  Identities=15%  Similarity=0.226  Sum_probs=123.0

Q ss_pred             cCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEEee-----------------ccCceEEEEecCCCeEEEEEE
Q psy670          212 EKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKLVK-----------------ESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|++.  +..+.                 ...++.+.....  .....|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~   83 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTS--SNTAYLH   83 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT--TTEEEEE
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecC--CCeEEEE
Confidence            345566788999999999998854  678999982  21110                 012333322221  2234699


Q ss_pred             EeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670          271 ITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP  341 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  341 (540)
                      |.+++.+|+|.|.|.+.+..+.. .....+.|.....        ....++.+...+....+.+|++++|.|.+.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            99999999999999999865443 3445566653200        01124566666777889999999999999998876


Q ss_pred             ----eEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEE
Q psy670          342 ----EIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLT  402 (540)
Q Consensus       342 ----~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  402 (540)
                          .+.|+++  +....            ...++..  ...+.  ..+|.|.+++.+|+|.|.|.|.|..+.. ..-..
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~  239 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSG--SGSRT--DFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK  239 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEE--eCCCC--EEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence                8999984  22111            0122222  12222  3379999999999999999999865432 23345


Q ss_pred             EEEEE
Q psy670          403 LNIEM  407 (540)
Q Consensus       403 l~V~~  407 (540)
                      |.|..
T Consensus       240 l~v~~  244 (253)
T 3uzq_A          240 LEIKR  244 (253)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            66654

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.72  E-value=2.5e-16  Score=140.38  Aligned_cols=179  Identities=13%  Similarity=0.230  Sum_probs=114.7

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|||..  ..   +.              ...++.+..+.   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDN---SKNTLYLQMNS   85 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEET---TTTEEEEEECS
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecC---CCCEEEEEECC
Confidence            45688999999999998765  4689999842  11   10              11233333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc----e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEE
Q psy670          170 PTKDDGGNYRCNACNSIG----E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKW  241 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W  241 (540)
                      ++.+|+|.|.|.+.+..+    .  ....+.|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS---ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC---CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            999999999999998652    1  1234567776321   124444322212234689999999999885 776 9999


Q ss_pred             Ee-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCC--CCcEEEEEEEEcCCCCeee
Q psy670          242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIG--PDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       242 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~  295 (540)
                      ++ +|..+..................+.|.|.....  +|.|.|+|.+.|..+....
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             EETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             EccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            99 887764310000000111122235688888776  7899999999998876544

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.72  E-value=6.9e-18  Score=149.87  Aligned_cols=186  Identities=16%  Similarity=0.185  Sum_probs=115.7

Q ss_pred             CCeeccCCceee--cCCCCeEEEEEEeccc---CC-CeEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCC
Q psy670          207 APSFIEKPRIIP--NESGTLIQMKCKCSAK---PR-PEVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPD  278 (540)
Q Consensus       207 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~---p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d  278 (540)
                      +|.+...+....  +.+|+.+.|.|.+.+.   |. +.|.|++++..+...... .......+  ...+.|.|.+++.+|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHcCC
Confidence            444433333333  7789999999999886   33 689999999876543211 11111222  234579999999999


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEECCEEccCCC
Q psy670          279 SGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFHEGKELQQTD  356 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~~~~~~~~~~  356 (540)
                      +|.|+|.+.+..+.......+..  .. ....+|.+...+.......|+.++|.|.+.| +|.+ .|.|+++|..+....
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~--~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISK--IK-GLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECC--CC-CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCeEEEEEECCcCCCcceEEEee--cC-CCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence            99999999998664312222211  00 1122555544332222235999999999998 5765 999999999874322


Q ss_pred             ceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          357 RISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       357 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ........++. ...+.|.|.....+|.|.|+|.|.|....
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            11111112222 12335777666666799999999998654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.72  E-value=1.3e-17  Score=146.77  Aligned_cols=175  Identities=12%  Similarity=0.147  Sum_probs=111.0

Q ss_pred             ccCCCeEEEEEEEeecC---C-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEASP---M-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~p---~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+|++++|.|.+.|.+   . ..|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            78999999999998874   2 4899999997764321100000011111233589999999999999999999987753


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y  265 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~  265 (540)
                      .....+.+..   ....+|.+...+.......|+.+.|.|.+.+ +|+ ..+.|+++|..+.......... ..++.  .
T Consensus        95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~-~~~g~~~~  170 (207)
T 2vol_A           95 PIEKTISKTK---GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM-DTDGSYFV  170 (207)
T ss_dssp             CEEEEECCCC---CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE-CTTSCEEE
T ss_pred             ceEEEeccCC---CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE-CCCCCEEE
Confidence            2222222100   0113565543333222335999999999998 555 4899999999875432111111 22232  2


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+.|.+.....+|.|.|+|.|.|....
T Consensus       171 ~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          171 YSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             EEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             EEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            345777776667899999999997543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.72  E-value=1.5e-16  Score=141.53  Aligned_cols=175  Identities=15%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|||..  ..   +.              ...++.+...   ......+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~   85 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD---NAKNSLYLQMSK   85 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC---SSSCEEEEEECS
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee---CCCCEEEEEECC
Confidence            35688999999999998765  5689999842  11   10              1134443322   112345899999


Q ss_pred             CCCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC--CeEEEEe
Q psy670          170 PTKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR--PEVKWFK  243 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~  243 (540)
                      ++.+|+|.|.|.+.+..+.   ....+.|.|.....   .+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA---RNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC---BCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCC---CCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            9999999999999987542   12345677764221   245554333 3346789999999999885 76  6899999


Q ss_pred             CCEEeeccCceEEEEecCCCe--EEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          244 ADKLVKESSKIKIIVNEQDDT--YEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ++..+........ . ...+.  ..+.|.|.....+|.|.|+|.+.|..+...
T Consensus       162 ~~~~~~~~~~~~~-~-~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTVNFPPA-L-ASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEEECCCE-E-CSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceEecCce-E-CCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            9876521100001 1 12222  234689988888899999999999877643

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.72  E-value=1.1e-16  Score=146.12  Aligned_cols=186  Identities=17%  Similarity=0.276  Sum_probs=120.9

Q ss_pred             eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                 ...++.+....  ......|.|.++
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v   88 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDK--SSSTAYLELRSL   88 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEEEECSC
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEec--CCCEEEEEECCC
Confidence            45578999999999998865  6789999732  1110                 01222222211  112346999999


Q ss_pred             CCCCcEEEEEEEEcC----CCCeeeeEEEEEeeccC---------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670          275 IGPDSGTYRCNVKNE----FGESNANLNLNIEAEAE---------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP  341 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  341 (540)
                      +.+|+|.|.|.+.+.    .+.......|.|...+.         ....++.+...+....+.+|++++|.|.+.+.|.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  168 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS  168 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence            999999999999987    22233445666653210         00115566666777889999999999999998888


Q ss_pred             eEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-EEEEEEEEE
Q psy670          342 EIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-NANLTLNIE  406 (540)
Q Consensus       342 ~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  406 (540)
                      .+.|++.  +..+.            ...++..  ...+.  ..+|.|.+++.+|+|.|+|.|.|..+.. ..-..|.|.
T Consensus       169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~  244 (256)
T 3umt_A          169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSG--SRSGS--DYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK  244 (256)
T ss_dssp             CEEEEEECTTCCEEEEEETTTEECTTSCTTEEE--EEETT--EEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEECCCCCcEEEEEeccccCCccCCCEEE--ecCCC--EEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence            9999984  22111            1123322  22222  3379999999999999999999864332 334566665


Q ss_pred             E
Q psy670          407 M  407 (540)
Q Consensus       407 ~  407 (540)
                      .
T Consensus       245 ~  245 (256)
T 3umt_A          245 R  245 (256)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.72  E-value=9.7e-18  Score=147.62  Aligned_cols=174  Identities=11%  Similarity=0.138  Sum_probs=110.5

Q ss_pred             cCCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCce-EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          219 NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKI-KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      +.+|+++.|.|.+.+.+    ...|.|++++..+...... ..............|.|.+++.+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            77899999999998874    3489999999776432110 000011111223579999999999999999999987754


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeE
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYH  370 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~  370 (540)
                      .....+.+..   ....+|.+...+.......|+.+.|.|.+.|. |. +.|.|+++|..+............++. ...
T Consensus        95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~  171 (207)
T 2vol_A           95 PIEKTISKTK---GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVY  171 (207)
T ss_dssp             CEEEEECCCC---CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEE
T ss_pred             ceEEEeccCC---CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEE
Confidence            2222222100   01225655443322223358999999999984 55 389999999987543211111122222 223


Q ss_pred             EEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          371 IRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       371 ~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +.|.|.....+|.|.|+|.|.|...
T Consensus       172 s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          172 SKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEEEECHHHcCCCCEEEEEEECCCC
Confidence            4677877767789999999999864

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.72  E-value=2.7e-18  Score=152.01  Aligned_cols=175  Identities=15%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|+  +..+.            ...++....     ......|.|.+++.+|+|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   82 (212)
T 1nfd_E            8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGAQPEDEA   82 (212)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGCS
T ss_pred             eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-----eCCEEEEEECcCCcccCE
Confidence            45688999999999997777788999984  33221            023333322     112348999999999999


Q ss_pred             EEEEEEEcC-Ccee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEeecc
Q psy670          177 NYRCNACNS-IGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVKES  251 (540)
Q Consensus       177 ~Y~C~~~~~-~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~~~  251 (540)
                      .|+|.+.+. .+..  .....|.|.....   .+|.+...+....+.+|+.+.|.|.+.+. |+ +.+.|+++|..+...
T Consensus        83 ~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           83 AYYCLSSYGDNNDLVFGSGTQLTVLRGPK---SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEECCCC---BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEEEEEEcccCcccccCCceEEEEccCCC---CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCC
Confidence            999999963 2221  2334555543211   25555544433344579999999999885 55 799999999988654


Q ss_pred             CceEEEEecCC-CeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          252 SKIKIIVNEQD-DTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       252 ~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      ........... ....+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          160 VKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             CBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             eecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            22111111111 1223468899999999999999999987653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.72  E-value=4.6e-17  Score=145.32  Aligned_cols=182  Identities=13%  Similarity=0.191  Sum_probs=116.8

Q ss_pred             ccccCCCeEEEEEEEeecCCC---ceEEEeCCEeecC----------------CCceEEEEe--ecCcceEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVLEASPMP---DIIWYQGTKVIED----------------TGRIKMSKK--SIGKDTYLLRLEINNP  170 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~~L~i~~~  170 (540)
                      +.+..|++++|.|.+.+.+.+   .+.|+|++..+..                ..+......  ........++|.|.++
T Consensus        11 V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   90 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGL   90 (225)
T ss_dssp             EEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSC
T ss_pred             EEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccC
Confidence            457789999999999877766   4899997643310                011111100  0011112347999999


Q ss_pred             CCCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEec-ccCCCeEEEEeCCEEe
Q psy670          171 TKDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCS-AKPRPEVKWFKADKLV  248 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l  248 (540)
                      +.+|+|.|+|.+.+..+.. .....+.+..       +|.+...+.......++.+.+.|.+. +.|++.+.|++++..+
T Consensus        91 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~  163 (225)
T 4fmk_A           91 RVEDEGNYTCEFATFPNGTRRGVTWLRVIA-------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE  163 (225)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred             CHHHCcceEEEEEeCCCcceeeeeeeeeec-------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence            9999999999999876654 3334444442       34333334444556677777777765 5888899999987665


Q ss_pred             eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          249 KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      ....... ..........+.|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus       164 ~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          164 AKDTQEP-GIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             EEEEEEE-CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cCCcceE-EecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            4322111 111122233457999999999999999999998877655444444

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.71  E-value=2.4e-17  Score=149.54  Aligned_cols=178  Identities=16%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe----------------CCEeecCC---CceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ----------------GTKVIEDT---GRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|.+.+.+.+.+.|+|                ++......   .++.+....    ...++|.|.+++
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~   85 (246)
T 4dzb_B           10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLSTLTVTSAH   85 (246)
T ss_dssp             EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE----TTEEEEEECSCC
T ss_pred             EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC----CCEEEEEECCCC
Confidence            3567899999999999888899999999                22222211   344333211    123489999999


Q ss_pred             CCCCeEEEEEEEcCCc----eeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecccCCC--eEEEEeC
Q psy670          172 KDDGGNYRCNACNSIG----ESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAKPRP--EVKWFKA  244 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~  244 (540)
                      .+|+|.|.|.+.+..+    .....+.|.|..... ...+|.+. ..+....+.+|+.++|.|.+.+.|++  .+.|+++
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~  164 (246)
T 4dzb_B           86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  164 (246)
T ss_dssp             GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC-cccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEEC
Confidence            9999999999987643    222344566654111 11244432 33444445569999999999885544  8999999


Q ss_pred             CEEeeccCceEEEE--e---cCCCe--EEEEEEEeCCCCCC-cEEEEEEEEcCCCCe
Q psy670          245 DKLVKESSKIKIIV--N---EQDDT--YEIICEITDPIGPD-SGTYRCNVKNEFGES  293 (540)
Q Consensus       245 ~~~l~~~~~~~~~~--~---~~~~~--~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~  293 (540)
                      |..+..........  .   +..+.  ..+.|.|.....+| .|.|+|.|.|.....
T Consensus       165 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          165 GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             TEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            99886532211000  0   01222  23468888887778 999999999975543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.71  E-value=1.2e-16  Score=145.59  Aligned_cols=186  Identities=15%  Similarity=0.243  Sum_probs=120.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEee-----------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVI-----------------EDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|.  +..+                 ....++.+....   .....+|.|.+
T Consensus        10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~   86 (253)
T 3uzq_A           10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADT---SSNTAYLHLSS   86 (253)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeec---CCCeEEEEeCC
Confidence            46788999999999998754  678999992  2111                 011333333221   11234799999


Q ss_pred             CCCCCCeEEEEEEEcCCcee-EEEEEEEEecCcC--------CCCCCCeeccCCceeecCCCCeEEEEEEecccCCC---
Q psy670          170 PTKDDGGNYRCNACNSIGES-NANIALNFQGGEN--------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP---  237 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---  237 (540)
                      ++.+|+|.|+|.+.+..+.. .....|.|.....        ....++.+...+....+.+|++++|.|.+.+.+.+   
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~  166 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGN  166 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTE
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCC
Confidence            99999999999999865443 3455666664200        01124556666777888999999999999987776   


Q ss_pred             -eEEEEeC--CEEee---c---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670          238 -EVKWFKA--DKLVK---E---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNI  301 (540)
Q Consensus       238 -~v~W~~~--~~~l~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v  301 (540)
                       .+.|+++  +..+.   .         ..++....  ..  ....|.|.+++.+|+|.|.|.+.+..+.. .....|.|
T Consensus       167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~--~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v  242 (253)
T 3uzq_A          167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG--SR--TDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI  242 (253)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ET--TEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC--CC--CEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence             8999984  22111   0         01222111  11  12479999999999999999999865432 23455666


Q ss_pred             ee
Q psy670          302 EA  303 (540)
Q Consensus       302 ~~  303 (540)
                      ..
T Consensus       243 ~~  244 (253)
T 3uzq_A          243 KR  244 (253)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.71  E-value=2.9e-17  Score=146.28  Aligned_cols=179  Identities=15%  Similarity=0.240  Sum_probs=116.5

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---eec----------------cCceEEEEecCCCeEEEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VKE----------------SSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~~----------------~~~~~~~~~~~~~~~~~~l~  270 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|++++  ..   +..                ..++.+....  ......|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~   84 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD--SKSSVYLQ   84 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG--GGTEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC--CCCeEEEE
Confidence            3445678899999999998765  6789999853  11   100                1223322221  11234799


Q ss_pred             EeCCCCCCcEEEEEEEEcCCCCe-e--eeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670          271 ITDPIGPDSGTYRCNVKNEFGES-N--ANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW  345 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W  345 (540)
                      |.+++.+|+|.|.|.+.+..+.. .  ....+.|....   ..+|.+...+....+.+|+.++|.|.+.|. |.| .|.|
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  161 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT---TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKW  161 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEE
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC---CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            99999999999999999875432 1  34556665321   124555443322335689999999999987 888 9999


Q ss_pred             EECCEEcc--CCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          346 FHEGKELQ--QTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       346 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      ++++....  ......    ..+. ...+.|.|.....+| |.|+|.|.|..|...+++.
T Consensus       162 ~~~~~~~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          162 NYGALSSGVRTVSSVL----QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             GGGTCCTTEEECCCEE----ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             ecCCcccceEEcCCcc----cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99876421  011100    1111 123479998888766 9999999999987666543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.71  E-value=5.6e-17  Score=138.58  Aligned_cols=154  Identities=17%  Similarity=0.263  Sum_probs=108.3

Q ss_pred             CccccCCCeEEEEEEEe--ecCCCceEEEe--CCEeec----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLE--ASPMPDIIWYQ--GTKVIE----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~--~~p~~~v~W~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+...+|++++|.|...  +.+.+.|.|++  ++..+.          ...+..+..     +.   +|.|.+++.+|+|
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~-----ng---sL~I~~v~~~DsG   79 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK-----NG---TLKIKHLKTDDQD   79 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECT-----TS---CEEECSCCGGGCE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECC-----CC---CEEECCCChhhCE
Confidence            34567899999999542  24566899999  887662          233443331     11   7999999999999


Q ss_pred             EEEEEEEcCCcee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCce
Q psy670          177 NYRCNACNSIGES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKI  254 (540)
Q Consensus       177 ~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~  254 (540)
                      .|+|.+.+..|..  ...+.|.|.....    .|.+..        .+..+.|.|.+.+.|.+.+.|+++|..+ .... 
T Consensus        80 ~Y~c~~~n~~g~~~~~~~~~L~V~~~~~----~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~-  145 (182)
T 1hnf_A           80 IYKVSIYDTKGKNVLEKIFDLKIQERVS----KPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQ-  145 (182)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEECCCC----CCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EEES-
T ss_pred             EEEEEEEeCCCceeEEEEEEEEEcCcCC----CCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CCCC-
Confidence            9999999987764  3566777774211    333322        2336899999999889999999999887 2111 


Q ss_pred             EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEE
Q psy670          255 KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNL  299 (540)
Q Consensus       255 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l  299 (540)
                                  ..+.+.. ..+|+|.|+|.|.|..+.......+
T Consensus       146 ------------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          146 ------------RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             ------------SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             ------------cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence                        0233333 4679999999999998877665544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.71  E-value=1.8e-16  Score=144.58  Aligned_cols=183  Identities=16%  Similarity=0.284  Sum_probs=119.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee----------ccCceEEEEecCCCeEEEEEEEe
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK----------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~----------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      ..+...+..+.+.+|++++|.|.+.+.|.+.+.|++..  ..   +.          ...++.......  ....+|.|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I~   81 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS--DSSFHLRKA   81 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT--TTEEEEEES
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC--CCEEEEEEC
Confidence            34555667788889999999999999899999999832  11   10          012222221111  123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCCe----eeeEEEEEeecc-------------CCCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670          273 DPIGPDSGTYRCNVKNEFGES----NANLNLNIEAEA-------------EPEGDPPTFIEKPKIRSEQGGKLVVMECKV  335 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~~----~~~~~l~v~~~~-------------~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~  335 (540)
                      +++.+|+|.|.|.+.+..+..    .....|.|....             .....++.+...+....+.+|+.++|.|.+
T Consensus        82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE
T ss_pred             CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc
Confidence            999999999999999875422    223456665410             001225667777888888899999999999


Q ss_pred             EccCCCeEEEEECCE--Ec---c------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          336 KAKPMPEIVWFHEGK--EL---Q------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       336 ~~~p~~~i~W~~~~~--~~---~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+. .+.+.|++...  ..   .            ...++...  .. .....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus       162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT--RT-TQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE--CC-SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE--eC-CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            876 67999998321  10   0            01111111  10 112237999999999999999999997654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=9.6e-17  Score=143.43  Aligned_cols=186  Identities=15%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----c------------cCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----E------------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----~------------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|++.+  ..+.     .            ..++.+....  ......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~   84 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT--SSSTAYMQLS   84 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEEC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeC--CCCeEEEEEC
Confidence            4456788999999999998876  6789999853  2110     0            1233332221  1123579999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECC
Q psy670          273 DPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEG  349 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~  349 (540)
                      +++.+|+|.|.|.+.+..+. ......|.|....   ..+|.+........+..|+.++|.|.+.|. |.+ .|.|++++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  161 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK---TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGS  161 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC---CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC---CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCC
Confidence            99999999999999986321 1223456665421   124554433222345679999999999985 776 99999998


Q ss_pred             EEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          350 KELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      ..+........  ...+. ...+.|.|..+..+| |.|+|.|.|..+.......+.+..
T Consensus       162 ~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~  217 (227)
T 1mju_H          162 LSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRG  217 (227)
T ss_dssp             BCTTEEECCCE--EETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred             CcCCcEECCce--ecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence            76431100000  11111 123479999988878 999999999877766666665554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.71  E-value=4.5e-17  Score=148.33  Aligned_cols=173  Identities=16%  Similarity=0.184  Sum_probs=114.5

Q ss_pred             CccccCCCeEEEEEEEeecC-----CCceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP-----MPDIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-----~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|.+.+.+     .+.+.|+|++  ..+   .         ...++....     .....+|.|.+++
T Consensus        43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~  117 (252)
T 3bkj_L           43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-----SGTDFTLRISRVE  117 (252)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-----cCCEEEEEECCCC
Confidence            45688999999999998877     5789999954  111   0         012333321     1123489999999


Q ss_pred             CCCCeEEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEe
Q psy670          172 KDDGGNYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLV  248 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l  248 (540)
                      .+|+|.|+|.+.+..+.. ...+.|.|....    .+|.+...+....+.+|+.++|.|.+.+ .|.+ .|.|+++|..+
T Consensus       118 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~  193 (252)
T 3bkj_L          118 AEDLGVYYCFQASLVPLTFGAGTKLELKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER  193 (252)
T ss_dssp             GGGCEEEEEEECSBSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             cccCEEEEEEEEcCCccEECCCEEEEEeCCC----cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence            999999999998875532 223456665321    2455544333222346899999999988 5554 79999999987


Q ss_pred             eccCceEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          249 KESSKIKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       249 ~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      ........ ......+  ...+.|.|.++..+|+|.|+|.|.|....
T Consensus       194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            64411111 1111222  23457999999999999999999997654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1.6e-17  Score=149.53  Aligned_cols=177  Identities=18%  Similarity=0.204  Sum_probs=114.2

Q ss_pred             CccccCCCeEEEEEEEeecC-CC-ceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP-MP-DIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-~~-~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|.+.+.+ .+ .+.|+|++  ..+   .         ...++....     .....+|.|.+++.+|
T Consensus        28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D  102 (234)
T 2j6e_L           28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-----SGTSASLAISGLRSED  102 (234)
T ss_dssp             CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-----ETTEEEEEEESCCSTT
T ss_pred             cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-----cCCeEEEEECCCCHHH
Confidence            45688999999999997754 34 69999853  211   0         112333221     1123489999999999


Q ss_pred             CeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEEEEeCCEEee
Q psy670          175 GGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVKWFKADKLVK  249 (540)
Q Consensus       175 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~l~  249 (540)
                      +|.|+|.+.+..+.   ....+.|.|...+.   .+|.+...+......+|+.++|.|.+.+. |+ +.+.|+++|..+.
T Consensus       103 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~  179 (234)
T 2j6e_L          103 EADYYCATWDDSLSAVIFGGGTKLTVLGQPK---AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK  179 (234)
T ss_dssp             CSEEEEEEEETTTTEEEECCCBCCCBCCCCC---CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred             CEEEEEEEEcCCcceeEecCCEEEEEecCCC---CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence            99999999988762   22234555543211   24444432322223358899999999884 44 4899999999876


Q ss_pred             ccCceEEEEecC--CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          250 ESSKIKIIVNEQ--DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       250 ~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ............  .....+.|.|.++..+|.|.|+|.|.|.......
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          180 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             SSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             CCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence            542110001111  1223357889999999999999999998765433

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.71  E-value=5.5e-17  Score=144.88  Aligned_cols=175  Identities=15%  Similarity=0.237  Sum_probs=112.7

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                 ...++.+....   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD---LEDFVYLQMHK   85 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecC---CCCEEEEEECC
Confidence            35688999999999998776  6789999842  2110                 12344443221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc-----e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eE
Q psy670          170 PTKDDGGNYRCNACNSIG-----E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EV  239 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v  239 (540)
                      ++.+|+|.|.|.+.+..+     .   ....+.|.|.....   .+|.+........+.+|+.++|.|.+.+. |.+ .|
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC---BCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC---cCCeEEEecccccccCCCcEEEEEEEEeEECCCeEE
Confidence            999999999999998754     1   12345677764211   23444322222235679999999999885 776 99


Q ss_pred             EEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          240 KWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       240 ~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .|++++..+...........+......+.|.|.++..+| |.|+|.|.|..+.
T Consensus       163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            999998653211000011111122234578999988888 9999999996554

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.71  E-value=7.5e-17  Score=143.56  Aligned_cols=177  Identities=20%  Similarity=0.308  Sum_probs=116.0

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---e-c--C-------------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---I-E--D-------------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~-~--~-------------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|+|++  ..   + .  .             ..++.+....   .....+|.|
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I   85 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD---SKSSVYLQM   85 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG---GGTEEEEEE
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC---CCCeEEEEE
Confidence            35678999999999998766  6789999953  11   1 0  0             1344433221   122348999


Q ss_pred             cCCCCCCCeEEEEEEEcCCcee-E--EEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEE
Q psy670          168 NNPTKDDGGNYRCNACNSIGES-N--ANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWF  242 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~  242 (540)
                      .+++.+|+|.|.|.+.+..+.. .  ..+.|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  162 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT---TTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN  162 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC---CCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence            9999999999999999875321 1  34566665321   124554433333345789999999999985 888 99999


Q ss_pred             eCCEEee--ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670          243 KADKLVK--ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL  297 (540)
Q Consensus       243 ~~~~~l~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  297 (540)
                      +++....  .....  . ........+.|.|.++..++ |.|+|.|.|..+.....+
T Consensus       163 ~~~~~~~~~~~~~~--~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          163 YGALSSGVRTVSSV--L-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             GGTCCTTEEECCCE--E-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcccceEEcCCc--c-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            9886311  11110  0 11111224578998888766 999999999988655443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.71  E-value=1e-16  Score=143.51  Aligned_cols=178  Identities=16%  Similarity=0.308  Sum_probs=113.0

Q ss_pred             CccccCCCeEEEEEEEeecCC----CceEEEeC--CEee----c------------CCCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPM----PDIIWYQG--TKVI----E------------DTGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~--~~~~----~------------~~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ...+.+|++++|.|.+.+.+.    +.+.|+|+  +..+    .            ...++.+.....   ....+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~   85 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS---RDMVFMKIT   85 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT---TTEEEEEEC
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC---CCeEEEEEc
Confidence            356789999999999988764    78999984  2211    0            012333332211   123489999


Q ss_pred             CCCCCCCeEEEEEEEcCCc------e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-
Q psy670          169 NPTKDDGGNYRCNACNSIG------E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-  237 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-  237 (540)
                      +++.+|+|.|.|.+.+..+      .   ....+.|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ 
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~  162 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV  162 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC---CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC---CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence            9999999999999998654      1   1123667776321   124555433323335689999999999885 777 


Q ss_pred             eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeee
Q psy670          238 EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNAN  296 (540)
Q Consensus       238 ~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  296 (540)
                      .+.|++++..+......... ........+.|.|..+..++ |.|+|.|.|..+.....
T Consensus       163 ~v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          163 TLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             EEEEGGGTCCTTEEEEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEEeeCCcccCceEcCcee-CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            99999988753211111111 11112234578999988866 99999999987765433

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.71  E-value=7.9e-17  Score=142.67  Aligned_cols=164  Identities=14%  Similarity=0.234  Sum_probs=110.8

Q ss_pred             eEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCE--Ec------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGK--EL------------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++.+.  ..            ....++...  ..+.  ..+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v   78 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--GSGR--DSSFTISSL   78 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSC
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--ccCC--EEEEEECCC
Confidence            34444667788999999999999999999999998321  00            012233332  1222  338999999


Q ss_pred             CCCCCeeEEEEEEcCCee-eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeecee
Q psy670          379 RKEDTGLYKCNIKNFHGE-LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVI  457 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  457 (540)
                      +.+|+|.|+|.|.|..+. ......|.|..                                           ...+|.+
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-------------------------------------------~~~~p~v  115 (213)
T 3r06_A           79 ESEDIGSYYCQQYYNYPWTFGPGTKLEIKR-------------------------------------------ADAKPTV  115 (213)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEECC-------------------------------------------CCBCCEE
T ss_pred             CcccCEEEEEecccCCceEEcCCceEEEec-------------------------------------------cCCCcee
Confidence            999999999999987642 23345566532                                           1126666


Q ss_pred             ecCCcEEEecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCC------------eE----EEEEEec---CCeEEEEE
Q psy670          458 REVPKVVTISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDN------------KH----VVHIEQV---KDVSMNFE  516 (540)
Q Consensus       458 ~~~~~~~~~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~------------~~----~~~~~~~---~~g~y~c~  516 (540)
                      ...+....+..|+.++|.|.+.|.+++  .++|+|+|..+..+.            .+    .+.+...   +.|.|+|.
T Consensus       116 ~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~  195 (213)
T 3r06_A          116 SIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCE  195 (213)
T ss_dssp             EEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEE
T ss_pred             eeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEE
Confidence            654444455678899999999987654  899999999886531            11    2234443   48999999


Q ss_pred             Eeeeeee
Q psy670          517 LWLGIVE  523 (540)
Q Consensus       517 ~~~~~~~  523 (540)
                      +....+.
T Consensus       196 v~n~~~~  202 (213)
T 3r06_A          196 VTHKTST  202 (213)
T ss_dssp             EEETTCS
T ss_pred             EEecccC
Confidence            9875443

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=6.4e-17  Score=144.56  Aligned_cols=182  Identities=13%  Similarity=0.218  Sum_probs=112.1

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee------c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI------E-----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|++  ..+      .           ...++.+..+.   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (227)
T 1mju_H            9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT---SSSTAYMQLSS   85 (227)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeC---CCCeEEEEECC
Confidence            45688999999999998776  6789999853  211      0           02333333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCE
Q psy670          170 PTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADK  246 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~  246 (540)
                      ++.+|+|.|.|.+.+..+. ....+.|.|....   ..+|.+........+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK---TTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECSSC---CBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcCCC---CCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            9999999999999886432 1233467776421   124444332222345679999999999984 776 999999987


Q ss_pred             EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670          247 LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN  300 (540)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  300 (540)
                      .+......... ........+.|.|..+..+| |.|+|.|.|..+.......+.
T Consensus       163 ~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~  214 (227)
T 1mju_H          163 SSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE  214 (227)
T ss_dssp             CTTEEECCCEE-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             cCCcEECCcee-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeC
Confidence            64211110111 11112234579999988888 999999999766544444443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.71  E-value=2.3e-16  Score=142.26  Aligned_cols=173  Identities=16%  Similarity=0.278  Sum_probs=111.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEee---------------cCCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI---------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ...+.+|++++|.|. .+.|.+.+.|+|+  +..+               ....++.+..    ......+|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~   83 (238)
T 2p1y_A            9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR----PSQENFSLILELATPS   83 (238)
T ss_dssp             EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC----CSSSBCEEEESSCCGG
T ss_pred             ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc----cCCceEEEEEecCCcc
Confidence            356889999999999 6888899999995  2111               0122333322    0111237999999999


Q ss_pred             CCeEEEEEEEcCCcee-----EEEEEEEEecCcCCC-----CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe
Q psy670          174 DGGNYRCNACNSIGES-----NANIALNFQGGENGA-----GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK  243 (540)
Q Consensus       174 d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~~~-----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~  243 (540)
                      |+|.|+|.+.+..+..     .....|.|.......     ...+.+...+....+.+|+.++|.|.+.+.|.+.+.|++
T Consensus        84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k  163 (238)
T 2p1y_A           84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQ  163 (238)
T ss_dssp             GCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEE
T ss_pred             cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEE
Confidence            9999999999875421     123456665421100     000144455667778899999999999999889999999


Q ss_pred             CCE-----Eee---------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          244 ADK-----LVK---------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       244 ~~~-----~l~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      ++.     .+.         ...++......  ......|.|.+++.+|+|.|+|.+.|..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          164 QFPGEGPALLISILSVSDKKEDGRFTIFFNK--REKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             ECTTSCCEEEEEEETTCSEEEETTEEEEEET--TTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             ECCCCCCEEEEEEccCCCcccCCceEEEecC--CCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            641     110         11222222111  1123479999999999999999999873

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.71  E-value=4.3e-17  Score=145.51  Aligned_cols=183  Identities=14%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             CceeecCCCCeEEEEEEecccCCC---eEEEEeCCEEeecc----------------CceEEEEe---cCCCeEEEEEEE
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRP---EVKWFKADKLVKES----------------SKIKIIVN---EQDDTYEIICEI  271 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~~l~~~----------------~~~~~~~~---~~~~~~~~~l~i  271 (540)
                      +..+.+..|++++|.|.+.+.+.+   .|.|+|++..+...                .+......   ........+|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            335667789999999999887665   48999977543210                00000000   001112246999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCCeeeeE-EEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECC
Q psy670          272 TDPIGPDSGTYRCNVKNEFGESNANL-NLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEG  349 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~~~~~~-~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~  349 (540)
                      .+++.+|+|.|+|.+.+..+...... .+.+..       +|.....+.......++.+.+.|.+. +.|++.+.|++++
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~  160 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIA-------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSL  160 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSS
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeec-------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECC
Confidence            99999999999999998766544333 333332       34443333344455677777777765 5788899999987


Q ss_pred             EEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          350 KELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      ..+......  ....++. ...+.|.|..+..+|+|.|+|.|.|..+....+..+.|
T Consensus       161 ~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          161 GGEAKDTQE--PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             CCEEEEEEE--ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             ccccCCcce--EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            654332111  1111222 22347999999999999999999999887654444433

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.71  E-value=4.3e-17  Score=148.41  Aligned_cols=181  Identities=15%  Similarity=0.239  Sum_probs=118.4

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCCE--E---eec---------cCceEEEEecCCCeEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKADK--L---VKE---------SSKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~~--~---l~~---------~~~~~~~~~~~~~~~~~~l  269 (540)
                      .+...+....+.+|++++|.|.+.+.+     .+.+.|++++.  .   +..         ..++.....    .....|
T Consensus        36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L  111 (252)
T 3bkj_L           36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS----GTDFTL  111 (252)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEE
T ss_pred             EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc----CCEEEE
Confidence            344456677788999999999998877     57899999541  1   100         112222111    112379


Q ss_pred             EEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670          270 EITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF  346 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~  346 (540)
                      .|.+++.+|+|.|.|.+.+..+.. .....+.|....    .+|.+...+....+..|+.++|.|.+.+ .|.+ .|.|+
T Consensus       112 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  187 (252)
T 3bkj_L          112 RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  187 (252)
T ss_dssp             EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCC----BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCC----cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEE
Confidence            999999999999999999875532 223456664321    2455554332222346899999999998 4544 79999


Q ss_pred             ECCEEccCCCceEEEEE--ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          347 HEGKELQQTDRISWNVT--LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       347 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ++|..+...........  .++. ...+.|.|..+..+|+|.|+|.|.|.....
T Consensus       188 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          188 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             ECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            99998765411111111  1121 223579999999999999999999987553

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.71  E-value=3.7e-16  Score=142.59  Aligned_cols=186  Identities=15%  Similarity=0.264  Sum_probs=120.7

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|||..  ..+.                 ...++.+....   .....+|.|.+
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~   87 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDK---SSSTAYLELRS   87 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEec---CCCEEEEEECC
Confidence            35688999999999998766  6789999832  1110                 11333333221   11234799999


Q ss_pred             CCCCCCeEEEEEEEcC----CceeEEEEEEEEecCcC---------CCCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670          170 PTKDDGGNYRCNACNS----IGESNANIALNFQGGEN---------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR  236 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  236 (540)
                      ++.+|+|.|.|.+.+.    .+.....+.|.|...+.         ....++.+...+....+.+|++++|.|.+.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            9999999999999987    23334456677764210         0011456666677788899999999999999888


Q ss_pred             CeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEE
Q psy670          237 PEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNI  301 (540)
Q Consensus       237 ~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v  301 (540)
                      +.+.|++.  +..+.            ...++.....    .....|.|.+++.+|+|.|+|.+.+..... .....|.|
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V  243 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS----GSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEI  243 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE----TTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC----CCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEE
Confidence            89999984  22111            0122222111    112469999999999999999999854332 23455666


Q ss_pred             ee
Q psy670          302 EA  303 (540)
Q Consensus       302 ~~  303 (540)
                      ..
T Consensus       244 ~~  245 (256)
T 3umt_A          244 KR  245 (256)
T ss_dssp             C-
T ss_pred             EC
Confidence            54

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.71  E-value=4.2e-16  Score=140.84  Aligned_cols=178  Identities=16%  Similarity=0.248  Sum_probs=113.9

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E---Eeec---------cCceEEEEecCCCeEEEEEEEeCCC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K---LVKE---------SSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      +...+..+.+.+|++++|.|.+.+.|.+.+.|+++.  .   .+..         ..++.....    .....|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~   79 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS----GTDFTLSINSVE   79 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTEEEEEESSCC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC----CCEEEEEECCCC
Confidence            344566778889999999999999888899999853  1   1110         122222211    112479999999


Q ss_pred             CCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCC------CCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCeEEEE
Q psy670          276 GPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPE------GDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPEIVWF  346 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~------~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~  346 (540)
                      .+|+|.|.|.+.+..+.. .....|.|...+...      ..++..+..+....+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  159 (242)
T 2znx_A           80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXI  159 (242)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred             hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence            999999999999875432 234556665432100      0112233333334588999999999999876  4789999


Q ss_pred             ECC--EEcc----------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          347 HEG--KELQ----------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       347 ~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      +++  ..+.                ...++..  ..+......+|.|.+++.+|+|.|+|.|.|.
T Consensus       160 k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          160 RKFPGNRLEYMGYVSYSGSTYYNPSLKSRISI--TRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             EECTTSCEEEEEEECTTSCEEECGGGTTCEEE--EEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eeCCCCCcEEEEEEecCCccccCccccCcEEE--EecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            852  2210                0222222  2222223448999999999999999999984

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.71  E-value=1e-16  Score=136.94  Aligned_cols=133  Identities=18%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             ceeeeee--cCeec----------ccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCccee--eeEEEE
Q psy670           24 FQMNMYH--KGSLL----------KMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGS--STVNLN   89 (540)
Q Consensus        24 ~~~~W~k--~~~~l----------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--~~~~l~   89 (540)
                      +.|.|+|  ++..|          ..+.|+.+  ..++       +|+|.+++.+|+|.|+|.+.|..|...  ..+.|.
T Consensus        31 ~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~--~~ng-------sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~  101 (182)
T 1hnf_A           31 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL--FKNG-------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK  101 (182)
T ss_dssp             EEEEEEEGGGCCEEEEECGGGCEEESCTTEEE--CTTS-------CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEeCccCCCCCCCeEEE--CCCC-------CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEE
Confidence            7999999  88876          23344443  2343       899999999999999999999887654  455666


Q ss_pred             EeecCCccccCCCCCCCCCCCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcC
Q psy670           90 FSEEDGKLKVPGGKAPRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus        90 v~~~~~~~~i~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      |......              |.+...+..++|.|.+.+.|.+.|.|+++|..+ .....              .|.+..
T Consensus       102 V~~~~~~--------------P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~--------------~i~~~~  152 (182)
T 1hnf_A          102 IQERVSK--------------PKISWTCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQR--------------VITHKW  152 (182)
T ss_dssp             EECCCCC--------------CEEEEETTTTEEEEECSSCSSCEEEEEESSCEE-EEESS--------------CEEEEC
T ss_pred             EcCcCCC--------------CEEEEccCcEEEEeEccCCCCCEEEEEECCEEC-CCCCc--------------EEEEec
Confidence            6643211              122223446999999988888999999999877 11100              233333


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEE
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIAL  195 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l  195 (540)
                       ..+|+|.|+|.|.|..+.......+
T Consensus       153 -~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          153 -TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             -CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             -ccCCCcEEEEEEEeCCCCcEEccee
Confidence             4789999999999999887666554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.71  E-value=1.1e-17  Score=150.71  Aligned_cols=181  Identities=11%  Similarity=0.171  Sum_probs=115.7

Q ss_pred             CceeecCCCCeEEEEEEecccC-CC-eEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP-RP-EVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      +....+.+|++++|.|.+.+.+ .+ .+.|++++  ..+   .         ...++.....    .....|.|.+++.+
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~  101 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS----GTSASLAISGLRSE  101 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE----TTEEEEEEESCCST
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEec----CCeEEEEECCCCHH
Confidence            6677788999999999998754 34 69999863  211   0         0122222211    11247999999999


Q ss_pred             CcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccC-C-CeEEEEECCEEc
Q psy670          278 DSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP-M-PEIVWFHEGKEL  352 (540)
Q Consensus       278 d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p-~-~~i~W~~~~~~~  352 (540)
                      |+|.|+|.+.+..+.   ......+.|...+   ..+|.+...+.......|+.++|.|.+.+.+ + +.|.|+++|..+
T Consensus       102 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  178 (234)
T 2j6e_L          102 DEADYYCATWDDSLSAVIFGGGTKLTVLGQP---KAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV  178 (234)
T ss_dssp             TCSEEEEEEEETTTTEEEECCCBCCCBCCCC---CCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred             HCEEEEEEEEcCCcceeEecCCEEEEEecCC---CCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence            999999999998762   2223344443211   1234433322222234688999999999854 3 389999999988


Q ss_pred             cCCCceEEEEE-ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          353 QQTDRISWNVT-LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       353 ~~~~~~~~~~~-~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ........... .++. ...+.|.|..+..+|+|.|+|.|.|..+...+++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            65421100000 1111 2234799999999999999999999987755544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.70  E-value=7.4e-16  Score=140.67  Aligned_cols=186  Identities=16%  Similarity=0.326  Sum_probs=118.4

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e-------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I-------------EDTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+.+|++++|.|.+.+.  +.+.+.|+|..  ..   +             ....++.+....   .....+|.|.++
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v   93 (257)
T 3gkz_A           17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDT---SKNQVYLQLKSV   93 (257)
T ss_dssp             CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEG---GGTEEEEEECSC
T ss_pred             CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEec---CCceEEEEECCC
Confidence            3568899999999999884  46799999832  11   1             011233333221   112348999999


Q ss_pred             CCCCCeEEEEEEEcCC----ceeEEEEEEEEecCcC-------CCCCCCeeccCCceeecCCCCeEEEEEEecccCCC-e
Q psy670          171 TKDDGGNYRCNACNSI----GESNANIALNFQGGEN-------GAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRP-E  238 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~-------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~  238 (540)
                      +.+|+|.|.|.+.+..    ......+.|.|.....       ....++.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus        94 ~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  173 (257)
T 3gkz_A           94 SSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSH  173 (257)
T ss_dssp             CGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGG
T ss_pred             ChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceE
Confidence            9999999999999862    2223445666664310       01124556666777888999999999999987777 8


Q ss_pred             EEEEeC--CEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe-eeeEEEEEee
Q psy670          239 VKWFKA--DKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES-NANLNLNIEA  303 (540)
Q Consensus       239 v~W~~~--~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~  303 (540)
                      +.|++.  +..+..            ..++....  ..  ....|.|.+++.+|+|.|+|.+.+..... .....|.|..
T Consensus       174 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~  249 (257)
T 3gkz_A          174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG--SG--TSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR  249 (257)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ET--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEECCCCCcEEEEEEccccCCCcCCCEEEec--CC--CEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence            999983  222110            01221111  11  12479999999999999999998753322 2223455543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.70  E-value=3e-16  Score=139.85  Aligned_cols=181  Identities=12%  Similarity=0.204  Sum_probs=115.7

Q ss_pred             ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee--------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK--------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~--------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ..+.+.+|++++|.|.+.+.+  .+.+.|++..  ..   +.              ...++.+....  ......|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~   85 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDN--SKNTLYLQMNS   85 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEET--TTTEEEEEECS
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecC--CCCEEEEEECC
Confidence            355678999999999998765  4689999843  11   10              01223332221  11235799999


Q ss_pred             CCCCCcEEEEEEEEcCCC---C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670          274 PIGPDSGTYRCNVKNEFG---E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVW  345 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~---~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W  345 (540)
                      ++.+|+|.|.|.+.+..+   .   ......|.|....   ..+|.+...+....+..|+.++|.|.+.+. |.+ .+.|
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  162 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS---ASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSW  162 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCC---CCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEe
Confidence            999999999999998653   1   1233466665311   124554432111234689999999999986 777 9999


Q ss_pred             EE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEE
Q psy670          346 FH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       346 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ++ +|..+.. .........++. ...+.|.|.....  +|.|.|+|.|.|..+......
T Consensus       163 ~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          163 KYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EETTSCBCSC-EEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EccCCCccce-eEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            99 8887754 100000011221 1234788888776  789999999999988765544

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.70  E-value=3.4e-16  Score=140.34  Aligned_cols=186  Identities=13%  Similarity=0.200  Sum_probs=113.2

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Ee---e---c----------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KV---I---E----------DTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~---~---~----------~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+.+|++++|.|.+.+.+  ...+.|||..  ..   +   .          ...++.+..+.   ....++|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v   85 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT---SKNQFSLKLSSV   85 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET---TTTEEEEEECSC
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeC---CCCEEEEEECCC
Confidence            35678999999999998765  5689999842  21   1   0          12344433221   112348999999


Q ss_pred             CCCCCeEEEEEEEcCC--c----eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCC-CeEEEEEEeccc-CCC-eEEE
Q psy670          171 TKDDGGNYRCNACNSI--G----ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESG-TLIQMKCKCSAK-PRP-EVKW  241 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~--~----~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v~W  241 (540)
                      +.+|+|.|.|.+.+..  +    .....+.|.|.....   .+|.+........+..| +.++|.|.+.+. |.+ .+.|
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W  162 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSA---SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSW  162 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCC---BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCC---CCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence            9999999999998421  1    122345677764211   23444321111224467 899999999884 776 9999


Q ss_pred             Ee-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCC--CCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          242 FK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIG--PDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       242 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      ++ +|..+..................+.|.|.....  +|.|.|+|.+.|..+.......+.+.
T Consensus       163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            99 888775410000001111122235788988886  78999999999998876555555443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=3.1e-16  Score=145.15  Aligned_cols=188  Identities=17%  Similarity=0.314  Sum_probs=122.1

Q ss_pred             CCceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEE
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      .|....+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                 ...++.......  .....|.|
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I  109 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTS--SNTAYLQL  109 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETT--TTEEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecC--CCeEEEEE
Confidence            34466778999999999998865  5789999953  1110                 012333322211  12347999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCC-----eeeeEEEEEeeccCC--------CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670          272 TDPIGPDSGTYRCNVKNEFGE-----SNANLNLNIEAEAEP--------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK  338 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~-----~~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~  338 (540)
                      .+++.+|+|.|.|.+.+..|.     ......|.|...+..        ...++.+...+....+.+|+.++|.|.+.+.
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            999999999999999998651     113345666553210        0123455556667788999999999999998


Q ss_pred             CCCeEEEEE--CCEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee-eEEEEEE
Q psy670          339 PMPEIVWFH--EGKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTL  403 (540)
Q Consensus       339 p~~~i~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l  403 (540)
                      | +.+.|++  +|..+.            ...++...  ..+.  ..+|.|.+++.+|+|.|+|.|.|..+. ...-..|
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l  264 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGS--GSGT--SYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKL  264 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEE
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEe--cCCC--EEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEE
Confidence            8 8999999  554331            12233322  1222  337999999999999999999985432 2334556


Q ss_pred             EEEE
Q psy670          404 NIEM  407 (540)
Q Consensus       404 ~V~~  407 (540)
                      .|..
T Consensus       265 ~V~~  268 (282)
T 1qok_A          265 ELKR  268 (282)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            6654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.70  E-value=4.8e-16  Score=141.84  Aligned_cols=174  Identities=15%  Similarity=0.275  Sum_probs=115.6

Q ss_pred             CCccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      ....+.+|++++|.|.+.+.  +.+.+.|+|..  ..+.                 ...++.+..+.   .....+|.|.
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~   90 (256)
T 3juy_B           14 GAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---SANTAYMELR   90 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred             CCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEec---CCCEEEEEEC
Confidence            45678899999999999773  66789999832  1110                 01234333221   1123479999


Q ss_pred             CCCCCCCeEEEEEEEcC------------CceeEEEEEEEEecCcCCC--------CCCCeeccCCceeecCCCCeEEEE
Q psy670          169 NPTKDDGGNYRCNACNS------------IGESNANIALNFQGGENGA--------GFAPSFIEKPRIIPNESGTLIQMK  228 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~~~~~--------~~~p~~~~~~~~~~~~~g~~~~l~  228 (540)
                      +++.+|+|.|.|.+.+.            .+.......|.|.......        ..++.+...+....+.+|++++|.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  170 (256)
T 3juy_B           91 SLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFS  170 (256)
T ss_dssp             SCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEE
T ss_pred             CCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEE
Confidence            99999999999999986            2333345567776532210        013456666778888999999999


Q ss_pred             EEecccCC-CeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          229 CKCSAKPR-PEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       229 C~~~~~p~-~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      |.+.+.+. +.+.|++.  +..+.            ...++.....  .  ....|.|.+++.+|+|.|.|.+.+..
T Consensus       171 C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          171 CRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS--G--TDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             EEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--T--TEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             EEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc--C--CEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            99998775 89999983  22211            1122222111  1  12469999999999999999998853

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.70  E-value=3.9e-16  Score=141.93  Aligned_cols=171  Identities=19%  Similarity=0.295  Sum_probs=110.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC-----Eee---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT-----KVI---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|+.     ..+         ....++....     .....+|.|.+++.+|+|
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   87 (250)
T 3esu_F           13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-----SGTDYSLTISNLEQEDIG   87 (250)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-----CCCEEEEEEccCChhhCE
Confidence            356789999999999999999999999943     111         0122332221     112348999999999999


Q ss_pred             EEEEEEEcCCcee-EEEEEEEEecCcCC------------CCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEE
Q psy670          177 NYRCNACNSIGES-NANIALNFQGGENG------------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKW  241 (540)
Q Consensus       177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~------------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W  241 (540)
                      .|.|.+.+..+.. .....|.|...+..            ...++.+...+....+.+|+.++|.|.+.+.+  .+.+.|
T Consensus        88 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  167 (250)
T 3esu_F           88 TYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNW  167 (250)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEE
T ss_pred             EEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEE
Confidence            9999999865532 23345666542100            00122333445556788999999999998866  788999


Q ss_pred             EeC--CEEeec-----------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          242 FKA--DKLVKE-----------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       242 ~~~--~~~l~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      +++  +..+..                 ..++.+.....  ....+|.|.+++.+|+|.|+|.+.+
T Consensus       168 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          168 VKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS--SSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG--GTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC--CCeEEEEECCCCcccCEEEEEEEec
Confidence            997  432211                 12222222111  1234799999999999999999997

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.70  E-value=1.5e-16  Score=141.48  Aligned_cols=177  Identities=15%  Similarity=0.270  Sum_probs=115.6

Q ss_pred             ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---eec--------------cCceEEEEecCCCeEEEEEEEeC
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VKE--------------SSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~~--------------~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ....+.+|++++|.|.+.+.+  .+.+.|++..  ..   +..              ..++.+...  .......|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~L~I~~   85 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD--NAKNSLYLQMSK   85 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC--SSSCEEEEEECS
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee--CCCCEEEEEECC
Confidence            346678999999999998765  5789999843  11   110              122322221  112335899999


Q ss_pred             CCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC--CeEEEEE
Q psy670          274 PIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM--PEIVWFH  347 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~--~~i~W~~  347 (540)
                      ++.+|+|.|.|.+.+..+.   ......|.|...+   ..+|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~  161 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES---ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGK  161 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC---CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCC---CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEec
Confidence            9999999999999986542   2233466665421   1245554433 2335689999999999986 76  6899999


Q ss_pred             CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ++..+... ........++. ...+.|.|.....+|.|.|+|.|.|..+...
T Consensus       162 ~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          162 SGKDITTV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSCEEE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCEecceE-ecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            98765210 00000111222 1234699998888999999999999987654

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.70  E-value=2.5e-16  Score=140.85  Aligned_cols=181  Identities=15%  Similarity=0.229  Sum_probs=114.5

Q ss_pred             ceeecCCCCeEEEEEEecccCC----CeEEEEeC--CEEe---e-c------------cCceEEEEecCCCeEEEEEEEe
Q psy670          215 RIIPNESGTLIQMKCKCSAKPR----PEVKWFKA--DKLV---K-E------------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p~----~~v~W~~~--~~~l---~-~------------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      ....+.+|++++|.|.+.+.|.    +.+.|++.  +..+   . .            ..++.+.....  .....|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~   85 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS--RDMVFMKIT   85 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT--TTEEEEEEC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC--CCeEEEEEc
Confidence            3456788999999999998764    78999984  2211   0 0            12333322211  123579999


Q ss_pred             CCCCCCcEEEEEEEEcCCC------C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-
Q psy670          273 DPIGPDSGTYRCNVKNEFG------E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-  341 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-  341 (540)
                      +++.+|+|.|.|.+.+..|      .   ......|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ 
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~  162 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV  162 (228)
T ss_dssp             SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC---CBCCEEEEECC-----CCSEEEEEEEEEEEBSSCC
T ss_pred             CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC---CCCCEEEEecccccccCCCCEEEEEEEccEeCCCE
Confidence            9999999999999998654      1   1123566665311   124555433322335689999999999986 777 


Q ss_pred             eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          342 EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       342 ~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      .|.|++++..+.....  ......+. ...+.|.|.....+| |.|+|.|.|..+.......+
T Consensus       163 ~v~W~~~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          163 TLTWNSGSLSSGVHTF--PAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEEGGGTCCTTEEEE--EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEeeCCcccCceEc--CceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            9999998875421111  11111111 123479999888856 99999999998876554443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.69  E-value=1e-16  Score=143.08  Aligned_cols=175  Identities=13%  Similarity=0.187  Sum_probs=112.8

Q ss_pred             eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                 ...++.+....  ......|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v   86 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD--LEDFVYLQMHKM   86 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecC--CCCEEEEEECCC
Confidence            45677899999999998866  6789999853  2110                 01233332221  112357999999


Q ss_pred             CCCCcEEEEEEEEcCCC-----C---eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eE
Q psy670          275 IGPDSGTYRCNVKNEFG-----E---SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EI  343 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i  343 (540)
                      +.+|+|.|.|.+.+..+     .   ......|.|...+   ..+|.+.. .+.. .+..|+.++|.|.+.+. |.+ .|
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v  162 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS---TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTV  162 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS---CBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC---CcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEE
Confidence            99999999999998754     1   1234566666421   11444433 3222 24679999999999986 776 99


Q ss_pred             EEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          344 VWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       344 ~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      .|++++..+... ........++. ...+.|.|.....+| |.|+|.|.|..+...
T Consensus       163 ~W~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          163 SWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             ECCTTSCCTTCE-ECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEecCCCcCCeE-ecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            999998754211 00000111222 223479999988888 999999999776544

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.69  E-value=9.2e-16  Score=132.32  Aligned_cols=163  Identities=15%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             eecCCCCeEEEEEEecccCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          217 IPNESGTLIQMKCKCSAKPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       217 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      +.+..|++++|.|.+ +.|.+  .|.|++.+..+   .+...  .    .....|.|.+++.+|+|.|.|.+.+..+...
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~   86 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--D----TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ   86 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--E----SSEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--c----CCccEEEECccCcccCceEEEEEEeCCCceE
Confidence            577899999999999 87777  99999865433   11111  1    1124799999999999999999999888777


Q ss_pred             eeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CC----CeEEEEECCEEccCCCceEEEE------
Q psy670          295 ANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PM----PEIVWFHEGKELQQTDRISWNV------  362 (540)
Q Consensus       295 ~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~----~~i~W~~~~~~~~~~~~~~~~~------  362 (540)
                      ..+.|.|..       +|.... .+.  .+..|+.+ |+|.+.+. |.    +.|.|++++..+..........      
T Consensus        87 ~~~~ltV~~-------~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~  156 (210)
T 1gsm_A           87 HTVQLLVYA-------FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE  156 (210)
T ss_dssp             EEEEEEEEB-------CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred             EEEEEEEEe-------cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence            788888876       343322 222  45567888 99999985 64    3899999999995432111011      


Q ss_pred             E---ec-CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          363 T---LK-GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       363 ~---~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      .   .. -...+++|.+.....+|.+.|+|+|.+..-....
T Consensus       157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence            0   01 1122346677677777778999999997644433

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.69  E-value=5.4e-16  Score=143.56  Aligned_cols=185  Identities=16%  Similarity=0.332  Sum_probs=119.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.                 ...++.+....   .....+|.|.+
T Consensus        35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~  111 (282)
T 1qok_A           35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDT---SSNTAYLQLSS  111 (282)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEET---TTTEEEEEECS
T ss_pred             CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEec---CCCeEEEEECc
Confidence            45688999999999998775  5789999953  1110                 01333333211   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc---ee--EEEEEEEEecCcCC--------CCCCCeeccCCceeecCCCCeEEEEEEecccCC
Q psy670          170 PTKDDGGNYRCNACNSIG---ES--NANIALNFQGGENG--------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPR  236 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~---~~--~~~~~l~v~~~~~~--------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  236 (540)
                      ++.+|+|.|.|.+.+..|   ..  ...+.|.|...+..        ...++.+...+....+.+|++++|.|.+.+.+ 
T Consensus       112 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-  190 (282)
T 1qok_A          112 LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-  190 (282)
T ss_dssp             CCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-
T ss_pred             CChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-
Confidence            999999999999998865   11  23346667653210        00134455556677788999999999999988 


Q ss_pred             CeEEEEe--CCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEE
Q psy670          237 PEVKWFK--ADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNI  301 (540)
Q Consensus       237 ~~v~W~~--~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v  301 (540)
                      +.+.|++  ++..+..            ..++.....  .  ....|.|.+++.+|+|.|+|.+.+.... ......|.|
T Consensus       191 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  266 (282)
T 1qok_A          191 SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS--G--TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL  266 (282)
T ss_dssp             SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--T--TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC--C--CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence            8999999  5543310            122222111  1  1247999999999999999999875332 223345555


Q ss_pred             ee
Q psy670          302 EA  303 (540)
Q Consensus       302 ~~  303 (540)
                      ..
T Consensus       267 ~~  268 (282)
T 1qok_A          267 KR  268 (282)
T ss_dssp             C-
T ss_pred             ec
Confidence            43

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.69  E-value=2.2e-16  Score=133.93  Aligned_cols=155  Identities=14%  Similarity=0.168  Sum_probs=107.9

Q ss_pred             eeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCc--e--------EEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          216 IIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSK--I--------KIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~--~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+.+..|++++|.|.+.. |.+.|.|++++..+.....  .        +.......    ..|.|.+++.+|+|.|.|.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~----~sL~I~~v~~~DsG~Y~C~   78 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS----GSLTIYNLTSSDEDEYEME   78 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT----CCEEECSCCGGGCEEEEEE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCC----CeEEECCCChhhCceEEEE
Confidence            345668999999999854 7889999998875432111  0        01111111    2699999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec
Q psy670          286 VKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK  365 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  365 (540)
                      +.+..+  ...+.|.|...+    ..|.+.....       . ..|.|.+.+.|.|.+.|+++|..+......       
T Consensus        79 ~~n~~~--~~~~~L~V~~~~----~~p~i~~~~~-------~-~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~-------  137 (171)
T 1ccz_A           79 SPNITD--TMKFFLYVLEMV----SKPMIYWECS-------N-ATLTCEVLEGTDVELKLYQGKEHLRSLRQK-------  137 (171)
T ss_dssp             CTTCCS--CEEEEEEEECCC----CCCEEEEETT-------T-TEEEEECSSCSSCEEEEEETTEEEEEESSS-------
T ss_pred             EeCCCC--cEEEEEEEECcC----CCCEEEEecC-------C-cEEEEEeCCCCCcEEEEEECCEECcCCcce-------
Confidence            998877  566677776532    1344432221       1 279999999899999999999887643221       


Q ss_pred             CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       366 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                            .|.+.  ...|+|.|+|.|.|..+....+..|.
T Consensus       138 ------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          138 ------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             ------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             ------EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence                  34443  36789999999999999877766553

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.69  E-value=4.8e-16  Score=141.84  Aligned_cols=175  Identities=17%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             CCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EEe---e---------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KLV---K---------ESSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~l---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      .+....+.+|++++|.|.+.+.  +.+.+.|++..  ...   .         ...++.....  .  ....|.|.+++.
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~   83 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKS--G--TSASLAITGLQS   83 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE--T--TEEEEEECSCCG
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEcc--C--CEEEEEECCCCh
Confidence            3445778899999999999876  77889999842  111   0         1122222211  1  124799999999


Q ss_pred             CCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCC--------------CCCeEEeCCceEEeeCCCeEEEEEEEEccC
Q psy670          277 PDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEG--------------DPPTFIEKPKIRSEQGGKLVVMECKVKAKP  339 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p  339 (540)
                      +|+|.|.|.+.+..+.   ......|.|...+....              ..+.+.. +....+.+|++++|.|.+.+.+
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~  162 (256)
T 3ux9_B           84 EDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFT  162 (256)
T ss_dssp             GGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSC
T ss_pred             hhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCc
Confidence            9999999999986542   22345566654321100              0112333 3344588999999999999876


Q ss_pred             --CCeEEEEEC--CEEc------c-----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          340 --MPEIVWFHE--GKEL------Q-----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       340 --~~~i~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                        .+.+.|+++  +..+      .           ...++...  .++.....+|.|.+++.+|+|.|+|.|.|..
T Consensus       163 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          163 FSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTIS--RDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             GGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEE--EETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEE--ecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence              789999986  3211      0           01133322  2222334479999999999999999999964

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.69  E-value=8.6e-16  Score=140.24  Aligned_cols=176  Identities=15%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             CCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E--Eee--------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          213 KPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K--LVK--------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~--~l~--------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      .+....+.+|++++|.|.+.+.  +.+.+.|++..  .  .+.              ...++.+.....  .....|.|.
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~   91 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS--KNQVYLQLK   91 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG--GTEEEEEEC
T ss_pred             CCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC--CceEEEEEC
Confidence            3445567899999999999884  47789999832  1  111              011222222111  123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC----eeeeEEEEEeeccC-------CCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCC
Q psy670          273 DPIGPDSGTYRCNVKNEFGE----SNANLNLNIEAEAE-------PEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMP  341 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~----~~~~~~l~v~~~~~-------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~  341 (540)
                      +++.+|+|.|+|.+.+..+.    ......|.|.....       ....++.+...+....+.+|++++|.|.+.+.+.+
T Consensus        92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  171 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS  171 (257)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred             CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence            99999999999999986221    23345566654310       00124566666777889999999999999998877


Q ss_pred             -eEEEEEC--CEEccC------------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          342 -EIVWFHE--GKELQQ------------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       342 -~i~W~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                       .+.|++.  +..+..            ..++..  ...+.  ..+|.|.+++.+|+|.|.|.|.+..
T Consensus       172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSG--SGSGT--SYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEE--ecCCC--EEEEEECCCChHHCEEEEEEEccCC
Confidence             8999983  222110            122222  12222  3379999999999999999998854

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.69  E-value=1.3e-16  Score=135.25  Aligned_cols=157  Identities=11%  Similarity=0.129  Sum_probs=105.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcce-----EEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT-----YLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      +.+.+|++|+|.|.+ +.|.+.|.|+|++..+...............+.     ...+|.|.+++.+|+|.|+|.+.+..
T Consensus         5 v~~~~G~~VtL~c~~-~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEcCCCEEEcCCC-CCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence            457789999999998 447889999998865421100000000000000     01279999999999999999998877


Q ss_pred             ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          187 GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       187 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      +  ...+.|.|.....    .|.+.....     .   ..|.|.+.+.|.+.+.|++++..+......            
T Consensus        84 ~--~~~~~L~V~~~~~----~p~i~~~~~-----~---~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~------------  137 (171)
T 1ccz_A           84 D--TMKFFLYVLEMVS----KPMIYWECS-----N---ATLTCEVLEGTDVELKLYQGKEHLRSLRQK------------  137 (171)
T ss_dssp             S--CEEEEEEEECCCC----CCEEEEETT-----T---TEEEEECSSCSSCEEEEEETTEEEEEESSS------------
T ss_pred             C--cEEEEEEEECcCC----CCEEEEecC-----C---cEEEEEeCCCCCcEEEEEECCEECcCCcce------------
Confidence            7  5667777775321    333322111     1   279999999899999999999887643321            


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                       .+.+.+  ..|.|.|+|.|.|..+.......
T Consensus       138 -~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~  166 (171)
T 1ccz_A          138 -TMSYQW--TNLRAPFKCKAVNRVSQESEMEV  166 (171)
T ss_dssp             -EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             -EEEEec--cCCCceEEEEEEcccCcccceeE
Confidence             233333  67889999999999887655543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.69  E-value=4.6e-16  Score=140.53  Aligned_cols=171  Identities=18%  Similarity=0.254  Sum_probs=113.3

Q ss_pred             CccccCCCeEEEEEEEeecC----CCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP----MPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p----~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ...+.+|++++|.|.+.+.|    .+.+.|+|++  ..   +.         ...++.+..     .....+|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~   84 (240)
T 1moe_A           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-----SRTDFTLIIDPVEA   84 (240)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCG
T ss_pred             eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-----cCCeEEEEEcCCCh
Confidence            35688999999999998887    7789999952  21   10         122333321     11234899999999


Q ss_pred             CCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--CEE
Q psy670          173 DDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--DKL  247 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~  247 (540)
                      +|+|.|+|.+.+..+. ....+.|.|...+... .++.+...+....+.+|+.++|.|.+.+.|  .+.+.|+++  +..
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~-~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  163 (240)
T 1moe_A           85 DDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGG-GGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG  163 (240)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCEEEEECCCSCCC-CCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             hhCEEEEEEEccCCceeecCCEEEEEecCCCCC-CceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence            9999999999987554 3344566666432110 122233445566788999999999999876  468999995  222


Q ss_pred             ee-----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          248 VK-----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       248 l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      +.                 ...++......  ......|.|.+++.+|+|.|+|.|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          164 LEWIGRIDPANGNSKYVPKFQGKATITADT--SSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             cEEEEEEcccCCccccCccccccEEEEEcc--cCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            11                 01122222211  112347999999999999999999853

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.69  E-value=8.3e-16  Score=140.18  Aligned_cols=175  Identities=15%  Similarity=0.294  Sum_probs=114.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---e----------cCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---I----------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|..  ..   +          ....++.....   ......+|.|.+++.+|+
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C           12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS---KSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEE---TTTTEEEEEESSCCGGGC
T ss_pred             eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEc---CCCCEEEEEECCCCcccC
Confidence            456889999999999988899999999832  11   1          01223332211   112234899999999999


Q ss_pred             eEEEEEEEcCCce----eEEEEEEEEecCc-------------CCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCe
Q psy670          176 GNYRCNACNSIGE----SNANIALNFQGGE-------------NGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPE  238 (540)
Q Consensus       176 G~Y~C~~~~~~~~----~~~~~~l~v~~~~-------------~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  238 (540)
                      |.|+|.+.+..+.    ....+.|.|....             .....++.+...+....+.+|+.++|.|.+.+. .+.
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~  167 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY  167 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence            9999999987542    2234556666411             001125567777777788899999999999876 678


Q ss_pred             EEEEeCC--EEe---ec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          239 VKWFKAD--KLV---KE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       239 v~W~~~~--~~l---~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +.|++..  ..+   ..            ..++....   .......|.|.+++.+|+|.|+|.+.|..|.
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR---TTQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC---CSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe---CCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            9999832  111   00            01111111   0112237999999999999999999987664

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.69  E-value=2.3e-13  Score=143.55  Aligned_cols=337  Identities=13%  Similarity=0.104  Sum_probs=186.8

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCC-CeeEEEEEEccCcceeeeE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSD-SGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~~~~~~~~~~~~~   86 (540)
                      +.|.+.|.|.      +.+.|.|+|.++....+.               .|.|..+...+ ++.|+|.+.+..|..... 
T Consensus        96 v~c~~~g~P~------p~i~W~k~g~~~~~~~~~---------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-  153 (731)
T 2v5y_A           96 VYVKVNNGPL------GNPIWNISGDPTRTWNRA---------------ELAISTFWPNFYQVIFEVITSGHQGYLAID-  153 (731)
T ss_dssp             EEEEETTCCC------CSEEEEECCCCCSSCEEE---------------EEEECCCTTSCEEEEEEEEECSSCCEEEEC-
T ss_pred             EEEecCCCCc------cceeEEEeCCcCCceeEE---------------EEEEeecCCCceEEEEEEEecCCceEEEEe-
Confidence            4599999998      999999999887543222               33344332222 355666554444432211 


Q ss_pred             EEEEeecCCccccCCCCCCCCC-CCCccccCCCeEEEEEEEeecCCCceE-EE--eCCEeecCCCceEEEEeecCcceEE
Q psy670           87 NLNFSEEDGKLKVPGGKAPRFP-KKPTIHQDGDLLVMECVLEASPMPDII-WY--QGTKVIEDTGRIKMSKKSIGKDTYL  162 (540)
Q Consensus        87 ~l~v~~~~~~~~i~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~  162 (540)
                      .+.+....      ...+|.+. .....+.+|++++|.|.+.|.|.+.+. |+  ++|..+.....     .........
T Consensus       154 ~v~~~~~~------~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~-----~~~~~~~~~  222 (731)
T 2v5y_A          154 EVKVLGHP------CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI-----KVTSSRRFI  222 (731)
T ss_dssp             CBEEESSC------CSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE-----EECCSSEEE
T ss_pred             eEEeeecc------cccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce-----EEeccccce
Confidence            11111110      11122222 234578899999999999999999988 88  67776643211     111223334


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCce-eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc---CC-C
Q psy670          163 LRLEINNPTKDDGGNYRCNACNSIGE-SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK---PR-P  237 (540)
Q Consensus       163 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~-~  237 (540)
                      .+|.|.++...|+|.|+|.|.|..|. .+..+.|.|..       +|.+...+....+ ....+.|.|.....   .+ .
T Consensus       223 ~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~-------~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~  294 (731)
T 2v5y_A          223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE-------PPVPIAPPQLASV-GATYLWIQLNANSINGDGPIV  294 (731)
T ss_dssp             EEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEEC-------CCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCC
T ss_pred             EEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEec-------CCCCCCCcceecc-CCceEEEEeCCcccCCCCccE
Confidence            69999999999999999999999997 56667777775       3333333333333 35678888876432   11 1


Q ss_pred             --eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE--cCCCCeeeeEEEEEeeccCCCCCCCe
Q psy670          238 --EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK--NEFGESNANLNLNIEAEAEPEGDPPT  313 (540)
Q Consensus       238 --~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~l~v~~~~~~~~~~p~  313 (540)
                        .|.|...+...      ........    ..+.|.++...+...|+|.|.  |..|....+..+.+.........+|.
T Consensus       295 ~Y~v~~~~~~~~~------~~~~~~~~----~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~  364 (731)
T 2v5y_A          295 AREVEYCTASGSW------NDRQPVDS----TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPR  364 (731)
T ss_dssp             EEEEEEEESSSSC------EEEEECCS----SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCE
T ss_pred             EEEEEEEECCCCc------eEEeccCc----ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCc
Confidence              46676543211      11111111    268899999999999999999  88876543333333322211111232


Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEcc-----C--CCeEEEEECCEEccCCCceEE---EEEecCCeeEEEEEEcCCCCCCC
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAK-----P--MPEIVWFHEGKELQQTDRISW---NVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~-----p--~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      .+.    ........+.|.......     +  ...|.|...+.    ......   .......  ...+.|.++.....
T Consensus       365 ~~~----~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~----~~~~~~~~~~~~~~~~--~~~~~i~~L~p~t~  434 (731)
T 2v5y_A          365 KLE----VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG----GQEQVREEVSWDTENS--HPQHTITNLSPYTN  434 (731)
T ss_dssp             EEE----EEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS----SSEEEEEEEECCSSCS--SCEEEECSCCSSCE
T ss_pred             eeE----EEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC----CCCccceeEEEEecCC--cceEEECCCCCCCE
Confidence            111    112234456665554211     0  11344433221    000000   0000111  11678888888777


Q ss_pred             eeEEEEEEcCCeeeEEEEEEEEE
Q psy670          384 GLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       384 G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      ..|+..|.|..|... +..+.+.
T Consensus       435 Y~~~V~A~n~~G~s~-S~~~~~~  456 (731)
T 2v5y_A          435 VSVKLILMNPEGRKE-SQELIVQ  456 (731)
T ss_dssp             EEEEEEEECSSCEEE-CCCEEEE
T ss_pred             EEEEEEEEcCCCCCC-CceEEEE
Confidence            778888999988753 4444443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.68  E-value=5.6e-16  Score=139.92  Aligned_cols=182  Identities=16%  Similarity=0.259  Sum_probs=115.6

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--------------EEeec---cCceEEEEecCCCeEEEEEEEe
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--------------KLVKE---SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--------------~~l~~---~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +...+..+.+.+|+++.|.|.+.+ +.+.+.|++..              .....   ..++.+...   ......|.|.
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~sL~I~   80 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF---DDYHSEMNMS   80 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC---TTSCEEEEEC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC---CCCEEEEEEC
Confidence            344566677889999999999876 77799999821              11111   123332221   1123479999


Q ss_pred             CCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEE
Q psy670          273 DPIGPDSGTYRCNVKNEF---GESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWF  346 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~  346 (540)
                      +++.+|+|.|.|.+.+..   ........+.|...... ..+|.+. ..+....+..|+.++|.|.+.+ .|.+ .+.|+
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  159 (240)
T 3q5y_A           81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRN-VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW  159 (240)
T ss_dssp             SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccC-CCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence            999999999999998321   22233445666531111 1144443 3344444556899999999998 5666 78999


Q ss_pred             ECCEEccCCCceE--EEEEecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670          347 HEGKELQQTDRIS--WNVTLKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGE  396 (540)
Q Consensus       347 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~  396 (540)
                      ++|..+.......  .....++. ...+.|.|.....+| .|.|+|.|.|....
T Consensus       160 ~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          160 VNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             ETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            9999886543211  01111221 123468999888888 67999999997654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.68  E-value=9.2e-18  Score=150.98  Aligned_cols=172  Identities=15%  Similarity=0.213  Sum_probs=94.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Eee---c---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|++  ..+   .         ...++...     .....++|.|.+++.+|+|
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G  106 (233)
T 3bqu_C           32 SLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSS-----GYGTDFVFTIENMLSEDVA  106 (233)
T ss_dssp             BC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCC-----EEEEEEEEC-----CCCCS
T ss_pred             eEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEee-----ccCCEEEEEECCCCHHHCE
Confidence            346789999999999988877889999853  111   0         01122111     1233458999999999999


Q ss_pred             EEEEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCCEEeeccCc
Q psy670          177 NYRCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKADKLVKESSK  253 (540)
Q Consensus       177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~l~~~~~  253 (540)
                      .|.|.+.+..+.. .....|.|....    .+|.+...+......+|+.++|.|.+.+. |.+ .+.|+++|..+.....
T Consensus       107 ~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  182 (233)
T 3bqu_C          107 DYYCLQSDNLPYTFGGGTNLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL  182 (233)
T ss_dssp             EEEEEECSSSSCCBCCCCBC---CCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred             EEEEEEecCCceeecCCEEEEEeCCC----CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence            9999998875432 222344554311    24555443332223369999999999884 544 7999999987755411


Q ss_pred             eEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          254 IKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       254 ~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      ... ......+  ...+.|.|..+..+|+|.|+|.|.|...
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            111 1111222  2345788999888999999999998744

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.68  E-value=1.8e-15  Score=137.15  Aligned_cols=177  Identities=16%  Similarity=0.313  Sum_probs=112.7

Q ss_pred             ccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEE
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      ...+..+.+.+|++++|.|.+.+.+     .+.+.|+++.  ..   +..         ..++.....    .....|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~L~I   80 (247)
T 1svz_A            5 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS----GTDFTLKI   80 (247)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE----TTEEEEEE
T ss_pred             EecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccC----CCEEEEEE
Confidence            3446677888999999999998877     6789999842  21   110         122222211    11247999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCC------CCCCCeEEeCCceEEeeCCCeEEEEEEEEccC--CCe
Q psy670          272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEP------EGDPPTFIEKPKIRSEQGGKLVVMECKVKAKP--MPE  342 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~------~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p--~~~  342 (540)
                      .+++.+|+|.|.|.+.+..+. ......|.|...+..      ...++..+..+....+.+|+.++|.|.+.+.+  .+.
T Consensus        81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  160 (247)
T 1svz_A           81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYS  160 (247)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred             CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcE
Confidence            999999999999999987543 223355666543210      00122233333334588999999999999875  568


Q ss_pred             EEEEECC--EEc------c-----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          343 IVWFHEG--KEL------Q-----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       343 i~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      +.|++++  ..+      .           ...++....  +......+|.|.+++.+|+|.|.|.|.|.
T Consensus       161 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          161 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSL--DTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEE--ecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            9999963  111      0           022332221  11222348999999999999999999985

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.68  E-value=6e-16  Score=138.68  Aligned_cols=186  Identities=12%  Similarity=0.203  Sum_probs=114.0

Q ss_pred             ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EE---ee-------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KL---VK-------------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---l~-------------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ....+.+|++++|.|.+.+.+  ...+.|++..  ..   +.             ...++.+....  ......|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~I~~v   85 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT--SKNQFSLKLSSV   85 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeC--CCCEEEEEECCC
Confidence            345678899999999998764  5689999842  21   10             01233332221  112347999999


Q ss_pred             CCCCcEEEEEEEEcCC--CC----eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCC-CeEEEEEEEEcc-CCC-eEE
Q psy670          275 IGPDSGTYRCNVKNEF--GE----SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGG-KLVVMECKVKAK-PMP-EIV  344 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~--~~----~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g-~~v~l~C~~~~~-p~~-~i~  344 (540)
                      +.+|+|.|.|.+.+..  +.    ......|.|...+   ..+|.+.. .+. ..+..| +.++|.|.+.+. |.+ .+.
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~  161 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS---ASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFS  161 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC---CBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCC---CCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEE
Confidence            9999999999998422  11    2234566665421   12455443 222 234467 999999999985 776 999


Q ss_pred             EEE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCC--CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          345 WFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRK--EDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       345 W~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |++ +|..+.. .........++. ...+.|.|.....  +|.|.|+|.|.|..+.......+.|..
T Consensus       162 W~~~~g~~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          162 WKYKNNSDISS-TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             EEETTSCEECC-EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             EEcCCCCceee-EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            999 8887754 100000011221 1234789988887  789999999999998876666665543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.68  E-value=2.5e-16  Score=142.70  Aligned_cols=183  Identities=15%  Similarity=0.234  Sum_probs=116.0

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--------------CCEEeecc----CceEEEEecCCCeEEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--------------ADKLVKES----SKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--------------~~~~l~~~----~~~~~~~~~~~~~~~~~l~  270 (540)
                      .+...+..+.+.+|++++|.| ..+.+.+.+.|++              ++......    .++.+...   ......|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~sL~   79 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP---DGSYFTLK   79 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC---TTSCEEEE
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec---cCceEEEE
Confidence            344556677888999999999 6667888999998              22211111    23322211   12235899


Q ss_pred             EeCCCCCCcEEEEEEEEcCC----CCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEc-cCCC-eE
Q psy670          271 ITDPIGPDSGTYRCNVKNEF----GESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKA-KPMP-EI  343 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i  343 (540)
                      |.+++.+|+|.|.|.+.+..    ........+.|...... ..+|.+ +..+....+..|+.++|.|.+.+ .|.+ .+
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  158 (245)
T 4ei6_B           80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  158 (245)
T ss_dssp             ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCC-CCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEE
Confidence            99999999999999999532    22334455666531111 114443 33344444556999999999998 4545 89


Q ss_pred             EEEECCEEccCCCceEEEEE------ecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670          344 VWFHEGKELQQTDRISWNVT------LKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGE  396 (540)
Q Consensus       344 ~W~~~~~~~~~~~~~~~~~~------~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~  396 (540)
                      .|+++|..+...........      .++. ...+.|.|.....+| .|.|+|.|.|....
T Consensus       159 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          159 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            99999998865322110000      0121 122468888887778 99999999997644

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.68  E-value=9.3e-18  Score=150.97  Aligned_cols=180  Identities=16%  Similarity=0.288  Sum_probs=97.4

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEe---ec---------cCceEEEEecCCCeEEEEEEEeCC
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLV---KE---------SSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l---~~---------~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      .+...+....+.+|++++|.|.+.+.|.+.+.|++++  ..+   ..         ..++..    ........|.|.++
T Consensus        25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~L~I~~v  100 (233)
T 3bqu_C           25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS----SGYGTDFVFTIENM  100 (233)
T ss_dssp             CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC----CEEEEEEEEC----
T ss_pred             eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe----eccCCEEEEEECCC
Confidence            3444466677889999999999988877789999853  111   00         011110    01122347999999


Q ss_pred             CCCCcEEEEEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEECCEE
Q psy670          275 IGPDSGTYRCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHEGKE  351 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~  351 (540)
                      +.+|+|.|.|.+.+..+.. .....+.|....    .+|.+...+.......|+.++|.|.+.+. |.+ .+.|+++|..
T Consensus       101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~----~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  176 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRAD----AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE  176 (233)
T ss_dssp             -CCCCSEEEEEECSSSSCCBCCCCBC---CCC----BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC---
T ss_pred             CHHHCEEEEEEEecCCceeecCCEEEEEeCCC----CCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee
Confidence            9999999999999875532 222344553321    14555443322223469999999999985 443 7999999988


Q ss_pred             ccCCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          352 LQQTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       352 ~~~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +............  ++. ...+.|.|.....+|+|.|+|.|.|....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          177 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             --CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            7654111111111  111 23457999998889999999999997654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.68  E-value=5.6e-17  Score=145.27  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=115.2

Q ss_pred             cCCceeecCCCCeEEEEEEecc-cCC--CeEEEEeCCEEe-eccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          212 EKPRIIPNESGTLIQMKCKCSA-KPR--PEVKWFKADKLV-KESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~l-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      ..+....+..|+.++|.|.+.+ +|.  ..+.|+++|..+ ...........+......+.|.|.+++.+|.|.|+|.+.
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            3455556678999999999988 464  499999998876 322221111111122234579999999999999999999


Q ss_pred             cCCCCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEE--EE
Q psy670          288 NEFGESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISW--NV  362 (540)
Q Consensus       288 ~~~~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~--~~  362 (540)
                      +..+..  .+.+.|..... ...+|.+.. .+....+ .+..++|.|.+.|. | .+.|.|+++|..+........  ..
T Consensus        98 ~~~~~~--~~~~~v~~~~~-~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~  173 (231)
T 2w59_A           98 HEELPL--PLSKSVYRNTG-PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLP  173 (231)
T ss_dssp             CTTCSS--CEEEEECCCCS-CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEE
T ss_pred             cCCCCC--ceEEEEecCCC-CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCcccc
Confidence            976543  23334432100 112444432 2221112 35679999999985 4 368999999999876542111  11


Q ss_pred             E--------ec-CC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          363 T--------LK-GD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       363 ~--------~~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .        .+ +. ...+.|.|.....+|.|.|+|.|.|....
T Consensus       174 ~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          174 EERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             CCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             CcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            1        12 22 23457889888888899999999998754

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.68  E-value=6.5e-16  Score=117.65  Aligned_cols=95  Identities=25%  Similarity=0.505  Sum_probs=81.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ||.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......++.....++  ..+|.|.+++.+|+|.|+|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD--LTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS--EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccc--eEEEEEcCCCccCCEEEEEEE
Confidence            677777788889999999999999999999999999999999876554444444443  338999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|+.
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998874

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.67  E-value=4.4e-16  Score=141.67  Aligned_cols=184  Identities=15%  Similarity=0.241  Sum_probs=115.3

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--E---ee--------------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--K---VI--------------EDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~---~~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.  +...+.|||..  .   .+              ....++.+..+.   ....++|.|.+
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN---AKNTLFLQMSS   85 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG---GGTEEEEEECS
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC---CCCEEEEEECC
Confidence            4568899999999999763  35689999832  1   11              011344443322   12345799999


Q ss_pred             CCCCCCeEEEEEEEcCC----ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670          170 PTKDDGGNYRCNACNSI----GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK  243 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~  243 (540)
                      ++.+|+|.|.|.+.+..    ......+.|.|....   ..+|.+...+....+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC---CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC---CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            99999999999998752    222334566665211   12555543333444567999999999988 7766 899999


Q ss_pred             CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          244 ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      ++..+........ .........+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       163 ~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          163 GSLSSGVHTFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GTBCTTEEECCCE-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeecceEeCCcc-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            8864321110001 111112223579999999999 99999999987766555555443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.67  E-value=1e-15  Score=141.29  Aligned_cols=172  Identities=15%  Similarity=0.243  Sum_probs=110.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCE-----eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTK-----VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|++.     .+.         ...++....     .....+|.|.+++.+|+|
T Consensus        21 ~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG   95 (276)
T 3auv_A           21 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFA   95 (276)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-----cCCeEEEEEccCChhhCE
Confidence            3568899999999999888888999998542     111         122333321     112348999999999999


Q ss_pred             EEEEEEEcCCce-eEEEEEEEEecCcCC-------CCCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeCC-
Q psy670          177 NYRCNACNSIGE-SNANIALNFQGGENG-------AGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD-  245 (540)
Q Consensus       177 ~Y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~-  245 (540)
                      .|.|.+.+..+. ......|.|...+..       ...++.....+....+.+|+.++|.|.+.+.+  .+.+.|++++ 
T Consensus        96 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  175 (276)
T 3auv_A           96 TYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAP  175 (276)
T ss_dssp             EEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECT
T ss_pred             EEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCC
Confidence            999999987543 223345666542210       00012223334566788999999999999866  5889999963 


Q ss_pred             -EEe---e--------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          246 -KLV---K--------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       246 -~~l---~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                       ..+   .              ...++.+....  ......|.|.+++.+|+|.|+|.+.|.
T Consensus       176 g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          176 GKCLEWVAGITPAGGYTYYADSVKGRFTISADT--SKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             TCCEEEEEEECGGGCCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCcEEEEEEeccCCccccccccCCcEEEEecC--CCcEEEEEECCCChhHCEEEEEEEEcC
Confidence             211   0              01222222211  112247999999999999999999997

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.67  E-value=5.9e-17  Score=145.05  Aligned_cols=208  Identities=13%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             eEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee-cCCCCeEEEEEEecccC----CCeEEEEeCCEEeec
Q psy670          176 GNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGTLIQMKCKCSAKP----RPEVKWFKADKLVKE  250 (540)
Q Consensus       176 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~  250 (540)
                      |.|.|.+.+..+.......  +.       .+..++..+.... +..|+.+.|.|.+.+++    ...|+|+++|..+..
T Consensus         1 ~~~~~~~~~~~~~c~~~~~--~~-------~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~   71 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPEL--LG-------GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   71 (240)
T ss_dssp             -------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC
T ss_pred             CceeeeeeecCCCCCcccc--CC-------CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCC
Confidence            7899999886653111100  00       1223334444444 56799999999999853    347999999998854


Q ss_pred             cCceEEEEe-cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE
Q psy670          251 SSKIKIIVN-EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV  329 (540)
Q Consensus       251 ~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v  329 (540)
                      ......... +......+.|.|.....+|.|.|+|.+.+..+.......+....   ....+|.+...+.......|+.+
T Consensus        72 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~---~~~~~P~V~v~~~~~~~~~g~~~  148 (240)
T 4acp_A           72 AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK---GQPREPQVYTLPPSRDELTKNQV  148 (240)
T ss_dssp             CEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEE
T ss_pred             ceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC---CCCCCCEEEEECCChHHhcCCce
Confidence            321111111 12222335677777666788999999999866432222222110   01125555444332222348999


Q ss_pred             EEEEEEEc-cCCC-eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          330 VMECKVKA-KPMP-EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       330 ~l~C~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +|.|.+.+ +|.+ .+.|+++|..+............++.. ..+.|.+......+.|.|+|+|.+..-
T Consensus       149 ~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          149 SLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            99999998 4554 799999999875321111111122222 234677776666678999999999764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.67  E-value=1.7e-15  Score=138.66  Aligned_cols=181  Identities=15%  Similarity=0.275  Sum_probs=116.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccC------CCeEEEEeC--CEE---eec---------cCceEEEEecCCCeEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKP------RPEVKWFKA--DKL---VKE---------SSKIKIIVNEQDDTYE  266 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~--~~~---l~~---------~~~~~~~~~~~~~~~~  266 (540)
                      .+.+...+..+.+.+|++++|.|.+.+.+      .+.+.|++.  +..   +..         ..++.....    ...
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~----~~~   80 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS----GTD   80 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE----TTE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC----CCE
Confidence            44555667778888999999999998876      578999984  221   110         123322211    112


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccC------------CCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAE------------PEGDPPTFIEKPKIRSEQGGKLVVMEC  333 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~------------~~~~~p~~~~~~~~~~~~~g~~v~l~C  333 (540)
                      ..|.|.+++.+|+|.|.|.+.+..+. ......|.|...+.            ....++..+..+....+.+|+.++|.|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  160 (264)
T 2gjj_A           81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC  160 (264)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence            47999999999999999999987542 22335666654320            000012222223334688999999999


Q ss_pred             EEEccCC--CeEEEEECC--EE---cc----C----------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          334 KVKAKPM--PEIVWFHEG--KE---LQ----Q----------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       334 ~~~~~p~--~~i~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      .+.+.+.  +.+.|+++.  ..   +.    .          ..++.+..  +......+|.|.+++.+|+|.|.|.|.|
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n  238 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV--DTSSSTAFMQLNSLTSEDSADYYCVRSG  238 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE--cCCCCEEEEEECcCCcccCEEEEEEEec
Confidence            9998764  799999863  21   10    0          12222222  1222245899999999999999999999


Q ss_pred             C
Q psy670          393 F  393 (540)
Q Consensus       393 ~  393 (540)
                      .
T Consensus       239 ~  239 (264)
T 2gjj_A          239 N  239 (264)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.67  E-value=6.7e-17  Score=142.26  Aligned_cols=173  Identities=14%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             CCCCeEEEEEEecccC----CCeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          220 ESGTLIQMKCKCSAKP----RPEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       220 ~~g~~~~l~C~~~~~p----~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      .+|+.+.|.|.+.+.+    ...|.|++++..+........ .....+..  ...|.|.....+|+|.|+|.+.|..+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~-~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR-EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCC-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCc-eeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            6899999999998864    348999999987754321100 11112222  1234433333345999999999987754


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCe-eE
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YH  370 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (540)
                      .....+.+.   .....+|.+...+.......|..+.|.|.+.|. |. +.|.|+++|..+............++.. ..
T Consensus        95 ~~~~~v~~~---~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~  171 (207)
T 1l6x_A           95 PIEKTISKA---KGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY  171 (207)
T ss_dssp             CEEEEECCC---CSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE
T ss_pred             ceEEEeccC---CCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEE
Confidence            333223210   001125554433222112246679999999985 54 4899999999875322111111222221 23


Q ss_pred             EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          371 IRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       371 ~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +.|.|.....+|.|.|+|.|.|....
T Consensus       172 s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          172 SKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            35677766667899999999998643

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.67  E-value=6.9e-16  Score=140.61  Aligned_cols=174  Identities=14%  Similarity=0.254  Sum_probs=111.7

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                 ...++.+..+.   .....+|.|.+
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   91 (261)
T 2xqy_G           15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK---SSSTVYIQLSS   91 (261)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC---CCCEEEEEEcC
Confidence            45688999999999998776  5789999853  2110                 02344333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc-e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670          170 PTKDDGGNYRCNACNSIG-E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA  244 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~  244 (540)
                      ++.+|+|.|.|.+.+..+ .  ....+.|.|.....   .+|.+...+....+..|+.++|.|.+.+ +|.+ .|.|+++
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~---~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~  168 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT---TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  168 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC---BCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCC---CCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecC
Confidence            999999999999998643 1  12335677764211   2444433222234567999999999988 4766 9999999


Q ss_pred             CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +..+......... ........+.|.|.....+| |.|+|.+.|....
T Consensus       169 g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          169 SLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             TCCTTEEECCCEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CCcCceEecCcee-cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            8764221111111 11112234579999988888 9999999996543

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.67  E-value=1.9e-16  Score=144.83  Aligned_cols=182  Identities=14%  Similarity=0.220  Sum_probs=107.5

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---eeccC--------------ceEEEEecCCCeEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---VKESS--------------KIKIIVNEQDDTYEII  268 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l~~~~--------------~~~~~~~~~~~~~~~~  268 (540)
                      |.+...+..+.+.+|++++|.|.+.+.+.+.+.|++.  +..   +....              +......  .......
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~   80 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYG--STRKNLR   80 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEEC--C--CCCE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeec--CCCCeEE
Confidence            4455566677888999999999999988889999982  111   10000              1111111  1112236


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCC---CeeeeEEEEEeeccCCCC----------CCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFG---ESNANLNLNIEAEAEPEG----------DPPTFIEKPKIRSEQGGKLVVMECKV  335 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~----------~~p~~~~~~~~~~~~~g~~v~l~C~~  335 (540)
                      |.|.+++.+|+|.|.|.+.+..+   .......|.|........          ..+.+...+....+.+|++++|.|.+
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  160 (259)
T 3omz_A           81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY  160 (259)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred             EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence            99999999999999999998765   233445566654321110          13556666777889999999999999


Q ss_pred             Ecc-CCCeEEEEECCE--Ecc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          336 KAK-PMPEIVWFHEGK--ELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       336 ~~~-p~~~i~W~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      .+. +.+.+.|++.+.  .+.            ...++..  ..+.......|.|.+++.+|+|.|.|.+.+.
T Consensus       161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSV--NFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEE--CCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEE--EEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            875 788999998431  110            0112211  1111111236999999999999999999853

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.67  E-value=4.1e-16  Score=133.40  Aligned_cols=152  Identities=13%  Similarity=0.219  Sum_probs=104.7

Q ss_pred             CCccccCCCeEEEEEEEee-cCCCceEEEeC-CEeec---CC-----------CceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          110 KPTIHQDGDLLVMECVLEA-SPMPDIIWYQG-TKVIE---DT-----------GRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~-~~~~~---~~-----------~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      .++.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+.   ..           .+..+.     ..  ..+|.|.+++.+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~-----~~--~~sL~I~~v~~~   79 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD-----KT--NGALRIYNVSKE   79 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC-----TT--TCCEEECSCCGG
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe-----CC--CccEEEcCCCHH
Confidence            4567889999999999843 34678999994 32221   11           122220     11  127999999999


Q ss_pred             CCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccC
Q psy670          174 DGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESS  252 (540)
Q Consensus       174 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~  252 (540)
                      |+|.|+|.+.+.. .....+.|.|.....    .|.+..        .+..+.|.|.+ .+ |.+.+.|++++..+....
T Consensus        80 D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~----~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~  145 (180)
T 2dru_A           80 DRGDYYMRMLHET-EDQWKITMEVYEMVS----KPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLR  145 (180)
T ss_dssp             GCEEEEEEEESSS-EEEEEEEEEEECCCC----CCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEEES
T ss_pred             HCeEEEEEEEcCC-eEEEEEEEEEECCCC----CCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcCCC
Confidence            9999999998776 566777888875221    333321        23569999999 55 899999999998875111


Q ss_pred             ceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeE
Q psy670          253 KIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANL  297 (540)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  297 (540)
                               .    .+|.+..  .+|+|.|+|.|.|..+......
T Consensus       146 ---------~----~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~  175 (180)
T 2dru_A          146 ---------Q----KTMSYQW--TNLRAPFKCKAVNRVSQESEME  175 (180)
T ss_dssp             ---------S----SEEEEEC--SCCSSCEEEEEEETTEEEEEEE
T ss_pred             ---------C----CEEEEEE--hhcCccEEEEEecCcCccccce
Confidence                     1    1455533  6799999999999987655443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.67  E-value=1e-15  Score=136.24  Aligned_cols=174  Identities=14%  Similarity=0.203  Sum_probs=112.3

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee------c-------------CCCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI------E-------------DTGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~------~-------------~~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      ...+.+|++++|.|.+.+.+  ...+.|||..  ...      .             ...++.+..+.   ....++|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I   85 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDD---SKNTAFLQM   85 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEG---GGTEEEEEE
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecC---CCCEEEEEE
Confidence            35688999999999997643  5689999832  111      0             11344443321   122448999


Q ss_pred             cCCCCCCCeEEEEEEEcCC--ceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCC--CeEEE
Q psy670          168 NNPTKDDGGNYRCNACNSI--GESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPR--PEVKW  241 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v~W  241 (540)
                      .+++.+|+|.|.|.+.+..  ......+.|.|.....   .+|.+. ..+...  .+|+.++|.|.+.+ .|.  +.+.|
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~---~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W  160 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP---TSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW  160 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC---BCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC---CCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence            9999999999999998864  2223344566653211   244443 222222  68999999999988 776  48999


Q ss_pred             EeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          242 FKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       242 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      ++++..+......... .........+.|.|.....+|.|.|+|.|.+..+.
T Consensus       161 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          161 SESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             SCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             EECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            9998766321111111 01112223347999999999999999999998654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=5.4e-16  Score=119.61  Aligned_cols=94  Identities=27%  Similarity=0.528  Sum_probs=82.2

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.|+..+....+.+|+.+.|.|.+.|.|.|.|.|+++|..+..+.++.+..  ++.  ..+|.|.+++.+|+|.|+|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA--DGA--EHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCE--ETT--EEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEee--cCc--eEEEEEecCChhhCEEEEEE
Confidence            37888888888999999999999999999999999999999998877665432  232  23899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|..|....++.|.|..
T Consensus        88 a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           88 ARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEc
Confidence            999999999999999876

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.67  E-value=7.6e-16  Score=139.12  Aligned_cols=172  Identities=16%  Similarity=0.234  Sum_probs=109.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.+.+.|.+.+.|+|+.  ..   +.         ...++.+..     .....+|.|.+++.+|+|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   84 (242)
T 2znx_A           10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFG   84 (242)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-----CCCEEEEEECCCChHHCE
Confidence            356889999999999988888899999942  11   10         122333321     112348999999999999


Q ss_pred             EEEEEEEcCCcee-EEEEEEEEecCcCCC------CCCCeeccCCceeecCCCCeEEEEEEecccC--CCeEEEEeC--C
Q psy670          177 NYRCNACNSIGES-NANIALNFQGGENGA------GFAPSFIEKPRIIPNESGTLIQMKCKCSAKP--RPEVKWFKA--D  245 (540)
Q Consensus       177 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~------~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~  245 (540)
                      .|.|.+.+..+.. ...+.|.|...+...      ..++.....+....+.+|++++|.|.+.+.|  .+.+.|+++  +
T Consensus        85 ~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~  164 (242)
T 2znx_A           85 MYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPG  164 (242)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             EEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCC
Confidence            9999999875432 234566666422100      0011122222334578999999999998865  478999994  2


Q ss_pred             EEee----------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          246 KLVK----------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       246 ~~l~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      ..+.                ...++.+....  ......|.|.+++.+|+|.|+|.+.+.
T Consensus       165 ~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          165 NRLEYMGYVSYSGSTYYNPSLKSRISITRDT--SKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             SCEEEEEEECTTSCEEECGGGTTCEEEEEET--TTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCcEEEEEEecCCccccCccccCcEEEEecC--CCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            2221                01222222211  112347999999999999999999873

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.66  E-value=8.8e-17  Score=144.42  Aligned_cols=175  Identities=14%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             cCCCCeEEEEEEeccc---CCC-eEEEEeCCEEeeccCceE-EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          219 NESGTLIQMKCKCSAK---PRP-EVKWFKADKLVKESSKIK-IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~---p~~-~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      +.+|+.++|.|.+.+.   |.+ .|.|++++..+....... ...........+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6789999999999886   765 899999987654321100 00111112334579999999999999999999987754


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCC-CeEEEEECCEEccCCCceEEEEEecCCe-eE
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YH  370 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (540)
                      .....+..  .. ....+|.+...+.......|+.++|.|.+.| .|. ..|.|+++|..+............++.. ..
T Consensus       109 ~~~~~v~~--~~-~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~  185 (239)
T 1i1c_A          109 PIEKSISK--PE-GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLY  185 (239)
T ss_dssp             CEEEEECC--CS-SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE
T ss_pred             CcEEEEec--CC-CCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEE
Confidence            33222221  00 1122555544332222235789999999998 454 4899999999885422111111222222 23


Q ss_pred             EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          371 IRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       371 ~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +.|.|.....+|.|.|+|.|.|....
T Consensus       186 s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          186 SKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEChhhcCCCCEEEEEEECCCCC
Confidence            45677665556799999999998744

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.66  E-value=9.7e-17  Score=144.16  Aligned_cols=175  Identities=12%  Similarity=0.155  Sum_probs=110.4

Q ss_pred             ccCCCeEEEEEEEeec---CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEAS---PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~---p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+|++++|.|.+.+.   |.+ .|.|+|++..+.............+.....+.|.|.+++.+|+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            6799999999999876   766 899999886654321100011111222344689999999999999999999987753


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y  265 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~  265 (540)
                      .....+...   .....+|.+...+.......|+.+.|.|.+.+ +|. ..|.|+++|..+.......... ..++.  .
T Consensus       109 ~~~~~v~~~---~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~-~~dgt~~~  184 (239)
T 1i1c_A          109 PIEKSISKP---EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTM-DTDGSYFL  184 (239)
T ss_dssp             CEEEEECCC---SSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE-CTTSCEEE
T ss_pred             CcEEEEecC---CCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceE-CCCCCEEE
Confidence            222222210   01113555543333222234889999999998 555 4899999999875432111111 22233  2


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+.|.+.....+|.|.|+|.|.|....
T Consensus       185 ~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          185 YSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            345666665556789999999997643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.1e-15  Score=137.55  Aligned_cols=172  Identities=16%  Similarity=0.256  Sum_probs=110.4

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|.+.+.  +.+.+.|+|++  ....            ...++....     .....+|.|.+++.+|
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK-----SGTSASLAITGLQSED   85 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGG
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc-----cCCEEEEEECCCChhh
Confidence            3578899999999999776  77899999842  1110            122333321     1123489999999999


Q ss_pred             CeEEEEEEEcCCce---eEEEEEEEEecCcCCCC--------------CCCeeccCCceeecCCCCeEEEEEEecccC--
Q psy670          175 GGNYRCNACNSIGE---SNANIALNFQGGENGAG--------------FAPSFIEKPRIIPNESGTLIQMKCKCSAKP--  235 (540)
Q Consensus       175 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--  235 (540)
                      +|.|+|.+.+..+.   ....+.|.|...+....              ..+.+.. +....+.+|++++|.|.+.+.+  
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~  164 (256)
T 3ux9_B           86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFS  164 (256)
T ss_dssp             CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCccc
Confidence            99999999986532   23445666665321100              0112322 2334578999999999998866  


Q ss_pred             CCeEEEEeC--CEEee------c-----------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          236 RPEVKWFKA--DKLVK------E-----------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       236 ~~~v~W~~~--~~~l~------~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      .+.+.|+++  +..+.      .           ..++.+.....  .....|.|.+++.+|+|.|+|.+.+..
T Consensus       165 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          165 SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS--KNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETT--TTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCC--CCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            678999986  32210      0           11333332221  223479999999999999999999863

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=1.8e-15  Score=136.69  Aligned_cols=186  Identities=16%  Similarity=0.232  Sum_probs=115.2

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---ec--------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---IE--------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.  +...+.|+|..  ..   +.              ...++.+....   .....+|.|.+
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~   86 (242)
T 1hxm_B           10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP---ETSTSTLTIHN   86 (242)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET---TTTEEEEEECS
T ss_pred             eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC---CCcEEEEEECC
Confidence            4568899999999999775  56789999842  21   10              12333333211   11235899999


Q ss_pred             CCCCCCeEEEEEEEcCCc-----e--eEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEeccc-CC-CeE
Q psy670          170 PTKDDGGNYRCNACNSIG-----E--SNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSAK-PR-PEV  239 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-----~--~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v  239 (540)
                      ++.+|+|.|.|.+.+...     .  ....+.|.|...+.....+|... ..+....+.+|+.++|.|.+.+. |. +.|
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v  166 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI  166 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence            999999999999987531     1  12345677765322110122221 11333445679999999999885 65 689


Q ss_pred             EEEeCCE-EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          240 KWFKADK-LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       240 ~W~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      .|++++. .+...........+......+.|.|..... + |.|+|.+.|..+.......+.+
T Consensus       167 ~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          167 HWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            9999987 553321111111112223345788877664 4 9999999998877655555544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.66  E-value=4.4e-14  Score=122.28  Aligned_cols=159  Identities=13%  Similarity=0.227  Sum_probs=112.9

Q ss_pred             CceeecCCCCeEEEEEEecc-cC---CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          214 PRIIPNESGTLIQMKCKCSA-KP---RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~-~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      |....+..|+.++|.|.+.+ .|   +..+.|+|++..+.....              .|.+..+...++|.|+|.+.+.
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~--------------tLti~s~t~sdSG~YqCvVTDa   74 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------------TLTVADATSENAGSYKVTVQDT   74 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSS--------------EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcc--------------eEEeeeccccCCeEEEEEEEEC
Confidence            44556778999999999865 66   447999999987654322              6888999999999999999997


Q ss_pred             CCCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEE--Ec-cC-----CCeEEEEECCEEccCCCceEE
Q psy670          290 FGESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKV--KA-KP-----MPEIVWFHEGKELQQTDRISW  360 (540)
Q Consensus       290 ~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~--~~-~p-----~~~i~W~~~~~~~~~~~~~~~  360 (540)
                      .|.......+.|....     .+.+ +..|....+..|..+.|.+.+  .| .|     ...+.|++++..+....    
T Consensus        75 ~Gcs~tSs~VtVT~~a-----~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq----  145 (304)
T 3shs_A           75 DTMTSVESEVFLMEEA-----ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ----  145 (304)
T ss_dssp             TTCCEEECCCEEECBC-----CEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS----
T ss_pred             CCCeeeeeeEEEeccC-----ceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc----
Confidence            7765444344444321     1222 233555566678899999988  43 44     46899999998764322    


Q ss_pred             EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee--EEEEEEEEE
Q psy670          361 NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL--NANLTLNIE  406 (540)
Q Consensus       361 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~  406 (540)
                                 .|++......++|.|+|.+.|..+..  +.++.+.+.
T Consensus       146 -----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~  182 (304)
T 3shs_A          146 -----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA  182 (304)
T ss_dssp             -----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEEC
T ss_pred             -----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEE
Confidence                       57777788889999999999997744  344444443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.66  E-value=1.3e-16  Score=140.32  Aligned_cols=175  Identities=11%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             ccCCCeEEEEEEEeecC----CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEASP----MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+|+++.|.|.+.|.+    ...|.|+|++..+.............+.......|.|.....+|+|.|+|.+.|..+..
T Consensus        15 ~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             eecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            47999999999998875    24999999998775431110011111111222345554444556999999999987754


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDT--Y  265 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~--~  265 (540)
                      .....+.+..   ....+|.+...+.......|..+.|.|.+.+ +|+ +.|.|+++|..+........... .++.  .
T Consensus        95 ~~~~~v~~~~---~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~-~~gt~~~  170 (207)
T 1l6x_A           95 PIEKTISKAK---GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD-SDGSFFL  170 (207)
T ss_dssp             CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEEC-TTSCEEE
T ss_pred             ceEEEeccCC---CCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceEC-CCCCEEE
Confidence            2222332100   0112455433222221224566999999998 454 48999999998753221111111 2222  2


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+.|.+.....+|.|.|+|.|.|....
T Consensus       171 ~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          171 YSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            345667666556799999999997543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=144.00  Aligned_cols=184  Identities=14%  Similarity=0.221  Sum_probs=116.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--CCEEe------------ecc----CceEEEEecCCCeEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLV------------KES----SKIKIIVNEQDDTYEIIC  269 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~l------------~~~----~~~~~~~~~~~~~~~~~l  269 (540)
                      +.+...+..+.+.+|++++|.|.+. .+.+.+.|++  .+...            ...    .++.+...   ......|
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL  102 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP---EGSVSTL  102 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT---TSSSEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec---CCCEEEE
Confidence            4455566778888999999999986 5678899998  22211            000    22222211   1223479


Q ss_pred             EEeCCCCCCcEEEEEEEEcC--CCCeeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEccCCC--eEE
Q psy670          270 EITDPIGPDSGTYRCNVKNE--FGESNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAKPMP--EIV  344 (540)
Q Consensus       270 ~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~--~i~  344 (540)
                      .|.+++.+|+|.|.|.+.+.  .........+.|...... ..+|.+ +..+....+..|+.++|.|.+.+.+++  .+.
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  181 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  181 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCccc-ccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEE
Confidence            99999999999999999974  222334455666542111 113443 333444445569999999999986554  899


Q ss_pred             EEECCEEccCCCceEEEE-----E-ecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCCee
Q psy670          345 WFHEGKELQQTDRISWNV-----T-LKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFHGE  396 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~-----~-~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~  396 (540)
                      |+++|..+..........     . .++.. ..+.|.|.....+| .|.|+|.|.|....
T Consensus       182 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          182 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            999998886532110000     0 11211 22468888877777 99999999997654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.66  E-value=6.9e-16  Score=139.32  Aligned_cols=176  Identities=14%  Similarity=0.225  Sum_probs=112.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--------------CEeec---CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--------------TKVIE---DTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ...+.+|++++|.|.+.+ +.+.+.|+|.              +....   ...++.+...    ....++|.|.+++.+
T Consensus        11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~   85 (240)
T 3q5y_A           11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF----DDYHSEMNMSALELE   85 (240)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC----TTSCEEEEECSCCGG
T ss_pred             eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC----CCCEEEEEECcCChh
Confidence            456889999999999864 7779999982              11111   1134433321    112348999999999


Q ss_pred             CCeEEEEEEEcCC---ceeEEEEEEEEecCcCCCCCCCeec-cCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEE
Q psy670          174 DGGNYRCNACNSI---GESNANIALNFQGGENGAGFAPSFI-EKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKL  247 (540)
Q Consensus       174 d~G~Y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~  247 (540)
                      |+|.|.|.+.+..   ........|.|..... ...+|.+. ..+....+.+|+.++|.|.+.+ .|.+ .+.|+++|..
T Consensus        86 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~  164 (240)
T 3q5y_A           86 DSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR-NVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE  164 (240)
T ss_dssp             GCEEEEEEEESSTTBCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEccCCCcceEEcCCEEEEEecccc-CCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE
Confidence            9999999998321   2223344566653111 01244443 2334444556899999999988 6666 7999999998


Q ss_pred             eeccCceE---EEEecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670          248 VKESSKIK---IIVNEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE  292 (540)
Q Consensus       248 l~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~  292 (540)
                      +.......   ....+......+.|.|.....+| .|.|+|.+.|....
T Consensus       165 l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          165 VHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             ECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            86533211   11111222233468898888888 67999999987544

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.66  E-value=1.7e-15  Score=138.06  Aligned_cols=178  Identities=15%  Similarity=0.243  Sum_probs=113.4

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|+++.  ..+.                 ...++.+....  ......|.|.
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~   90 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK--SSSTVYIQLS   90 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG--GGTEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC--CCCEEEEEEc
Confidence            5567788999999999998866  5789999863  2111                 01222222211  1123479999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy670          273 DPIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFH  347 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~  347 (540)
                      +++.+|+|.|.|.+.+..+.   ......|.|....   ..+|.+...+....+..|+.++|.|.+.+. |.+ .|.|++
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k  167 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK---TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  167 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC---CBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC---CCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence            99999999999999986431   1233456665421   124554432222235679999999999984 766 999999


Q ss_pred             CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ++..+........  ...+. ...+.|.|.....+| |.|+|.|.|.......
T Consensus       168 ~g~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~  217 (261)
T 2xqy_G          168 GSLSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV  217 (261)
T ss_dssp             GTCCTTEEECCCE--EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             CCCcCceEecCce--ecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccE
Confidence            9876532111001  11111 123579999888878 9999999997655443

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.66  E-value=1.8e-16  Score=141.83  Aligned_cols=174  Identities=11%  Similarity=0.172  Sum_probs=106.7

Q ss_pred             ccCCCeEEEEEEEeecC----CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEASP----MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +..|+.++|.|.+.|+.    ...|.|+|+|..+.............+.....+.|.|.....+|+|.|+|.+.+..+..
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            56799999999998864    23799999999885432111111112233344578888877888999999999987643


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCe--E
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDT--Y  265 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~--~  265 (540)
                      .....+....   ....+|.+...+.......|+.+.|.|.+.+ +|.. .+.|+++|..+........... .++.  .
T Consensus       116 ~~~~~i~~~~---~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~-~dgt~~~  191 (240)
T 4acp_A          116 PIEKTISKAK---GQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLD-SDGSFFL  191 (240)
T ss_dssp             CEEEEECCCC---SCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEEC-TTSCEEE
T ss_pred             cccccccccC---CCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceEC-CCCCEEE
Confidence            2222222110   0113555544433332334899999999998 5654 7999999988643221111111 2222  2


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          266 EIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .+.|.+......+.+.|+|.+.+..-
T Consensus       192 ~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          192 YSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEChHHhCCCCEEEEEEEECCC
Confidence            34677766555678999999999753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.66  E-value=1.2e-15  Score=138.31  Aligned_cols=169  Identities=18%  Similarity=0.218  Sum_probs=101.8

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eec---c---------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLL---K---------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK   72 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   72 (540)
                      .+.|.+.|.|.. ....+.+.|||++  ..+   .         ...|+.+.....      ..+|+|.+++.+|+|.|.
T Consensus        20 ~L~C~~~~~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~   92 (247)
T 1svz_A           20 SISCRSSQTIVH-NNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGT------DFTLKISRVEAEDLGIYY   92 (247)
T ss_dssp             EEEEEESSCCBC-TTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred             EEEEeCCCcccc-cCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCC------EEEEEECCCCHHHCEEEE
Confidence            467999888710 0002789999953  211   0         134565543222      368999999999999999


Q ss_pred             EEEEccCcc-eeeeEEEEEeecCCcc-ccCC--CCCCCC-CCCCccccCCCeEEEEEEEeecC--CCceEEEeCC--Eee
Q psy670           73 VIAKNKNGE-GSSTVNLNFSEEDGKL-KVPG--GKAPRF-PKKPTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVI  143 (540)
Q Consensus        73 C~~~~~~~~-~~~~~~l~v~~~~~~~-~i~~--~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~  143 (540)
                      |.+.+..+. ....+.|.|...+... ....  .....+ ......+.+|++++|.|.+.+.+  .+.+.|+|++  ..+
T Consensus        93 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~  172 (247)
T 1svz_A           93 CFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDL  172 (247)
T ss_dssp             EEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCE
T ss_pred             EEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCc
Confidence            999987553 2234567766542100 0000  000000 11234588999999999998774  5689999953  211


Q ss_pred             ------c-----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          144 ------E-----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       144 ------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                            .           ...++.+....   .....+|.|.+++.+|+|.|+|.+.|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          173 KYVGWINTETDEPTFADDFKGRFAFSLDT---STSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEEECTTTCCEEECGGGSSSEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEEEEcCCCccccCccccCcEEEEEec---CCCEEEEEECCCChhHCEEEEEEEecc
Confidence                  0           02333332211   122348999999999999999999985

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.65  E-value=4.3e-16  Score=141.15  Aligned_cols=176  Identities=16%  Similarity=0.253  Sum_probs=112.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe--------------CCEeecCC----CceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ--------------GTKVIEDT----GRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~--------------~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ...+.+|++++|.| ..+.+.+.+.|+|              ++......    .++.+...    ....++|.|.+++.
T Consensus        11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~   85 (245)
T 4ei6_B           11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP----DGSYFTLKIQPTAL   85 (245)
T ss_dssp             EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC----TTSCEEEEECSCCG
T ss_pred             eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec----cCceEEEEECCCCH
Confidence            45688999999999 5577888999998              22211111    34443321    12234899999999


Q ss_pred             CCCeEEEEEEEcCC----ceeEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeCC
Q psy670          173 DDGGNYRCNACNSI----GESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKAD  245 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~  245 (540)
                      +|+|.|.|.+.+..    ........|.|..... ...+|.+ ...+....+.+|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus        86 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g  164 (245)
T 4ei6_B           86 EDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  164 (245)
T ss_dssp             GGCEEEEEEEECSSTTCCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hHCEEEEEEEccCCCcceEEEcCCcEEEEecccC-CCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECC
Confidence            99999999998532    2233445566653111 0113433 23344444556999999999988 5555 89999999


Q ss_pred             EEeeccCceEEEE-------ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670          246 KLVKESSKIKIIV-------NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE  292 (540)
Q Consensus       246 ~~l~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~  292 (540)
                      ..+..........       .+......+.|.|.....+| .|.|+|.+.+....
T Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          165 KEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            9886532211000       01112223468888887777 89999999986543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.65  E-value=2.1e-15  Score=138.47  Aligned_cols=181  Identities=17%  Similarity=0.300  Sum_probs=113.4

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccC-----CCeEEEEeCC--EE---eec---------cCceEEEEecCCCeEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-----RPEVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~  267 (540)
                      .+.+...+..+.+.+|++++|.|.+.+.+     .+.+.|++..  ..   +..         ..++.....  .  ...
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~--~--~~~   90 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS--G--TDF   90 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE--T--TEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC--C--CEE
Confidence            34455567778889999999999998876     4789999853  21   110         122222211  1  124


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccC--CCCCCC--------------eEEeCCceEEeeCCCeEE
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAE--PEGDPP--------------TFIEKPKIRSEQGGKLVV  330 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~--~~~~~p--------------~~~~~~~~~~~~~g~~v~  330 (540)
                      .|.|.+++.+|+|.|.|.+.+..+. ......|.|...+.  ....+|              ..+..+....+.+|+.++
T Consensus        91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~  170 (268)
T 1x9q_A           91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK  170 (268)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence            7999999999999999999987543 22334555554321  000111              123334456788999999


Q ss_pred             EEEEEEccCC--CeEEEEECC--EEcc-------------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          331 MECKVKAKPM--PEIVWFHEG--KELQ-------------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       331 l~C~~~~~p~--~~i~W~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      |.|.+.+.+.  +.+.|++++  ..+.                   ...++...  .+......+|.|.+++.+|+|.|.
T Consensus       171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~  248 (268)
T 1x9q_A          171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTIS--RDDSKSSVYLQMNNLRVEDTGIYY  248 (268)
T ss_dssp             EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEE--EEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEE--EeCCCCEEEEEECCCCHHHCEEEE
Confidence            9999998764  789999852  2110                   11233222  111112347999999999999999


Q ss_pred             EEEEcC
Q psy670          388 CNIKNF  393 (540)
Q Consensus       388 C~a~n~  393 (540)
                      |.|.+.
T Consensus       249 C~a~~~  254 (268)
T 1x9q_A          249 CTGASY  254 (268)
T ss_dssp             EEEEET
T ss_pred             EEEccC
Confidence            999875

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.65  E-value=4.9e-16  Score=140.98  Aligned_cols=175  Identities=16%  Similarity=0.238  Sum_probs=98.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.+  .+.+.|||..  ..+.                 ...++.+..+.   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTLYLQMSS   85 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET---TTTEEEEEEES
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC---CCCEEEEEECC
Confidence            35688999999999998765  5789999843  1110                 11333333221   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCCc----------e---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-C
Q psy670          170 PTKDDGGNYRCNACNSIG----------E---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-P  235 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~----------~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p  235 (540)
                      ++.+|+|.|.|.+.+..+          .   ....+.|.|....   ..+|.+........+..|+.++|.|.+.+. |
T Consensus        86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~---~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P  162 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  162 (257)
T ss_dssp             CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC---CBCCEECCCCC-----------CCCEEEEEBS
T ss_pred             CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC---CcCCcEEEecCcccccCCCcEEEEEEEeeEEC
Confidence            999999999999998754          1   1133467776421   124555433322335679999999999884 7


Q ss_pred             CC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          236 RP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       236 ~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+ .|.|++++..+...........+......+.|.|.++..+| |.|+|.+.|....
T Consensus       163 ~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          163 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             SCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             CCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            76 89999998764211110111111112234568888887777 9999999996544

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.65  E-value=3e-16  Score=140.52  Aligned_cols=176  Identities=9%  Similarity=0.097  Sum_probs=112.9

Q ss_pred             ccccCCCeEEEEEEEeec-CC-C-ceEEEeCCEee-cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          112 TIHQDGDLLVMECVLEAS-PM-P-DIIWYQGTKVI-EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-p~-~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..+.+|+.++|.|.+.|. |. + .+.|+++|..+ ...... ......+.....+.|.|.++..+|+|.|+|.+.+..+
T Consensus        23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~-~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  101 (231)
T 2w59_A           23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMV-LQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL  101 (231)
T ss_dssp             HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCE-EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccccc-ceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence            456799999999999885 64 4 99999998876 332221 1111122223445899999999999999999998775


Q ss_pred             eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceE--EEEe---
Q psy670          188 ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIK--IIVN---  259 (540)
Q Consensus       188 ~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~--~~~~---  259 (540)
                      ....  .+.|..... ...+|.+.. .+....+ .+..++|.|.+.++ | .+.|.|+++|..+.......  ....   
T Consensus       102 ~~~~--~~~v~~~~~-~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  177 (231)
T 2w59_A          102 PLPL--SKSVYRNTG-PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERT  177 (231)
T ss_dssp             SSCE--EEEECCCCS-CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTT
T ss_pred             CCce--EEEEecCCC-CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccc
Confidence            4333  333322100 112444432 2222222 25579999999984 5 37899999999986654111  1111   


Q ss_pred             -----c--CCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          260 -----E--QDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       260 -----~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                           .  ......+.|.|.....+|.|.|+|.|.|....
T Consensus       178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                 1  11223457888888888899999999997654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.65  E-value=1.5e-15  Score=129.90  Aligned_cols=156  Identities=12%  Similarity=0.206  Sum_probs=105.4

Q ss_pred             ceeecCCCCeEEEEEEecc-cCCCeEEEEeC-CEEeec---cCc---------eEEEEecCCCeEEEEEEEeCCCCCCcE
Q psy670          215 RIIPNESGTLIQMKCKCSA-KPRPEVKWFKA-DKLVKE---SSK---------IKIIVNEQDDTYEIICEITDPIGPDSG  280 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~-~~~l~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  280 (540)
                      ..+.+.+|++++|.|.+.. .+.+.|.|++. +..+..   ...         .+......    ...|.|.+++.+|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~----~~sL~I~~v~~~D~G   82 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT----NGALRIYNVSKEDRG   82 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTT----TCCEEECSCCGGGCE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCC----CccEEEcCCCHHHCe
Confidence            3456778999999999854 44678999994 333221   000         01111111    126999999999999


Q ss_pred             EEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceE
Q psy670          281 TYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRIS  359 (540)
Q Consensus       281 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~  359 (540)
                      .|+|.+.+.. .....+.|.|...+    ..|.+..        .+..+.|.|.+ .+ |.+.+.|++++..+..     
T Consensus        83 ~Y~C~v~~~~-~~~~~~~L~V~~~~----~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-----  143 (180)
T 2dru_A           83 DYYMRMLHET-EDQWKITMEVYEMV----SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-----  143 (180)
T ss_dssp             EEEEEEESSS-EEEEEEEEEEECCC----CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----
T ss_pred             EEEEEEEcCC-eEEEEEEEEEECCC----CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----
Confidence            9999998765 45556667776421    1333322        34569999999 55 9999999999988751     


Q ss_pred             EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          360 WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       360 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                          ..+.    +|.+..  .+|+|.|+|.|.|..+.......+
T Consensus       144 ----~~~~----~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          144 ----LRQK----TMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             ----ESSS----EEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             ----CCCC----EEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence                1111    566643  679999999999999887665543

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.65  E-value=2.3e-15  Score=135.87  Aligned_cols=191  Identities=14%  Similarity=0.157  Sum_probs=116.8

Q ss_pred             eccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EE---ee--------------ccCceEEEEecCCCeEEEE
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KL---VK--------------ESSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~---l~--------------~~~~~~~~~~~~~~~~~~~  268 (540)
                      +...+..+.+.+|++++|.|.+.+.  +...+.|++..  ..   +.              ...++.+....  ......
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~   81 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--ETSTST   81 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--TTTEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC--CCcEEE
Confidence            3445667778899999999999875  56789999843  21   11              11222222211  112357


Q ss_pred             EEEeCCCCCCcEEEEEEEEcCCC-C------eeeeEEEEEeeccCCCCCCCeE-EeCCceEEeeCCCeEEEEEEEEcc-C
Q psy670          269 CEITDPIGPDSGTYRCNVKNEFG-E------SNANLNLNIEAEAEPEGDPPTF-IEKPKIRSEQGGKLVVMECKVKAK-P  339 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~~~~~-~------~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~v~l~C~~~~~-p  339 (540)
                      |.|.+++.+|+|.|.|.+.+... .      ......|.|...+.....+|.. +..+....+..|+.++|.|.+.+. |
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence            99999999999999999987531 1      1223566666532100011211 111322335579999999999986 6


Q ss_pred             C-CeEEEEECCE-EccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          340 M-PEIVWFHEGK-ELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       340 ~-~~i~W~~~~~-~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      . +.+.|++++. .+........ ...++. ...+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus       162 ~~~~v~W~~~~~~~l~~~~~~~~-~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          162 DVIKIHWEEKKSNTILGSQEGNT-MKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             CCEEEEEEESSSCCCCCCEECCC-EECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             CCeEEEEEcCCCEeecCccccce-ecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            4 6899999987 5543211000 112222 2234788887665 5 9999999999877654444444

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.65  E-value=1.1e-15  Score=136.17  Aligned_cols=175  Identities=13%  Similarity=0.250  Sum_probs=111.8

Q ss_pred             ceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-------------------ccCceEEEEecCCCeEEEEEEE
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-------------------ESSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-------------------~~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      ....+.+|++++|.|.+.+.+  ...+.|++..  ....                   ...++.+....  ......|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I   85 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDD--SKNTAFLQM   85 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEG--GGTEEEEEE
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecC--CCCEEEEEE
Confidence            345678899999999998743  5789999732  1110                   01222222221  122347999


Q ss_pred             eCCCCCCcEEEEEEEEcCC--CCeeeeEEEEEeeccCCCCCCCeEE-eCCceEEeeCCCeEEEEEEEEc-cCC-C-eEEE
Q psy670          272 TDPIGPDSGTYRCNVKNEF--GESNANLNLNIEAEAEPEGDPPTFI-EKPKIRSEQGGKLVVMECKVKA-KPM-P-EIVW  345 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~~-~p~-~-~i~W  345 (540)
                      .+++.+|+|.|.|.+.+..  ........+.|....   ..+|.+. ..+...  .+|+.++|.|.+.+ .|. + .+.|
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~---~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W  160 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS---PTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTW  160 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC---CBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEE
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCC---CCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEE
Confidence            9999999999999999863  223344556665321   1245554 223222  68999999999998 676 4 8999


Q ss_pred             EECCEEccCCCceEEEE-EecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          346 FHEGKELQQTDRISWNV-TLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       346 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +++|..+....... .. ..++. ...+.|.|.....+|+|.|+|.|.|..+..
T Consensus       161 ~~~g~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          161 SESGQGVTARNFPP-SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             SCCSTTCEEEECCC-EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EECCEECceEEcCc-eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            99987663211000 00 01111 123469999999999999999999987543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.64  E-value=1.4e-15  Score=134.65  Aligned_cols=175  Identities=17%  Similarity=0.320  Sum_probs=108.1

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec----------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE----------------DTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+.  ....                ...++.+....   ....++|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~~v   85 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT---SKSQVFLKMNSL   85 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEET---TTTEEEEEESSC
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeC---CCceEEEEECCC
Confidence            34678999999999997764  4689999852  2110                11233333221   112348999999


Q ss_pred             CCCCCeEEEEEEEcCCce---eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCC
Q psy670          171 TKDDGGNYRCNACNSIGE---SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKAD  245 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~  245 (540)
                      +.+|+|.|.|.+.+..+.   ....+.|.|....   ..+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  162 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ---TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGA  162 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC---CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCC---CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCC
Confidence            999999999999886421   1233566776321   124444432322335679999999999985 877 99999988


Q ss_pred             EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeee
Q psy670          246 KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNA  295 (540)
Q Consensus       246 ~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  295 (540)
                      ..+........ .. . +.+.....+.....++ |.|+|.+.|..+....
T Consensus       163 ~~~~~~~~~~~-~~-~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          163 LSSDVHTFPAV-LQ-S-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             TCCSCCBCCCE-EE-T-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             ccCceEecCcc-cC-C-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            65421111111 11 1 3333222233344356 9999999998776543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.64  E-value=8.6e-16  Score=136.14  Aligned_cols=184  Identities=19%  Similarity=0.282  Sum_probs=128.0

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      ++|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  .+.+....  .  ...|.|.+++.+|.|.|+
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~--~--~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP--S--ASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET--T--EEEEEECCCSGGGCEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC--C--eeEEEEecCChhhCeEEE
Confidence            36666 45666888899999999999999999999999999987653  33332211  1  348999999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc----cCCC--eEEEEECCEEccCCCc
Q psy670          284 CNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA----KPMP--EIVWFHEGKELQQTDR  357 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~----~p~~--~i~W~~~~~~~~~~~~  357 (540)
                      |.+.|..|.....+.+.|...+.    +|....     ....+..+.|.|....    .|..  .+.|.+++.....   
T Consensus        93 C~a~n~~g~~~~~~~l~v~~~P~----~p~~~~-----~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~---  160 (215)
T 3mtr_A           93 CTAVNRIGQESLEFILVQADTPS----SPSIDQ-----VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH---  160 (215)
T ss_dssp             EEEECSSCEEEEEEEEEECCCCC----CCEEEE-----EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE---
T ss_pred             EEEEECCCceEEEEEEEECCCCC----CCcceE-----EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc---
Confidence            99999999888887777765432    232221     1234678899997432    2332  4788877643211   


Q ss_pred             eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          358 ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                       ..............|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus       161 -~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T  209 (215)
T 3mtr_A          161 -SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT  209 (215)
T ss_dssp             -EEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred             -ccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEe
Confidence             1111100000001799999999999999999999999887776666654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.64  E-value=1.7e-15  Score=137.76  Aligned_cols=184  Identities=13%  Similarity=0.165  Sum_probs=115.1

Q ss_pred             ceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E--Eee---------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          215 RIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K--LVK---------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~--~l~---------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      ..+.+.+|++++|.|.+.+.  +...+.|++..  .  ...               ...++.+....  ......|.|.+
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~   85 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDN--AKNTLFLQMSS   85 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEG--GGTEEEEEECS
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC--CCCEEEEEECC
Confidence            34567889999999999763  35679999842  1  110               01222222221  12234699999


Q ss_pred             CCCCCcEEEEEEEEcCC----CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670          274 PIGPDSGTYRCNVKNEF----GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH  347 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~  347 (540)
                      ++.+|+|.|.|.+.+..    ........+.|....   ..+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  162 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK---TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  162 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC---CBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC---CCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEe
Confidence            99999999999998752    222334556665211   12555554333344567999999999998 6766 899999


Q ss_pred             CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          348 EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      ++..+........  ...+. ...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus       163 ~~~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          163 GSLSSGVHTFPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             GTBCTTEEECCCE--EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCeecceEeCCcc--ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            9874321110000  11111 123589999999989 99999999998877666666544

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.64  E-value=5.3e-16  Score=142.61  Aligned_cols=176  Identities=14%  Similarity=0.217  Sum_probs=111.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe--CCEee------------cCC----CceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVI------------EDT----GRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~~------------~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ...+.+|++++|.|.+. .+.+.+.|+|  .+...            ...    .++.+...    .....+|.|.+++.
T Consensus        35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~~  109 (268)
T 3pl6_D           35 NKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP----EGSVSTLKIQRTER  109 (268)
T ss_dssp             EEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT----TSSSEEEEECSCCG
T ss_pred             EEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec----CCCEEEEEECCCCc
Confidence            35688999999999985 6778999999  22211            010    34433321    12234899999999


Q ss_pred             CCCeEEEEEEEcC--CceeEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEecccCC-C-eEEEEeCCEE
Q psy670          173 DDGGNYRCNACNS--IGESNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKCSAKPR-P-EVKWFKADKL  247 (540)
Q Consensus       173 ~d~G~Y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~-~-~v~W~~~~~~  247 (540)
                      +|+|.|+|.+.+.  .........|.|...... ..+|.+ ...+....+.+|+.++|.|.+.+.++ + .+.|+++|..
T Consensus       110 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~  188 (268)
T 3pl6_D          110 GDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  188 (268)
T ss_dssp             GGCEEEEEEEESSSSSCEECCCEEEEEESCGGG-CBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE
T ss_pred             ccCEEEEEEEecCCCceeeCCcEEEEEecCccc-ccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE
Confidence            9999999999974  233334455666542111 113433 22344444556999999999998544 4 8999999988


Q ss_pred             eeccCceEEE-----E--ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCCC
Q psy670          248 VKESSKIKII-----V--NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFGE  292 (540)
Q Consensus       248 l~~~~~~~~~-----~--~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~  292 (540)
                      +.........     .  .+......+.|.|.....+| .|.|+|.+.|....
T Consensus       189 l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          189 VHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            8643211100     0  01112223467888877777 99999999987544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.63  E-value=2.2e-13  Score=117.96  Aligned_cols=236  Identities=17%  Similarity=0.268  Sum_probs=150.5

Q ss_pred             cccCCCeEEEEEEEee-cC---CCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          113 IHQDGDLLVMECVLEA-SP---MPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~-~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .+..|+.++|+|.+.+ .|   ..+++|+|+|..+.....               .|.|..+...|+|.|+|.+.+..|.
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~---------------tLti~s~t~sdSG~YqCvVTDa~Gc   77 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------------TLTVADATSENAGSYKVTVQDTDTM   77 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEEEEETTTC
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcc---------------eEEeeeccccCCeEEEEEEEECCCC
Confidence            4678999999999954 46   337999999988754321               7899999999999999999998776


Q ss_pred             eEEEEEEEEecCcCCCCCCCee-ccCCceeecCCCCeEEEEEEe--cc-cC-----CCeEEEEeCCEEeeccCceEEEEe
Q psy670          189 SNANIALNFQGGENGAGFAPSF-IEKPRIIPNESGTLIQMKCKC--SA-KP-----RPEVKWFKADKLVKESSKIKIIVN  259 (540)
Q Consensus       189 ~~~~~~l~v~~~~~~~~~~p~~-~~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~v~W~~~~~~l~~~~~~~~~~~  259 (540)
                      ......+.|....     .+.+ ...|....+..|..+.|.+.+  .+ .|     ..+++|++++..+....       
T Consensus        78 s~tSs~VtVT~~a-----~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq-------  145 (304)
T 3shs_A           78 TSVESEVFLMEEA-----ELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-------  145 (304)
T ss_dssp             CEEECCCEEECBC-----CEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSS-------
T ss_pred             eeeeeeEEEeccC-----ceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcc-------
Confidence            5444344444211     1122 233555556678889999887  44 44     46899999998775433       


Q ss_pred             cCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc--
Q psy670          260 EQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA--  337 (540)
Q Consensus       260 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~--  337 (540)
                              .|++......++|.|+|.+.+..+....+..+.|....     -+.-........+..|+.+.|.-.+..  
T Consensus       146 --------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (304)
T 3shs_A          146 --------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT-----MNVDQDVVESKTVALGNEISLNYVVSEDI  212 (304)
T ss_dssp             --------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE-----EEEEECCCSEEEEETTSCEEECCEEEEEC
T ss_pred             --------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc-----cccchhheEeehhhcCcEEEEEEEEeecc
Confidence                    46677778889999999999987644333333333211     111111223455778998888777642  


Q ss_pred             --c--CCC----eEEEEE--CCEEccC--CCc-----eEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          338 --K--PMP----EIVWFH--EGKELQQ--TDR-----ISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       338 --~--p~~----~i~W~~--~~~~~~~--~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                        .  ..|    .+.|+.  .|+..+.  ...     .-+.+..++     .|.-......|...|+|.+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 3shs_A          213 VGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG-----HLFKESATYDDTAKFWCVAKLY  280 (304)
T ss_dssp             CSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTS-----CEEESSCCGGGCEEEEEEEEEE
T ss_pred             ccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCc-----ceeecccccccchheeeHHHHH
Confidence              1  233    357874  2321110  000     011223333     4666777888999999998653

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.63  E-value=1.1e-15  Score=138.59  Aligned_cols=181  Identities=12%  Similarity=0.190  Sum_probs=100.4

Q ss_pred             eeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                 ...++.+....  ......|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v   86 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN--SKNTLYLQMSSL   86 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET--TTTEEEEEEESC
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC--CCCEEEEEECCC
Confidence            45678899999999998765  5789999853  1110                 01222222221  112347999999


Q ss_pred             CCCCcEEEEEEEEcCCCC-------------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC
Q psy670          275 IGPDSGTYRCNVKNEFGE-------------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM  340 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~~-------------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~  340 (540)
                      +.+|+|.|.|.+.+..+.             ......|.|....   ..+|.+........+..|+.++|.|.+.+. |.
T Consensus        87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~---~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~  163 (257)
T 3bn9_D           87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  163 (257)
T ss_dssp             CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC---CBCCEECCCCC-----------CCCEEEEEBSS
T ss_pred             ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC---CcCCcEEEecCcccccCCCcEEEEEEEeeEECC
Confidence            999999999999987541             1123456665411   124554433222235679999999999985 77


Q ss_pred             C-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEE
Q psy670          341 P-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTL  403 (540)
Q Consensus       341 ~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  403 (540)
                      + .|.|++++..+..... ......++. ...+.|.|.....+| |.|+|.|.|..........+
T Consensus       164 pi~v~W~k~g~~~~~~~~-~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i  226 (257)
T 3bn9_D          164 PVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV  226 (257)
T ss_dssp             CCEEEETTTTCCSSCEEC-CCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred             CcEEEEeeCCCcCCcEec-CCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence            7 9999999876422100 000111222 223478888888777 99999999976554433333

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.63  E-value=3.1e-15  Score=136.83  Aligned_cols=170  Identities=15%  Similarity=0.195  Sum_probs=102.8

Q ss_pred             ccceeeeCcceeEEeecceeeeeecC--eecc------------cCCceEEEEecCccceeeEEEEEEcccccCCCeeEE
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKG--SLLK------------MSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYK   72 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~--~~l~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   72 (540)
                      .+.|.+.|.|.......+.+.|||+.  ..+.            ...|+.+.....      ..+|+|.+++.+|+|.|.
T Consensus        24 ~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~------~~~L~I~~v~~~DsG~Y~   97 (264)
T 2gjj_A           24 TMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGT------DFTLTIGSVKAEDLAVYY   97 (264)
T ss_dssp             EEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETT------EEEEEESSCCGGGCEEEE
T ss_pred             EEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCC------EEEEEECCCCHHHCEEEE
Confidence            46698888772000002789999963  2211            135666543222      369999999999999999


Q ss_pred             EEEEccCcc-eeeeEEEEEeecCC-------ccccCCC--CCCCC-CCCCccccCCCeEEEEEEEeecCC--CceEEEeC
Q psy670           73 VIAKNKNGE-GSSTVNLNFSEEDG-------KLKVPGG--KAPRF-PKKPTIHQDGDLLVMECVLEASPM--PDIIWYQG  139 (540)
Q Consensus        73 C~~~~~~~~-~~~~~~l~v~~~~~-------~~~i~~~--~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~  139 (540)
                      |.+.+..+. ....+.|.|...+.       .......  ....+ ......+.+|++++|.|.+.+.+.  +.+.|+|+
T Consensus        98 C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A           98 CQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            999987543 22345677765421       0000000  00001 112346889999999999987764  78999996


Q ss_pred             C--Ee---ec----C----------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          140 T--KV---IE----D----------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       140 ~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .  ..   +.    .          ..++.+...   ......+|.|.+++.+|+|.|+|.+.|.
T Consensus       178 ~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          178 NSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD---TSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCCcEEEEEEeccCcccccCcccCCceEEEEc---CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            3  21   11    0          123333221   1112348999999999999999999985

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.63  E-value=3e-15  Score=132.49  Aligned_cols=177  Identities=13%  Similarity=0.228  Sum_probs=109.7

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEe---e-------------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLV---K-------------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l---~-------------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|+++.  ..+   .             ...++.+.....  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~   84 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS--KSQVFLKMNS   84 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT--TTEEEEEESS
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC--CceEEEEECC
Confidence            3445678899999999998764  4789999852  211   0             012333322211  1234799999


Q ss_pred             CCCCCcEEEEEEEEcCCCC---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEEC
Q psy670          274 PIGPDSGTYRCNVKNEFGE---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFHE  348 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~~  348 (540)
                      ++.+|+|.|.|.+.+..+.   ......|.|....   ..+|.+...+....+..|+.++|.|.+.+. |.+ .|.|+++
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  161 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ---TTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSG  161 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSC---CBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecCCC---CCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccC
Confidence            9999999999999986421   2233566665321   124444432212234679999999999986 877 9999998


Q ss_pred             CEEccCCCceEEEEEecCCeeEE--EEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          349 GKELQQTDRISWNVTLKGDKYHI--RLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      |..+.......  ...+ +.+..  .|.  ....+| |.|+|.|.|..+......
T Consensus       162 g~~~~~~~~~~--~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          162 ALSSDVHTFPA--VLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             TTCCSCCBCCC--EEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CccCceEecCc--ccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEE
Confidence            86543211111  1112 33322  344  444456 999999999987655443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=3e-15  Score=139.15  Aligned_cols=173  Identities=15%  Similarity=0.283  Sum_probs=111.4

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                 ...++.+....   .....+|.|.+
T Consensus        31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~  107 (291)
T 2gki_A           31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK---SSSTAYMELSS  107 (291)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG---GGTEEEEEECS
T ss_pred             cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC---CCCEEEEEECc
Confidence            45688999999999998776  5789999952  1110                 01233222211   11234899999


Q ss_pred             CCCCCCeEEEEEEEcCC-c--ee--EEEEEEEEecC---------cCCCCCCCeeccCCceeecCCCCeEEEEEEecccC
Q psy670          170 PTKDDGGNYRCNACNSI-G--ES--NANIALNFQGG---------ENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKP  235 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~-~--~~--~~~~~l~v~~~---------~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p  235 (540)
                      ++.+|+|.|.|.+.+.. +  ..  ...+.|.|...         ......++.+...+....+.+|++++|.|.+.+.+
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999999874 2  11  12345666541         00001133455556677788999999999998877


Q ss_pred             CC------eEEEEeCC--EE---eec---------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          236 RP------EVKWFKAD--KL---VKE---------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       236 ~~------~v~W~~~~--~~---l~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      .+      .+.|+++.  ..   +..         ..++.....    .....|.|.+++.+|+|.|+|.+.+..
T Consensus       188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS----GTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE----TTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec----CCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            65      89999953  21   110         112222111    112479999999999999999999853

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=3.2e-15  Score=138.92  Aligned_cols=176  Identities=18%  Similarity=0.322  Sum_probs=113.2

Q ss_pred             CceeecCCCCeEEEEEEecccC--CCeEEEEeCC--EEe---e--------------ccCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKP--RPEVKWFKAD--KLV---K--------------ESSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~l---~--------------~~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|++++|.|.+.+.+  .+.+.|++..  ..+   .              ...++......  ......|.|.
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~  106 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK--SSSTAYMELS  106 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG--GGTEEEEEEC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC--CCCEEEEEEC
Confidence            4456788999999999998866  5789999953  111   0              01122221111  1113479999


Q ss_pred             CCCCCCcEEEEEEEEcCC-CCe----eeeEEEEEeec---------cCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc
Q psy670          273 DPIGPDSGTYRCNVKNEF-GES----NANLNLNIEAE---------AEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK  338 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~-~~~----~~~~~l~v~~~---------~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~  338 (540)
                      +++.+|+|.|.|.+.+.. +..    .....|.|...         ..+...++.+...+....+.+|++++|.|.+.+.
T Consensus       107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred             cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence            999999999999999864 211    12335555441         0011113445555667788999999999999988


Q ss_pred             CCC------eEEEEECC--EEc---cC---------CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          339 PMP------EIVWFHEG--KEL---QQ---------TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       339 p~~------~i~W~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +.+      .+.|++++  ...   ..         ..++...  ..+.  ..+|.|.+++.+|+|.|+|.|.|...
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~a~~~~~  259 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGT--DFTLTISSVQAEDLAVYYCKQSYYHM  259 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETT--EEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEE--ecCC--EEEEEECCCCHHHCEEEEEEEccCCc
Confidence            765      89999963  211   10         2233222  1222  33899999999999999999998653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.62  E-value=5.7e-14  Score=148.16  Aligned_cols=249  Identities=12%  Similarity=0.190  Sum_probs=160.2

Q ss_pred             CCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCC-CCCCCeEEEEEEEcCCceeEE-EEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNP-TKDDGGNYRCNACNSIGESNA-NIA  194 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~-~~~  194 (540)
                      +.++.|.|.+.|.|.+.+.|.++|..+......              .+.|..+ .....+.|.|.+.+..|.... .+.
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~--------------~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~  156 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA--------------ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK  156 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEE--------------EEEECCCTTSCEEEEEEEEECSSCCEEEECCBE
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeEE--------------EEEEeecCCCceEEEEEEEecCCceEEEEeeEE
Confidence            458999999999999999999998776322111              4556554 233347888877777765422 222


Q ss_pred             EEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecccCCCeEE-EE--eCCEEeeccCceEEEEecCCCeEEEEEEE
Q psy670          195 LNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVK-WF--KADKLVKESSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       195 l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      +....    ...+|.+. .+....+..|+.+.|.|.+.|.|.+.+. |+  ++|..+.....    ...........|.|
T Consensus       157 ~~~~~----~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~----~~~~~~~~~~~l~I  227 (731)
T 2v5y_A          157 VLGHP----CTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI----KVTSSRRFIASFNV  227 (731)
T ss_dssp             EESSC----CSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE----EECCSSEEEEEEEE
T ss_pred             eeecc----cccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccce----EEeccccceEEEEE
Confidence            22221    12366666 4557788899999999999999999887 88  67766543221    11122233468999


Q ss_pred             eCCCCCCcEEEEEEEEcCCCC-eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc----CCC--eEE
Q psy670          272 TDPIGPDSGTYRCNVKNEFGE-SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK----PMP--EIV  344 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~----p~~--~i~  344 (540)
                      .++...|.|.|+|.|.|..|. .+....+.|...+.+.. +|.+      . ......+.|.|.....    +..  .|.
T Consensus       228 ~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~-~p~~------~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~  299 (731)
T 2v5y_A          228 VNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA-PPQL------A-SVGATYLWIQLNANSINGDGPIVAREVE  299 (731)
T ss_dssp             CSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSS-CCEE------E-EECSSCEEEECCCSSBSSCSCCCEEEEE
T ss_pred             cccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCC-Ccce------e-ccCCceEEEEeCCcccCCCCccEEEEEE
Confidence            999999999999999999987 66667788776433211 2222      2 2245678888875321    112  466


Q ss_pred             EEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE--cCCeeeEEEEEEEEE
Q psy670          345 WFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK--NFHGELNANLTLNIE  406 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~V~  406 (540)
                      |...+.      ...........    .+.|.++...+...|+|.|.  |..|....+..+.+.
T Consensus       300 ~~~~~~------~~~~~~~~~~~----~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~  353 (731)
T 2v5y_A          300 YCTASG------SWNDRQPVDST----SYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTR  353 (731)
T ss_dssp             EEESSS------SCEEEEECCSS----EEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEE
T ss_pred             EEECCC------CceEEeccCcc----eEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEee
Confidence            655421      11111111111    78899998888888889999  988876544434443

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.61  E-value=3.8e-15  Score=153.14  Aligned_cols=168  Identities=17%  Similarity=0.220  Sum_probs=118.0

Q ss_pred             ccccCCCeEEEEEEE-eecCCCceEEEeCCEeecC------------CCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          112 TIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIED------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                      ..+.+|++++|.|.+ .+.|.+.+.|+|++..+..            ..+..+.     .+.   +|.|.+++.+|+|.|
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~---~L~i~~v~~~D~G~Y  447 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL-----PNG---SLFLPAVGIQDEGIF  447 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC-----TTS---CEEESSCCGGGCEEE
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc-----CCc---eEEEeccccccCeEE
Confidence            456789999999999 7888899999998653211            1122111     111   799999999999999


Q ss_pred             EEEEEcCCcee-EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCce-E
Q psy670          179 RCNACNSIGES-NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKI-K  255 (540)
Q Consensus       179 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~-~  255 (540)
                      +|.+.+..+.. ...+.|.|...+.    .|.+...... ....+..+.|.|.+.+ +|.+.++|++++..+...... .
T Consensus       448 ~C~~~n~~~~~~~~~~~l~V~~~~~----~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~  522 (581)
T 3o3u_N          448 RCQAMNRNGKETKSNYRVRVYQIPG----KPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVS  522 (581)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEBCCC----CCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEE
T ss_pred             EEEEEcCCCceeEEEEEEEEEcCCC----CCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEE
Confidence            99999988876 7778888876432    4444333332 3333445577999988 699999999999998754322 1


Q ss_pred             E----EE--ecCCCeEEEEEEEeCCC-CCCcEEEEEEEEcCCCC
Q psy670          256 I----IV--NEQDDTYEIICEITDPI-GPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       256 ~----~~--~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~  292 (540)
                      +    ..  ..+.....++|.|.+++ .++.|.|+|.+.|....
T Consensus       523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            1    11  11223445689999988 55588999999998643

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=136.39  Aligned_cols=187  Identities=14%  Similarity=0.281  Sum_probs=115.5

Q ss_pred             CceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EEee----c-------------cCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KLVK----E-------------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~l~----~-------------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +....+.+|++++|.|.+.+.  +.+.+.|++..  ....    .             ..++.+....  ......|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~   84 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ--STRTAYMDLR   84 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET--TTTEEEEEEC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC--CCCEEEEEEC
Confidence            566778899999999999874  56789999742  1100    0             0123222221  1222479999


Q ss_pred             CCCCCCcEEEEEEEEcC---------CCCeeeeEEEEEeeccC--------CCCCCCeEEeCCceEEeeCCCeEEEEEEE
Q psy670          273 DPIGPDSGTYRCNVKNE---------FGESNANLNLNIEAEAE--------PEGDPPTFIEKPKIRSEQGGKLVVMECKV  335 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~---------~~~~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~v~l~C~~  335 (540)
                      +++.+|+|.|.|.+.+.         .........|.|...+.        ....++.+...+. ..+.+|++++|.|.+
T Consensus        85 ~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~  163 (280)
T 3fku_X           85 SLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTG  163 (280)
T ss_dssp             SCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEEC
T ss_pred             CCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEe
Confidence            99999999999999886         11122334455543000        0011334444444 778899999999999


Q ss_pred             Ec-cC-CCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee---
Q psy670          336 KA-KP-MPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE---  396 (540)
Q Consensus       336 ~~-~p-~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---  396 (540)
                      .+ .+ .+.+.|++.  +..+.            ...++...  .++.  ...|.|.+++.+|+|.|.|.+.|..+.   
T Consensus       164 ~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~--~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~  239 (280)
T 3fku_X          164 NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSAS--RSGN--TASLTITGLQPEDEADYYCSTWDSSLSAVV  239 (280)
T ss_dssp             CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEE--EETT--EEEEEECSCCGGGCSEEEEEEEETTTTEEE
T ss_pred             cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEE--ccCC--EEEEEECCCCHHHCEEEEEEEecCCCCceE
Confidence            87 44 378999883  22111            11233322  2222  347999999999999999999987621   


Q ss_pred             eEEEEEEEEEE
Q psy670          397 LNANLTLNIEM  407 (540)
Q Consensus       397 ~~~~~~l~V~~  407 (540)
                      ......|.|..
T Consensus       240 ~g~~t~l~V~~  250 (280)
T 3fku_X          240 FGGGTKLTVLG  250 (280)
T ss_dssp             EBCCCEEEEC-
T ss_pred             ECCCEEEEECC
Confidence            22334566644

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.60  E-value=9.5e-15  Score=129.36  Aligned_cols=173  Identities=20%  Similarity=0.285  Sum_probs=119.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC--ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG--RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ..+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....  ++.+...     .....|.|.++..+|+|.|+|.+.|..|..
T Consensus        28 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  102 (215)
T 3mtr_A           28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT-----PSASYLEVTPDSENDFGNYNCTAVNRIGQE  102 (215)
T ss_dssp             EEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEE-----TTEEEEEECCCSGGGCEEEEEEEECSSCEE
T ss_pred             EEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecC-----CCeeEEEEecCChhhCeEEEEEEEECCCce
Confidence            567899999999999999999999999999987653  3333221     113489999999999999999999999998


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc----cCCC--eEEEEeCCEEeeccCceEEEEecCCC
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA----KPRP--EVKWFKADKLVKESSKIKIIVNEQDD  263 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~  263 (540)
                      ...+.|.|...+.    +|....    . ...+..+.|.|....    .|..  .+.|.+++........  ......  
T Consensus       103 ~~~~~l~v~~~P~----~p~~~~----~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~--~~~~~~--  169 (215)
T 3mtr_A          103 SLEFILVQADTPS----SPSIDQ----V-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW--YDAKEA--  169 (215)
T ss_dssp             EEEEEEEECCCCC----CCEEEE----E-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEE--EEHHHH--
T ss_pred             EEEEEEEECCCCC----CCcceE----E-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccc--cccccc--
Confidence            8888888876332    222211    1 124677899998532    2322  4788887653211100  000000  


Q ss_pred             eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       264 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      .....+.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~  208 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK  208 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence            000268999999999999999999999876555444443

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.60  E-value=7.1e-15  Score=132.32  Aligned_cols=183  Identities=15%  Similarity=0.244  Sum_probs=112.2

Q ss_pred             CccccCCCeEEEEEEEeecCC----CceEEEeCC--Ee---e---c----------------CCCceEEEEeecCcceEE
Q psy670          111 PTIHQDGDLLVMECVLEASPM----PDIIWYQGT--KV---I---E----------------DTGRIKMSKKSIGKDTYL  162 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~~--~~---~---~----------------~~~~~~~~~~~~~~~~~~  162 (540)
                      ...+.+|++++|.|.+.+.+.    ..+.|||..  ..   +   .                ...++.+....   ....
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~   85 (239)
T 3tv3_H            9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT---PKNL   85 (239)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG---GGTE
T ss_pred             CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC---CCCE
Confidence            456889999999999977653    489999832  11   1   1                01233332221   1223


Q ss_pred             EEEEEcCCCCCCCeEEEEEEEcCCc-------------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEE
Q psy670          163 LRLEINNPTKDDGGNYRCNACNSIG-------------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKC  229 (540)
Q Consensus       163 ~~L~i~~~~~~d~G~Y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C  229 (540)
                      ++|.|.+++.+|+|.|.|.+.+..+             .......|.|....   ..+|.+...+....+..|+.+.|.|
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC---CcCCEEEEECCChhhccCCcEEEEE
Confidence            5799999999999999999986531             11223455665311   1255555334444455799999999


Q ss_pred             Eecc-cCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670          230 KCSA-KPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN  300 (540)
Q Consensus       230 ~~~~-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  300 (540)
                      .+.+ +|.+ .+.|++++..+...........+......+.|.|.....+| |.|+|.+.|..+.......+.
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  234 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  234 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEec
Confidence            9988 5544 58999988643221111111111222334578899988888 999999999876554444443

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=138.15  Aligned_cols=150  Identities=15%  Similarity=0.227  Sum_probs=85.2

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc---C-C-------------CceEEEEEecCCeeEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ---Q-T-------------DRISWNVTLKGDKYHIR  372 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~---~-~-------------~~~~~~~~~~~~~~~~~  372 (540)
                      |.+...+....+.+|++++|.|.+.+.+.+.+.|++.  +....   . .             .+....  ........+
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~   80 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDT--YGSTRKNLR   80 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEE--ECC--CCCE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEe--ecCCCCeEE
Confidence            3444456677889999999999999988889999982  11110   0 0             011100  011112237


Q ss_pred             EEEcCCCCCCCeeEEEEEEcCCe---eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceee
Q psy670          373 LEVKDPRKEDTGLYKCNIKNFHG---ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVL  449 (540)
Q Consensus       373 L~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (540)
                      |.|.+++.+|+|.|.|.+.|..+   .......|.|...+......                             .....
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~-----------------------------~~~~~  131 (259)
T 3omz_A           81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA-----------------------------KKDAA  131 (259)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------------------------------
T ss_pred             EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCcccc-----------------------------ccccc
Confidence            99999999999999999999765   33444556665411000000                             00000


Q ss_pred             eeeeeceeecCCcEEEecCCCeEEEEEEEeee-cCCceEEEecC
Q psy670          450 TLSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEPSVTWMKEK  492 (540)
Q Consensus       450 ~~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~~~v~W~~~~  492 (540)
                      .....|.+...+....+.+|++++|.|.+.+. |.+.+.|||++
T Consensus       132 ~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~  175 (259)
T 3omz_A          132 KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRL  175 (259)
T ss_dssp             -----CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEEC
T ss_pred             cccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeC
Confidence            00114567777778889999999999999875 77899999853

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.60  E-value=9.3e-15  Score=134.18  Aligned_cols=172  Identities=16%  Similarity=0.224  Sum_probs=105.8

Q ss_pred             CccccCCCeEEEEEEEeecC-----CCceEEEeCC--Ee---ec---------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP-----MPDIIWYQGT--KV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-----~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|.+.+.+     .+.+.|+|++  ..   +.         ...++....     .....+|.|.+++
T Consensus        24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~   98 (268)
T 1x9q_A           24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG-----SGTDFTLKINRVE   98 (268)
T ss_dssp             EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc-----CCCEEEEEECCCC
Confidence            34678999999999997776     4789999852  21   11         123333321     1123489999999


Q ss_pred             CCCCeEEEEEEEcCCce-eEEEEEEEEecCcCC--CCCCCe--------------eccCCceeecCCCCeEEEEEEeccc
Q psy670          172 KDDGGNYRCNACNSIGE-SNANIALNFQGGENG--AGFAPS--------------FIEKPRIIPNESGTLIQMKCKCSAK  234 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~--~~~~p~--------------~~~~~~~~~~~~g~~~~l~C~~~~~  234 (540)
                      .+|+|.|.|.+.+..+. ....+.|.|...+..  +.++|.              ....+....+.+|++++|.|.+.+.
T Consensus        99 ~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~  178 (268)
T 1x9q_A           99 AEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF  178 (268)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred             hhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCc
Confidence            99999999999987542 223345555542210  001111              1222345678899999999999886


Q ss_pred             CC--CeEEEEeC--CEEee-------------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          235 PR--PEVKWFKA--DKLVK-------------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       235 p~--~~v~W~~~--~~~l~-------------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      +.  +.+.|+++  +..+.                   ...++......  ......|.|.+++.+|+|.|+|.+.+.
T Consensus       179 ~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          179 TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD--SKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC--CCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            53  78999985  22210                   01122222111  111247999999999999999999874

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.59  E-value=4e-15  Score=135.39  Aligned_cols=179  Identities=15%  Similarity=0.233  Sum_probs=109.8

Q ss_pred             CCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---eec--cCce---------EEEEecCCCeEEEEEEEeCCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---VKE--SSKI---------KIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l~~--~~~~---------~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      .+..+.+.+|++++|.|.+.+.+.+.+.|++.  +..   +..  ....         ++.........   |.|.+++.
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~---L~I~~v~~   83 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE---LRLQVANM   83 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC---CEEEEESC
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe---EEEccCCh
Confidence            35567788999999999998888889999982  111   100  0000         11111111111   99999999


Q ss_pred             CCcEEEEEEEEcCCC------CeeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEc-cCCC-eEEEEE
Q psy670          277 PDSGTYRCNVKNEFG------ESNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKA-KPMP-EIVWFH  347 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~-~p~~-~i~W~~  347 (540)
                      +|+|.|.|.+.+..+      .......+.|...... ..+|.+... +....+..|+.++|.|.+.+ .|.+ .+.|++
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTT-CBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCC-CCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            999999999987543      1122345666532111 124444322 22222335789999999998 6666 899999


Q ss_pred             CCEEccCCCceEEEE-E-----ecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCe
Q psy670          348 EGKELQQTDRISWNV-T-----LKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHG  395 (540)
Q Consensus       348 ~~~~~~~~~~~~~~~-~-----~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g  395 (540)
                      +|..+.......... .     .++. ...+.|.|.....+| .|.|+|.|.|...
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            999886532211000 0     1221 123478888877777 7799999999754

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.59  E-value=9.1e-15  Score=131.11  Aligned_cols=183  Identities=15%  Similarity=0.249  Sum_probs=108.6

Q ss_pred             CccccCCCeEEEEEEEeecC--CCce--EEEeCC--E---ee-----cC-----------CCceEEEEeecCcceEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDI--IWYQGT--K---VI-----ED-----------TGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v--~W~~~~--~---~~-----~~-----------~~~~~~~~~~~~~~~~~~~L  165 (540)
                      +..+.+|++++|.|.+.+.+  ...+  .|||..  .   .+     ..           ..++.+....   ....++|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL   85 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDT---SKSQVVL   85 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEET---TTTEEEE
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEecc---CCCEEEE
Confidence            35688999999999997532  3455  999832  1   11     00           1234333221   1223589


Q ss_pred             EEcCCCCCCCeEEEEEEEcCC--------ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-
Q psy670          166 EINNPTKDDGGNYRCNACNSI--------GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-  235 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-  235 (540)
                      .|.+++.+|+|.|.|.+.+..        ........|.|....   ..+|.+...+....+..|+.++|.|.+.+ .| 
T Consensus        86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC---CBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC---CCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            999999999999999998753        112233456665311   12555543333334557999999999987 44 


Q ss_pred             CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670          236 RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN  300 (540)
Q Consensus       236 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  300 (540)
                      ...+.|++++..+...........+......+.|.|......| |.|+|.+.|..+.......+.
T Consensus       163 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~  226 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  226 (232)
T ss_dssp             CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             CeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence            3468899988643211111111111222333578899888888 999999999876655554444

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.59  E-value=2.4e-14  Score=132.15  Aligned_cols=172  Identities=15%  Similarity=0.308  Sum_probs=109.5

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.  +.+.+.|+|..  ....                 ...++.+..+.   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (280)
T 3fku_X            9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ---STRTAYMDLRS   85 (280)
T ss_dssp             CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET---TTTEEEEEECS
T ss_pred             CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC---CCCEEEEEECC
Confidence            4568899999999999765  55789999842  1110                 01233332211   12234899999


Q ss_pred             CCCCCCeEEEEEEEcC---------CceeEEEEEEEEecCcC--------CCCCCCeeccCCceeecCCCCeEEEEEEec
Q psy670          170 PTKDDGGNYRCNACNS---------IGESNANIALNFQGGEN--------GAGFAPSFIEKPRIIPNESGTLIQMKCKCS  232 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~---------~~~~~~~~~l~v~~~~~--------~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  232 (540)
                      ++.+|+|.|.|.+.+.         .........|.|...+.        ....++.+...+. ..+.+|++++|.|.+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECC
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEec
Confidence            9999999999999886         11222344566653000        0011344555555 7888999999999998


Q ss_pred             c-cC-CCeEEEEeC--CEEee------------ccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          233 A-KP-RPEVKWFKA--DKLVK------------ESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       233 ~-~p-~~~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      + .+ .+.+.|++.  +..+.            ...++.....  .  ....|.|.+++.+|+|.|.|.+.+..
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~--~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS--G--NTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE--T--TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc--C--CEEEEEECCCCHHHCEEEEEEEecCC
Confidence            7 44 478999983  22211            0122222211  1  12469999999999999999999865

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.59  E-value=3.3e-15  Score=138.03  Aligned_cols=187  Identities=16%  Similarity=0.260  Sum_probs=117.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEee-----------------ccCceEEEEecCCCeEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVK-----------------ESSKIKIIVNEQDDTYEI  267 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~  267 (540)
                      .+.+...+..+.+.+|++++|.|.+.+.+.+.+.|++++  ....                 ...++.+...   .....
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~  100 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA---SLTLS  100 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC---SSSEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC---CCCEE
Confidence            344555567788889999999999988888899999853  1100                 0122222221   12235


Q ss_pred             EEEEeCCCCCCcEEEEEEEEcCCC----C--eeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEcc-C
Q psy670          268 ICEITDPIGPDSGTYRCNVKNEFG----E--SNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAK-P  339 (540)
Q Consensus       268 ~l~i~~~~~~d~g~y~C~~~~~~~----~--~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-p  339 (540)
                      .|.|.+++.+|+|.|.|.+.+..+    .  ......+.|...... ..+|.+... +....+.+|+.++|.|.+.+. |
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKN-VFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGG-CBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCC-CCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            899999999999999999998421    1  122345666542110 114444322 222234468999999999986 4


Q ss_pred             C-CeEEEEECCEEccCCCceE---EE-E--EecCC-eeEEEEEEcCCCCCC-CeeEEEEEEcCCeee
Q psy670          340 M-PEIVWFHEGKELQQTDRIS---WN-V--TLKGD-KYHIRLEVKDPRKED-TGLYKCNIKNFHGEL  397 (540)
Q Consensus       340 ~-~~i~W~~~~~~~~~~~~~~---~~-~--~~~~~-~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~  397 (540)
                      . +.|.|+++|..+.......   .. .  ..++. ...+.|.|......| .|.|+|.|.|.....
T Consensus       180 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          180 DHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             SCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             CCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            3 6999999999886542110   00 0  01222 223468888877764 678999999976543

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=140.26  Aligned_cols=175  Identities=12%  Similarity=0.127  Sum_probs=113.2

Q ss_pred             ccCCCeEEEEEEEeec---CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          114 HQDGDLLVMECVLEAS---PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~---p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      +.+|++++|.|.+.+.   |. ..|.|+|++..+.............+.....+.|.|..++.+|+|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6789999999999887   33 2699999986653221111111111223344589999999999999999999876643


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceEEEEec-CCCeEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIKIIVNE-QDDTYE  266 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~~~  266 (540)
                      .....+.+..   ....+|.+...+.......|+.++|.|.+.++ | ...|+|+++|..+............ ......
T Consensus       260 ~~~~~v~~~~---~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~  336 (376)
T 2aty_A          260 PIEKTISKTK---GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVY  336 (376)
T ss_pred             ceEEEEcCCC---CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEE
Confidence            2222332210   11236666555554444568999999999984 4 4589999999887443222211111 122334


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      +.|.|.....+|.|.|+|.|.|...
T Consensus       337 s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          337 SKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            5677877777789999999998754

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.58  E-value=8.3e-15  Score=131.91  Aligned_cols=178  Identities=15%  Similarity=0.272  Sum_probs=109.2

Q ss_pred             CCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EE---ee---c---------cCceEEEEecCCCeEEEEEEEeCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KL---VK---E---------SSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~---l~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      .+..+.+.+|+.++|.|.+. .+.+.+.|++.+  ..   +.   .         ..++.+...   ......|.|.+++
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~L~I~~v~   80 (238)
T 1bec_A            5 SPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP---SQEQFSLILELAT   80 (238)
T ss_dssp             ECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC---SSSEEEEEESSCC
T ss_pred             CCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec---CCCEEEEEEecCC
Confidence            45567788999999999985 457789999853  11   10   0         112211110   1223589999999


Q ss_pred             CCCcEEEEEEEEcCCC---C--eeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eEEEEE
Q psy670          276 GPDSGTYRCNVKNEFG---E--SNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EIVWFH  347 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~~---~--~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W~~  347 (540)
                      .+|+|.|.|.+.+..+   .  ......|.|...... ..+|.+.. .+....+..|+.++|.|.+.|. |.+ .+.|++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~-~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  159 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQ-VTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  159 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGG-CBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCC-CCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence            9999999999998642   1  122345666542110 11444433 3333345579999999999985 655 899999


Q ss_pred             CCEEccCCCceE-EEEEecCCee--EEEEEEcCCCCCC-CeeEEEEEEcCCe
Q psy670          348 EGKELQQTDRIS-WNVTLKGDKY--HIRLEVKDPRKED-TGLYKCNIKNFHG  395 (540)
Q Consensus       348 ~~~~~~~~~~~~-~~~~~~~~~~--~~~L~i~~~~~~d-~G~Y~C~a~n~~g  395 (540)
                      +|..+....... ......++.+  .+.|.|......| .|.|+|.|.|...
T Consensus       160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            999886543211 0011122222  2345555444444 6789999999753

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.58  E-value=7.7e-15  Score=132.61  Aligned_cols=183  Identities=15%  Similarity=0.218  Sum_probs=110.2

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeC--CEe---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQG--TKV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~--~~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+.+|++++|.|.+.+.  +...+.|||.  +..   +   .           ...++.+..+.   ....++|.|.+
T Consensus         8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   84 (248)
T 3u2s_H            8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDN---SKDTLYLQMNS   84 (248)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC---CCCEEEEEECC
Confidence            4678899999999999752  3458999983  211   1   0           11344443321   12245899999


Q ss_pred             CCCCCCeEEEEEEEcCC----------------------ceeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEE
Q psy670          170 PTKDDGGNYRCNACNSI----------------------GESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQM  227 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l  227 (540)
                      ++.+|+|.|.|.+.+..                      ........|.|....   ..+|.+...+....+..|+.++|
T Consensus        85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~~L  161 (248)
T 3u2s_H           85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---TKGPSVFPLAPSSKSTSGGTAAL  161 (248)
T ss_dssp             CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC---CBCCEEEEECCC------CEEEE
T ss_pred             CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC---CCCCEEEEeCCCccccCCCcEEE
Confidence            99999999999998642                      111223456665311   12555543333334456999999


Q ss_pred             EEEecc-cC-CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEE
Q psy670          228 KCKCSA-KP-RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLN  300 (540)
Q Consensus       228 ~C~~~~-~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~  300 (540)
                      .|.+.+ +| ...+.|++++..+...........+......+.|.|.....++ |.|+|.+.|..+.......+.
T Consensus       162 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~  235 (248)
T 3u2s_H          162 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE  235 (248)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence            999987 55 4579999988643211111111111222333578888888888 999999999876655444443

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.58  E-value=1.3e-14  Score=149.20  Aligned_cols=168  Identities=18%  Similarity=0.302  Sum_probs=116.4

Q ss_pred             eeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeec------------cCceEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670          216 IIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKE------------SSKIKIIVNEQDDTYEIICEITDPIGPDSGTY  282 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  282 (540)
                      ...+.+|++++|.|.+ .+.|.+.+.|++++..+..            ..+...  . ..    .+|.|.+++.+|+|.|
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~--~-~~----~~L~i~~v~~~D~G~Y  447 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV--L-PN----GSLFLPAVGIQDEGIF  447 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE--C-TT----SCEEESSCCGGGCEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE--c-CC----ceEEEeccccccCeEE
Confidence            3566789999999999 7788999999998653211            111111  1 11    1699999999999999


Q ss_pred             EEEEEcCCCCe-eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCC-CeEEEEEEEEc-cCCCeEEEEECCEEccCCCc-e
Q psy670          283 RCNVKNEFGES-NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGG-KLVVMECKVKA-KPMPEIVWFHEGKELQQTDR-I  358 (540)
Q Consensus       283 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g-~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~  358 (540)
                      +|.+.+..+.. ...+.|.|...+.    .|.+..... . +..+ ..+.|+|.+.+ +|.+.|+|+++|..+..... .
T Consensus       448 ~C~~~n~~~~~~~~~~~l~V~~~~~----~p~i~~~~~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~  521 (581)
T 3o3u_N          448 RCQAMNRNGKETKSNYRVRVYQIPG----KPEIVDSAS-E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGV  521 (581)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEBCCC----CCEEESCCS-E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTE
T ss_pred             EEEEEcCCCceeEEEEEEEEEcCCC----CCEEEcCCc-c-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeE
Confidence            99999988876 6677788766432    344433322 2 4444 44567999998 69999999999999875433 2


Q ss_pred             EE--EEEe--cCCe--eEEEEEEcCCC-CCCCeeEEEEEEcCCee
Q psy670          359 SW--NVTL--KGDK--YHIRLEVKDPR-KEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       359 ~~--~~~~--~~~~--~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~  396 (540)
                      ..  ....  +.+.  ..++|.|..++ ..+.|.|+|.|+|..+.
T Consensus       522 ~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          522 SVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             EEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            22  1111  2222  34589999988 44588999999998643

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.58  E-value=3e-15  Score=134.29  Aligned_cols=183  Identities=12%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             eeecCCCCeEEEEEEeccc--CCCe--EEEEeCC--E---Eee----c------------cCceEEEEecCCCeEEEEEE
Q psy670          216 IIPNESGTLIQMKCKCSAK--PRPE--VKWFKAD--K---LVK----E------------SSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~--p~~~--v~W~~~~--~---~l~----~------------~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ...+.+|++++|.|.+.+.  ....  |.|++..  .   .+.    .            ..++.+....  ......|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~   86 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDT--SKSQVVLT   86 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEET--TTTEEEEE
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEecc--CCCEEEEE
Confidence            3557789999999999753  2234  4999832  1   110    0            0122222221  12235799


Q ss_pred             EeCCCCCCcEEEEEEEEcCC--------CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCC--
Q psy670          271 ITDPIGPDSGTYRCNVKNEF--------GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPM--  340 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~~--------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~--  340 (540)
                      |.+++.+|+|.|.|.+.+..        ........+.|....   ..+|.+...+....+..|+.++|.|.+.+.++  
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~  163 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  163 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC---CBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC---CCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence            99999999999999998753        112233455654311   22555553333334567999999999998543  


Q ss_pred             CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          341 PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       341 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      ..+.|+++|..+........ ...++.. ..+.|.|......| |.|+|.|.|..+.......|.+
T Consensus       164 ~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          164 VTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             CEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             eEEEEEECCEecceeeccce-eCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            36889998864321111001 1112221 23478999888888 9999999999877766666654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=138.02  Aligned_cols=178  Identities=15%  Similarity=0.241  Sum_probs=112.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Eeec-----------------CCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KVIE-----------------DTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|.+.+.+.+.+.|+|++  ....                 ...++.+...    .....+|.|.+++
T Consensus        33 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~  108 (279)
T 2wbj_D           33 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA----SLTLSTLTVTSAH  108 (279)
T ss_dssp             EEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC----SSSEEEEEESSCC
T ss_pred             eEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC----CCCEEEEEEccCC
Confidence            456889999999999987788899999953  1100                 0123333321    1234589999999


Q ss_pred             CCCCeEEEEEEEcCCc------eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-CC-CeEEEE
Q psy670          172 KDDGGNYRCNACNSIG------ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-PR-PEVKWF  242 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~  242 (540)
                      .+|+|.|+|.+.+..+      .....+.|.|..... ...+|.+.. .+....+.+|+.+.|.|.+.+. |. +.|.|+
T Consensus       109 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  187 (279)
T 2wbj_D          109 PEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  187 (279)
T ss_dssp             GGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG-GCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEE
T ss_pred             ccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC-CCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEE
Confidence            9999999999998321      112234566654211 012444432 2223334468999999999985 54 689999


Q ss_pred             eCCEEeeccCceE--EEE---ecCCC--eEEEEEEEeCCCCC-CcEEEEEEEEcCCCCe
Q psy670          243 KADKLVKESSKIK--IIV---NEQDD--TYEIICEITDPIGP-DSGTYRCNVKNEFGES  293 (540)
Q Consensus       243 ~~~~~l~~~~~~~--~~~---~~~~~--~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~  293 (540)
                      +++..+.......  ...   ....+  ...+.|.|...... +.|.|+|.+.|.....
T Consensus       188 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          188 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             ETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             ECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence            9999876432110  000   01222  23346888777765 4679999999975543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.57  E-value=5.1e-15  Score=133.29  Aligned_cols=185  Identities=13%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             ceeecCCCCeEEEEEEecccC----CCeEEEEeCC--E---Ee---e------c----------cCceEEEEecCCCeEE
Q psy670          215 RIIPNESGTLIQMKCKCSAKP----RPEVKWFKAD--K---LV---K------E----------SSKIKIIVNEQDDTYE  266 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~--~---~l---~------~----------~~~~~~~~~~~~~~~~  266 (540)
                      ..+.+.+|++++|.|.+.+.+    ...+.|++..  .   .+   .      .          ..++.+....  ....
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~   85 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT--PKNL   85 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG--GGTE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC--CCCE
Confidence            345678899999999998755    3489999832  1   11   0      0          1122222211  1223


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCC-------------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEE
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFG-------------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMEC  333 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C  333 (540)
                      ..|.|.+++.+|+|.|.|.+.+..+             .......+.|....   ..+|.+...+....+..|+.++|.|
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCCCC--TTEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC---CcCCEEEEECCChhhccCCcEEEEE
Confidence            5799999999999999999986532             11222345554211   2255555333333455799999999


Q ss_pred             EEEc-cCCC-eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          334 KVKA-KPMP-EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       334 ~~~~-~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .+.+ .|.+ .+.|++++..+........ ...++. ...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  236 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  236 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence            9998 4544 5899998864422111011 111222 223478899888888 99999999998776666655543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=5.7e-14  Score=107.12  Aligned_cols=95  Identities=23%  Similarity=0.428  Sum_probs=80.7

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.......++   ..+|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEE
Confidence            367777778888899999999999999999999999999999987766554333333   23799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|..|....++.|.|..
T Consensus        81 a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           81 AINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCcEEEEEEEEEec
Confidence            999999999888888864

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.57  E-value=1.4e-14  Score=110.30  Aligned_cols=97  Identities=26%  Similarity=0.511  Sum_probs=79.5

Q ss_pred             CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       205 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......+.......  ..+|.|.+++.+|+|.|+|
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C   80 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD--LTTLIIMDVQKQDGGLYTL   80 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSS--EEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccc--eEEEEEcCCCccCCEEEEE
Confidence            35788888888899999999999999999999999999999998765433222222222  2479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEee
Q psy670          285 NVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~  303 (540)
                      .|.|..|....++.|.|..
T Consensus        81 ~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           81 SLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCCEEEEEEEEEEEE
Confidence            9999999888888888753

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.57  E-value=2.3e-14  Score=138.07  Aligned_cols=174  Identities=11%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             cCCCCeEEEEEEeccc---CC-CeEEEEeCCEEeeccCce-EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          219 NESGTLIQMKCKCSAK---PR-PEVKWFKADKLVKESSKI-KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~---p~-~~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      +..|+.++|.|.+.++   |. ..|.|++++..+...... ............+.|.|..++.+|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6689999999999886   32 369999998665322111 001111222334579999999999999999999876643


Q ss_pred             eeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEEecCC-eeE
Q psy670          294 NANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYH  370 (540)
Q Consensus       294 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~  370 (540)
                      .....+.+..   ....+|.+...+.......|+.++|.|.+.|. | ...|.|+++|..+............++. ...
T Consensus       260 ~~~~~v~~~~---~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~  336 (376)
T 2aty_A          260 PIEKTISKTK---GRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVY  336 (376)
T ss_pred             ceEEEEcCCC---CCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEE
Confidence            3322332210   01225666555544444568899999999985 3 4589999999987543222211122332 224


Q ss_pred             EEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          371 IRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       371 ~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +.|.|.....+|.|.|+|.|.|...
T Consensus       337 s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          337 SKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            4788888778889999999999764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=1.6e-14  Score=129.97  Aligned_cols=175  Identities=15%  Similarity=0.226  Sum_probs=107.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---ec------------CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---IE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ...+.+|++++|.|.+ ..+.+.+.|+|++  ..   +.            ...++.+...    .....+|.|.+++.+
T Consensus         8 ~v~v~~G~~v~L~C~~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~----~~~~~~L~I~~v~~~   82 (238)
T 1bec_A            8 NKVAVTGGKVTLSCQQ-TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP----SQEQFSLILELATPS   82 (238)
T ss_dssp             EEEEETTCCEEEEEEE-SSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC----SSSEEEEEESSCCGG
T ss_pred             eeEEeCCCcEEEEEEe-CCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec----CCCEEEEEEecCCcc
Confidence            4568899999999998 4467799999853  11   10            0123322211    122458999999999


Q ss_pred             CCeEEEEEEEcCCc-----eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEeccc-CCC-eEEEEeCC
Q psy670          174 DGGNYRCNACNSIG-----ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSAK-PRP-EVKWFKAD  245 (540)
Q Consensus       174 d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~  245 (540)
                      |+|.|.|.+.+..+     .......|.|..... ...+|.+.. .+....+.+|+.++|.|.+.+. |.+ .+.|+++|
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  161 (238)
T 1bec_A           83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR-QVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG  161 (238)
T ss_dssp             GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG-GCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETT
T ss_pred             cCEEEEEEEecCCCCccccccCCCEEEEEeccCC-CCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECC
Confidence            99999999998631     112234566654211 012444432 3334455679999999999984 655 89999999


Q ss_pred             EEeeccCceE-EEEecCCCeE--EEEEEEeCCCCCC-cEEEEEEEEcCCC
Q psy670          246 KLVKESSKIK-IIVNEQDDTY--EIICEITDPIGPD-SGTYRCNVKNEFG  291 (540)
Q Consensus       246 ~~l~~~~~~~-~~~~~~~~~~--~~~l~i~~~~~~d-~g~y~C~~~~~~~  291 (540)
                      ..+....... .......+.+  .+.|.|......| .|.|+|.+.|...
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            9886543211 0011112222  2344554433333 6799999999743

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=1.8e-14  Score=128.90  Aligned_cols=177  Identities=14%  Similarity=0.156  Sum_probs=107.8

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e-c------------CCCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I-E------------DTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~-~------------~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ...+.+|++++|.|.+.+.  +...+.|||..  ..   + .            ...++.+...   .....++|.|.++
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v   86 (230)
T 1ypz_F           10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN---PSASTSILTIYSL   86 (230)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC---CTTTEEEEEECSC
T ss_pred             EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEc---CCCCEEEEEECcC
Confidence            4568899999999999764  56789999842  11   1 0            1123332221   1113358999999


Q ss_pred             CCCCCeEEEEEEEcC--Cc--eeEEEEEEEEecCcCC----CCCCCeeccCCceeecCCCCeEEEEEEeccc-CC-CeEE
Q psy670          171 TKDDGGNYRCNACNS--IG--ESNANIALNFQGGENG----AGFAPSFIEKPRIIPNESGTLIQMKCKCSAK-PR-PEVK  240 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~--~~--~~~~~~~l~v~~~~~~----~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~  240 (540)
                      +.+|+|.|.|.+.+.  ..  .....+.|.|......    ....+.+.. +....+..|+.++|.|.+.++ |. +.|.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~  165 (230)
T 1ypz_F           87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVY  165 (230)
T ss_dssp             CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEE
T ss_pred             ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEE
Confidence            999999999999874  11  1123346667521100    001222222 333345568899999999884 75 5899


Q ss_pred             EEe-CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          241 WFK-ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       241 W~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      |++ +|..+...........+......+.|.|..... + |.|+|.+.|.....
T Consensus       166 W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          166 WKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             EECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             EEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            999 777664322111111112222345788887765 4 89999999976643

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.56  E-value=3.6e-15  Score=135.64  Aligned_cols=174  Identities=16%  Similarity=0.236  Sum_probs=107.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c-CCC-----------ceEEEEeecCcceEEEEEEEcCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E-DTG-----------RIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~-~~~-----------~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ...+.+|++++|.|.+.+.+.+.+.|||.  +..   + . ...           ++.+...  .. .  . |.|.+++.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~-~--~-L~I~~v~~   83 (253)
T 3to4_D           10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TD-T--E-LRLQVANM   83 (253)
T ss_dssp             EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECC--SS-S--C-CEEEEESC
T ss_pred             eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeC--CC-C--e-EEEccCCh
Confidence            45688999999999988888889999982  111   1 0 000           2211111  00 0  1 99999999


Q ss_pred             CCCeEEEEEEEcCCc------eeEEEEEEEEecCcCCCCCCCeecc-CCceeecCCCCeEEEEEEecc-cCCC-eEEEEe
Q psy670          173 DDGGNYRCNACNSIG------ESNANIALNFQGGENGAGFAPSFIE-KPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFK  243 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~  243 (540)
                      +|+|.|+|.+.+..+      .......|.|..... ...+|.+.. .+....+..|+.++|.|.+.+ +|.+ .+.|++
T Consensus        84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  162 (253)
T 3to4_D           84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV  162 (253)
T ss_dssp             SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST-TCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCC-CCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence            999999999986543      122334566653211 112444432 222223335789999999998 6766 899999


Q ss_pred             CCEEeeccCceEEEE-------ecCCCeEEEEEEEeCCCCCC-cEEEEEEEEcCCC
Q psy670          244 ADKLVKESSKIKIIV-------NEQDDTYEIICEITDPIGPD-SGTYRCNVKNEFG  291 (540)
Q Consensus       244 ~~~~l~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~  291 (540)
                      +|..+..........       .+......+.|.|.....+| .|.|+|.+.+...
T Consensus       163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l  218 (253)
T 3to4_D          163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (253)
T ss_dssp             TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence            999886532211000       11112223478888777777 7799999998643

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=1.2e-14  Score=129.99  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=111.0

Q ss_pred             ccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeCC--EE---ee-------------ccCceEEEEecCCCeEEEEEE
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--KL---VK-------------ESSKIKIIVNEQDDTYEIICE  270 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~~---l~-------------~~~~~~~~~~~~~~~~~~~l~  270 (540)
                      ...+..+.+.+|++++|.|.+.+.  +...+.|++..  ..   +.             ...++.+..  ........|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~L~   82 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASK--NPSASTSILT   82 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEE--CCTTTEEEEE
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEE--cCCCCEEEEE
Confidence            344667778899999999999774  56789999842  11   10             012222221  1222345899


Q ss_pred             EeCCCCCCcEEEEEEEEcC--CC--CeeeeEEEEEeeccCC----CCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-
Q psy670          271 ITDPIGPDSGTYRCNVKNE--FG--ESNANLNLNIEAEAEP----EGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-  340 (540)
Q Consensus       271 i~~~~~~d~g~y~C~~~~~--~~--~~~~~~~l~v~~~~~~----~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-  340 (540)
                      |.+++.+|+|.|.|.+.+.  ..  .......|.|......    ....+.+.. +....+..|+.++|.|.+.+. |. 
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~  161 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDV  161 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred             ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCC
Confidence            9999999999999999874  11  1123346666521100    001222322 333334568899999999986 75 


Q ss_pred             CeEEEEE-CCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          341 PEIVWFH-EGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       341 ~~i~W~~-~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +.|.|++ +|..+......... ..++. ...+.|.|..... + |.|+|.|.|..+..
T Consensus       162 ~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~  217 (230)
T 1ypz_F          162 IRVYWKEKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG  217 (230)
T ss_dssp             CEEEEECTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred             eEEEEEccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence            5999999 77766432211111 12222 1235788887765 4 99999999987643

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.55  E-value=6.9e-14  Score=125.11  Aligned_cols=182  Identities=13%  Similarity=0.231  Sum_probs=112.8

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.  +...+.|||..  ..   +   .           ...++.+....   .....+|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDT---STSTVYMELSS   85 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC---CCCEEEEEECC
Confidence            3568899999999999653  34579999832  11   1   0           11344433322   12234799999


Q ss_pred             CCCCCCeEEEEEEEcCC-----c-e--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCeE
Q psy670          170 PTKDDGGNYRCNACNSI-----G-E--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPEV  239 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~-----~-~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v  239 (540)
                      ++.+|+|.|.|.+.+..     + .  ......|.|.....   .+|.+...+....+..|+.++|.|.+.+ +| ...+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v  162 (230)
T 3n9g_H           86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  162 (230)
T ss_dssp             CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC---BCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCC---CCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEE
Confidence            99999999999998754     1 1  12334566653221   2455543333334568999999999988 45 4569


Q ss_pred             EEEeCCEEeeccCceE--EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          240 KWFKADKLVKESSKIK--IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       240 ~W~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      .|  ++..+.......  ....+......+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus       163 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          163 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            99  554443211110  11111222333579999999999 9999999998766555554444

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.54  E-value=1.5e-14  Score=130.72  Aligned_cols=186  Identities=13%  Similarity=0.195  Sum_probs=110.9

Q ss_pred             CceeecCCCCeEEEEEEecc--cCCCeEEEEeCC--EE---e---e-c----------cCceEEEEecCCCeEEEEEEEe
Q psy670          214 PRIIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--KL---V---K-E----------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~---l---~-~----------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      +..+.+.+|++++|.|.+.+  .+...+.|++..  ..   +   . .          ..++......  ......|.|.
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~   83 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDN--SKDTLYLQMN   83 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEG--GGTEEEEEEC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC--CCCEEEEEEC
Confidence            34566789999999999975  345679999832  11   1   0 0          1222222221  1223579999


Q ss_pred             CCCCCCcEEEEEEEEcCC----------------------CCeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEE
Q psy670          273 DPIGPDSGTYRCNVKNEF----------------------GESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVV  330 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~~~----------------------~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  330 (540)
                      +++.+|+|.|.|.+.+..                      ........+.|....   ..+|.+...+....+..|+.++
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~~  160 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---TKGPSVFPLAPSSKSTSGGTAA  160 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC---CBCCEEEEECCC------CEEE
T ss_pred             CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC---CCCCEEEEeCCCccccCCCcEE
Confidence            999999999999998641                      111223455554211   1255555333333455799999


Q ss_pred             EEEEEEc-cC-CCeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          331 MECKVKA-KP-MPEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       331 l~C~~~~-~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      |.|.+.+ .| ...+.|+++|..+........ ...++. ...+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       161 L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          161 LGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             EEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred             EEEEEeeEECCCeEEEEeECCccCceeecCce-ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence            9999998 45 457999998864321111001 111222 223478888888888 99999999988776666666554

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.54  E-value=5.7e-14  Score=125.66  Aligned_cols=183  Identities=13%  Similarity=0.208  Sum_probs=113.5

Q ss_pred             eeecCCCCeEEEEEEecc--cCCCeEEEEeCC--E---Eee--------------ccCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--K---LVK--------------ESSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~---~l~--------------~~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      .+.+.+|++++|.|.+.+  .....+.|++..  .   .+.              ...++.+....  ......|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v   86 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDT--STSTVYMELSSL   86 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEET--TTTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecC--CCCEEEEEECCC
Confidence            466789999999999975  334679999732  1   110              01233332222  223357999999


Q ss_pred             CCCCcEEEEEEEEcCCC-----C---eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeEE
Q psy670          275 IGPDSGTYRCNVKNEFG-----E---SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEIV  344 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i~  344 (540)
                      +.+|+|.|.|.+.+..+     .   ......+.|...+   ..+|.+...+....+..|+.++|.|.+.+. | .+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  163 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  163 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC---CBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEE
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC---CCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEE
Confidence            99999999999987531     1   1233455654321   125555533333335689999999999984 4 34689


Q ss_pred             EEECCEEccCCCceEE-EEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          345 WFHEGKELQQTDRISW-NVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       345 W~~~~~~~~~~~~~~~-~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      |  ++..+........ ....++.. ..+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus       164 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          164 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            9  5554432111000 01112221 23479999999999 99999999998777666666554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.54  E-value=1.9e-14  Score=110.82  Aligned_cols=94  Identities=26%  Similarity=0.443  Sum_probs=80.8

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.+.|.|+++|..+....++.+....    ....|.|.+++.+|+|.|+|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG----AEHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET----TEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecC----ceEEEEEecCChhhCEEEEEE
Confidence            3778888888889999999999999999999999999999999887766554332    124799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEee
Q psy670          286 VKNEFGESNANLNLNIEA  303 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~  303 (540)
                      |.|..|....++.|.|..
T Consensus        88 a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           88 ARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEc
Confidence            999999888888888765

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.53  E-value=1e-15  Score=135.32  Aligned_cols=180  Identities=12%  Similarity=0.128  Sum_probs=109.7

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeeccCceEEE-EecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKESSKIKII-VNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      ...|....+.+|+.++|.|.+.++++   +.|.|  ++..+......... ...........|.|.+++.+|+|.|+|.+
T Consensus         8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~   85 (214)
T 1ow0_A            8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA   85 (214)
T ss_dssp             EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred             EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence            34466666778999999999998654   68999  44333211000000 00111224457888888888999999999


Q ss_pred             EcCCCCeeeeEEEEEeeccCCCCCCCeEEeC-CceEEeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEE--E
Q psy670          287 KNEFGESNANLNLNIEAEAEPEGDPPTFIEK-PKIRSEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISW--N  361 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~--~  361 (540)
                      .+..+.......+.+.    ....+|.+... +....+..|+.++|.|.+.|. |. +.|.|+++|..+........  .
T Consensus        86 ~~~~~~~~~~~~i~~~----~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  161 (214)
T 1ow0_A           86 AYPESKTPLTATLSKS----GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR  161 (214)
T ss_dssp             CCSSCSSCEEEEEECC----SSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred             ecCCCCCceeEeeccC----CCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence            9876643333333210    11225555332 222235678999999999985 54 49999999998866521111  1


Q ss_pred             EE---ecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          362 VT---LKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       362 ~~---~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..   .++. ...+.|.+......+.|.|+|.|.|....
T Consensus       162 ~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          162 QEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             ECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred             ccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence            11   2222 22345666655555689999999997643

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.51  E-value=3.3e-14  Score=129.13  Aligned_cols=184  Identities=13%  Similarity=0.241  Sum_probs=112.8

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E--E-ee------------ccCceEEEEecCCCeEEEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K--L-VK------------ESSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~--~-l~------------~~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      .+...+..+.+.+|++++|.|.+. .+.+.+.|++..  .  . +.            ...++.....   ......|.|
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~L~I   80 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE---KKESFPLTV   80 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS---STTBCCEEE
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec---CCCEEEEEE
Confidence            345556778888999999999985 457789999853  1  1 10            0112222111   011237999


Q ss_pred             eCCCCCCcEEEEEEEEcCC---CCeeeeEEEEEeeccCCCCCCCeEEe-CCceEEeeCCCeEEEEEEEEcc-CCC-eEEE
Q psy670          272 TDPIGPDSGTYRCNVKNEF---GESNANLNLNIEAEAEPEGDPPTFIE-KPKIRSEQGGKLVVMECKVKAK-PMP-EIVW  345 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~~-p~~-~i~W  345 (540)
                      .+++.+|+|.|.|.+.+..   ........+.|..... ...+|.+.. .+....+..|+.++|.|.+.+. |.+ .|.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  159 (252)
T 1oga_E           81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLK-NVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  159 (252)
T ss_dssp             CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGG-GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccC-CCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEE
Confidence            9999999999999999862   1112234466653110 012455443 2333334468999999999985 654 8999


Q ss_pred             EECCEEccCCCceEEE----E--EecCC-eeEEEEEEcCCCCC-CCeeEEEEEEcCCeee
Q psy670          346 FHEGKELQQTDRISWN----V--TLKGD-KYHIRLEVKDPRKE-DTGLYKCNIKNFHGEL  397 (540)
Q Consensus       346 ~~~~~~~~~~~~~~~~----~--~~~~~-~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~  397 (540)
                      +++|..+.........    .  ..++. ...+.|.|...... |.|.|+|.|.|.....
T Consensus       160 ~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          160 WVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             EETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            9999987653221000    0  01122 22346888766554 5788999999986543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.51  E-value=2.7e-13  Score=104.21  Aligned_cols=93  Identities=26%  Similarity=0.494  Sum_probs=79.8

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++...  ..+.  ..+|.|.++..+|+|.|+|.|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~--~~~~--~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT--NTSG--VLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEE--EETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEE--ECCC--EEEEEEcCCCcccCEEEEEEE
Confidence            667777778888999999999999999999999999999999877765443  2222  237999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        84 ~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           84 TNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEEEEEC
Confidence            99999999999998875

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.50  E-value=3.1e-13  Score=103.01  Aligned_cols=93  Identities=22%  Similarity=0.461  Sum_probs=79.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++....  ++.  ..+|.|.++..+|+|.|+|.|
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~--~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE--DKG--GFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE--ETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE--eCC--EEEEEECCCCcccCEEEEEEE
Confidence            6677777888889999999999999999999999999999998777665432  222  237999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEeEEEEEEEEe
Confidence            99999999888888863

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=1.7e-13  Score=107.46  Aligned_cols=94  Identities=20%  Similarity=0.317  Sum_probs=80.5

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+..  ...  ...|.|.+++.+|+|.|+|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~--~~~--~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--SEN--GSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE--CSS--EEEEEETTCCTTTCEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE--cCC--EEEEEECCCChhcCEEEEEE
Confidence            37777777888899999999999999999999999999999988776655442  221  33899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|..|.....+.|.|..
T Consensus        82 a~N~~g~~~~~~~l~V~~   99 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTVVD   99 (114)
T ss_dssp             EECSSCEEECCEEEEEEC
T ss_pred             EEECCCcEEEEEEEEEEC
Confidence            999999998899998876

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.50  E-value=1.1e-13  Score=125.63  Aligned_cols=167  Identities=14%  Similarity=0.265  Sum_probs=103.8

Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--E--E-cc------------CCCceEEEEEecCCeeEEEEEEc
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--K--E-LQ------------QTDRISWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~--~-~~------------~~~~~~~~~~~~~~~~~~~L~i~  376 (540)
                      +...+....+.+|++++|.|.+. .+.+.+.|++..  .  . +.            ...++..  ..+. .....|.|.
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~--~~~~-~~~~~L~I~   81 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV--SREK-KESFPLTVT   81 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEE--CCSS-TTBCCEEEC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEE--EecC-CCEEEEEEC
Confidence            44456677899999999999985 457899999853  1  1 10            0122222  1110 112379999


Q ss_pred             CCCCCCCeeEEEEEEcCC---eeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeee
Q psy670          377 DPRKEDTGLYKCNIKNFH---GELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSV  453 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (540)
                      +++.+|+|.|.|.+.+..   ........|.|...                                        +....
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------~~~~~  121 (252)
T 1oga_E           82 SAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTED----------------------------------------LKNVF  121 (252)
T ss_dssp             SCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESC----------------------------------------GGGCB
T ss_pred             cCChhhCEEEEEEEecCCccceeECCCEEEEEecc----------------------------------------cCCCC
Confidence            999999999999999862   11122234555430                                        00012


Q ss_pred             eceeec-CCcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCCC----------------CeEE----EEEEec--
Q psy670          454 VPVIRE-VPKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKED----------------NKHV----VHIEQV--  508 (540)
Q Consensus       454 ~p~i~~-~~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~----------------~~~~----~~~~~~--  508 (540)
                      +|.+.. .+....+.+|+.++|.|.+.|. |++ +++|+|+|..+..+                ..+.    +.+...  
T Consensus       122 ~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~  201 (252)
T 1oga_E          122 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW  201 (252)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh
Confidence            555543 2333334568999999999986 654 99999999877532                1222    233333  


Q ss_pred             --CCeEEEEEEeeeeeee
Q psy670          509 --KDVSMNFELWLGIVEK  524 (540)
Q Consensus       509 --~~g~y~c~~~~~~~~~  524 (540)
                        +.|.|+|.+....+.+
T Consensus       202 ~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          202 QNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             TCTTCEEEEEEEECCBCT
T ss_pred             ccCCCEEEEEEEcCCCCC
Confidence              4678999998765544

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.50  E-value=1.9e-13  Score=121.73  Aligned_cols=175  Identities=17%  Similarity=0.228  Sum_probs=107.6

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e---c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I---E-----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+.  +...+.|||..  ..   +   .           ...|+.+....   ....++|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~   85 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDK---SISTAYLQWTT   85 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEG---GGTEEEEEESS
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecC---CCCEEEEEECC
Confidence            3568899999999999653  34579999832  11   1   0           01344433322   12245899999


Q ss_pred             CCCCCCeEEEEEEEcCCc-------ee--EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CCe
Q psy670          170 PTKDDGGNYRCNACNSIG-------ES--NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RPE  238 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~  238 (540)
                      ++.+|+|.|.|.+.+..+       ..  .....|.|....   ..+|.+...+....+..|+.+.|.|.+.+ +| .+.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~  162 (226)
T 3mlr_H           86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  162 (226)
T ss_dssp             CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC---CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCE
T ss_pred             CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC---CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeE
Confidence            999999999999976431       11  123456665321   12455543333444568999999999988 55 457


Q ss_pred             EEEEeCCEEeeccCce--EEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          239 VKWFKADKLVKESSKI--KIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       239 v~W~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      +.|  ++..+......  .....+......+.|.|.....+| |.|+|.+.|..+...
T Consensus       163 v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  217 (226)
T 3mlr_H          163 VSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  217 (226)
T ss_dssp             EEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             EEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence            999  44332211100  011111222334578999988888 999999999866543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.49  E-value=3.2e-13  Score=122.92  Aligned_cols=181  Identities=16%  Similarity=0.235  Sum_probs=108.5

Q ss_pred             ccccCCCeEEEEEEEeec--CCCceEEEeC--CEe---e--------------cCCCceEEEEeecCcceEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVLEAS--PMPDIIWYQG--TKV---I--------------EDTGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~--p~~~v~W~~~--~~~---~--------------~~~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      ..+.+|++++|.|.+.+.  ....+.|+|.  +..   +              ....|+.+..+.   .....+|.|.++
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~v  109 (256)
T 3sob_H           33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADT---SKNTAYLQMNSL  109 (256)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEEEEEECSC
T ss_pred             EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeC---CCCEEEEEECCC
Confidence            467899999999999653  2457999983  211   1              011344443322   123357999999


Q ss_pred             CCCCCeEEEEEEEcCCc-----------eeEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cC-CC
Q psy670          171 TKDDGGNYRCNACNSIG-----------ESNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KP-RP  237 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~  237 (540)
                      +.+|+|.|.|.+.+..+           .....+.|.|.....   .+|.+........+.+|+.++|.|.+.+ +| ..
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~---~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAST---KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCC---BCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCC---CCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            99999999999987531           122334566653221   2455543233334568999999999987 55 45


Q ss_pred             eEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          238 EVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       238 ~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      .+.|  ++..+.............++  ...+.|.|.....+| |.|+|.+.+..+.......+.+
T Consensus       187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            7999  44443221110000111222  233578899998889 9999999998766554444443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.49  E-value=4.1e-13  Score=102.31  Aligned_cols=94  Identities=24%  Similarity=0.441  Sum_probs=77.6

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....+.  ..+|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~-~~~~~~--~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA-EEAEGG--LCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEE-EECGGG--EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEE-EECCCC--EEEEEEccCCcCCCEEEEEEE
Confidence            56777777778899999999999999999999999999999876554322 222222  347999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           82 VNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCceeEEEEEEEEC
Confidence            99999999888888864

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=104.72  Aligned_cols=94  Identities=32%  Similarity=0.545  Sum_probs=77.6

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+............++   ..+|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---LHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTT---EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEE
Confidence            55666667778899999999999999999999999999999877655443333222   238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEe
Confidence            99999999898888864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.48  E-value=1.8e-13  Score=102.92  Aligned_cols=89  Identities=19%  Similarity=0.283  Sum_probs=72.8

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+.......  .  ...  ...|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~--~--~~~--~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD--A--KSS--TTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE--E--ETT--EEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE--e--cCC--EEEEEECCCChhcCEEEEE
Confidence            566666667788999999999999999999999999999  7775543221  1  111  2389999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNI  405 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V  405 (540)
                      .|.|..|....++.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEE
Confidence            99999999888888876

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.47  E-value=1.5e-15  Score=134.25  Aligned_cols=140  Identities=11%  Similarity=0.135  Sum_probs=87.0

Q ss_pred             eEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEE
Q psy670          313 TFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       313 ~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .++..|....+.+|+.++|.|.+.+.++   +.|.|  ++..+............++. .....|.|.+++.+|+|.|+|
T Consensus         6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C   83 (214)
T 1ow0_A            6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC   83 (214)
T ss_dssp             CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEE
T ss_pred             EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEE
Confidence            3344466666789999999999998754   68999  44433221000000001111 123478888888899999999


Q ss_pred             EEEcCCeeeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeec-CCcEEEec
Q psy670          389 NIKNFHGELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIRE-VPKVVTIS  467 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~~~~~~~  467 (540)
                      .|.|..+.......+.+..                                           ...+|.+.. .+....+.
T Consensus        84 ~~~~~~~~~~~~~~i~~~~-------------------------------------------~~~~P~v~~~~~~~~~~~  120 (214)
T 1ow0_A           84 TAAYPESKTPLTATLSKSG-------------------------------------------NTFRPEVHLLPPPSEELA  120 (214)
T ss_dssp             EECCSSCSSCEEEEEECCS-------------------------------------------SCCCCEEEEECCCTTTTT
T ss_pred             EEecCCCCCceeEeeccCC-------------------------------------------CCCCCEEEecCCCHHHhc
Confidence            9999876433222332100                                           012555432 22222356


Q ss_pred             CCCeEEEEEEEeeecC--CceEEEecCeecCC
Q psy670          468 KKKTVVIECKVMSMYE--PSVTWMKEKNTVKE  497 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~  497 (540)
                      .|+.++|.|.+.|.++  ++|+|+|||..+..
T Consensus       121 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  152 (214)
T 1ow0_A          121 LNELVTLTCLARGFSPKDVLVRWLQGSQELPR  152 (214)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEECCC
Confidence            7999999999999643  39999999988754

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.47  E-value=1.8e-13  Score=121.94  Aligned_cols=179  Identities=15%  Similarity=0.221  Sum_probs=107.7

Q ss_pred             eeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E---Ee---ec-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K---LV---KE-----------SSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~---~l---~~-----------~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      .+.+.+|++++|.|.+.+.  +...+.|++..  .   .+   ..           ..++......  ......|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v   86 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDK--SISTAYLQWTTL   86 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEG--GGTEEEEEESSC
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecC--CCCEEEEEECCC
Confidence            4667899999999999753  35679999832  1   11   00           1222222221  112357999999


Q ss_pred             CCCCcEEEEEEEEcCCC---------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-C-CCeE
Q psy670          275 IGPDSGTYRCNVKNEFG---------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-P-MPEI  343 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~---------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p-~~~i  343 (540)
                      +.+|+|.|.|.+.+..+         .......+.|...+   ..+|.+...+....+..|+.+.|.|.+.+. | .+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v  163 (226)
T 3mlr_H           87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  163 (226)
T ss_dssp             CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC---CBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC---CCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEE
Confidence            99999999999976421         01122345554321   225555533333345689999999999984 4 4579


Q ss_pred             EEEECCEEccCCCceE-EEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          344 VWFHEGKELQQTDRIS-WNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       344 ~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      .|  ++..+....... .....++. ...+.|.|.....+| |.|+|.|.|..+.......
T Consensus       164 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  221 (226)
T 3mlr_H          164 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  221 (226)
T ss_dssp             EE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             EE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence            99  443332211100 00111222 223479999988888 9999999998876554443

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.47  E-value=6.2e-13  Score=110.41  Aligned_cols=94  Identities=22%  Similarity=0.446  Sum_probs=80.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+....++   ...|.|.+++.+|+|.|+|.|
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a  117 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKA  117 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCC---eEEEEECCCChhcCEEEEEEE
Confidence            66777777778899999999999999999999999999999987776655432222   248999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus       118 ~N~~G~~~~~~~l~V~~  134 (154)
T 1fhg_A          118 VNSLGEATCTAELLVET  134 (154)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCeEEEEEEEEEeC
Confidence            99999999999999887

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.46  E-value=3.1e-13  Score=122.97  Aligned_cols=184  Identities=13%  Similarity=0.195  Sum_probs=109.0

Q ss_pred             eeecCCCCeEEEEEEeccc--CCCeEEEEeCC--E---Eee---c-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSAK--PRPEVKWFKAD--K---LVK---E-----------SSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~--~---~l~---~-----------~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ...+.+|++++|.|.+.+.  ....+.|++..  .   .+.   .           ..++.+....  ......|.|.++
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~v  109 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADT--SKNTAYLQMNSL  109 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEG--GGTEEEEEECSC
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeC--CCCEEEEEECCC
Confidence            3457789999999999753  34579999732  1   110   0           1122222221  122346999999


Q ss_pred             CCCCcEEEEEEEEcCCC-----------CeeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cC-CC
Q psy670          275 IGPDSGTYRCNVKNEFG-----------ESNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KP-MP  341 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p-~~  341 (540)
                      +.+|+|.|.|.+.+..+           .......+.|...+   ..+|.+........+.+|+.++|.|.+.+ .| ..
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~---~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~  186 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS---TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  186 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC---CBCCEEEEECCC-----TTEEEEEEEEEEEBSSCC
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC---CCCCEEEEECCCcccccCCcEEEEEEEEEEECCCe
Confidence            99999999999987431           12223455554321   22555553333334568999999999988 45 34


Q ss_pred             eEEEEECCEEccCCCceE-EEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          342 EIVWFHEGKELQQTDRIS-WNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       342 ~i~W~~~~~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .+.|  ++..+....... .....++.. ..+.|.|.....+| |.|+|.|.|..+.......|.+..
T Consensus       187 ~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~  251 (256)
T 3sob_H          187 TVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS  251 (256)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred             EEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence            7899  554443211100 001112221 23478999988889 999999999987766666665543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=1.1e-12  Score=102.74  Aligned_cols=99  Identities=22%  Similarity=0.341  Sum_probs=83.1

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+....    ....|.|.+++.+|+|.|+|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE----NGSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS----SEEEEEETTCCTTTCEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcC----CEEEEEECCCChhcCEEEEEE
Confidence            3788888888888999999999999999999999999999988776665554321    134899999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeeccCCC
Q psy670          286 VKNEFGESNANLNLNIEAEAEPE  308 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~~~~  308 (540)
                      |.|..|.....+.|.|...+.+.
T Consensus        82 a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EECSSCEEECCEEEEEECSCSCC
T ss_pred             EEECCCcEEEEEEEEEECCCCCC
Confidence            99999988888889988765443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.44  E-value=4.4e-12  Score=106.81  Aligned_cols=154  Identities=15%  Similarity=0.194  Sum_probs=104.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCc-eEEEeC-CEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          112 TIHQDGDLLVMECVLEASPMPD-IIWYQG-TKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~-v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ..|.+|+++.|+|.+. .+.+. +.|.-. ++.....           .......|.|.+++. | |.|.|.+.......
T Consensus         9 ~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~-----------~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~   74 (185)
T 1iam_A            9 VILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQE-D-SQPMCYSNCPDGQS   74 (185)
T ss_dssp             EEEETTEEEEEEEEEC-SSSCSEEEEECSSCEEEECS-----------SSSSEEEEEEEEECS-C-BCCEEEEECSSCEE
T ss_pred             cEEeCCCCEEEEEEcc-CCCCccceEEeeCCCccEec-----------cCCceeEEEEEecCc-C-CEEEEEEECCCCce
Confidence            5689999999999995 45554 777531 1111100           011122688999874 4 89999997765667


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      ...+.|.|+..+      ..+...+....+.+|+.++|.|.+.+ .|..  .|+|++++..+....       .......
T Consensus        75 ~~~~~l~V~~~P------~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-------~~~~~~~  141 (185)
T 1iam_A           75 TAKTFLTVYWTP------ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-------AVGEPAE  141 (185)
T ss_dssp             EEECEEEEEBCC------SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-------CCTTTEE
T ss_pred             EEEEEEEEeCCC------CCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-------CCCcccc
Confidence            888889888632      22333344445778999999999988 6664  489999999886432       0112233


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+|.+...+.+|...|+|+|.+..+.
T Consensus       142 ~tl~~~~~reD~g~~~sC~A~~~l~~  167 (185)
T 1iam_A          142 VTTTVLVRRDHHGAQFSCRTELDLRP  167 (185)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             EEEEEeceeccCCCeEEEEEEecCcc
Confidence            46777766666666999999987663

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=107.38  Aligned_cols=91  Identities=23%  Similarity=0.447  Sum_probs=76.4

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ..++..  ..++     +|.|.+++.+|+|.|+|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~--~~~~-----~L~i~~v~~~D~G~Y~C   79 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--LENG-----VLQIRYAKLGDTGRYTC   79 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE--EETT-----EEEEESCCGGGCCCEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE--ccCC-----EEEEccCCcCCCEEEEE
Confidence            367777777888899999999999999999999999999988864 333322  2222     79999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.|..|....++.|.|..
T Consensus        80 ~a~n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           80 IASTPSGEATWSAYIEVQE   98 (118)
T ss_dssp             EEECSSCEEEEECCEEEEC
T ss_pred             EEEcCCCcEEEEEEEEEEe
Confidence            9999999988888888876

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.43  E-value=8e-13  Score=103.75  Aligned_cols=94  Identities=32%  Similarity=0.521  Sum_probs=78.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.|+..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++...  .++. ...+|.|.+++.+|+|.|+|.
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~--~~~~-~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY--QDNT-GRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEE--ECTT-CEEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEE--eCCC-CeEEEEECCCCcccCEEEEEE
Confidence            67788888888999999999999999999999999999998875 3444332  2221 234799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|..|....++.|.|..
T Consensus        92 a~N~~G~~~~~~~l~V~~  109 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTA  109 (116)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEeC
Confidence            999999999888898876

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.1e-13  Score=104.55  Aligned_cols=96  Identities=29%  Similarity=0.504  Sum_probs=81.2

Q ss_pred             CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       309 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............++   ..+|.|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBCE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCC---eEEEEEeeCCcccCEEEEE
Confidence            3478888888889999999999999999999999999999998876655443332222   2389999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.|..|....++.|.|..
T Consensus        84 ~a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           84 IATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             EEECSSCEEEECCEEEEEC
T ss_pred             EEECCCCEEEEEEEEEEeC
Confidence            9999999999899998876

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=2.8e-12  Score=97.13  Aligned_cols=89  Identities=21%  Similarity=0.335  Sum_probs=74.6

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      ...+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+..  .++  ...|.|.+++.+|+|.|+|.|.|.
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~L~i~~v~~~D~G~Y~C~a~n~   80 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY--EDG--VAILYVKDITKLDDGTYRCKVVND   80 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE--ETT--EEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE--cCC--eEEEEEecCChhhCeEEEEEEECC
Confidence            334566788999999999999997 899999999999998777765533  222  338999999999999999999999


Q ss_pred             CeeeEEEEEEEEEE
Q psy670          394 HGELNANLTLNIEM  407 (540)
Q Consensus       394 ~g~~~~~~~l~V~~  407 (540)
                      .|....++.|.|..
T Consensus        81 ~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           81 YGEDSSYAELFVKG   94 (97)
T ss_dssp             SCEEEEEEEEEETT
T ss_pred             CCeEeEEEEEEEEe
Confidence            99999888888764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.43  E-value=1.4e-12  Score=101.85  Aligned_cols=84  Identities=19%  Similarity=0.247  Sum_probs=70.2

Q ss_pred             eCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe---cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+..+.|.|.+.|+|.|.|+|++||..+....+.......   ++.....+|.|.++...|+|.|+|.|.|..|....+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            36788999999999999999999999999887765444332   122234589999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy670          401 LTLNIEM  407 (540)
Q Consensus       401 ~~l~V~~  407 (540)
                      +.|.|..
T Consensus        93 ~~l~v~~   99 (126)
T 1he7_A           93 IMAAFMD   99 (126)
T ss_dssp             EEECCCS
T ss_pred             EEEEEEc
Confidence            8888876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.42  E-value=1.9e-12  Score=99.06  Aligned_cols=84  Identities=21%  Similarity=0.377  Sum_probs=70.3

Q ss_pred             eCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEe-cCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEE
Q psy670          324 QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL-KGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT  402 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  402 (540)
                      ..+..+.|.|.+.|.|.|.+.|+++|..+............ +......+|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            46888999999999999999999999999877654333322 33344557999999999999999999999999999999


Q ss_pred             EEEEE
Q psy670          403 LNIEM  407 (540)
Q Consensus       403 l~V~~  407 (540)
                      |.|..
T Consensus        94 l~V~~   98 (103)
T 1wwb_X           94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEECC
Confidence            98876

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.42  E-value=2.3e-13  Score=104.91  Aligned_cols=94  Identities=22%  Similarity=0.479  Sum_probs=79.6

Q ss_pred             CCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          309 GDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       309 ~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++....  .+  ...+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C   87 (106)
T 1nct_A           12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT--TK--YKSTFEISSVQASDEGNYSV   87 (106)
T ss_dssp             SCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE--CS--SEEEEEECCCCSSCCSEEEE
T ss_pred             CCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE--CC--CEEEEEECcCCchhCEEEEE
Confidence            347788888888999999999999999999999999999999887766655432  21  12389999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIE  406 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~  406 (540)
                      .|.|..|....++.|.|.
T Consensus        88 ~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           88 VVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CCBCSSCBCCEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            999999998888888774

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=8.6e-13  Score=100.68  Aligned_cols=91  Identities=25%  Similarity=0.516  Sum_probs=76.3

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++..  . .+.    +|.|.+++.+|+|.|+|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--~-~~~----~L~i~~v~~~d~G~Y~C   79 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--Q-EQG----TLQIKNLRISDTGTYTC   79 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--C-TTC----CEEEESCCTTTCCEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--c-CCC----EEEEccCCcccCEEEEE
Confidence            4788888888888999999999999999999999999999888643 22221  1 222    79999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.|..|....++.|.|..
T Consensus        80 ~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           80 VATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EEECSSCCCBCCEEEEEES
T ss_pred             EEEcCCCCEEEEEEEEEec
Confidence            9999999998888888875

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=6e-13  Score=101.11  Aligned_cols=89  Identities=17%  Similarity=0.276  Sum_probs=74.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.|...+....+.+|+.+.|.|.+  .|.+.+.|+++|..+..+.++.+.  .++.  ...|.|.++..+|+|.|+|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~--~~~~--~~~L~I~~v~~~D~G~Y~C~a   80 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVV--QKGR--IHKLVIANALTEDEGDYVFAP   80 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEE--ECSS--EEEEEESSCCGGGCSEEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEE--EeCC--EEEEEECCCChhhCEEEEEEE
Confidence            6677777788899999999999999  888999999999999887776543  2332  237999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|.  ....++.|.|..
T Consensus        81 ~N~--~~~~~a~L~V~~   95 (100)
T 2yuz_A           81 DAY--NVTLPAKVHVIS   95 (100)
T ss_dssp             SSS--CCCEEEEEEEEC
T ss_pred             cCC--CeeEEEEEEEeC
Confidence            998  456777888876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.41  E-value=5.3e-12  Score=96.57  Aligned_cols=85  Identities=20%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEE
Q psy670          115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA  194 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  194 (540)
                      ..|..+.|.|.+.|.|.|.+.|+|+|..+..+.+........+.......|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            46788999999999999999999999999876553232222223334557999999999999999999999999999999


Q ss_pred             EEEec
Q psy670          195 LNFQG  199 (540)
Q Consensus       195 l~v~~  199 (540)
                      |.|..
T Consensus        94 l~V~~   98 (103)
T 1wwb_X           94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEECC
Confidence            98875

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.41  E-value=4.4e-12  Score=111.06  Aligned_cols=171  Identities=19%  Similarity=0.315  Sum_probs=102.1

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--E---Eee-------ccCceEEEEecCCCeEEEEEEEeCCCCCC
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--K---LVK-------ESSKIKIIVNEQDDTYEIICEITDPIGPD  278 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~---~l~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  278 (540)
                      ...+..+.+.+|++++|.|.+.+.+ +.+.|++..  .   .+.       ...++..... ........|.|.+++.+|
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFD-SKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEEC-TTTCSEEEEEECSCCGGG
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEec-cCCCCEEEEEECCCCHHH
Confidence            3445667788999999999998654 479999843  1   110       1223333222 011233579999999999


Q ss_pred             cEEEEEEEEcCCC---------C--eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEcc-CC-CeEEE
Q psy670          279 SGTYRCNVKNEFG---------E--SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAK-PM-PEIVW  345 (540)
Q Consensus       279 ~g~y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~-~~i~W  345 (540)
                      +|.|.|.+.+..+         .  ......|.|.....+ ..+|.+..      .. + .+.|.|.+.+. |. +.|.|
T Consensus        83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~-~~~P~v~~------~~-~-~~~l~C~~~g~~P~~~~v~W  153 (207)
T 1ypz_E           83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP-PAKPSVFI------MK-N-GTNVACLVKDFYPKEVTISL  153 (207)
T ss_dssp             CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC-CCCCEEEE------EE-E-TTEEEEEEEEESSSCCEEEE
T ss_pred             CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC-CCCCeEEE------eC-C-CCeEEEEEeeEeCCCeEEEE
Confidence            9999999988642         1  123356666542111 11333322      11 1 26899999975 54 69999


Q ss_pred             EECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          346 FHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      +++ ..+..... ......++ .+  .+. ......|.|.|+|.|.|..+...
T Consensus       154 ~~~-~~l~~~~~-~~~~~~~g-~y--~~~-~~~~~~~~~~ytC~v~~~~~~~~  200 (207)
T 1ypz_E          154 RSS-KKIVEFDP-AIVISPSG-KY--SAV-KLGQYGDSNSVTCSVQHNSETVH  200 (207)
T ss_dssp             ECS-SEEEECCC-EEEECTTS-SE--EEE-ECEEESSTTTCEEEEEETTEEEE
T ss_pred             ecC-CcccCCcc-ceEEcCCC-cE--EEE-EeecccCCCcEEEEEEECCccEe
Confidence            999 66653322 11112222 22  221 22233678999999999887543

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.40  E-value=1.1e-11  Score=104.36  Aligned_cols=157  Identities=17%  Similarity=0.204  Sum_probs=102.5

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeC-CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKA-DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      |....+.+|+++.|.|.+....+..+.|... ++...         . ..+.....|.|.+++. | |.|.|.+......
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~---------~-~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~   73 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKEL---------L-LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQ   73 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEE---------C-SSSSSEEEEEEEEECS-C-BCCEEEEECSSCE
T ss_pred             CCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccE---------e-ccCCceeEEEEEecCc-C-CEEEEEEECCCCc
Confidence            4456688999999999997533334777531 11111         0 1112224688999874 3 8999998765445


Q ss_pred             eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC--eEEEEECCEEccCCCceEEEEEecCCee
Q psy670          293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKY  369 (540)
Q Consensus       293 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~  369 (540)
                      ....+.|.|...      |..+...+....+.+|+.++|.|.+.| .|..  .|+|++++..+.....       .....
T Consensus        74 ~~~~~~l~V~~~------P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~-------~~~~~  140 (185)
T 1iam_A           74 STAKTFLTVYWT------PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-------VGEPA  140 (185)
T ss_dssp             EEEECEEEEEBC------CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTE
T ss_pred             eEEEEEEEEeCC------CCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC-------CCccc
Confidence            666777777763      333444444456889999999999998 4553  5899999998854210       11112


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          370 HIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       370 ~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..+|++.....+|...|+|+|.|..+
T Consensus       141 ~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          141 EVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             cEEEEEeceeccCCCeEEEEEEecCc
Confidence            23677776555555599999999866

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.40  E-value=2.7e-12  Score=95.84  Aligned_cols=88  Identities=14%  Similarity=0.051  Sum_probs=71.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ++.|...+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++.+.  .++.  ..+|.|.+++.+|+|.|+|.|
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~--~~g~--~~~L~I~~v~~~D~G~Y~C~a   79 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEII--EDGK--KHILILHNCQLGMTGEVSFQA   79 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEE--EETT--EEEEEECSCCGGGCEEEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEE--EECC--EEEEEECCCChhhCEEEEEEE
Confidence            678888888899999999999999976 55789999999999887776554  2333  238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|.    ..+..|.|..
T Consensus        80 ~n~----~~sa~L~V~~   92 (93)
T 1waa_A           80 ANT----KSAANLKVKE   92 (93)
T ss_dssp             TTE----EEEEEEEEEC
T ss_pred             CCC----cEEEEEEEEc
Confidence            884    3456666653

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.40  E-value=2.5e-11  Score=114.13  Aligned_cols=173  Identities=13%  Similarity=0.145  Sum_probs=106.4

Q ss_pred             CccccCCCeEEEEEEEeecC--------------CCceEEEeC--CE--e-e--cCCC---------c-eEEEEe-e---
Q psy670          111 PTIHQDGDLLVMECVLEASP--------------MPDIIWYQG--TK--V-I--EDTG---------R-IKMSKK-S---  155 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--------------~~~v~W~~~--~~--~-~--~~~~---------~-~~~~~~-~---  155 (540)
                      +..+.+|++++|.|.....+              ...+.||+.  |+  . +  ..+.         + ..+... .   
T Consensus       167 sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~  246 (401)
T 3f8u_B          167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP  246 (401)
T ss_dssp             SCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCS
T ss_pred             cEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccccc
Confidence            45688999999999985433              246999973  32  1 1  1110         1 111110 0   


Q ss_pred             cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEecCcCCCCCCCeeccCCceee-cCCCC-eEEEEEEecc
Q psy670          156 IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFAPSFIEKPRIIP-NESGT-LIQMKCKCSA  233 (540)
Q Consensus       156 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~  233 (540)
                      .+......+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..       +|.+...+.... +..|+ .++|.|.+.+
T Consensus       247 ~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-------pP~V~v~p~~~~~~~~G~~~vtL~C~a~G  319 (401)
T 3f8u_B          247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-------PPKVSLMPATLARAAPGEAPPELLCLVSH  319 (401)
T ss_dssp             SCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEESSSCCCCCTTCCCCCEEEEEEE
T ss_pred             ccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-------CCeEeeccCcceeecCCCccEEEEEEecC
Confidence            01234567999999999999999999998887777778888875       565544443333 34676 7999999988


Q ss_pred             -cCC--CeEEEE-eCCE---EeeccCce--EEEEecCCCeE--EEEEEEeCCCCC-CcEEEEEEEEcCC
Q psy670          234 -KPR--PEVKWF-KADK---LVKESSKI--KIIVNEQDDTY--EIICEITDPIGP-DSGTYRCNVKNEF  290 (540)
Q Consensus       234 -~p~--~~v~W~-~~~~---~l~~~~~~--~~~~~~~~~~~--~~~l~i~~~~~~-d~g~y~C~~~~~~  290 (540)
                       +|.  +.|+|. +++.   .+......  .......++.+  .+.|.+...+.+ +.+.|+|.+.|..
T Consensus       320 fyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          320 FYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             CcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence             566  789995 7651   12111100  00011122333  345666554333 4459999999865

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=1.9e-12  Score=98.56  Aligned_cols=94  Identities=24%  Similarity=0.363  Sum_probs=77.7

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............   ...|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEEE
Confidence            66777777788889999999999999999999999999999887666544332222   347999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|..|.....+.|.|..
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           82 INIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCcEEEEEEEEEec
Confidence            99999888887777753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.5e-12  Score=101.40  Aligned_cols=85  Identities=18%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..+..+.  ..+.  ...|.|.++..+|+|.|+|.|.|..|..
T Consensus        31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~--~~~~--~~~L~i~~~~~~D~G~Y~C~a~N~~G~~  105 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVR--TSDF--DTVFFVRQAARSDSGEYELSVQIENMKD  105 (118)
T ss_dssp             SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEE--ECSS--EEEEEESSCCTTTCEEEEEEEECSSCEE
T ss_pred             CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEE--ECCC--eEEEEECCCChhcCEEEEEEEEeCCCeE
Confidence            356778899999999999999999999999999986 3333332  2222  2379999999999999999999999998


Q ss_pred             EEEEEEEEEE
Q psy670          398 NANLTLNIEM  407 (540)
Q Consensus       398 ~~~~~l~V~~  407 (540)
                      ..++.|.|..
T Consensus       106 ~~~~~l~V~~  115 (118)
T 2e7c_A          106 TATIRIRVVE  115 (118)
T ss_dssp             CCEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            8888888876

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.39  E-value=1.8e-12  Score=97.77  Aligned_cols=86  Identities=23%  Similarity=0.494  Sum_probs=72.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+....++...    +.    .|.|.+++.+|+|.|+|.|
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~----~L~i~~~~~~D~G~Y~C~a   79 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GE----EVEVRDSIPADSGLYACVT   79 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SS----EEEESSCCGGGSEEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CC----EEEECCCChHHCEEEEEEe
Confidence            56666667778899999999999999987 799999999988776654432    22    8999999999999999999


Q ss_pred             EcCCeeeEEEEEEEE
Q psy670          391 KNFHGELNANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V  405 (540)
                      .|..|....++.|.|
T Consensus        80 ~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           80 SSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEEE
Confidence            999999888888876

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=9.1e-13  Score=102.54  Aligned_cols=95  Identities=26%  Similarity=0.458  Sum_probs=78.0

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+....++   ...|.|.+++.+|+|.|+|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG---TCSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTC---EEEEEESSCCTTTCSCCEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCc---EEEEEECCCChhhCEEEEE
Confidence            367777777788899999999999999999999999999998875 344433322122   2479999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.|..|.....+.|.|..
T Consensus        84 ~a~N~~g~~~~~~~l~V~~  102 (110)
T 2dm2_A           84 MAANPQGRISCTGRLMVQA  102 (110)
T ss_dssp             EEECTTCCEEECCCEEEEC
T ss_pred             EEEECCCeEEEEEEEEEEC
Confidence            9999999998888888876

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.39  E-value=5.9e-12  Score=97.41  Aligned_cols=96  Identities=17%  Similarity=0.322  Sum_probs=73.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCC---CeEEEEECCEEccC---CCceEEEEEec--CCeeEEEEEEcCCCCCC
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQ---TDRISWNVTLK--GDKYHIRLEVKDPRKED  382 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~~i~W~~~~~~~~~---~~~~~~~~~~~--~~~~~~~L~i~~~~~~d  382 (540)
                      .|.++..|....+.+|+.++|.|.+.|.|.   +.|.|++++.....   ..++.+.....  .......|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            566777788888999999999999999998   99999998732211   12333321111  12234589999999999


Q ss_pred             CeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          383 TGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       383 ~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      +|.|+|.|.|..|....++.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999885

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=3.5e-12  Score=99.68  Aligned_cols=97  Identities=22%  Similarity=0.366  Sum_probs=74.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCEE-cc--CCCceEEEEEe--cCCeeEEEEEEcCCCCCC
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGKE-LQ--QTDRISWNVTL--KGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d  382 (540)
                      .+.|+..|....+.+|+.++|.|.+.+.   |.|.|.|+|+... +.  ...++.+....  ....+..+|.|.+++..|
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            3456777888899999999999999875   8899999997421 11  12333332111  122234589999999999


Q ss_pred             CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          383 TGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       383 ~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|+|.|.|..|..+.++.|.|.+
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999999999999999987

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.39  E-value=5.1e-13  Score=103.66  Aligned_cols=92  Identities=25%  Similarity=0.468  Sum_probs=69.0

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........  ...+.    .|.|.+++.+|+|.|+|.|
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~~~~~----~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNR----NLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE--ETTTT----EEEECSCCGGGCEEEEEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE--eCCCc----EEEEeecCcccCEEEEEEE
Confidence            66676677788899999999999999999999999999998876655433  22222    7999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEMV  408 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~~  408 (540)
                      .|..|....++.|.|...
T Consensus        84 ~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           84 CSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             C----CEEEEEEEEEEC-
T ss_pred             EeCCCceEEEEEEEEeCC
Confidence            999999999999988763

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.38  E-value=6.5e-12  Score=98.07  Aligned_cols=86  Identities=22%  Similarity=0.346  Sum_probs=69.6

Q ss_pred             CCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEee--cCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEE
Q psy670          116 DGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKS--IGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANI  193 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  193 (540)
                      .+..+.|.|.+.|+|.|.|+|+|||..+..+.+.......  .........|.|.++...|+|.|+|.|.|..|.....+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            6778999999999999999999999999877665433221  11112345899999999999999999999999999999


Q ss_pred             EEEEecCc
Q psy670          194 ALNFQGGE  201 (540)
Q Consensus       194 ~l~v~~~~  201 (540)
                      .|.|...+
T Consensus        94 ~l~v~~~P  101 (126)
T 1he7_A           94 MAAFMDNP  101 (126)
T ss_dssp             EECCCSCT
T ss_pred             EEEEEcCC
Confidence            99887643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.38  E-value=2.4e-12  Score=98.20  Aligned_cols=94  Identities=29%  Similarity=0.510  Sum_probs=77.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............. +  ...|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-~--~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK-G--LHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT-T--EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC-C--eEEEEECCCCcccCEEEEEEE
Confidence            6777777778888999999999999999999999999999887765444333322 1  247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|..|.....+.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEe
Confidence            99999888888887754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=98.44  Aligned_cols=88  Identities=26%  Similarity=0.521  Sum_probs=73.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+.......    ..+   ...|.|.++..+|+|.|+|.|
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~----~~~---~~~L~i~~v~~~D~G~Y~C~a   83 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC----EAG---VAELHIQDALPEDHGTYTCLA   83 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE----ETT---EEEEEECSCCTTCCBCEEEEE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe----eCC---eEEEEECCCChhhCEEEEEEE
Confidence            6677777778889999999999999999999999999998886544321    112   238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEE
Q psy670          391 KNFHGELNANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V  405 (540)
                      .|..|....++.|.|
T Consensus        84 ~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           84 ENALGQVSCSAWVTV   98 (99)
T ss_dssp             ECSSCEEEEECCEEE
T ss_pred             EECCCeEEEEEEEEE
Confidence            999999888887776

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=1.3e-11  Score=108.09  Aligned_cols=157  Identities=17%  Similarity=0.291  Sum_probs=93.9

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEcc----------CCCceEEEEEec-CCeeEEEEEEcCCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KELQ----------QTDRISWNVTLK-GDKYHIRLEVKDPRKE  381 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~~----------~~~~~~~~~~~~-~~~~~~~L~i~~~~~~  381 (540)
                      ...+..+.+.+|++++|.|.+.+.+ +.+.|++..  ..+.          ...++...  .+ ......+|.|.+++.+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~~L~I~~v~~~   81 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSA--FDSKERRYSTLHIRDAQLE   81 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEE--ECTTTCSEEEEEECSCCGG
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEE--eccCCCCEEEEEECCCCHH
Confidence            3445667889999999999998654 489999853  1110          12233222  22 1122348999999999


Q ss_pred             CCeeEEEEEEcCCe---------e--eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670          382 DTGLYKCNIKNFHG---------E--LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT  450 (540)
Q Consensus       382 d~G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (540)
                      |+|.|.|.+.+..+         .  ......|.|....                                        .
T Consensus        82 D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~----------------------------------------~  121 (207)
T 1ypz_E           82 DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKS----------------------------------------Q  121 (207)
T ss_dssp             GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCC----------------------------------------C
T ss_pred             HCEEEEEEEecCCcccccccccceeeecCccEEEEccCC----------------------------------------C
Confidence            99999999998642         1  1123456665300                                        0


Q ss_pred             eeeeceeecCCcEEEecCCCeEEEEEEEeeecC--CceEEEecCeecCCC---------CeEEE-EEEe-cCCeEEEEEE
Q psy670          451 LSVVPVIREVPKVVTISKKKTVVIECKVMSMYE--PSVTWMKEKNTVKED---------NKHVV-HIEQ-VKDVSMNFEL  517 (540)
Q Consensus       451 ~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~p~--~~v~W~~~~~~l~~~---------~~~~~-~~~~-~~~g~y~c~~  517 (540)
                      ...+|.+..       ..+ .++|.|.+.|.++  +.++|+++ ..+...         ..+.+ .... .+.|.|+|.+
T Consensus       122 ~~~~P~v~~-------~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v  192 (207)
T 1ypz_E          122 PPAKPSVFI-------MKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSV  192 (207)
T ss_dssp             CCCCCEEEE-------EEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEE
T ss_pred             CCCCCeEEE-------eCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEE
Confidence            001333322       111 2689999998644  69999999 655322         22333 2222 4568888888


Q ss_pred             eeeeee
Q psy670          518 WLGIVE  523 (540)
Q Consensus       518 ~~~~~~  523 (540)
                      ......
T Consensus       193 ~~~~~~  198 (207)
T 1ypz_E          193 QHNSET  198 (207)
T ss_dssp             EETTEE
T ss_pred             EECCcc
Confidence            765443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.36  E-value=8.2e-12  Score=93.22  Aligned_cols=84  Identities=19%  Similarity=0.368  Sum_probs=69.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ++.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....         .    .|.|.+++.+|+|.|+|.|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~----~L~i~~v~~~d~G~Y~C~a   69 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------K----LYMVPYVDLEHQGTYWCHV   69 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------S----EEEESSCCGGGCEEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------C----eEEECCCCHHhCEEEEEEE
Confidence            45666677778899999999999999999999999999998865432         1    7999999999999999999


Q ss_pred             EcCCeeeE-EEEEEEEEE
Q psy670          391 KNFHGELN-ANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~-~~~~l~V~~  407 (540)
                      .|..|... ..+.|.|..
T Consensus        70 ~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           70 YNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             ECSSCEEECCCEEEEEC-
T ss_pred             EcCCCCEEeeeEEEEEeh
Confidence            99998654 556676654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=1.9e-11  Score=95.48  Aligned_cols=89  Identities=16%  Similarity=0.343  Sum_probs=67.6

Q ss_pred             CccccCCCeEEEEEEEeec---CCCceEEEeCCEe-ec--CCCceEEEEe-ecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKV-IE--DTGRIKMSKK-SIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      .+.+.+|++++|.|.+.+.   |.|.|.|||+... +.  ...++.+... ..........|.|.+++..|+|.|+|++.
T Consensus        16 ~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevs   95 (126)
T 2dav_A           16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   95 (126)
T ss_dssp             CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEE
Confidence            3468999999999999764   8899999997422 11  1344444321 11222235699999999999999999999


Q ss_pred             cCCceeEEEEEEEEec
Q psy670          184 NSIGESNANIALNFQG  199 (540)
Q Consensus       184 ~~~~~~~~~~~l~v~~  199 (540)
                      |..+..+..+.|+|..
T Consensus        96 n~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           96 YKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CSSCEEEECCEEEEEC
T ss_pred             eCCCcEEEEEEEEEEe
Confidence            9999999999999986

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.35  E-value=4.5e-12  Score=97.26  Aligned_cols=93  Identities=30%  Similarity=0.388  Sum_probs=78.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.....    ...|.|.+++.+|+|.|+|.+
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG----VLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCC----EEEEEEcCCCcccCEEEEEEE
Confidence            6677777778888899999999999999999999999999988776655543221    247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|..|.....+.|.|..
T Consensus        84 ~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           84 TNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEEEEEEEEEEC
Confidence            99999888888888764

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.35  E-value=2e-12  Score=98.69  Aligned_cols=83  Identities=27%  Similarity=0.551  Sum_probs=67.5

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceE-EEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRIS-WNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....... .....++.    +|.|.+++.+|+|.|+|.|.|..|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW----SLIMESVVPSDKGNYTCVVENEYGSI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGT----EEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeE----EEEEccCCcCCCEEEEEEEEeCCCEE
Confidence            45678899999999999999999999999999887644321 11222222    79999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy670          398 NANLTLNI  405 (540)
Q Consensus       398 ~~~~~l~V  405 (540)
                      ..++.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888876

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.35  E-value=2.8e-12  Score=117.30  Aligned_cols=179  Identities=15%  Similarity=0.273  Sum_probs=106.0

Q ss_pred             CccccCCCeEEEEEEEee--cCCCceEEEeC--CEe---e---cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEA--SPMPDIIWYQG--TKV---I---ED-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~--~~~---~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++++|.|.+.+  .....+.|||.  +..   +   ..           ..|+.+..+.   .....+|.|.+
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~  108 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDS---GASTVYMELRG  108 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECG---GGCCEEEEECS
T ss_pred             CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcC---CCCEEEEEECC
Confidence            356889999999999954  24468999983  211   1   00           1233333221   22334799999


Q ss_pred             CCCCCCeEEEEEEEcC------Cc------------e-------eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCe
Q psy670          170 PTKDDGGNYRCNACNS------IG------------E-------SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTL  224 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~  224 (540)
                      ++.+|+|.|.|.+.+.      .+            .       ......|.|....   ..+|.+...+.......|+.
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~  185 (267)
T 3u1s_H          109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS---TKGPSVFPLAPSSKSTSGGT  185 (267)
T ss_dssp             CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCGGGEETTE
T ss_pred             CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC---CCCCEEEEecCCcccCCCCc
Confidence            9999999999999621      00            0       1113455665311   12455542222223357899


Q ss_pred             EEEEEEecc-cC-CCeEEEEeCCEEeeccCceE--EEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEE
Q psy670          225 IQMKCKCSA-KP-RPEVKWFKADKLVKESSKIK--IIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLN  298 (540)
Q Consensus       225 ~~l~C~~~~-~p-~~~v~W~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  298 (540)
                      ++|.|.+.+ +| .+.+.|  ++..+.......  ....+......+.|.|.....+| +.|+|.+.+..+.......
T Consensus       186 ~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  260 (267)
T 3u1s_H          186 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  260 (267)
T ss_dssp             EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEE
T ss_pred             EEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEE
Confidence            999999987 55 567999  554443211110  11111222334578898888888 9999999997655443333

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.35  E-value=8.8e-12  Score=94.35  Aligned_cols=85  Identities=24%  Similarity=0.497  Sum_probs=71.9

Q ss_pred             CCccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          110 KPTIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ....+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+...     .....|.|.+++.+|+|.|+|.+.|..|.
T Consensus         9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            34678899999999999997 8899999999999887777665432     12348999999999999999999999999


Q ss_pred             eEEEEEEEEec
Q psy670          189 SNANIALNFQG  199 (540)
Q Consensus       189 ~~~~~~l~v~~  199 (540)
                      ....+.|.|.+
T Consensus        84 ~~~~~~l~V~~   94 (97)
T 2bk8_A           84 DSSYAELFVKG   94 (97)
T ss_dssp             EEEEEEEEETT
T ss_pred             EeEEEEEEEEe
Confidence            88888888864

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.35  E-value=6.1e-12  Score=99.16  Aligned_cols=82  Identities=22%  Similarity=0.312  Sum_probs=69.3

Q ss_pred             CCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      .....|.|.+.|.|.|.+.|+++|..+.............+......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        20 ~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            36678999999999999999999999988776665554443334558999999999999999999999999999888877


Q ss_pred             EE
Q psy670          406 EM  407 (540)
Q Consensus       406 ~~  407 (540)
                      ..
T Consensus       100 ~~  101 (118)
T 1wwc_A          100 LK  101 (118)
T ss_dssp             SC
T ss_pred             cc
Confidence            66

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.35  E-value=1.2e-11  Score=96.99  Aligned_cols=97  Identities=27%  Similarity=0.451  Sum_probs=80.0

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .+|.|+..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.... .  ...+|.|.+++.+|+|.|+|
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-~--~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN-T--GRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT-T--CEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC-C--CeEEEEECCCCcccCEEEEE
Confidence            4788888888899999999999999999999999999999988753 444443322 1  23479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEeecc
Q psy670          285 NVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      .+.|..|.....+.|.|...+
T Consensus        91 ~a~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EEEETTEEEEEEEEEEEECCS
T ss_pred             EEEcCCCeEEEEEEEEEeCCC
Confidence            999999988888888887643

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=3e-12  Score=101.00  Aligned_cols=93  Identities=22%  Similarity=0.337  Sum_probs=76.6

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++..... .      .|.|.+++.+|+|.|+|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~-~------~L~i~~v~~~D~G~Y~C   79 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-G------VLQIRYAKLGDTGRYTC   79 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEET-T------EEEEESCCGGGCCCEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccC-C------EEEEccCCcCCCEEEEE
Confidence            4777887888888999999999999999999999999999888643 33333221 1      79999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEeecc
Q psy670          285 NVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      .+.|..|.....+.|.|...+
T Consensus        80 ~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           80 IASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             EEECSSCEEEEECCEEEECCS
T ss_pred             EEEcCCCcEEEEEEEEEEeCC
Confidence            999999988888888887643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.35  E-value=1.8e-13  Score=108.72  Aligned_cols=96  Identities=18%  Similarity=0.345  Sum_probs=78.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccC--CCceEEEEEecCCeeEEEEEEcCCCCCCC-eeE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQ--TDRISWNVTLKGDKYHIRLEVKDPRKEDT-GLY  386 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y  386 (540)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|. |.|++++..+..  ..++.......+....++|.|.++..+|. |.|
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y   92 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   92 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceE
Confidence            667766 6677788999999999999999987 999999988875  34444433333444456899999999998 999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|.|..|.....+.|.|..
T Consensus        93 ~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           93 NCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             EEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEECCCCeEEEEEEEEECC
Confidence            999999999999888888875

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.9e-12  Score=97.73  Aligned_cols=97  Identities=26%  Similarity=0.421  Sum_probs=74.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCE-EccC--CCceEEEEEec--CCeeEEEEEEcCCCCCC
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGK-ELQQ--TDRISWNVTLK--GDKYHIRLEVKDPRKED  382 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~-~~~~--~~~~~~~~~~~--~~~~~~~L~i~~~~~~d  382 (540)
                      .+.|+..|..+.+.+|+.++|.|.+.+.   |.|.|.|+|+.. .+..  ...+.+.....  ......+|.|.++...|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4567777888899999999999999985   789999999742 2221  22333322111  22234589999999999


Q ss_pred             CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          383 TGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       383 ~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|+|.|.|..|..++++.|.|..
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            9999999999999999999999875

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.34  E-value=4.6e-12  Score=96.40  Aligned_cols=93  Identities=20%  Similarity=0.336  Sum_probs=75.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+............   .....|.|.+++.+|+|.|+|.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE---GGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECG---GGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC---CCEEEEEEccCCcCCCEEEEEEE
Confidence            666767777778889999999999999999999999999988765443332221   12247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEe
Q psy670          287 KNEFGESNANLNLNIE  302 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~  302 (540)
                      .|..|.....+.|.|.
T Consensus        82 ~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           82 VNEYGARQCEARLEVR   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCceeEEEEEEEE
Confidence            9999988877777775

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.34  E-value=3.4e-12  Score=95.76  Aligned_cols=89  Identities=21%  Similarity=0.367  Sum_probs=71.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCC--EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKAD--KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      +|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++  ..+.......  ..    .....|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~--~~----~~~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD--AK----SSTTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEE--EE----TTEEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEE--ec----CCEEEEEECCCChhcCEEEEE
Confidence            566766677888999999999999999999999999999  7765442221  11    112479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEE
Q psy670          285 NVKNEFGESNANLNLNI  301 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v  301 (540)
                      .|.|..|.....+.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEE
Confidence            99999998777777765

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.34  E-value=4.2e-12  Score=116.11  Aligned_cols=182  Identities=14%  Similarity=0.271  Sum_probs=106.7

Q ss_pred             eeecCCCCeEEEEEEecc--cCCCeEEEEeCC--E---Eee---c-----------cCceEEEEecCCCeEEEEEEEeCC
Q psy670          216 IIPNESGTLIQMKCKCSA--KPRPEVKWFKAD--K---LVK---E-----------SSKIKIIVNEQDDTYEIICEITDP  274 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~---~l~---~-----------~~~~~~~~~~~~~~~~~~l~i~~~  274 (540)
                      ...+.+|++++|.|.+.+  .....+.|++..  .   .+.   .           ..++.....  .......|.|.++
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~v  109 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRD--SGASTVYMELRGL  109 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEEC--GGGCCEEEEECSC
T ss_pred             CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEc--CCCCEEEEEECCC
Confidence            356789999999999965  345679999832  1   110   0           112222221  1223347999999


Q ss_pred             CCCCcEEEEEEEEcC------CC------------C-------eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeE
Q psy670          275 IGPDSGTYRCNVKNE------FG------------E-------SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLV  329 (540)
Q Consensus       275 ~~~d~g~y~C~~~~~------~~------------~-------~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v  329 (540)
                      +.+|+|.|.|.+.+.      .+            .       ......+.|....   ..+|.+...+.......|+.+
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~---~~~P~v~~~~~~~~~~~g~~~  186 (267)
T 3u1s_H          110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS---TKGPSVFPLAPSSKSTSGGTA  186 (267)
T ss_dssp             CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC---CBCCEEEEECCCGGGEETTEE
T ss_pred             ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC---CCCCEEEEecCCcccCCCCcE
Confidence            999999999998620      00            0       1112345554211   125555432222223578999


Q ss_pred             EEEEEEEc-cC-CCeEEEEECCEEccCCCceEEEEEe-cCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          330 VMECKVKA-KP-MPEIVWFHEGKELQQTDRISWNVTL-KGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       330 ~l~C~~~~-~p-~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|.|.+.+ .| .+.+.|  ++..+............ ++.. ..+.|.|.....+| +.|+|.|.|..+.......+.+
T Consensus       187 ~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          187 ALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             EEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence            99999987 45 457999  55544321110000111 2222 23478898888888 9999999998766555555444

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.4e-11  Score=97.13  Aligned_cols=84  Identities=17%  Similarity=0.377  Sum_probs=69.9

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+.+.|.|.+.|.|.+.+.|+|++..+. ..+..+..     ......|.|.++..+|+|.|+|.+.|..|..
T Consensus        32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~  105 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-----SDFDTVFFVRQAARSDSGEYELSVQIENMKD  105 (118)
T ss_dssp             SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-----CSSEEEEEESSCCTTTCEEEEEEEECSSCEE
T ss_pred             CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-----CCCeEEEEECCCChhcCEEEEEEEEeCCCeE
Confidence            45678899999999999999999999999999986 34444332     1123479999999999999999999999988


Q ss_pred             EEEEEEEEec
Q psy670          190 NANIALNFQG  199 (540)
Q Consensus       190 ~~~~~l~v~~  199 (540)
                      ...+.|.|.+
T Consensus       106 ~~~~~l~V~~  115 (118)
T 2e7c_A          106 TATIRIRVVE  115 (118)
T ss_dssp             CCEEEEEEEC
T ss_pred             EEEEEEEEEc
Confidence            8888888875

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.9e-12  Score=96.85  Aligned_cols=97  Identities=23%  Similarity=0.334  Sum_probs=79.1

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+... ..+  ...|.|.+++.+|+|.|+|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~-~~~--~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD-LDG--TCSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC-TTC--EEEEEESSCCTTTCSCCEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC-CCc--EEEEEECCCChhhCEEEEE
Confidence            4777877788888999999999999999999999999999888753 34443332 122  2479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEeecc
Q psy670          285 NVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      .+.|..|.....+.|.|...+
T Consensus        84 ~a~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           84 MAANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             EEECTTCCEEECCCEEEECCS
T ss_pred             EEEECCCeEEEEEEEEEECCC
Confidence            999999998888888887643

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.32  E-value=4e-11  Score=112.83  Aligned_cols=173  Identities=16%  Similarity=0.176  Sum_probs=104.9

Q ss_pred             ceeecCCCCeEEEEEEecccC--------------CCeEEEEeC--CE--Eee---ccC---------c-eEEEEe-cC-
Q psy670          215 RIIPNESGTLIQMKCKCSAKP--------------RPEVKWFKA--DK--LVK---ESS---------K-IKIIVN-EQ-  261 (540)
Q Consensus       215 ~~~~~~~g~~~~l~C~~~~~p--------------~~~v~W~~~--~~--~l~---~~~---------~-~~~~~~-~~-  261 (540)
                      ..+.+..|++++|.|.....+              ...+.|++.  |+  .+.   .+.         . ..+... .. 
T Consensus       166 ~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~  245 (401)
T 3f8u_B          166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE  245 (401)
T ss_dssp             SSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCC
T ss_pred             CcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccc
Confidence            345677899999999986432              346999873  32  111   110         0 111111 01 


Q ss_pred             ---CCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEEeeccCCCCCCCeEEeCCceEE-eeCCC-eEEEEEEEE
Q psy670          262 ---DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKPKIRS-EQGGK-LVVMECKVK  336 (540)
Q Consensus       262 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~-~~~g~-~v~l~C~~~  336 (540)
                         ......+|.|.+++.+|.|.|.|.+.+..+.....+.+.|..       +|.+...+.... ...|+ .++|.|.+.
T Consensus       246 ~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-------pP~V~v~p~~~~~~~~G~~~vtL~C~a~  318 (401)
T 3f8u_B          246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-------PPKVSLMPATLARAAPGEAPPELLCLVS  318 (401)
T ss_dssp             SSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-------CCEEEEESSSCCCCCTTCCCCCEEEEEE
T ss_pred             cccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-------CCeEeeccCcceeecCCCccEEEEEEec
Confidence               123457999999999999999999998877666667777765       555554443332 34676 799999999


Q ss_pred             cc-CC--CeEEEE-ECCE---EccCCCce---EEEEEecCCe-eEEEEEEcCCCCCC-CeeEEEEEEcCC
Q psy670          337 AK-PM--PEIVWF-HEGK---ELQQTDRI---SWNVTLKGDK-YHIRLEVKDPRKED-TGLYKCNIKNFH  394 (540)
Q Consensus       337 ~~-p~--~~i~W~-~~~~---~~~~~~~~---~~~~~~~~~~-~~~~L~i~~~~~~d-~G~Y~C~a~n~~  394 (540)
                      +. |.  +.|.|. +++.   .+......   ......++.. ..+.|.+...+.++ .+.|+|.+.|..
T Consensus       319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            84 65  689995 7752   11111100   0011122222 23357766654334 459999999976

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.32  E-value=8.1e-12  Score=95.02  Aligned_cols=93  Identities=27%  Similarity=0.458  Sum_probs=77.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.....    ...|.|.+++.+|+|.|+|.+
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG----GFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCC----EEEEEECCCCcccCEEEEEEE
Confidence            5667777777888899999999999999999999999999988776665543321    247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|..|.....+.|.|..
T Consensus        82 ~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EeCCCcEeEEEEEEEEe
Confidence            99999888887777753

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.32  E-value=2.7e-12  Score=93.55  Aligned_cols=80  Identities=19%  Similarity=0.382  Sum_probs=63.6

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ..+.+.+|+.+.|.|.+.+ |.|.|.|+++|..+..+.++.+..  ++..  .+|.|.++..+|+|.|+|.|.|.    .
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~--~~~~--~~L~I~~~~~~D~G~Y~C~a~n~----~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ--AGAR--QVLRVQGARSGDAGEYLCDAPQD----S   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE--CSSC--EEEEESSCSSTTCEEEEEECTTT----C
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee--cCCe--EEEEecCCCCcccEEEEEEECCE----E
Confidence            4567889999999999865 888999999999998887766543  3332  27999999999999999998664    4


Q ss_pred             EEEEEEEEE
Q psy670          399 ANLTLNIEM  407 (540)
Q Consensus       399 ~~~~l~V~~  407 (540)
                      .++.|.|..
T Consensus        75 ~~a~l~V~e   83 (84)
T 2lu7_A           75 RIFLVSVEE   83 (84)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEEC
Confidence            556666653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3e-12  Score=99.62  Aligned_cols=98  Identities=31%  Similarity=0.554  Sum_probs=81.7

Q ss_pred             CCCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          205 GFAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       205 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .++|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..............   ...|.|.+++.+|+|.|+|
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBCE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCC---eEEEEEeeCCcccCEEEEE
Confidence            4578888888888999999999999999999999999999988876655544433222   2479999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEeecc
Q psy670          285 NVKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~~~  305 (540)
                      .+.|..|.....+.|.|...+
T Consensus        84 ~a~n~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           84 IATNRAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             EEECSSCEEEECCEEEEECCC
T ss_pred             EEECCCCEEEEEEEEEEeCCC
Confidence            999999988888888887744

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.31  E-value=1.7e-11  Score=97.25  Aligned_cols=88  Identities=15%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             ceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEccC-----CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          319 KIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKELQQ-----TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      ....+.+|+.+.|.|.+.|.  |.+.+.|++++..+..     ....... ........++|.|.+++.+|+|.|+|.|.
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE-ETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc-CCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            34577889999999999984  4568999998874421     1111100 00001123489999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIEM  407 (540)
Q Consensus       392 n~~g~~~~~~~l~V~~  407 (540)
                      |..|....++.|.|..
T Consensus        95 n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEec
Confidence            9999999999999988

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.31  E-value=4e-12  Score=92.59  Aligned_cols=68  Identities=24%  Similarity=0.331  Sum_probs=55.4

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      +.|.+.| |.      |.+.|||||.+|..+.++++......      ++|+|.+++.+|+|.|+|.|.|    .+.++.
T Consensus        16 l~C~vs~-p~------p~v~W~k~g~~l~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A           16 LVVHLSG-PG------GPVRWYKDGERLASQGRVQLEQAGAR------QVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             EECCCSC-CS------TTCEEEETTEECCCCSSEEEEECSSC------EEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             EEEEECC-CC------cEEEEEECCEEccccccEEEeecCCe------EEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            5688765 76      88999999999999999888765443      6899999999999999998844    456677


Q ss_pred             EEEee
Q psy670           88 LNFSE   92 (540)
Q Consensus        88 l~v~~   92 (540)
                      |.|..
T Consensus        79 l~V~e   83 (84)
T 2lu7_A           79 VSVEE   83 (84)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            77753

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.31  E-value=4e-12  Score=98.51  Aligned_cols=92  Identities=24%  Similarity=0.403  Sum_probs=68.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........  ..    ..|.|.+++.+|+|.|+|.+
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~----~~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GN----RNLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TT----TEEEECSCCGGGCEEEEEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CC----cEEEEeecCcccCEEEEEEE
Confidence            7777777888888999999999999999999999999998887655543321  11    26999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEeec
Q psy670          287 KNEFGESNANLNLNIEAE  304 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~~  304 (540)
                      .|..|.....+.|.|...
T Consensus        84 ~n~~g~~~~~~~l~V~~~  101 (108)
T 3kvq_A           84 CSVLGCAKVEAFFIIEGA  101 (108)
T ss_dssp             C----CEEEEEEEEEEC-
T ss_pred             EeCCCceEEEEEEEEeCC
Confidence            999999888888888763

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.31  E-value=2.5e-11  Score=103.04  Aligned_cols=164  Identities=14%  Similarity=0.155  Sum_probs=102.4

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .|....+..|+++.|+|.+.. +.+ .+.|.-.-.      +   .....+... ..+.|.+++ +|.+.|.|.+.....
T Consensus         8 ~P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~------~---~~~~~g~~~-~~~~ls~vs-~d~~~~~C~~~c~~~   75 (196)
T 3bn3_B            8 QPRVAFVERGGSLWLNCSTNC-PRPERGGLETSLR------R---NGTQRGLRW-LARQLVDIR-EPETQPVCFFRCARR   75 (196)
T ss_dssp             ESSEEEEETTEEEEEEEEECC-SSCSEEEEECSSE------E---EEEEEETTE-EEEEEEEEC-SSEECCEEEEEETTE
T ss_pred             cCCCcEEcCCCeEEEEEeCCC-CCCCccEEEEccC------C---eeEccccCc-eEEEEEEEc-cCCCceEEEEECCCC
Confidence            345567899999999999964 444 677753211      0   001111111 147888888 787879999877667


Q ss_pred             eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEE
Q psy670          396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE  475 (540)
Q Consensus       396 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~  475 (540)
                      ...+++.|.|...|                                           ..+.|...+  ..+.+|+.++|.
T Consensus        76 ~~~~~v~l~Vy~~P-------------------------------------------~~v~i~~~~--~~~~~G~~~tL~  110 (196)
T 3bn3_B           76 TLQARGLIRTFQRP-------------------------------------------DRVELMPLP--PWQPVGENFTLS  110 (196)
T ss_dssp             EEEEECEEEEEBCC-------------------------------------------CCCEECCCC--SSEETTSEEEEE
T ss_pred             ceEEEEEEEEecCC-------------------------------------------CcCEEccCC--ccccCCCcEEEE
Confidence            77888888887621                                           122333322  236789999999


Q ss_pred             EEEeeecC-Cc--eEEEecCeecCCC-------------CeEEEEEEecCCe-EEEEEEeeeee-------eeeCCeeEE
Q psy670          476 CKVMSMYE-PS--VTWMKEKNTVKED-------------NKHVVHIEQVKDV-SMNFELWLGIV-------EKRGPSIKI  531 (540)
Q Consensus       476 C~v~g~p~-~~--v~W~~~~~~l~~~-------------~~~~~~~~~~~~g-~y~c~~~~~~~-------~~~~~~~~~  531 (540)
                      |.+.|..+ ..  |+|||+++.+...             ....+...+.|.| .|+|++.+.-.       +.......+
T Consensus       111 C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~~~G~~l~~~~s~p~~L  190 (196)
T 3bn3_B          111 CRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPREL  190 (196)
T ss_dssp             EEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECGGGTSCEEEEECCCEEC
T ss_pred             EEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCCccCCCccccccCCeEE
Confidence            99998544 44  7999999876411             1123344455555 99999996433       223333444


Q ss_pred             EEEecc
Q psy670          532 IYYIAP  537 (540)
Q Consensus       532 ~~~~~~  537 (540)
                      -+|+.|
T Consensus       191 ~v~~~~  196 (196)
T 3bn3_B          191 RTFSLS  196 (196)
T ss_dssp             CEECCC
T ss_pred             EEeecC
Confidence            456554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1e-11  Score=94.57  Aligned_cols=91  Identities=23%  Similarity=0.378  Sum_probs=74.7

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .....  ...     ..|.|.+++.+|+|.|+|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~--~~~-----~~L~i~~v~~~d~G~Y~C   79 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--QEQ-----GTLQIKNLRISDTGTYTC   79 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE--CTT-----CCEEEESCCTTTCCEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE--cCC-----CEEEEccCCcccCEEEEE
Confidence            4778877788888899999999999999999999999999887632 22222  111     169999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEee
Q psy670          285 NVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~  303 (540)
                      .+.|..|.....+.|.|..
T Consensus        80 ~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           80 VATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EEECSSCCCBCCEEEEEES
T ss_pred             EEEcCCCCEEEEEEEEEec
Confidence            9999999888888888764

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.30  E-value=3.8e-12  Score=94.33  Aligned_cols=78  Identities=18%  Similarity=0.439  Sum_probs=60.4

Q ss_pred             CCeEEeCCceE--EeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          311 PPTFIEKPKIR--SEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       311 ~p~~~~~~~~~--~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      |+.++..+...  .+.+|+.+.|.|.+.+ |.+.+.|++||..+..+.++.+..  ++..  .+|.|.++..+|+|.|+|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~--~~~~--~~L~I~~v~~~D~G~Y~C   78 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLEN--EGPH--RRLVLPATQPSDGGEFQC   78 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEE--ETTE--EEEEESSCCGGGCSEEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEe--cCCe--EEEEeCCCChhhcEEEEE
Confidence            44555444443  3468999999999855 888999999999998887766543  3332  379999999999999999


Q ss_pred             EEEcC
Q psy670          389 NIKNF  393 (540)
Q Consensus       389 ~a~n~  393 (540)
                      .|.|.
T Consensus        79 ~a~n~   83 (91)
T 2lvc_A           79 VAGDE   83 (91)
T ss_dssp             ECSSC
T ss_pred             EEcce
Confidence            99764

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.29  E-value=3e-11  Score=102.51  Aligned_cols=160  Identities=10%  Similarity=0.123  Sum_probs=104.5

Q ss_pred             CccccCCCeEEEEEEEeecCCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLEASPMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...|.+|+++.|+|.+. -+.+ .+.|.-.-..       .....  +.  ....+.|.+++ +|++.|.|.+.......
T Consensus        11 ~~~V~~G~Sv~l~Cs~~-c~~p~~~~~~t~l~~-------~~~~~--g~--~~~~~~ls~vs-~d~~~~~C~~~c~~~~~   77 (196)
T 3bn3_B           11 VAFVERGGSLWLNCSTN-CPRPERGGLETSLRR-------NGTQR--GL--RWLARQLVDIR-EPETQPVCFFRCARRTL   77 (196)
T ss_dssp             EEEEETTEEEEEEEEEC-CSSCSEEEEECSSEE-------EEEEE--ET--TEEEEEEEEEC-SSEECCEEEEEETTEEE
T ss_pred             CcEEcCCCeEEEEEeCC-CCCCCccEEEEccCC-------eeEcc--cc--CceEEEEEEEc-cCCCceEEEEECCCCce
Confidence            35689999999999995 4445 6788532110       00000  01  11258899988 78888999987766667


Q ss_pred             EEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCCe--EEEEeCCEEeeccCceEEEEecCCCeEE
Q psy670          190 NANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRPE--VKWFKADKLVKESSKIKIIVNEQDDTYE  266 (540)
Q Consensus       190 ~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~  266 (540)
                      ...+.|.|+..+.    .+.+.  +....+.+|+.++|.|.+.+ +|...  |.|++++..+......  ..........
T Consensus        78 ~~~v~l~Vy~~P~----~v~i~--~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~--~~~~~~~~~t  149 (196)
T 3bn3_B           78 QARGLIRTFQRPD----RVELM--PLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA--GEPPRARGAV  149 (196)
T ss_dssp             EEECEEEEEBCCC----CCEEC--CCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT--TSCTTCCCEE
T ss_pred             EEEEEEEEecCCC----cCEEc--cCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc--ccccccccee
Confidence            8889999987443    22332  22223668999999999987 66655  8999999988543210  0000111244


Q ss_pred             EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          267 IICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       267 ~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      +++.+.....++...|+|+|.+..+
T Consensus       150 ~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          150 LTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             EEEEEeeeeccCCCeEEEEEEccCC
Confidence            5677776666666699999998765

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.29  E-value=1.5e-11  Score=102.07  Aligned_cols=95  Identities=31%  Similarity=0.533  Sum_probs=79.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+......   ...|.|.+++..|+|.|+|.+
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a  117 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKA  117 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCC---eEEEEECCCChhcCEEEEEEE
Confidence            67777777778889999999999999999999999999999887766655433221   258999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEeec
Q psy670          287 KNEFGESNANLNLNIEAE  304 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~~  304 (540)
                      .|..|.....+.|.|...
T Consensus       118 ~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          118 VNSLGEATCTAELLVETM  135 (154)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EECCCeEEEEEEEEEeCc
Confidence            999999888888888763

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.28  E-value=5.7e-11  Score=91.81  Aligned_cols=96  Identities=23%  Similarity=0.371  Sum_probs=72.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCC---CeEEEEeCCEEeec---cCceEEEE--ecCCCeEEEEEEEeCCCCCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPR---PEVKWFKADKLVKE---SSKIKIIV--NEQDDTYEIICEITDPIGPD  278 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~l~~---~~~~~~~~--~~~~~~~~~~l~i~~~~~~d  278 (540)
                      .|.|...|....+.+|+.++|.|.+.+.|.   +.|.|++++.....   ...+.+..  ..........|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            567777888888999999999999999888   89999998733221   12232221  11223345689999999999


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEEe
Q psy670          279 SGTYRCNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v~  302 (540)
                      +|.|+|.+.|..|.....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999998888888874

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-11  Score=93.97  Aligned_cols=79  Identities=22%  Similarity=0.442  Sum_probs=65.1

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+........        .....|.|.++..+|+|.|+|.+.|..|...
T Consensus        20 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   91 (99)
T 2yr3_A           20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE--------AGVAELHIQDALPEDHGTYTCLAENALGQVS   91 (99)
T ss_dssp             CEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE--------TTEEEEEECSCCTTCCBCEEEEEECSSCEEE
T ss_pred             CCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee--------CCeEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            45688999999999999999999999999988865432211        1124899999999999999999999999887


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        92 ~~~~l~V   98 (99)
T 2yr3_A           92 CSAWVTV   98 (99)
T ss_dssp             EECCEEE
T ss_pred             EEEEEEE
Confidence            7777766

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.28  E-value=1.4e-11  Score=93.88  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=66.0

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+........ ..   ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~---~~L~i~~v~~~D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-QH---WSLIMESVVPSDKGNYTCVVENEYGSI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-GG---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec-Ce---EEEEEccCCcCCCEEEEEEEEeCCCEE
Confidence            34568899999999999999999999999999886543321111100 11   279999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      ...+.|.|
T Consensus        92 ~~~~~l~V   99 (100)
T 3caf_A           92 NHTYHLDV   99 (100)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88887776

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-11  Score=93.42  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=73.8

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.|...+....+.+|+.+.|.|.+  .|.+.+.|+++|..+....++.+....    ....|.|.+++.+|+|.|+|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~----~~~~L~I~~v~~~D~G~Y~C~a   80 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKG----RIHKLVIANALTEDEGDYVFAP   80 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECS----SEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeC----CEEEEEECCCChhhCEEEEEEE
Confidence            6778888888899999999999999  788899999999999877776654432    1247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|.  ....++.|.|..
T Consensus        81 ~N~--~~~~~a~L~V~~   95 (100)
T 2yuz_A           81 DAY--NVTLPAKVHVIS   95 (100)
T ss_dssp             SSS--CCCEEEEEEEEC
T ss_pred             cCC--CeeEEEEEEEeC
Confidence            997  455667777765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.27  E-value=4.6e-12  Score=97.53  Aligned_cols=93  Identities=25%  Similarity=0.537  Sum_probs=78.1

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      ..|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+....    ....|.|.+++.+|+|.|+|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----YKSTFEISSVQASDEGNYSVV   88 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECS----SEEEEEECCCCSSCCSEEEEC
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC----CEEEEEECcCCchhCEEEEEE
Confidence            4677888888899999999999999999999999999999888766665554321    134899999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEe
Q psy670          286 VKNEFGESNANLNLNIE  302 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~  302 (540)
                      +.|..|.....+.|.|.
T Consensus        89 a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           89 VENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CBCSSCBCCEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999988877777763

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.27  E-value=7.5e-11  Score=104.61  Aligned_cols=163  Identities=17%  Similarity=0.259  Sum_probs=97.3

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CE---eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TK---VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|.+.+.+  ...+.|||.  +.   .+.         ...++.+..+   .....++|.|.+++.+|
T Consensus        10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A           10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID---IAKNLAVLKILAPSERD   86 (229)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE---GGGTEEEEEESSCCGGG
T ss_pred             EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEc---CCCCEEEEEECcCCHhH
Confidence            45688999999999997554  357999984  21   111         1234444332   12233589999999999


Q ss_pred             CeEEEEEEEcCC------ce--eEEEEEEEEecCcCCCCCCCeeccCCceeecCCCCeEEEEEEecc-cCCC-eEEEEeC
Q psy670          175 GGNYRCNACNSI------GE--SNANIALNFQGGENGAGFAPSFIEKPRIIPNESGTLIQMKCKCSA-KPRP-EVKWFKA  244 (540)
Q Consensus       175 ~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~  244 (540)
                      +|.|.|.+.+..      +.  -.....|.|...... ..+|.+..      ...+  +.|.|.+.+ +|.+ .|.|+++
T Consensus        87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~-~~~P~v~~------~~~~--~~L~C~~~g~~P~~i~v~W~~~  157 (229)
T 1hxm_A           87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQP-HTKPSVFV------MKNG--TNVACLVKEFYPKDIRINLVSS  157 (229)
T ss_dssp             CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCC-CBCCEEEE------EEET--TEEEEEEESCBSSCCEEEEECS
T ss_pred             CeEEEEEEecCCCcccccchhhcCccEEEEEeccCCC-CcCCcEEE------cCCC--CeEEEEEEEEeCCCEEEEEecC
Confidence            999999998753      11  112346666632110 11333221      1112  489999988 5654 8999999


Q ss_pred             CEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          245 DKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       245 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                       ..+...... ... ..++.+...   .....++.|.|+|.+.+..+
T Consensus       158 -~~~~~~~~~-~~~-~~dg~y~~~---~~~~~~~~~~ytC~V~h~~~  198 (229)
T 1hxm_A          158 -KKITEFDPA-IVI-SPSGKYNAV---KLGKYEDSNSVTCSVQHDNK  198 (229)
T ss_dssp             -SEEEECCCE-EEE-CTTSSEEEE---EEEEETTTTTCEEEEEETTE
T ss_pred             -CEEecCccc-eEE-CCCCcEEEE---ECcccCCCCcEEEEEEeCCC
Confidence             766543221 112 233443322   11223578899999999753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=1e-11  Score=118.89  Aligned_cols=106  Identities=17%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC--ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD--RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +....+.+|+.+.|.|.+.| |.|.+.|++++..+....  ..+... .++     +|.|.+++.+|+|.|+|.|.|..|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG-----DLFFKKVQVEDGGVYTCYAMGETF  325 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT-----EEEESSCCTTSCEEEEEEEECSSC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC-----eEEEeecCcccCEEEEEEEecCCC
Confidence            34567889999999999998 999999999876553322  112222 233     799999999999999999999999


Q ss_pred             eeEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeeeeeeeceeecCCcEEEecCCCeEEEE
Q psy670          396 ELNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLTLSVVPVIREVPKVVTISKKKTVVIE  475 (540)
Q Consensus       396 ~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~g~~~~l~  475 (540)
                      ....++.|.|..                                              .+           .+|+.++|.
T Consensus       326 ~~~~~~~l~V~~----------------------------------------------~~-----------~~g~~~~l~  348 (361)
T 2xot_A          326 NETLSVELKVYN----------------------------------------------FT-----------LHGHHDTLN  348 (361)
T ss_dssp             EEEEEEEEEEES----------------------------------------------SC-----------CC-------
T ss_pred             ccEEEEEEEEEe----------------------------------------------ee-----------ccCCceEEE
Confidence            998888888754                                              22           568889999


Q ss_pred             EEEeeecCCceE
Q psy670          476 CKVMSMYEPSVT  487 (540)
Q Consensus       476 C~v~g~p~~~v~  487 (540)
                      |.+.|.|+|+|+
T Consensus       349 C~~~g~P~P~i~  360 (361)
T 2xot_A          349 AAADPWSHPQFE  360 (361)
T ss_dssp             ------------
T ss_pred             EEeCCCCCCccc
Confidence            999999999864

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.26  E-value=1.6e-11  Score=92.38  Aligned_cols=86  Identities=21%  Similarity=0.424  Sum_probs=71.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+....+..+.    .    ..|.|.+++.+|+|.|+|.+
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~----~~L~i~~~~~~D~G~Y~C~a   79 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----G----EEVEVRDSIPADSGLYACVT   79 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----S----SEEEESSCCGGGSEEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----C----CEEEECCCChHHCEEEEEEe
Confidence            66777777788899999999999999987 799999999888766554332    1    27999999999999999999


Q ss_pred             EcCCCCeeeeEEEEE
Q psy670          287 KNEFGESNANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v  301 (540)
                      .|..|.....+.|.|
T Consensus        80 ~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           80 SSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEEE
Confidence            999888777776665

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.26  E-value=2.4e-11  Score=93.02  Aligned_cols=90  Identities=17%  Similarity=0.350  Sum_probs=69.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ++.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+......+.....++.  ...|.|.+++.+|+|.|+|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a   83 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK--KHILIIEGATKADAAEYSVMT   83 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETT--EEEEEEEEECTTTCSEEEEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCC--EEEEEECCCCcccCEEEEEEE
Confidence            334666677788999999999999977 77899999999999877633222223332  238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|    ...++.|.|..
T Consensus        84 ~n----~~~~~~l~V~~   96 (103)
T 1x44_A           84 TG----GQSSAKLSVDL   96 (103)
T ss_dssp             TT----EEEEEEEEEEC
T ss_pred             CC----CcEEEEEEEeC
Confidence            88    46667777766

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.3e-12  Score=100.13  Aligned_cols=90  Identities=17%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      ++.+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+....++.+... .+.  ...|.|.+++.+|+|.|+|.+
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-~~~--~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ-PGG--YHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCB-TTT--BCCBEECSCCTTTCEEEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEc-CCC--EEEEEEcCCChhhCEEEEEEE
Confidence            45677778888999999999999999999999999999999877665443211 122  127999999999999999994


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                          |....++.|.|..
T Consensus        90 ----g~~~~~~~L~V~~  102 (115)
T 2cr6_A           90 ----GDQRASAALRVTE  102 (115)
T ss_dssp             ----TTEECCEEEEEEC
T ss_pred             ----CCeeEEEEEEEEC
Confidence                5566678888877

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.25  E-value=4.1e-11  Score=89.36  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=70.2

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .++.|...+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+....++.+.....    ...|.|.+++.+|+|.|+|.
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~----~~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGK----KHILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETT----EEEEEECSCCGGGCEEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECC----EEEEEECCCChhhCEEEEEE
Confidence            3677888888889999999999999976 457899999999998777766544321    24799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEe
Q psy670          286 VKNEFGESNANLNLNIE  302 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~  302 (540)
                      |.|.    ..+..|.|.
T Consensus        79 a~n~----~~sa~L~V~   91 (93)
T 1waa_A           79 AANT----KSAANLKVK   91 (93)
T ss_dssp             ETTE----EEEEEEEEE
T ss_pred             ECCC----cEEEEEEEE
Confidence            9874    345566654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.25  E-value=2.3e-10  Score=101.43  Aligned_cols=157  Identities=13%  Similarity=0.208  Sum_probs=93.8

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccC--CCeEEEEECC--EE---cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHEG--KE---LQ---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      ...+....+.+|++++|.|.+.+.+  ...+.|++..  ..   +.         ...++.....  .......|.|.++
T Consensus         5 ~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~--~~~~~~sL~I~~v   82 (229)
T 1hxm_A            5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAKNLAVLKILAP   82 (229)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGGTEEEEEESSC
T ss_pred             EeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEc--CCCCEEEEEECcC
Confidence            3445667789999999999998654  4679999842  11   10         0233333222  1222348999999


Q ss_pred             CCCCCeeEEEEEEcCCe------e--eEEEEEEEEEEEEEEEEeeecCcceeeeeeeeeecccccccccCcccccceeee
Q psy670          379 RKEDTGLYKCNIKNFHG------E--LNANLTLNIEMVRFIKYRVRSNKGIVGKMGLVKTRSYHRDFSVNPQFKKYSVLT  450 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~~g------~--~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (540)
                      +.+|+|.|.|.+.+..+      .  ......|.|....                                        .
T Consensus        83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~----------------------------------------~  122 (229)
T 1hxm_A           83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRS----------------------------------------Q  122 (229)
T ss_dssp             CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCS----------------------------------------C
T ss_pred             CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccC----------------------------------------C
Confidence            99999999999987631      1  1122355554300                                        0


Q ss_pred             eeeeceeecCCcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCC---------CCeEEEE-EEe-cCCeEEEEEE
Q psy670          451 LSVVPVIREVPKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKE---------DNKHVVH-IEQ-VKDVSMNFEL  517 (540)
Q Consensus       451 ~~~~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~---------~~~~~~~-~~~-~~~g~y~c~~  517 (540)
                      ...+|.+....        ..++|.|.+.|. |++ .|+|+++ ..+..         +..+.+. ... .+.|.|+|.+
T Consensus       123 ~~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V  193 (229)
T 1hxm_A          123 PHTKPSVFVMK--------NGTNVACLVKEFYPKDIRINLVSS-KKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSV  193 (229)
T ss_dssp             CCBCCEEEEEE--------ETTEEEEEEESCBSSCCEEEEECS-SEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEE
T ss_pred             CCcCCcEEEcC--------CCCeEEEEEEEEeCCCEEEEEecC-CEEecCccceEECCCCcEEEEECcccCCCCcEEEEE
Confidence            01133333211        124899999985 444 8999999 66532         2233332 222 4678899988


Q ss_pred             eeeee
Q psy670          518 WLGIV  522 (540)
Q Consensus       518 ~~~~~  522 (540)
                      .....
T Consensus       194 ~h~~~  198 (229)
T 1hxm_A          194 QHDNK  198 (229)
T ss_dssp             EETTE
T ss_pred             EeCCC
Confidence            86543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.25  E-value=1.4e-11  Score=94.88  Aligned_cols=91  Identities=21%  Similarity=0.367  Sum_probs=73.3

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+ +.|+++|..+....++.+.  .++.  ...|.|.+++.+|+|.|+|.
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~   81 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITIS--HVGR--FHKLVIDDVRPEDEGDYTFV   81 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEE--EETT--EEEEEESSCCTTTCSCEEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEE--EeCC--EEEEEECCCCcCCCEEEEEE
Confidence            37788888888999999999999999988877 9999999998877766543  2232  23899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.  ....++.|.|..
T Consensus        82 a~n~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           82 PDGY--ALSLSAKLNFLE   97 (106)
T ss_dssp             EETS--CCCCCBCEEEEC
T ss_pred             EccC--CceEEEEEEEEE
Confidence            9998  444555666654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=93.84  Aligned_cols=89  Identities=17%  Similarity=0.394  Sum_probs=72.8

Q ss_pred             CCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       310 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....++.+.  .++.  ...|.|.+++.+|+|.|+|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV--CEGT--MAMLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE--EETT--EEEEEESSCCTTTCSEEEEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE--ECCC--EEEEEECCCCcccCEEEEEE
Confidence            3777888888889999999999999987 78899999999998777665543  2333  34899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|    ...++.|.|..
T Consensus        82 a~n----~~~~~~l~V~~   95 (103)
T 2edf_A           82 VEA----SKSTASLHVEE   95 (103)
T ss_dssp             CSS----CEEEEEEEECC
T ss_pred             Ecc----CCcEEEEEEeC
Confidence            999    35667777765

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.24  E-value=1.3e-11  Score=97.04  Aligned_cols=97  Identities=23%  Similarity=0.545  Sum_probs=70.1

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCc---eEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDR---ISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....   .......++......|.+.+++.+|+|.|+
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~   88 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence            67777778888899999999999999999999999999998875431   111222233222222333366889999999


Q ss_pred             EEEEcCCeeeE-EEEEEEEEE
Q psy670          388 CNIKNFHGELN-ANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~-~~~~l~V~~  407 (540)
                      |.|.|..|... ..+.|.+..
T Consensus        89 C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           89 CVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEeCccceEeeeEEEEhhh
Confidence            99999999764 455666654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.24  E-value=4.6e-11  Score=90.88  Aligned_cols=88  Identities=17%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|+++|..+....++.+.  .++..  ..|.|.+++.+|+|.|+|.
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~--~~~~~--~~L~I~~~~~~D~G~Y~C~   81 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFE--HKGCQ--RILFINNCQMTDDSEYYVT   81 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEE--EETTE--EEEEEEEECTTTCCEEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEE--ecCCE--EEEEEcCCCcCcCEEEEEE
Confidence            6777776665 6788999999999998 788999999999998877766553  23332  2799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |    |....++.|.|..
T Consensus        82 a----g~~~~~~~l~V~~   95 (100)
T 2yuv_A           82 A----GDEKCSTELFVRS   95 (100)
T ss_dssp             E----TTEEEEEEEEECC
T ss_pred             E----CCceEEEEEEEec
Confidence            9    5567778888876

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.23  E-value=7.2e-11  Score=89.44  Aligned_cols=81  Identities=21%  Similarity=0.394  Sum_probs=65.0

Q ss_pred             CCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          317 KPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .+....+.+|+.+.|.|.+. +.|.+.+.|++++.........    ..++     +|.|.+++.+|+|.|+|.|.|..|
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~----~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----DFNG-----ILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE----EETT-----EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee----cCCC-----EEEEeCCChhhCEEEEEEecCCCC
Confidence            34667889999999999998 6899999999975444332211    1122     799999999999999999999999


Q ss_pred             eeEEEEEEEEE
Q psy670          396 ELNANLTLNIE  406 (540)
Q Consensus       396 ~~~~~~~l~V~  406 (540)
                      ....++.|.|.
T Consensus        87 ~~~~~~~l~V~   97 (98)
T 1gl4_B           87 MDQGTATLHVQ   97 (98)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ccccEEEEEEe
Confidence            98888888875

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=9.4e-12  Score=94.96  Aligned_cols=90  Identities=21%  Similarity=0.324  Sum_probs=70.1

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCce--EEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI--SWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+......  ++....++.  ...|.|.++..+|+|.|+|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGK--RHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSS--EEEEECSSCCGGGCSBEEE
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCC--EEEEEECCCChhhCEEEEE
Confidence            67777778888999999999999999988 999999999998776632  222233333  3379999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~~  407 (540)
                      .|.|    ...++.|.|..
T Consensus        85 ~a~n----~~~~~~l~V~~   99 (101)
T 2edk_A           85 ITNG----GQCEAELIVEE   99 (101)
T ss_dssp             ECSS----CEECCBEEEEC
T ss_pred             EEcC----CcEEEEEEEeC
Confidence            9987    33455566654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=94.14  Aligned_cols=88  Identities=17%  Similarity=0.478  Sum_probs=69.8

Q ss_pred             CCeEEeCCce---EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKI---RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~---~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.++..+..   ..+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+..  ++.  ...|.|.+++.+|+|.|+
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~--~~~--~~~L~I~~~~~~D~G~Y~   81 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKM--DGR--KHRLILPEAKVQDSGEFE   81 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEE--ETT--EEEEEESSCCTTTCEEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEe--CCC--EEEEEECCCChhhCEEEE
Confidence            5555555655   678999999999999999988 99999999998777665542  222  238999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|..+    .+.|.|..
T Consensus        82 C~a~n~~~----~~~l~V~~   97 (104)
T 2e6p_A           82 CRTEGVSA----FFGVTVQD   97 (104)
T ss_dssp             EECSSCCC----CEEEEEEC
T ss_pred             EEECCceE----EEEEEEcC
Confidence            99999743    56677765

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=94.76  Aligned_cols=99  Identities=22%  Similarity=0.424  Sum_probs=76.0

Q ss_pred             eeeeEEEEEeeccCCCCCCCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEE
Q psy670          293 SNANLNLNIEAEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR  372 (540)
Q Consensus       293 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (540)
                      ....+.|.|...      +|.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+....++.+.  .++.  ...
T Consensus         7 ~~~~~~l~V~~~------pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~--~~~~--~~~   74 (113)
T 2edh_A            7 GRTSAMLTVRAL------PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLR--QDGA--RCE   74 (113)
T ss_dssp             CCCCCCCCCCCS------CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEE--EETT--EEE
T ss_pred             CcEEEEEEEEcC------CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEE--ECCC--EEE
Confidence            344444555432      5677777778889999999999999764  689999999998877766544  2332  337


Q ss_pred             EEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          373 LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       373 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.+++.+|+|.|+|.|    +....++.|.|..
T Consensus        75 L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~  105 (113)
T 2edh_A           75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRA  105 (113)
T ss_dssp             EEECSCCSTTCEEEEEEE----TTEEEEEEEEECC
T ss_pred             EEECCCChhhCEEEEEEe----CCCCEEEEEEEeC
Confidence            999999999999999999    5667778888876

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.23  E-value=7.7e-11  Score=92.77  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       222 g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      .+...|.|.+.|.|.+.+.|+++|..+....................|.|.+++..|+|.|+|.|.|..|....++.+.|
T Consensus        20 ~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           20 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            36678999999999999999999999987765555444333344568999999999999999999999998888777766


Q ss_pred             ee
Q psy670          302 EA  303 (540)
Q Consensus       302 ~~  303 (540)
                      ..
T Consensus       100 ~~  101 (118)
T 1wwc_A          100 LK  101 (118)
T ss_dssp             SC
T ss_pred             cc
Confidence            55

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=91.42  Aligned_cols=79  Identities=20%  Similarity=0.473  Sum_probs=66.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.++|.|.+.+.| +.+.|+|++..+....+..+..         ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~---------~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECS---------SEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEEC---------CEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence            34678999999999998877 7999999998887666554431         1899999999999999999999999888


Q ss_pred             EEEEEEEec
Q psy670          191 ANIALNFQG  199 (540)
Q Consensus       191 ~~~~l~v~~  199 (540)
                      ..+.|.|..
T Consensus        82 ~~~~l~V~~   90 (99)
T 2cr3_A           82 TYFSVNVSD   90 (99)
T ss_dssp             EEEEECBCS
T ss_pred             EEEEEEEec
Confidence            888888875

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.23  E-value=3.6e-11  Score=90.45  Aligned_cols=87  Identities=18%  Similarity=0.377  Sum_probs=69.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      .+.+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....++.+.  .++.  ...|.|.+++.+|+|.|+|.|
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLA--TEGT--RHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEE--EETT--EEEEEESSCCTTCCSEEEEEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEE--EcCC--EEEEEEcCCCcccCEEEEEEE
Confidence            3556666778889999999999999 8888999999999998877766553  2332  238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~  406 (540)
                          |....++.|.|.
T Consensus        83 ----g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 ----GSSKVKFDLKVI   94 (95)
T ss_dssp             ----TTEEEEEEEEEE
T ss_pred             ----CCceEEEEEEEe
Confidence                445666777764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.7e-11  Score=92.23  Aligned_cols=97  Identities=26%  Similarity=0.455  Sum_probs=74.0

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEeccc---CCCeEEEEeCCEE-eec--cCceEEEE--ecCCCeEEEEEEEeCCCCCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAK---PRPEVKWFKADKL-VKE--SSKIKIIV--NEQDDTYEIICEITDPIGPD  278 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~-l~~--~~~~~~~~--~~~~~~~~~~l~i~~~~~~d  278 (540)
                      .+.|...|..+.+.+|+.++|.|.+.+.   |.|.|.|+|+... +..  ...+.+..  ..........|.|.++...|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            5567777888899999999999999874   7899999997421 111  22333321  22233345689999999999


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          279 SGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      +|.|+|.+.|..|..+..+.|.|..
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            9999999999999988888888875

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.22  E-value=4.4e-11  Score=94.87  Aligned_cols=87  Identities=18%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeCCEeecC-----CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQGTKVIED-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ...+.+|+++.|.|.+.|.  |.+.+.|++++..+..     ........  .........|.|.+++.+|+|.|+|.+.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG--SEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE--TTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC--CceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            3467899999999999884  4568999998874421     11111111  0111234589999999999999999999


Q ss_pred             cCCceeEEEEEEEEec
Q psy670          184 NSIGESNANIALNFQG  199 (540)
Q Consensus       184 ~~~~~~~~~~~l~v~~  199 (540)
                      |..|.....+.|.|.+
T Consensus        95 n~~g~~~~~~~l~V~~  110 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHE  110 (122)
T ss_dssp             CSSCEEEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEEec
Confidence            9999988999999986

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.21  E-value=7.4e-11  Score=87.95  Aligned_cols=83  Identities=19%  Similarity=0.381  Sum_probs=67.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      ++.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....             ..|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~a   69 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCHV   69 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEEE
Confidence            44556667677788999999999999999999999999988765432             17999999999999999999


Q ss_pred             EcCCCCee-eeEEEEEe
Q psy670          287 KNEFGESN-ANLNLNIE  302 (540)
Q Consensus       287 ~~~~~~~~-~~~~l~v~  302 (540)
                      .|..|... ..+.+.|.
T Consensus        70 ~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           70 YNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             ECSSCEEECCCEEEEEC
T ss_pred             EcCCCCEEeeeEEEEEe
Confidence            99988643 44555553

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=93.39  Aligned_cols=82  Identities=22%  Similarity=0.432  Sum_probs=65.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....         .    .|.|.+++.+|+|.|+|.|
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~---------~----~L~i~~v~~~d~G~Y~C~a   76 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------P----VLILPEIGPQDQGTYSCVA   76 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCC---------S----EEEEESCCTTTCEEEECEE
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCC---------C----EEEECCCCcccCEEEEEEE
Confidence            56666677677789999999999999999999999999988765422         1    7999999999999999999


Q ss_pred             EcCCeeeE--EEEEEEE
Q psy670          391 KNFHGELN--ANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~~--~~~~l~V  405 (540)
                      .|..+...  ..+.|.|
T Consensus        77 ~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           77 THSSHGPQESRAVSISI   93 (96)
T ss_dssp             CCSSCCCEECCCEEEEE
T ss_pred             EeCCCCcEEEEEEEEEE
Confidence            99765543  3444444

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=7e-11  Score=92.24  Aligned_cols=78  Identities=23%  Similarity=0.446  Sum_probs=63.3

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+.+|+.+.|.|.+. .|.+.+.|+++|..+....++.+.  .++.  ...|.|.+++.+|+|.|+|.|.|    ...+
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~a~n----~~~~   93 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQ--KEDT--VRRLVLPAVQLEDSGEYLCEIDD----ESAS   93 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEE--ECSS--EEEEEESSCCTTTCEEEEEESSS----CEEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEE--ECCC--EEEEEECCCCcccCEEEEEEEec----CcEE
Confidence            5677999999999995 788899999999999877766543  2222  23899999999999999999988    4557


Q ss_pred             EEEEEEE
Q psy670          401 LTLNIEM  407 (540)
Q Consensus       401 ~~l~V~~  407 (540)
                      +.|.|..
T Consensus        94 ~~l~V~~  100 (113)
T 2cpc_A           94 FTVTVTE  100 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7777776

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2e-11  Score=93.47  Aligned_cols=89  Identities=17%  Similarity=0.287  Sum_probs=71.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCC-CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      ++.+...+....+.+|+.++|.|.+.+.|. +.+.|+++|..+....++.+.  .++.  ..+|.|.+++.+|+|.|+|.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~--~~~~--~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT--RQGR--KYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEE--EETT--EEEEEECSCCTTTCSCEEEE
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEE--EcCC--EEEEEECCCCHHHCEEEEEE
Confidence            556666778889999999999999988775 489999999999877766543  2333  23899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIEM  407 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|    ...++.|.|..
T Consensus        84 a~~----~~~~a~L~V~~   97 (104)
T 2eny_A           84 VRG----LTSKASLIVRE   97 (104)
T ss_dssp             ETT----EEEEECEEEEC
T ss_pred             ECC----eeEEEEEEEeC
Confidence            854    45677888876

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.19  E-value=4.9e-11  Score=91.19  Aligned_cols=90  Identities=18%  Similarity=0.346  Sum_probs=67.9

Q ss_pred             CCCCCeEEeCCce-EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC-CceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          308 EGDPPTFIEKPKI-RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT-DRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       308 ~~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      ...+|.|+..+.. ..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+ .++.+.  .++.  ...|.|.+++.+|+|.
T Consensus        12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~--~~~~--~~~L~I~~v~~~D~G~   86 (104)
T 1pd6_A           12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE--SIGA--KRTLTISQCSLADDAA   86 (104)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE--EETT--EEEEEECSCSSSSCEE
T ss_pred             ccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEE--ecCC--EEEEEECCCCcccCEE
Confidence            3446666655544 779999999999999 7888999999999998776 555443  2333  3489999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEE
Q psy670          386 YKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       386 Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      |+|.|.+    ...+..|.|.
T Consensus        87 Y~C~a~~----~~~~~~l~V~  103 (104)
T 1pd6_A           87 YQCVVGG----EKCSTELFVK  103 (104)
T ss_dssp             EEEEETT----EEECCEEEEE
T ss_pred             EEEEECC----CcEEEEEEEe
Confidence            9999943    4445556554

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.19  E-value=2.7e-10  Score=88.63  Aligned_cols=95  Identities=20%  Similarity=0.399  Sum_probs=71.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEccCCCceEEE-EEec---CCeeEEEEEEcCCCCCCCe
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGKELQQTDRISWN-VTLK---GDKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~~~~~~~-~~~~---~~~~~~~L~i~~~~~~d~G  384 (540)
                      +|.+...+....+.+|+.++|.|.+.+.  +.+.+.|++++..+......... ....   ......+|.|.+++.+|+|
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   89 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG   89 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence            7788888888889999999999999965  45799999999988654321111 0001   0012348999999999999


Q ss_pred             eEEEEEEcCCee-eEEEEEEEE
Q psy670          385 LYKCNIKNFHGE-LNANLTLNI  405 (540)
Q Consensus       385 ~Y~C~a~n~~g~-~~~~~~l~V  405 (540)
                      .|+|.|.|..|. .+..+.|.|
T Consensus        90 ~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           90 XYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEeCCCcEEEeEEEEEe
Confidence            999999999998 456777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-14
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	0.002
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-12
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-12
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-09
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	8e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.002
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-11
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-09
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	7e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-09
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	9e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	6e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	4e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	8e-09
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.001
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	6e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	6e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	5e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	8e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	6e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	1e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	0.001
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	9e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-07
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	7e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	2e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	4e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.002
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	8e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	9e-06
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	8e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	6e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	7e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	7e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	7e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	7e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	7e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	9e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.003
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	1e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-04
d1vcaa1	109	b.1.1.3 (A:91-199) Vascular cell adhesion molecule	2e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	7e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	7e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.002
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.003

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 312 PTFIEKPKIRSE----QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
           P +    K+            V   C     PMP + W   GKE +Q  RI         
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ- 60

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             H  L ++     D G Y C ++N +G +N    L++
Sbjct: 61  --HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 1e-13
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 207 APSFIEKPRIIPN----ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           AP +    ++        +   ++ +C     P P ++W K  K  K+  +I        
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
               I+  +      D G Y C V+NE+G  N   +L++
Sbjct: 61  HWSLIMESVVP---SDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 104 APRFPKKPTIHQD------GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           AP +     + +        + +   C    +PMP + W +  K  +   RI   K    
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
             +    L + +    D GNY C   N  G  N    L+
Sbjct: 61  HWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
            L +++V  SD G Y  + +N+ G  + T +L+
Sbjct: 62 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P  I+ P+ +  + G+ V +  KV         W    K++Q+    S ++ ++  +   
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE----SEHMKVENSENGS 56

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           +L +   R+E  G Y   ++N  G   A + L +
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P  I+ P      +G  +++  K +        W K  K ++ES  +K+  +E      I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAE-PEGDP 311
           +    +      G Y   V+N+ G   A +NL +  + + P G P
Sbjct: 61  LAARQE----HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTP 101

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
           P+  + P     + G+ + +   +  +      W +  K I+++  +K+     G     
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS---- 56

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            +L I    ++  G Y     N +G   A + L    
Sbjct: 57  -KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 57 VLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           LTI   ++   G Y ++ +NK G   + VNL 
Sbjct: 57 KLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 455 PVIREVPKVVTISKKKTVVIECKVMSMYEPSVTWMKEKNTVKEDNKHVVHIEQ 507
           P I + P+   +   ++V +  KV      + TWMK +  ++E     V   +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 53

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 303 AEAEPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV 362
           AE +P    P F +         G     +CKV+  P PE++WF +   ++++     + 
Sbjct: 1   AEEKPHV-KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY 59

Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             +G+      EV     +D   Y C   N  GE      L +E
Sbjct: 60  DEEGNCSLTISEV---CGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P F +    +    G+  +  CK    P PEV WFK D  VKES   +I  +E+ +   
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
            I E+      D   Y C   N  GE+     L +E 
Sbjct: 68  TISEVCGD---DDAKYTCKAVNSLGEATCTAELLVET 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 104 APRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            P F K        +G     +C +E  P P+++W++    ++++   ++     G  + 
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
                I+    DD   Y C A NS+GE+     L  +
Sbjct: 68  T----ISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 59 TIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          TI  V   D  +Y   A N  GE + T  L 
Sbjct: 68 TISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 311 PPTFIEKP-KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
            P + +KP K+   + G+ V + CKV   P P +VW H  K L        +        
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-------- 53

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
              L +K  +  D G Y C   N HG+      + +
Sbjct: 54  -SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 104 APRF---PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           AP++   P+K  + + G  + + C +   P P+++W    K +                 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS------- 54

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
               L I      D G Y C A N  G+      + 
Sbjct: 55  ---GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 207 APSFIEKP-RIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
           AP + +KP ++I  + G  + + CK +  P P V W    K +                 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT---------VT 52

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           +    I      D G Y C   NE G+      + +
Sbjct: 53  DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          L IK V+  D G Y   A N++G+      + 
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P FI KP       G+     C+V A   P + W  + +EL+Q+ +       + +    
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK----RYNGNDY 57

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            L +   + +D G Y    KN +G     + LN+ 
Sbjct: 58  GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 92

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.2 bits (137), Expect = 5e-11
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P FI KP       G      C+  A   P V W K D+ +K+S K     N  D     
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG--- 58

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
              I    G D G Y    KN +G     + LN+   +EP
Sbjct: 59  -LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
           PRF  KP  T   +G      C + AS  P + W++  + ++ + +              
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY---- 57

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
             L IN    DD G Y   A NS G     + LN   
Sbjct: 58  -GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 18/35 (51%)

Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
          LTI  V+  D GEY V AKN  G     V LN + 
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (143), Expect = 8e-12
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 311 PPTFIEKPKIRSE--QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           PPT   +  I +     G+ V + C     P P + W  +G+ ++  +          D 
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
               L +++  K D   Y C  +N  GE +A++ L +
Sbjct: 63  SE--LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 208 PSFIEKPRIIPN--ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
           P+   +  I+      G  + + C     P P + W K  + ++   +        DD+ 
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 266 EIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           E+     D    D   Y C  +N+ GE +A+++L + A
Sbjct: 64  ELTIRNVDK--NDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 105 PRFPKKPTIH----QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           P    + +I       G  + + C  +  P P + W +  + IE+              +
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
               L I N  K+D   Y C A N  GE +A+I L 
Sbjct: 64  ---ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 56 AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          + LTI+NV K+D  EY  IA+NK GE  ++++L 
Sbjct: 63 SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P   E+ + ++   G       +V  KP PE  W+  G +++++DRI W      +   
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP---EDNV 60

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             L ++D   ED+        N  GE +++  L ++
Sbjct: 61  CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           AP   E+ +      G+    + +   KP PE +W+K    ++ S +I     E +    
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           +I ++T     DS +      N  GE++++  L ++A
Sbjct: 64  VIRDVTG---EDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 103 KAPRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           +AP+  ++        G        +   P P+  WY+    IE + RI         + 
Sbjct: 3   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----ED 58

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQG 199
            +  L I + T +D  +    A N  GE++++  L  Q 
Sbjct: 59  NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 59 TIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
           I++V   DS    V A N  GE SS   L 
Sbjct: 64 VIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.0 bits (139), Expect = 2e-11
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
           P +++         G  +   C    KP P + W  +G+ L   +RI             
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV--------SGG 53

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            L       ED+G+Y+C  +N HG + A+  L ++
Sbjct: 54  ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P +++       + G+ ++  C  S KPRP V+W +  + +            + +    
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--------QNRIEVSGG 53

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
               +  +  DSG Y+C  +N+ G   A+  L ++A
Sbjct: 54  ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 105 PRFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
           P +      T    G  L   CV    P P + W +  + +    RI++S          
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG-------- 53

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
             L  +    +D G Y+C A N  G   A+  L  Q
Sbjct: 54  -ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 58 LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
          L    +   DSG Y+ +A+NK+G   ++  L 
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 3e-11
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRL 373
            + KP+  +   G+     C    +P+P + W  +G+ L  + R          KY    
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT----TKYKSTF 57

Query: 374 EVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
           E+   +  D G Y   ++N  G+  A  TL I+
Sbjct: 58  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-09
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIIC 269
            + KPR +    G   +  C    +P P V W +  +++  S++           Y+   
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH----QVTTTKYKSTF 57

Query: 270 EITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302
           EI+     D G Y   V+N  G+  A   L I+
Sbjct: 58  EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 106 RFPKKP--TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163
           R   KP      +G+     C  +  P+P + W +  +V+  + R +++        Y  
Sbjct: 1   RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKS 55

Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
             EI++    D GNY     NS G+  A   L  Q
Sbjct: 56  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 59 TIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
           I +VQ SD G Y V+ +N  G+  +   L   +
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
            P      P   S   G  V   CKV +   P I W    ++            LK  K 
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 370 HIR---------LEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                       L +++   ED G Y C   N  G    +  L +
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 107 FPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDT--------GRIKMSKKSIGK 158
            P   +    G  +   C + +   P I W +  +              ++  +      
Sbjct: 11  LPANASTVV-GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTT 69

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
           D  +  L I N T +D G Y C A NSIG S  +  L 
Sbjct: 70  DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 16/106 (15%)

Query: 212 EKPRIIPN-------ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
            +P +            G  ++  CK  +  +P ++W K  +          +   +   
Sbjct: 3   HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 265 YEIIC---------EITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
              +           I +    D+G Y C   N  G S  +  L +
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 13  EGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY---YLAVLTIKNVQKSDSG 69
             +    I+  +  ++   GS           +++          + VL I+NV   D+G
Sbjct: 30  YSDAQPHIQ--WIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG 87

Query: 70  EYKVIAKNKNGEGSSTVNLN 89
           EY  +A N  G    +  L 
Sbjct: 88  EYTCLAGNSIGISFHSAWLT 107

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK-Y 369
            PT      + S        +   VK  P P + WF+ G  L ++  I   + +     Y
Sbjct: 4   APTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           H  L++ +P   + G Y    KN +G+    ++ + 
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 17/83 (20%), Positives = 35/83 (42%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
                +   ++ +P P + W+    ++ ++  I           Y   L+++NPT  + G
Sbjct: 16  DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 177 NYRCNACNSIGESNANIALNFQG 199
           +Y   A N  G+    I+ +F G
Sbjct: 76  DYTLIAKNEYGKDEKQISAHFMG 98

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT- 264
           FAP+      +    S     +       P+P ++WF    ++ ES  I   ++  + T 
Sbjct: 3   FAPTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
           Y    ++ +P   ++G Y    KNE+G+    ++ + 
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTL---KGDKYHIRLEVKDPRKED 382
                +   V  +P P + W   G  L +T  I              H  L +  P   +
Sbjct: 15  MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 74

Query: 383 TGLYKCNIKNFHGELNANLTLNI 405
            G Y     N  G+ +A++    
Sbjct: 75  NGNYTLLAANPFGQASASIMAAF 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM--SKKSIGKDTYLLRLEINNPTK 172
            +     +   ++  P P + W     V+ +T  I     + +  +      L +N PT 
Sbjct: 13  VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72

Query: 173 DDGGNYRCNACNSIGESNANIALNFQG 199
            + GNY   A N  G+++A+I   F  
Sbjct: 73  VNNGNYTLLAANPFGQASASIMAAFMD 99

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 9e-07
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 220 ESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI---ICEITDPIG 276
                  +      +P P ++W     ++ E+S I     E      +      +  P  
Sbjct: 13  VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72

Query: 277 PDSGTYRCNVKNEFGESNANLNLNIEA---EAEPE 308
            ++G Y     N FG+++A++         E  PE
Sbjct: 73  VNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 10 YTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSG 69
          ++++G+P   +   F  ++     L + S   +  L    +       L +      ++G
Sbjct: 22 FSVDGQPAPSLRWLFNGSV-----LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76

Query: 70 EYKVIAKNKNGEGSSTVNLNFSE 92
           Y ++A N  G+ S+++   F +
Sbjct: 77 NYTLLAANPFGQASASIMAAFMD 99

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           PP  +    +   +      +E  V+  P P + W H G+ L+++  I      +G+   
Sbjct: 5   PPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
             L    P   + G Y    KN  G  N  +  + 
Sbjct: 62  GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 214 PRII---PNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICE 270
           PR++     E      ++      P P + W    + ++ES  I +   ++ +  E    
Sbjct: 6   PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65

Query: 271 ITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGD 310
              P   ++G Y    KN  G +N  +N +   E  P  +
Sbjct: 66  FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDE 105

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD 174
           +      +E V+  +P P + W    + + ++  I +     G +     L  N PT  +
Sbjct: 15  ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EISEGCLLFNKPTHYN 73

Query: 175 GGNYRCNACNSIGESNANIALNFQG 199
            GNY   A N +G +N  I  +F  
Sbjct: 74  NGNYTLIAKNPLGTANQTINGHFLK 98

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 206 FAPSFIEKPRIIPNESGTL---IQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQD 262
           + P F E+P       G+    + + C+  A P    +W      +K     +  +    
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--- 59

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGE---SNANLN 298
                +         D+G+Y+C   N  G      A+L 
Sbjct: 60  --AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 311 PPTFIEKPK---IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGD 367
            P F E+P           + V + C+ +A P     W   G EL+      + +     
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELN-ANLTLN 404
                +     + +D G Y+C   N  G +     +L 
Sbjct: 60  -AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 104 APRFPKKPTIH-----QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
            P F ++P           + + + C   A+P     W      ++     +       +
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY------R 57

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA-LNF 197
                 +  N     D G+Y+C A N+ G   +  A L F
Sbjct: 58  LVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKELQQTDR-----ISWNV 362
              F+ +P+      G  +    +V    +   P + WF        +       +  + 
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 363 TLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                 Y   L + D +   TG Y+C +        +N  L + 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKESS-----KIKIIV 258
              F+ +P+      G  I    + +       P VKWFK   +   S      ++    
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 259 NEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           +     Y     ITD     +G YRC V  +     +N NL +  
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPM---PDIIWYQGTKVIEDTGRIKMS----KK 154
              F  +P       G  +     +  + +   P + W++G  V   +   +        
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 155 SIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
                 YL  L I +      G YRC          +N  L   
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 54  YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
           YL  L I + Q + +G Y+     K+    S  NL   E
Sbjct: 70  YLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKY 369
            P+   K P       G++V +EC     P+P+I W             S  +       
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL------- 56

Query: 370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
              L +++   ED G Y+C  +N  G       + I 
Sbjct: 57  ---LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLR 164
            +FP        G ++ +EC    +P+P I W +                          
Sbjct: 9   AKFPADTYALT-GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL----------- 56

Query: 165 LEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
           L I N   +D G Y C A N  G       +   
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 11/99 (11%)

Query: 206 FAPSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDT 264
           +APS   K P      +G ++ ++C     P P++KW K D            +    + 
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV 62

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                        D GTY C  +N  G       + I A
Sbjct: 63  DF----------EDEGTYECEAENIKGRDTYQGRIIIHA 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 53 YYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
              +L I+NV   D G Y+  A+N  G  +    + 
Sbjct: 52 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (120), Expect = 8e-09
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHI 371
             F   P  +  + G+  V+ C V +   P I+W H+G+++     + +         + 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----VLSNN 56

Query: 372 RLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
            L+++  +K D G Y+C  +           + +
Sbjct: 57  YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
             F   P     + G    + C   +   P + W    + V     ++ IV         
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-----SNN 56

Query: 268 ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
             +I      D GTYRC  +          ++ +
Sbjct: 57  YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 105 PRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYL 162
             F   PT    ++G+  V+ C + +S  P IIW    + +     ++            
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI------VLSN 55

Query: 163 LRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
             L+I    K D G YRC              + 
Sbjct: 56  NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEI 167
           P K T+ Q G  + + C +E    PDI W    K       +      + +  ++  L +
Sbjct: 3   PVKLTVSQ-GQPVKLNCSVEGMEEPDIQWV---KDGAVVQNLDQLYIPVSEQHWIGFLSL 58

Query: 168 NNPTKDDGGNYRCNACNSIGES-NANIALNFQG 199
            +  + D G Y C   +      +  + L  +G
Sbjct: 59  KSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL 385
           G+ V + C V+    P+I W  +G  +Q  D++   V+ +     +   +K   + D G 
Sbjct: 11  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL--SLKSVERSDAGR 68

Query: 386 YKCNIKNFHGE-LNANLTLNIE 406
           Y C +++     ++  + L +E
Sbjct: 69  YWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 8e-07
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITD 273
           P  +    G  +++ C       P+++W K   +V+   ++ I V+EQ         +  
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG--FLSLKS 60

Query: 274 PIGPDSGTYRCNVKNEFGES-NANLNLNIE 302
               D+G Y C V++      +  + L +E
Sbjct: 61  VERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 54 YLAVLTIKNVQKSDSGEYKVIAKNKNGEG-SSTVNLN 89
          ++  L++K+V++SD+G Y    ++      S  V L 
Sbjct: 52 WIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 88

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 30/126 (23%)

Query: 310 DPPTFIEKPKIRSEQG-----GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI------ 358
           +PP        R         G  + ++  +   P P ++W     +  +          
Sbjct: 3   EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 359 -------------------SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA 399
                                 V ++  K      V+   KED G+Y   +KN  GE   
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV 122

Query: 400 NLTLNI 405
           NLT+ +
Sbjct: 123 NLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 24/117 (20%)

Query: 104 APRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKM------------ 151
            P       +   G+ L ++  +   P P +IW +                         
Sbjct: 11  CPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDE 70

Query: 152 ------------SKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                        +  +          +    K+D G Y     N +GE   N+ + 
Sbjct: 71  WVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 3   FPKELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLY-----YLAV 57
            P     +        +  A    +                 L + + R+        ++
Sbjct: 36  DPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 95

Query: 58  LTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLN 89
            T++  +K D G Y V  KN  GE    + + 
Sbjct: 96  FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 25/115 (21%)

Query: 212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI---- 267
             P  I   +G  +++    S  P P V W KA     ++         +D         
Sbjct: 14  RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73

Query: 268 ---------------------ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
                                I  +      D G Y   VKN  GE   NL + +
Sbjct: 74  DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRIS---WNVTLKG 366
           PP+        S   G   V+ C  +   P  E  WF +G  +    + +    N +   
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
           +     L        DTG Y C  +N +G    +  + +E V
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-08
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 108 PKKPTIHQD-----GDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMS--KKSIGKD 159
           P KPT++       G+  V+ C   + SP  +  W++   V+    +   +    S   +
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGE 201
                L  +  +  D G Y C A N  G    + A+  +  E
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 4/100 (4%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCK-CSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
           PS            G    + C      P  E  WFK   ++  + K     +       
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 267 I---ICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
                         D+G Y C  +N +G    +  + +EA
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 310 DPPTFIEKPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHEGKEL-QQTDRISWNVTLKGD 367
           D   +I++    S   G    +EC VK     P + W         + +    +   + +
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 368 KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN-LTLNIEMVR 409
                L  +     D G Y+C+       + ++  TL +  V+
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 104 APRFPKKPTIH--QDGDLLVMECVLEASPM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
              + K+ + H    GD   +EC ++     P + W +           + +     K+ 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
               L       +D G+YRC+A        ++  
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESHST 96

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFK-ADKLVKESSKIKIIVNEQDDT 264
              +I++       +G   +++C       RP V W K       +    +    E+ + 
Sbjct: 3   VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62

Query: 265 YEIICEITDPIGPDSGTYRCNVKNEFGESNAN 296
              I      +  D+G+YRC+   +     ++
Sbjct: 63  SFFILHFEPVLPNDNGSYRCSANFQSNLIESH 94

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 105 PRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL- 163
           P      ++      ++     + SP  +  W++    +      K         T    
Sbjct: 6   PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPK 65

Query: 164 --RLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
              L  +  T  D G Y C A N  G +  + A +  
Sbjct: 66  SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISW----NVTLK 365
           PP+        S   G   V+ C      P  E  WF +G  +   D        N +  
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
            D     L        D+G Y C  +N +G    +   +++
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQD---- 262
           PS            G    + C      P  E  WFK    +  +   K           
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 263 DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
           D              DSG Y C  +N +G +  +   +++A
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 6   ELKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYL--AVLTIKNV 63
            L     +G P  +         +  G  +  +D   +    + S         L    V
Sbjct: 21  VLTCSEHDGSPPSEYSW------FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 74

Query: 64  QKSDSGEYKVIAKNKNGEGSSTVNLNFSEEDGKLKVPG 101
              DSGEY   A+N  G    +   +    +  L V G
Sbjct: 75  TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE--LNVGG 110

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 311 PPT-FIEKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
           P    +E+ + +S + G  V   C  K+  P   +VW         +  + +N       
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI----- 55

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
               L +++ +  D G Y C   N         TL+++
Sbjct: 56  ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 108 PKKPTIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
            ++    + G  +   C  ++ SP   ++W +       +  +           +   L 
Sbjct: 8   EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------DFNGILT 57

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
           I N    D G Y C   N          L+ Q
Sbjct: 58  IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 314 FIEKPKIRSEQGGKLVVMECKVKAKPM---PEIVWFHEGKEL-----QQTDRISWNVTLK 365
           FIEKP+  + + G+ +    KVKA+ +   P I WF            +  ++       
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
              Y   +++   +    G Y+C +       + +  L + 
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 210 FIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKESSKIKIIVNEQD---- 262
           FIEKP+    + G  I    K  A+    +P +KWFK   +   S   K +  ++     
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 263 -DTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPP 312
              Y    +I       +G YRC V  +    + + +L +    E  G  P
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH---ESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-06
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 107 FPKKPTIH--QDGDLLVMECVLEASPM---PDIIWYQGTKVIEDTGRIKMSKKS----IG 157
           F +KP     + G+ +     ++A  +   P I W++G  +   +   K  +        
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
              Y   ++I     +  GNYRC         + +  L 
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 54  YLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
           Y   + I   + + +G Y+     K+   S + +L   E
Sbjct: 66  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 104

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 3/93 (3%)

Query: 103 KAPRFPK-KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           + P F + +      G     +C      +     +     + D        K      +
Sbjct: 1   RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL--KEIKVTSSRRF 58

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
           +    + N TK D G YRC      G   +N A
Sbjct: 59  IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 91

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P F+ + +      G+    +C    + +     + +G +++              ++ 
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-VTSSRRFI 59

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNAN 400
               V +  K D G Y+C I+   G   +N
Sbjct: 60  ASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 53 YYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSST 85
           ++A   + N  K D+G+Y+ + + + G G S 
Sbjct: 57 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 103 KAPRFPKKPT--IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           K P    +P   + ++ +  V+EC++E +       ++     +D       + +     
Sbjct: 1   KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWK-----KDGKSYNWQEHNAALRK 55

Query: 161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIA 194
               L    P   D G+Y+C A    G +++ + 
Sbjct: 56  DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVI 89

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P   ++P     +     V+EC ++         + +  +       +        K  
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA----ALRKDE 57

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE 396
             L    P+  D G Y+C  +   G 
Sbjct: 58  GSLVFLRPQASDEGHYQCFAETPAGV 83

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P   ++P  +         ++C      +     +K D       +    + + + +  
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL- 60

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNAN 296
                  P   D G Y+C  +   G +++ 
Sbjct: 61  ---VFLRPQASDEGHYQCFAETPAGVASSR 87

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            P  +   +    + G    +E      P P   W            ++  + +      
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG----DSGAALAPELLVDAKSST 57

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
             +     ++ D+G YK  +KN  GE  A   + ++
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  +   R I  ++G    ++      P P   W          + +   +     +  
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV----GDSGAALAPELLVDAKSST 57

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIE 302
                      DSG Y+  VKNE GE  A   + ++
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 104 APRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
            P+     +    + G    +E     +P P   W  G         + +        + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-----KSS 56

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
              +   +  + D GNY+    N +GE  A   +  Q
Sbjct: 57  TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 308 EGDPPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365
           E     F +K  P  +  +G K + +  ++ A    E+ W   G+E+Q +         +
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHK-IRLTVEL-ADHDAEVKWLKNGQEIQMSG---SKYIFE 56

Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
                  L +      D   Y+C +          L 
Sbjct: 57  SIGAKRTLTISQCSLADDAAYQCVVGGEKCS--TELF 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 103 KAPRFPKK--PTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKD 159
           K+  F KK  P      G  + +   L A    ++ W +         ++  SK      
Sbjct: 4   KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLK----NGQEIQMSGSKYIFESI 58

Query: 160 TYLLRLEINNPTKDDGGNYRCNACNSIGESN 190
                L I+  +  D   Y+C        + 
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGEKCSTE 89

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 207 APSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           + +F +K    P      G  I++  + +     EVKW K  +   E          +  
Sbjct: 5   STAFQKKLE--PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQ---EIQMSGSKYIFESI 58

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANL 297
             +    I+     D   Y+C V  E  + +  L
Sbjct: 59  GAKRTLTISQCSLADDAAYQCVVGGE--KCSTEL 90

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN---VTLKGD 367
           PP             G+  ++ CK ++ P      +++  + +    ++ +     +   
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 368 KYHIRLEVKDPRKED-TGLYKCNIKNFHGELNANLTLNI 405
           +    L +++   E   G Y+CN  +  G   A +TL +
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 105 PRFPKKPTIH--QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMS--KKSIGKDT 160
           PR     +     +G+  ++ C  E+ P      +      ED   +  S  +  +    
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 161 YLLRLEINNPT-KDDGGNYRCNACNSIGESNANIALN 196
               L I N   + D G YRCN  +S G   A I L 
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEV------KWFKADKLVKESSKIKIIVNEQ 261
           P             G    + CK  + P             +   L+  S     + + Q
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 262 DDTYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNI 301
             +   I  +      D G YRCN  +  G   A + L +
Sbjct: 63  GRSELHIENLNME--ADPGQYRCNGTSSKGSDQAIITLRV 100

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 104 APRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163
            P++  K  + + GD+ ++ C+  ++PM    ++   K  +D       + +    T   
Sbjct: 5   VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF---KNGKDVNGNPEDRITRHNRTSGK 61

Query: 164 RLEINNPTKDDGGNYRCNACNSIGESNANIA 194
           RL       +D G Y C   N +G+   +  
Sbjct: 62  RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 92

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 308 EGDP-PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKG 366
           +G+P P ++ K  +     G + ++ C   + PM    +F  GK           +T   
Sbjct: 1   KGEPVPQYVSKDMMAKA--GDVTMIYCMYGSNPMGYPNYFKNGK--DVNGNPEDRITRHN 56

Query: 367 DKYHIRLEVKDPRKEDTGLYKCNIKNFHGE 396
                RL  K    ED G+Y C + N  G+
Sbjct: 57  RTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 86

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P ++ K  +   ++G +  + C   + P     +FK  K V  + + +I  + +     
Sbjct: 5   VPQYVSKDMMA--KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 62

Query: 267 IICEITDPIGPDSGTYRCNVKNEFGESNAN-LNLNI 301
           ++ + T P   D G Y C V N  G+   + L L +
Sbjct: 63  LLFKTTLP--EDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 313 TFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIR 372
              ++ +  +   G+ V +EC+V ++    + WF  G+E+    +      ++ +     
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPK--SRYRIRVEGKKHI 58

Query: 373 LEVKDPRKEDTGLYKCNIKNFHGELNANLT 402
           L ++   K D   Y            A L+
Sbjct: 59  LIIEGATKADAAEYSVMTTGGQSS--AKLS 86

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG 176
           G+ + +EC + +    ++ W++  + I    + +     I  +     L I   TK D  
Sbjct: 15  GERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAA 70

Query: 177 NYRCNACNSIGESNANI 193
            Y          +  ++
Sbjct: 71  EYSVMTTGGQSSAKLSV 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 222 GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGT 281
           G  ++++C+ S +    VKWFK  + +    K +  +  + +  + I  I      D+  
Sbjct: 15  GERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRI--RVEGKKHILIIEGATKADAAE 71

Query: 282 YRCNVKNEFGESNANLN 298
           Y         +S+A L+
Sbjct: 72  YSVMTTGG--QSSAKLS 86

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-06
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 11/102 (10%)

Query: 105 PRF--PKKPTIH-QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
           P    P   T+    G  + + C +         W     VI++   +        ++  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 162 LL-------RLEINNPTK-DDGGNYRCNACNSIGESNANIAL 195
                     L I+          + C A N+ G   A I L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 10/102 (9%)

Query: 312 PTFIEKPKIRSE-QGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P  +       E   G  + + C V  +      W   G  + + D +        +   
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 371 I--------RLEVKDPRKEDTG-LYKCNIKNFHGELNANLTL 403
                     L + +         + C  KN HG   A + L
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 213 KPRII--PNES-----GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTY 265
           +P I+   NE+     G+ IQ+ C  + +      W     ++ E   +        +  
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 266 EIIC--------EITDPIGPDSGT-YRCNVKNEFGESNANLNL 299
                        I++         + C  KN  G   A + L
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 9e-06
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 19/100 (19%)

Query: 206 FAPSFIEK--PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDD 263
           + P   E+  P        +     C+    P PE+K  K                    
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-----------------DGT 43

Query: 264 TYEIICEITDPIGPDSGTYRCNVKNEFGESNANLNLNIEA 303
               I E         GTY C  ++  GE    + +N+ +
Sbjct: 44  FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 19/98 (19%)

Query: 311 PPTFIEK--PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDK 368
            P   E+  P   +          C+    P+PE+    +G                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------- 54

Query: 369 YHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE 406
                      ++  G Y C  ++  GE+   +T+N+ 
Sbjct: 55  ----------TRDLEGTYLCRARSTQGEVTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 24/98 (24%)

Query: 104 APRF-----PKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
            PR      P   T  +        C    +P+P++   +        G           
Sbjct: 2   GPRLDERDCPGNWTWPE-NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES--------- 51

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                       T+D  G Y C A ++ GE    + +N
Sbjct: 52  ---------VTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 103 KAPRF--PKKPTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVIEDTGRIKMSKKSIGK 158
             P      +      G+   ++C + ++P PD I +      +   T      +    +
Sbjct: 5   NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 159 DTYLLRLEINNPTKD-DGGNYRCNACNSIGESNANIALNFQGGE 201
           +  +  L I+N  +      Y C A NS G     I L  QG E
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKEL---QQTDRISWNVTLKGDK 368
           P  I   + +    G+   ++C +++ P P+ + +   + +     + R +       + 
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 369 YHIRLEVKDPRKE-DTGLYKCNIKNFHGELNANLTLNIE 406
               L + +  +     +Y C   N  G     + L  +
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 105

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-05
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 4/105 (3%)

Query: 207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYE 266
            P  I   +      G   Q+KC   + P P+   +   + V ES        E   T E
Sbjct: 6   GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 267 IIC---EITDPIGP-DSGTYRCNVKNEFGESNANLNLNIEAEAEP 307
            +     I++ +       Y C   N FG     + L  +     
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 319 KIRSEQGGKLV---VMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEV 375
           K+     G LV   +   K +   +P++ W+ + K L   +               RL V
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-------VKDRLIV 62

Query: 376 KDPRKEDTGLYKCNIKNFHGELNANLTLNIEMV 408
            +  ++  G Y C+    +      +T  IE +
Sbjct: 63  MNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 95

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 105 PRFPKKPTIHQDGDL---LVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTY 161
             F +K  +  DG L    +     E + +P + WY+  K +          K       
Sbjct: 5   AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD------ 58

Query: 162 LLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ 198
             RL + N  +   GNY C+A  +       I    +
Sbjct: 59  --RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 316 EKPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLE 374
           E+  I      ++ V  C +   +    I W+ +  +   +   +  +    +K    L 
Sbjct: 7   EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK----LW 62

Query: 375 VKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
               + ED+G Y C ++N    L   ++   
Sbjct: 63  FVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 93

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 105 PRFPK---KPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKKSIGK 158
           PR      +PT+   G    +EC +          +  ++G + +      K +      
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP--- 58

Query: 159 DTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALN 196
                        +D   N+ C A   +     NI   
Sbjct: 59  QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK 96

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 326 GKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI------SWNVTLKGDKYHIRLEVKDPR 379
              V         P+ E++W  +  ++ + +        S+   +  D     L + +  
Sbjct: 10  YGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 380 KEDTGLYKCNIKNFHGELNANLT 402
             D   Y+    N    +   L 
Sbjct: 69  SSDEDEYEMESPNITDTMKFFLY 91

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL-----RLEINNPT 171
              +         P+ +++W +    + +    +    S  K+   L      L I N T
Sbjct: 10  YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 172 KDDGGNYRCNACNSIGESNANI 193
             D   Y   + N        +
Sbjct: 69  SSDEDEYEMESPNITDTMKFFL 90

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 13/92 (14%)

Query: 104 APRFPKKPTIHQD------GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           APR      + +       GD + + C          + +         G        +G
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHW--VLRKPAAGSHPSRWAGMG 59

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGES 189
           +     RL + +    D GNY C        +
Sbjct: 60  R-----RLLLRSVQLHDSGNYSCYRAGRPAGT 86

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 8/100 (8%)

Query: 306 EPEGDPPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK 365
            P    P       + +   G  V + C          V +                   
Sbjct: 2   APRR-CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWV--LRKPAAGSHPSRWAGM 58

Query: 366 GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
           G     RL ++  +  D+G Y C           +L +++
Sbjct: 59  GR----RLLLRSVQLHDSGNYSCYRAG-RPAGTVHLLVDV 93

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
            PT   +    S   G  V++ C+V+ + + +  W     E   T   S           
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG-----LPSL 56

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNI 405
                      +     C  +N  G    ++ +N+
Sbjct: 57  GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEI 267
           P+   +      + G  + ++C+   +   +  W   +       +    V +      +
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL------EQSATVMKSGGLPSL 56

Query: 268 ICEITDPI-GPDSGTYRCNVKNEFGESNANLNLNI 301
              + +     +     C  +N+ G +  ++ +N+
Sbjct: 57  GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 56  AVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVNLNFSE 92
             L I+NV+ SD G Y    ++ + +  + V L   +
Sbjct: 81  VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 24/127 (18%), Positives = 37/127 (29%), Gaps = 30/127 (23%)

Query: 108 PKKPTIHQDGDLLVMECVLEASPMPDIIW--------------------YQGTKVIEDTG 147
           P  P     GD   + C +        +                         +  E  G
Sbjct: 8   PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 67

Query: 148 RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQGGENGAGFA 207
           R ++ K+SIG+    LR  I N    D G Y C   +   +  A + L  +         
Sbjct: 68  RTELLKESIGEGKVALR--IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE--------D 117

Query: 208 PSFIEKP 214
           P +   P
Sbjct: 118 PFYWINP 124

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 8/41 (19%)

Query: 278 DSGTYRCNVKNEFGESNANLNLNIEAEAEPEGDPPTFIEKP 318
           D G Y C  ++   +  A + L +E         P +   P
Sbjct: 92  DEGGYTCFFRDHSYQEEAAVELKVED--------PFYWINP 124

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 9  SYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDS 68
                +   ++       +       +   ++   L      +     L IKN+ + DS
Sbjct: 18 PNFQMTDDIDEVRWERGSTLV-----AEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS 72

Query: 69 GEYKVIAKNKNGEGSSTVNLN 89
          G Y V   + NG       L+
Sbjct: 73 GTYNVTVYSTNGTRILNKALD 93

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 11/90 (12%)

Query: 110 KPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLE 166
            P+    G  L + C +E         ++  +G K ++    +    +            
Sbjct: 12  LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT--------TT 63

Query: 167 INNPTKDDGGNYRCNACNSIGESNANIALN 196
           +       G  + C     +      +  N
Sbjct: 64  VLVRRDHHGAQFSCRTELDLRPQGLELFEN 93

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 107 FPKKPTIH-----QDGDLLVMEC-VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT 160
           FPK P IH     + G  + ++C V +  P   +             +  +         
Sbjct: 1   FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 60

Query: 161 YLLRLEINNPTK-DDGGNYRCNACNSIGE 188
                    P   D G    C A   I E
Sbjct: 61  TKSLEVTFTPVIEDIGKVLVCRAKLHIDE 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 7e-04
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 15/96 (15%)

Query: 312 PTFIEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYH 370
           P F  +PK  +        + C+         IVW+    ++         +        
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN------- 54

Query: 371 IRLEVKDPRKEDTGLYKCNIKNFHGE-LNANLTLNI 405
                       + ++ C   N  G   +   T+++
Sbjct: 55  ------VTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 9/100 (9%)

Query: 102 GKAPRFPKKP----TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIG 157
           G    F  +      I +   ++         P     W             +       
Sbjct: 1   GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 60

Query: 158 KDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNF 197
            +     L I      D GNY C A + I     ++   F
Sbjct: 61  GN-----LYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 95

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 3/85 (3%)

Query: 117 GDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL---RLEINNPTKD 173
            + + + C       P + W                  +  +D        +   + T++
Sbjct: 19  NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 174 DGGNYRCNACNSIGESNANIALNFQ 198
           D G Y C      G S   + +   
Sbjct: 79  DTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 104 APRFPKKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLL 163
           +P    + T  + G    ++CVL  +    +I ++      D                  
Sbjct: 5   SPAKTHEKTPIE-GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 63

Query: 164 RLEINNPTKD---DGGNYRCNACNSIGESNANIALNFQGG 200
            L     TK+   D   Y C A N+  +    +      G
Sbjct: 64  NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKG 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.63
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.63
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.59
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.52
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.51
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.5
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.49
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.48
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.48
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.48
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.48
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.47
d2avga1	110	Cardiac myosin binding protein C, different domain	99.47
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.45
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.45
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.44
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.44
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.44
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.43
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.43
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.43
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.42
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.42
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.42
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.41
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.4
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.39
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.39
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.38
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.37
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.37
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.37
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.36
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.36
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.36
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.35
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.35
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.35
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.32
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.32
d2avga1	110	Cardiac myosin binding protein C, different domain	99.31
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.31
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.31
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.3
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.29
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.29
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.27
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.27
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.27
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.26
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.26
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.26
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.26
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.26
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.25
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.25
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.24
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.23
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.23
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.22
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.22
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.22
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.22
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.21
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.2
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.19
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.19
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.18
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.18
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.18
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.18
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.18
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.17
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.17
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.16
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.15
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.15
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.15
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.12
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.12
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.12
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.11
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.11
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.1
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.1
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.1
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.08
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.08
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.08
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.04
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.04
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.03
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.02
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.99
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.89
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.88
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.88
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.77
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.76
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.75
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.74
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.57
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.57
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.42
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.39
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.37
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.34
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.34
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.32
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.27
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.26
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.23
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.23
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.21
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.19
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.17
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.16
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.12
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.11
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.11
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.09
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.09
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.08
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.07
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.06
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.06
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.03
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.01
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.01
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.0
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.0
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.99
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.98
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.98
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.97
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.96
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.96
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.96
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.95
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.95
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.95
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.94
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.93
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.92
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.92
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.91
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.91
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.91
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.91
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.91
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.9
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.9
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.9
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.9
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.88
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.87
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.87
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.86
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.86
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.85
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.85
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.84
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.84
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.84
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.83
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.83
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.82
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.82
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.82
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.82
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.82
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.82
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.81
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.81
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.8
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.79
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.79
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.79
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.79
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.79
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.78
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.77
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.77
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.76
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.76
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.76
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.75
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.75
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.75
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.75
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.74
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.74
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.74
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.74
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.74
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.73
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.73
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.73
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.73
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.73
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.72
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.72
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.72
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.71
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.71
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.71
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.7
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.7
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.7
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.7
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.7
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.7
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.7
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.69
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.69
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.68
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.68
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.68
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.68
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.67
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.67
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.66
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.66
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.65
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.65
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.65
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.65
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.64
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.64
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.64
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.64
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.63
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.63
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.62
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.62
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.62
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.62
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.62
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.62
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.62
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.61
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.61
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.61
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.61
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.61
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.61
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.61
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.6
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.6
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.59
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.59
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.59
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.58
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.58
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.58
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.57
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.57
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.57
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.56
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.56
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.56
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.56
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.56
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.56
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.55
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.55
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.55
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.55
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.54
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.54
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.54
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.54
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.54
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.53
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.53
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.53
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.53
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.52
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.52
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.52
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.51
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.51
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.51
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.51
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.51
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.51
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.51
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.5
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.5
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.5
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.5
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.49
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.49
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.48
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.48
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.48
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.48
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.48
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.48
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.48
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.48
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.47
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.47
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.47
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.47
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.45
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.45
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.44
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.44
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.44
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.43
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.43
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.43
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.43
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.42
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.42
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.42
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.42
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.42
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.42
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.41
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.41
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.41
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.4
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.4
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.39
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.39
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.39
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.39
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.39
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.38
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.38
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.38
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.37
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.37
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.36
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.36
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.36
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.36
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.36
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.35
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.33
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.33
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.33
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.32
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.32
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.32
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.32
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.31
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.31
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.31
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.31
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.3
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.29
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.28
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.28
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.28
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.28
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.28
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.27
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.27
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.27
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.26
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.25
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.25
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.25
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.25
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.25
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.24
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.24
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.22
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.22
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.21
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.2
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.19
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.15
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.14
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.14
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.13
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.07
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.07
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.07
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.07
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.05
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.05

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.3e-15  Score=111.07  Aligned_cols=87  Identities=26%  Similarity=0.554  Sum_probs=77.4

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |.|+..+.+..+..|+++.|.|.+.|.|.|.+.|+++|.++....++...    +.    .|.|.++..+|+|.|+|.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~----~~----~L~i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GG----ELRFSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TT----EEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee----ee----eEEEEeecccCCEEEEEEEE
Confidence            56778888899999999999999999999999999999999887765432    22    79999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIE  406 (540)
Q Consensus       392 n~~g~~~~~~~l~V~  406 (540)
                      |..|....+..|.|+
T Consensus        74 N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          74 NKHGTVYASAELTVQ   88 (89)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999999999999886

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=3e-15  Score=111.61  Aligned_cols=94  Identities=23%  Similarity=0.423  Sum_probs=81.9

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.|+..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.+.......++   ..+|.|.++..+|+|.|+|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccce---EEEEEeccCccccCEEEEEEE
Confidence            67788888889999999999999999999999999999999988777554433333   238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        81 ~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          81 INIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999999999998874

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.63  E-value=2.3e-15  Score=113.28  Aligned_cols=94  Identities=22%  Similarity=0.446  Sum_probs=82.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+.....+   ..+|.|.++..+|+|.|+|.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a   84 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKA   84 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCc---eeeeEecCCCHHhCEEEEEEE
Confidence            67788888889999999999999999999999999999999998887765443332   348999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~~  407 (540)
                      .|..|....++.|.|..
T Consensus        85 ~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          85 VNSLGEATCTAELLVET  101 (102)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999999999998864

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.7e-15  Score=111.83  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.++..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.+......  +.  ...|.|.++..+|+|.|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~--~~--~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK--SS--TTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEE--TT--EEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccc--cc--ceeeccccccccccEEEEEEE
Confidence            56777778888999999999999999999999999999999988777655432  22  238999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~  406 (540)
                      .|..|..+.++.|.|+
T Consensus        78 ~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          78 KNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEC
Confidence            9999999999888874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4e-15  Score=111.57  Aligned_cols=92  Identities=21%  Similarity=0.333  Sum_probs=79.4

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |.|+..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++.+...  .+  .++|.|.++..+|+|.|+|.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~--~~--~~~L~I~~~~~~D~G~Y~C~a~   76 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS--EN--GSKLTILAARQEHCGCYTLLVE   76 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEEC--SS--EEEEEETTCCTTTCEEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEe--cc--eeEEEEeeCCcccCEEEEEEEE
Confidence            3455567778899999999999999999999999999999988877765432  22  2489999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIEM  407 (540)
Q Consensus       392 n~~g~~~~~~~l~V~~  407 (540)
                      |..|....++.|.|..
T Consensus        77 N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          77 NKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             CSSCEEECCEEEEEEC
T ss_pred             ECCCEEEEEEEEEEEe
Confidence            9999999999999987

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=2.3e-15  Score=112.03  Aligned_cols=92  Identities=26%  Similarity=0.436  Sum_probs=79.7

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      |.|+..+....+.+|+.+.|.|.+.|.|.|.|.|+++|..+..+.++.+.  ..++  ...|.|.++..+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~--~~~~--~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR--YNGN--DYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCC--CSTT--EEEEEESCCCSGGGSCEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEE--ecCC--eeEEEeCCCceecCEEEEEEEE
Confidence            67788888888999999999999999999999999999999887765442  2232  3479999999999999999999


Q ss_pred             cCCeeeEEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIEM  407 (540)
Q Consensus       392 n~~g~~~~~~~l~V~~  407 (540)
                      |..|....++.|.|..
T Consensus        78 N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          78 NSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             ETTEEEEEEECCEEEC
T ss_pred             ECCCEEEEEEEEEEee
Confidence            9999999999998875

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=3.9e-14  Score=103.02  Aligned_cols=86  Identities=31%  Similarity=0.593  Sum_probs=70.8

Q ss_pred             CCeEEeCC-ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKP-KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+... +...  .  ++    .|.|.++..+|+|.|+|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~--~--~~----~L~i~~v~~~d~G~Y~C~   72 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV--T--DS----GLVIKGVKNGDKGYYGCR   72 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE--E--TT----EEEESSCCSTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE--e--ee----eEEECCCChhhCEEEEEE
Confidence            45666655 4456789999999999999999999999999999654 2221  1  22    699999999999999999


Q ss_pred             EEcCCeeeEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNI  405 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V  405 (540)
                      |.|..|....++.|.|
T Consensus        73 a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          73 ATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999999988888876

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.9e-14  Score=106.04  Aligned_cols=95  Identities=22%  Similarity=0.346  Sum_probs=81.0

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+.....    .+.|.|.++..+|+|.|+|.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~   76 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN----GSKLTILAARQEHCGCYTLLVE   76 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSS----EEEEEETTCCTTTCEEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecc----eeEEEEeeCCcccCEEEEEEEE
Confidence            455666777888899999999999999999999999999998877776654322    2479999999999999999999


Q ss_pred             cCCCCeeeeEEEEEeeccC
Q psy670          288 NEFGESNANLNLNIEAEAE  306 (540)
Q Consensus       288 ~~~~~~~~~~~l~v~~~~~  306 (540)
                      |..|....++.|.|...+.
T Consensus        77 N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          77 NKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             CSSCEEECCEEEEEECSCS
T ss_pred             ECCCEEEEEEEEEEEecCC
Confidence            9999999999999987554

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=2e-14  Score=104.60  Aligned_cols=87  Identities=23%  Similarity=0.496  Sum_probs=75.2

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|...+.+..+..|+++.|.|.+.|.|.+.+.|+++|..+....++.+..        ..|.|.++..+|+|.|+|.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG--------GELRFSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET--------TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeee--------eeEEEEeecccCCEEEEEEEE
Confidence            566777788888999999999999999999999999999998777655421        169999999999999999999


Q ss_pred             cCCCCeeeeEEEEEe
Q psy670          288 NEFGESNANLNLNIE  302 (540)
Q Consensus       288 ~~~~~~~~~~~l~v~  302 (540)
                      |..|....+..|.|.
T Consensus        74 N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          74 NKHGTVYASAELTVQ   88 (89)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCEEEEEEEEEEE
Confidence            999988888888775

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.52  E-value=2.4e-15  Score=110.42  Aligned_cols=88  Identities=24%  Similarity=0.493  Sum_probs=74.4

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      +..|....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....+..+.....    ..+|.|.++..+|+|.|+|.|.|..
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~   78 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY----KSTFEISSVQASDEGNYSVVVENSE   78 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSS----EEEEECSSCCSCCCEEEEEECBCSS
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecc----eeEEeecCCCHHHCEEEEEEEEECC
Confidence            345667789999999999999999999999999999998777665443222    3389999999999999999999999


Q ss_pred             eeeEEEEEEEEE
Q psy670          395 GELNANLTLNIE  406 (540)
Q Consensus       395 g~~~~~~~l~V~  406 (540)
                      |....++.|.|+
T Consensus        79 G~~~~~~~l~V~   90 (91)
T d1tnna_          79 GKQEAEFTLTIQ   90 (91)
T ss_dssp             CBCCEEEEEECC
T ss_pred             CEEEEEEEEEEE
Confidence            999888888774

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=6.7e-14  Score=102.40  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=69.8

Q ss_pred             CCeEEeC-CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+... |....+.+|+.+.|.|.+.|.|.|.+.|++++........      ..+.    +|.|.++..+|+|.|+|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~------~~~~----~L~I~~v~~~D~G~Y~C~   73 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL------SSEP----LLHIQNVDFEDEGTYECE   73 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS------BSSS----EEEECSCCGGGCEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee------eeee----EEEeCCCCccCCEEEEEE
Confidence            4555543 6778899999999999999999999999997654433211      1222    799999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIE  406 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~  406 (540)
                      |.|..|....++.|.|.
T Consensus        74 a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          74 AENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999999999988885

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.7e-14  Score=105.54  Aligned_cols=94  Identities=22%  Similarity=0.455  Sum_probs=71.9

Q ss_pred             CCeEEeCCce--EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEE-EEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKI--RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWN-VTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~--~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      ||.+...+..  ..+..|+.+.|.|.+.|.|.|.|.|+++|..+......... ....+.   ++|.|.++..+|+|.|+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTS---CEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCc---eEEEeCCCCcccCEEEE
Confidence            5566554443  34567999999999999999999999999998654332111 111222   28999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|..|....++.|.|..
T Consensus        80 C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          80 CIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEEE
Confidence            99999999999999998864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.51  E-value=5.8e-14  Score=105.39  Aligned_cols=94  Identities=31%  Similarity=0.544  Sum_probs=81.0

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+..+......   ..+|.|.+++.+|.|.|+|.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCc---eeeeEecCCCHHhCEEEEEE
Confidence            367787788888899999999999999999999999999999988877766544322   34799999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEe
Q psy670          286 VKNEFGESNANLNLNIE  302 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~  302 (540)
                      |.|..|....++.|.|.
T Consensus        84 a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          84 AVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEEE
Confidence            99999998888888775

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=4.5e-14  Score=103.52  Aligned_cols=90  Identities=20%  Similarity=0.393  Sum_probs=74.1

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      +.|...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+............++     +|.|.+++.+|+|.|+|.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~   76 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGR   76 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee-----eEEECCCCHHhCEEEEEEEE
Confidence            4566778889999999999999999999999999999999987665444333322     69999999999999999999


Q ss_pred             cCCeeeEEEEEEEEE
Q psy670          392 NFHGELNANLTLNIE  406 (540)
Q Consensus       392 n~~g~~~~~~~l~V~  406 (540)
                      |..+.......+.|.
T Consensus        77 n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          77 ILARGEINFKDIQVI   91 (92)
T ss_dssp             EGGGTEEEEEEEEEE
T ss_pred             ECcCCEEEEEEEEEE
Confidence            988777666666653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.50  E-value=2.7e-14  Score=106.16  Aligned_cols=93  Identities=29%  Similarity=0.426  Sum_probs=77.8

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+....++.+...    .....|.|.++..+|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN----GNDYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCS----TTEEEEEESCCCSGGGSCEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEec----CCeeEEEeCCCceecCEEEEEEEE
Confidence            5677778888889999999999999999999999999999987765543221    223479999999999999999999


Q ss_pred             cCCCCeeeeEEEEEeec
Q psy670          288 NEFGESNANLNLNIEAE  304 (540)
Q Consensus       288 ~~~~~~~~~~~l~v~~~  304 (540)
                      |..|.....+.|.|...
T Consensus        78 N~~G~~~~~~~l~V~~~   94 (97)
T d1koaa1          78 NSYGTKEEIVFLNVTRH   94 (97)
T ss_dssp             ETTEEEEEEECCEEECS
T ss_pred             ECCCEEEEEEEEEEeec
Confidence            99998888888888653

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=4.1e-14  Score=104.98  Aligned_cols=82  Identities=27%  Similarity=0.514  Sum_probs=68.1

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEE-EEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISW-NVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|.++....+... ....+..    +|.|.++..+|+|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW----SLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGT----EEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcE----EEEECCCCcccCEEEEEEEEECCCEEE
Confidence            35677899999999999999999999999999976544322 1122222    899999999999999999999999999


Q ss_pred             EEEEEEE
Q psy670          399 ANLTLNI  405 (540)
Q Consensus       399 ~~~~l~V  405 (540)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988887

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.49  E-value=7.4e-14  Score=103.92  Aligned_cols=94  Identities=24%  Similarity=0.363  Sum_probs=79.9

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+........ +  ...|.|.++...|.|.|+|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~c~a   80 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED-N--VCELVIRDVTGEDSASIMVKA   80 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET-T--EEEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccc-e--EEEEEeccCccccCEEEEEEE
Confidence            6778778888889999999999999999999999999999998776655543322 2  247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEEee
Q psy670          287 KNEFGESNANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v~~  303 (540)
                      .|..|.......|.|..
T Consensus        81 ~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          81 INIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCcEEEEEEEEEEEE
Confidence            99999988888888753

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.49  E-value=4.4e-14  Score=104.80  Aligned_cols=84  Identities=23%  Similarity=0.367  Sum_probs=67.7

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+++.|.|.+.|.|.+.+.|+++|..+....+.........    ..+|.|.++..+|+|.|+|.+.|..|..
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   88 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDKGNYTCVVENEYGSI   88 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCC----cEEEEECCCCcccCEEEEEEEEECCCEE
Confidence            335678999999999999999999999999999865543322111111    1289999999999999999999999998


Q ss_pred             EEEEEEEE
Q psy670          190 NANIALNF  197 (540)
Q Consensus       190 ~~~~~l~v  197 (540)
                      ...+.|.|
T Consensus        89 ~~~~~l~V   96 (97)
T d3dara1          89 NHTYHLDV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888877

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.5e-14  Score=102.06  Aligned_cols=87  Identities=22%  Similarity=0.412  Sum_probs=71.8

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      |....+.+|+.+.|.|.+.+.|.+.+.|++++..+.........  .........|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIP--VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEE--EETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeee--ecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            55678889999999999999999999999999999776654433  2334445589999999999999999999999875


Q ss_pred             -EEEEEEEEE
Q psy670          398 -NANLTLNIE  406 (540)
Q Consensus       398 -~~~~~l~V~  406 (540)
                       +..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             567777774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-13  Score=99.36  Aligned_cols=82  Identities=17%  Similarity=0.384  Sum_probs=65.5

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      |.|...|.+..+.+|+++.|.|.+.|.|.| .|.|++||..+.....        +     .+.|.....+|+|.|+|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~--------~-----~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------S-----PSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE--------S-----SEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC--------c-----ceEEecCCccccEEEEEEE
Confidence            567778888899999999999999999987 8999999998865432        1     2344445567999999999


Q ss_pred             EcCCeee-EEEEEEEEE
Q psy670          391 KNFHGEL-NANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~-~~~~~l~V~  406 (540)
                      +|..|.. ++.++|.|+
T Consensus        69 ~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          69 HNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EETTEEEECCCEEEEEC
T ss_pred             EcCCCcEEEEEEEEEEC
Confidence            9999965 456777663

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.48  E-value=1.1e-13  Score=100.66  Aligned_cols=77  Identities=21%  Similarity=0.482  Sum_probs=65.8

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+++.|.|.+.|.|.+.+.|+++|..+..+ +.....     +    .|.|.++..+|+|.|+|.|.|..|...
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~-----~----~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD-----S----GLVIKGVKNGDKGYYGCRATNEHGDKY   81 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEET-----T----EEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEee-----e----eEEECCCChhhCEEEEEEEEECCCEEE
Confidence            346789999999999999999999999999999644 433321     1    699999999999999999999999988


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        82 ~~~~l~V   88 (89)
T d1biha4          82 FETLVQV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888876

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-13  Score=102.44  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      .+....|.|.+.|.|.|.+.|+++|..+............++....+.|.|.+++.+|+|.|+|.|+|..|..+.++.|.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            45567788999999999999999999998888777766667777778999999999999999999999999999999998


Q ss_pred             EEE
Q psy670          405 IEM  407 (540)
Q Consensus       405 V~~  407 (540)
                      |..
T Consensus        96 V~~   98 (105)
T d1wwca_          96 FLK   98 (105)
T ss_dssp             CSC
T ss_pred             EEe
Confidence            876

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.47  E-value=5.5e-14  Score=103.47  Aligned_cols=91  Identities=21%  Similarity=0.349  Sum_probs=78.8

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      +|.|...+....+.+|+++.|.|.+.|.|.+.+.|++++..+....+........    ...|.|.++..+|+|.|+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSS----TTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETT----EEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccccc----ceeeccccccccccEEEEEEE
Confidence            6778778888999999999999999999999999999999988777766554432    247999999999999999999


Q ss_pred             EcCCCCeeeeEEEEE
Q psy670          287 KNEFGESNANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v  301 (540)
                      .|..|.....+.|.|
T Consensus        78 ~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          78 KNELGEDEAIFEVIV   92 (93)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999888877776

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.5e-13  Score=100.44  Aligned_cols=97  Identities=16%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccC---CCeEEEEECCEEccC-C--CceEEE--EEecCCeeEEEEEEcCCCCCC
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKP---MPEIVWFHEGKELQQ-T--DRISWN--VTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~i~W~~~~~~~~~-~--~~~~~~--~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .+.|+..|....+..|++++|.|.+.|.|   .|.|.|++++..... .  ......  .........++|.|.+++.+|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            45778888889999999999999999998   578999998754322 2  222222  222344556789999999999


Q ss_pred             CeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          383 TGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       383 ~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|+|.|+|..|..+.++.|.|..
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999999975

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.5e-14  Score=99.95  Aligned_cols=73  Identities=11%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      ..+.+|++++|.|.+.|.|.|.+.|++++..+....          .    .|.|.++..+|+|.|+|.|.|..|....+
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~----------~----~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~   74 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG----------K----TLSVSQLELQDSGTWTCTVLQNQKKVEFK   74 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES----------S----EEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccceeee----------e----eeeeeecccccccEEEEEEEeCCCEEEEE
Confidence            457899999999999999999999999765443222          1    79999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy670          401 LTLNIEM  407 (540)
Q Consensus       401 ~~l~V~~  407 (540)
                      +.|.|..
T Consensus        75 ~~v~V~~   81 (84)
T d2nxyb2          75 IDIVVLA   81 (84)
T ss_dssp             EEECEEC
T ss_pred             EEEEEEe
Confidence            9988875

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=1.5e-13  Score=101.92  Aligned_cols=86  Identities=19%  Similarity=0.418  Sum_probs=68.7

Q ss_pred             CCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .....+.+|+++.|.|.+.|.|.+.+.|+++|..+................   .+|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTT---SEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCC---CEEEEEeccccccEEEEEEEEECCCc
Confidence            356778899999999999999999999999999987655444432222222   37999999999999999999999987


Q ss_pred             e-EEEEEEEE
Q psy670          189 S-NANIALNF  197 (540)
Q Consensus       189 ~-~~~~~l~v  197 (540)
                      . +..+.|+|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5 45777776

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.3e-13  Score=99.22  Aligned_cols=94  Identities=19%  Similarity=0.369  Sum_probs=72.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEc----cCCCceEEEEEecCCeeEEEEEEcCCC-CCCCe
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKEL----QQTDRISWNVTLKGDKYHIRLEVKDPR-KEDTG  384 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G  384 (540)
                      ||.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++...    ......++.....+.  .+.|.|.++. .+|+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG--RSELHIENLNMEADPG   79 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETT--EEEEEECSCCTTTSSE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCC--EEEEEEeccccccCCE
Confidence            6777777888889999999999999999987 79999975322    222222223333333  3489999998 57999


Q ss_pred             eEEEEEEcCCeeeEEEEEEEEE
Q psy670          385 LYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       385 ~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .|+|.|.|..|.....+.|.|+
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEC
Confidence            9999999999999999988874

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.7e-13  Score=101.27  Aligned_cols=84  Identities=25%  Similarity=0.376  Sum_probs=66.4

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      .+..|+++.|.|.+.|.|.+.+.|+++|..+................   +.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDEAEYVCIAENKAGEQDAS   92 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTS---CEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCc---eEEEeCCCCcccCEEEEEEEEECCCEEEEE
Confidence            46789999999999999999999999999886543322111111111   389999999999999999999999999989


Q ss_pred             EEEEEec
Q psy670          193 IALNFQG  199 (540)
Q Consensus       193 ~~l~v~~  199 (540)
                      +.|.|..
T Consensus        93 ~~l~V~~   99 (100)
T d1qz1a3          93 IHLKVFA   99 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEE
Confidence            9998864

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=102.69  Aligned_cols=80  Identities=21%  Similarity=0.434  Sum_probs=67.1

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeEE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTVN   87 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~~   87 (540)
                      ++|.+.|+|.      |.+.|+|||.+|..+.++.+...... .....+.|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus        21 i~~~v~G~P~------P~i~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          21 IPFTVKGNPK------PALQWFYNGAILNESKYICTKIHVTN-HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             EEEEEECSSC------CEEEEEETTEEECCCSSEEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEEeCC------CEEEEEECCEEeeeeeeeeeeecccc-cccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            5689999999      99999999999998887776554333 2234578999999999999999999999999999998


Q ss_pred             EEEeecC
Q psy670           88 LNFSEED   94 (540)
Q Consensus        88 l~v~~~~   94 (540)
                      |.|...|
T Consensus        94 v~V~~~P  100 (103)
T d1wwbx_          94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEEEeCC
Confidence            8886654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.44  E-value=3.9e-13  Score=99.54  Aligned_cols=87  Identities=23%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +.+..+..|+++.|.|.+.|.|.+.+.|+++|..+...............  ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   87 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS--GKRLLFKTTLPEDEGVYTCEVDNGVGKP   87 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSST--TSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecC--CCEEEEEeccccccEEEEEEEEECCCcE
Confidence            45678889999999999999999999999999999765544332221111  2279999999999999999999999875


Q ss_pred             -EEEEEEEEE
Q psy670          398 -NANLTLNIE  406 (540)
Q Consensus       398 -~~~~~l~V~  406 (540)
                       +.++.|+|.
T Consensus        88 ~s~s~~L~Vl   97 (97)
T d1biha3          88 QKHSLKLTVV   97 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence             457778763

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.44  E-value=6.7e-13  Score=101.12  Aligned_cols=95  Identities=23%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             CCeEEeC-CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCC----CceEE-----EEEecCCeeEEEEEEcCCCC
Q psy670          311 PPTFIEK-PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT----DRISW-----NVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       311 ~p~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~L~i~~~~~  380 (540)
                      +|.+... |....+..|+++.|.|.+.|.|.|.|.|++++......    .....     ..........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5666554 67889999999999999999999999999976543211    11000     11112333456899999999


Q ss_pred             CCCeeEEEEEEcCCeeeEEEEEEEE
Q psy670          381 EDTGLYKCNIKNFHGELNANLTLNI  405 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~g~~~~~~~l~V  405 (540)
                      +|+|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999999887

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-12  Score=97.34  Aligned_cols=85  Identities=20%  Similarity=0.424  Sum_probs=74.3

Q ss_pred             cCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEE
Q psy670          115 QDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNANIA  194 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~  194 (540)
                      ..+....|.|.+.|.|.|++.|+++|..+..+.+..............+.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            36777889999999999999999999999887777766555555556678999999999999999999999999999999


Q ss_pred             EEEec
Q psy670          195 LNFQG  199 (540)
Q Consensus       195 l~v~~  199 (540)
                      |.|.+
T Consensus        94 v~V~~   98 (103)
T d1wwbx_          94 AHFMG   98 (103)
T ss_dssp             ECCSC
T ss_pred             EEEEe
Confidence            98876

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.43  E-value=7.7e-14  Score=102.14  Aligned_cols=89  Identities=24%  Similarity=0.509  Sum_probs=74.6

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNE  289 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  289 (540)
                      |+..|..+.+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......+.....    ...|.|.++..+|+|.|+|.|.|.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~   77 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY----KSTFEISSVQASDEGNYSVVVENS   77 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSS----EEEEECSSCCSCCCEEEEEECBCS
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecc----eeEEeecCCCHHHCEEEEEEEEEC
Confidence            3456777889999999999999999999999999999988777665544322    347999999999999999999999


Q ss_pred             CCCeeeeEEEEEe
Q psy670          290 FGESNANLNLNIE  302 (540)
Q Consensus       290 ~~~~~~~~~l~v~  302 (540)
                      .|.....+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1tnna_          78 EGKQEAEFTLTIQ   90 (91)
T ss_dssp             SCBCCEEEEEECC
T ss_pred             CCEEEEEEEEEEE
Confidence            9998887777663

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=5.9e-13  Score=97.05  Aligned_cols=83  Identities=20%  Similarity=0.347  Sum_probs=68.5

Q ss_pred             EeCCceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      +..+....+.+|+++.|.|.+. +.|.+.+.|++++..+......     ..++    .|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-----~~~~----~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNG----ILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-----EETT----EEEECSCCGGGCEEEEEEEECS
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-----eece----EEEEecCCcccCEEEEEEEEEC
Confidence            3446677889999999999997 5788999999998877654421     1122    7999999999999999999999


Q ss_pred             CeeeEEEEEEEEE
Q psy670          394 HGELNANLTLNIE  406 (540)
Q Consensus       394 ~g~~~~~~~l~V~  406 (540)
                      .|....+++|.|+
T Consensus        77 ~G~~~~~~~l~V~   89 (89)
T d1gl4b_          77 FAMDQGTATLHVQ   89 (89)
T ss_dssp             SCEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9999998888874

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-13  Score=97.80  Aligned_cols=73  Identities=14%  Similarity=0.196  Sum_probs=63.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA  191 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (540)
                      ..+.+|++++|.|.+.|.|.|.+.|++++..+.....               .|.|.++..+|+|.|+|.|.|..|....
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~~---------------~l~i~~v~~~DsG~Y~C~a~N~~g~~~~   73 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLELQDSGTWTCTVLQNQKKVEF   73 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEESS---------------EEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccceeeee---------------eeeeeecccccccEEEEEEEeCCCEEEE
Confidence            4578999999999999999999999997654432211               7999999999999999999999999999


Q ss_pred             EEEEEEec
Q psy670          192 NIALNFQG  199 (540)
Q Consensus       192 ~~~l~v~~  199 (540)
                      .+.|.|.+
T Consensus        74 ~~~v~V~~   81 (84)
T d2nxyb2          74 KIDIVVLA   81 (84)
T ss_dssp             EEEECEEC
T ss_pred             EEEEEEEe
Confidence            99998875

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.3e-13  Score=100.40  Aligned_cols=94  Identities=17%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECCEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEGKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      ++..+....+..|+.+.|.|.+.|.| .|.|+|++++..+.. ..........++......|.|.++..+|+|.|+|.|.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            44456677899999999999999998 589999998876543 2222333334444555689999999999999999999


Q ss_pred             cCCeeeE-EEEEEEEEE
Q psy670          392 NFHGELN-ANLTLNIEM  407 (540)
Q Consensus       392 n~~g~~~-~~~~l~V~~  407 (540)
                      |..|... .++.|.|.+
T Consensus        86 N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          86 FQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             cCCCeEEEEEEEEEEEE
Confidence            9999754 578888764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.6e-13  Score=96.80  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+......     ...  ...+|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-----~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~   82 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-----NEG--TTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEE-----EET--TEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeee-----eec--CCcEEEEecccccccceEEEEEEeCCCEEEE
Confidence            345678999999999999999999999987765433211     111  1238999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy670          400 NLTLNIE  406 (540)
Q Consensus       400 ~~~l~V~  406 (540)
                      ++.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998885

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4e-13  Score=98.00  Aligned_cols=80  Identities=15%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+...... .       ......|.|.+++.+|+|.|+|.|.|..|..+
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-~-------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   81 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-N-------EGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEE-E-------ETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeee-e-------ecCCcEEEEecccccccceEEEEEEeCCCEEE
Confidence            456779999999999999999999999987765433211 1       11123899999999999999999999999999


Q ss_pred             EEEEEEEe
Q psy670          191 ANIALNFQ  198 (540)
Q Consensus       191 ~~~~l~v~  198 (540)
                      ..+.|.|.
T Consensus        82 ~~~~v~V~   89 (90)
T d1vcaa2          82 KGIQVEIY   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99998875

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.40  E-value=2.7e-13  Score=100.54  Aligned_cols=89  Identities=25%  Similarity=0.480  Sum_probs=70.0

Q ss_pred             CCeEEeCCceEEeeCC---CeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGG---KLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g---~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +|.|+..|....+.+|   +.+.|.|.+.|.|.|.+.|+++|..+........... ++.    .|.|..+..+|+|.|+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-~~~----~l~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGD----LVISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-TTE----EEEESCCHHHHCEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-eee----EEEEecccccCCEEEE
Confidence            5677777877776655   7899999999999999999999999976655444332 221    6888889999999999


Q ss_pred             EEEEcCCeee-EEEEEEE
Q psy670          388 CNIKNFHGEL-NANLTLN  404 (540)
Q Consensus       388 C~a~n~~g~~-~~~~~l~  404 (540)
                      |.|.|..|.. ++.++|+
T Consensus        79 C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          79 CVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEEEECCCEEEE
T ss_pred             EEEEECCCEEEEEEEEEe
Confidence            9999999976 4456553

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=3.4e-13  Score=99.43  Aligned_cols=83  Identities=18%  Similarity=0.309  Sum_probs=67.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      .|.|...|....+.+|+.+.|.|.+.|.|.| .+.|+++|..+......... ..+..    +|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~-~~~~~----~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-RKDEG----SLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE-CTTSC----CEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee-cccce----EEEEeccChhcCeEEEEE
Confidence            5677778888899999999999999999866 79999999998665443222 22222    799999999999999999


Q ss_pred             EEcCCeeeE
Q psy670          390 IKNFHGELN  398 (540)
Q Consensus       390 a~n~~g~~~  398 (540)
                      |.|..|...
T Consensus        77 a~N~~G~~~   85 (94)
T d1biha1          77 AETPAGVAS   85 (94)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCCEEE
Confidence            999999753

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.5e-14  Score=101.88  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCe-eEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG-LYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~  389 (540)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......      ........|.|.+++.+|.| .|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~~Y~C~   75 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK------SGGLPSLGLTLANVTSDLNRKNVTCW   75 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC------CCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee------eeeccceeEEEccccccccceEEEEE
Confidence            466776777788999999999999999999999999998776542221      11222348999999999999 69999


Q ss_pred             EEcCCeeeEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNI  405 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V  405 (540)
                      |.|..|....++.|.|
T Consensus        76 a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          76 AENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEETTEECCEEECCCC
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9999999988887765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.1e-13  Score=100.89  Aligned_cols=94  Identities=20%  Similarity=0.347  Sum_probs=73.8

Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccC---CCeEEEEECCEEcc---CCCceEEE--EEecCCeeEEEEEEcCCCCCCCee
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKP---MPEIVWFHEGKELQ---QTDRISWN--VTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~i~W~~~~~~~~---~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      |+..|....+.+|+.++|.|.+.|.|   .|.|.|++++....   ........  .........++|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            44567778899999999999999988   57999999875432   22223222  223344556689999999999999


Q ss_pred             EEEEEEcCCeeeEEEEEEEEEE
Q psy670          386 YKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       386 Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |+|.|.|..|..+.++.|.|..
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~  104 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHE  104 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEc
Confidence            9999999999999999999976

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=5.8e-13  Score=97.28  Aligned_cols=77  Identities=23%  Similarity=0.383  Sum_probs=62.9

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESN  190 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  190 (540)
                      ...+.+|+.++|.|.+.|.|.+.+.|+|++........        ..+   ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus        14 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--------~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1cs6a3          14 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL--------SSE---PLLHIQNVDFEDEGTYECEAENIKGRDT   82 (91)
T ss_dssp             EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS--------BSS---SEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee--------eee---eEEEeCCCCccCCEEEEEEEEECCCEEE
Confidence            45678999999999999999999999997654322111        011   1799999999999999999999999988


Q ss_pred             EEEEEEEe
Q psy670          191 ANIALNFQ  198 (540)
Q Consensus       191 ~~~~l~v~  198 (540)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1cs6a3          83 YQGRIIIH   90 (91)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88888875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-12  Score=95.73  Aligned_cols=97  Identities=19%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             CCCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          206 FAPSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      ++|.+.....   ...+....|.|.+.|+|.+.+.|+++|..+..................+.|.|.+++.+|+|.|+|.
T Consensus         4 ~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (105)
T d1wwca_           4 YPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI   80 (105)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             cCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEE
Confidence            3666543222   2245567788999999999999999999998877766655556666677899999999999999999


Q ss_pred             EEcCCCCeeeeEEEEEeecc
Q psy670          286 VKNEFGESNANLNLNIEAEA  305 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v~~~~  305 (540)
                      |.|..|..+.++.+.|...|
T Consensus        81 a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          81 AKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEETTEEEEEEEEECCSCCC
T ss_pred             EEcCCCEEEEEEEEEEEeCC
Confidence            99999998888888876543

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-13  Score=98.41  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.....                 +..++.+|+|.|+|.|.|..|..
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-----------------~~~v~~~d~G~Y~C~A~N~~G~~   73 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-----------------SVTVTRDLEGTYLCRARSTQGEV   73 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-----------------CEECCGGGCEEEEEEEEETTEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-----------------eeccccCCCCEEEEEEEcCCCEE
Confidence            4567888999999999999999999999999887654332                 23467889999999999999999


Q ss_pred             EEEEEEEEEE
Q psy670          398 NANLTLNIEM  407 (540)
Q Consensus       398 ~~~~~l~V~~  407 (540)
                      +.++.|.|..
T Consensus        74 ~~~~~l~V~~   83 (84)
T d2oz4a3          74 TREVTVNVLS   83 (84)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9999998875

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1e-12  Score=96.09  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=72.0

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      .|...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+..............     .|.|.+++..|+|.|+|.|.|
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~n   77 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRI   77 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee-----eEEECCCCHHhCEEEEEEEEE
Confidence            455667888999999999999999999999999999999877655444433221     599999999999999999999


Q ss_pred             CCCCeeeeEEEEEe
Q psy670          289 EFGESNANLNLNIE  302 (540)
Q Consensus       289 ~~~~~~~~~~l~v~  302 (540)
                      ..+.......+.|.
T Consensus        78 ~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          78 LARGEINFKDIQVI   91 (92)
T ss_dssp             GGGTEEEEEEEEEE
T ss_pred             CcCCEEEEEEEEEE
Confidence            87776666666553

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=98.99  Aligned_cols=81  Identities=16%  Similarity=0.378  Sum_probs=66.4

Q ss_pred             cceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCc-cceeeEEEEEEcccccCCCeeEEEEEEccCcceeeeE
Q psy670            8 KSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQ-SRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGEGSSTV   86 (540)
Q Consensus         8 ~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~~~~   86 (540)
                      +.|.+.|.|.      |.+.|+|||++|..+.+......... ......+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus        20 i~~~v~G~P~------P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          20 IPFSVDGQPA------PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             EEEEECCSSC------CEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEecC------CeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            3468999999      99999999999988777666543332 2333567899999999999999999999999998888


Q ss_pred             EEEEeecC
Q psy670           87 NLNFSEED   94 (540)
Q Consensus        87 ~l~v~~~~   94 (540)
                      .|.|..+|
T Consensus        94 ~v~v~~~P  101 (107)
T d1he7a_          94 MAAFMDNP  101 (107)
T ss_dssp             EECCCSCT
T ss_pred             EEEEEcCC
Confidence            88887655

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=93.99  Aligned_cols=86  Identities=16%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CeEEeCC-ceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          312 PTFIEKP-KIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       312 p~~~~~~-~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      |.++..+ ....+.+|+++.|.|.+. +.|.+.+.|++.+.++..   ..   ....   .+.|.|.+++.+|+|.|+|.
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~---~~~~---~~~L~i~~v~~~D~G~Y~C~   73 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQ---SDTG---RSVLTVRNASLSAAGTRVCV   73 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EE---EESS---EEEEEECSCCGGGCEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---ee---ccCc---eeeEEcCccChhhCCcEEEE
Confidence            4444444 446678999999999985 789999999987765532   11   1111   23899999999999999999


Q ss_pred             EEcCCeeeEEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNIE  406 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V~  406 (540)
                      |.|..|....++.|.|.
T Consensus        74 Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          74 GSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEC
Confidence            99999999999988874

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=94.82  Aligned_cols=87  Identities=18%  Similarity=0.429  Sum_probs=70.9

Q ss_pred             CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCCe
Q psy670          214 PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGES  293 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  293 (540)
                      |..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+...  .......|.|.+++.+|+|.|+|.|.|..|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVS--EQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEE--TTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeec--ccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            5677788999999999999999999999999999877665544443  23444579999999999999999999998874


Q ss_pred             -eeeEEEEEe
Q psy670          294 -NANLNLNIE  302 (540)
Q Consensus       294 -~~~~~l~v~  302 (540)
                       +..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             456667664

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=5.4e-12  Score=93.35  Aligned_cols=87  Identities=24%  Similarity=0.425  Sum_probs=65.0

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCC-CeEEEEEC-CEEccC-CCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPM-PEIVWFHE-GKELQQ-TDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~-~~i~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      .|....+..|+++.|.|.+.|.|+ +.+.|+++ |..+.. ..++.......+   .++|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD---SSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCc---ceEEEcccCchhhceEEEEEEEeC
Confidence            355677889999999999999885 79999984 555443 344443322222   238999999999999999999999


Q ss_pred             Ceee-EEEEEEEEE
Q psy670          394 HGEL-NANLTLNIE  406 (540)
Q Consensus       394 ~g~~-~~~~~l~V~  406 (540)
                      .|.. ..++.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            9864 456777664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=93.27  Aligned_cols=81  Identities=15%  Similarity=0.362  Sum_probs=63.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      |.|...|....+.+|+++.|.|.+.|.|.| ++.|+++|..+......             .+.|.....+|+|.|+|.|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~-------------~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------PSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEES-------------SEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCc-------------ceEEecCCccccEEEEEEE
Confidence            567777888889999999999999999987 89999999988654321             2345555667999999999


Q ss_pred             EcCCCCe-eeeEEEEE
Q psy670          287 KNEFGES-NANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~-~~~~~l~v  301 (540)
                      .|..|.. +..+.|.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999854 34566655

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=97.41  Aligned_cols=83  Identities=19%  Similarity=0.250  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec---CCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEE
Q psy670          325 GGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK---GDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNANL  401 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  401 (540)
                      ++....|.|.+.|.|.|.+.|+++|..+..+..........   .....+.|.|.++..+|+|.|+|.|.|..|...+++
T Consensus        14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            34445566689999999999999999998877665554432   223456899999999999999999999999999999


Q ss_pred             EEEEEE
Q psy670          402 TLNIEM  407 (540)
Q Consensus       402 ~l~V~~  407 (540)
                      .|.|..
T Consensus        94 ~v~v~~   99 (107)
T d1he7a_          94 MAAFMD   99 (107)
T ss_dssp             EECCCS
T ss_pred             EEEEEc
Confidence            998877

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.6e-12  Score=94.64  Aligned_cols=78  Identities=19%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             CccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+++.|.|.+. +.|.+.+.|+|++..+...... ..      +   ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus        11 ~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~~------~---~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1gl4b_          11 SQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-DF------N---GILTIRNVQPSDAGTYVCTGSNMFAMD   80 (89)
T ss_dssp             EEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-EE------T---TEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-ee------c---eEEEEecCCcccCEEEEEEEEECCCEE
Confidence            45688999999999996 6788899999988777554321 11      1   179999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      ...+.|.|.
T Consensus        81 ~~~~~l~V~   89 (89)
T d1gl4b_          81 QGTATLHVQ   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            888888773

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-11  Score=93.43  Aligned_cols=93  Identities=16%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CeEEeCC-ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE--Ee------cCCeeEEEEEEcCCCCCC
Q psy670          312 PTFIEKP-KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV--TL------KGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       312 p~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~------~~~~~~~~L~i~~~~~~d  382 (540)
                      |.++... ....+..|+++.|.|.+.|.|.|.+.|+++|..+..........  ..      ......++|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            4444433 33557789999999999999999999999999887654332211  11      111235689999999999


Q ss_pred             Ce-eEEEEEEcCCeeeEEEEEEE
Q psy670          383 TG-LYKCNIKNFHGELNANLTLN  404 (540)
Q Consensus       383 ~G-~Y~C~a~n~~g~~~~~~~l~  404 (540)
                      .| .|+|.|.|..|.....+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999998888775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=92.46  Aligned_cols=83  Identities=19%  Similarity=0.400  Sum_probs=66.3

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+.+..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+.........+++.  .+|.|.++..+|+|.|+|.|.|.   
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~---   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK--HILIIEGATKADAAEYSVMTTGG---   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTE--EEEEEEEECTTTCSEEEEEETTE---
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCc--cEEEECccccccCEEEEEEEecc---
Confidence            4567889999999999998 56888999999999998776655555555543  37999999999999999999773   


Q ss_pred             eEEEEEEEEE
Q psy670          397 LNANLTLNIE  406 (540)
Q Consensus       397 ~~~~~~l~V~  406 (540)
                       ..++.|.|.
T Consensus        80 -~~~a~l~V~   88 (90)
T d1x44a1          80 -QSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEE
T ss_pred             -eEEEEEEEE
Confidence             445666665

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.2e-12  Score=95.76  Aligned_cols=95  Identities=23%  Similarity=0.427  Sum_probs=73.7

Q ss_pred             eccCCceeecCCCCeEEEEEEecccC---CCeEEEEeCCEEeec---cCceEE--EEecCCCeEEEEEEEeCCCCCCcEE
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKE---SSKIKI--IVNEQDDTYEIICEITDPIGPDSGT  281 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~l~~---~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~  281 (540)
                      |+..|....+.+|+.++|.|.+.|.|   .+.|.|++++.....   ......  ..........+.|.|.+++..|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            45667788899999999999999987   579999998754321   222222  2223445556789999999999999


Q ss_pred             EEEEEEcCCCCeeeeEEEEEeec
Q psy670          282 YRCNVKNEFGESNANLNLNIEAE  304 (540)
Q Consensus       282 y~C~~~~~~~~~~~~~~l~v~~~  304 (540)
                      |+|.|.|..|..+..+.|.|...
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcC
Confidence            99999999999988888988653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.1e-11  Score=94.10  Aligned_cols=97  Identities=24%  Similarity=0.376  Sum_probs=75.5

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccC---CCeEEEEeCCEEeecc---CceEE--EEecCCCeEEEEEEEeCCCCCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKP---RPEVKWFKADKLVKES---SKIKI--IVNEQDDTYEIICEITDPIGPD  278 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~v~W~~~~~~l~~~---~~~~~--~~~~~~~~~~~~l~i~~~~~~d  278 (540)
                      .+.|+..|....+..|++++|.|.+.+.|   .+.|.|++++......   .....  ..........+.|.|.+++..|
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            34567778888999999999999999988   5789999987543221   12221  1222444556789999999999


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEEee
Q psy670          279 SGTYRCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      +|.|+|.|.|..|..+.++.|.|..
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999999998865

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.2e-12  Score=93.41  Aligned_cols=78  Identities=15%  Similarity=0.147  Sum_probs=62.3

Q ss_pred             CccccCCCeEEEEEEEe-ecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          111 PTIHQDGDLLVMECVLE-ASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ...+.+|+++.|.|.+. |.|.+.|.|++++..+..   ...       ....+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~~-------~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~   81 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQS-------DTGRSVLTVRNASLSAAGTRVCVGSCGGRTF   81 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EEE-------ESSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---eec-------cCceeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence            35678999999999984 788999999997765521   111       1112489999999999999999999999998


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      +.++.|.|.
T Consensus        82 ~~s~~l~Vy   90 (90)
T d1gsma1          82 QHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEC
Confidence            999888774

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=101.68  Aligned_cols=88  Identities=22%  Similarity=0.343  Sum_probs=68.6

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCce---------------------------EEEEEecCCee
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRI---------------------------SWNVTLKGDKY  369 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~---------------------------~~~~~~~~~~~  369 (540)
                      .+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+......                           +.......  .
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~   92 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK--D   92 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET--T
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC--C
Confidence            456778899999999999999999999999987665432110                           01111111  2


Q ss_pred             EEEEEEcCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          370 HIRLEVKDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       370 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .++|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            3489999999999999999999999999999998875

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.6e-12  Score=91.82  Aligned_cols=92  Identities=15%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEE--CCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFH--EGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++  ++..........   .........+|.|.++..+|+|.|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C   77 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK---VTSSRRFIASFNVVNTTKRDAGKYRC   77 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE---EEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee---EEEeecCceEEEECCCCHHHCeEEEE
Confidence            46665 4778899999999999999999988654432  222222211111   11222334489999999999999999


Q ss_pred             EEEcCCeeeE-EEEEEEEE
Q psy670          389 NIKNFHGELN-ANLTLNIE  406 (540)
Q Consensus       389 ~a~n~~g~~~-~~~~l~V~  406 (540)
                      .|.|..|... ..+.|.|+
T Consensus        78 ~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          78 MIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEeCCCeEEEEEEEEEEC
Confidence            9999999864 44688763

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.3e-12  Score=94.30  Aligned_cols=83  Identities=20%  Similarity=0.404  Sum_probs=67.2

Q ss_pred             CCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .....+.+|++++|.|.+.+ +.+.+.|+++|..+....+..+...    .   .+|.|.+++.+|.|.|+|.|.|..|.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~----~---~~L~I~~v~~~d~G~Y~C~a~N~~g~   81 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQN----N---SILRIDPIKREDAGEYQCEISNPVSV   81 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETT----T---TEEEECSCCGGGCEEEEEEEESSSCC
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCC----c---eEEEEeccchhhceEEEEEEEeCCCC
Confidence            34556889999999999855 5679999999999988777665432    1   17999999999999999999999887


Q ss_pred             e-EEEEEEEEec
Q psy670          189 S-NANIALNFQG  199 (540)
Q Consensus       189 ~-~~~~~l~v~~  199 (540)
                      . +..+.|.|..
T Consensus        82 ~~S~~~~L~V~~   93 (96)
T d1l6za2          82 RRSNSIKLDIIF   93 (96)
T ss_dssp             EECCCCEEEECC
T ss_pred             eEEEeEEEEEEc
Confidence            6 4568888874

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.29  E-value=9.4e-12  Score=94.55  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             CCeeccC-CceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeecc----CceEE-----EEecCCCeEEEEEEEeCCCC
Q psy670          207 APSFIEK-PRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKES----SKIKI-----IVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       207 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~----~~~~~-----~~~~~~~~~~~~l~i~~~~~  276 (540)
                      .|.+... |....+..|+++.|.|.+.|.|.+.|.|++++......    .....     ............|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            5666554 67889999999999999999999999999976442111    00000     01112234456899999999


Q ss_pred             CCcEEEEEEEEcCCCCeeeeEEEEE
Q psy670          277 PDSGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       277 ~d~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      +|+|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999888888876

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.7e-12  Score=93.57  Aligned_cols=95  Identities=17%  Similarity=0.289  Sum_probs=70.9

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccC-CCeEEEEeCCEEeecc-CceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKP-RPEVKWFKADKLVKES-SKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .++..+....+..|+.+.|.|.+.+.| .|.|+|++++..+... .................|.|.+++.+|+|.|+|.|
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            345667778889999999999999988 5899999988765322 22222222234444568999999999999999999


Q ss_pred             EcCCCCe-eeeEEEEEee
Q psy670          287 KNEFGES-NANLNLNIEA  303 (540)
Q Consensus       287 ~~~~~~~-~~~~~l~v~~  303 (540)
                      .|..|.. +.++.|.|..
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            9998875 3467777653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.3e-12  Score=93.21  Aligned_cols=88  Identities=22%  Similarity=0.377  Sum_probs=69.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+.  .....+.+|+++.|+|.+.+ +.+.+.|+++|..+....+....  .++.    +|.|.+++.+|+|.|+|.|
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~--~~~~----~L~I~~v~~~d~G~Y~C~a   75 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS--QNNS----ILRIDPIKREDAGEYQCEI   75 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE--TTTT----EEEECSCCGGGCEEEEEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc--CCce----EEEEeccchhhceEEEEEE
Confidence            44443  34566889999999999865 56899999999999887766542  2232    7999999999999999999


Q ss_pred             EcCCeeeE-EEEEEEEEE
Q psy670          391 KNFHGELN-ANLTLNIEM  407 (540)
Q Consensus       391 ~n~~g~~~-~~~~l~V~~  407 (540)
                      .|..|... ..+.|.|..
T Consensus        76 ~N~~g~~~S~~~~L~V~~   93 (96)
T d1l6za2          76 SNPVSVRRSNSIKLDIIF   93 (96)
T ss_dssp             ESSSCCEECCCCEEEECC
T ss_pred             EeCCCCeEEEeEEEEEEc
Confidence            99988763 567888876

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2.6e-12  Score=97.85  Aligned_cols=86  Identities=20%  Similarity=0.277  Sum_probs=60.8

Q ss_pred             EeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCC----eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          322 SEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGD----KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+.+|+.+.|.|.+. |.|.+.+.|++++..+...............    ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            577899999999985 7999999999999988654332211100000    01127999999999999999999999997


Q ss_pred             eEE--EEEEEEEE
Q psy670          397 LNA--NLTLNIEM  407 (540)
Q Consensus       397 ~~~--~~~l~V~~  407 (540)
                      ..+  .+.|.|..
T Consensus        93 ~~~s~~v~l~V~~  105 (110)
T d1f97a2          93 AMRSEAAHMDAVE  105 (110)
T ss_dssp             CEECCCEEEEEES
T ss_pred             EEEEEEEEEEEEe
Confidence            755  45555543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.26  E-value=6.3e-12  Score=90.81  Aligned_cols=75  Identities=11%  Similarity=0.245  Sum_probs=58.6

Q ss_pred             eEEeeCCCeEEEEEEEEc-cCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-
Q psy670          320 IRSEQGGKLVVMECKVKA-KPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-  397 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-  397 (540)
                      ...+.+|+.++|.|.+.+ .|.+.+.|++||..+....        .+.    .|.|.+++.+|+|.|+|.|.|..|.. 
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--------~~~----~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNS----DFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--------ECC----CEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--------ccc----ccEECccceeccceEEEEEEeCCCCeE
Confidence            345789999999999975 4556899999998764311        111    68999999999999999999998865 


Q ss_pred             EEEEEEEEE
Q psy670          398 NANLTLNIE  406 (540)
Q Consensus       398 ~~~~~l~V~  406 (540)
                      +..+.|.|.
T Consensus        79 S~~v~itV~   87 (89)
T d1fnla2          79 SETVNITIT   87 (89)
T ss_dssp             CCCEEEEEE
T ss_pred             EeeEEEEEE
Confidence            456777765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.3e-11  Score=90.78  Aligned_cols=91  Identities=20%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEe----ec--cCceEEEEecCCCeEEEEEEEeCCC-CCC
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLV----KE--SSKIKIIVNEQDDTYEIICEITDPI-GPD  278 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l----~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~d  278 (540)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++++...    ..  ..++.+...  .  ..+.|.|.++. .+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~--~--~~~~L~I~~v~~~~D   77 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS--Q--GRSELHIENLNMEAD   77 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE--T--TEEEEEECSCCTTTS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC--C--CEEEEEEeccccccC
Confidence            6777777888889999999999999998877 69999975322    11  122222222  1  12479999998 579


Q ss_pred             cEEEEEEEEcCCCCeeeeEEEEE
Q psy670          279 SGTYRCNVKNEFGESNANLNLNI  301 (540)
Q Consensus       279 ~g~y~C~~~~~~~~~~~~~~l~v  301 (540)
                      +|.|+|.|.|..|.....+.|.|
T Consensus        78 ~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          78 PGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999888888776

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.1e-12  Score=96.07  Aligned_cols=89  Identities=9%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcE-EEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSG-TYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~  285 (540)
                      .|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......      ........|.|.+++.+|.| .|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~------~~~~~~~~L~i~~~~~~d~G~~Y~C~   75 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK------SGGLPSLGLTLANVTSDLNRKNVTCW   75 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC------CCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee------eeeccceeEEEccccccccceEEEEE
Confidence            466666777888999999999999999999999999998766432211      22233357999999999999 79999


Q ss_pred             EEcCCCCeeeeEEEEE
Q psy670          286 VKNEFGESNANLNLNI  301 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v  301 (540)
                      |.|..|....++.|.|
T Consensus        76 a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          76 AENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEETTEECCEEECCCC
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9999998877766654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2e-11  Score=90.17  Aligned_cols=84  Identities=20%  Similarity=0.351  Sum_probs=63.3

Q ss_pred             CccccCCCeEEEEEEEeecCC-CceEEEe-CCEeec-CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          111 PTIHQDGDLLVMECVLEASPM-PDIIWYQ-GTKVIE-DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~-~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ...+.+|+++.|.|.+.|.|. +.+.|++ +|..+. ...+.......    ...++|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec----CcceEEEcccCchhhceEEEEEEEeCCC
Confidence            356789999999999998875 6999999 455543 34444444322    1234899999999999999999999998


Q ss_pred             ee-EEEEEEEEe
Q psy670          188 ES-NANIALNFQ  198 (540)
Q Consensus       188 ~~-~~~~~l~v~  198 (540)
                      .. ...+.|.|.
T Consensus        85 ~~~~~tv~l~V~   96 (97)
T d1epfa1          85 TQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            64 456777764

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.6e-12  Score=99.45  Aligned_cols=84  Identities=18%  Similarity=0.404  Sum_probs=66.8

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC-----------------------------ceEEEEeecCcce
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG-----------------------------RIKMSKKSIGKDT  160 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~  160 (540)
                      ....+.+|+.++|.|.+.|.|.+.+.|++++..+....                             +..+.     ...
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~   91 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE-----TTK   91 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE-----EET
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE-----ECC
Confidence            35578899999999999999999999999876553211                             11111     112


Q ss_pred             EEEEEEEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670          161 YLLRLEINNPTKDDGGNYRCNACNSIGESNANIALNFQ  198 (540)
Q Consensus       161 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  198 (540)
                      ..+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        92 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            34589999999999999999999999999999998885

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-12  Score=92.20  Aligned_cols=74  Identities=20%  Similarity=0.290  Sum_probs=61.6

Q ss_pred             CCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          213 KPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       213 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....                 .+.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-----------------~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-----------------ESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-----------------SCEECCGGGCEEEEEEEEETTEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-----------------eeeccccCCCCEEEEEEEcCCCE
Confidence            3567788899999999999999999999999988765432                 23467788999999999999998


Q ss_pred             eeeeEEEEEee
Q psy670          293 SNANLNLNIEA  303 (540)
Q Consensus       293 ~~~~~~l~v~~  303 (540)
                      .+..+.|.|..
T Consensus        73 ~~~~~~l~V~~   83 (84)
T d2oz4a3          73 VTREVTVNVLS   83 (84)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            88888777753

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.25  E-value=1e-11  Score=89.50  Aligned_cols=75  Identities=16%  Similarity=0.350  Sum_probs=59.8

Q ss_pred             EEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-E
Q psy670          321 RSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-N  398 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  398 (540)
                      ..+.+|+.++|.|.+.+. |.+.+.|+++|..+.....        +.    .|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~--------~~----~l~i~~v~~~dsG~Y~C~a~n~~g~~~S   77 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS--------DP----NFSIPQANHSHSGDYHCTGNIGYTLYSS   77 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS--------CC----EEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc--------cc----ccccCccCHHHCCeEEEEEEeCCCCEEe
Confidence            457799999999999755 5668999999987643211        11    79999999999999999999998865 4


Q ss_pred             EEEEEEEEE
Q psy670          399 ANLTLNIEM  407 (540)
Q Consensus       399 ~~~~l~V~~  407 (540)
                      ..+.|.|..
T Consensus        78 ~~v~l~V~~   86 (88)
T d2fcba2          78 KPVTITVQA   86 (88)
T ss_dssp             CCEEEEECC
T ss_pred             eeEEEEEeC
Confidence            567787765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.24  E-value=6.9e-12  Score=92.23  Aligned_cols=82  Identities=15%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.|...|....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+........... ..    .+|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~-~~----~~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-DE----GSLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT-TS----CCEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecc-cc----eEEEEeccChhcCeEEEEE
Confidence            4677788888899999999999999998865 7999999998876544333222 22    2699999999999999999


Q ss_pred             EEcCCCCe
Q psy670          286 VKNEFGES  293 (540)
Q Consensus       286 ~~~~~~~~  293 (540)
                      |.|..|..
T Consensus        77 a~N~~G~~   84 (94)
T d1biha1          77 AETPAGVA   84 (94)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCEE
Confidence            99999864

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=88.00  Aligned_cols=76  Identities=14%  Similarity=0.360  Sum_probs=60.4

Q ss_pred             eEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee-
Q psy670          320 IRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL-  397 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-  397 (540)
                      ...+.+|+.++|.|.+.+. |...+.|+++|..+.....        ..    .|.|.+++.+|+|.|+|+|.|..+.. 
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~----~l~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NH----NISITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SS----EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cc----eEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence            3457799999999999765 4558999999998865322        11    79999999999999999999988764 


Q ss_pred             EEEEEEEEEE
Q psy670          398 NANLTLNIEM  407 (540)
Q Consensus       398 ~~~~~l~V~~  407 (540)
                      +..+.|.|..
T Consensus        77 S~~v~i~V~~   86 (89)
T d1f2qa2          77 SEPLNITVIK   86 (89)
T ss_dssp             CCCEEEEEEC
T ss_pred             eeeEEEEEEe
Confidence            4567777766

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=7e-12  Score=93.84  Aligned_cols=96  Identities=9%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec--CC--eeEEEEEEcCCCCCCCeeEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK--GD--KYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~--~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      |.+...+....+.+|+++.|.|.+.+.|.|.+.|++++................  ..  ...++|.|.+++.+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            344455566788999999999999999999999998543221100000000000  00  00127999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|..|.....+.|.|.+
T Consensus        82 C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999999887777776654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.1e-13  Score=100.30  Aligned_cols=88  Identities=20%  Similarity=0.319  Sum_probs=64.8

Q ss_pred             eEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEec---CCeeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          320 IRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLK---GDKYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ...+.+|+.++|.|.+. |.|.+.+.|+++|..+.............   .....+.|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            34578899999999985 79999999999999876544322111000   011123799999999999999999999999


Q ss_pred             eeEEEEEEEEEE
Q psy670          396 ELNANLTLNIEM  407 (540)
Q Consensus       396 ~~~~~~~l~V~~  407 (540)
                      ....+..+.|..
T Consensus        91 ~~~~s~~v~v~v  102 (104)
T d1nbqa2          91 TPMTSNAVRMEA  102 (104)
T ss_dssp             CCEECCCBCCEE
T ss_pred             ceEEEEEEEEEE
Confidence            887766665543

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=4.6e-12  Score=93.73  Aligned_cols=89  Identities=18%  Similarity=0.341  Sum_probs=67.7

Q ss_pred             CCCeeccCCceeecCC---CCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670          206 FAPSFIEKPRIIPNES---GTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTY  282 (540)
Q Consensus       206 ~~p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  282 (540)
                      ++|.|...|....+.+   |+.+.|.|.+.|.|.+.+.|+++|..+.............     ..|.|..+..+|+|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-----DLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-----EEEEESCCHHHHCEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-----eEEEEecccccCCEEE
Confidence            4677777777666544   4789999999999999999999999987655443333221     2678888999999999


Q ss_pred             EEEEEcCCCCe-eeeEEE
Q psy670          283 RCNVKNEFGES-NANLNL  299 (540)
Q Consensus       283 ~C~~~~~~~~~-~~~~~l  299 (540)
                      +|.|.|..|.. +..+.|
T Consensus        78 ~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          78 QCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEETTEEEECCCEEE
T ss_pred             EEEEEECCCEEEEEEEEE
Confidence            99999999965 334444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=91.17  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEc-cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKA-KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      |+.+...+....+.+|+.++|+|.+.| .|.+  .+.|++++..+....       .......+.|.|.....+|+|.|+
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~-------~~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-------AVGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-------CCTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc-------cccccceEEEEEeeehhHCCCEEE
Confidence            566666666677889999999999997 5655  578999998875421       123334558999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |+|+|..|.....+.+.+..
T Consensus        77 C~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          77 CRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             EEEEEECGGGTSCEEEEECC
T ss_pred             EEEEeCCCCccCeEeeeEcC
Confidence            99999999887777777765

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-11  Score=88.59  Aligned_cols=87  Identities=17%  Similarity=0.340  Sum_probs=63.8

Q ss_pred             CCeEEeCC-ceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCC-ceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          311 PPTFIEKP-KIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTD-RISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       311 ~p~~~~~~-~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      +|.|+... ....+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+. .+.+.  ..++  ...|.|.++..+|+|.|+|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~--~~~~--~~~L~I~~~~~~D~G~Y~c   79 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE--SIGA--KRTLTISQCSLADDAAYQC   79 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE--EETT--EEEEEECSCSSSSCEEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeee--ccCC--eEEeecCCCCceecEEEEE
Confidence            44444443 34578899999999998 45889999999999987654 33333  2233  2389999999999999999


Q ss_pred             EEEcCCeeeEEEEEEEEE
Q psy670          389 NIKNFHGELNANLTLNIE  406 (540)
Q Consensus       389 ~a~n~~g~~~~~~~l~V~  406 (540)
                      .|.|.    ..+..|.|.
T Consensus        80 ~a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          80 VVGGE----KCSTELFVK   93 (94)
T ss_dssp             EETTE----EECCEEEEE
T ss_pred             EEeeE----EEEEEEEEE
Confidence            99773    445566654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8.1e-12  Score=90.85  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             CCCccccCCCeEEEEEEEeecCC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          109 KKPTIHQDGDLLVMECVLEASPM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .....+.+|+++.|.|.+.+.|. ++|.|+|++..+....+......        .+|.|.+++.+|+|.|+|.+.|..
T Consensus        13 ~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          13 RGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG--------RRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             TTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEES--------SEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCC--------CEEEECCCChhcCEEEEEEECCcc
Confidence            34457788999999999987765 58999999988866544332211        179999999999999999997654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.21  E-value=2e-11  Score=87.97  Aligned_cols=75  Identities=17%  Similarity=0.364  Sum_probs=59.5

Q ss_pred             ccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670          112 TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-  189 (540)
                      ..+.+|++++|.|.+.+. |.+.+.|||+|..+.....          .   ..|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~----------~---~~l~i~~v~~~dsG~Y~C~a~n~~g~~~   76 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS----------D---PNFSIPQANHSHSGDYHCTGNIGYTLYS   76 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS----------C---CEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccccc----------c---cccccCccCHHHCCeEEEEEEeCCCCEE
Confidence            457899999999999654 6668999999987743211          1   179999999999999999999988764 


Q ss_pred             EEEEEEEEec
Q psy670          190 NANIALNFQG  199 (540)
Q Consensus       190 ~~~~~l~v~~  199 (540)
                      +..+.|.|..
T Consensus        77 S~~v~l~V~~   86 (88)
T d2fcba2          77 SKPVTITVQA   86 (88)
T ss_dssp             CCCEEEEECC
T ss_pred             eeeEEEEEeC
Confidence            4667888763

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.20  E-value=2.3e-11  Score=86.84  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=59.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...|....+.+|++++|+|.+.+.|.+. +.|++++..+.....              +|.|.+++.+|+|.|+|+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~i~~~~~~d~G~Y~C~   70 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSGEYRCQ   70 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS--------------EEEESSCCGGGCEEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecce--------------eeEecCCcccCCEEEEEE
Confidence            66777778778899999999999999988875 567888877654332              799999999999999999


Q ss_pred             EEcCCee
Q psy670          390 IKNFHGE  396 (540)
Q Consensus       390 a~n~~g~  396 (540)
                      |.|..++
T Consensus        71 a~~s~~S   77 (84)
T d1fnla1          71 TNLSTLS   77 (84)
T ss_dssp             CSSSCCC
T ss_pred             ccCCCcc
Confidence            9886544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.8e-12  Score=96.01  Aligned_cols=96  Identities=15%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEec--CC--eeEEEEEEcCCCCCCCeeEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLK--GD--KYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~--~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.............  +.  ....+|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            334444556678899999999999999999999999765433211110000000  00  00127999999999999999


Q ss_pred             EEEEcCCeeeEEEEEEEEEE
Q psy670          388 CNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       388 C~a~n~~g~~~~~~~l~V~~  407 (540)
                      |.|.|..|.....+.|.|.+
T Consensus        85 C~a~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             EEEEETTSSCEECCEEECCE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999999987777776643

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.6e-11  Score=90.90  Aligned_cols=86  Identities=15%  Similarity=0.289  Sum_probs=67.1

Q ss_pred             CceEEeeCCCeEEEEEEEE-ccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          318 PKIRSEQGGKLVVMECKVK-AKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      +......+|+.+.|.|.+. +.|.+.|.|+++|..+.............+.    +|.|.+++.+|+|.|+|.|.|..|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~g~   84 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE----KLWFVPAKVEDSGHYYCVVRNSSYC   84 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT----EEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC----EEEeccceecCCEEEEEEEECCCCe
Confidence            4445677899999999886 6789999999998765432221111122233    8999999999999999999999999


Q ss_pred             eEEEEEEEEEE
Q psy670          397 LNANLTLNIEM  407 (540)
Q Consensus       397 ~~~~~~l~V~~  407 (540)
                      ...++.|.|..
T Consensus        85 ~~~~~~L~V~~   95 (101)
T d1iray1          85 LRIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEe
Confidence            99999999876

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.4e-11  Score=88.38  Aligned_cols=85  Identities=18%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEe-------ecCcceEEEEEEEcCCCCCCCe-EEEEEEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKK-------SIGKDTYLLRLEINNPTKDDGG-NYRCNAC  183 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~  183 (540)
                      ..+..|+++.|.|.+.|.|.+.+.|+++|..+...........       ........+.|.|.+++.+|.| .|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            4577899999999999999999999999998865543322211       1122234568999999999999 5999999


Q ss_pred             cCCceeEEEEEEE
Q psy670          184 NSIGESNANIALN  196 (540)
Q Consensus       184 ~~~~~~~~~~~l~  196 (540)
                      |..|.....+.|.
T Consensus        92 N~~G~~~~~i~L~  104 (107)
T d1iray3          92 NTHGIDAAYIQLI  104 (107)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE
Confidence            9999988888775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-11  Score=87.31  Aligned_cols=82  Identities=16%  Similarity=0.271  Sum_probs=60.8

Q ss_pred             CCCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          109 KKPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .....+.+|+++.|.|.+ +.|.+.+.|+++|..+..+.+.......   +...+.|.|.+++.+|+|.|+|.+.|.   
T Consensus         7 l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~---   79 (90)
T d1x44a1           7 LEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV---EGKKHILIIEGATKADAAEYSVMTTGG---   79 (90)
T ss_dssp             CCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEE---ETTEEEEEEEEECTTTCSEEEEEETTE---
T ss_pred             CCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEE---eCCccEEEECccccccCEEEEEEEecc---
Confidence            345678999999999999 5688899999999988665543332221   112358999999999999999999763   


Q ss_pred             eEEEEEEEEe
Q psy670          189 SNANIALNFQ  198 (540)
Q Consensus       189 ~~~~~~l~v~  198 (540)
                       .....|.|.
T Consensus        80 -~~~a~l~V~   88 (90)
T d1x44a1          80 -QSSAKLSVD   88 (90)
T ss_dssp             -EEEEEEEEE
T ss_pred             -eEEEEEEEE
Confidence             334555554

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.18  E-value=1.8e-11  Score=88.29  Aligned_cols=74  Identities=14%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             ccccCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670          112 TIHQDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-  189 (540)
                      ..+.+|++++|.|.+.+ .|.+.+.|||||..+.....             ...|.|.+++.+|+|.|+|.+.|..+.. 
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~-------------~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceecc-------------ccccEECccceeccceEEEEEEeCCCCeE
Confidence            45789999999999864 45568999999987642210             1178999999999999999999988764 


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                      +..+.|+|.
T Consensus        79 S~~v~itV~   87 (89)
T d1fnla2          79 SETVNITIT   87 (89)
T ss_dssp             CCCEEEEEE
T ss_pred             EeeEEEEEE
Confidence            456777775

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.18  E-value=6.3e-12  Score=94.30  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=61.4

Q ss_pred             ceEEeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          319 KIRSEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|+++|..+......+.......+    +|.|.+++.+|+|.|+|.|.|..|..
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG----NLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC----CEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC----EEeecccccccCcEEEEEEEECCCCE
Confidence            45678999999999997 68899999999998876543332222222222    69999999999999999999988876


Q ss_pred             EEEE
Q psy670          398 NANL  401 (540)
Q Consensus       398 ~~~~  401 (540)
                      ..++
T Consensus        88 ~~~v   91 (105)
T d1cs6a2          88 TKSV   91 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.18  E-value=2.2e-11  Score=87.23  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=63.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCC-eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMP-EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCN  389 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  389 (540)
                      +|.+...|....+.+|+.++|.|.+.+.|.+ .+.|+++|..+.....              .|.|..++.+|+|.|+|+
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~--------------~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc--------------ceEEeeccccCCcEEEEE
Confidence            5567777777789999999999999988766 6899999998865443              688899999999999999


Q ss_pred             EEcCCeeeEEEEEEEE
Q psy670          390 IKNFHGELNANLTLNI  405 (540)
Q Consensus       390 a~n~~g~~~~~~~l~V  405 (540)
                      |.|..++.  .+.|.|
T Consensus        70 a~ns~~S~--~v~l~V   83 (85)
T d2fcba1          70 TGQTSLSD--PVHLTV   83 (85)
T ss_dssp             CTTSBCCC--CEEEEE
T ss_pred             CCCCcccc--cEEEEE
Confidence            98875543  345555

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-11  Score=86.86  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=59.9

Q ss_pred             ccccCCCeEEEEEEEeec-CCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee-
Q psy670          112 TIHQDGDLLVMECVLEAS-PMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES-  189 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-  189 (540)
                      ..+.+|+.++|.|.+.+. +...+.|||+|..+......             ..|.|.+++.+|+|.|.|.+.|..+.. 
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~-------------~~l~i~~~~~~dsG~Y~C~a~n~~~~~~   76 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN-------------HNISITNATVEDSGTYYCTGKVWQLDYE   76 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCS-------------SEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccccc-------------ceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence            457899999999999655 45589999999988543211             179999999999999999999987754 


Q ss_pred             EEEEEEEEec
Q psy670          190 NANIALNFQG  199 (540)
Q Consensus       190 ~~~~~l~v~~  199 (540)
                      +..+.|.|..
T Consensus        77 S~~v~i~V~~   86 (89)
T d1f2qa2          77 SEPLNITVIK   86 (89)
T ss_dssp             CCCEEEEEEC
T ss_pred             eeeEEEEEEe
Confidence            5667788775

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.5e-11  Score=88.22  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...+..+.+.+|+++.|.|.+.+.|+ ++|+|+|++..+......... ...      +|.|.+++.+|+|.|+|.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~-~~~------~L~I~~v~~~D~G~Y~C~   78 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-MGR------RLLLRSVQLHDSGNYSCY   78 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-ESS------EEEECSCCGGGCEEEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec-CCC------EEEECCCChhcCEEEEEE
Confidence            677888888889999999999999988664 689999999888665443322 211      799999999999999999


Q ss_pred             EEcCC
Q psy670          286 VKNEF  290 (540)
Q Consensus       286 ~~~~~  290 (540)
                      +.|..
T Consensus        79 a~n~~   83 (93)
T d1n26a1          79 RAGRP   83 (93)
T ss_dssp             SSSSC
T ss_pred             ECCcc
Confidence            97654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.9e-12  Score=96.71  Aligned_cols=96  Identities=17%  Similarity=0.306  Sum_probs=75.6

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEECCEEccCCC--ceEEEEEecCCeeEEEEEEcCCCCCC-CeeE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHEGKELQQTD--RISWNVTLKGDKYHIRLEVKDPRKED-TGLY  386 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y  386 (540)
                      ||.+. .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....  ++............+.|.|.++..+| +|.|
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            55554 4455667899999999999985 456899999998886543  34444444555566789999999998 6999


Q ss_pred             EEEEEcCCeeeEEEEEEEEEE
Q psy670          387 KCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       387 ~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|.|.|..|..+..+.|.|..
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEEECCCeEEEEEEEEEEC
Confidence            999999999999999998875

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.5e-11  Score=92.17  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=59.6

Q ss_pred             ecCCCCeEEEEEEec-ccCCCeEEEEeCCEEeeccCceEEEEecCCC----eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          218 PNESGTLIQMKCKCS-AKPRPEVKWFKADKLVKESSKIKIIVNEQDD----TYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       218 ~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .+.+|+++.|.|.+. +.|.+.+.|++++..+...............    .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            456899999999985 7999999999999887554332211111000    01126889999999999999999999997


Q ss_pred             eee--eEEEEEee
Q psy670          293 SNA--NLNLNIEA  303 (540)
Q Consensus       293 ~~~--~~~l~v~~  303 (540)
                      ...  .+.+.|..
T Consensus        93 ~~~s~~v~l~V~~  105 (110)
T d1f97a2          93 AMRSEAAHMDAVE  105 (110)
T ss_dssp             CEECCCEEEEEES
T ss_pred             EEEEEEEEEEEEe
Confidence            654  44555543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=86.58  Aligned_cols=90  Identities=14%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      ++.+...+....+.+|+.++|.|.+.| +|.+  ++.|++++..+.....       ......++|.|.....+|+|.|+
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~-------~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc-------ccccceEEEEEeeehhHCCCEEE
Confidence            555656666667889999999999986 6655  5889999988854321       33445568999999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEEee
Q psy670          284 CNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v~~  303 (540)
                      |+|.|..|.....+.+.+..
T Consensus        77 C~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          77 CRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             EEEEEECGGGTSCEEEEECC
T ss_pred             EEEEeCCCCccCeEeeeEcC
Confidence            99999998877776666643

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=90.03  Aligned_cols=81  Identities=12%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ...+.+|+++.|.|.+.+ |.|.+.|+++|..+........ .. .++    .|.|.+++.+|+|.|+|.|.|..|....
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~-~~-~~~----~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYG-LM-GRK----NLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBC-CT-TTT----CEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeee-cc-eee----EEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            356889999999999988 7789999999998865433211 11 222    6999999999999999999999887665


Q ss_pred             EEEEEEEE
Q psy670          400 NLTLNIEM  407 (540)
Q Consensus       400 ~~~l~V~~  407 (540)
                      +..|.+..
T Consensus        79 ~~~l~~~~   86 (92)
T d1olza1          79 FQVVAKHV   86 (92)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            55554443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.9e-11  Score=86.75  Aligned_cols=79  Identities=23%  Similarity=0.397  Sum_probs=58.9

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCe-EEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPE-IVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      |.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+.....              .|.|.+++.+|+|.|+|.|
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~i~~v~~~d~G~Y~C~a   67 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------------SLNIVNAKFEDSGEYKCQH   67 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS--------------EEEECSCCGGGCEEEEEEC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccc--------------eeEECCCChhhCCcEEEEe
Confidence            4555566667789999999999999988774 577888887765433              7999999999999999999


Q ss_pred             EcCCeeeEEEEEEEEE
Q psy670          391 KNFHGELNANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~~~~~~l~V~  406 (540)
                      .|..++.  .+.|.|.
T Consensus        68 ~~s~~S~--~v~l~V~   81 (82)
T d1f2qa1          68 QQVNESE--PVYLEVF   81 (82)
T ss_dssp             TTSSCCC--CEEEEEE
T ss_pred             cCCCCcc--cEEEEEE
Confidence            8875543  4555553

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.7e-11  Score=88.39  Aligned_cols=82  Identities=18%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             ccccCCCeEEEEEEE-eecCCCceEEEeCCEeecC--CCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          112 TIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIED--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      .+..+|+.+.|.|.+ .+.|.+.|.|+|+|..+..  .....+....       .+|.|.+++.+|+|.|+|.+.|..|.
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~g~   84 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK-------EKLWFVPAKVEDSGHYYCVVRNSSYC   84 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET-------TEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC-------CEEEeccceecCCEEEEEEEECCCCe
Confidence            456789999999988 4678899999998865432  2222222211       18999999999999999999999999


Q ss_pred             eEEEEEEEEecC
Q psy670          189 SNANIALNFQGG  200 (540)
Q Consensus       189 ~~~~~~l~v~~~  200 (540)
                      ....+.|.|...
T Consensus        85 ~~~~~~L~V~~~   96 (101)
T d1iray1          85 LRIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEEeC
Confidence            999999999853

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.4e-11  Score=90.79  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             eeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccC--ceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEE
Q psy670          209 SFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESS--KIKIIVNEQDD--TYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       209 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .+...+..+.+.+|+++.|.|.+.+.|.+.+.|++.+.......  ...........  ...++|.|.+++.+|+|.|+|
T Consensus         3 sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C   82 (102)
T d1f97a1           3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTC   82 (102)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEE
T ss_pred             CEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEE
Confidence            44555667788899999999999999999999998543321110  00000000111  111269999999999999999


Q ss_pred             EEEcCCCCeeeeEEEEEee
Q psy670          285 NVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       285 ~~~~~~~~~~~~~~l~v~~  303 (540)
                      .+.|..|.....+.+.|.+
T Consensus        83 ~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          83 MVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEETTSSSEEEEEEEEEE
T ss_pred             EEEECCCCEEEEEEEEEEE
Confidence            9999999887777666653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.12  E-value=6.5e-12  Score=90.85  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=66.1

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+.+..+.+|+++.|.|.+ +.|.+.+.|+++|..+..+.++.+..  .++.  .+|.|.++..+|+|.|+|.|.|..+ 
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~--~~~~--~~L~I~~~~~~D~G~Y~c~a~n~~~-   80 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIE--DGKK--HILILHNCQLGMTGEVSFQAANAKS-   80 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEE--CSSC--EEEECCSCCSCCCSEECCBCSSCBC-
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEe--ecee--EEEEEcCCChhcCEEEEEEECceEE-
Confidence            4567889999999999997 57889999999999998888776643  3332  3899999999999999999977543 


Q ss_pred             eEEEEEEEEEE
Q psy670          397 LNANLTLNIEM  407 (540)
Q Consensus       397 ~~~~~~l~V~~  407 (540)
                         ++.|.|.+
T Consensus        81 ---sa~l~V~e   88 (89)
T d1tiua_          81 ---AANLKVKE   88 (89)
T ss_dssp             ---CEEEEEEC
T ss_pred             ---EEEEEEEE
Confidence               45666653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=85.51  Aligned_cols=91  Identities=16%  Similarity=0.347  Sum_probs=63.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEe--CCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFK--ADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRC  284 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  284 (540)
                      .|.|. .+.+..+.+|+++.|.|.+.|.|.+.+.|++  ++........... .  .......+|.|.++..+|+|.|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~L~I~~v~~~D~G~Y~C   77 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV-T--SSRRFIASFNVVNTTKRDAGKYRC   77 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEE-E--ETTEEEEEEEECSCCGGGCSEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeE-E--EeecCceEEEECCCCHHHCeEEEE
Confidence            56675 4778889999999999999998877654332  2222222111111 1  123344579999999999999999


Q ss_pred             EEEcCCCCee-eeEEEEE
Q psy670          285 NVKNEFGESN-ANLNLNI  301 (540)
Q Consensus       285 ~~~~~~~~~~-~~~~l~v  301 (540)
                      .|.|..|... ..+.|.|
T Consensus        78 ~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          78 MIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            9999999754 4356665

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.6e-12  Score=94.85  Aligned_cols=94  Identities=17%  Similarity=0.278  Sum_probs=65.6

Q ss_pred             CeeccCCceeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCceEEEEecC---CCeEEEEEEEeCCCCCCcEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKIKIIVNEQ---DDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      |.+........+.+|+.++|.|.+ .+.|.+.+.|++++..+.............   .....+.|.|.+++.+|.|.|+
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~   82 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS   82 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEE
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEE
Confidence            333333334456789999999998 479999999999998876544322211111   1111236899999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEE
Q psy670          284 CNVKNEFGESNANLNLNI  301 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v  301 (540)
                      |.|.|..|....+..+.|
T Consensus        83 C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          83 CEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEECSSSCCEECCCBCC
T ss_pred             EEEEECCCceEEEEEEEE
Confidence            999999998766544443

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.11  E-value=3.1e-11  Score=90.45  Aligned_cols=79  Identities=18%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             CCCccccCCCeEEEEEEE-eecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          109 KKPTIHQDGDLLVMECVL-EASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..++.+.+|+++.|.|.+ .+.|.+.+.|+|+|..+...........  ..+.   +|.|.+++.+|+|.|+|.|.|..|
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~---~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS--QTTG---NLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC--TTTC---CEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee--cCCC---EEeecccccccCcEEEEEEEECCC
Confidence            345679999999999997 7889999999999876543222111111  1111   799999999999999999999877


Q ss_pred             eeEEE
Q psy670          188 ESNAN  192 (540)
Q Consensus       188 ~~~~~  192 (540)
                      .....
T Consensus        86 ~~~~~   90 (105)
T d1cs6a2          86 FITKS   90 (105)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            65544

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.9e-11  Score=87.08  Aligned_cols=69  Identities=22%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             ccccCCCeEEEEE------EEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          112 TIHQDGDLLVMEC------VLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       112 ~~v~~G~~v~l~C------~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ..+..|....|.|      .+.+.|.|.+.|++||+++..+........     .   .|.|.++..+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~-----~---~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-----D---RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEET-----T---EEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecC-----C---EEEEcccccccCcEEEEEEEEC
Confidence            4577899999999      456889999999999999976654433221     1   7999999999999999999986


Q ss_pred             Cce
Q psy670          186 IGE  188 (540)
Q Consensus       186 ~~~  188 (540)
                      .+.
T Consensus        81 ~~g   83 (103)
T d1iray2          81 YLG   83 (103)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=85.75  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=58.2

Q ss_pred             EEeeCCCeEEEEE------EEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          321 RSEQGGKLVVMEC------KVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       321 ~~~~~g~~v~l~C------~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ..+..|....|.|      .+.++|.|.|.|++||.++..+.....   ..++    .|.|.++..+|+|.|+|.|.|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~---~~~~----~L~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS---GVKD----RLIVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEE---EETT----EEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEE---ecCC----EEEEcccccccCcEEEEEEEECc
Confidence            4577899999999      567899999999999999976554322   1222    79999999999999999999977


Q ss_pred             eeeEEE
Q psy670          395 GELNAN  400 (540)
Q Consensus       395 g~~~~~  400 (540)
                      |....+
T Consensus        82 ~g~~~~   87 (103)
T d1iray2          82 LGKQYP   87 (103)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            654333

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-11  Score=91.75  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEec-CCCe---EEEEEEEeCCCCCCcEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNE-QDDT---YEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~  283 (540)
                      +.+...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+............ ....   ...+|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            33444555677889999999999999999999999976544332211111111 0110   1137999999999999999


Q ss_pred             EEEEcCCCCeeeeEEEEEe
Q psy670          284 CNVKNEFGESNANLNLNIE  302 (540)
Q Consensus       284 C~~~~~~~~~~~~~~l~v~  302 (540)
                      |.|.|..|.....+.+.|.
T Consensus        85 C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEETTSSCEECCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999988777666654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.3e-11  Score=87.45  Aligned_cols=76  Identities=14%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNA  191 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~  191 (540)
                      ..+.+|+++.|.|.+.+ |.+.+.|+++|..+.........    ..+.   +|.|.+++.+|+|.|+|.|.|..+....
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~----~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL----MGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC----TTTT---CEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeec----ceee---EEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            46789999999999977 67899999999887554322111    1111   6999999999999999999998776544


Q ss_pred             EEEE
Q psy670          192 NIAL  195 (540)
Q Consensus       192 ~~~l  195 (540)
                      ...+
T Consensus        79 ~~~l   82 (92)
T d1olza1          79 FQVV   82 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.6e-10  Score=84.43  Aligned_cols=68  Identities=16%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+. +..+...     ...+.|.|.++..+|+|.|+|.|.|.
T Consensus        16 ~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI-----GAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEE-----TTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             EEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeecc-----CCeEEeecCCCCceecEEEEEEEeeE
Confidence            357899999999998 55888999999999986543 3444322     22348999999999999999999663

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.08  E-value=1.5e-11  Score=88.83  Aligned_cols=79  Identities=14%  Similarity=0.073  Sum_probs=63.2

Q ss_pred             CCccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee
Q psy670          110 KPTIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES  189 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~  189 (540)
                      ....+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+.++.+....     ..+.|.|.+++.+|+|.|+|.+.|..+  
T Consensus         9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~n~~~--   80 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAANAKS--   80 (89)
T ss_dssp             CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECS-----SCEEEECCSCCSCCCSEECCBCSSCBC--
T ss_pred             cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeec-----eeEEEEEcCCChhcCEEEEEEECceEE--
Confidence            45678899999999998 6788999999999999888887775432     234899999999999999999876543  


Q ss_pred             EEEEEEEEe
Q psy670          190 NANIALNFQ  198 (540)
Q Consensus       190 ~~~~~l~v~  198 (540)
                        ++.|.|.
T Consensus        81 --sa~l~V~   87 (89)
T d1tiua_          81 --AANLKVK   87 (89)
T ss_dssp             --CEEEEEE
T ss_pred             --EEEEEEE
Confidence              3445544

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.04  E-value=2e-10  Score=81.99  Aligned_cols=79  Identities=16%  Similarity=0.366  Sum_probs=61.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCC-eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRP-EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...|....+.+|+.++|.|.+.+.|.+ .+.|+++|..+.....              .|.|.+++.+|+|.|+|.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~--------------~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS--------------SEEEEECCGGGCEEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc--------------ceEEeeccccCCcEEEEE
Confidence            4556666777788899999999999987765 6899999988765432              588999999999999999


Q ss_pred             EEcCCCCeeeeEEEEE
Q psy670          286 VKNEFGESNANLNLNI  301 (540)
Q Consensus       286 ~~~~~~~~~~~~~l~v  301 (540)
                      +.|..++  ..+.|.|
T Consensus        70 a~ns~~S--~~v~l~V   83 (85)
T d2fcba1          70 TGQTSLS--DPVHLTV   83 (85)
T ss_dssp             CTTSBCC--CCEEEEE
T ss_pred             CCCCccc--ccEEEEE
Confidence            9876443  3344444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.04  E-value=2.8e-10  Score=80.96  Aligned_cols=71  Identities=20%  Similarity=0.385  Sum_probs=57.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCN  285 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  285 (540)
                      .|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+.....              .|.|.+++.+|+|.|+|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~i~~~~~~d~G~Y~C~   70 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSGEYRCQ   70 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCS--------------EEEESSCCGGGCEEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecce--------------eeEecCCcccCCEEEEEE
Confidence            45666677777888999999999999987765 677888877654322              689999999999999999


Q ss_pred             EEcCCC
Q psy670          286 VKNEFG  291 (540)
Q Consensus       286 ~~~~~~  291 (540)
                      +.+...
T Consensus        71 a~~s~~   76 (84)
T d1fnla1          71 TNLSTL   76 (84)
T ss_dssp             CSSSCC
T ss_pred             ccCCCc
Confidence            987544

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.7e-11  Score=92.88  Aligned_cols=96  Identities=16%  Similarity=0.316  Sum_probs=73.1

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEeccc-CCCeEEEEeCCEEeeccC--ceEEEEecCCCeEEEEEEEeCCCCCC-cEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAK-PRPEVKWFKADKLVKESS--KIKIIVNEQDDTYEIICEITDPIGPD-SGTY  282 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y  282 (540)
                      ||.+. .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....  ++.+..........+.|.|.++...| +|.|
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            55554 4455677889999999999985 556799999998886543  33333333344455689999999998 6999


Q ss_pred             EEEEEcCCCCeeeeEEEEEee
Q psy670          283 RCNVKNEFGESNANLNLNIEA  303 (540)
Q Consensus       283 ~C~~~~~~~~~~~~~~l~v~~  303 (540)
                      +|.|.|..|..+..+.|.|..
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCSC
T ss_pred             EEEEEECCCeEEEEEEEEEEC
Confidence            999999999988888887754

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.6e-10  Score=81.84  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=56.8

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCe-EEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPE-VKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      |.|...|....+.+|+.++|.|.+.+.|.+. +.|++++..+.....              .|.|.+++.+|+|.|+|.+
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~i~~v~~~d~G~Y~C~a   67 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS--------------SLNIVNAKFEDSGEYKCQH   67 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS--------------EEEECSCCGGGCEEEEEEC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccc--------------eeEECCCChhhCCcEEEEe
Confidence            4555566667788999999999999987764 678888887754322              6899999999999999999


Q ss_pred             EcCCCCeeeeEEEEE
Q psy670          287 KNEFGESNANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v  301 (540)
                      .+..+  +..+.|.|
T Consensus        68 ~~s~~--S~~v~l~V   80 (82)
T d1f2qa1          68 QQVNE--SEPVYLEV   80 (82)
T ss_dssp             TTSSC--CCCEEEEE
T ss_pred             cCCCC--cccEEEEE
Confidence            87544  33445554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1e-10  Score=87.48  Aligned_cols=88  Identities=13%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             CceEEeeCCCeEEEEEEEEc-cC--CCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKA-KP--MPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~-~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      +....+.+|+.++|+|.+.| +|  .+.|.|+++|..+........  ........+.|.+.....+|.|.|+|+|.|..
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~--~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA--APAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS--TTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE--eecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            33446779999999999987 44  458999999998864322111  11233445678888888888889999999998


Q ss_pred             eeeEEEEEEEEEE
Q psy670          395 GELNANLTLNIEM  407 (540)
Q Consensus       395 g~~~~~~~l~V~~  407 (540)
                      +.....+.+.+..
T Consensus        87 ~~~~~~~~~~~s~   99 (106)
T d1zxqa1          87 MSRGGNIFHKHSA   99 (106)
T ss_dssp             GGGTCCEEEEECC
T ss_pred             CCCCCeeEecccC
Confidence            7665555555543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=6.1e-09  Score=80.85  Aligned_cols=88  Identities=20%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             CCccccCCCeEEEEEEEeecC---CCceEEEeCCEee-----c------------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          110 KPTIHQDGDLLVMECVLEASP---MPDIIWYQGTKVI-----E------------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .++.+.+|++++|.|.+....   ...+.|++.+...     .            ...+..+..  .......++|.|.+
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~   87 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK--ESIGEGKVALRIQN   87 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEEC--TTGGGTEEEEEESS
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEee--ccccCCeEEEEEEE
Confidence            456778999999999985432   2358999864311     0            011222221  11223356999999


Q ss_pred             CCCCCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          170 PTKDDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      ++.+|+|.|.|.+.+..+.....+.|.|.+
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999999888888888899874

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.88  E-value=4.5e-10  Score=84.54  Aligned_cols=80  Identities=21%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             EeeCCCeEEEEEEE-EccCCCeEEEEECCEEccCCCce-----EEEEEecCCeeEEEEEEcCCCCCCCe---eEEEEEEc
Q psy670          322 SEQGGKLVVMECKV-KAKPMPEIVWFHEGKELQQTDRI-----SWNVTLKGDKYHIRLEVKDPRKEDTG---LYKCNIKN  392 (540)
Q Consensus       322 ~~~~g~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~n  392 (540)
                      .+.+|+.+.|.|.+ .|.|.|.+.|++++..+......     ......++     +|.|.+++.+|+|   .|.|.|.|
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS-----CEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc-----ccEEeeeEeeccCCceEEEEEEEe
Confidence            46689999999996 89999999999987765432211     11111222     6899999888776   79999999


Q ss_pred             CCeeeEEEEEEEEE
Q psy670          393 FHGELNANLTLNIE  406 (540)
Q Consensus       393 ~~g~~~~~~~l~V~  406 (540)
                      ..|.....+.+.+.
T Consensus        88 ~~g~~~~~~~~~~i  101 (111)
T d1biha2          88 AAVDEEVVLVEYEI  101 (111)
T ss_dssp             TTCSSCEEEEEEEE
T ss_pred             CCCCceEEEEEEEe
Confidence            99988766544443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.1e-09  Score=81.70  Aligned_cols=86  Identities=9%  Similarity=0.115  Sum_probs=61.7

Q ss_pred             CceeecCCCCeEEEEEEecc-cC--CCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          214 PRIIPNESGTLIQMKCKCSA-KP--RPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~-~p--~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      +....+.+|+.++|.|.+.| +|  .+++.|++++..+........  ........+.|.+.....+|.|.|+|+|.|+.
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~--~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA--APAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS--TTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE--eecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            33445778999999999986 54  457999999998865432211  11333455678888888889999999999988


Q ss_pred             CCeeeeEEEEE
Q psy670          291 GESNANLNLNI  301 (540)
Q Consensus       291 ~~~~~~~~l~v  301 (540)
                      +.....+.+.+
T Consensus        87 ~~~~~~~~~~~   97 (106)
T d1zxqa1          87 MSRGGNIFHKH   97 (106)
T ss_dssp             GGGTCCEEEEE
T ss_pred             CCCCCeeEecc
Confidence            76655555554

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=4.6e-08  Score=75.69  Aligned_cols=88  Identities=16%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             eEEeeCCCeEEEEEEEEccC---CCeEEEEECCEEc-----------cC----CCceEEEEEec-CCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKP---MPEIVWFHEGKEL-----------QQ----TDRISWNVTLK-GDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p---~~~i~W~~~~~~~-----------~~----~~~~~~~~~~~-~~~~~~~L~i~~~~~  380 (540)
                      .+.+..|++++|.|.+....   ...+.|++.+...           ..    ....+...... ......+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            46778999999999986433   3368999864321           00    00111111111 111245899999999


Q ss_pred             CCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          381 EDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      +|+|.|.|.+.+..+.....+.|.|.+
T Consensus        91 ~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999998888888888876

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.8e-09  Score=76.89  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcce-----EEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDT-----YLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      +....|++|+|.|.. +.|.+.+.|++++..+.................     ...+|+|.+++.+|+|.|.|.+.+..
T Consensus         5 v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            456789999999987 568889999998876532111111111110110     11379999999999999999998876


Q ss_pred             ceeE
Q psy670          187 GESN  190 (540)
Q Consensus       187 ~~~~  190 (540)
                      +...
T Consensus        84 ~t~~   87 (93)
T d1ccza1          84 DTMK   87 (93)
T ss_dssp             SCEE
T ss_pred             cEEE
Confidence            6554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.6e-09  Score=77.05  Aligned_cols=81  Identities=12%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             eEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEE--------EecCCeeEEEEEEcCCCCCCCeeEEEEEE
Q psy670          320 IRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNV--------TLKGDKYHIRLEVKDPRKEDTGLYKCNIK  391 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  391 (540)
                      .+....|++|+|.|.+ ..|.+.|.|++++..+..........        ..+..  ..+|.|.+++.+|+|.|+|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTV--SGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTT--TCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCC--eeEEEEEecChhhCEEEEEEEE
Confidence            3567789999999986 46888999999987664211111110        00111  1279999999999999999998


Q ss_pred             cCCeeeEEEEEEEE
Q psy670          392 NFHGELNANLTLNI  405 (540)
Q Consensus       392 n~~g~~~~~~~l~V  405 (540)
                      |..+...  +.|.|
T Consensus        81 n~~~t~~--~~l~V   92 (93)
T d1ccza1          81 NITDTMK--FFLYV   92 (93)
T ss_dssp             TCCSCEE--EEEEE
T ss_pred             CCCcEEE--EEEEE
Confidence            8776554  44444

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.74  E-value=5.6e-10  Score=84.00  Aligned_cols=81  Identities=20%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             eeecCCCCeEEEEEEe-cccCCCeEEEEeCCEEeeccCce-----EEEEecCCCeEEEEEEEeCCCCCCcE---EEEEEE
Q psy670          216 IIPNESGTLIQMKCKC-SAKPRPEVKWFKADKLVKESSKI-----KIIVNEQDDTYEIICEITDPIGPDSG---TYRCNV  286 (540)
Q Consensus       216 ~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~l~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~  286 (540)
                      ..++.+|+.+.|.|.+ .|+|.+.+.|++++..+......     .......     .+|.|.+++..|+|   .|.|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~v~~~D~gd~g~Y~C~A   85 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD-----GNLYFTIVTKEDVSDIYKYVCTA   85 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT-----SCEEEEEECGGGCCSSEEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc-----cccEEeeeEeeccCCceEEEEEE
Confidence            4456789999999997 78999999999987665433211     1111111     15888888887766   799999


Q ss_pred             EcCCCCeeeeEEEEE
Q psy670          287 KNEFGESNANLNLNI  301 (540)
Q Consensus       287 ~~~~~~~~~~~~l~v  301 (540)
                      .|..|.....+.+.+
T Consensus        86 ~N~~g~~~~~~~~~~  100 (111)
T d1biha2          86 KNAAVDEEVVLVEYE  100 (111)
T ss_dssp             ECTTCSSCEEEEEEE
T ss_pred             EeCCCCceEEEEEEE
Confidence            999987765544333

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=4.3e-08  Score=71.51  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             cccCCCeEEEEEEEe-ec-CCCceEEEeCCEeecC---CCceEEEE--eecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          113 IHQDGDLLVMECVLE-AS-PMPDIIWYQGTKVIED---TGRIKMSK--KSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~-~~-p~~~v~W~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ....|++|+|.|... .. ....|.|++++..+..   ........  .....+   .+|+|.+++.+|+|.|+|.+.+.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC---ccEEEeCCCHHHCEEEEEEEEeC
Confidence            445799999999642 22 2237999998876631   11100000  000011   27999999999999999999988


Q ss_pred             Ccee--EEEEEEEEe
Q psy670          186 IGES--NANIALNFQ  198 (540)
Q Consensus       186 ~~~~--~~~~~l~v~  198 (540)
                      .|..  ...+.|.|.
T Consensus        83 ~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          83 NGTRILNKALDLRIL   97 (98)
T ss_dssp             TCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
Confidence            8875  566777765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.5e-08  Score=72.02  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=55.5

Q ss_pred             EEeeCCCeEEEEEEEEcc--CCCeEEEEECCEEccCC---Cce-----EEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          321 RSEQGGKLVVMECKVKAK--PMPEIVWFHEGKELQQT---DRI-----SWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +....|++|+|.|.....  ....|.|++++..+...   ...     +.....++     +|.|.+++.+|+|.|+|.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng-----SL~I~nl~~~DsG~Y~c~v   79 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-----DLKIKNLTRDDSGTYNVTV   79 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-----CEEESSCCGGGCEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc-----cEEEeCCCHHHCEEEEEEE
Confidence            456689999999963222  22479999988766321   000     01111112     7999999999999999999


Q ss_pred             EcCCeee--EEEEEEEEE
Q psy670          391 KNFHGEL--NANLTLNIE  406 (540)
Q Consensus       391 ~n~~g~~--~~~~~l~V~  406 (540)
                      .+..|..  .+++.|.|.
T Consensus        80 ~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          80 YSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EETTCCEEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEEE
Confidence            9998876  566667664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.4e-07  Score=69.92  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecC-------------------CCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIED-------------------TGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+|++|.|.|.........+.|+|+......                   ..|..+.     .+   .+|.|.+++.
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-----~n---gSL~I~~v~~   80 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SN---GSLLFQMITM   80 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-----TT---SCEEECSCCG
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-----cc---ccEEEcCCCc
Confidence            3466999999999753333458999996532110                   1122221     11   2799999999


Q ss_pred             CCCeEEEEEEEcCCce-eEEEEEEEE
Q psy670          173 DDGGNYRCNACNSIGE-SNANIALNF  197 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~~-~~~~~~l~v  197 (540)
                      +|+|.|+|.+.+..+. ....+.|+|
T Consensus        81 ~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          81 KDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             hhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999877543 444555554

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.3e-08  Score=70.03  Aligned_cols=71  Identities=17%  Similarity=0.329  Sum_probs=47.3

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEe--ecCC------------CceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKV--IEDT------------GRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +...+|++|+|.|.........+.|++....  +...            .+.....  ........+|.|.+++.+|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--SLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCG--GGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEe--ccCCCCEEEEEECCCChHHCEE
Confidence            4567899999999986666668999985332  1111            1111111  1112223479999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+.+
T Consensus        82 Y~C~v~~   88 (97)
T d2nxyb1          82 YICEVED   88 (97)
T ss_dssp             EEEEETT
T ss_pred             EEEEEec
Confidence            9999965

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.1e-07  Score=71.60  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=56.8

Q ss_pred             CccccCCCeEEEEEEEeecCCC----ceEEEeCCEeecC---------------------CCceEEEEeecCcceEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP----DIIWYQGTKVIED---------------------TGRIKMSKKSIGKDTYLLRL  165 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~----~v~W~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~L  165 (540)
                      .+.+.+|++++|.|.+...+..    .+.|++.......                     ..+..+....  .....++|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL   90 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND--LKSGDASI   90 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSC--GGGTBCCE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccC--CCCCEEEE
Confidence            3567799999999998654332    5899873111000                     1122221111  11223479


Q ss_pred             EEcCCCCCCCeEEEEEEEcCCceeEEEEEEEEe
Q psy670          166 EINNPTKDDGGNYRCNACNSIGESNANIALNFQ  198 (540)
Q Consensus       166 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~  198 (540)
                      +|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        91 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          91 NVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999999888877777777774

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.7e-07  Score=67.64  Aligned_cols=87  Identities=14%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             CCccccCCCeEEEEEEEeec---CCCceEEEeCCEe-----e---------cCCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          110 KPTIHQDGDLLVMECVLEAS---PMPDIIWYQGTKV-----I---------EDTGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+.+|++|+|.|.....   ....+.|+|....     +         ....+..+....   .....+|.|.+++.
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I~~l~~   83 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP---ENGTFVVNIAQLSQ   83 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET---TTTEEEEEECSCCG
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeC---CCCEEEEEEhhhCc
Confidence            34677899999999987422   2235789884211     1         112333333222   22235899999999


Q ss_pred             CCCeEEEEEEEcCCceeEEEEEEEEec
Q psy670          173 DDGGNYRCNACNSIGESNANIALNFQG  199 (540)
Q Consensus       173 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~  199 (540)
                      +|+|.|.|.+..........+.|+|.+
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            999999999875554455667787764

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=8e-07  Score=66.13  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             eeCCCeEEEEEEEEc-cCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee---
Q psy670          323 EQGGKLVVMECKVKA-KPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE---  396 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---  396 (540)
                      +.+|+.++|+|.+.+ +|.+  .|.|++++..+............+.....+.|.+.....+|...|+|+|+|..+.   
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            668999999999986 6754  6899999987643211110001112233456777765555555899999988643   


Q ss_pred             ----eEEEEEEEEEE
Q psy670          397 ----LNANLTLNIEM  407 (540)
Q Consensus       397 ----~~~~~~l~V~~  407 (540)
                          ......|.|..
T Consensus        93 ~~~~~~t~~~L~V~~  107 (109)
T d1vcaa1          93 VPTVRQAVKELQVYI  107 (109)
T ss_dssp             SCSEEEEEEECCEEC
T ss_pred             cccccceeEEeEEEe
Confidence                23344566654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4e-07  Score=69.99  Aligned_cols=87  Identities=20%  Similarity=0.329  Sum_probs=57.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCC----CeEEEEECCEEccCC-----------------Cc--eEEEEEec-CCeeEEEEEE
Q psy670          320 IRSEQGGKLVVMECKVKAKPM----PEIVWFHEGKELQQT-----------------DR--ISWNVTLK-GDKYHIRLEV  375 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~----~~i~W~~~~~~~~~~-----------------~~--~~~~~~~~-~~~~~~~L~i  375 (540)
                      .+.+.+|+++.|.|.+...+.    ..+.|++........                 ..  .+.....+ ......+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            456789999999999875433    258898732111000                 00  01111100 0111237999


Q ss_pred             cCCCCCCCeeEEEEEEcCCeeeEEEEEEEEE
Q psy670          376 KDPRKEDTGLYKCNIKNFHGELNANLTLNIE  406 (540)
Q Consensus       376 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  406 (540)
                      .+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999999888888888875

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=8.2e-07  Score=66.07  Aligned_cols=74  Identities=23%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             cCCCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          219 NESGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      +.+|+.++|.|.+.+ +|.+  .+.|++++..+..................+.|.+.....++...|+|+|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            568999999999976 7755  6899999988754321111111122333456777655555666999999987543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.8e-07  Score=67.25  Aligned_cols=89  Identities=16%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CCceEEeeCCCeEEEEEEEEcc---CCCeEEEEECCEEc--------------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAK---PMPEIVWFHEGKEL--------------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      .|..+.+.+|++++|.|.....   ....+.|++....-              ....+..+.  ........+|.|.+++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT--NFPENGTFVVNIAQLS   82 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEE--EETTTTEEEEEECSCC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEe--eeCCCCEEEEEEhhhC
Confidence            4556778899999999986432   23457898732110              011223232  2223334589999999


Q ss_pred             CCCCeeEEEEEEcCCeeeEEEEEEEEEE
Q psy670          380 KEDTGLYKCNIKNFHGELNANLTLNIEM  407 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  407 (540)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             cCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            9999999999876554455566777654

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.3e-06  Score=59.05  Aligned_cols=75  Identities=11%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             cCCCeEEEEEEEee-cCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          115 QDGDLLVMECVLEA-SPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       115 ~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      ..|+.++|.|.+.| +|.+.|.|+++|..+.............+.....+.|.|..   .+...|+|.+.+........
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcEE
Confidence            35778999999976 69889999999988865543333333334455556787763   35679999999876554433

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=6.5e-07  Score=66.19  Aligned_cols=78  Identities=10%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             eeCCCeEEEEEEEEccCCCeEEEEECCEEccCC---------------C--ceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          323 EQGGKLVVMECKVKAKPMPEIVWFHEGKELQQT---------------D--RISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      +.+|++|.|.|.........+.|+|+.......               .  .-+.....++     +|.|.+++.+|+|.
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng-----SL~I~~v~~~D~G~   85 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMITMKDMGV   85 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS-----CEEECSCCGGGCEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc-----cEEEcCCCchhCEE
Confidence            568999999997433335589999865422110               0  0111111121     79999999999999


Q ss_pred             EEEEEEcCCe-eeEEEEEEEE
Q psy670          386 YKCNIKNFHG-ELNANLTLNI  405 (540)
Q Consensus       386 Y~C~a~n~~g-~~~~~~~l~V  405 (540)
                      |+|.+.+..+ ....++.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            9999988764 4555666655

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.3e-06  Score=59.97  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|.. .+..|+.|+|.|... .....+.|+++|........     ........+.+.|.+++.+|+|.|.|..
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-----ccCCCccEEEEEEeeeecCCCceEEEEe
Confidence            5666666654 467999999999863 34567899998864432111     0111223447999999999999999998


Q ss_pred             EcCCeee--EEEEEEEE
Q psy670          391 KNFHGEL--NANLTLNI  405 (540)
Q Consensus       391 ~n~~g~~--~~~~~l~V  405 (540)
                      .+..+..  +..+.|.|
T Consensus        77 ~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          77 RVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             EETTEECCCCCCEEEEE
T ss_pred             CCCCCccCCCCCEEEEE
Confidence            8876654  33444544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.7e-06  Score=62.99  Aligned_cols=88  Identities=11%  Similarity=0.029  Sum_probs=56.4

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|.. .+..|+.|+|.|.+. .+...+.|+++|..........   ..........+.|.+++.+|+|.|.|..
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~---~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRR---LKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEE---CC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecccc---ccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            6777777754 577899999999864 3455788988764221111100   0111112237899999999999999999


Q ss_pred             EcCCeeeEEEEEE
Q psy670          391 KNFHGELNANLTL  403 (540)
Q Consensus       391 ~n~~g~~~~~~~l  403 (540)
                      .+.......+-.|
T Consensus        82 ~~~~~~S~~Sdpl   94 (99)
T d1ucta1          82 RIGHYRFRYSDTL   94 (99)
T ss_dssp             EETTTEEEECCCE
T ss_pred             ECCCcccCCCCCE
Confidence            8876654444333

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=3.1e-06  Score=63.38  Aligned_cols=77  Identities=18%  Similarity=0.429  Sum_probs=52.9

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEc------c------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KEL------Q------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~------~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++-.  ...      .      ...++.  ..........+|.|.+++.+
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYT--ATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEE--ECBCSSSSEEEEEECSCCGG
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccc--eeecCcccccccEEcccChh
Confidence            3466777889999999999877666789999732  110      0      011121  22223334568999999999


Q ss_pred             CCeeEEEEEEcCC
Q psy670          382 DTGLYKCNIKNFH  394 (540)
Q Consensus       382 d~G~Y~C~a~n~~  394 (540)
                      |+|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999998753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.1e-06  Score=60.11  Aligned_cols=78  Identities=9%  Similarity=-0.017  Sum_probs=52.2

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~  190 (540)
                      .|..|+.|+|.|.. ......+.|+|+|.........      .......+.+.|.+++..|+|.|+|...+.....  +
T Consensus        14 ~V~~G~~VTL~C~~-~~~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~S   86 (95)
T d1olla1          14 MVPKEKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   86 (95)
T ss_dssp             EEETTCCEEEEEEC-CTTCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             cccCCCcEEEEEec-CCCccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCC
Confidence            57799999999986 3455689999988643211100      0112223489999999999999999987654432  4


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        87 d~leL~V   93 (95)
T d1olla1          87 NLLDLVV   93 (95)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            4455544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.8e-07  Score=64.27  Aligned_cols=80  Identities=8%  Similarity=-0.018  Sum_probs=50.7

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCcee--E
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGES--N  190 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~  190 (540)
                      .|..|+.|+|.|.. ..+...+.|+|+|............    ......+.+.|.+++..|+|.|.|...+.....  +
T Consensus        17 ~V~~G~~VTL~C~~-~~~~~~f~l~k~g~~~~~~~~~~~~----~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~S   91 (99)
T d1ucta1          17 VIPLDGSVKIQCQA-IREAYLTQLMIIKNSTYREIGRRLK----FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS   91 (99)
T ss_dssp             EEETTCCEEEEECC-CTTCSEEEEEEEETTEEEECSEECC--------CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred             ceeCCCeEEEEEcC-CCCCcEEEEEECCCcCceecccccc----CCCCceEEEEecCCCHHHCceEEEEEECCCcccCCC
Confidence            57789999999987 3566689999876422111111000    011122379999999999999999988765433  3


Q ss_pred             EEEEEEE
Q psy670          191 ANIALNF  197 (540)
Q Consensus       191 ~~~~l~v  197 (540)
                      ..+.|.|
T Consensus        92 dpl~L~V   98 (99)
T d1ucta1          92 DTLELVV   98 (99)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEe
Confidence            3444443

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.8e-05  Score=58.98  Aligned_cols=77  Identities=17%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEEC--CE-E--c----------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHE--GK-E--L----------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~--~~-~--~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ..|..+.+.+|++++|.|..... ....+.|++-  |. +  +          ....++..  ..........|.|.+++
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~--~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI--IQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEE--EECTTSSEEEEEESSCC
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceE--EEeCCCCEEEEEECccC
Confidence            34667788999999999998653 3457899972  21 1  1          11223332  22333334589999999


Q ss_pred             CCCCeeEEEEEEcCC
Q psy670          380 KEDTGLYKCNIKNFH  394 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~~  394 (540)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          82 RNDSGIYLCGAISLH   96 (114)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999987543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=5.6e-06  Score=61.94  Aligned_cols=78  Identities=13%  Similarity=0.296  Sum_probs=51.4

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+..+.+.+|++++|.|.........+.|++.  |....            ...++......  ......|.|.+++.
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~   82 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK--SSSSFHLQKSSAQL   82 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBG--GGTBCCEEESSCCG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccC--CCCeEEeecccccc
Confidence            3345667788999999999988766678999973  21110            01122222111  11223799999999


Q ss_pred             CCCeeEEEEEEcCC
Q psy670          381 EDTGLYKCNIKNFH  394 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~  394 (540)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          83 SDSALYYCALFLAS   96 (115)
T ss_dssp             GGCEEEEEEEEECS
T ss_pred             ccCccceEEEEcCC
Confidence            99999999876543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.11  E-value=3.8e-06  Score=62.94  Aligned_cols=72  Identities=13%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+.+.+|++++|.|.........+.|||.  |+.   +         ....++......   ......|.|.+++.+|+|
T Consensus        10 ~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK---SSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBG---GGTBCCEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccC---CCCeEEeeccccccccCc
Confidence            35688999999999997666678999983  211   1         011222222211   112237999999999999


Q ss_pred             EEEEEEEcC
Q psy670          177 NYRCNACNS  185 (540)
Q Consensus       177 ~Y~C~~~~~  185 (540)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999988654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.11  E-value=9.4e-06  Score=59.50  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=49.8

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--C--EEcc----------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--G--KELQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~--~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++-  |  ..+.          ...++..  ...+.  ...|.|.++..+
T Consensus         5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~--~~s~~--~~~L~I~~~~~~   80 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRG--SGSGR--DYSFSISNLEPE   80 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEETT--EEEEEECSCCGG
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEe--ecCCC--EeeeEehhhccc
Confidence            345667788999999999886655556999982  1  1110          1122222  22222  348999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+.+.
T Consensus        81 DsA~YyCa~~~~   92 (106)
T d1a0ql1          81 DIATYYCLQYYN   92 (106)
T ss_dssp             GCSEEEEEECSS
T ss_pred             CCEeEEEEEeCC
Confidence            999999987654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.09  E-value=1.1e-05  Score=60.39  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEE--CCEEc---c------------CCCceEEEEEecCCeeEEEEEEcC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFH--EGKEL---Q------------QTDRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~--~~~~~---~------------~~~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      ..|....+.+|++++|.|..... ....+.|++  .|...   .            ...++....  +.......|+|.+
T Consensus         5 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~   82 (116)
T d1tvda_           5 QSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKH--ILTQKAFHLVISP   82 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEE--EGGGTEEEEEESS
T ss_pred             ccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEe--cCceeEEeeeecC
Confidence            34556778899999999998653 456799987  12111   0            112332222  2223345899999


Q ss_pred             CCCCCCeeEEEEEEcCC
Q psy670          378 PRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~n~~  394 (540)
                      ++.+|+|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999887654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=7.9e-06  Score=61.84  Aligned_cols=91  Identities=12%  Similarity=0.127  Sum_probs=52.4

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc----CCCeEEEEECC--E----Ec---------c-CCCc--eEEEEEecCCeeEEEE
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK----PMPEIVWFHEG--K----EL---------Q-QTDR--ISWNVTLKGDKYHIRL  373 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~----p~~~i~W~~~~--~----~~---------~-~~~~--~~~~~~~~~~~~~~~L  373 (540)
                      ..|..+.+..|++++|.|.....    ....+.|++..  .    .+         . ....  .+.....+......+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34566788899999999997632    23478998721  1    00         0 0000  0111111111112379


Q ss_pred             EEcCCCCCCCeeEEEEEEcCCee--eEEEEEEEEE
Q psy670          374 EVKDPRKEDTGLYKCNIKNFHGE--LNANLTLNIE  406 (540)
Q Consensus       374 ~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~  406 (540)
                      .|.+++.+|+|.|.|.+.+..+.  ....++|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999886433  3344555553

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=7.2e-06  Score=61.16  Aligned_cols=79  Identities=20%  Similarity=0.432  Sum_probs=53.0

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE--c----------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE--L----------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~--~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...|..+.+.+|++++|.|...+.....+.|++-  |..  +          ....++....  ........|.|.++..
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL--DKSSGRSTLYIAASQP   81 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEE--ETTTTEEEEEESSCCG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeee--ccCCCEEEeeeecCCC
Confidence            3446677888999999999987665567899982  211  1          0111222222  2223345899999999


Q ss_pred             CCCeeEEEEEEcCCe
Q psy670          381 EDTGLYKCNIKNFHG  395 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~g  395 (540)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          82 GDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGCEEEEEEEEESSS
T ss_pred             CCCcEEeEeEecCCC
Confidence            999999999875543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=3.7e-06  Score=63.78  Aligned_cols=85  Identities=16%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             CccccCCCeEEEEEEEeec----CCCceEEEeCC--E----ee-c---------C----CCceEEEEeecCcceEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEAS----PMPDIIWYQGT--K----VI-E---------D----TGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~----p~~~v~W~~~~--~----~~-~---------~----~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .+.+..|++++|.|.+...    ....+.|++..  .    .+ .         .    ..|..+.....   ...++|.
T Consensus         8 ~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~   84 (119)
T d1neua_           8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS---WKDGSIV   84 (119)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGG---GTBCCEE
T ss_pred             eEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECC---CCEEEEE
Confidence            4567899999999998432    23379998721  1    01 0         0    01222221111   1123799


Q ss_pred             EcCCCCCCCeEEEEEEEcCCc--eeEEEEEEEEe
Q psy670          167 INNPTKDDGGNYRCNACNSIG--ESNANIALNFQ  198 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~  198 (540)
                      |.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            999999999999999987543  23445666654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=7.7e-06  Score=61.84  Aligned_cols=79  Identities=19%  Similarity=0.340  Sum_probs=52.7

Q ss_pred             CeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc---------C-CCc----------eEEEE-EecCCe
Q psy670          312 PTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ---------Q-TDR----------ISWNV-TLKGDK  368 (540)
Q Consensus       312 p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~---------~-~~~----------~~~~~-~~~~~~  368 (540)
                      |.+...|....+.+|++++|.|.+.+.....+.|++-  |..+.         . ...          .++.. ...+  
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--   79 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN--   79 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT--
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC--
Confidence            4555567778889999999999998877778999871  22110         0 000          01111 1112  


Q ss_pred             eEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          369 YHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       369 ~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      ...+|.|.+++.+|+|.|.|.+..
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEeC
Confidence            234899999999999999998753

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.2e-05  Score=57.14  Aligned_cols=68  Identities=15%  Similarity=0.378  Sum_probs=43.4

Q ss_pred             eCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEec-CCeeE--EEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          324 QGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLK-GDKYH--IRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ..++.++|.|.+.|+ |.. .|.|++||..+............+ .+.+.  +.|.+.   ..+...|+|.+.+..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~---~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP---PGEEQRYTCQVEHPG   85 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC---TTCGGGEEEEEECTT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            356778999999994 544 899999999986532221222222 22232  345543   345668999999874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.06  E-value=2.8e-05  Score=57.72  Aligned_cols=76  Identities=21%  Similarity=0.478  Sum_probs=52.6

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEcc--CCCeEEEEEC--CE----EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHE--GK----ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~--~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      ...|..+...+|++++|+|...+.  ....+.|++.  +.    .+....++.....  .......|.|.+++.+|+|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN--KGSKSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE--TTTTEEEEEECSCCGGGCEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeE--CCCCceeeeecccccCCcceE
Confidence            344666778899999999999753  3456899972  22    2233444443332  223345899999999999999


Q ss_pred             EEEEEc
Q psy670          387 KCNIKN  392 (540)
Q Consensus       387 ~C~a~n  392 (540)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            999854

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1e-06  Score=63.98  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=46.1

Q ss_pred             EEeeCCCeEEEEEEEEccCCCeEEEEECCEE--ccCCCce----------EEEEEe-cCCeeEEEEEEcCCCCCCCeeEE
Q psy670          321 RSEQGGKLVVMECKVKAKPMPEIVWFHEGKE--LQQTDRI----------SWNVTL-KGDKYHIRLEVKDPRKEDTGLYK  387 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~--~~~~~~~----------~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~  387 (540)
                      +...+|++++|.|.........+.|++....  +......          +..... .......+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            4567899999999987666678999985331  1111100          000000 00111237999999999999999


Q ss_pred             EEEEc
Q psy670          388 CNIKN  392 (540)
Q Consensus       388 C~a~n  392 (540)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99966

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=1.1e-05  Score=59.05  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=49.9

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|....+.+|++++|.|.........+.|++.  |...            ....++..  ...++  ...|.|.++..+
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~--~~~~~--~~~L~I~~~~~~   81 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSS--SGTGT--DFVFTIENTLSE   81 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeE--eCCCC--eeeecccCCccc
Confidence            345667788999999999876555557999972  2211            01223322  22222  348999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+.+.
T Consensus        82 Dsa~YyCa~~~~   93 (106)
T d1i8ka_          82 DVGDYYCLQSFN   93 (106)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCEEEeEecCcc
Confidence            999999986543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.9e-05  Score=58.35  Aligned_cols=74  Identities=22%  Similarity=0.346  Sum_probs=47.5

Q ss_pred             ceEEeeCCCeEEEEEEEEcc--CCCeEEEEECCE--E---c---------cCCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAK--PMPEIVWFHEGK--E---L---------QQTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ..+.+.+|++++|.|.....  ....+.|++...  .   +         ....+..+..  +.......|.|.+++.+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD--DPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE--ETTTTEEEEEECSCCGGG
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeee--eCCCCEEEEEEhhhCCCC
Confidence            34567899999999987543  234678987321  1   0         0112232222  222234589999999999


Q ss_pred             CeeEEEEEEcCC
Q psy670          383 TGLYKCNIKNFH  394 (540)
Q Consensus       383 ~G~Y~C~a~n~~  394 (540)
                      +|.|.|.+....
T Consensus        82 sG~Y~C~v~~~~   93 (108)
T d1hkfa_          82 SGHYWCRIYRPS   93 (108)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEecCC
Confidence            999999987544

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.5e-05  Score=58.85  Aligned_cols=72  Identities=17%  Similarity=0.341  Sum_probs=46.4

Q ss_pred             ccccCCCeEEEEEEEeec--CCCceEEEeCC--Ee---e---------cCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEAS--PMPDIIWYQGT--KV---I---------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~--p~~~v~W~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      +...+|++++|.|.....  ....+.|+|..  ..   +         ....+..+...   ......+|.|.+++.+|+
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDD---PDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEE---TTTTEEEEEECSCCGGGC
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeee---CCCCEEEEEEhhhCCCCC
Confidence            456799999999987433  22357899832  11   1         01123333222   122345899999999999


Q ss_pred             eEEEEEEEcCC
Q psy670          176 GNYRCNACNSI  186 (540)
Q Consensus       176 G~Y~C~~~~~~  186 (540)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999987544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.00  E-value=2.9e-05  Score=57.32  Aligned_cols=75  Identities=17%  Similarity=0.446  Sum_probs=52.1

Q ss_pred             CCceEEeeCCCeEEEEEEEEcc--CCCeEEEEEC------CEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEE
Q psy670          317 KPKIRSEQGGKLVVMECKVKAK--PMPEIVWFHE------GKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKC  388 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~------~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  388 (540)
                      .|..+....|++++|.|...+.  ....+.|++.      ...+....++.......  .....|.|.+++.+|+|.|.|
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~--~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSG--SKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETT--TTEEEEEECSCCGGGCEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecC--CceeeeEecCCcCccCEEEeE
Confidence            3556678899999999988643  3467999982      12233344444433322  234589999999999999999


Q ss_pred             EEEcC
Q psy670          389 NIKNF  393 (540)
Q Consensus       389 ~a~n~  393 (540)
                      .+...
T Consensus        83 A~~~~   87 (112)
T d1sq2n_          83 GLGVA   87 (112)
T ss_dssp             EECBT
T ss_pred             EEecC
Confidence            87654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.00  E-value=1.2e-05  Score=57.58  Aligned_cols=66  Identities=21%  Similarity=0.481  Sum_probs=43.8

Q ss_pred             CCeEEEEEEEeecCCCceEEEeC--CEe---e---c-----CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          117 GDLLVMECVLEASPMPDIIWYQG--TKV---I---E-----DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       117 G~~v~l~C~~~~~p~~~v~W~~~--~~~---~---~-----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      |++|+|.|.........+.|||.  ++.   +   .     ...++.....   ......+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~---~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN---KASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec---CCCCEEeEEeeccccCcCccceeeEe
Confidence            78999999987666678999982  211   1   1     1122222211   11223589999999999999999987


Q ss_pred             cC
Q psy670          184 NS  185 (540)
Q Consensus       184 ~~  185 (540)
                      ..
T Consensus        78 ~~   79 (94)
T d2gj6d1          78 TD   79 (94)
T ss_dssp             SS
T ss_pred             cC
Confidence            53

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=8.4e-06  Score=59.37  Aligned_cols=76  Identities=12%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEE-EEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEEE
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWN-VTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNAN  400 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~-~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  400 (540)
                      .+..++|.|.+.++ |. ..|.|.++|..+......... ...++. ...+.|.|..-.......|+|.|.+......++
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~kt   98 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT   98 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEeeE
Confidence            46678999999985 43 379999999987643221111 112232 234578887666666788999999976554443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=1.2e-05  Score=60.12  Aligned_cols=77  Identities=16%  Similarity=0.311  Sum_probs=50.9

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---cc--C--------CCceEEEEEecCCeeEEEEEEcCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---LQ--Q--------TDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~~--~--------~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ...+..+.+.+|+.++|.|.........+.|++-  |..   +.  .        ..++.....  .......|.|.++.
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFK--KSETSFHLTKPSAH   81 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECB--GGGTBCCEEESSCC
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEEC--CCCCEEEEeecccc
Confidence            3346677889999999999987666667999972  211   10  0        011111111  11122379999999


Q ss_pred             CCCCeeEEEEEEcC
Q psy670          380 KEDTGLYKCNIKNF  393 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~  393 (540)
                      .+|+|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          82 MSDAAEYFCAVSES   95 (115)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             ccCCccceeeecCC
Confidence            99999999998764

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.9e-05  Score=55.98  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..|+.++|.|.+.|+ |.. .++|.++|..+.............+.....+.|.+.   .++.+.|+|.+.+..-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDSM   87 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCCC
Confidence            457889999999885 443 799999999887654443444444444455566665   4456789999988653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.5e-05  Score=60.19  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE------e-ec-c--Cce----------EEEEecCCCeE
Q psy670          208 PSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL------V-KE-S--SKI----------KIIVNEQDDTY  265 (540)
Q Consensus       208 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~------l-~~-~--~~~----------~~~~~~~~~~~  265 (540)
                      |.+...|..+.+.+|++++|.|.+.+.....+.|++.  +..      + .. .  ...          ........ ..
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~   80 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT-NN   80 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET-TT
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC-CC
Confidence            5566667788889999999999998776778999882  221      1 00 0  000          00000000 11


Q ss_pred             EEEEEEeCCCCCCcEEEEEEEEc
Q psy670          266 EIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       266 ~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      ...|+|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            24799999999999999997753

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.98  E-value=1.2e-05  Score=57.91  Aligned_cols=70  Identities=16%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             eeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          323 EQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      +..|+.++|.|.+.|+ | ...|.|++||..+.............++.+  .+.|.+.   .++.+.|+|++.+..-
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl   87 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWGL   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEECCC
Confidence            4568889999999996 3 347999999988865322111111222222  3355554   3456789999998753

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.6e-05  Score=54.34  Aligned_cols=71  Identities=13%  Similarity=0.324  Sum_probs=49.4

Q ss_pred             CCCCeEEEEEEecc-cCCCeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCCCee
Q psy670          220 ESGTLIQMKCKCSA-KPRPEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFGESN  294 (540)
Q Consensus       220 ~~g~~~~l~C~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  294 (540)
                      ..++.++|.|.+.| +|.+.|.|+++|..+....... .....++.+  .+.|.+..   .+...|+|.+.+..-...
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~-~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV-SQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEE-EECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceee-EecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCc
Confidence            45788999999988 7988999999998886544332 233333444  35666653   356799999998755443

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=6.9e-06  Score=61.39  Aligned_cols=72  Identities=22%  Similarity=0.462  Sum_probs=49.3

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeCC--Ee---e---c-C-----CCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQGT--KV---I---E-D-----TGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~--~~---~---~-~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.|||..  ..   +   . .     ..++....   .......+|.|.+++.+|+|
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL---DADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB---CSSSSEEEEEECSCCGGGCS
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee---cCcccccccEEcccChhhCc
Confidence            356789999999999876666789999832  11   1   0 0     11222211   22234568999999999999


Q ss_pred             EEEEEEEcC
Q psy670          177 NYRCNACNS  185 (540)
Q Consensus       177 ~Y~C~~~~~  185 (540)
                      .|.|.+...
T Consensus        86 ~Y~Ca~~~~   94 (114)
T d2cdea1          86 SYICVVSDR   94 (114)
T ss_dssp             EEEEEEECS
T ss_pred             ccceeeecC
Confidence            999999864

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2e-05  Score=58.73  Aligned_cols=72  Identities=15%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeC--CE-e--e----------cCCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQG--TK-V--I----------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~--~~-~--~----------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|.+.+. ....+.|||.  |+ +  +          ....++......   ......|.|.+++.+|
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNILDTRRND   84 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEESSCCGGG
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC---CCCEEEEEECccCcCC
Confidence            3568899999999998543 3446899982  22 1  1          112333333221   2223589999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999988654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.96  E-value=3.8e-05  Score=56.67  Aligned_cols=76  Identities=21%  Similarity=0.439  Sum_probs=52.2

Q ss_pred             cCCceeecCCCCeEEEEEEecc--cCCCeEEEEeC--C----EEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEE
Q psy670          212 EKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKA--D----KLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYR  283 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~--~----~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  283 (540)
                      ..|..+...+|++++|.|...+  .....+.||+.  |    ..+....++.........  ...|.|.+++.+|+|.|.
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~--~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSK--SFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTT--EEEEEECSCCGGGCEEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCc--eeeeEecCCcCccCEEEe
Confidence            3456677889999999998864  34567999982  1    222333344443333222  358999999999999999


Q ss_pred             EEEEcC
Q psy670          284 CNVKNE  289 (540)
Q Consensus       284 C~~~~~  289 (540)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            977643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.96  E-value=1.5e-05  Score=58.38  Aligned_cols=68  Identities=21%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CE-ee---c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TK-VI---E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~-~~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++++|.|.........+.||+.  |. +.   .        ...++....     .....+|.|.+++.+|+|.
T Consensus        10 l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~L~I~~~~~~DsA~   84 (106)
T d1a0ql1          10 LSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG-----SGRDYSFSISNLEPEDIAT   84 (106)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGGCSE
T ss_pred             EEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec-----CCCEeeeEehhhcccCCEe
Confidence            4578999999999986555557999982  21 11   0        112222221     1123489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1a0ql1          85 YYCLQYY   91 (106)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.7e-05  Score=57.12  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..|+.++|.|.+.|+ |.. .+.|.+||..+..........+..+.....+.|.+.   .++.+.|+|.+.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCC
Confidence            568889999999886 444 799999999986544333344444444445567765   4457789999998653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.95  E-value=1e-05  Score=60.56  Aligned_cols=72  Identities=19%  Similarity=0.385  Sum_probs=47.5

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e---cC-------CCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I---ED-------TGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~---~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      .+.+.+|++++|.|.........+.|||.  |+.   +   ..       ..+......   .......|.|.+++.+|+
T Consensus         9 ~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFK---KSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECB---GGGTBCCEEESSCCGGGC
T ss_pred             eEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEEC---CCCCEEEEeeccccccCC
Confidence            45688999999999986655567999982  221   1   00       011111111   111123799999999999


Q ss_pred             eEEEEEEEcC
Q psy670          176 GNYRCNACNS  185 (540)
Q Consensus       176 G~Y~C~~~~~  185 (540)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.95  E-value=1.2e-05  Score=58.93  Aligned_cols=69  Identities=22%  Similarity=0.363  Sum_probs=46.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.|||.  |+..          .  ...++....  .+   ...+|.|.+++.+|+|
T Consensus        10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~~---~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--TG---TDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ET---TEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--CC---CeeeecccCCccccCE
Confidence            34578999999999886555557999972  3221          0  112332221  11   1348999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99998654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.94  E-value=1.5e-05  Score=57.35  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             cCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          219 NESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      +..|+..+|.|.+.++ | ...|+|+++|..+...........+.++.+  .+.|.+..   .+.+.|+|++.+..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP---SDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            4568889999999994 4 357999999988764322111122233333  33454443   45668999999864

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.3e-06  Score=62.48  Aligned_cols=75  Identities=21%  Similarity=0.368  Sum_probs=48.4

Q ss_pred             CCCccccCCCeEEEEEEEee--cCCCceEEEeC--CEe---ec--C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          109 KKPTIHQDGDLLVMECVLEA--SPMPDIIWYQG--TKV---IE--D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       109 ~~~~~v~~G~~v~l~C~~~~--~p~~~v~W~~~--~~~---~~--~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .....+.+|++++|.|.+.+  .....+.|+|.  +..   +.  .          .+++.+..+   ......+|+|.+
T Consensus         6 e~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~Lti~~   82 (113)
T d1smoa_           6 EEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDY---HDHGLLRVRMVN   82 (113)
T ss_dssp             EEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEE---TTTTEEEEEECS
T ss_pred             cCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEE---CCCCEEEEEEcc
Confidence            34467889999999998853  34457899983  211   10  0          012222221   122335899999


Q ss_pred             CCCCCCeEEEEEEEcCC
Q psy670          170 PTKDDGGNYRCNACNSI  186 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~  186 (540)
                      ++.+|+|.|.|.+....
T Consensus        83 l~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          83 LQVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             CCGGGCEEEEEEECCTT
T ss_pred             CCcccCceEEEEEECCC
Confidence            99999999999986543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.92  E-value=3.2e-05  Score=57.70  Aligned_cols=75  Identities=15%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEE--CCEE---cc---CC-------CceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFH--EGKE---LQ---QT-------DRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~--~~~~---~~---~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      .+..+.+.+|++++|.|.........+.|++  .|..   +.   ..       ..........  .....|.|.+++.+
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKS--NSSFHLRKASVHWS   83 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTT--TTBCCEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCc--CCEEEEeccccccc
Confidence            4456778999999999998766666788997  2211   10   00       1111111111  22337999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.92  E-value=3.4e-05  Score=56.46  Aligned_cols=76  Identities=20%  Similarity=0.411  Sum_probs=49.6

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---cc-------CCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---LQ-------QTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      ..|....+.+|++++|.|.........+.|++-  +..   +.       ...........++  ....|.|.+++.+|+
T Consensus         6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG--TDFTLTISSLEPEDF   83 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS--SEEEEEECSCCTTCC
T ss_pred             ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC--CEEEeEeeeeEeccc
Confidence            345667788999999999987655567999872  111   00       0111111222222  245899999999999


Q ss_pred             eeEEEEEEcC
Q psy670          384 GLYKCNIKNF  393 (540)
Q Consensus       384 G~Y~C~a~n~  393 (540)
                      |.|.|.+.+.
T Consensus        84 a~YyCA~~~~   93 (108)
T d1jhll_          84 AMYICQQHNE   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEeeCCC
Confidence            9999976553

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.91  E-value=3e-05  Score=57.67  Aligned_cols=79  Identities=18%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             eccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE--e----------eccCceEEEEecCCCeEEEEEEEeCCC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL--V----------KESSKIKIIVNEQDDTYEIICEITDPI  275 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~--l----------~~~~~~~~~~~~~~~~~~~~l~i~~~~  275 (540)
                      +...|..+.+.+|++++|.|...+.....+.|++.  +..  .          ....+.........  ....|.|.+++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS--GRSTLYIAASQ   80 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTT--TEEEEEESSCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCC--CEEEeeeecCC
Confidence            34556677888999999999987765557999982  221  1          01122222222222  24589999999


Q ss_pred             CCCcEEEEEEEEcCC
Q psy670          276 GPDSGTYRCNVKNEF  290 (540)
Q Consensus       276 ~~d~g~y~C~~~~~~  290 (540)
                      .+|+|.|.|.+....
T Consensus        81 ~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          81 PGDSATYLCAVRPTS   95 (113)
T ss_dssp             GGGCEEEEEEEEESS
T ss_pred             CCCCcEEeEeEecCC
Confidence            999999999887543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.7e-05  Score=57.86  Aligned_cols=74  Identities=11%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ..+.+++|.|.+.++ |.. .|.|+++|..+.............+.....+.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEe
Confidence            355779999999884 555 79999999998654333333333344445567888776555667899999987643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.91  E-value=5.5e-05  Score=56.06  Aligned_cols=76  Identities=21%  Similarity=0.383  Sum_probs=52.7

Q ss_pred             ccCCceeecCCCCeEEEEEEecc--cCCCeEEEEeC--CE----EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEE
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSA--KPRPEVKWFKA--DK----LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTY  282 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~--~~----~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  282 (540)
                      ...|..+...+|++++|.|...+  .....+.|++.  +.    .+....++........  ....|+|.+++.+|+|.|
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~Dsa~Y   81 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS--KSFSLRISDLRVEDSGTY   81 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT--TEEEEEECSCCGGGCEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC--CceeeeecccccCCcceE
Confidence            34566778889999999999865  34557999972  22    2223344444433332  235799999999999999


Q ss_pred             EEEEEc
Q psy670          283 RCNVKN  288 (540)
Q Consensus       283 ~C~~~~  288 (540)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.91  E-value=1.6e-05  Score=59.40  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEe--CCEe---e-c---CC------CceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQ--GTKV---I-E---DT------GRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~---~-~---~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      .+.+.+|++++|.|.........+.|||  .|+.   + .   ..      .+......   .......|.|.+++.+|+
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~Ds   85 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFS---KSNSSFHLRKASVHWSDS   85 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECB---TTTTBCCEEESSCCGGGC
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEe---CcCCEEEEeccccccccc
Confidence            3578899999999998665566789998  2221   1 0   00      11111111   111124799999999999


Q ss_pred             eEEEEEEEcC
Q psy670          176 GNYRCNACNS  185 (540)
Q Consensus       176 G~Y~C~~~~~  185 (540)
                      |.|.|.+...
T Consensus        86 g~YyCa~~~~   95 (115)
T d1i9ea_          86 AVYFCAVSGF   95 (115)
T ss_dssp             EEEEEEEEET
T ss_pred             ceecccccCC
Confidence            9999987643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=2.5e-05  Score=57.04  Aligned_cols=73  Identities=19%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++.  |...            ....++..  ...++  ...|.|.+++.+
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~L~I~~l~~~   81 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSG--SRSGS--DYSLTISSLESE   81 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEe--cccCC--EEEEEEhhhccc
Confidence            345667788999999999987666667999972  2211            01122222  22222  348999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=2.3e-05  Score=57.53  Aligned_cols=74  Identities=22%  Similarity=0.403  Sum_probs=50.0

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++.  |..+            ....++..  ...+.  ...|.|.+++.+
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~--~~~~~--~~~L~I~~~~~~   81 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSG--SGSGT--DFTLSINSVETE   81 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCccee--cccCC--EEEEEEcccCcC
Confidence            345667788999999999876555567999972  2111            01123332  22232  348999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+.+.
T Consensus        82 Dsa~YyCa~~~~   93 (107)
T d1j1pl_          82 DFGMYFCQQANS   93 (107)
T ss_dssp             GCEEEEEEECSS
T ss_pred             CCEEEEEEcCCC
Confidence            999999976543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=1.7e-05  Score=58.18  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++|+|.|...+.....+.|||.  |...          .  ...++....     ....+.|.|.+++.+|+|.
T Consensus        11 ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~-----~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1          11 FSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD-----SGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-----SSSSEEEEESSCCGGGCSE
T ss_pred             EEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec-----CCCeEEeEEcccccccCCc
Confidence            4678999999999986555557999982  2211          0  112332221     1112489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=2.4e-05  Score=57.30  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc----------c--CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL----------Q--QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|....+.+|++++|.|...+.....+.|++-  |...          .  ...++..  ...+  ....|.|.+++.+
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~--~~~~--~~~~L~I~~~~~~   81 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSG--SDSG--KDYTLSITSLQTE   81 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--ECSS--SSEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccce--ecCC--CeEEeEEcccccc
Confidence            345667788999999999987655557999982  1110          0  1122322  2222  2348999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1ospl1          82 DVATYFCQQYW   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCCcEEEeecc
Confidence            99999998754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.90  E-value=3e-05  Score=56.92  Aligned_cols=74  Identities=20%  Similarity=0.410  Sum_probs=50.3

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---c-------c--CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---L-------Q--QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...|....+.+|++|+|.|.........+.|++-  +..   +       .  ...++..  .....  ...|.|.+++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~L~I~~l~~   80 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTG--SGSAT--DFTLTISSVQA   80 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCG
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEe--eccCC--eeecEEHhhee
Confidence            3456677788999999999987665567999972  111   1       0  1122222  22222  34899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+..
T Consensus        81 ~DSa~YyCa~~~   92 (107)
T d1kcvl1          81 DDDADYYCGQSY   92 (107)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cCCceEEEEecC
Confidence            999999998654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.88  E-value=2.6e-05  Score=58.28  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             eccCCceeecCCCCeEEEEEEecc-cCCCeEEEEe--CCE-E--ee------------ccCceEEEEecCCCeEEEEEEE
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFK--ADK-L--VK------------ESSKIKIIVNEQDDTYEIICEI  271 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~--~~~-~--l~------------~~~~~~~~~~~~~~~~~~~l~i  271 (540)
                      +...+..+.+.+|++++|.|.... .....+.|++  .+. +  +.            ...++......  ......|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I   80 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL--TQKAFHLVI   80 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG--GGTEEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecC--ceeEEeeee
Confidence            344566777889999999999854 4556799997  221 1  10            01122222222  122357999


Q ss_pred             eCCCCCCcEEEEEEEEcCC
Q psy670          272 TDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       272 ~~~~~~d~g~y~C~~~~~~  290 (540)
                      .+++.+|+|.|.|.+....
T Consensus        81 ~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          81 SPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             SSCCGGGCEEEEEEEECTT
T ss_pred             cCccccccccceeeEecCC
Confidence            9999999999999877543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.4e-05  Score=57.38  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=49.0

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccC-CCeEEEEECC--EE---c-------------cCCCceEEEEEecCCeeEEEEEEc
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKP-MPEIVWFHEG--KE---L-------------QQTDRISWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~~--~~---~-------------~~~~~~~~~~~~~~~~~~~~L~i~  376 (540)
                      ..|....+.+|++++|.|.+.... ...+.|++-.  ..   +             ....+.++.....+.  ...|.|.
T Consensus         5 ~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~--~~~L~I~   82 (114)
T d1akjd_           5 VSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD--TFVLTLS   82 (114)
T ss_dssp             EECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT--EEEEEES
T ss_pred             ECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC--ChhcEEc
Confidence            345666788999999999986543 4568999821  10   0             000111122222232  3489999


Q ss_pred             CCCCCCCeeEEEEEEcC
Q psy670          377 DPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~  393 (540)
                      +++.+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998643

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.9e-05  Score=56.88  Aligned_cols=70  Identities=14%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             eeCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          323 EQGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ...|+.++|.|.+.|+ |.. .|.|.+||..+............++.. ..+.|.+.   .++.+.|+|.+.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCC
Confidence            3568899999999996 433 789999999986433222222223322 23345553   4566789999998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=3.6e-05  Score=55.45  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             eCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          324 QGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..|+.++|.|.+.|+ |. ..|+|.++|..+............++.. ..+.|.+.   .++.+.|+|++.+..-
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDSM   87 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTTS
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCCC
Confidence            467889999999995 43 3789999999887543322222222221 22345553   4566789999998753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=3.8e-05  Score=56.23  Aligned_cols=73  Identities=18%  Similarity=0.393  Sum_probs=47.8

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CE---Ecc-------CCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GK---ELQ-------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      |..+.+.+|++++|.|.........+.|++-  |.   .+.       .....++....++.  ...|.|.+++.+|+|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~--~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGT--DFTLTIDPVEADDTAI   84 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCC--EEEeEECCcChhhCCC
Confidence            3456788999999999987655567999972  11   111       01111122222232  3489999999999999


Q ss_pred             EEEEEEc
Q psy670          386 YKCNIKN  392 (540)
Q Consensus       386 Y~C~a~n  392 (540)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1lk3l1          85 YFCQQSW   91 (106)
T ss_dssp             EEEEECS
T ss_pred             ccccccc
Confidence            9997543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.86  E-value=1.6e-05  Score=58.17  Aligned_cols=68  Identities=19%  Similarity=0.255  Sum_probs=46.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEe--CCEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++++|.|.........+.|||  .|+..            ....+.....  ..   ....|.|.+++.+|+|.
T Consensus        11 ~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1          11 LSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--SG---SDYSLTISSLESEDFAD   85 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--ET---TEEEEEESSCCGGGCSE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--cC---CEEEEEEhhhcccCCeE
Confidence            457899999999998665566799998  23221            0112222221  11   13489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1c5cl1          86 YYCLQYA   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEecCc
Confidence            9998654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.85  E-value=2.1e-05  Score=57.77  Aligned_cols=69  Identities=23%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.|||.  |+.+            ....++....     ......|.|.+++.+|+|
T Consensus        10 ~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_          10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc-----cCCEEEEEEcccCcCCCE
Confidence            35688999999999885555557999983  2211            0112333221     112358999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1j1pl_          85 MYFCQQAN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=3.7e-05  Score=57.30  Aligned_cols=77  Identities=18%  Similarity=0.413  Sum_probs=50.1

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEEC--CEEcc-------CC------CceEEEEEecCCeeEEEEEEcCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHE--GKELQ-------QT------DRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~--~~~~~-------~~------~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ..+..+.+.+|++|+|.|..... ....+.|++-  +....       ..      .+....  ..+......|.|.+++
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWN--FQKSTSSFNFTITASQ   82 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEE--EETTTTEEEEEESSCC
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEE--EcCCCCEEEEeecccc
Confidence            34566778999999999987643 3456899982  22110       00      111122  2222334589999999


Q ss_pred             CCCCeeEEEEEEcCC
Q psy670          380 KEDTGLYKCNIKNFH  394 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~~  394 (540)
                      .+|+|.|.|.+....
T Consensus        83 ~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          83 VVDSAVYFCALSGFY   97 (114)
T ss_dssp             GGGCEEEEEEEECSB
T ss_pred             cccCCCceEeCCCCC
Confidence            999999999876654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.85  E-value=3.3e-05  Score=56.62  Aligned_cols=74  Identities=22%  Similarity=0.436  Sum_probs=49.9

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---c---------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---L---------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...|....+.+|++++|.|.........+.|++-  |..   +         ....++..  ...+.  ...|.|.+++.
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~L~I~~l~~   80 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSG--SGSGT--EFTLTISTLRP   80 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEE--eccCC--EEEEEecccee
Confidence            3446677788999999999987555667899872  211   1         01122222  22222  34899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+.+
T Consensus        81 ~DsA~YyCa~~~   92 (107)
T d1tjgl1          81 EDFATYYCQQLH   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             CcCceEEEEECc
Confidence            999999997644

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.5e-06  Score=59.37  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             CCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEE-EEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          220 ESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKI-IVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       220 ~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      ..++.++|.|.+.+ +|. ..|.|.++|..+........ ...+.++  ...+.|.|..........|+|.+.+....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            34677999999988 554 57999999998765432211 1222333  33456777655445556899999986543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.4e-06  Score=59.41  Aligned_cols=75  Identities=8%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEe-cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTL-KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~-~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      .++.++|.|.+.++ |. ..|.|.+||..+............ ++. ...+.|.|..........|+|.+.+......+
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK   97 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccEEE
Confidence            36678999999985 43 379999999988654321111122 222 23457777665554566799999997654443

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.9e-05  Score=55.89  Aligned_cols=76  Identities=12%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             eCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeEE
Q psy670          324 QGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELNA  399 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  399 (540)
                      ..+..++|.|.+.++ |.. .|.|+++|..+............++.. ..+.|.|..-.......|+|+|.+......+
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            345679999999984 544 689999999987654433333333322 2356888765555567799999998654443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.8e-05  Score=57.60  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCC--eEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDD--TYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .++.++|.|.+.+ +|. ..|.|.++|..+.............++  ...+.|.|..-.......|+|.+.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            3567899999988 454 479999999887643222111222233  3445677766555556799999998643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.4e-05  Score=60.47  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=46.3

Q ss_pred             CccccCCCeEEEEEEEeecC-------CCceEEEeCCEeec--------C---------CCceEEEEeecCcceEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASP-------MPDIIWYQGTKVIE--------D---------TGRIKMSKKSIGKDTYLLRLE  166 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p-------~~~v~W~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~L~  166 (540)
                      .+.+.+|++|+|.|.+....       ...+.|++....-.        .         ..+..+..+.   ....++|.
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~   86 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDP---QTKNCTLS   86 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCG---GGTBCCEE
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeC---cCCEEEEE
Confidence            46788999999999984211       12478988532210        0         1233332221   22234899


Q ss_pred             EcCCCCCCCeEEEEEEEcCC
Q psy670          167 INNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       167 i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      |.+++.+|+|.|.|.+....
T Consensus        87 I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEETT
T ss_pred             ECCCChHHCEEEEEEEEeCC
Confidence            99999999999999997543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=5.8e-05  Score=55.82  Aligned_cols=74  Identities=16%  Similarity=0.389  Sum_probs=50.1

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .|..+.+.+|++++|.|.........+.|++-  |....            ...++...  .+.......|.|.++..+|
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVF--LNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EETTTTEEEEEESSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEE--EEccCCEEEEEECCCcccc
Confidence            45566788999999999987666667889872  22110            01122222  2223335699999999999


Q ss_pred             CeeEEEEEEc
Q psy670          383 TGLYKCNIKN  392 (540)
Q Consensus       383 ~G~Y~C~a~n  392 (540)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=1.2e-05  Score=59.61  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeC--CEe---e-c------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQG--TKV---I-E------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~--~~~---~-~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      .+.+.+|++++|.|...+. ....+.|||.  |+.   + .      ...+.....   ........|.|.+++.+|+|.
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLII---TEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEE---CTTCSEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeee---cccCCeeeehhcccccCCceE
Confidence            3568899999999997543 3345899982  221   1 0      011222221   222334689999999999999


Q ss_pred             EEEEEEcC
Q psy670          178 YRCNACNS  185 (540)
Q Consensus       178 Y~C~~~~~  185 (540)
                      |.|.+...
T Consensus        84 YyCa~~~~   91 (110)
T d2esvd1          84 YYCIVVRS   91 (110)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99987643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.82  E-value=4.5e-05  Score=55.75  Aligned_cols=73  Identities=21%  Similarity=0.409  Sum_probs=49.6

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CE---Ec---------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GK---EL---------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|....+.+|++++|.|.........+.|++-  |.   .+         ....++..  ..++.  ...|.|.+++.+
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~--~~~~~--~~~L~I~~~~~~   80 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSG--SGSGT--EFTLTISGLQFD   80 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEEESCCGG
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceee--eccCC--EEEEEEcccccc
Confidence            346677888999999999987655557899973  11   11         01123322  22222  347999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |+|.|.|.+..
T Consensus        81 Dsa~YyCa~~~   91 (106)
T d1op3k1          81 DFATYHCQHYA   91 (106)
T ss_dssp             GCSEEEEEEEC
T ss_pred             CCCcEeeeeCC
Confidence            99999998654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=4.9e-05  Score=55.60  Aligned_cols=73  Identities=25%  Similarity=0.440  Sum_probs=48.9

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc---c---------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL---Q---------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|....+.+|++++|.|.........+.|++-  |...   .         ...++..  ...+.  ...|.|.+++.+
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~--~~~~~--~~~L~I~~~~~~   81 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTG--SGSGT--DFTLTINNVQSE   81 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeee--cCCCC--eeeeeechhhee
Confidence            345667788999999999976555557999972  2111   0         1122322  22222  348999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |++.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999997653

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.6e-05  Score=60.20  Aligned_cols=76  Identities=20%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccC-------CCeEEEEECCEEccC-----------------CCceEEEEEecCCeeEEEE
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP-------MPEIVWFHEGKELQQ-----------------TDRISWNVTLKGDKYHIRL  373 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p-------~~~i~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~L  373 (540)
                      +..+.+.+|++|.|.|......       ...+.|++.+..-..                 ..++.+  ..+......+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~--~~~~~~~~~sL   85 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL--LGDPQTKNCTL   85 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEE--CSCGGGTBCCE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEE--eeeCcCCEEEE
Confidence            4567788999999999985211       125789875332110                 012222  11111123489


Q ss_pred             EEcCCCCCCCeeEEEEEEcCCe
Q psy670          374 EVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       374 ~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .|.+++.+|+|.|.|++.....
T Consensus        86 ~I~~v~~~DsG~Y~C~v~~~~~  107 (121)
T d2g5ra1          86 SIRDARMSDAGRYFFRMEKGNI  107 (121)
T ss_dssp             EECSCCGGGCEEEEEEEEETTE
T ss_pred             EECCCChHHCEEEEEEEEeCCc
Confidence            9999999999999999976543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.82  E-value=6.7e-05  Score=53.78  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++..+|.|.+.|+ |. ..|.|++||..+............+++.+..... -.+..++...|+|.+.+..-.
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~-l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVM-LETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEE-EECCCCTTCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEE-eeEcCCCCCEEEEEEEECCCC
Confidence            46667899999985 43 3799999999886543221111222223332222 234567778999999997543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.7e-06  Score=60.60  Aligned_cols=62  Identities=10%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             ecCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCC
Q psy670          466 ISKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGP  527 (540)
Q Consensus       466 ~~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~  527 (540)
                      ...++.++|.|.+.|+.+.  .|+|++||..+..............+|+|+..-.+.....++.
T Consensus        16 ~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~   79 (105)
T d1fp5a2          16 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWE   79 (105)
T ss_dssp             SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHT
T ss_pred             HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcC
Confidence            3456789999999995443  9999999998765433222233344556655444444333333

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0002  Score=50.87  Aligned_cols=68  Identities=21%  Similarity=0.404  Sum_probs=43.8

Q ss_pred             eCCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCC-eeE--EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          324 QGGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGD-KYH--IRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ..|+.++|.|.+.|+ |.. .|.|.+||..+......  ....+++ .+.  +.|.+   ...+...|+|.+.+..-.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~--~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRG--DVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEE--EEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETTCS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEe--eeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECCCC
Confidence            357889999999995 443 78999999987643322  2222222 222  23444   445566899999987543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=5.4e-05  Score=56.66  Aligned_cols=78  Identities=21%  Similarity=0.430  Sum_probs=52.1

Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc--------------C---CCceEEEEEecCCeeEEEEE
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ--------------Q---TDRISWNVTLKGDKYHIRLE  374 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~--------------~---~~~~~~~~~~~~~~~~~~L~  374 (540)
                      +...|....+.+|++++|.|...+.....+.|++-  |..+.              .   ..++.  ... .....+.|.
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~--~~~-~~~~~~~L~   80 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFL--INH-ASPTLSTLT   80 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEE--EEE-CSSSEEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccce--eec-ccccccccc
Confidence            34446667788999999999987766678999982  22110              0   11122  111 122345899


Q ss_pred             EcCCCCCCCeeEEEEEEcCC
Q psy670          375 VKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       375 i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      |.+++.+|+|.|.|.+....
T Consensus        81 i~~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          81 VTSAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECSS
T ss_pred             ccccccccCceEEEEEecCC
Confidence            99999999999999986543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.82  E-value=0.00015  Score=52.24  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             cCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCceeEEE
Q psy670          115 QDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGESNAN  192 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~  192 (540)
                      ..|+..+|.|.+.|+ |.. .+.|.+||..+.............+.....+.|.|..   ++...|+|.+.+..-.....
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p~~   92 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYTAI   92 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTEEEE
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCCCEE
Confidence            467888999999885 543 7999999998765544444444444455556777764   34557999999876544333

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=2.6e-05  Score=57.78  Aligned_cols=74  Identities=15%  Similarity=0.410  Sum_probs=48.7

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .|....+.+|++++|.|.........+.|++-  |....            ...+....  .........|.|.++..+|
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIF--FNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EETGGGEEEEEESSCCTTS
T ss_pred             cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEE--ECCCCCeeEeEeccCCCCC
Confidence            35567788999999999987554456899973  21110            01111111  1222334589999999999


Q ss_pred             CeeEEEEEEc
Q psy670          383 TGLYKCNIKN  392 (540)
Q Consensus       383 ~G~Y~C~a~n  392 (540)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (110)
T d1u3ha1          83 SATYFCAASA   92 (110)
T ss_dssp             CSEEEECCEE
T ss_pred             ceeEeeeecC
Confidence            9999998764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.81  E-value=2.1e-05  Score=58.33  Aligned_cols=71  Identities=24%  Similarity=0.412  Sum_probs=46.4

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------C------CCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------D------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.|||.  |....      .      ..+......   .......|.|.+++.+|+|
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE---TGGGEEEEEESSCCTTSCS
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEEC---CCCCeeEeEeccCCCCCce
Confidence            35678999999999986544456999983  22110      0      111112111   1122358999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (110)
T d1u3ha1          85 TYFCAASA   92 (110)
T ss_dssp             EEEECCEE
T ss_pred             eEeeeecC
Confidence            99998764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.81  E-value=5.8e-06  Score=60.45  Aligned_cols=68  Identities=22%  Similarity=0.351  Sum_probs=45.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++|+|.|.........+.|||.  |....            ...++....     +.....|.|.+++.+|+|.
T Consensus         8 l~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~Dsa~   82 (103)
T d8faba1           8 VSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST-----SGTTVTLTISGVQAEDEAD   82 (103)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC-----CCCccCceEcCcchhHCce
Confidence            5678999999999885544557899983  22110            012222211     1123589999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        83 YyCA~~~   89 (103)
T d8faba1          83 YYCQAWD   89 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeeecC
Confidence            9998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4e-05  Score=57.03  Aligned_cols=70  Identities=19%  Similarity=0.388  Sum_probs=45.5

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeCC--Ee------ec-C-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQGT--KV------IE-D-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~~--~~------~~-~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      ...+.+|++|+|.|.+.+. ....+.|||..  ..      +. .           ..++....  ..   ....|.|.+
T Consensus         9 ~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~---~~~~L~I~~   83 (114)
T d1akjd_           9 DRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LG---DTFVLTLSD   83 (114)
T ss_dssp             SCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ET---TEEEEEESS
T ss_pred             cEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CC---CChhcEEcc
Confidence            3457899999999998544 34468999821  11      10 0           11222211  11   134899999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy670          170 PTKDDGGNYRCNACNS  185 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~  185 (540)
                      ++.+|+|.|.|.+...
T Consensus        84 l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          84 FRRENEGYYFCSALSN   99 (114)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCCCCCEEEeEeEcCC
Confidence            9999999999998743

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=5.8e-05  Score=55.40  Aligned_cols=73  Identities=25%  Similarity=0.464  Sum_probs=49.0

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CE---Ecc-------C--CCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GK---ELQ-------Q--TDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~---~~~-------~--~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++-  +.   .+.       .  ..++.  ....+.  ...|.|.+++.+
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs--~~~~~~--~~~L~I~~~~~~   81 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFS--GSGSGT--QFSLKINSLLPE   81 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEE--EEEETT--EEEEEESSCCGG
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEE--EeccCC--EEEEEEcccccc
Confidence            346667788999999999986555556999982  11   110       1  12222  222222  348999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCA~~~   92 (109)
T d1mqkl_          82 DFGSYYCQHHY   92 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeeEEEeeeC
Confidence            99999998753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=7.7e-05  Score=52.54  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+..++|.|.+.|+ |. ..|+|.+||..+.... .......++.. ..+.|.+..   ++...|+|++.+..-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~sL~   84 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEGLA   84 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence            45689999999995 54 3799999999875432 22222222222 234566643   4556899999987543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.79  E-value=2.4e-05  Score=58.45  Aligned_cols=72  Identities=18%  Similarity=0.333  Sum_probs=46.9

Q ss_pred             CccccCCCeEEEEEEEee-cCCCceEEEeC--CEeec--------C-----CCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEA-SPMPDIIWYQG--TKVIE--------D-----TGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~--~~~~~--------~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .+.+.+|++|+|.|.... .....+.|||.  |+.+.        .     ..++......   ......|.|.+++.+|
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK---PKSSIGLIITATQIED   84 (115)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEG---GGTEEEEEECSCCGGG
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEec---cCCEEEEEECCCCccc
Confidence            356889999999998843 34446899982  22110        0     1222222221   1223589999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (115)
T d1fo0a_          85 SAVYFCAMRGD   95 (115)
T ss_dssp             CEEEEEEEECC
T ss_pred             cccccceeecC
Confidence            99999998644

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9.2e-06  Score=58.11  Aligned_cols=64  Identities=11%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .|..|++|+|.|.........+.|+|+|......  ..   ..    ...+.+.|.+++.+|+|+|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~---~~----~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQ---SG----EHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EE---EC----SSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--Ec---CC----CcccEEEEeccccccCcEEEEEEEcC
Confidence            6889999999998633344579999998643221  11   00    11237999999999999999987643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.1e-05  Score=59.31  Aligned_cols=72  Identities=14%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             EEeeCCCeEEEEEEEEccC----CCeEEEEECCEEccCC--C--------ceEEEEEecCCeeEEEEEEcCCCCCCCeeE
Q psy670          321 RSEQGGKLVVMECKVKAKP----MPEIVWFHEGKELQQT--D--------RISWNVTLKGDKYHIRLEVKDPRKEDTGLY  386 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p----~~~i~W~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  386 (540)
                      +....|+.++|.|......    ...+.|.+++..+...  .        ..+......++   .+|.|.+++.+|+|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~---~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT---TEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc---EEEEECcCChHHCeEE
Confidence            4567899999999875322    1367888877654211  0        01111122222   2899999999999999


Q ss_pred             EEEEEcCCe
Q psy670          387 KCNIKNFHG  395 (540)
Q Consensus       387 ~C~a~n~~g  395 (540)
                      .|.+.+..+
T Consensus        81 ~C~V~~~~~   89 (105)
T d1dr9a1          81 ECVVLKYEK   89 (105)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999986543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=3.1e-05  Score=56.67  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=45.9

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CE---eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TK---VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+.+.+|++++|.|...+.....+.|||.  ++   .+-         ...++....     ......|.|.+++.+|+|
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa   83 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADDTA   83 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec-----CCCEEEeEECCcChhhCC
Confidence            35688999999999996555567999983  21   110         112222221     112348999999999999


Q ss_pred             EEEEEEE
Q psy670          177 NYRCNAC  183 (540)
Q Consensus       177 ~Y~C~~~  183 (540)
                      .|.|...
T Consensus        84 ~YyCa~~   90 (106)
T d1lk3l1          84 IYFCQQS   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             Ccccccc
Confidence            9999754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.78  E-value=5.3e-05  Score=55.41  Aligned_cols=70  Identities=20%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYR  179 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  179 (540)
                      .++.+|++++|.|.........+.||+.  ++.   + .      ...........   ......|.|.+++.+|+|.|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_          11 LVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCSEEE
T ss_pred             EEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC---CCCEEEeEeeeeEeccceEEE
Confidence            4678999999999986555567999982  211   1 0      11111111111   122358999999999999999


Q ss_pred             EEEEc
Q psy670          180 CNACN  184 (540)
Q Consensus       180 C~~~~  184 (540)
                      |....
T Consensus        88 CA~~~   92 (108)
T d1jhll_          88 CQQHN   92 (108)
T ss_dssp             EEECS
T ss_pred             EeeCC
Confidence            97654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.77  E-value=5.5e-05  Score=53.95  Aligned_cols=66  Identities=17%  Similarity=0.488  Sum_probs=44.1

Q ss_pred             CCeEEEEEEEEccCCCeEEEEEC--CEE---c---c-----CCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          326 GKLVVMECKVKAKPMPEIVWFHE--GKE---L---Q-----QTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       326 g~~v~l~C~~~~~p~~~i~W~~~--~~~---~---~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      |+.++|.|.........+.|++-  |..   +   .     ...++.....  ......+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~--~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN--KASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec--CCCCEEeEEeeccccCcCccceeeEec
Confidence            78899999987766678999972  111   1   0     1112222222  222345899999999999999998865


Q ss_pred             C
Q psy670          393 F  393 (540)
Q Consensus       393 ~  393 (540)
                      .
T Consensus        79 ~   79 (94)
T d2gj6d1          79 D   79 (94)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=0.00032  Score=46.25  Aligned_cols=87  Identities=20%  Similarity=0.298  Sum_probs=59.7

Q ss_pred             ceEEeeCCCeEEEEEEEEc-cCCCeEEEEECCE----EccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEcC
Q psy670          319 KIRSEQGGKLVVMECKVKA-KPMPEIVWFHEGK----ELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  393 (540)
                      ....+..|+.+.|.|.+.- ...|.++|-+-+.    ++.........-...++.....|-+..+..+|.|.|+|.|.-.
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            3456788999999999974 5688999987432    3333333333333445555568999999999999999999777


Q ss_pred             Ceee-EEEEEEEE
Q psy670          394 HGEL-NANLTLNI  405 (540)
Q Consensus       394 ~g~~-~~~~~l~V  405 (540)
                      .+-. +-++++.|
T Consensus        91 s~vieSHSvti~V  103 (104)
T d1xaua_          91 SQVINSHSVTIHV  103 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             hhheecceEEEEe
Confidence            6654 33444444

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.76  E-value=8.9e-05  Score=53.09  Aligned_cols=70  Identities=17%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .++..+|.|.+.+ +|. ..|+|+++|..+.............++.+.....+ .+...+...|+|.+.+..-
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l-~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVML-ETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEE-ECCCCTTCEEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEe-eEcCCCCCEEEEEEEECCC
Confidence            4666789999998 454 47999999998865422211222344555543333 3456677799999998643

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.76  E-value=9.6e-05  Score=52.76  Aligned_cols=70  Identities=26%  Similarity=0.303  Sum_probs=45.3

Q ss_pred             cCCCCeEEEEEEeccc-C-CCeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          219 NESGTLIQMKCKCSAK-P-RPEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      ...++.++|.|.+.++ | ...|+|.+||..+...........+.++++.  +.|.+.   .++...|+|.+.+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCC
Confidence            4457789999999994 5 4579999999988654322222222333333  345553   3445589999998744

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=7e-05  Score=55.08  Aligned_cols=74  Identities=22%  Similarity=0.401  Sum_probs=49.8

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CE---Ecc---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GK---ELQ---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...|..+.+.+|++++|.|...+.....+.|++.  |.   .+.         ...++..  ..++.  ...|.|.+++.
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~--~~~~~--~~~L~I~~l~~   82 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSG--SGSGT--DYTFTISSLQP   82 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEe--eCCCC--EeEEEEeecee
Confidence            3446667788999999999987655567899972  11   110         1122222  22232  34799999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCA~~~   94 (109)
T d1bwwa_          83 EDIATYYCQQYQ   94 (109)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcCceEEEeecC
Confidence            999999998654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.75  E-value=1.9e-05  Score=58.62  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=45.9

Q ss_pred             ccccCCCeEEEEEEEeecC-CCceEEEeC--CEeec----------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeEE
Q psy670          112 TIHQDGDLLVMECVLEASP-MPDIIWYQG--TKVIE----------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p-~~~v~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                      +.+.+|++|+|.|...+.. ...+.|||.  |+.+.          .......   ....+.....|.|.+++.+|+|.|
T Consensus         8 ~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           8 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASL---AIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             EEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEE---EECTTSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccce---eecccCCeeEEEEeecccccceeE
Confidence            5678999999999986544 345899983  22211          0111111   112233345899999999999999


Q ss_pred             EEEEEc
Q psy670          179 RCNACN  184 (540)
Q Consensus       179 ~C~~~~  184 (540)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.75  E-value=8.1e-05  Score=53.17  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             eeCCCeEEEEEEEEcc-C-CCeEEEEECCEEccCCCceEEEEE-ecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          323 EQGGKLVVMECKVKAK-P-MPEIVWFHEGKELQQTDRISWNVT-LKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ...++.++|.|.+.++ | ...|+|.+||..+........... .++.. ..+.|.+.   .++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCC
Confidence            3457789999999996 4 347999999998865433221122 22322 23356654   44556899999997644

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.7e-05  Score=54.86  Aligned_cols=74  Identities=16%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             CCeeccCCceeecCCCCeEEEEEEecccCCCeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEE
Q psy670          207 APSFIEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNV  286 (540)
Q Consensus       207 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  286 (540)
                      .|.+...|.. .+..|++++|.|.........+.|+|+|.......     .. .  ...+.+.|.+++.+|+|.|+|..
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-----~~-~--~~~a~F~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-----QS-G--EHPANFSLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-----EE-C--SSSEEEECCSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-----cC-C--CcccEEEEeccccccCcEEEEEE
Confidence            5556555543 57789999999987544556789999886432211     01 1  11247899999999999999988


Q ss_pred             EcC
Q psy670          287 KNE  289 (540)
Q Consensus       287 ~~~  289 (540)
                      ...
T Consensus        76 ~~~   78 (96)
T d1ucta2          76 WYN   78 (96)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.75  E-value=2.6e-05  Score=57.14  Aligned_cols=67  Identities=22%  Similarity=0.275  Sum_probs=45.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEee----------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI----------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++|+|.|.........+.||+.  |+..          .  ...++....     ......|.|.+++.+|+|.
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG-----SGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE-----ETTEEEEECSCCCSCCCSE
T ss_pred             EEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc-----cCCEEEEEEeEeeecCCCc
Confidence            4678999999999986655567999982  2211          0  112222111     1113589999999999999


Q ss_pred             EEEEEE
Q psy670          178 YRCNAC  183 (540)
Q Consensus       178 Y~C~~~  183 (540)
                      |.|...
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.74  E-value=4.4e-05  Score=55.78  Aligned_cols=69  Identities=23%  Similarity=0.332  Sum_probs=46.6

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CE---ee-------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TK---VI-------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~---~~-------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.||+.  |+   .+       .  ...++....     +.....|.|.+++.+|+|
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG-----SGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGGGCS
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec-----cCCEEEEEEccccccCCC
Confidence            35688999999999986555557999983  21   11       0  112322221     122348999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99998764

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.74  E-value=8.6e-05  Score=53.40  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=44.2

Q ss_pred             cCCCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          219 NESGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       219 ~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      ...|+..+|.|.+.+ +|. ..|+|++||..+...........+.++++  .+.|.+..   .+...|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            345778899999999 454 47999999998865322111122233333  34555543   33457999999864

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.4e-05  Score=58.76  Aligned_cols=69  Identities=17%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             ccccCCCeEEEEEEEeecCC----CceEEEeCCEeecC------------CCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPM----PDIIWYQGTKVIED------------TGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~----~~v~W~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      +....|++++|.|.......    ..+.|.+++..+..            ..+....    ..+  ..+|.|.+++.+|+
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~----~~g--~~sL~I~~v~~~D~   77 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD----ITN--NLSIVILALRPSDE   77 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE----STT--TTEEEECSCCGGGC
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec----cCC--cEEEEECcCChHHC
Confidence            34678999999998743221    24788777655311            1122211    111  23899999999999


Q ss_pred             eEEEEEEEcCC
Q psy670          176 GNYRCNACNSI  186 (540)
Q Consensus       176 G~Y~C~~~~~~  186 (540)
                      |.|.|.+.+..
T Consensus        78 G~Y~C~V~~~~   88 (105)
T d1dr9a1          78 GTYECVVLKYE   88 (105)
T ss_dssp             EEEEEEEEECC
T ss_pred             eEEEEEEEeCC
Confidence            99999997643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.74  E-value=4.5e-05  Score=55.96  Aligned_cols=68  Identities=19%  Similarity=0.318  Sum_probs=46.2

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++|+|.|.........+.|||.  ++.   +       .  ...++....     ......|.|.+++.+|+|.
T Consensus        11 l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1          11 MGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG-----SATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             EEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec-----cCCeeecEEHhheecCCce
Confidence            4688999999999986555557999983  211   1       0  112222221     1123489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1kcvl1          86 YYCGQSY   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.1e-05  Score=58.56  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=46.5

Q ss_pred             EEeeCCCeEEEEEEEEc--cCCCeEEEEEC--CEE---cc---C-----CCc--eEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          321 RSEQGGKLVVMECKVKA--KPMPEIVWFHE--GKE---LQ---Q-----TDR--ISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~--~p~~~i~W~~~--~~~---~~---~-----~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      ..+.+|++++|.|...+  .....+.|++.  +..   +.   .     ...  -++....+......+|+|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45678999999999764  24457899973  211   10   0     000  01222223333345899999999999


Q ss_pred             eeEEEEEEcC
Q psy670          384 GLYKCNIKNF  393 (540)
Q Consensus       384 G~Y~C~a~n~  393 (540)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999988554

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.73  E-value=2.4e-05  Score=58.43  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             CCceEEeeCCCeEEEEEEEEcc-CCCeEEEEEC-----CEEc------cC-----------CCceEEEEEecCCeeEEEE
Q psy670          317 KPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHE-----GKEL------QQ-----------TDRISWNVTLKGDKYHIRL  373 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~-----~~~~------~~-----------~~~~~~~~~~~~~~~~~~L  373 (540)
                      .|....+.+|++++|.|.+.+. ....+.|++-     ++.+      ..           ..++...  .........|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L   81 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIIL--ESSDSRRPFL   81 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEE--ESTTSSSCEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEE--EeCCCCeEEE
Confidence            4566778899999999998763 4557899873     2211      00           0111111  1222223379


Q ss_pred             EEcCCCCCCCeeEEEEEEc
Q psy670          374 EVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       374 ~i~~~~~~d~G~Y~C~a~n  392 (540)
                      .|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998754

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=6.9e-05  Score=54.82  Aligned_cols=73  Identities=16%  Similarity=0.353  Sum_probs=48.9

Q ss_pred             CccccCCCeEEEEEEEeec--CCCceEEEeC--CEe----ec-C----------CCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS--PMPDIIWYQG--TKV----IE-D----------TGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~--p~~~v~W~~~--~~~----~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ...+.+|++++|.|...+.  ....+.|+|.  ++.    +. .          .+++.+..+   .......|+|.+++
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d---~~~~~~~lti~~L~   80 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHD---PSEAMLQVQMTDLQ   80 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEE---GGGTEEEEEECSCC
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEE---CCCCEEEEEECccc
Confidence            3467899999999998653  4556889983  321    11 1          122333321   23334589999999


Q ss_pred             CCCCeEEEEEEEcCC
Q psy670          172 KDDGGNYRCNACNSI  186 (540)
Q Consensus       172 ~~d~G~Y~C~~~~~~  186 (540)
                      .+|+|.|.|......
T Consensus        81 ~eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          81 VTDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             cCCCEEEEEEEeCCC
Confidence            999999999986544

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=4.1e-05  Score=56.02  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++++|.|.........+.|||.  |+.   +.         ...++....  .+   ....|.|.+++.+|+|.
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~---~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1          11 MSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SG---TDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ET---TEEEEEESSCCGGGCSE
T ss_pred             EEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CC---Ceeeeeechhheeccee
Confidence            4678999999999985554557999972  221   10         112332221  11   23489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1mexl1          86 YFCQQYN   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeECC
Confidence            9998653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.73  E-value=7.6e-05  Score=54.90  Aligned_cols=70  Identities=20%  Similarity=0.406  Sum_probs=46.1

Q ss_pred             CccccCCCeEEEEEEEeecCC----CceEEEeC--CEeec------C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPM----PDIIWYQG--TKVIE------D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~----~~v~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      +..+++|++++|.|.+.|+..    ..+.|+|.  |+.+.      .          ..++.+..+   .......|.|.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d---~s~~~~~L~i~   85 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKD---ASKKQVVLTLT   85 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECC---TTTTEEEEEEE
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecc---cccceeeeeEE
Confidence            456788999999999977532    35789983  32210      0          123333322   11223589999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          86 NLDPVDTATYYCART  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeeccceEEeeEec
Confidence            999999999999754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.73  E-value=7.5e-05  Score=55.83  Aligned_cols=70  Identities=19%  Similarity=0.446  Sum_probs=47.3

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------C-----------CCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------D-----------TGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+|++++|.|...+.....+.|||.  |+.+.      .           ..++....    .......|.|.+++.
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1          11 VIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH----ASPTLSTLTVTSAHP   86 (118)
T ss_dssp             EEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE----CSSSEEEEEECSCCG
T ss_pred             EEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec----ccccccccccccccc
Confidence            4678999999999986666668999982  32110      0           11222211    112234799999999


Q ss_pred             CCCeEEEEEEEcC
Q psy670          173 DDGGNYRCNACNS  185 (540)
Q Consensus       173 ~d~G~Y~C~~~~~  185 (540)
                      +|+|.|.|.+...
T Consensus        87 ~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          87 EDSGFYVCSALAG   99 (118)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCceEEEEEecC
Confidence            9999999998654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.72  E-value=0.0001  Score=53.38  Aligned_cols=72  Identities=17%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+-+      ..          ..|+.+..+.   ......|+|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~---s~~~~~L~i~~L   85 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNT---SKNQFSLRLSSV   85 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEET---TTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeeccc---chhhhhcccccc
Confidence            4678899999999999886544  5889872  3211      11          1344444322   222347999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy670          171 TKDDGGNYRCNACNS  185 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~  185 (540)
                      +.+|++.|.|.....
T Consensus        86 ~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          86 TAADTAVYYCARNLI  100 (116)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ccccceEEEeeeecC
Confidence            999999999986543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.72  E-value=2.8e-05  Score=57.56  Aligned_cols=70  Identities=26%  Similarity=0.435  Sum_probs=46.7

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ...+.+|++++|.|...+..  ...+.||+.  +..   +.         ...++....     +.....|.|.+++.+|
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D   83 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK-----SGTSASLAISGLESED   83 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC-----CCCeeeeEecccCccc
Confidence            35678999999999986543  456899983  211   10         112322221     1123489999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      ++.|.|.....
T Consensus        84 sA~YyCA~~~~   94 (114)
T d2rhea_          84 EADYYCAAWND   94 (114)
T ss_dssp             CEEEEEEEEET
T ss_pred             CceEEEeecCC
Confidence            99999997643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.72  E-value=9.7e-05  Score=55.26  Aligned_cols=77  Identities=18%  Similarity=0.397  Sum_probs=51.4

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      ...+..+.+.+|++++|.|...+..  ...+.|++-  |+.+            ...+++.......  .....|.|.++
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~--~~~~~L~i~~~   82 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIA--KNLAVLKILAP   82 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGG--GTEEEEEESSC
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecccc--ccceecccccc
Confidence            3445567788999999999997643  346899972  2111            0113343333222  23468999999


Q ss_pred             CCCCCeeEEEEEEcC
Q psy670          379 RKEDTGLYKCNIKNF  393 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~  393 (540)
                      +.+|+|.|.|.....
T Consensus        83 ~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          83 SERDEGSYYCACDTL   97 (120)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             cccCCceeecCcccC
Confidence            999999999987553

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.72  E-value=0.00013  Score=54.48  Aligned_cols=75  Identities=16%  Similarity=0.267  Sum_probs=48.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEE---cc---C-C-------CceEEEEEecCCeeEEEEEEcCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKE---LQ---Q-T-------DRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~---~~---~-~-------~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      +..+...+|++++|.|.+.+..  ...+.|++-  |+.   +.   . .       ...+.....+.....+.|.|.+++
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            3456677899999999986543  356899982  111   10   0 0       111223333333445589999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|+|.|.|.+..
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.71  E-value=9e-05  Score=54.07  Aligned_cols=71  Identities=21%  Similarity=0.418  Sum_probs=48.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+.+      ..          ..|+.+..+.   ......|.|.++
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~---s~~~~~L~i~~L   84 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN---AKNTAYLQMDSL   84 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS---STTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEeccc---CCcceecccccC
Confidence            4578899999999999886544  5789883  2211      11          1344444332   222348999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy670          171 TKDDGGNYRCNACN  184 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~  184 (540)
                      +.+|++.|.|....
T Consensus        85 ~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          85 KPDDTAMYYCKPSL   98 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcCCcceEeeeecc
Confidence            99999999997654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00013  Score=47.67  Aligned_cols=58  Identities=19%  Similarity=0.431  Sum_probs=41.5

Q ss_pred             cCCCeEEEEEEEeecCCC--ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670          115 QDGDLLVMECVLEASPMP--DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       115 ~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      ..|..+.|+|.....+.+  .-.|.|+|+.+..+......          ..+.|..  .+++|.|.|++..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~----------tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK----------TEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSE----------EEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCc----------eEEEEec--CCCCceEEEEEcC
Confidence            467889999999654333  58999999999765322111          1566664  7899999999753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.71  E-value=7.5e-05  Score=55.66  Aligned_cols=75  Identities=20%  Similarity=0.328  Sum_probs=49.4

Q ss_pred             CCceEEeeCCCeEEEEEEEEc-cCCCeEEEEEC--CEEcc-------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKA-KPMPEIVWFHE--GKELQ-------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~-~p~~~i~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .+..+.+.+|++|+|.|.... .....+.|++.  |..+.             ...++.......  .....|.|.+++.
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~   82 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP--KSSIGLIITATQI   82 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGG--GTEEEEEECSCCG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEecc--CCEEEEEECCCCc
Confidence            455677899999999998754 34456899972  11100             012233332222  2245899999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999998654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.70  E-value=0.00013  Score=53.02  Aligned_cols=74  Identities=19%  Similarity=0.388  Sum_probs=46.5

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEECC--EEc----------cCCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEG--KEL----------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      ..|..+.+.+|++++|.|.... ....+.|++-.  ...          .............+.  ...|.|.++..+|+
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGT--SYSLTISSMETEDA   81 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT--EEEEEESSCCGGGC
T ss_pred             CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCC--EEEEEecccCcccC
Confidence            3466677889999999998643 33457899731  100          000111111122222  34899999999999


Q ss_pred             eeEEEEEEc
Q psy670          384 GLYKCNIKN  392 (540)
Q Consensus       384 G~Y~C~a~n  392 (540)
                      |.|.|.+..
T Consensus        82 a~YyCa~~~   90 (104)
T d1yqvl1          82 ATYYCQQWG   90 (104)
T ss_dssp             EEEEEEECS
T ss_pred             CeEEEEecC
Confidence            999997644

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.70  E-value=5.3e-05  Score=56.00  Aligned_cols=75  Identities=21%  Similarity=0.398  Sum_probs=49.8

Q ss_pred             CCceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .|..+.+.+|++++|.|...+..  ..-+.|++-  +..+            ...+++.....  .......|.|.+++.
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID--RSSNSASLTISGLKT   83 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE--TTTTEEEEEECSCCG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec--CCCCccccccccCCc
Confidence            35567788999999999986543  234889872  2111            01223333333  223356899999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|++.|.|.+.+.
T Consensus        84 ~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          84 EDEADYYCQSYDA   96 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCcEEEEeeccC
Confidence            9999999986543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.9e-05  Score=57.56  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCCCeEEEEEEEcCC--ce---eEEEEEEEEe
Q psy670          164 RLEINNPTKDDGGNYRCNACNSI--GE---SNANIALNFQ  198 (540)
Q Consensus       164 ~L~i~~~~~~d~G~Y~C~~~~~~--~~---~~~~~~l~v~  198 (540)
                      +|.|.+++.+|+|.|.|.+....  +.   ....+.|.|.
T Consensus        70 sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             EEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            79999999999999999986433  32   1444555553

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=4.6e-05  Score=55.96  Aligned_cols=68  Identities=22%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c------C--CCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E------D--TGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++++|.|.........+.|||.  ++.   + .      .  ..++....     ......|.|.+++.+|+|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~DSa~   85 (109)
T d1mqkl_          11 LSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-----SGTQFSLKINSLLPEDFGS   85 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec-----cCCEEEEEEccccccCCee
Confidence            4577999999999986555567999982  221   1 0      1  12222211     1223589999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        86 YyCA~~~   92 (109)
T d1mqkl_          86 YYCQHHY   92 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeeeC
Confidence            9998753

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=0.00013  Score=51.40  Aligned_cols=65  Identities=14%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             CCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeE--EEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          222 GTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTY--EIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       222 g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      +..++|.|.+.| +|. ..|+|.++|..+..... .. ....++++  .+.|.+..   .+...|+|.+.+..-
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~-~~-~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~sL   83 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC-ST-GPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEGL   83 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE-EE-EECSSSCEEEEEEEEEET---TCGGGEEEEEECTTS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCc-cc-eecCCCCEeEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            457899999999 564 47999999988754332 22 22333444  34565543   345689999998643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.70  E-value=8.1e-05  Score=54.43  Aligned_cols=73  Identities=26%  Similarity=0.447  Sum_probs=48.9

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---cc---------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|....+.+|++++|.|.........+.|++.  +..   +.         ...++..  ...+.  ...|.|.+++.+
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~--~~~~~--~~~L~I~~~~~~   81 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSG--SGSGQ--DYSLTISSLEYE   81 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceee--cccCC--EEEccccccCCc
Confidence            345667788999999999886655566889872  111   00         1122322  22222  348999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00012  Score=52.10  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      .|+.++|.|.+.|+ |.. .|.|.+||..+.............+.....+.|.+.   ..+...|+|.+.+...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~---~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVP---PQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEEC---TTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeC---CCCCCEEEEEEEECCC
Confidence            46789999999885 554 899999999876543333333333333334455554   4456689999988653

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=6.7e-05  Score=53.47  Aligned_cols=68  Identities=10%  Similarity=0.229  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCCeeE--EEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          325 GGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .++.++|.|.+.|+.+.  .|+|.++|..+............+++.+.  +.|.+..   .+...|+|++.+..-
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~L   85 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEGL   85 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTC
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECcC
Confidence            35679999999996443  68999999988765432222222333332  3455543   344679999998753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.69  E-value=4.9e-05  Score=55.63  Aligned_cols=68  Identities=19%  Similarity=0.329  Sum_probs=46.1

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++|+|.|.........+.|||.  |+.   +       .  ...++....     ......|.|.+++.+|+|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~DsA~   85 (107)
T d1tjgl1          11 LSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG-----SGTEFTLTISTLRPEDFAT   85 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCSE
T ss_pred             EEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec-----cCCEEEEEeccceeCcCce
Confidence            4578999999999986555668999983  211   1       0  112222221     1223589999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|....
T Consensus        86 YyCa~~~   92 (107)
T d1tjgl1          86 YYCQQLH   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEECc
Confidence            9997653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.68  E-value=9.2e-05  Score=55.04  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             eccCCceeecCCCCeEEEEEEecc-cCCCeEEEEeC--CEE---ee----------ccCceEEEEecCCCeEEEEEEEeC
Q psy670          210 FIEKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKA--DKL---VK----------ESSKIKIIVNEQDDTYEIICEITD  273 (540)
Q Consensus       210 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~--~~~---l~----------~~~~~~~~~~~~~~~~~~~l~i~~  273 (540)
                      +...+..+.+.+|++++|.|.... .....+.||+.  +..   +.          ...+.........  ....|.|.+
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~   80 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKST--SSFNFTITA   80 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTT--TEEEEEESS
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCC--CEEEEeecc
Confidence            344566777889999999998754 34456899982  221   10          0112222222222  235799999


Q ss_pred             CCCCCcEEEEEEEEcCC
Q psy670          274 PIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       274 ~~~~d~g~y~C~~~~~~  290 (540)
                      ++.+|+|.|.|.+....
T Consensus        81 ~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          81 SQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             CCGGGCEEEEEEEECSB
T ss_pred             cccccCCCceEeCCCCC
Confidence            99999999999776543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=3.9e-05  Score=57.26  Aligned_cols=74  Identities=18%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             cCCceeecCCCCeEEEEEEecc-cCCCeEEEEeC-----CEEee------c-----------cCceEEEEecCCCeEEEE
Q psy670          212 EKPRIIPNESGTLIQMKCKCSA-KPRPEVKWFKA-----DKLVK------E-----------SSKIKIIVNEQDDTYEII  268 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~-----~~~l~------~-----------~~~~~~~~~~~~~~~~~~  268 (540)
                      ..|..+.+.+|++++|.|.+.+ .....+.|++.     ++.+.      .           ..+......  .......
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~   80 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILES--SDSRRPF   80 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEES--TTSSSCE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEe--CCCCeEE
Confidence            3466777889999999999976 34557999973     22110      0           011112221  1222347


Q ss_pred             EEEeCCCCCCcEEEEEEEE
Q psy670          269 CEITDPIGPDSGTYRCNVK  287 (540)
Q Consensus       269 l~i~~~~~~d~g~y~C~~~  287 (540)
                      |.|.+++.+|+|.|.|.+.
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeecccCCCCCcEEEEeEc
Confidence            9999999999999999765

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0001  Score=51.74  Aligned_cols=68  Identities=15%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             eCCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          324 QGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ..++.++|.|.+.|+.+.  .|+|.++|..+............+++.+  .+.|.+..-   +...|+|.+.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            346789999999996443  6899999998875443221122222222  346666543   3447999998864

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.68  E-value=0.00013  Score=51.85  Aligned_cols=69  Identities=12%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEec-CCee--EEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLK-GDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++.++|.|.+.++ |. ..|.|.++|..+............+ ++.+  .+.|.+..   .+...|+|.+.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~   87 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSGNH   87 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETTEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECCCC
Confidence            35678999999995 43 3789999999887654322222222 2223  23455543   3445799999987543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.67  E-value=6.2e-05  Score=55.96  Aligned_cols=75  Identities=20%  Similarity=0.460  Sum_probs=49.7

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc------c------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL------Q------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~------~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .|....+.+|++++|.|...+. ...+.|++-  |..+      .      ...++..  ..+.......|.|.++..+|
T Consensus         6 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           6 SPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTF--QFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             ECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEE--EECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeeccccc--ccccccceeeeeecCCCccc
Confidence            3556778899999999987643 346899982  2110      0      0112222  22333345689999999999


Q ss_pred             CeeEEEEEEcCC
Q psy670          383 TGLYKCNIKNFH  394 (540)
Q Consensus       383 ~G~Y~C~a~n~~  394 (540)
                      +|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (115)
T d1ogad1          83 TGLYLCAGAGSQ   94 (115)
T ss_dssp             CEEEEEEEECTT
T ss_pred             eeeEcccccCCC
Confidence            999999886543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.9e-05  Score=53.47  Aligned_cols=62  Identities=11%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             eceeecCCcEEEecCCCeEEEEEEEeee-cCC-ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEee
Q psy670          454 VPVIREVPKVVTISKKKTVVIECKVMSM-YEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWL  519 (540)
Q Consensus       454 ~p~i~~~~~~~~~~~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~  519 (540)
                      ||.+...    .-..++.++|.|.|.|+ |+. .++|++||+.+..............+|+|.....+
T Consensus         4 pP~V~v~----~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l   67 (94)
T d1de4a1           4 PPLVKVT----HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITL   67 (94)
T ss_dssp             CCEEEEE----EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEE
T ss_pred             CCEEEEE----EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEE
Confidence            6666542    12246778999999995 544 89999999987543221222333445555444443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.66  E-value=9.3e-05  Score=53.67  Aligned_cols=72  Identities=17%  Similarity=0.443  Sum_probs=48.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+.   ......|.|.+
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~---s~~t~~L~i~~   85 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADT---STNIAYMELSS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccc---ccceEEEeecc
Confidence            4578899999999999886543  5788882  3221      1 1          2334444321   22234799999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy670          170 PTKDDGGNYRCNACNS  185 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~  185 (540)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             cCcCcceEEEEeEcCC
Confidence            9999999999986543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.66  E-value=4.4e-05  Score=55.57  Aligned_cols=71  Identities=21%  Similarity=0.377  Sum_probs=46.5

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCe
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  384 (540)
                      ..+.+.+|++++|.|.........+.|++-  |....            ...++..  ..+..  ...|.|.+++.+|+|
T Consensus         6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~L~I~~l~~~Dsa   81 (103)
T d8faba1           6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSS--STSGT--TVTLTISGVQAEDEA   81 (103)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE--EEETT--EEEEEETTCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEE--CCCCC--ccCceEcCcchhHCc
Confidence            356678999999999876544456899972  11110            0112222  22222  348999999999999


Q ss_pred             eEEEEEEcC
Q psy670          385 LYKCNIKNF  393 (540)
Q Consensus       385 ~Y~C~a~n~  393 (540)
                      .|.|.+.+.
T Consensus        82 ~YyCA~~~~   90 (103)
T d8faba1          82 DYYCQAWDN   90 (103)
T ss_dssp             EEEEEEEET
T ss_pred             eEEeeecCC
Confidence            999987543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=0.00012  Score=52.95  Aligned_cols=70  Identities=19%  Similarity=0.444  Sum_probs=48.5

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|....  .+.|+|.  |+.+      ..          ..|+.+..+.   ......|.|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~---s~n~~~L~~~sL   85 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT---SKSQVFLKMNSL   85 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEET---TTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccc---ccceeecccccc
Confidence            4578899999999999886543  5889872  3221      11          2355554432   222347999999


Q ss_pred             CCCCCeEEEEEEE
Q psy670          171 TKDDGGNYRCNAC  183 (540)
Q Consensus       171 ~~~d~G~Y~C~~~  183 (540)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1c5db1          86 QTEDTAIYFCTRE   98 (117)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEecc
Confidence            9999999999643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.65  E-value=0.00012  Score=52.44  Aligned_cols=69  Identities=14%  Similarity=0.321  Sum_probs=43.6

Q ss_pred             eeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          323 EQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ...|+..+|.|.+.|+ |. ..|+|.+||..+.............++.+  .+.|.+..   ++...|+|++.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            3457788999999996 43 37899999998865322111111222222  33566543   44568999999874

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.65  E-value=0.00014  Score=53.49  Aligned_cols=74  Identities=16%  Similarity=0.306  Sum_probs=48.4

Q ss_pred             CceeecCCCCeEEEEEEeccc-CCCeEEEEeC--CEE---ee-------ccCceEEEEecCCCeEEEEEEEeCCCCCCcE
Q psy670          214 PRIIPNESGTLIQMKCKCSAK-PRPEVKWFKA--DKL---VK-------ESSKIKIIVNEQDDTYEIICEITDPIGPDSG  280 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~--~~~---l~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  280 (540)
                      |..+.+.+|++++|.|..... ....+.||+.  ++.   +.       ............  .....|.|.+++.+|+|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITED--RKSSTLILPHATLRDTA   82 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTT--CSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeeccc--CCeeeehhcccccCCce
Confidence            445778899999999998653 3446899983  221   10       111222222222  23468999999999999


Q ss_pred             EEEEEEEcC
Q psy670          281 TYRCNVKNE  289 (540)
Q Consensus       281 ~y~C~~~~~  289 (540)
                      .|.|.+...
T Consensus        83 ~YyCa~~~~   91 (110)
T d2esvd1          83 VYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEeCC
Confidence            999987643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.65  E-value=0.00022  Score=53.45  Aligned_cols=74  Identities=18%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             ceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc-------------cC--CCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL-------------QQ--TDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~-------------~~--~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ..+...+|++++|.|.+.|..  ...+.|++-  |+.+             ..  ....++....+.......|.|.++.
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            345677899999999998753  346899872  2110             00  0111222333333335589999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|++.|.|.+..
T Consensus        89 ~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          89 KQDIATYYCALWE  101 (123)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeeeC
Confidence            9999999998644

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=6.7e-05  Score=55.92  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=45.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      +.+.+|++++|.|...+.....+.|||.  +..   +-         ...++...  .   ......|.|.+++.+|+|.
T Consensus        11 v~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~--~---~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--G---SGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             ECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E---EBTEEEEEECSCCGGGCSE
T ss_pred             EEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc--C---CCCEEEEEcccCccCCCeE
Confidence            4678999999999876544557999983  211   11         11222211  1   1123589999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|....
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998764

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.64  E-value=7.2e-05  Score=53.82  Aligned_cols=67  Identities=13%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             eceeecCCcEEEecCCCeEEEEEEEeeec-CC-ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeee
Q psy670          454 VPVIREVPKVVTISKKKTVVIECKVMSMY-EP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIV  522 (540)
Q Consensus       454 ~p~i~~~~~~~~~~~g~~~~l~C~v~g~p-~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~  522 (540)
                      +|.+...+.. .+..|+..+|.|.+.|+. .. .|+|++||+.+..+.. ........+|+|.....+...
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~-~~~~~~~~dgty~~~S~L~v~   73 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVS-ETVFLPRDDHLFRKFHYLTFL   73 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEE-ECCCEECSSSCEEEEEEEEEC
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcE-eCeEEECCCCcEEEEEEeEEc
Confidence            5655543221 134578889999999974 33 8999999998865422 222233446666655544433

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.64  E-value=5.5e-05  Score=55.79  Aligned_cols=72  Identities=18%  Similarity=0.399  Sum_probs=46.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e---cC------CCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I---ED------TGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~---~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      .+.+.+|++++|.|.........+.|||.  |+.   +   ..      ..++.....   .......|.|.+++.+|+|
T Consensus         9 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~---~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYN---KEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             EEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECB---TTTTBCCEEEEEECGGGCE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeec---CCCCEEeeeecCcCcCCCc
Confidence            35688999999999886555557999982  221   1   00      112211111   1111247999999999999


Q ss_pred             EEEEEEEcC
Q psy670          177 NYRCNACNS  185 (540)
Q Consensus       177 ~Y~C~~~~~  185 (540)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999987654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.64  E-value=7.3e-05  Score=54.68  Aligned_cols=68  Identities=19%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++|+|.|.........+.|||.  +..   +-         ...++....     ......|.|.+++.+|+|.
T Consensus        11 l~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1          11 MYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG-----SGQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc-----cCCEEEccccccCCcCCEE
Confidence            4678999999999886555567899983  211   10         012232221     1123489999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|....
T Consensus        86 YyCa~~~   92 (107)
T d1d5il1          86 YYCLQYD   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeecc
Confidence            9997654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00012  Score=53.32  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=49.2

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCC--CeEEEEEEEcCCceeEE
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDD--GGNYRCNACNSIGESNA  191 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~~~~~~~~~~~  191 (540)
                      ..+.++|.|.+.|+ |.. .|+|.++|..+.............+.....+.|.|.......  ...|+|.+.+..+....
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~   99 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEK   99 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEe
Confidence            45779999999885 543 899999887664432111111223444555688888766542  34899999988765544


Q ss_pred             EE
Q psy670          192 NI  193 (540)
Q Consensus       192 ~~  193 (540)
                      .+
T Consensus       100 ~v  101 (105)
T d1dn0b2         100 NV  101 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.63  E-value=0.00014  Score=52.98  Aligned_cols=69  Identities=16%  Similarity=0.359  Sum_probs=47.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+.+      ..          ..|+.+..+.   ...+..|.|.++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~---s~nt~~L~i~~l   85 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT---SKNQFSLKLSSV   85 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET---TTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccC---chheeccccccc
Confidence            4568899999999999887554  5889883  3221      11          2345554432   222347999999


Q ss_pred             CCCCCeEEEEEE
Q psy670          171 TKDDGGNYRCNA  182 (540)
Q Consensus       171 ~~~d~G~Y~C~~  182 (540)
                      +.+|++.|.|..
T Consensus        86 ~~eDtA~YYCAr   97 (120)
T d1dn0b1          86 TAADTAVYYCAR   97 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccccEEEEEe
Confidence            999999999954

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.63  E-value=9.5e-05  Score=54.27  Aligned_cols=73  Identities=22%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc-CCCeEEEEEC--CE---Ecc---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK-PMPEIVWFHE--GK---ELQ---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~-p~~~i~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..|....+.+|++++|.|..... ....+.|++-  |.   .+.         ...++..  ...+.  ...|.|.++..
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~--~~~~~--~~~L~I~~~~~   81 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSG--SGSGT--DFTLTISRLEP   81 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE--EEETT--EEEEEESSCCG
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceee--ecCCC--EEEEEehHhee
Confidence            44667778899999999987543 2346889873  22   110         1122222  22222  35899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+.+
T Consensus        82 ~Dsa~YyCa~~~   93 (108)
T d2fx7l1          82 EDFAVYYCQQYG   93 (108)
T ss_dssp             GGCSEEEEEECS
T ss_pred             cccEEEeeecCC
Confidence            999999998754

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=4.4e-05  Score=55.87  Aligned_cols=75  Identities=19%  Similarity=0.363  Sum_probs=49.6

Q ss_pred             eEEeeCCCeEEEEEEEEcc--CCCeEEEEEC--CEE----ccCC---Cc------eEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAK--PMPEIVWFHE--GKE----LQQT---DR------ISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~--p~~~i~W~~~--~~~----~~~~---~~------~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ...+.+|++++|.|...+.  ....+.|.+.  |+.    +...   ..      -++.+..+.......|+|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3457899999999998753  4557899983  221    1110   00      0122333444445689999999999


Q ss_pred             CeeEEEEEEcCC
Q psy670          383 TGLYKCNIKNFH  394 (540)
Q Consensus       383 ~G~Y~C~a~n~~  394 (540)
                      +|.|.|......
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999986543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.62  E-value=0.00012  Score=54.86  Aligned_cols=70  Identities=23%  Similarity=0.448  Sum_probs=46.0

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeC--CEee------cC-----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVI------ED-----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +...+|++++|.|.+.|..  ...+.|||.  |+.+      ..           ..++......   ......|.|.++
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~i~~l   87 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP---ETSTSTLTIHNV   87 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET---TTTEEEEEECSC
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec---cccceeeccccc
Confidence            4567899999999997753  346899982  2111      00           1233333221   112347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy670          171 TKDDGGNYRCNACN  184 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~  184 (540)
                      +.+|+|.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998753

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.62  E-value=0.00016  Score=53.37  Aligned_cols=76  Identities=13%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             ccCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---ee---------ccCceEEEEecCCCeEEEEEEEeCCCC
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---VK---------ESSKIKIIVNEQDDTYEIICEITDPIG  276 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~  276 (540)
                      ...|..+.+.+|++++|.|.........+.|++.  |..   +.         ...++.......  .....|.|.+++.
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~   81 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKS--AKHLSLHIVPSQP   81 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETT--TTEEEEEESSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEcc--CCEEEEEECCCcc
Confidence            3456667788999999999987655567889882  211   10         112222222222  2246899999999


Q ss_pred             CCcEEEEEEEEc
Q psy670          277 PDSGTYRCNVKN  288 (540)
Q Consensus       277 ~d~g~y~C~~~~  288 (540)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999997764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=4.2e-05  Score=57.49  Aligned_cols=73  Identities=22%  Similarity=0.366  Sum_probs=45.8

Q ss_pred             CccccCCCeEEEEEEEeec---C---CCceEEEeCCE----ee-----------cCCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEAS---P---MPDIIWYQGTK----VI-----------EDTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~---p---~~~v~W~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      .+.+.+|++|.|.|.+...   +   ...+.|++...    .+           ....+..+..+.   ....++|.|.+
T Consensus         9 ~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~sL~I~~   85 (118)
T d1qfoa_           9 NVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM---DHKVCNLLLKD   85 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCG---GGTBCCEEECS
T ss_pred             EEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeC---cCCEEEEEECC
Confidence            4568899999999998421   1   12356776321    11           012333333222   12234799999


Q ss_pred             CCCCCCeEEEEEEEcCC
Q psy670          170 PTKDDGGNYRCNACNSI  186 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~~  186 (540)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999997654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.62  E-value=7.5e-05  Score=53.14  Aligned_cols=69  Identities=12%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ..|..|+.|+|.|.. ......+.++|+|........  .  .........+.+.|.+++..|+|.|+|.....
T Consensus        11 ~~V~~G~~VTl~C~~-~~~~~~f~L~keg~~~~~~~~--~--~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWS-DVMFEHFLLHREGMFNDTLRL--I--GEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEE-SSCCSEEEEEEESSSCEEEEE--E--CEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECC-CCCCCEEEEEECCCcCCceee--e--eeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            467899999999997 345668899997643211000  0  00112334458999999999999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=4.2e-05  Score=57.47  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=46.5

Q ss_pred             CceEEeeCCCeEEEEEEEEcc---C---CCeEEEEECCEE----c---------cC--CCceEEEEEecCCeeEEEEEEc
Q psy670          318 PKIRSEQGGKLVVMECKVKAK---P---MPEIVWFHEGKE----L---------QQ--TDRISWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~---p---~~~i~W~~~~~~----~---------~~--~~~~~~~~~~~~~~~~~~L~i~  376 (540)
                      |..+.+.+|+.|.|.|.+...   +   ...+.|++....    +         ..  ..+..+  ..+.....++|.|.
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~sL~I~   84 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL--MGNMDHKVCNLLLK   84 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEE--CSCGGGTBCCEEEC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEE--EEeCcCCEEEEEEC
Confidence            556778999999999998631   1   124567763221    1         00  112222  11111223379999


Q ss_pred             CCCCCCCeeEEEEEEcCC
Q psy670          377 DPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~~  394 (540)
                      +++.+|+|.|.|++....
T Consensus        85 ~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             SCCGGGCEEEEEEEECC-
T ss_pred             CCChhHCEEEEEEEEeCC
Confidence            999999999999997654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.62  E-value=8.6e-05  Score=54.56  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=45.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CE---eec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TK---VIE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++++|.|...+.....+.||+.  ++   .+-         ...++....     ......|.|.+++.+|+|.
T Consensus        13 l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_          13 LSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG-----SGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC-----CCCEeEEEEeeceeCcCce
Confidence            5678999999999986555567899982  21   110         112222221     1123479999999999999


Q ss_pred             EEEEEEc
Q psy670          178 YRCNACN  184 (540)
Q Consensus       178 Y~C~~~~  184 (540)
                      |.|.+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9998654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.61  E-value=3e-05  Score=57.37  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=46.3

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .+.+.+|++++|.|...+..  ...+.||+.  +..   +.         ...++....     +...+.|.|.+++.+|
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK-----SGTSATLGITGLQTGD   83 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEESSCCGGG
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC-----CCCEeeeEEeeecccc
Confidence            36788999999999885432  345999972  211   10         112332222     1123589999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (111)
T d1rzfl1          84 EADYYCGTWDS   94 (111)
T ss_dssp             CSEEEEEEEET
T ss_pred             CcceEEeecCC
Confidence            99999987643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.61  E-value=0.00034  Score=51.38  Aligned_cols=76  Identities=16%  Similarity=0.362  Sum_probs=48.4

Q ss_pred             EEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc---c----C--------CCceEEEEEecCCeeEEEEEEc
Q psy670          314 FIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL---Q----Q--------TDRISWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       314 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~---~----~--------~~~~~~~~~~~~~~~~~~L~i~  376 (540)
                      +...|....+.+|++++|.|.... ....+.|++-  |...   .    .        ..++... .....  ...|.|.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~L~I~   79 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEAS-RPSQE--QFSLILE   79 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEE-EEETT--EEEEEES
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEE-eccCC--EEEEEEC
Confidence            344466777889999999998754 3457999982  2110   0    0        0111111 11111  3489999


Q ss_pred             CCCCCCCeeEEEEEEcC
Q psy670          377 DPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n~  393 (540)
                      +++.+|+|.|.|.+...
T Consensus        80 ~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          80 SATPSQTSVYFCASGGG   96 (110)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCCHhhCEEEEEeeCCC
Confidence            99999999999987643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.61  E-value=3.4e-05  Score=56.49  Aligned_cols=72  Identities=18%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc----------c--CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL----------Q--QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~----------~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..|..+.+.+|++++|.|.........+.|++-  |...          .  ...++..  ...+.  ...|.|.+++.+
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~--~~~~~--~~~L~I~~~~~~   81 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSG--SGSGT--DYSLTISNLEPE   81 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCC--EEETT--EEEEECSCCCSC
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEE--EccCC--EEEEEEeEeeec
Confidence            345566788999999999977665667999972  2110          0  0112211  11222  348999999999


Q ss_pred             CCeeEEEEEE
Q psy670          382 DTGLYKCNIK  391 (540)
Q Consensus       382 d~G~Y~C~a~  391 (540)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (107)
T d3cx5k1          82 DIATYFCQHH   91 (107)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcEEeeeC
Confidence            9999999764

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.61  E-value=0.00012  Score=52.92  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=49.2

Q ss_pred             ceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEE------c---------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKE------L---------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|..  ...+.|.+-  |+.      +         .+.-+-++.+..+....+..|.|++++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~   87 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR   87 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC
Confidence            345677899999999999865  346788762  211      1         111122334444555556689999999


Q ss_pred             CCCCeeEEEEEE
Q psy670          380 KEDTGLYKCNIK  391 (540)
Q Consensus       380 ~~d~G~Y~C~a~  391 (540)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (117)
T d1jpth1          88 AEDTAVYYCARD   99 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEeec
Confidence            999999999653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.61  E-value=0.00022  Score=52.00  Aligned_cols=73  Identities=15%  Similarity=0.358  Sum_probs=49.4

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEEc------c--------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKEL------Q--------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ...+.+|++++|+|.+.|....  .+.|++-  |+.+      .        +.-+-++.+..+....+..|.|++++.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e   87 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD   87 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence            3457789999999999986543  5788872  1111      1        1111123444555555668999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |++.|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997644

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.61  E-value=6.6e-05  Score=53.90  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      ..|..|+.|+|.|.. ..+...+.|+|+|...........      .....+.+.|..+...|+|.|+|.....
T Consensus        15 ~~V~~G~~VTL~C~~-~~~~~~f~L~k~g~~~~~~~~~~~------~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          15 PTVLAGENVTLSCSS-RSSYDMYHLSREGEAHERRLPAGP------KVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SEECTTCEEEEEEEE-SSCCSEEEEEETTCSSCEEEECEE------EETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CcccCCCeEEEEECC-CCCccEEEEEECCCccccEEEccc------cCCccEEEEEeccccccCEEEEEEeecC
Confidence            367899999999987 445668999998854321110000      0111225667777788999999986543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.61  E-value=7.3e-05  Score=55.09  Aligned_cols=77  Identities=13%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+..+.+.+|++++|.|.........+.|++-  |..+.            ...++....  ........|.|.++..
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATY--NKEATSFHLQKASVQE   81 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEC--BTTTTBCCEEEEEECG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeee--cCCCCEEeeeecCcCc
Confidence            3446667889999999999987655567999982  21110            011122111  1222234799999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          82 SDSAVYYCALSGG   94 (110)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCcccceeecCC
Confidence            9999999987653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.60  E-value=6.2e-05  Score=53.66  Aligned_cols=68  Identities=15%  Similarity=0.250  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .++.++|.|.+.|+ |.. .+.|++++..+..........+..+.....+.|.|..   ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            35679999999885 655 8999999988755433333444445555566788875   34557999998864

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=5.2e-05  Score=55.56  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEec--CC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLK--GD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~--~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .+..++|.|.+.++ |. ..|.|.+||..+............+  +. ...+.|.|..-.......|+|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            46789999999985 43 4899999999876432211111112  22 23457787766555567899999986543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.60  E-value=0.00015  Score=52.62  Aligned_cols=72  Identities=18%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+   +......|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD---~s~nt~~L~~~s   85 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD---NAKNSLYLQMSK   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC---SSSCEEEEEECS
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeec---Cccceeeccccc
Confidence            4678899999999999887544  5788872  3211      1 1          134444432   222345799999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy670          170 PTKDDGGNYRCNACNS  185 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~  185 (540)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          86 VRSEDTALYYCARLHY  101 (118)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             cCCCcceEEEeeEecC
Confidence            9999999999986543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00017  Score=52.10  Aligned_cols=71  Identities=20%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|.  |+.      +. .          ..|+.+..+.   ...+..|.+.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~---s~nt~yL~m~~   85 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADN---SKNTAYLQMNS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecc---ccceEEecccc
Confidence            4678899999999999886543  5788872  221      11 1          2444454432   22234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          86 LRAEDTAVYYCARDT  100 (117)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCceEEEEeecC
Confidence            999999999997543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.59  E-value=7.4e-05  Score=55.39  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEee----cCCCceE----EEEeecCcceEEEEEEEcCCCCCCCeEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI----EDTGRIK----MSKKSIGKDTYLLRLEINNPTKDDGGNYRC  180 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~----~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  180 (540)
                      ...+.+|++++|.|.... ....+.|||.  +..+    .......    ............+.|.|.+++.+|+|.|.|
T Consensus        10 ~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          10 ALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            356789999999999853 3457999982  2111    0000000    001111122234589999999999999999


Q ss_pred             EEEcCC
Q psy670          181 NACNSI  186 (540)
Q Consensus       181 ~~~~~~  186 (540)
                      .+....
T Consensus        89 a~~~~~   94 (113)
T d1h5ba_          89 AAEASS   94 (113)
T ss_dssp             EEECSS
T ss_pred             EecCCC
Confidence            987543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.59  E-value=0.00014  Score=53.01  Aligned_cols=72  Identities=11%  Similarity=0.338  Sum_probs=49.2

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|+...  -+.|+|.  |+.+      . .          ..|+.+..+.   ...+..|.|.
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~---s~ntvyL~~~   85 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDT---SATTAYMGLS   85 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEET---TTTEEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccC---Ccceeeeccc
Confidence            45678999999999999886544  4788872  2211      1 1          1344444432   2223479999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy670          169 NPTKDDGGNYRCNACN  184 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~  184 (540)
                      +++.+|++.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997653

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.59  E-value=0.00016  Score=52.59  Aligned_cols=70  Identities=17%  Similarity=0.416  Sum_probs=48.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC---ceEEEe--CCEee------cC----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP---DIIWYQ--GTKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~---~v~W~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...   .+.|+|  .|+-+      ..          ..|+.+..+.   ......|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~---s~nt~~L~~~s   85 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDT---SKNQFFLQLNS   85 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccc---ccceeeccccc
Confidence            4678899999999999987653   368987  33322      11          1344444332   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1ncwh1          86 VTTEDTATYYCAGL   99 (119)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccCCceEEEEeEe
Confidence            99999999999754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.59  E-value=9.5e-05  Score=54.67  Aligned_cols=71  Identities=23%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             CccccCCCeEEEEEEEeec---CCCceEEEeC--CEee---c---------CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS---PMPDIIWYQG--TKVI---E---------DTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~---p~~~v~W~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ...+.+|++|+|.|...+.   ....+.|||.  ++..   .         ...++....  ..   ....|.|.+++.+
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~l~~~   83 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SG---NSASLTISGLQAE   83 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ET---TEEEEEECSCCGG
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CC---CEeeEEeCcCccc
Confidence            3568899999999998553   2345899982  2211   0         112222211  11   1348999999999


Q ss_pred             CCeEEEEEEEcCC
Q psy670          174 DGGNYRCNACNSI  186 (540)
Q Consensus       174 d~G~Y~C~~~~~~  186 (540)
                      |+|.|.|.+....
T Consensus        84 Dsa~YyCa~~~~~   96 (112)
T d1lgva1          84 DEADYYCSSYDGS   96 (112)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cCEEEEEeeecCC
Confidence            9999999876543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=0.00015  Score=52.44  Aligned_cols=71  Identities=21%  Similarity=0.414  Sum_probs=48.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc--------------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL--------------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++.  |+.+              .+.-+-++.+..+....+..|.|++++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            345778999999999998654  35788872  2211              11112233444555555668999999999


Q ss_pred             CCeeEEEEE
Q psy670          382 DTGLYKCNI  390 (540)
Q Consensus       382 d~G~Y~C~a  390 (540)
                      |++.|.|..
T Consensus        89 DtAvYYCAr   97 (117)
T d1c5db1          89 DTAIYFCTR   97 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999964

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.58  E-value=0.00013  Score=52.87  Aligned_cols=74  Identities=23%  Similarity=0.396  Sum_probs=49.3

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|+..  ..+.|++-  |+.+      .         +..+-++.+..+....+..|.|++++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            345778999999999998643  35788772  2211      1         111122334445555566899999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999986543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.58  E-value=0.0001  Score=54.01  Aligned_cols=70  Identities=21%  Similarity=0.397  Sum_probs=47.0

Q ss_pred             CccccCCCeEEEEEEEeecCC--CceEEEeC--CEee------cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPM--PDIIWYQG--TKVI------ED-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|...  -.+.|+|.  |+.+      ..           ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~---s~~~~~L~i~~   85 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEK---SSSTVYLEFSR   85 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEET---TTTEEEEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeeccc---ccceeeeeecc
Confidence            356889999999999987643  35889882  3221      10           1344444322   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          86 LTSDDSAVYYCAIH   99 (119)
T ss_dssp             ECGGGCEEEEEEEC
T ss_pred             cCccceeEEEEEEe
Confidence            99999999999754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00012  Score=54.04  Aligned_cols=69  Identities=16%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             EEeeCCCeEEEEEEEEccCC---CeEE--EEECCEEc-c---------C--CCce--EEEEEecCCeeEEEEEEcCCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM---PEIV--WFHEGKEL-Q---------Q--TDRI--SWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~---~~i~--W~~~~~~~-~---------~--~~~~--~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      +.+..|++++|.|.....+.   ..+.  |.+++... .         .  ..++  +.....+.    .+|.|.+++.+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~----~sL~I~~v~~~   79 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS----WTLRLHNLQIK   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTT----TEEEECSCCGG
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCe----EEEEECCCChh
Confidence            45678999999999864322   2333  44432211 0         0  0111  11111111    27999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+...
T Consensus        80 D~G~Y~C~V~~~   91 (110)
T d1ncna_          80 DKGLYQCIIHHK   91 (110)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             HCEEEEEEEEec
Confidence            999999998644

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.57  E-value=0.00017  Score=51.38  Aligned_cols=73  Identities=18%  Similarity=0.353  Sum_probs=49.4

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------c-----------cCCCceEEEEEecCCeeEEEEEEcC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------L-----------QQTDRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      ....+.+|++++|+|.+.|...  ..+.|.+-  |+.      +           ...-+-++.+..+....+..|.|++
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            3456788999999999998653  35788762  211      1           1111113344555555667899999


Q ss_pred             CCCCCCeeEEEEEE
Q psy670          378 PRKEDTGLYKCNIK  391 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~  391 (540)
                      ++.+|++.|.|.-.
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999743

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00015  Score=52.68  Aligned_cols=66  Identities=21%  Similarity=0.339  Sum_probs=42.9

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-------c--CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-------E--DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++++|.|... .....+.||+.  +..   +       .  ...++....     ....++|.|.+++.+|+|.
T Consensus        10 l~~~~G~~vtl~C~~s-~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1          10 MSASPGEKVTMTCSAS-SSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG-----SGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             EEECTTCCEEEEEEES-SCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeC-CCCCccEEEEeeccCceEEEEecccccCCCcCceEEEec-----CCCEEEEEecccCcccCCe
Confidence            4678999999999863 33446899983  111   1       0  011222111     1123589999999999999


Q ss_pred             EEEEEE
Q psy670          178 YRCNAC  183 (540)
Q Consensus       178 Y~C~~~  183 (540)
                      |.|...
T Consensus        84 YyCa~~   89 (104)
T d1yqvl1          84 YYCQQW   89 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999764

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.57  E-value=0.00011  Score=53.72  Aligned_cols=76  Identities=13%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             CccccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCce
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIGE  188 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  188 (540)
                      ...+..+..++|.|.+.++ |.. .|.|+++|..+.............+.....+.|.|..-..  ...|+|.+.+....
T Consensus        18 ~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          18 IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            3446678889999999875 444 7999999987754432222222333444456788866443  33799999986543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00018  Score=52.13  Aligned_cols=72  Identities=17%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|++++|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+.   ......|.|.
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~---s~~t~~L~m~   83 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDK---SSNTAYLELS   83 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEET---TTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEecc---CceeEeeccc
Confidence            35678899999999999886544  5889883  3221      1 1          1344444332   1223479999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy670          169 NPTKDDGGNYRCNACN  184 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~  184 (540)
                      +++.+|++.|.|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDSAVYYCARSS   99 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccCCCcceEEEEeecc
Confidence            9999999999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.57  E-value=0.00015  Score=52.26  Aligned_cols=69  Identities=20%  Similarity=0.384  Sum_probs=47.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+-      +. .          ..|+.+..+.   ......|.|.+
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~---s~nt~~L~~~~   85 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDN---AQNNLYLQLNS   85 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccC---ccceeeeeeee
Confidence            4578899999999999886543  5788872  221      11 1          1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCA~   98 (114)
T d1indh1          86 LRSEDTALYFCAS   98 (114)
T ss_dssp             CCGGGCEEEEEEC
T ss_pred             eccCcccEEEECC
Confidence            9999999999974

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.57  E-value=0.0002  Score=51.26  Aligned_cols=70  Identities=14%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             ccCCCeEEEEEEEeec-CC-CceEEEeCCEeecCCC-ceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          114 HQDGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTG-RIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ...|+..+|.|.+.|+ |. ..++|.+||+.+..+. ......+..+.....+.|.+..   .+...|+|.+.+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            3457788999999886 44 3799999999886432 1112223333444455677764   34557999998864

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2.9e-05  Score=56.98  Aligned_cols=58  Identities=12%  Similarity=0.216  Sum_probs=34.3

Q ss_pred             CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeee
Q psy670          468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKR  525 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~  525 (540)
                      .++.++|.|.+.|+.+.  .|+|++||..+..............+|+|+..-.+.....+
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~   78 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDE   78 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHH
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHH
Confidence            46789999999996433  89999999887643221111222334555544444333333

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.56  E-value=2.3e-05  Score=57.47  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c--------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..+.+|++++|.|.........+.|||.  ++.   + .        ...+.....     ......|.|.+++.+|+|.
T Consensus        10 l~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN-----SGNMATLTISRVEAGDEAD   84 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec-----CCCccceEEeeeccCCCEE
Confidence            5678999999999875444457999973  221   1 0        012222211     1223489999999999999


Q ss_pred             EEEEEEcC
Q psy670          178 YRCNACNS  185 (540)
Q Consensus       178 Y~C~~~~~  185 (540)
                      |.|.+...
T Consensus        85 YyCA~~~~   92 (109)
T d1w72l1          85 YYCQVWDS   92 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEecCC
Confidence            99987643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.56  E-value=0.00014  Score=52.58  Aligned_cols=71  Identities=20%  Similarity=0.390  Sum_probs=48.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+-+      ..          ..|+.+..+   +...+..|.|.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D---~s~n~~~L~~~~l   85 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD---NSKSQVFLKMNSL   85 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE---GGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc---CCCceEEcceeee
Confidence            4568899999999999886544  5788873  2221      11          124444433   2222347999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy670          171 TKDDGGNYRCNACN  184 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~  184 (540)
                      +.+|++.|.|....
T Consensus        86 ~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          86 HTDDTARYYCARER   99 (116)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             eeccceEEEEEEeC
Confidence            99999999998543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.56  E-value=4.5e-06  Score=59.98  Aligned_cols=72  Identities=19%  Similarity=0.435  Sum_probs=46.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCCCeE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGN  177 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  177 (540)
                      ..|.+|++|+|.|.... ....+.|||.  |+.+.            ...++....+   .......|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLD---TSKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCB---GGGTBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeecc---CcceecccCcCCCCcccCEE
Confidence            45789999999998743 3347999983  22211            1122222211   11223479999999999999


Q ss_pred             EEEEEEcCCc
Q psy670          178 YRCNACNSIG  187 (540)
Q Consensus       178 Y~C~~~~~~~  187 (540)
                      |.|.+....+
T Consensus        79 YyCA~~~~~g   88 (96)
T d1ymmd1          79 YFCATDTTSG   88 (96)
T ss_dssp             CEEEEEETTS
T ss_pred             EeEeEecCCC
Confidence            9998875544

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.56  E-value=0.00014  Score=54.41  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             CccccCCCeEEEEEEEeecC--CCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEASP--MPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .+.+.+|++++|.|...+..  ...+.|||.  |+.   +-         ...++....+.   ......|.|.+++.+|
T Consensus        10 sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~---~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1          10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI---AKNLAVLKILAPSERD   86 (120)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG---GGTEEEEEESSCCGGG
T ss_pred             CEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccc---cccceecccccccccC
Confidence            35678999999999986543  346899982  221   10         11233333322   1124589999999999


Q ss_pred             CeEEEEEEEc
Q psy670          175 GGNYRCNACN  184 (540)
Q Consensus       175 ~G~Y~C~~~~  184 (540)
                      +|.|.|....
T Consensus        87 sa~YyCA~~~   96 (120)
T d1hxma1          87 EGSYYCACDT   96 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             CceeecCccc
Confidence            9999998764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=0.00014  Score=52.63  Aligned_cols=71  Identities=21%  Similarity=0.406  Sum_probs=47.6

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-CC--------CceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-QT--------DRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~~--------~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|++++|+|.+.|...  ..+.|.+-  |+.      +. ..        -+-++.+..+....+..|.|++++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            3455788999999999998653  35788762  211      11 11        112334444555556689999999


Q ss_pred             CCCCeeEEEE
Q psy670          380 KEDTGLYKCN  389 (540)
Q Consensus       380 ~~d~G~Y~C~  389 (540)
                      .+|++.|.|.
T Consensus        88 ~eDtAvYYCA   97 (118)
T d1nlbh1          88 NEDTATYFCA   97 (118)
T ss_dssp             GGGCEEEEEE
T ss_pred             cCcceEEEEe
Confidence            9999999995

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.00012  Score=53.07  Aligned_cols=69  Identities=17%  Similarity=0.365  Sum_probs=46.4

Q ss_pred             CccccCCCeEEEEEEEeecCC--CceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPM--PDIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~--~~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|...  -.+.|+|.  |+.+      . .          ..|+.+..+.   ......|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~---s~~t~~L~i~~   85 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDK---SSSTAFMHLNS   85 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEET---TTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeecc---CceeeEeeeee
Confidence            456889999999999987643  35889872  3221      1 1          1234343321   12234799999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999964

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.56  E-value=0.00012  Score=52.94  Aligned_cols=69  Identities=20%  Similarity=0.472  Sum_probs=47.2

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-      +. .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~---s~~tvyL~~~~   85 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLET---SASTAYLQINS   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecC---CceeEEeeeee
Confidence            4568899999999999886543  5889872  321      11 1          2344444432   22234799999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (118)
T d1nlbh1          86 LKNEDTATYFCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEee
Confidence            9999999999964

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00014  Score=52.81  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=48.0

Q ss_pred             EeeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCC--CeeEEEEEEcCCee
Q psy670          322 SEQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKED--TGLYKCNIKNFHGE  396 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d--~G~Y~C~a~n~~g~  396 (540)
                      .....+.++|.|.+.++ |. ..|.|.++|..........-....++. ...+.|+|.......  ...|+|.|.+..+.
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            34456789999999985 54 479999998766442211111223332 224578887666532  34799999998776


Q ss_pred             eEEEE
Q psy670          397 LNANL  401 (540)
Q Consensus       397 ~~~~~  401 (540)
                      ....+
T Consensus        97 ~~~~v  101 (105)
T d1dn0b2          97 KEKNV  101 (105)
T ss_dssp             EEEEE
T ss_pred             EEeEE
Confidence            55544

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.56  E-value=0.00041  Score=49.82  Aligned_cols=72  Identities=14%  Similarity=0.240  Sum_probs=46.5

Q ss_pred             eeCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          323 EQGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      +..|+..+|.|.+.|+ |. ..|.|.+||..+........ ...+++.+  .+.|.+..   ++...|+|.+.+..-...
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~-~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p   90 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFV-SAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYT   90 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEE-EEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceE-EeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCCC
Confidence            3468888999999995 43 37899999998754433322 22333333  33566643   445679999999764443

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.56  E-value=0.00023  Score=51.56  Aligned_cols=74  Identities=16%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c--------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q--------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.+      .        +.-+-++.+..+....+..|.|++++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            345778999999999998654  36788872  2211      1        1111122334444555668999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |++.|.|.....
T Consensus        89 DtAvYyCAr~~~  100 (116)
T d7fabh1          89 DTAVYYCARNLI  100 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cceEEEeeeecC
Confidence            999999976443

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.55  E-value=7.4e-05  Score=55.22  Aligned_cols=69  Identities=17%  Similarity=0.411  Sum_probs=43.9

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------C----------CCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------D----------TGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      .++.+|++++|.|...+ ....+.|||.  |+.+.      .          ..++...  .  .....+.|.|.+++.+
T Consensus         9 ~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~--~--~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           9 SVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAE--R--TGGTYSTLKVQPAELE   83 (111)
T ss_dssp             EEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEE--C--TTSSSEEEEESSCCGG
T ss_pred             EEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEE--c--CCCCEEEEEECCcccC
Confidence            46789999999998532 3457999983  22110      0          1111111  1  1112348999999999


Q ss_pred             CCeEEEEEEEcC
Q psy670          174 DGGNYRCNACNS  185 (540)
Q Consensus       174 d~G~Y~C~~~~~  185 (540)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (111)
T d2esve1          84 DSGVYFCASSQD   95 (111)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCceEEEeeeCC
Confidence            999999987643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.0002  Score=51.77  Aligned_cols=72  Identities=17%  Similarity=0.342  Sum_probs=48.5

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------c---------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------L---------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|....  .+.|++-  |+.      +         .+.-+-++.+..+....+..|.|++++
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~   87 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT   87 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC
Confidence            34556789999999999986543  5788771  211      1         111122334444555556689999999


Q ss_pred             CCCCeeEEEEE
Q psy670          380 KEDTGLYKCNI  390 (540)
Q Consensus       380 ~~d~G~Y~C~a  390 (540)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1jnhb1          88 SEDSAVYSCSR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999964

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=5.3e-05  Score=54.96  Aligned_cols=72  Identities=14%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCce-EEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRI-KMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      .++.++|.|.+.++ |.. .|.|++||..+..+... .......+.....+.|.|..........|+|.+.+...
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            35679999999885 433 79999999988654221 11222334445566888876555556689999998754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.00016  Score=52.14  Aligned_cols=74  Identities=16%  Similarity=0.342  Sum_probs=49.8

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-CCC--------ceEEEEEecCCeeEEEEEEcC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-QTD--------RISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~~~--------~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      .+....+.+|+++.|+|.+.|...  ..+.|.+-  |+.      +. ...        +-++.+..+....+..|.|++
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            345567889999999999998654  35778761  211      11 111        113334445555566899999


Q ss_pred             CCCCCCeeEEEEE
Q psy670          378 PRKEDTGLYKCNI  390 (540)
Q Consensus       378 ~~~~d~G~Y~C~a  390 (540)
                      ++.+|.+.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (116)
T d1mjuh1          86 LTSDDSAVYYCAN   98 (116)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEcc
Confidence            9999999999964

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.55  E-value=0.00012  Score=54.06  Aligned_cols=73  Identities=15%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccC-CCeEEEEEC--CEEcc----------CCCceEEEEEecCCeeEEEEEEcCCCCCCCe
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP-MPEIVWFHE--GKELQ----------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p-~~~i~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  384 (540)
                      |..+.+.+|++++|.|...+.. ...+.|++-  |..+.          .....+.....  ......|.|.++..+|+|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE--DRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT--TSSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecc--cCCeeEEEEeecccccce
Confidence            4556788999999999986544 345899982  22111          11112222222  233458999999999999


Q ss_pred             eEEEEEEc
Q psy670          385 LYKCNIKN  392 (540)
Q Consensus       385 ~Y~C~a~n  392 (540)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.55  E-value=0.00023  Score=52.23  Aligned_cols=72  Identities=17%  Similarity=0.338  Sum_probs=46.6

Q ss_pred             EEeeCCCeEEEEEEEEccCC----CeEEEEEC--CEEcc--------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM----PEIVWFHE--GKELQ--------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~----~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..+.+|++++|.|.+.|...    ..+.|++-  |+.+.              +.-+-++.+..+.......|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            34677999999999987532    35789972  22110              000112333334444456899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999996443

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.54  E-value=9.2e-05  Score=52.79  Aligned_cols=68  Identities=24%  Similarity=0.432  Sum_probs=44.4

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCCC
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      ..+++|++++|+|.+.|+.  .-.+.|+|.  |+-+      ..          ..|+.+..+.   ......|+|.+++
T Consensus         3 ~lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~---s~n~~~L~i~~l~   79 (107)
T d1sjva_           3 GLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDN---AKKTVYLEMNSLE   79 (107)
T ss_dssp             CCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECT---TTCCEEEEECSCC
T ss_pred             CEecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCC---ceeEEEEeecCCC
Confidence            4578999999999997753  335789873  2211      11          1344444432   2223479999999


Q ss_pred             CCCCeEEEEEE
Q psy670          172 KDDGGNYRCNA  182 (540)
Q Consensus       172 ~~d~G~Y~C~~  182 (540)
                      .+|++.|.|..
T Consensus        80 ~eDtAvYyCA~   90 (107)
T d1sjva_          80 PEDTAVYYCYT   90 (107)
T ss_dssp             GGGCSEEEEEE
T ss_pred             cccceeeeEec
Confidence            99999999965

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.00014  Score=53.30  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             ccccCCCeEEEEEEEeecCCC---ceEEEe--CCEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMP---DIIWYQ--GTKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~---~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      ..+.+|++++|.|...+....   .+.|||  .|+...            ...++.....  .   ..+.|.|.+++.+|
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~--~---~~~~L~I~~~~~~D   84 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI--G---NKAALTITGAQTED   84 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE--T---TEEEEEEESCCGGG
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc--c---cceeeecCCCCccc
Confidence            457899999999999543322   389998  222210            1123333221  1   23589999999999


Q ss_pred             CeEEEEEEEc
Q psy670          175 GGNYRCNACN  184 (540)
Q Consensus       175 ~G~Y~C~~~~  184 (540)
                      +|.|.|....
T Consensus        85 sa~YyCa~~~   94 (110)
T d1oaql_          85 EAIYFCALWY   94 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             cEeEEEEccc
Confidence            9999998764

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.9e-05  Score=55.72  Aligned_cols=71  Identities=11%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .++.++|.|.+.|+ |.. .|.|+++|................+.....+.|.|..-....+..|+|.|.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999885 543 899999998765432222222333444556788888766556668999999865

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.54  E-value=0.00022  Score=52.17  Aligned_cols=70  Identities=14%  Similarity=0.318  Sum_probs=47.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|....  .+.|+|.  |+.+      . .          ..|+.+..+.   ......|.|.+
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~---s~n~v~L~i~~   85 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDR---SSTTAYIELVR   85 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeecc---CcceEEccccc
Confidence            4568899999999999876433  5789882  3321      1 1          1344444332   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999864

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.54  E-value=0.00016  Score=51.52  Aligned_cols=69  Identities=13%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CCCeEEEEEEEEccCC--CeEEEEECCEEccCCCceEEEEEecCCeeE--EEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAKPM--PEIVWFHEGKELQQTDRISWNVTLKGDKYH--IRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++..+|.|.+.|+.+  ..|.|.++|..+............+.+.+.  +.|.+   ...+...|+|.+.+....
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTCS
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCCC
Confidence            4667789999998533  479999999887654221111112222233  23443   456677899999987543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.54  E-value=0.00016  Score=53.19  Aligned_cols=75  Identities=17%  Similarity=0.364  Sum_probs=47.3

Q ss_pred             CCceEEeeCCCeEEEEEEEEcc----CCCeEEEEEC--CEEcc----------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAK----PMPEIVWFHE--GKELQ----------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~----p~~~i~W~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .|..+.+.+|++++|.|.....    ....+.|++-  |....          .....+....  .......|.|.+++.
T Consensus         7 sP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT--GSRTDFTLIIDPVEA   84 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe--cCCCEEEEEEccccc
Confidence            3556778899999999987432    2234899972  22110          0011111222  223345899999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|+|.|.|.+.+.
T Consensus        85 ~Dsa~YyCa~~~~   97 (111)
T d1j05a_          85 DDVATYYCQQTNE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             ccCccEEEeecCC
Confidence            9999999987543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.54  E-value=0.0002  Score=52.22  Aligned_cols=70  Identities=17%  Similarity=0.356  Sum_probs=47.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEEc------c--------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKEL------Q--------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ...+.+|++++|+|.+.|....  .+.|++-  |+.+      .        +.-+-++.+..+....+..|.|++++.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e   88 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence            3457789999999999986543  5788872  2211      1        1111223444455555668999999999


Q ss_pred             CCeeEEEE
Q psy670          382 DTGLYKCN  389 (540)
Q Consensus       382 d~G~Y~C~  389 (540)
                      |++.|.|.
T Consensus        89 DtA~YYCA   96 (120)
T d1dn0b1          89 DTAVYYCA   96 (120)
T ss_dssp             GCEEEEEE
T ss_pred             cccEEEEE
Confidence            99999994

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.54  E-value=0.00015  Score=52.49  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------cc-CC--------CceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------LQ-QT--------DRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~~-~~--------~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|....  .+.|.+-  |+.      +. ..        -+-++.+..+....+..|.|+++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL   86 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccc
Confidence            344557789999999999987543  5788772  221      11 11        11123344444455668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|++.|.|.-
T Consensus        87 ~~eDTAvYYCAr   98 (118)
T d2jelh1          87 TSEDSAIYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceeeeEEE
Confidence            999999999953

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.53  E-value=7.9e-05  Score=54.71  Aligned_cols=69  Identities=19%  Similarity=0.284  Sum_probs=44.9

Q ss_pred             CccccCCCeEEEEEEEeec-CCCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          111 PTIHQDGDLLVMECVLEAS-PMPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~-p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      ...+.+|++++|.|..... ....+.|||.  +..   +-         ...++....     ....+.|.|.+++.+|+
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~-----~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG-----SGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGGC
T ss_pred             eEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec-----CCCEEEEEehHheeccc
Confidence            3567899999999987443 2346889983  221   10         112222211     11235899999999999


Q ss_pred             eEEEEEEEc
Q psy670          176 GNYRCNACN  184 (540)
Q Consensus       176 G~Y~C~~~~  184 (540)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (108)
T d2fx7l1          85 AVYYCQQYG   93 (108)
T ss_dssp             SEEEEEECS
T ss_pred             EEEeeecCC
Confidence            999998753

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.53  E-value=0.00012  Score=51.94  Aligned_cols=59  Identities=8%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeC
Q psy670          468 KKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRG  526 (540)
Q Consensus       468 ~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~  526 (540)
                      .++.++|.|.+.|+-+.  .|+|++||..+..+...........+|+|.....+.....++
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~   74 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEE   74 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCG
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCC
Confidence            35678999999996444  899999999887654433333445567777655554433333

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.53  E-value=0.00015  Score=53.49  Aligned_cols=70  Identities=17%  Similarity=0.325  Sum_probs=46.8

Q ss_pred             ccccCCCeEEEEEEEeecC--CCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASP--MPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTKDDG  175 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p--~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  175 (540)
                      ..+.+|++++|.|...+..  ..-+.|||.  ++.+            ....++....+.   ....+.|.|.+++.+|+
T Consensus        10 ~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_          10 VSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDR---SSNSASLTISGLKTEDE   86 (111)
T ss_dssp             EEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TTTEEEEEECSCCGGGC
T ss_pred             eEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecC---CCCccccccccCCcccC
Confidence            5688999999999986543  235899983  2221            011333333322   12245899999999999


Q ss_pred             eEEEEEEEc
Q psy670          176 GNYRCNACN  184 (540)
Q Consensus       176 G~Y~C~~~~  184 (540)
                      |.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999998654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.4e-05  Score=56.60  Aligned_cols=65  Identities=15%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             CCCeEEEEEEEeee-cCC-ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeEEE
Q psy670          468 KKKTVVIECKVMSM-YEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIKII  532 (540)
Q Consensus       468 ~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~~~  532 (540)
                      .++.++|.|.+.|+ |.. .|+|++||..+..............+|+|+..-.+.....++..+..+
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y   85 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY   85 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEE
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEE
Confidence            36789999999996 443 899999998776543222222233456666555554444444444333

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.00017  Score=52.37  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             eEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------c-CCC--------ceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------Q-QTD--------RISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------~-~~~--------~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|..  ...+.|++-  |+.+      . .+.        +-++.+..+....+..|.|++++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            34577899999999999864  335788762  2211      1 111        112333344444456899999999


Q ss_pred             CCCeeEEEEE
Q psy670          381 EDTGLYKCNI  390 (540)
Q Consensus       381 ~d~G~Y~C~a  390 (540)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.53  E-value=0.0002  Score=51.75  Aligned_cols=73  Identities=16%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c--------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q--------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++.  |+.+      .        +.-+-++.+..+....+..|.|++++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            345678999999999998654  35788872  2211      1        1112233444455555668999999999


Q ss_pred             CCeeEEEEEEc
Q psy670          382 DTGLYKCNIKN  392 (540)
Q Consensus       382 d~G~Y~C~a~n  392 (540)
                      |.+.|.|.-..
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999997543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00024  Score=51.42  Aligned_cols=70  Identities=14%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~---s~~t~yLq~~~   85 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADR---SSSIVYLQLNS   85 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccC---ccceeeecccc
Confidence            4567899999999999887554  5789872  2211      1 1          1345554432   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          86 LTSEDSAVYSCSRG   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999753

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.52  E-value=0.00021  Score=51.79  Aligned_cols=71  Identities=13%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|+...  .+.|+|  .|+-+      . .          ..++.+..+   ....+..|.|.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D---~s~~t~yL~i~   84 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD---TSSSTAYMQFS   84 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec---CccceEEeccc
Confidence            35678899999999999886543  578877  23211      1 1          134444443   22234589999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.52  E-value=0.0002  Score=51.07  Aligned_cols=70  Identities=17%  Similarity=0.346  Sum_probs=42.1

Q ss_pred             CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .|+..+|.|.+.+ +|. ..|.|.++|..+...........+.++.+.....+ .+...+...|+|.+.+..-
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l-~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVML-EMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEE-ECCSCTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEe-ccCCCCCCEEEEEEEeCCC
Confidence            4667789999998 453 57999999988765432221222344444433333 2345566799999998643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.0002  Score=51.95  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEE--CCEEc---------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFH--EGKEL---------------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|+|.+.|...  ..+.|.+  .|+.+               .+.-+.+..+..+....+..|.|+++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            34456778999999999998643  3567776  12211               11111123344455555668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|++.|.|.-
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999964

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.52  E-value=0.00022  Score=52.60  Aligned_cols=74  Identities=22%  Similarity=0.441  Sum_probs=47.3

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc---C---CCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEE
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK---P---MPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEV  375 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~---p---~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i  375 (540)
                      ..|....+.+|++++|.|...+.   .   ..-+.|++.  |...            ....++..  ...+.  ...|.|
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~--~~s~~--~~~L~I   81 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTG--SGSGT--DFTLTI   81 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--EEETT--EEEEEE
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEE--eCCCC--eEeEEe
Confidence            34566778899999999986532   1   124899873  2110            01122222  22222  348999


Q ss_pred             cCCCCCCCeeEEEEEEcC
Q psy670          376 KDPRKEDTGLYKCNIKNF  393 (540)
Q Consensus       376 ~~~~~~d~G~Y~C~a~n~  393 (540)
                      .+++.+|+|.|.|.+.+.
T Consensus        82 ~~l~~~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          82 TSVQAEDLAVYYCKQSYN   99 (113)
T ss_dssp             SSCCGGGCEEEEEEECSS
T ss_pred             cccccCCCeEEEecccCC
Confidence            999999999999987543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.00022  Score=52.03  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=50.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|+|.+.|...  ..+.|++-  |+.      +.         ..-+-++.+..+....+..|.|+++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            44556889999999999998653  35788772  211      11         1111223334444555568999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      +.+|++.|.|....
T Consensus        88 ~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          88 RPEDTAVYYCARDP  101 (122)
T ss_dssp             CGGGCEEEEEEEET
T ss_pred             CCCcceEEEEeecC
Confidence            99999999997653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.52  E-value=0.00032  Score=50.87  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=50.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|+++.|+|.+.|....  .+.|.+-  |+.      +.         +.-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            4557789999999999986543  5778762  211      11         111223345555666667899999999


Q ss_pred             CCCeeEEEEEEcC
Q psy670          381 EDTGLYKCNIKNF  393 (540)
Q Consensus       381 ~d~G~Y~C~a~n~  393 (540)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999986543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.52  E-value=0.00027  Score=51.84  Aligned_cols=74  Identities=18%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             eCCceEEeeCCCeEEEEEEEEcc----CCCeEEEEEC--CEEc----c--------CCCceEEEEEecCCeeEEEEEEcC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAK----PMPEIVWFHE--GKEL----Q--------QTDRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~----p~~~i~W~~~--~~~~----~--------~~~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      ..|..+.+.+|++++|.|.+...    ....+.|++.  |...    .        ...++..  ...+.  ...|.|.+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~--~~~~~--~~~L~I~~   81 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSG--SGSGT--DFTLNIHP   81 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEETT--EEEEEESS
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEE--ecCCC--chhccccc
Confidence            34666778899999999987532    1224899872  2211    0        1123322  22222  34899999


Q ss_pred             CCCCCCeeEEEEEEcC
Q psy670          378 PRKEDTGLYKCNIKNF  393 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~n~  393 (540)
                      ++.+|++.|.|.+...
T Consensus        82 ~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          82 VEEEDAATYYCSHIRE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             ccccCCceEEEEECCC
Confidence            9999999999976543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00021  Score=51.85  Aligned_cols=69  Identities=16%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|+...  -+.|+|  .|+-+      . .          ..++.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~---s~~~~~L~i~~   85 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT---STTTAYMELSS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEccc---CccEeEeeecc
Confidence            4678899999999999886433  577887  23211      1 1          1244444331   22234799999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999974

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.52  E-value=0.00028  Score=51.19  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------c---------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------L---------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|...  ..+.|.+-  |+.      +         ...-..++.+..+....+..|.|+++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L   86 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSL   86 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccccc
Confidence            34456778999999999998653  35777761  221      1         11111123334444455668999999


Q ss_pred             CCCCCeeEEEEEE
Q psy670          379 RKEDTGLYKCNIK  391 (540)
Q Consensus       379 ~~~d~G~Y~C~a~  391 (540)
                      +.+|.+.|.|.-.
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.51  E-value=0.00021  Score=52.65  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=45.8

Q ss_pred             CCceEEeeCCCeEEEEEEEEccC-----CCeEEEEEC--CEEc----------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKP-----MPEIVWFHE--GKEL----------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p-----~~~i~W~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      .|..+.+.+|++++|.|...+..     ...+.|++.  |...          ......+......+  ....|.|.++.
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~--~~~~L~Is~~~   84 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG--TAFTLRISRVE   84 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS--SEEEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC--CEEEEEECCcc
Confidence            35567788999999999976531     336899872  2111          01111112222222  24589999999


Q ss_pred             CCCCeeEEEEE
Q psy670          380 KEDTGLYKCNI  390 (540)
Q Consensus       380 ~~d~G~Y~C~a  390 (540)
                      .+|++.|.|..
T Consensus        85 ~~DsAvYyCa~   95 (112)
T d1mjul1          85 AEDVGVYYCLQ   95 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccCCceEEEEe
Confidence            99999999954

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.51  E-value=0.00022  Score=52.44  Aligned_cols=70  Identities=23%  Similarity=0.441  Sum_probs=48.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.      +. .          ..|+.+..+   +...+..|.|.+
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D---~s~~t~yLq~~s   84 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQD---KAKNMAYLRMDS   84 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecc---cccceeeceecc
Confidence            4578899999999999886544  5889883  221      11 1          134444443   222345899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtAvYYCAr~   98 (124)
T d1zvya1          85 VKSEDTAIYTCGAT   98 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccCCcceEEEEeec
Confidence            99999999999764

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.51  E-value=0.00016  Score=53.61  Aligned_cols=71  Identities=24%  Similarity=0.452  Sum_probs=48.0

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe---e---c------C----------CCceEEEEeecCcceEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV---I---E------D----------TGRIKMSKKSIGKDTYLLR  164 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~---~---~------~----------~~~~~~~~~~~~~~~~~~~  164 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+.   +   .      .          ..|+.+..+.   ...+..
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~---s~~~~~   85 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN---AKNTVN   85 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG---GGTEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccC---CceEEE
Confidence            4567899999999999886443  5889873  221   1   0      0          1244444322   222447


Q ss_pred             EEEcCCCCCCCeEEEEEEEc
Q psy670          165 LEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       165 L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      |+|.+++.+|++.|.|....
T Consensus        86 L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          86 LQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EEECSCCGGGCEEEEEEEES
T ss_pred             EeeecccccceeEEEEEEEe
Confidence            99999999999999998653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.51  E-value=9e-05  Score=54.20  Aligned_cols=71  Identities=17%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------------CCCceEEEEEecCCeeEEEEEEcCCCCCCCe
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------------QTDRISWNVTLKGDKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  384 (540)
                      ..+.+.+|++++|.|.........+.|++.  |....            ...++.  ...++.  ...|.|.+++.+|++
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFS--GSNSGN--MATLTISRVEAGDEA   83 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEE--EEEETT--EEEEEESSCCGGGCE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEe--eecCCC--ccceEEeeeccCCCE
Confidence            346678999999999865444456899872  21110            111222  222222  348999999999999


Q ss_pred             eEEEEEEcC
Q psy670          385 LYKCNIKNF  393 (540)
Q Consensus       385 ~Y~C~a~n~  393 (540)
                      .|.|.+...
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999987653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.51  E-value=0.00026  Score=50.46  Aligned_cols=71  Identities=21%  Similarity=0.384  Sum_probs=48.2

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC-------------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED-------------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~-------------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+++|++++|+|.+.|....  -+.|+|.  |+.+      ..             ..++.+..+.   ...+..|.|
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~---s~~t~~L~i   85 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDD---SQSMLYLQM   85 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEET---TTTEEEEEE
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccc---ccceeEecc
Confidence            4678999999999999886543  5888872  3211      10             1244444431   222347999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy670          168 NNPTKDDGGNYRCNACN  184 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~  184 (540)
                      .+++.+|++.|.|....
T Consensus        86 ~sL~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRGR  102 (109)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cCCCHhHCEEEEEEEcC
Confidence            99999999999998543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.8e-05  Score=55.47  Aligned_cols=74  Identities=12%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             cccCCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEE-----eecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          113 IHQDGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSK-----KSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .+..|+.++|.|.+.++ |.. .|.|+++|+.+..........     ...+.....+.|.|..-....+..|+|.|.+.
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~   95 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE   95 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECT
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeC
Confidence            35578899999999875 544 899999999886543222111     11223344567888766656677999999886


Q ss_pred             C
Q psy670          186 I  186 (540)
Q Consensus       186 ~  186 (540)
                      .
T Consensus        96 s   96 (108)
T d1ow0a2          96 A   96 (108)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.51  E-value=0.00023  Score=51.96  Aligned_cols=72  Identities=21%  Similarity=0.406  Sum_probs=48.8

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|.  |+.      +. .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~---s~nt~~L~i~~   85 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDN---AKNTLYLQMSS   85 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecC---cccccccceee
Confidence            4578899999999999886544  5788872  221      11 1          1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEEcC
Q psy670          170 PTKDDGGNYRCNACNS  185 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~~  185 (540)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          86 LKSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             eccCcccceeEEecCC
Confidence            9999999999976543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.51  E-value=4.6e-05  Score=55.29  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      .++.++|.|.+.++ |. ..|.|.++|...............+|. ...+.|.|..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            47789999999984 53 479999999876542221111122222 234577877655555667999999865

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=4.1e-05  Score=55.41  Aligned_cols=71  Identities=14%  Similarity=0.303  Sum_probs=48.6

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      ..+.++|.|.+.|+ |.. .|.|+++|..+.............+.....+.|.|..-....+..|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            34679999999885 543 799999998875432222222333445566788887665556778999999864

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.50  E-value=0.0004  Score=51.27  Aligned_cols=71  Identities=21%  Similarity=0.426  Sum_probs=48.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-+      . .          .+|+.+..+.   ...+..|.|.+
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~---s~~t~yL~i~~   85 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDN---AKNTLYLQMNS   85 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECT---TTCCEEEEEES
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccC---CCceeEecEee
Confidence            4568899999999999886544  5888872  2211      1 1          1344444332   22234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          86 LKSEDTAVYYCAKYS  100 (135)
T ss_dssp             CCSSSCEEEEEEEBS
T ss_pred             eCcccceeeEEEEec
Confidence            999999999997654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00017  Score=51.63  Aligned_cols=69  Identities=12%  Similarity=0.156  Sum_probs=42.9

Q ss_pred             cccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy670          113 IHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNS  185 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  185 (540)
                      .|..|+.|+|.|.. ......+.++|+|..........   .........+.+.|.+++..|+|.|+|.....
T Consensus        14 ~v~~G~~VTL~C~~-~~~~~~f~L~k~g~~~~~~~~~~---~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          14 VVNSGGNVTLQCDS-QVAFDGFILCKEGEDEHPQCLNS---QPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEETTCCEEEEEEC-SSCCSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccCCCCcEEEEeCC-CCCCCEEEEEECCCcCCcEeeee---EEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            57899999999986 34556788888876532211100   00011223458999999999999999987643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.50  E-value=0.00015  Score=52.54  Aligned_cols=71  Identities=20%  Similarity=0.377  Sum_probs=48.1

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|+...  .+.|+|.  |+.      +. .          ..|+.+..+   ....+..|.|.
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D---~s~~t~~L~~~   84 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVD---KSSSTAYMELA   84 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecc---cCcceEeeccc
Confidence            35678899999999999887544  5788872  321      11 1          134444433   22233479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDTAvYYCAr~   99 (118)
T d2jelh1          85 RLTSEDSAIYYCARV   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCcceeeeEEEe
Confidence            999999999999643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.50  E-value=0.00016  Score=53.36  Aligned_cols=73  Identities=22%  Similarity=0.405  Sum_probs=47.9

Q ss_pred             CceEEeeCCCeEEEEEEEEcc---CCCeEEEEEC--CEEc---c---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAK---PMPEIVWFHE--GKEL---Q---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~---p~~~i~W~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      |..+.+.+|++++|.|...+.   ....+.|++.  |...   .         ...++.  ....+.  ...|.|.+++.
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~L~I~~l~~   82 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFS--GSKSGN--SASLTISGLQA   82 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE--EEEETT--EEEEEECSCCG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEE--EECCCC--EeeEEeCcCcc
Confidence            456778899999999997653   2345899972  1111   0         111222  222222  45899999999


Q ss_pred             CCCeeEEEEEEcCC
Q psy670          381 EDTGLYKCNIKNFH  394 (540)
Q Consensus       381 ~d~G~Y~C~a~n~~  394 (540)
                      +|+|.|.|.+.+..
T Consensus        83 ~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          83 EDEADYYCSSYDGS   96 (112)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             ccCEEEEEeeecCC
Confidence            99999999876543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.50  E-value=0.00022  Score=52.38  Aligned_cols=70  Identities=19%  Similarity=0.328  Sum_probs=46.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC----ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPMP----DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~----~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      +..+++|++++|+|.+.|+...    .+.|+|.  |+.+      ..          ..++.+..+.   ......|+|.
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~---s~~~~~L~i~   85 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDT---SNNQAFLNMM   85 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEG---GGTEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccc---cceeEEccee
Confidence            4568899999999999876432    3679872  3221      11          1234443321   1223479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        86 sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          86 TVETADTAIYYCAQS  100 (123)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ecccccceEEeeccc
Confidence            999999999999754

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.50  E-value=0.00021  Score=52.05  Aligned_cols=70  Identities=19%  Similarity=0.406  Sum_probs=48.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~---s~nt~yLqm~s   85 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADT---STDTGYLELSS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEeccc---CceEEEeeeec
Confidence            4578899999999999886544  5888872  2211      1 1          1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=4.8e-05  Score=55.19  Aligned_cols=71  Identities=13%  Similarity=0.215  Sum_probs=48.7

Q ss_pred             CCeEEEEEEEeec-CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          117 GDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       117 G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      .+.++|.|.+.++ |. ..|.|.++|..+.............+.....+.|.|.......+..|+|.|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            4679999999775 43 38999999987653322222233334445566788887666667789999988643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.49  E-value=0.00011  Score=53.83  Aligned_cols=69  Identities=19%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             CccccCCCeEEEEEEEeecCCCceEEEeC--CEe---ec---------CCCceEEEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          111 PTIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---IE---------DTGRIKMSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ...+.+|++++|.|.........+.|||.  |+.   +-         ...++....  .   .....|.|.+++.+|+|
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~---~~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--S---GTTATLTISGAQPEDEA   82 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--E---TTEEEEEETTCCGGGCS
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--C---CCEeeeeEcCccccCCc
Confidence            35678999999999874444446899982  321   10         012232221  1   12348999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+..
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99998764

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.49  E-value=0.0004  Score=50.42  Aligned_cols=71  Identities=21%  Similarity=0.411  Sum_probs=47.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEeec------C-------------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVIE------D-------------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|  .|+-++      .             ..|+.+..+.   ...+..|.|
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~---s~n~~~L~~   85 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD---SKRRVYLQM   85 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET---TTTEEEEEE
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccc---ccceeccce
Confidence            4568899999999999886543  588987  232211      0             1244444321   122347999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy670          168 NNPTKDDGGNYRCNACN  184 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~  184 (540)
                      .+++.+|++.|.|....
T Consensus        86 ~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          86 NTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CSCCGGGCEEEEEEEEB
T ss_pred             eeccCCCceEEEeeEec
Confidence            99999999999997543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.00039  Score=50.80  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=46.2

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC---eEEEEE---CCEEc-----------cCCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP---EIVWFH---EGKEL-----------QQTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~---~i~W~~---~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ...+.+|++++|.|...+....   -+.|++   +..+.           ....++..  ...+.  .+.|.|.+++.+|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~--s~~~~--~~~L~I~~~~~~D   84 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSG--SLIGN--KAALTITGAQTED   84 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEE--EEETT--EEEEEEESCCGGG
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeee--ccccc--ceeeecCCCCccc
Confidence            4668899999999998753322   388987   22210           01123332  22333  3589999999999


Q ss_pred             CeeEEEEEEcC
Q psy670          383 TGLYKCNIKNF  393 (540)
Q Consensus       383 ~G~Y~C~a~n~  393 (540)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (110)
T d1oaql_          85 EAIYFCALWYS   95 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             cEeEEEEcccC
Confidence            99999987653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.48  E-value=0.00014  Score=53.53  Aligned_cols=68  Identities=22%  Similarity=0.249  Sum_probs=43.8

Q ss_pred             ccccCCCeEEEEEEEeec----CCCceEEEeC--CEeec------------CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          112 TIHQDGDLLVMECVLEAS----PMPDIIWYQG--TKVIE------------DTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~----p~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ..+.+|++++|.|.....    ....+.|||.  |+...            ...++...     .......|.|.+++.+
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT-----GSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----CSSSEEEEEESSCCGG
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe-----cCCCEEEEEEcccccc
Confidence            457899999999987322    2224999983  32110            01122211     1222458999999999


Q ss_pred             CCeEEEEEEEc
Q psy670          174 DGGNYRCNACN  184 (540)
Q Consensus       174 d~G~Y~C~~~~  184 (540)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (111)
T d1j05a_          86 DVATYYCQQTN   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCccEEEeecC
Confidence            99999998754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.48  E-value=0.00032  Score=52.36  Aligned_cols=71  Identities=15%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             CccccCCCeEEEEEEEeecCCC----ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPMP----DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~----~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      +..+++|++++|+|.+.|....    -+.|+|.  |+.+      ..          ..|+.+..+.   ......|+|.
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~---s~~~~~L~i~   85 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDT---SKNQVVLVMT   85 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEET---TTTEEEEEEC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccc---cccEEEcccc
Confidence            4578899999999999876432    4789973  2211      00          1344444331   1123479999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy670          169 NPTKDDGGNYRCNACN  184 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~  184 (540)
                      +++.+|++.|.|....
T Consensus        86 ~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          86 RVSPVDTATYFCAHRR  101 (132)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             cCCcccceEEEEEEec
Confidence            9999999999998654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.48  E-value=0.00016  Score=53.23  Aligned_cols=72  Identities=21%  Similarity=0.393  Sum_probs=47.3

Q ss_pred             CceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEE---c---------cCCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKE---L---------QQTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      |..+.+.+|++++|.|...+..  ...+.|++-  +..   +         ....++..  ..++.  ...|.|.+++.+
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~--~~~~~--~~~L~I~~~~~~   82 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSG--SKSGT--SATLGITGLQTG   82 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEE--EEETT--EEEEEESSCCGG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceee--eCCCC--EeeeEEeeeccc
Confidence            3356788999999999876532  345899972  111   1         01122222  22333  348999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (111)
T d1rzfl1          83 DEADYYCGTWDS   94 (111)
T ss_dssp             GCSEEEEEEEET
T ss_pred             cCcceEEeecCC
Confidence            999999987643

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.48  E-value=0.00024  Score=52.53  Aligned_cols=78  Identities=22%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc----cCC------CceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL----QQT------DRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~----~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      ..|....+.+|++++|.|.... ....+.|++-  +..+    ...      ..... .........+.|.|.+++.+|+
T Consensus         6 Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           6 QSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKS-AFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEE-ECCSSSSSEEEEEECSCCGGGC
T ss_pred             ECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccce-EEeecCCceeEEEECCCCHhHC
Confidence            3466677889999999999764 3457899982  1111    000      01110 1111122345899999999999


Q ss_pred             eeEEEEEEcCCe
Q psy670          384 GLYKCNIKNFHG  395 (540)
Q Consensus       384 G~Y~C~a~n~~g  395 (540)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999999875443

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00032  Score=49.07  Aligned_cols=60  Identities=13%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             cCCCeEEEEEEEeeecCC--ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCC
Q psy670          467 SKKKTVVIECKVMSMYEP--SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGP  527 (540)
Q Consensus       467 ~~g~~~~l~C~v~g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~  527 (540)
                      ..++.++|.|.|.|+.+.  .|+|++||+.+..+.. ........+|+|.....+.....+++
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~~~~gt~~~~s~l~v~~~~~~   74 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDME-LVETRPAGDGTFQKWASVVVPLGKEQ   74 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCE-ECCCEECSSSCEEEEEEEEEESSTTT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEE-ECcEecCCCCcEEEEEEEEecCcCCC
Confidence            346789999999996554  7899999998876543 23345677888887766655555544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.48  E-value=5.2e-05  Score=55.01  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEEeec-CC-CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          116 DGDLLVMECVLEAS-PM-PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      .++.++|.|.+.|+ |. ..|.|.++|................+.....+.|.|..-....+..|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999885 54 3899999998754322222222233444556788887665556678999999865

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00011  Score=53.80  Aligned_cols=72  Identities=11%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEe--cCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTL--KGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~--~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++.++|.|.+.++ |. ..|.|.+||..+............  ++. ...+.|.|..-.......|+|.+.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            36789999999985 54 479999999877654322211111  222 23457888766655666899999987543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=0.00019  Score=52.14  Aligned_cols=70  Identities=14%  Similarity=0.301  Sum_probs=47.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ecC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IED-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-      +..           ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~---s~nt~~L~~~s   85 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQ---SSSTAYMQLNS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEccc---CcceEEeeeec
Confidence            4578899999999999887544  5889872  222      111           1344444432   22244799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1eapb1          86 LTSEDSAVYFCKRS   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccCCcceEEEEEEe
Confidence            99999999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.48  E-value=0.00021  Score=51.39  Aligned_cols=71  Identities=18%  Similarity=0.359  Sum_probs=47.9

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-C--------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-Q--------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.      +. .        .-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            345778999999999998653  35778772  211      11 1        11123344445555566899999999


Q ss_pred             CCCeeEEEEE
Q psy670          381 EDTGLYKCNI  390 (540)
Q Consensus       381 ~d~G~Y~C~a  390 (540)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.47  E-value=0.00022  Score=52.13  Aligned_cols=70  Identities=21%  Similarity=0.447  Sum_probs=47.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.      +. .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~---s~~~~~L~i~s   85 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDN---SKNTLYLQMNS   85 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccc---cceeEEeeeee
Confidence            4567899999999999876533  5788872  222      11 1          1344444431   12234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1ol0a_          86 LRAEDTAVYYCARE   99 (121)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccccceEEEEEEe
Confidence            99999999999754

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.47  E-value=0.00027  Score=51.71  Aligned_cols=71  Identities=18%  Similarity=0.362  Sum_probs=48.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~---s~~t~yL~m~s   85 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDN---PKNTLFLQMTS   85 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccC---CccEeEeeeee
Confidence            4568899999999999886544  5788872  2211      1 1          1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          86 LRSEDTAIYYCTRGG  100 (122)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             ecccCceEEEeecCC
Confidence            999999999997643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.47  E-value=0.00029  Score=51.76  Aligned_cols=73  Identities=25%  Similarity=0.439  Sum_probs=46.8

Q ss_pred             eCCceEEeeCCCeEEEEEEEEccC-----CCeEEEEEC--CEE---c-------c--CCCceEEEEEecCCeeEEEEEEc
Q psy670          316 EKPKIRSEQGGKLVVMECKVKAKP-----MPEIVWFHE--GKE---L-------Q--QTDRISWNVTLKGDKYHIRLEVK  376 (540)
Q Consensus       316 ~~~~~~~~~~g~~v~l~C~~~~~p-----~~~i~W~~~--~~~---~-------~--~~~~~~~~~~~~~~~~~~~L~i~  376 (540)
                      ..|....+.+|++++|.|.+.+..     ..-+.|++.  |..   +       .  ...++..  ...+.  ...|.|.
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~--~~~~~--~~~L~I~   81 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTG--SGSGT--DFTLKIS   81 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEETT--EEEEEES
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEe--eCCCC--EEEEEEC
Confidence            346667889999999999875432     234889872  111   0       0  1122222  22222  3489999


Q ss_pred             CCCCCCCeeEEEEEEc
Q psy670          377 DPRKEDTGLYKCNIKN  392 (540)
Q Consensus       377 ~~~~~d~G~Y~C~a~n  392 (540)
                      +++.+|++.|.|...+
T Consensus        82 ~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          82 RVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCcCEeEEEEcCC
Confidence            9999999999996543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=0.00037  Score=50.50  Aligned_cols=75  Identities=20%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-CC--------CceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-QT--------DRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~~--------~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|+|.+.|...  ..+.|++-  |+.      +. ..        -+-++.+..+....+..|.|+++
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL   85 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSL   85 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccccc
Confidence            34456778999999999998654  36788872  221      11 11        11223344444555668999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYYCAr~~   99 (117)
T d1um5h1          86 TSEDSAVYYCARSS   99 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCcceEEEEeecc
Confidence            99999999997543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=5.4e-05  Score=54.92  Aligned_cols=70  Identities=17%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             CCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          326 GKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       326 g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      .+.+.|.|.+.++ |. ..|.|.++|...............++. ...+.|.|..........|+|.|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            5678999999985 43 479999999976542221112222333 2344678877665566689999998643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=0.00022  Score=51.36  Aligned_cols=71  Identities=13%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|+...  .+.|+|  .|+-+      . .          ..++.+..+.   ...+..|.+.
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~---s~~tvyL~~~   84 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT---SSSTAYMQLS   84 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccc---ccceeEeccc
Confidence            35678899999999999886544  578887  22211      1 1          1344444432   2223479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          85 SLTSDDSAVYYCANK   99 (116)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEccc
Confidence            999999999999743

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3e-05  Score=54.92  Aligned_cols=62  Identities=13%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNAC  183 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  183 (540)
                      ..|..|+.|+|.|.. ......+.|+|+|.....     ....    ....+.+.|.+++.+|+|.|+|...
T Consensus        13 ~~V~~G~~VTL~C~~-~~~~~~f~L~Keg~~~~~-----~~~~----~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRL-DTATSMFLLLKEGRSSHV-----QRGY----GKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEEC-SSSCSEEEEEEESSSCEE-----EEEE----CSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECC-CCCCCEEEEEECCCccce-----eecC----CCceeEEEecccChhcCceEEEEeE
Confidence            357899999999987 345568999997753211     1111    1124589999999999999999743

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00029  Score=51.60  Aligned_cols=71  Identities=13%  Similarity=0.348  Sum_probs=47.4

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|++++|.|.+.|....  .+.|+|.  |+.+      . .          ..++.+..+.   ...+..|.|.
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~---s~~t~~L~i~   84 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT---SSNTAYLQLT   84 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEG---GGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeec---CCceeeeccc
Confidence            35678999999999999876433  5889872  3221      1 1          1233333321   1223479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999764

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.45  E-value=0.00018  Score=53.12  Aligned_cols=75  Identities=21%  Similarity=0.324  Sum_probs=50.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|...  ..+.|++-  |+.+      .         +.-+-++.+..+....+..|.|+++
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            34455778999999999998643  35788762  2211      1         1111133344555555668999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.45  E-value=0.00033  Score=51.56  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=47.9

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEcc-----CCCeEEEEEC--CEEc------------cCCCceEEEEEecCCeeEEEEEE
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAK-----PMPEIVWFHE--GKEL------------QQTDRISWNVTLKGDKYHIRLEV  375 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~-----p~~~i~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~L~i  375 (540)
                      ...|....+.+|++++|.|...+.     ....+.|++-  |...            ....++..  ...+  ....|.|
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~--~~~~--~~~~L~I   81 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG--SGSG--TDFTLKI   81 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EECS--SEEEEEE
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeee--eccC--CcccCcc
Confidence            344667778999999999997542     2246899872  2110            01122222  2222  2358999


Q ss_pred             cCCCCCCCeeEEEEEEc
Q psy670          376 KDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       376 ~~~~~~d~G~Y~C~a~n  392 (540)
                      .++..+|+|.|.|...+
T Consensus        82 ~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          82 SRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             SSCCGGGCEEEEEEECS
T ss_pred             CCCCcccCEEEEEEECC
Confidence            99999999999996544

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.00011  Score=54.60  Aligned_cols=71  Identities=25%  Similarity=0.408  Sum_probs=46.9

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CE---Ecc---------CCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GK---ELQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      |..+.+.+|++++|.|.....-...+.|++-  +.   .+.         ...++..  ...+  ....|.|.+++.+|+
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~--~~~~--~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSG--SGSG--TDYTLTISSLQPEDV   83 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE--EEEB--TEEEEEECSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecc--cCCC--CEEEEEcccCccCCC
Confidence            4456678999999999876544456899972  11   111         1122222  1222  234899999999999


Q ss_pred             eeEEEEEEc
Q psy670          384 GLYKCNIKN  392 (540)
Q Consensus       384 G~Y~C~a~n  392 (540)
                      |.|.|.+..
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.44  E-value=0.00032  Score=51.03  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=49.1

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|...  ..+.|++-  |+.      +.         +.-+-++.+..+....+..|.|++++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            3455778999999999998653  35788762  211      11         11112334445555556689999999


Q ss_pred             CCCCeeEEEEEE
Q psy670          380 KEDTGLYKCNIK  391 (540)
Q Consensus       380 ~~d~G~Y~C~a~  391 (540)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999754

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.9e-05  Score=54.81  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=44.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACN  184 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  184 (540)
                      ..|..|++|+|.|.. ..+...+.++|+|...........  .    ....+.+.|.+++..|+|.|+|....
T Consensus        13 ~~V~~G~~VTL~C~~-~~~~~~f~L~keg~~~~~~~~~~~--~----~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQG-GQETQEYRLYREKKTAPWITRIPQ--E----LVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEEC-CTTCCCEEEEESSSCCHHHHTSCH--H----HHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeC-CCCCCEEEEEECCCCcccEEEccC--C----CCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            357899999999996 355667889998754211000000  0    00112799999999999999998754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.44  E-value=0.00033  Score=51.23  Aligned_cols=73  Identities=18%  Similarity=0.329  Sum_probs=48.3

Q ss_pred             eEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------cCCC---------ceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------QQTD---------RISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------~~~~---------~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|..  ...+.|++-  |+.+      ....         +-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            34577899999999999764  335788872  2211      1111         112333444445566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999998643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00029  Score=50.03  Aligned_cols=69  Identities=17%  Similarity=0.363  Sum_probs=40.7

Q ss_pred             CCCeEEEEEEEEccCCC--eEEEEEC--CEEc---------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCee
Q psy670          325 GGKLVVMECKVKAKPMP--EIVWFHE--GKEL---------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGL  385 (540)
Q Consensus       325 ~g~~v~l~C~~~~~p~~--~i~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  385 (540)
                      +|++++|+|.+.|....  .+.|++-  |+.+               ...-+-++.+..+....+..|.|++++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48999999999986543  6788862  2221               111122334444555556689999999999999


Q ss_pred             EEEEEEcC
Q psy670          386 YKCNIKNF  393 (540)
Q Consensus       386 Y~C~a~n~  393 (540)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99975443

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.44  E-value=0.00017  Score=52.76  Aligned_cols=70  Identities=16%  Similarity=0.326  Sum_probs=47.8

Q ss_pred             CccccCCCeEEEEEEEeecCC--C--ceEEEeC--CEee------cCC----------CceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPM--P--DIIWYQG--TKVI------EDT----------GRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~--~--~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      +..+++|++++|+|.+.|+..  .  .+.|+|.  |+.+      ..+          .|+.+..+.   ...+..|.|.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~---s~n~~~L~~~   85 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDT---SLNKFFIQLI   85 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEET---TTTEEEEEES
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecccc---ccceeeccee
Confidence            457889999999999988653  2  4789883  3222      111          344444432   2223479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        86 sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          86 SVTNEDTAMYYCSRE  100 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeccceeEEEEEec
Confidence            999999999999754

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00013  Score=51.84  Aligned_cols=66  Identities=14%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             CCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEE--EEEEEeCCCCCCcEEEEEEEEcCC
Q psy670          222 GTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYE--IICEITDPIGPDSGTYRCNVKNEF  290 (540)
Q Consensus       222 g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~  290 (540)
                      +..++|.|.+.+ +|. ..|+|.++|..+...........+.++.+.  +.|.+..   .+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence            457999999999 443 369999999988765333222233344333  3444433   34457999999864

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.00021  Score=52.08  Aligned_cols=70  Identities=21%  Similarity=0.428  Sum_probs=47.2

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+   ....+..|.|.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD---~s~~t~yLq~~~   85 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRD---KGKNTVYLQMDS   85 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECT---TSTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeec---CCceEEEEEeee
Confidence            4568899999999999886544  5788873  2211      1 1          124444332   122234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d2p49b1          86 LKPEDTATYYCAAG   99 (121)
T ss_dssp             CCGGGCEEEEEEES
T ss_pred             ccccceeEEeeecc
Confidence            99999999999753

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.43  E-value=0.00024  Score=51.63  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC---eEEEEE--CCEEc------cC--------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP---EIVWFH--EGKEL------QQ--------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~---~i~W~~--~~~~~------~~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|....   .+.|.|  .|+.+      ..        .-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3457789999999999997653   467876  23221      11        11112334445555566899999999


Q ss_pred             CCCeeEEEEEE
Q psy670          381 EDTGLYKCNIK  391 (540)
Q Consensus       381 ~d~G~Y~C~a~  391 (540)
                      +|...|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1ncwh1          89 EDTATYYCAGL   99 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeEe
Confidence            99999999643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.00023  Score=52.28  Aligned_cols=73  Identities=23%  Similarity=0.418  Sum_probs=49.3

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------ccC-C--------CceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQQ-T--------DRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~~-~--------~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|.+-  |+.      +.. +        -+-++.+..+....+..|.|++++.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            345778999999999998654  36788872  221      111 1        1112334445555566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (124)
T d1zvya1          88 EDTAIYTCGATR   99 (124)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeecc
Confidence            999999997643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.43  E-value=0.00021  Score=52.70  Aligned_cols=69  Identities=26%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             eEEeeCCCeEEEEEEEEccC--CCeEEEEECC--EE---cc---------CCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKP--MPEIVWFHEG--KE---LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      .+.+.+|++++|.|.+.+..  ...+.|++-.  ..   +.         ...++..  ..++.  ...|.|.+++.+|+
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~L~I~~v~~~Ds   84 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSA--SKSGT--SASLAISGLESEDE   84 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEE--EEETT--EEEEEESSCCGGGC
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCccee--cCCCC--eeeeEecccCcccC
Confidence            46678899999999987643  4568999731  11   10         1112222  22222  34899999999999


Q ss_pred             eeEEEEEEc
Q psy670          384 GLYKCNIKN  392 (540)
Q Consensus       384 G~Y~C~a~n  392 (540)
                      +.|.|.+..
T Consensus        85 A~YyCA~~~   93 (114)
T d2rhea_          85 ADYYCAAWN   93 (114)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEeecC
Confidence            999998754

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00031  Score=49.91  Aligned_cols=67  Identities=12%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             CCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          116 DGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       116 ~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      +|++++|+|.+.|....  .+.|+|.  |+.+      . .          ..|+.+..+   ....+..|+|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D---~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVD---KPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEecc---ccccEEEeeeeeccccc
Confidence            58999999999886544  5889872  3322      1 1          134444332   22234579999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      ++.|.|.....
T Consensus        78 TAvYYCAr~~~   88 (103)
T d1oari_          78 SAVYYCARMWY   88 (103)
T ss_dssp             CSEEEEEEEEC
T ss_pred             cEEEEeEEECC
Confidence            99999986443

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.0016  Score=42.94  Aligned_cols=78  Identities=17%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             CceeecCCCCeEEEEEEecc-cCCCeEEEEe-CCE---EeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEc
Q psy670          214 PRIIPNESGTLIQMKCKCSA-KPRPEVKWFK-ADK---LVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKN  288 (540)
Q Consensus       214 ~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~-~~~---~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  288 (540)
                      .+...+..|+.+.|.|.+.- ...|+++|-| +|.   ++...........+........|.+..+-.+|.|.|+|.+..
T Consensus        10 ~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          10 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             cceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            34556778999999999965 5577899987 332   333333434444444444555788999999999999999986


Q ss_pred             CCC
Q psy670          289 EFG  291 (540)
Q Consensus       289 ~~~  291 (540)
                      ..+
T Consensus        90 ~s~   92 (104)
T d1xaua_          90 NSQ   92 (104)
T ss_dssp             TTE
T ss_pred             Chh
Confidence            544

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.43  E-value=0.00047  Score=49.92  Aligned_cols=72  Identities=18%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.+      ..          ..|+.+..+.   ......|.|.++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~---s~nt~~L~i~~l   85 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDI---VRNILTLQMSRL   85 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEET---TTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccc---cceeeeeccccc
Confidence            4568899999999999887544  5888873  2221      11          1244444332   222347999999


Q ss_pred             CCCCCeEEEEEEEcC
Q psy670          171 TKDDGGNYRCNACNS  185 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~~  185 (540)
                      +.+|++.|.|.....
T Consensus        86 ~~eDtA~YyCAr~~~  100 (118)
T d1lo4h1          86 RSEDTAIYYCARGTS  100 (118)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             cCCcceEEEecccCC
Confidence            999999999976443

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=6.1e-05  Score=54.71  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             ccCCCeEEEEEEEeec-CC---CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy670          114 HQDGDLLVMECVLEAS-PM---PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSI  186 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  186 (540)
                      +..+.+++|.|.+.++ |.   ..++|+++|..+.............+.....+.|.|..-....+-.|+|.|.+..
T Consensus        13 ~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          13 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             hccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            4467789999999874 43   3788999998775543222223333444455677776555455567999999865

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00023  Score=51.70  Aligned_cols=73  Identities=15%  Similarity=0.305  Sum_probs=48.1

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------ccC-CC--------ceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQQ-TD--------RISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~~-~~--------~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|...  ..+.|++-  |+.      +.. ..        +-++.+..+....+..|.|+++
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSL   86 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecc
Confidence            34455778999999999998653  35788862  221      111 11        1123333444445668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|.+.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (119)
T d1eapb1          87 TSEDSAVYFCKR   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cCCcceEEEEEE
Confidence            999999999964

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.42  E-value=0.00021  Score=52.61  Aligned_cols=74  Identities=20%  Similarity=0.382  Sum_probs=45.8

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc--------------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL--------------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .|....+.+|++++|.|.... ....+.|++-  |..+              ......++..... +...+.|.|.++..
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~L~i~~~~~   82 (111)
T d2esve1           5 FPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT-GGTYSTLKVQPAEL   82 (111)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEEEESSCCG
T ss_pred             CCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcC-CCCEEEEEECCccc
Confidence            355677889999999998543 2357899872  2110              0000111111111 12234899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998654

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.42  E-value=0.0002  Score=52.98  Aligned_cols=73  Identities=21%  Similarity=0.367  Sum_probs=46.7

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEE--CCEEcc---------------CCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFH--EGKELQ---------------QTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      .|....+.+|++++|.|.... ....+.|++  .|....               ...++.  .. ........|.|.++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFS--GR-QFSNSRSEMNVSTLE   80 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEE--EE-ECTTSCEEEEECSCC
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeeccccccccccccccee--ec-cCcCCeeEEEECCCC
Confidence            355677889999999998644 335789998  222110               001111  11 111223489999999


Q ss_pred             CCCCeeEEEEEEcC
Q psy670          380 KEDTGLYKCNIKNF  393 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~  393 (540)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          81 LGDSALYLCASSLA   94 (113)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             cccceeeeeeeeCC
Confidence            99999999988653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.42  E-value=0.00023  Score=52.37  Aligned_cols=67  Identities=18%  Similarity=0.269  Sum_probs=43.2

Q ss_pred             ccccCCCeEEEEEEEeec-----CCCceEEEeC--CEee----------cCC--CceEEEEeecCcceEEEEEEEcCCCC
Q psy670          112 TIHQDGDLLVMECVLEAS-----PMPDIIWYQG--TKVI----------EDT--GRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-----p~~~v~W~~~--~~~~----------~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+|++|+|.|...+.     ....+.||+.  |+..          ...  .++...     .......|.|.+++.
T Consensus        11 lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~-----~s~~~~~L~Is~~~~   85 (112)
T d1mjul1          11 VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGS-----GSGTAFTLRISRVEA   85 (112)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----ECSSEEEEEESSCCG
T ss_pred             EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEee-----cCCCEEEEEECCccc
Confidence            457899999999998542     2336899972  2211          011  122221     112235899999999


Q ss_pred             CCCeEEEEEEE
Q psy670          173 DDGGNYRCNAC  183 (540)
Q Consensus       173 ~d~G~Y~C~~~  183 (540)
                      +|++.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00032  Score=51.47  Aligned_cols=69  Identities=14%  Similarity=0.336  Sum_probs=47.8

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|  .|+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~---s~nt~yL~m~~   84 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADT---SSNIAYMQLSS   84 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecC---CccEEEeeecc
Confidence            5678899999999999887554  478887  22221      1 1          2444444432   22234899999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999974

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.42  E-value=0.00012  Score=53.54  Aligned_cols=71  Identities=25%  Similarity=0.408  Sum_probs=46.9

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---cc---------CCCceEEEEEecCCeeEEEEEEcCCCCCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRKEDT  383 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  383 (540)
                      |....+.+|++++|.|.........+.|++-  |..   +.         ...++..  ...+.  ...|.|.+++.+|+
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~--~~~~~--~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSG--STSGT--TATLTISGAQPEDE   81 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEE--EEETT--EEEEEETTCCGGGC
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeee--cCCCC--EeeeeEcCccccCC
Confidence            4566788999999999875444446889872  211   10         1122332  22222  34899999999999


Q ss_pred             eeEEEEEEc
Q psy670          384 GLYKCNIKN  392 (540)
Q Consensus       384 G~Y~C~a~n  392 (540)
                      |.|.|.+..
T Consensus        82 a~YyCA~~~   90 (108)
T d1nfde1          82 AAYYCLSSY   90 (108)
T ss_dssp             SEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.42  E-value=0.00021  Score=52.50  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             ccccCCCeEEEEEEEeec----CCCceEEEeC--CEee----c--------CCCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          112 TIHQDGDLLVMECVLEAS----PMPDIIWYQG--TKVI----E--------DTGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~----p~~~v~W~~~--~~~~----~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ..+.+|++|+|.|.....    ....+.||+.  |+..    .        ...++....     ......|.|.+++.+
T Consensus        11 ~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~-----~~~~~~L~I~~~~~~   85 (111)
T d2gsia1          11 LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG-----SGTDFTLNIHPVEEE   85 (111)
T ss_dssp             EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGG
T ss_pred             EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec-----CCCchhccccccccc
Confidence            567899999999987432    1234899983  2211    0        112332221     112358999999999


Q ss_pred             CCeEEEEEEEc
Q psy670          174 DGGNYRCNACN  184 (540)
Q Consensus       174 d~G~Y~C~~~~  184 (540)
                      |+|.|.|.+..
T Consensus        86 DsA~YyCa~~~   96 (111)
T d2gsia1          86 DAATYYCSHIR   96 (111)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEECC
Confidence            99999997654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00019  Score=52.52  Aligned_cols=71  Identities=24%  Similarity=0.413  Sum_probs=46.4

Q ss_pred             EEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------c---------CCCceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------Q---------QTDRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..+.+|++++|+|.+.|..  ...+.|++-  |+.+      .         +.-+-++.+..+....+..|.|++++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            3567899999999998754  335788872  2211      1         1111122333444445567999999999


Q ss_pred             CCeeEEEEEE
Q psy670          382 DTGLYKCNIK  391 (540)
Q Consensus       382 d~G~Y~C~a~  391 (540)
                      |++.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.4e-05  Score=56.78  Aligned_cols=34  Identities=12%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             EecCCCeEEEEEEEeeecC-C-ceEEEecCeecCCC
Q psy670          465 TISKKKTVVIECKVMSMYE-P-SVTWMKEKNTVKED  498 (540)
Q Consensus       465 ~~~~g~~~~l~C~v~g~p~-~-~v~W~~~~~~l~~~  498 (540)
                      .+..++.++|.|.+.|+-+ . .|+|++||..+..+
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~   51 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE   51 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCC
Confidence            4556889999999999643 3 89999999987654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00037  Score=51.37  Aligned_cols=70  Identities=14%  Similarity=0.295  Sum_probs=47.8

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|+...  .+.|+|  .|+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~---s~n~vyL~l~s   85 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADR---SSNTAFMYLNS   85 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEeccc---CcceEeeeeec
Confidence            5678899999999999876543  578887  23211      1 1          1344444332   12234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAR~   99 (125)
T d1rihh1          86 LTSEDSAVYYCARE   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeee
Confidence            99999999999854

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=0.00025  Score=52.35  Aligned_cols=74  Identities=16%  Similarity=0.425  Sum_probs=45.9

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEE---c---------cC--CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKE---L---------QQ--TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~---~---------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      .|....+.+|++++|.|.... ....+.|++-  +..   +         ..  ....++... ......+.|.|.+++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAE-RPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEE-CTTSSCEEEEESSCCG
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeE-CCcCCEEEEEECCCCc
Confidence            355667889999999998543 3457899872  110   0         00  000011111 1222235899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998754

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.41  E-value=0.00037  Score=51.03  Aligned_cols=70  Identities=16%  Similarity=0.350  Sum_probs=48.0

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|+|.+.|....  .+.|+|.  |+.+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~---s~~t~~Lqm~s   85 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD---LEDFVYLQMHK   85 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccC---ccceEeeeeec
Confidence            4578899999999999876433  5888872  2221      1 1          1344454432   22234899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (125)
T d1op3h1          86 MRVEDTAIYYCARK   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCccceeEeEeec
Confidence            99999999999864

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.41  E-value=0.00036  Score=51.18  Aligned_cols=70  Identities=24%  Similarity=0.400  Sum_probs=47.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEe------ec-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKV------IE-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~------~~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.      +. .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~---s~nt~~L~~~~   85 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDN---AKNSLYLQMNS   85 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccC---CCcEEEeeeee
Confidence            4578899999999999886543  5788872  221      11 1          1344444321   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtavYYCAr~   99 (126)
T d1dfbh1          86 LRAEDMALYYCVKG   99 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eccCcceEEEEEec
Confidence            99999999999754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.41  E-value=0.00016  Score=53.98  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             ccCCCeEEEEEEEeec-CC---CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          114 HQDGDLLVMECVLEAS-PM---PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       114 v~~G~~v~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ...++.++|.|.+.++ |.   ..++|+++|..+.............+.....+.|.|..-.......|+|.|.+..-
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            4568889999999885 42   36889999998765443333344444555566788776555566789999998653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00046  Score=51.35  Aligned_cols=73  Identities=16%  Similarity=0.311  Sum_probs=45.5

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCC---eEEEEEC--CEEcc-------C------CCceEEEEEecCCeeEEEEEEcCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMP---EIVWFHE--GKELQ-------Q------TDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~---~i~W~~~--~~~~~-------~------~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      |....+.+|+.++|.|........   .+.|++.  |+...       .      ..+.......++  ....|.|.+++
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~   83 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNE--SRVNLTIQGLR   83 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEET--TEEEEEECSCC
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCC--CEEEEEhhcCc
Confidence            445667889999999998643322   4789983  22110       0      011111111122  23489999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (117)
T d1dqta_          84 AVDTGLYLCKVEL   96 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCEeEEEEEec
Confidence            9999999998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.40  E-value=0.00014  Score=53.79  Aligned_cols=68  Identities=18%  Similarity=0.376  Sum_probs=43.7

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEe---e-c--C----------CCceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKV---I-E--D----------TGRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~---~-~--~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      .++.+|++++|.|... .....+.|||.  ++.   + .  .          ..++..  ..  .....+.|.|.+++.+
T Consensus         9 ~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           9 KVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFA--ER--PEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             EEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEE--EC--TTSSCEEEEESSCCGG
T ss_pred             EEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceee--EC--CcCCEEEEEECCCCcC
Confidence            4678999999999863 34457999982  211   1 0  0          011111  11  1112348999999999


Q ss_pred             CCeEEEEEEEc
Q psy670          174 DGGNYRCNACN  184 (540)
Q Consensus       174 d~G~Y~C~~~~  184 (540)
                      |+|.|.|.+..
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            99999998864

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.40  E-value=0.0007  Score=49.12  Aligned_cols=72  Identities=21%  Similarity=0.377  Sum_probs=48.4

Q ss_pred             EEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEcc-----------------CCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKELQ-----------------QTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ..+.+|++++|+|.+.|...  ..+.|++-  |+.+.                 ..-+-++.+..+....+..|.|++++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            45678999999999998643  46788872  32110                 11111233444555556689999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997544

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.39  E-value=0.00039  Score=51.32  Aligned_cols=72  Identities=17%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|....  .+.|+|.  |+-+      . .          ..|+.+..+.   ...+..|.|.
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~---s~~tv~L~~~   83 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQ---ATSTAYMELT   83 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEET---TTTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccC---CccEEEEEee
Confidence            35678899999999999876443  5888872  3211      1 1          1354454432   2224479999


Q ss_pred             CCCCCCCeEEEEEEEc
Q psy670          169 NPTKDDGGNYRCNACN  184 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~~  184 (540)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999998653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.39  E-value=0.00035  Score=51.69  Aligned_cols=75  Identities=17%  Similarity=0.399  Sum_probs=49.6

Q ss_pred             cCCceeecCCCCeEEEEEEecccCCCeEEEEeC--CEE---e---------eccCceEEEEecCCCeEEEEEEEeCCCCC
Q psy670          212 EKPRIIPNESGTLIQMKCKCSAKPRPEVKWFKA--DKL---V---------KESSKIKIIVNEQDDTYEIICEITDPIGP  277 (540)
Q Consensus       212 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  277 (540)
                      ..|..+.+.+|++++|.|...+. ...+.||+.  |..   +         ....+......  .......|.|.+++.+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG--DARKDSSLHITAAQPG   81 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEEC--TTSSEEEEEESSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccc--cccceeeeeecCCCcc
Confidence            44666778899999999998653 346899982  211   0         11122222222  2233468999999999


Q ss_pred             CcEEEEEEEEcC
Q psy670          278 DSGTYRCNVKNE  289 (540)
Q Consensus       278 d~g~y~C~~~~~  289 (540)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (115)
T d1ogad1          82 DTGLYLCAGAGS   93 (115)
T ss_dssp             GCEEEEEEEECT
T ss_pred             ceeeEcccccCC
Confidence            999999977643

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.39  E-value=0.00039  Score=50.46  Aligned_cols=71  Identities=15%  Similarity=0.341  Sum_probs=48.2

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|++++|+|.+.|....  .+.|+|.  |+-+      . .          ..|+.+..+.   ......|.|.
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~---s~nt~~L~m~   84 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDT---STNTAYMELS   84 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEET---TTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecC---cceEEecccc
Confidence            35678999999999999886544  5788772  2211      1 1          1344444332   1223489999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          85 SLRSEDTAFYFCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEEEc
Confidence            999999999999754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.39  E-value=0.00054  Score=50.40  Aligned_cols=74  Identities=19%  Similarity=0.350  Sum_probs=49.8

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE---------------ccCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE---------------LQQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|....  .+.|.+-  |+.               ..+.-+-++.+..+....+..|.|++++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            34557889999999999987544  4677651  111               1111122334445555556689999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.39  E-value=0.00051  Score=50.69  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.+      .         +.-+-++.+..+....+..|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            345778999999999998653  35788762  2211      1         111123344445555556899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999997543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=6.7e-05  Score=54.25  Aligned_cols=61  Identities=15%  Similarity=0.107  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEEeee-cCC-ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCeeE
Q psy670          468 KKKTVVIECKVMSM-YEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSIK  530 (540)
Q Consensus       468 ~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~~  530 (540)
                      ..+.++|.|.+.|+ |.. .|+|++||..+...  .........+|+|+....+.....++..+.
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~--~~~~~~~~~dgtys~~S~L~v~~~~w~~~~   79 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENY--KNTQPIMDTDGSYFVYSKLNVQKSNWEAGN   79 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSE--EECCCEECTTSCEEEEEEEEEEHHHHHTTC
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCc--EEeeeecCCCCcEEEEEEEEECHHHhCCCC
Confidence            35679999999996 433 89999999876532  111223345666665555544444433333

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.39  E-value=0.00098  Score=47.12  Aligned_cols=78  Identities=12%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|. ..+..|++|+|.|... .....+.++|+|.......   ...........+.+.|.+++..|+|.|.|.-
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~---~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLR---LIGEHHDGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEE---EECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCcee---eeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence            455555553 4577899999999864 3455788888764321110   0111223445568999999999999999987


Q ss_pred             EcC
Q psy670          391 KNF  393 (540)
Q Consensus       391 ~n~  393 (540)
                      ...
T Consensus        77 ~~~   79 (96)
T d1nkra1          77 SVT   79 (96)
T ss_dssp             EBT
T ss_pred             EcC
Confidence            654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00032  Score=49.43  Aligned_cols=71  Identities=17%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|. ..+..|++|+|.|... .+...+.|+|+|.....     .. ...  ...+.+.|.+++.+|+|.|+|..
T Consensus         4 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~-----~~-~~~--~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           4 TPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV-----QR-GYG--KVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEE-----EE-EEC--SSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccce-----ee-cCC--CceeEEEecccChhcCceEEEEe
Confidence            566666664 4577899999999863 34557899988753221     11 111  23458999999999999999974


Q ss_pred             E
Q psy670          391 K  391 (540)
Q Consensus       391 ~  391 (540)
                      .
T Consensus        74 ~   74 (93)
T d1olla2          74 S   74 (93)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.38  E-value=0.00029  Score=51.46  Aligned_cols=73  Identities=18%  Similarity=0.343  Sum_probs=48.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.      +.         +.-+-++.+..+....+..|.|++++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            345778999999999998653  35788762  211      11         111122334444444556899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (123)
T d1mqkh_          89 EDTAMYYCVRHE  100 (123)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcccceeEEecC
Confidence            999999997544

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.0003  Score=51.63  Aligned_cols=69  Identities=13%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|  .|+.+      . .          ..++.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~---s~nt~yL~~~~   85 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT---SANTAYMELRS   85 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEG---GGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEeccc---CceEEEEEEEc
Confidence            4678999999999999886544  578887  23221      1 1          1344454432   22234799999


Q ss_pred             CCCCCCeEEEEEE
Q psy670          170 PTKDDGGNYRCNA  182 (540)
Q Consensus       170 ~~~~d~G~Y~C~~  182 (540)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00039  Score=51.00  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c-CC--------CceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q-QT--------DRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~-~~--------~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|+|.+.|...  ..+.|.+-  |+.+      . ..        -+-++.+..+....+..|.|+++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            34456788999999999998653  35788772  2211      1 11        11233344454555668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|++.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999963

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.38  E-value=0.00029  Score=52.11  Aligned_cols=69  Identities=16%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEe--CCEeec-----C----------CCceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQ--GTKVIE-----D----------TGRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .++.+|++++|.|...+ ....+.|||  .|+...     .          ..++...  .  .......|.|.+++.+|
T Consensus         9 ~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           9 LIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGR--Q--FSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             EEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEE--E--CTTSCEEEEECSCCGGG
T ss_pred             EEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeec--c--CcCCeeEEEECCCCccc
Confidence            56789999999998633 345789998  232210     0          0111111  1  11123489999999999


Q ss_pred             CeEEEEEEEcC
Q psy670          175 GGNYRCNACNS  185 (540)
Q Consensus       175 ~G~Y~C~~~~~  185 (540)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (113)
T d2ntsp1          84 SALYLCASSLA   94 (113)
T ss_dssp             CEEEEEEEESS
T ss_pred             ceeeeeeeeCC
Confidence            99999988653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.38  E-value=0.00051  Score=51.20  Aligned_cols=72  Identities=17%  Similarity=0.312  Sum_probs=47.3

Q ss_pred             EEeeCCCeEEEEEEEEccCC----CeEEEEEC--CEEcc--------------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM----PEIVWFHE--GKELQ--------------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~----~~i~W~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..+.+|++++|+|.+.|...    .-+.|++-  |+.+.              +.-+-++.+..+....+..|.|++++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            45778999999999997642    25789862  21110              000112233344444566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999998654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00048  Score=50.57  Aligned_cols=70  Identities=19%  Similarity=0.381  Sum_probs=48.0

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|  .|+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~---s~~t~yL~~~s   85 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR---STSTAYLELNS   85 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccC---ccceEeeeecc
Confidence            4568899999999999886544  578887  23221      1 1          2344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTavYYCAR~   99 (127)
T d2fx7h1          86 LRPEDTAVYYCARE   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeec
Confidence            99999999999864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.37  E-value=0.00041  Score=51.06  Aligned_cols=71  Identities=18%  Similarity=0.378  Sum_probs=48.6

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-+      .           -..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~---s~~t~yL~~~s   85 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADK---STSTVYLELRN   85 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecC---CCceEEeeeee
Confidence            5678899999999999887554  4678762  2111      1           12455555432   12234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999998653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.37  E-value=0.00039  Score=50.32  Aligned_cols=71  Identities=15%  Similarity=0.326  Sum_probs=47.8

Q ss_pred             EEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c--------CCCceEEEEEecCCeeEEEEEEcCCCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q--------QTDRISWNVTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      ..+.+|+++.|+|.+.|...  -.+.|++-  |+.+      .        +.-+-++.+..+....+..|.|++++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            45678999999999998754  36788872  2211      1        11111223344555556689999999999


Q ss_pred             CeeEEEEEE
Q psy670          383 TGLYKCNIK  391 (540)
Q Consensus       383 ~G~Y~C~a~  391 (540)
                      .+.|.|.-.
T Consensus        90 tA~YyCAr~   98 (118)
T d1lo4h1          90 TAIYYCARG   98 (118)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeccc
Confidence            999999643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.37  E-value=0.00021  Score=52.53  Aligned_cols=68  Identities=13%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEee------cCC---------CceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI------EDT---------GRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .++.+|++++|.|...+ ....+.|||.  |+..      ...         .++....    .......|.|.+++.+|
T Consensus        11 ~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1          11 KVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR----PSQEQFSLILESATPSQ   85 (110)
T ss_dssp             EEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE----EETTEEEEEESSCCGGG
T ss_pred             EEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe----ccCCEEEEEECCCCHhh
Confidence            46789999999998743 3457999982  2211      000         1111111    11113489999999999


Q ss_pred             CeEEEEEEEc
Q psy670          175 GGNYRCNACN  184 (540)
Q Consensus       175 ~G~Y~C~~~~  184 (540)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998764

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00071  Score=48.17  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|.. .+..|++|+|.|... .....+.++|+|...........  ........+.+.|.+++..|+|.|+|.-
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~--~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQ--PHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC--------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeE--EcCCCceEEEEEeeecccCCCeEEEEee
Confidence            5666666643 478999999999853 33456788887765432111100  1112223447999999999999999987


Q ss_pred             EcCC
Q psy670          391 KNFH  394 (540)
Q Consensus       391 ~n~~  394 (540)
                      ....
T Consensus        80 ~~~~   83 (98)
T d1ugna2          80 YDSN   83 (98)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            6543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.37  E-value=0.00029  Score=51.72  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             EEeeCCCeEEEEEEEEccCCC----eEEEEEC--CEEcc------C--------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPMP----EIVWFHE--GKELQ------Q--------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~~----~i~W~~~--~~~~~------~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..+.+|++++|+|.+.|....    .+.|++-  |+.+.      .        .-+-++.+..+....+..|.|++++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            446789999999999885432    4678862  22111      1        11112333344444456899999999


Q ss_pred             CCCeeEEEEE
Q psy670          381 EDTGLYKCNI  390 (540)
Q Consensus       381 ~d~G~Y~C~a  390 (540)
                      +|+..|.|..
T Consensus        90 eDsAvYyCAr   99 (123)
T d1r0ah1          90 ADTAIYYCAQ   99 (123)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEeecc
Confidence            9999999974

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00011  Score=53.33  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             ccccCCCeEEEEEEEeec-CC---CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          112 TIHQDGDLLVMECVLEAS-PM---PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      ..+..++.++|.|.+.|+ |.   ..+.|++++................+.....+.|.|..-....+..|+|.+.+...
T Consensus        11 ~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l   90 (103)
T d1fp5a1          11 FDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL   90 (103)
T ss_dssp             HHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSC
T ss_pred             HHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            345667889999999885 43   25678888876654433333333334444556777765555557789999998653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.36  E-value=0.00033  Score=51.60  Aligned_cols=71  Identities=23%  Similarity=0.378  Sum_probs=47.1

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      -+..+++|+++.|+|.+.|....  .+.|+|.  |+.+      . .          ..++.+..+.   ...+..|+|.
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~---s~~~~~L~i~   83 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDN---AKNTLYLQMN   83 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC-----CEEEEEEC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecC---CceEEEEEEe
Confidence            35678999999999999876544  5788872  2221      1 1          1244444331   2233479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        84 ~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          84 SLKPEDTAMYYCAAD   98 (126)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccCcccCceeEEEee
Confidence            999999999999754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.00013  Score=52.97  Aligned_cols=71  Identities=20%  Similarity=0.407  Sum_probs=48.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------cCC----------CceEEEEeecCcceEEEEEEEcCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------EDT----------GRIKMSKKSIGKDTYLLRLEINNP  170 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~~~  170 (540)
                      +..+++|++++|+|.+.|....  .+.|+|  .|+.+      ...          .|+.+..+.   ...+..|.+.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~---s~~tv~L~~~~L   85 (116)
T d1fn4b1           9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDT---SKNQVFLKMNSL   85 (116)
T ss_dssp             CSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEG---GGTEEECCEESC
T ss_pred             CceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEcccc---ccchhhcceecc
Confidence            4578899999999999886544  588988  23322      111          233333322   222457999999


Q ss_pred             CCCCCeEEEEEEEc
Q psy670          171 TKDDGGNYRCNACN  184 (540)
Q Consensus       171 ~~~d~G~Y~C~~~~  184 (540)
                      +.+|++.|.|....
T Consensus        86 ~~eDTAvYyCAr~~   99 (116)
T d1fn4b1          86 QTDDTGTYYCTRDL   99 (116)
T ss_dssp             CCCCCEEEEEEEEC
T ss_pred             CCCCCEEEEEEeec
Confidence            99999999997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.36  E-value=0.00041  Score=51.07  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------cC-----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------ED-----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~~-----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|++++|.|.+.|....  .+.|+|.  |+.+      ..           ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~---s~~t~yL~~~~   85 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRND---SKNTLFLQMDS   85 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccC---CccEEEeeeee
Confidence            4567899999999999886433  5788872  2221      11           1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          86 LRPEDTGVYFCARDG  100 (127)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             eeecceeEEEEEEec
Confidence            999999999997643

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.36  E-value=0.00018  Score=52.65  Aligned_cols=71  Identities=15%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             EEeeCCCeEEEEEEEEccCC--C--eEEEEEC--CEEc------cCCC--------ceEEEEEecCCeeEEEEEEcCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM--P--EIVWFHE--GKEL------QQTD--------RISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~--~--~i~W~~~--~~~~------~~~~--------~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..+.+|++++|+|.+.|...  .  .+.|++-  |+.+      ..+.        +-++.+..+....+..|.|++++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            45678999999999998653  2  4688772  2211      1111        112233445555566899999999


Q ss_pred             CCCeeEEEEEE
Q psy670          381 EDTGLYKCNIK  391 (540)
Q Consensus       381 ~d~G~Y~C~a~  391 (540)
                      +|++.|.|...
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.36  E-value=0.00046  Score=51.06  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=46.4

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEc--c----CCCce-------EEEEEecCCeeEEEEEEcCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKEL--Q----QTDRI-------SWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~--~----~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      .|....+.+|++++|.|... .....+.|++-  |..+  .    .....       ...... .....+.|.|.++..+
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSR-EKKESFPLTVTSAQKN   82 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECC-SSTTBCCEEECSCCSC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEc-ccCCeEEEEECcCCcC
Confidence            35567788999999999975 34457899972  2110  0    00000       000011 1111237999999999


Q ss_pred             CCeeEEEEEEcC
Q psy670          382 DTGLYKCNIKNF  393 (540)
Q Consensus       382 d~G~Y~C~a~n~  393 (540)
                      |+|.|.|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999987654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.35  E-value=0.00038  Score=50.64  Aligned_cols=72  Identities=21%  Similarity=0.368  Sum_probs=48.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-CC--------CceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-QT--------DRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~~--------~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|.+-  |+.      +. ..        -+-++.+..+....+..|.|++++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            345778999999999998643  45788872  221      11 11        1113344455555566899999999


Q ss_pred             CCCeeEEEEEE
Q psy670          381 EDTGLYKCNIK  391 (540)
Q Consensus       381 ~d~G~Y~C~a~  391 (540)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999753

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00029  Score=51.59  Aligned_cols=74  Identities=16%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             CceEEeeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc------c-CCC--------ceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL------Q-QTD--------RISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~------~-~~~--------~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|.|.+.|..  ...+.|++-  |+.+      . ...        +-++.+..+....+..|.|+++
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L   86 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccccc
Confidence            3445678899999999998754  346788772  2211      0 110        1122333333444557999999


Q ss_pred             CCCCCeeEEEEEE
Q psy670          379 RKEDTGLYKCNIK  391 (540)
Q Consensus       379 ~~~d~G~Y~C~a~  391 (540)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d1j05b_          87 TSEDTAVYYCAPF   99 (121)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCcceEEEeEee
Confidence            9999999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00046  Score=50.61  Aligned_cols=73  Identities=15%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|....  .+.|.+-  |+.      +.         +.-+-++.+..+....+..|.|+++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L   85 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSL   85 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeeccc
Confidence            344567789999999999987544  5678761  211      11         1111223344455555668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|.+.|.|.-
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1lmka1          86 TSEDSAVYYCAR   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEee
Confidence            999999999964

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.33  E-value=0.00016  Score=51.40  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             CCCeEEEEEEEEcc-CCC-eEEEEECCEEccCCCceEEEEEecCCee-EEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          325 GGKLVVMECKVKAK-PMP-EIVWFHEGKELQQTDRISWNVTLKGDKY-HIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      .++.++|.|.+.|+ |.. .|.|++++..+............++... .+.|.+..   ++...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            45689999999985 544 7899999987754322111222223222 34566654   35567999998865

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00013  Score=52.66  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             eCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCeee
Q psy670          324 QGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGEL  397 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  397 (540)
                      ..++.++|.|.+.++ |. ..|.|.+++.........  ....+|. ...+.|+|..-... .|.|+|.+.+.....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~--~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVS--AVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSST   91 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC--CEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeee--eecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCe
Confidence            357899999999984 43 479998877543211110  1122322 23457888766663 578999999876543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.00042  Score=50.25  Aligned_cols=73  Identities=22%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEEc---------------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKEL---------------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|....  .+.|.+-  |+.+               .+.-+-++.+..+....+..|.|++++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34557889999999999986543  5777762  2111               111122233444555556689999999


Q ss_pred             CCCCeeEEEEEE
Q psy670          380 KEDTGLYKCNIK  391 (540)
Q Consensus       380 ~~d~G~Y~C~a~  391 (540)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999653

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00076  Score=44.01  Aligned_cols=58  Identities=17%  Similarity=0.421  Sum_probs=41.6

Q ss_pred             eCCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEEEc
Q psy670          324 QGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  392 (540)
                      ..|..+.|+|.....+.+  .-.|.|+|+.+.++...       ..  ...+.|..  .+++|.|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-------~~--~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------GQ--KTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-------CS--EEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-------CC--ceEEEEec--CCCCceEEEEEcC
Confidence            458889999999875443  46999999999875431       11  11566654  6789999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.32  E-value=0.00054  Score=50.74  Aligned_cols=70  Identities=20%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CccccCCCeEEEEEEEeecCCC----ceEEEeC--CEee------cC----------CCceEEEEeecCcceEEEEEEEc
Q psy670          111 PTIHQDGDLLVMECVLEASPMP----DIIWYQG--TKVI------ED----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~----~v~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      +..+++|++++|+|.+.|....    .+.|+|.  |+.+      ..          ..++.+..+.   ......|.|.
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~---s~~t~~L~i~   85 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDT---SSNQVFLKIT   85 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEET---TTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEeccc---CCcEEEccee
Confidence            3568899999999999876432    3579872  2211      11          1344444332   1123489999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        86 ~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          86 SVDTSDTATYHCARR  100 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccccceEEEEEe
Confidence            999999999999853

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.32  E-value=0.00053  Score=50.27  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=48.9

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc-CC--------CceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ-QT--------DRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~-~~--------~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.      +. .+        -+-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            345778999999999998653  35778762  211      11 11        1122344455555566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.32  E-value=0.00043  Score=50.52  Aligned_cols=71  Identities=21%  Similarity=0.461  Sum_probs=48.1

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c---C----------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E---D----------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~---~----------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|.  |+.+      .   .          ..|+.+..+.   ...+..|+|
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~---s~nt~~L~~   85 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN---SQSILYLQM   85 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET---TTTEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeec---ccceeccce
Confidence            4578899999999999886544  5889873  3211      0   0          1344444432   122347999


Q ss_pred             cCCCCCCCeEEEEEEEc
Q psy670          168 NNPTKDDGGNYRCNACN  184 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~~  184 (540)
                      .+++.+|++.|.|....
T Consensus        86 ~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          86 NTLRAEDSATYYCARDH  102 (122)
T ss_dssp             CSCCGGGCEEEEEEECC
T ss_pred             eeeccCcceEEEEEecC
Confidence            99999999999998643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00033  Score=52.19  Aligned_cols=70  Identities=13%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             ccccCCCeEEEEEEEeecCCC---ceEEEeC--CEee-------cCC------CceEEEEeecCcceEEEEEEEcCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMP---DIIWYQG--TKVI-------EDT------GRIKMSKKSIGKDTYLLRLEINNPTKD  173 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~---~v~W~~~--~~~~-------~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~  173 (540)
                      ..+.+|++++|.|........   .+.|||.  |+..       ...      .+......   .....+.|.|.+++.+
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGT---FNESRVNLTIQGLRAV   85 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEE---EETTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEe---CCCCEEEEEhhcCccc
Confidence            457789999999998543222   4789983  2211       000      11111111   1112358999999999


Q ss_pred             CCeEEEEEEEc
Q psy670          174 DGGNYRCNACN  184 (540)
Q Consensus       174 d~G~Y~C~~~~  184 (540)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=8.2e-05  Score=53.95  Aligned_cols=60  Identities=17%  Similarity=0.115  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEEeee-cCC-ceEEEecCeecCCCCeEEEEEEecCCeEEEEEEeeeeeeeeCCee
Q psy670          468 KKKTVVIECKVMSM-YEP-SVTWMKEKNTVKEDNKHVVHIEQVKDVSMNFELWLGIVEKRGPSI  529 (540)
Q Consensus       468 ~g~~~~l~C~v~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~g~y~c~~~~~~~~~~~~~~  529 (540)
                      .++.++|.|.+.|+ |.. +|+|++||......  .........+|+|+..-.+.....++..+
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~--~~~~~~~~~dgtys~~S~L~v~~~~w~~g   79 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY--KTTPPVLDSDGSFFLYSKLTVDKSRWQQG   79 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE--EECCCEECTTSCEEEEEEEEEEHHHHHTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCe--EEcceEECCCCCEEEEEEEEECHHHcCCC
Confidence            46789999999996 433 99999999875532  12222334466666544444444443333

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00039  Score=50.71  Aligned_cols=73  Identities=18%  Similarity=0.269  Sum_probs=48.8

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------cCC---------CceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------QQT---------DRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~~~---------~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|...  ..+.|.+-  |+.+      ...         -+-++.+..+....+..|.|+++
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL   86 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSL   86 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESC
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccccc
Confidence            34455778999999999998653  35788762  2211      111         11223344455555668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|.+.|.|..
T Consensus        87 ~~eDTAvYYCAR   98 (124)
T d1yedb1          87 KSEDSAVYFCTR   98 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEecc
Confidence            999999999974

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.32  E-value=0.00041  Score=50.76  Aligned_cols=70  Identities=20%  Similarity=0.343  Sum_probs=48.0

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+.+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~---s~~t~yL~~~~   85 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADR---STNTAHLQWSS   85 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEET---TTTEEEEEESS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecC---CCcEEEEeeec
Confidence            4578899999999999886544  4788872  2211      1 1          2455454432   22245899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          86 LKPSDTALYYCARL   99 (124)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEEEeec
Confidence            99999999999643

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.31  E-value=0.00015  Score=52.90  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             EeeCCCeEEEEEEEEccCCC--eEEEEECCEEccCCCceEEEEEecCC-eeEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          322 SEQGGKLVVMECKVKAKPMP--EIVWFHEGKELQQTDRISWNVTLKGD-KYHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       322 ~~~~g~~v~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      ....+..++|.|.+.++.+.  .|.|.++|..+............++. ...+.|++.....  ...|+|.+.+....
T Consensus        20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            35567889999999985433  68999999877654332222222332 2244677755433  23699999987544

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.31  E-value=0.00028  Score=52.08  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=43.7

Q ss_pred             ccccCCCeEEEEEEEeec---C---CCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          112 TIHQDGDLLVMECVLEAS---P---MPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~---p---~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      +.+.+|++++|.|...+.   .   ...+.|||.  |+..            ....++....     +.....|.|.+++
T Consensus        11 v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~-----s~~~~~L~I~~l~   85 (113)
T d1q9ra1          11 LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTITSVQ   85 (113)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCC
T ss_pred             EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC-----CCCeEeEEecccc
Confidence            567899999999987432   1   124899983  2211            0112222211     1223489999999


Q ss_pred             CCCCeEEEEEEEc
Q psy670          172 KDDGGNYRCNACN  184 (540)
Q Consensus       172 ~~d~G~Y~C~~~~  184 (540)
                      .+|+|.|.|....
T Consensus        86 ~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          86 AEDLAVYYCKQSY   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCeEEEecccC
Confidence            9999999998653

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00013  Score=53.27  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             cccCCCeEEEEEEEeec-CC---CceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          113 IHQDGDLLVMECVLEAS-PM---PDIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       113 ~v~~G~~v~l~C~~~~~-p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      .+..++.++|.|.+.++ |.   ..+.|.+++..+.............+.....+.|.|..-..+....|+|.|.+...
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            35678899999999875 43   36789999988765433323333334445566788876655566699999998654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00035  Score=51.53  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             CceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|++++|+|.+.|...  ..+.|.+-  |+.      +.         ..-+-++.+..+....+..|.|+++
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL   86 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSL   86 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeecc
Confidence            34456788999999999998653  35777761  221      11         1111123334455555668999999


Q ss_pred             CCCCCeeEEEEEE
Q psy670          379 RKEDTGLYKCNIK  391 (540)
Q Consensus       379 ~~~d~G~Y~C~a~  391 (540)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAR~   99 (125)
T d1rihh1          87 TSEDSAVYYCARE   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccceEEEEeee
Confidence            9999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.31  E-value=0.00019  Score=51.15  Aligned_cols=68  Identities=21%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             eeCCCeEEEEEEEEccC--CCeEEEEEC--CEEc--------------cCCCceEEEEEecCCeeEEEEEEcCCCCCCCe
Q psy670          323 EQGGKLVVMECKVKAKP--MPEIVWFHE--GKEL--------------QQTDRISWNVTLKGDKYHIRLEVKDPRKEDTG  384 (540)
Q Consensus       323 ~~~g~~v~l~C~~~~~p--~~~i~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  384 (540)
                      +.+|++++|+|.+.|..  ...+.|++.  |+.+              .+.-+-++.+..+....+..|.|++++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            56799999999998753  345788872  2211              11112234445555555668999999999999


Q ss_pred             eEEEEE
Q psy670          385 LYKCNI  390 (540)
Q Consensus       385 ~Y~C~a  390 (540)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.30  E-value=0.00039  Score=51.11  Aligned_cols=70  Identities=16%  Similarity=0.370  Sum_probs=47.4

Q ss_pred             CccccCCCeEEEEEEEeecCCC---ceEEEeC--CEee------cCC----------CceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP---DIIWYQG--TKVI------EDT----------GRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....   .+.|+|.  |+.+      ...          .|+.+..+.   ...+..|.|.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~---s~nt~yL~l~~   85 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDT---SKNQFFLKLNS   85 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccc---ccceeecceec
Confidence            3567899999999999887542   4789882  3322      111          233333321   22234899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          86 VTTEDTATYYCARS   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEEeeee
Confidence            99999999999753

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00052  Score=50.37  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=48.4

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|+++.|+|.+.|...  ..+.|.+-  |+.+      .         +.-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            345678999999999998643  35788761  2111      1         111123334445555566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|.-..
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.30  E-value=0.00035  Score=51.30  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=42.6

Q ss_pred             ccccCCCeEEEEEEEeecC-----CCceEEEeC--CEee----------cC--CCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          112 TIHQDGDLLVMECVLEASP-----MPDIIWYQG--TKVI----------ED--TGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p-----~~~v~W~~~--~~~~----------~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+|++|+|.|...+..     ...+.||+.  |+..          ..  ..++...  ..   .....|.|.+++.
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~--~~---~~~~~L~I~~~~~   85 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS--GS---GTDFTLKISRVEA   85 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EE---TTEEEEEESSCCG
T ss_pred             EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee--CC---CCEEEEEECcccc
Confidence            4678999999999874322     235889973  2211          01  1222211  11   1224899999999


Q ss_pred             CCCeEEEEEEE
Q psy670          173 DDGGNYRCNAC  183 (540)
Q Consensus       173 ~d~G~Y~C~~~  183 (540)
                      +|+|.|.|...
T Consensus        86 eDsAvYYC~~~   96 (112)
T d1ncwl1          86 EDLGVYYCWQG   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcCEeEEEEcC
Confidence            99999999653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.29  E-value=0.00042  Score=50.75  Aligned_cols=73  Identities=16%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      +....+.+|+++.|+|.+.|....  .+.|++-  |+.      +.         ..-+-++.+..+....+..|.|+++
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L   86 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSL   86 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecc
Confidence            344567889999999999986533  5678761  111      11         1111223334455555668999999


Q ss_pred             CCCCCeeEEEEE
Q psy670          379 RKEDTGLYKCNI  390 (540)
Q Consensus       379 ~~~d~G~Y~C~a  390 (540)
                      +.+|.+.|.|.-
T Consensus        87 ~~eDTA~YYCAR   98 (124)
T d2b1hh1          87 KPSDTALYYCAR   98 (124)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEEee
Confidence            999999999953

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.28  E-value=0.00053  Score=50.16  Aligned_cols=73  Identities=19%  Similarity=0.307  Sum_probs=48.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------cc---------CCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQ---------QTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|+++.|+|.+.|...  ..+.|++-  |+.      +.         ..-+-++.+..+....+..|.|++++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~   88 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS   88 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence            345678999999999998653  35788772  211      11         111112333444445556899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997544

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.28  E-value=0.00081  Score=49.76  Aligned_cols=71  Identities=15%  Similarity=0.336  Sum_probs=45.8

Q ss_pred             EEeeCCCeEEEEEEEEccCC----CeEEEEEC--CEEc--------------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM----PEIVWFHE--GKEL--------------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~----~~i~W~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ..+.+|++++|+|.+.|...    ..+.|++-  |+.+              .+.-+-++.+..+....+..|.|++++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            35678999999999997542    24578761  2111              0111112333444444456899999999


Q ss_pred             CCCeeEEEEEE
Q psy670          381 EDTGLYKCNIK  391 (540)
Q Consensus       381 ~d~G~Y~C~a~  391 (540)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999753

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.28  E-value=0.0004  Score=51.69  Aligned_cols=78  Identities=14%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             ccCCceeecCCCCeEEEEEEeccc--CCCeEEEEeC--CE---Eee---c--------cCceEEEEecCCCeEEEEEEEe
Q psy670          211 IEKPRIIPNESGTLIQMKCKCSAK--PRPEVKWFKA--DK---LVK---E--------SSKIKIIVNEQDDTYEIICEIT  272 (540)
Q Consensus       211 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~--~~---~l~---~--------~~~~~~~~~~~~~~~~~~l~i~  272 (540)
                      ...+..+...+|++++|.|.+.+.  ....+.|++.  |+   .|.   .        ..................|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            334456677789999999998653  3456899982  21   110   0        0011112222222333579999


Q ss_pred             CCCCCCcEEEEEEEEc
Q psy670          273 DPIGPDSGTYRCNVKN  288 (540)
Q Consensus       273 ~~~~~d~g~y~C~~~~  288 (540)
                      +++.+|++.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999996643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00018  Score=52.01  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             eCCCeEEEEEEEEcc-CC-CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCeeeE
Q psy670          324 QGGKLVVMECKVKAK-PM-PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGELN  398 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  398 (540)
                      ..++.++|.|.+.|+ |. ..|.|..++.......  ......+|.. ..+.|+|...... .+.|+|.|.+..+...
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~--~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT--FPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE--CCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe--cccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            357789999999985 43 3799976664321111  1111223332 2357888777663 5789999999765443

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.28  E-value=0.00044  Score=51.12  Aligned_cols=71  Identities=13%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEee------cCCCceE-------EEEeecCcceEEEEEEEcCCCCCCCe
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVI------EDTGRIK-------MSKKSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~------~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ..+.+|++++|.|... .....+.|||.  ++.+      .......       .......  .....|.|.++..+|+|
T Consensus         9 ~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DSa   85 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK--KESFPLTVTSAQKNPTA   85 (114)
T ss_dssp             EEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS--TTBCCEEECSCCSCCCE
T ss_pred             EEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEccc--CCeEEEEECcCCcCCce
Confidence            5688999999999974 34557999982  2111      0000000       0000111  11237999999999999


Q ss_pred             EEEEEEEcC
Q psy670          177 NYRCNACNS  185 (540)
Q Consensus       177 ~Y~C~~~~~  185 (540)
                      .|.|.+...
T Consensus        86 ~YyCa~~~~   94 (114)
T d1ogae1          86 FYLCASSSR   94 (114)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEeeccC
Confidence            999987643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.28  E-value=2.2e-05  Score=57.33  Aligned_cols=72  Identities=11%  Similarity=0.154  Sum_probs=47.8

Q ss_pred             CCCeEEEEEEEeec-CCC-ceEEEeCCEeecCCCceEEEEeecCcceEEEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy670          116 DGDLLVMECVLEAS-PMP-DIIWYQGTKVIEDTGRIKMSKKSIGKDTYLLRLEINNPTKDDGGNYRCNACNSIG  187 (540)
Q Consensus       116 ~G~~v~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  187 (540)
                      .++.+.|.|.+.|+ |.. .|.|.++|..+.............+.....+.|.|......+...|+|.|.+...
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            35679999999884 543 8999999998865433222222223334455677766555667789999998754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.28  E-value=0.00069  Score=50.10  Aligned_cols=71  Identities=17%  Similarity=0.378  Sum_probs=48.4

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee-------c----------CCCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI-------E----------DTGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~-------~----------~~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|....  .+.|+|  .|+-+       .          -..|+.+..+.   ...+..|.+.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~---s~~t~~L~~~~   84 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADE---STRTVYLHLRG   84 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET---TTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEecc---CcceeEEeecc
Confidence            5678899999999999876544  478877  22211       0          12444554432   22234799999


Q ss_pred             CCCCCCeEEEEEEEc
Q psy670          170 PTKDDGGNYRCNACN  184 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~~  184 (540)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          85 LRSDDTAVYYCASNS   99 (133)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEEeeecc
Confidence            999999999997643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.27  E-value=0.00091  Score=48.90  Aligned_cols=73  Identities=21%  Similarity=0.364  Sum_probs=49.5

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc---------------cCCCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL---------------QQTDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.+               .+.-+-++.+..+....+..|.|++++.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            345778999999999998543  35788762  2111               1111223444555555667899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999997543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.27  E-value=0.00029  Score=52.48  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             eCCCeEEEEEEEEcc-CC---CeEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCe
Q psy670          324 QGGKLVVMECKVKAK-PM---PEIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHG  395 (540)
Q Consensus       324 ~~g~~v~l~C~~~~~-p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g  395 (540)
                      ..++.++|.|.+.++ |.   ..+.|+++|..+............++.. ..+.|.|..-.......|+|.|.+..-
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            457889999999985 42   4789999999886544333222333332 244677665544556679999998753

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.27  E-value=0.00043  Score=50.46  Aligned_cols=70  Identities=13%  Similarity=0.329  Sum_probs=47.7

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEcC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEINN  169 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~~  169 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|.  |+-+      . .          ..|+.+..+.   ...+..|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~---s~~t~~L~~~s   85 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADK---SSSTAYMQLSS   85 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEET---TTTEEEEEEES
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccC---CcceEEecccc
Confidence            4568899999999999886544  5788872  2211      1 1          1344444432   22234799999


Q ss_pred             CCCCCCeEEEEEEE
Q psy670          170 PTKDDGGNYRCNAC  183 (540)
Q Consensus       170 ~~~~d~G~Y~C~~~  183 (540)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            99999999999753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.27  E-value=0.00064  Score=48.53  Aligned_cols=77  Identities=13%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|. ..+..|++|+|.|... .+...+.|+|+|.......   ......+..  ..+.|..+...|+|.|+|..
T Consensus         6 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~---~~~~~~~~~--~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           6 KPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRL---PAGPKVNGT--FQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEE---ECEEEETTE--EEEEEEEEECCSCEEEEEEE
T ss_pred             CCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEE---EccccCCcc--EEEEEeccccccCEEEEEEe
Confidence            566666664 3578899999999864 3456789999885432211   111122222  24566667778999999986


Q ss_pred             EcCC
Q psy670          391 KNFH  394 (540)
Q Consensus       391 ~n~~  394 (540)
                      ....
T Consensus        79 ~~~~   82 (99)
T d1nkra2          79 SFHD   82 (99)
T ss_dssp             EETT
T ss_pred             ecCC
Confidence            6543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00017  Score=52.27  Aligned_cols=74  Identities=14%  Similarity=0.126  Sum_probs=46.3

Q ss_pred             EEeeCCCeEEEEEEEEcc-CC---CeEEEEECCEEccCCCceEEEEEecCCee--EEEEEEcCCCCCCCeeEEEEEEcCC
Q psy670          321 RSEQGGKLVVMECKVKAK-PM---PEIVWFHEGKELQQTDRISWNVTLKGDKY--HIRLEVKDPRKEDTGLYKCNIKNFH  394 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~-p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~  394 (540)
                      ..+..+..++|.|.+.|. |.   ..+.|.+++............. ..++.+  .+.|.|..-.......|+|+|.+..
T Consensus        11 ~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~-~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          11 FDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEK-QRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEE-ETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEE-CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            335567888999999985 43   3678888887665543322222 233322  3466665544445678999999865


Q ss_pred             e
Q psy670          395 G  395 (540)
Q Consensus       395 g  395 (540)
                      .
T Consensus        90 l   90 (103)
T d1fp5a1          90 L   90 (103)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.25  E-value=0.00051  Score=50.17  Aligned_cols=73  Identities=23%  Similarity=0.402  Sum_probs=48.3

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------cC---------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------QQ---------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.+      ..         .-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~   88 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence            345678999999999998643  35788762  2211      11         11112334445555566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1ol0a_          89 EDTAVYYCAREP  100 (121)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccceEEEEEEec
Confidence            999999997543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.25  E-value=0.00086  Score=49.31  Aligned_cols=73  Identities=23%  Similarity=0.427  Sum_probs=47.0

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------c-C--------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------Q-Q--------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~-~--------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|+++.|+|.+.|...  ..+.|.+-  |+.+      . .        .-+-++.+..+....+..|.|++++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            345778999999999988543  35788872  2211      1 1        11112344445555566899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.25  E-value=0.00065  Score=50.24  Aligned_cols=70  Identities=23%  Similarity=0.435  Sum_probs=47.9

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c---C----------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E---D----------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~---~----------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+++|++++|+|.+.|....  .+.|+|.  |+.+      .   .          ..|+.+..+.   ...+..|.|
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~---s~nt~~Lq~   85 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDD---SKNTLYLQM   85 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEG---GGTEEEEEE
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEeccc---ccceeecce
Confidence            4578999999999999876543  5788872  3221      0   0          1344444432   223347999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy670          168 NNPTKDDGGNYRCNAC  183 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~  183 (540)
                      .+++.+|++.|.|...
T Consensus        86 ~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          86 NSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccccCCceEEEEecc
Confidence            9999999999999854

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00044  Score=51.53  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             CceEEeeCCCeEEEEEEEEccCCC---eEEEEECC--EEc--c-----CC------CceEEEEEecCCeeEEEEEEcCCC
Q psy670          318 PKIRSEQGGKLVVMECKVKAKPMP---EIVWFHEG--KEL--Q-----QT------DRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       318 ~~~~~~~~g~~v~l~C~~~~~p~~---~i~W~~~~--~~~--~-----~~------~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      |....+.+|+.++|.|.......+   .+.|++..  +..  .     ..      .+...  ........+.|.|.+++
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~l~   83 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSIC--TGTSSGNQVNLTIQGLR   83 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSC--CCCBCSSEEEEEECSCC
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEE--eEcCCCCEEEEEeeccc
Confidence            445667789999999998643322   58899832  111  0     00      00000  01112234589999999


Q ss_pred             CCCCeeEEEEEEc
Q psy670          380 KEDTGLYKCNIKN  392 (540)
Q Consensus       380 ~~d~G~Y~C~a~n  392 (540)
                      .+|+|.|.|.+..
T Consensus        84 ~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          84 AMDTGLYICKVEL   96 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeEec
Confidence            9999999998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.25  E-value=0.00045  Score=50.84  Aligned_cols=67  Identities=19%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             ccccCCCeEEEEEEEeec-----CCCceEEEeC--CEee------------cCCCceEEEEeecCcceEEEEEEEcCCCC
Q psy670          112 TIHQDGDLLVMECVLEAS-----PMPDIIWYQG--TKVI------------EDTGRIKMSKKSIGKDTYLLRLEINNPTK  172 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~-----p~~~v~W~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  172 (540)
                      ..+.+|++|+|.|...+.     ....+.||+.  |+..            ....++....     ......|.|.+++.
T Consensus        12 ~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~   86 (113)
T d1n4xl_          12 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEA   86 (113)
T ss_dssp             EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----CSSEEEEEESSCCG
T ss_pred             EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec-----cCCcccCccCCCCc
Confidence            467899999999998432     2246899982  2211            0112222211     12235899999999


Q ss_pred             CCCeEEEEEEE
Q psy670          173 DDGGNYRCNAC  183 (540)
Q Consensus       173 ~d~G~Y~C~~~  183 (540)
                      +|+|.|.|...
T Consensus        87 ~DsavYyCa~~   97 (113)
T d1n4xl_          87 EDLGIYYCFQG   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccCEEEEEEEC
Confidence            99999999654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.25  E-value=0.0014  Score=48.13  Aligned_cols=75  Identities=17%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------C---------CCceEEEEEecCCeeEEEEEEcC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------Q---------TDRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------~---------~~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      ...|....+.+|++++|.|... .....+.|++-  |..+.      .         ...... ....+  ....|.|.+
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~L~i~~   79 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSV-SREKK--ERFSLILES   79 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEE-ECSST--TBCEEEESS
T ss_pred             EccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceE-EeccC--cEeeeEecc
Confidence            4456667788999999999864 33457899972  21110      0         011111 11111  123799999


Q ss_pred             CCCCCCeeEEEEEEcC
Q psy670          378 PRKEDTGLYKCNIKNF  393 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~n~  393 (540)
                      +..+|+|.|.|.+...
T Consensus        80 ~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          80 ASTNQTSMYLCASSST   95 (113)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             CccCCcccEEeeEccC
Confidence            9999999999998653

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00027  Score=52.72  Aligned_cols=73  Identities=11%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             ccccCCCeEEEEEEEeecCCC---ceEEEeC--CEe---e----cCCCceEEEE---eecCcceEEEEEEEcCCCCCCCe
Q psy670          112 TIHQDGDLLVMECVLEASPMP---DIIWYQG--TKV---I----EDTGRIKMSK---KSIGKDTYLLRLEINNPTKDDGG  176 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~---~v~W~~~--~~~---~----~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G  176 (540)
                      ..+.+|++++|.|........   .+.|||.  ++.   +    ..........   .........+.|.|.+++.+|+|
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            457799999999998433222   4889983  221   1    0000000000   00112233468999999999999


Q ss_pred             EEEEEEEc
Q psy670          177 NYRCNACN  184 (540)
Q Consensus       177 ~Y~C~~~~  184 (540)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99998764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00025  Score=51.03  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             CCCeEEEEEEecc-cCC-CeEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCCC
Q psy670          221 SGTLIQMKCKCSA-KPR-PEVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFGE  292 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  292 (540)
                      .++.++|.|.+.+ +|. ..|.|.+++........... ..++.....+.|.|..-.. ..+.|+|.+.+....
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV-LQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE-EETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee-cCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            5789999999998 554 47999887754321111111 1223334456777766554 457899999986543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.22  E-value=0.00082  Score=49.69  Aligned_cols=75  Identities=17%  Similarity=0.396  Sum_probs=49.4

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEE------c---------cCCCceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKE------L---------QQTDRISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~------~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|+++.|+|.+.|....  .+.|.+-  |+.      +         ...-+-++.+..+....+..|.|++++
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~   86 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLR   86 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCC
Confidence            34557889999999999986543  5677761  211      1         111112233445555556689999999


Q ss_pred             CCCCeeEEEEEEcC
Q psy670          380 KEDTGLYKCNIKNF  393 (540)
Q Consensus       380 ~~d~G~Y~C~a~n~  393 (540)
                      .+|++.|.|.....
T Consensus        87 ~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          87 SDDTAVYYCASNSI  100 (133)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeeeccC
Confidence            99999999965443

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.22  E-value=0.00069  Score=49.40  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=49.4

Q ss_pred             eEEeeCCCeEEEEEEEEccCCC--eEEEEEC--CEEc-----------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPMP--EIVWFHE--GKEL-----------------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~~--~i~W~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      ...+.+|++++|+|.+.|....  .+.|++-  |+.+                 .+.-+-++.+..+....+..|.|+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            3457789999999999986533  5788862  2211                 11111233444555555668999999


Q ss_pred             CCCCCeeEEEEEEc
Q psy670          379 RKEDTGLYKCNIKN  392 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n  392 (540)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCar~~  102 (122)
T d1q9rb1          89 RAEDSATYYCARDH  102 (122)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccCcceEEEEEecC
Confidence            99999999998643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=7.5e-05  Score=54.35  Aligned_cols=70  Identities=7%  Similarity=-0.007  Sum_probs=48.0

Q ss_pred             ccceeeeCcceeEEeecceeeeeecCeecccCCceEEEEecCccceeeEEEEEEcccccCCCeeEEEEEEccCcc
Q psy670            7 LKSYTLEGEPTKQIEANFQMNMYHKGSLLKMSDRLSSTLVQDQSRLYYLAVLTIKNVQKSDSGEYKVIAKNKNGE   81 (540)
Q Consensus         7 ~~~c~~~g~p~~~~~~~~~~~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   81 (540)
                      -+.|.+.|.-+    ....|.|++||.++............++ +....+.|.|..-+-++...|+|++.+....
T Consensus        24 ~l~C~~~gf~P----~~i~v~W~~~g~~~~~~~~~~~~~~~~~-tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          24 TLVCLVNDFYP----GSATVTWKANGATINDGVKTTKPSKQGQ-NYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             CCCEEEEEEBS----SCCEEEEEETTEEECSSCBCCCCBCSSS-CEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EEEEEEEEeeC----CCCEEEEEECCEECCCCEEeccccCCCc-eEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            36799998543    3479999999998865433222222233 4456688888777777778899999987543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.21  E-value=0.00054  Score=50.70  Aligned_cols=74  Identities=26%  Similarity=0.470  Sum_probs=48.5

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE---c-----------------cCCCceEEEEEecCCeeEEEEE
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE---L-----------------QQTDRISWNVTLKGDKYHIRLE  374 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~---~-----------------~~~~~~~~~~~~~~~~~~~~L~  374 (540)
                      ....+.+|++++|+|.+.|...  ..+.|++-  |+.   +                 .+.-+-++.+..+....+..|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            3445778999999999998643  46788862  111   0                 0111112233344444566899


Q ss_pred             EcCCCCCCCeeEEEEEEc
Q psy670          375 VKDPRKEDTGLYKCNIKN  392 (540)
Q Consensus       375 i~~~~~~d~G~Y~C~a~n  392 (540)
                      |++++.+|++.|.|....
T Consensus        88 i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             ECSCCGGGCEEEEEEEES
T ss_pred             eecccccceeEEEEEEEe
Confidence            999999999999998643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=52.30  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CCeEEeCCceEEeeCCCeEEEEEEEEccCCCeEEEEECCEEccCCCceEEEEEecCCeeEEEEEEcCCCCCCCeeEEEEE
Q psy670          311 PPTFIEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHEGKELQQTDRISWNVTLKGDKYHIRLEVKDPRKEDTGLYKCNI  390 (540)
Q Consensus       311 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  390 (540)
                      +|.+...|. ..+..|++|+|.|... .+...+.++++|..........   ...+  ..+.+.|.+++.+|+|.|+|..
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~---~~~~--~~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP---QELV--KKGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC---HHHH--TTTEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc---CCCC--CEEEEEEEecCHHHCCeEEEEE
Confidence            566666665 4477999999999863 3455788888875432100000   0000  1127999999999999999987


Q ss_pred             EcC
Q psy670          391 KNF  393 (540)
Q Consensus       391 ~n~  393 (540)
                      ...
T Consensus        77 ~~~   79 (96)
T d1ugna1          77 GSD   79 (96)
T ss_dssp             EET
T ss_pred             eCC
Confidence            643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.19  E-value=0.0004  Score=50.43  Aligned_cols=70  Identities=21%  Similarity=0.409  Sum_probs=47.3

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceEEEe--CCEee------c---C----------CCceEEEEeecCcceEEEEEEE
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DIIWYQ--GTKVI------E---D----------TGRIKMSKKSIGKDTYLLRLEI  167 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~W~~--~~~~~------~---~----------~~~~~~~~~~~~~~~~~~~L~i  167 (540)
                      +..+++|+++.|+|.+.|+...  .+.|+|  .|+.+      .   .          ..|+.+..+   +...+..|.+
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD---~s~nt~yL~~   85 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRD---DSRNSIYLQM   85 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEEC---TTTSEEEEEE
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccc---cccceeecee
Confidence            5678999999999999887544  468888  23221      1   1          123333322   1222447999


Q ss_pred             cCCCCCCCeEEEEEEE
Q psy670          168 NNPTKDDGGNYRCNAC  183 (540)
Q Consensus       168 ~~~~~~d~G~Y~C~~~  183 (540)
                      .+++.+|++.|.|...
T Consensus        86 ~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ESCCGGGCEECEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            9999999999999754

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.18  E-value=0.00082  Score=49.46  Aligned_cols=73  Identities=21%  Similarity=0.383  Sum_probs=48.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEE------ccC---------CCceEEEEEecCCeeEEEEEEcCCCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKE------LQQ---------TDRISWNVTLKGDKYHIRLEVKDPRK  380 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~  380 (540)
                      ...+.+|++++|.|.+.|...  ..+.|++-  |+.      +..         .-+-++.+..+....+..|.|++++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~   88 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP   88 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence            345678999999999998643  35778762  111      111         11123344455555667899999999


Q ss_pred             CCCeeEEEEEEc
Q psy670          381 EDTGLYKCNIKN  392 (540)
Q Consensus       381 ~d~G~Y~C~a~n  392 (540)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (127)
T d2fb4h1          89 EDTGVYFCARDG  100 (127)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cceeEEEEEEec
Confidence            999999997544

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.001  Score=49.42  Aligned_cols=71  Identities=10%  Similarity=0.091  Sum_probs=42.2

Q ss_pred             CccccCCCeEEEEEEEeecCCC--ceE-EEeC-CEe---e------------cCCCceEEEEeecCcceEEEEEEEcCCC
Q psy670          111 PTIHQDGDLLVMECVLEASPMP--DII-WYQG-TKV---I------------EDTGRIKMSKKSIGKDTYLLRLEINNPT  171 (540)
Q Consensus       111 ~~~v~~G~~v~l~C~~~~~p~~--~v~-W~~~-~~~---~------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~  171 (540)
                      +..+.+|++++|.|...+....  ... |++. +..   +            ....++......   .....+|.|.+++
T Consensus         9 p~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~   85 (118)
T d1yjdc1           9 PMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKL---GNESVTFYLQNLY   85 (118)
T ss_dssp             SEEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEE---CSSEEEEEEESCC
T ss_pred             CcEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEEC---CCCeEEEEECCCC
Confidence            4556789999999998544332  233 4442 111   1            011222222221   1123479999999


Q ss_pred             CCCCeEEEEEEEc
Q psy670          172 KDDGGNYRCNACN  184 (540)
Q Consensus       172 ~~d~G~Y~C~~~~  184 (540)
                      .+|+|.|.|.+..
T Consensus        86 ~~DsavYyCa~~~   98 (118)
T d1yjdc1          86 VNQTDIYFCKIEV   98 (118)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCeEEEEEEec
Confidence            9999999998753

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.15  E-value=0.00048  Score=50.67  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=46.9

Q ss_pred             EEeeCCCeEEEEEEEEccCC---CeEEEEEC--CEEc------cCC--------CceEEEEEecCCeeEEEEEEcCCCCC
Q psy670          321 RSEQGGKLVVMECKVKAKPM---PEIVWFHE--GKEL------QQT--------DRISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       321 ~~~~~g~~v~l~C~~~~~p~---~~i~W~~~--~~~~------~~~--------~~~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      ..+.+|+++.|+|.+.|...   ..+.|++-  |+.+      ...        -+-++.+..+....+..|.|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            34678999999999998754   35789872  3221      111        11122233344455668999999999


Q ss_pred             CCeeEEEEE
Q psy670          382 DTGLYKCNI  390 (540)
Q Consensus       382 d~G~Y~C~a  390 (540)
                      |.+.|.|..
T Consensus        90 DtAvYyCAr   98 (127)
T d3cx5j1          90 DTATYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeee
Confidence            999999974

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.0005  Score=50.74  Aligned_cols=71  Identities=14%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CCccccCCCeEEEEEEEeecCCC--ceEEEeC--CEee------c-C----------CCceEEEEeecCcceEEEEEEEc
Q psy670          110 KPTIHQDGDLLVMECVLEASPMP--DIIWYQG--TKVI------E-D----------TGRIKMSKKSIGKDTYLLRLEIN  168 (540)
Q Consensus       110 ~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~--~~~~------~-~----------~~~~~~~~~~~~~~~~~~~L~i~  168 (540)
                      .+..+++|+++.|+|.+.|+...  .+.|+|.  |+-+      . .          ..|+.+..+.   ...+..|.|.
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~---s~~t~yL~~~   84 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADE---STSTAYMELS   84 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEET---TTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEeccc---ccceEEeeee
Confidence            35678899999999999876433  5888872  3211      1 1          1344444332   1223479999


Q ss_pred             CCCCCCCeEEEEEEE
Q psy670          169 NPTKDDGGNYRCNAC  183 (540)
Q Consensus       169 ~~~~~d~G~Y~C~~~  183 (540)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999854

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.15  E-value=0.00037  Score=50.64  Aligned_cols=73  Identities=21%  Similarity=0.367  Sum_probs=48.6

Q ss_pred             ceEEeeCCCeEEEEEEEEccCCC--eEEEEE--CCEEc------c---CC--------CceEEEEEecCCeeEEEEEEcC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPMP--EIVWFH--EGKEL------Q---QT--------DRISWNVTLKGDKYHIRLEVKD  377 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~~--~i~W~~--~~~~~------~---~~--------~~~~~~~~~~~~~~~~~L~i~~  377 (540)
                      ....+.+|+++.|+|.+.|....  .+.|.+  .|+.+      .   ..        -+-++.+..+....+..|.|++
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            44567899999999999986543  568887  22211      1   11        0112233444455566899999


Q ss_pred             CCCCCCeeEEEEEE
Q psy670          378 PRKEDTGLYKCNIK  391 (540)
Q Consensus       378 ~~~~d~G~Y~C~a~  391 (540)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          88 LRVDDTAIYYCTRA  101 (121)
T ss_dssp             CCGGGCEECEEEEE
T ss_pred             cCCCcceEEEEecc
Confidence            99999999999653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.14  E-value=0.00035  Score=51.59  Aligned_cols=73  Identities=21%  Similarity=0.367  Sum_probs=48.6

Q ss_pred             ceEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc------cCC-C--------ceEEEEEecCCeeEEEEEEcCCC
Q psy670          319 KIRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL------QQT-D--------RISWNVTLKGDKYHIRLEVKDPR  379 (540)
Q Consensus       319 ~~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~------~~~-~--------~~~~~~~~~~~~~~~~L~i~~~~  379 (540)
                      ....+.+|++++|+|.+.|...  ..+.|.+-  |+.+      ... .        +-++.+..+....+..|.|++++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            3455778999999999987643  36788762  2211      111 1        11233444555556689999999


Q ss_pred             CCCCeeEEEEEE
Q psy670          380 KEDTGLYKCNIK  391 (540)
Q Consensus       380 ~~d~G~Y~C~a~  391 (540)
                      .+|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999753

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.14  E-value=0.00067  Score=50.16  Aligned_cols=72  Identities=18%  Similarity=0.361  Sum_probs=48.7

Q ss_pred             eEEeeCCCeEEEEEEEEccCC--CeEEEEEC--CEEc-----------------cCCCceEEEEEecCCeeEEEEEEcCC
Q psy670          320 IRSEQGGKLVVMECKVKAKPM--PEIVWFHE--GKEL-----------------QQTDRISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       320 ~~~~~~g~~v~l~C~~~~~p~--~~i~W~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      ...+.+|++++|+|.+.|...  ..+.|++-  |+.+                 .+.-+-++.+..+....+..|.|+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            345778999999999998653  35778762  2211                 11112233444555556678999999


Q ss_pred             CCCCCeeEEEEEE
Q psy670          379 RKEDTGLYKCNIK  391 (540)
Q Consensus       379 ~~~d~G~Y~C~a~  391 (540)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.13  E-value=0.00021  Score=52.81  Aligned_cols=76  Identities=21%  Similarity=0.379  Sum_probs=46.7

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc------CCCc-------eEEEEEecCCeeEEEEEEcCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ------QTDR-------ISWNVTLKGDKYHIRLEVKDPRKE  381 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~------~~~~-------~~~~~~~~~~~~~~~L~i~~~~~~  381 (540)
                      .|....+.+|++++|.|.... ....+.|++-  |..+.      ....       ....... .......|.|.++..+
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR-IRTEHFPLTLESARPS   81 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC-SSSSBCCEEBSSCCTT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec-CCCCceEeeecccccc
Confidence            355667889999999998653 3457899982  11110      0000       0000110 1112237999999999


Q ss_pred             CCeeEEEEEEcCC
Q psy670          382 DTGLYKCNIKNFH  394 (540)
Q Consensus       382 d~G~Y~C~a~n~~  394 (540)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          82 HTSQYLCASSENI   94 (112)
T ss_dssp             TCSEEEEEEECSS
T ss_pred             ccccEEEEEecCC
Confidence            9999999887543

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.07  E-value=0.00075  Score=49.74  Aligned_cols=68  Identities=16%  Similarity=0.405  Sum_probs=43.3

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec------CC---------CceEEEEeecCcceEEEEEEEcCCCCCC
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE------DT---------GRIKMSKKSIGKDTYLLRLEINNPTKDD  174 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~~~~~d  174 (540)
                      .++.+|++++|.|... .....+.|||.  |+.+.      ..         .+....  ...  .....|.|.+++.+|
T Consensus        10 ~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~L~i~~~~~~D   84 (113)
T d1j8he1          10 LVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVS--REK--KERFSLILESASTNQ   84 (113)
T ss_dssp             EEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEE--CSS--TTBCEEEESSCCGGG
T ss_pred             EEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEE--ecc--CcEeeeEeccCccCC
Confidence            4677999999999863 33457899982  22110      00         111111  111  112379999999999


Q ss_pred             CeEEEEEEEc
Q psy670          175 GGNYRCNACN  184 (540)
Q Consensus       175 ~G~Y~C~~~~  184 (540)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998864

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.07  E-value=0.00035  Score=51.48  Aligned_cols=75  Identities=16%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             CCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc-----CCCceEEE-------EEecCCeeEEEEEEcCCCCCC
Q psy670          317 KPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ-----QTDRISWN-------VTLKGDKYHIRLEVKDPRKED  382 (540)
Q Consensus       317 ~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~-----~~~~~~~~-------~~~~~~~~~~~L~i~~~~~~d  382 (540)
                      .|....+.+|++++|.|.... ....+.|++-  |+.+.     ........       ...........|.|.++..+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            355567889999999998753 3457999972  21110     00000000       000011112379999999999


Q ss_pred             CeeEEEEEEc
Q psy670          383 TGLYKCNIKN  392 (540)
Q Consensus       383 ~G~Y~C~a~n  392 (540)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999998764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.07  E-value=0.0017  Score=47.64  Aligned_cols=76  Identities=21%  Similarity=0.375  Sum_probs=46.5

Q ss_pred             EeCCceEEeeCCCeEEEEEEEEccCCCeEEEEEC--CEEcc-------CCCc-------eEEEEEecCCeeEEEEEEcCC
Q psy670          315 IEKPKIRSEQGGKLVVMECKVKAKPMPEIVWFHE--GKELQ-------QTDR-------ISWNVTLKGDKYHIRLEVKDP  378 (540)
Q Consensus       315 ~~~~~~~~~~~g~~v~l~C~~~~~p~~~i~W~~~--~~~~~-------~~~~-------~~~~~~~~~~~~~~~L~i~~~  378 (540)
                      ...|....+.+|++++|.|.........+.|++-  |+.+.       ....       .++.......   ..|.|...
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~---~~l~l~~~   81 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD---TELRLQVA   81 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEET---TEEEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccc---cEEEEecC
Confidence            3345666788999999999987655567999983  22110       0000       1111111111   15777778


Q ss_pred             CCCCCeeEEEEEEcC
Q psy670          379 RKEDTGLYKCNIKNF  393 (540)
Q Consensus       379 ~~~d~G~Y~C~a~n~  393 (540)
                      ..+|++.|.|.+...
T Consensus        82 ~~~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          82 NMSQGRTLYCTCSAD   96 (112)
T ss_dssp             SCCSCEEEEEEEESS
T ss_pred             CccCCccEEEEEecC
Confidence            889999999987543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.07  E-value=0.00067  Score=49.90  Aligned_cols=72  Identities=13%  Similarity=0.240  Sum_probs=43.4

Q ss_pred             ccccCCCeEEEEEEEeecCCCceEEEeC--CEeec-----CCCceEEEEe------ecCcceEEEEEEEcCCCCCCCeEE
Q psy670          112 TIHQDGDLLVMECVLEASPMPDIIWYQG--TKVIE-----DTGRIKMSKK------SIGKDTYLLRLEINNPTKDDGGNY  178 (540)
Q Consensus       112 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~--~~~~~-----~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d~G~Y  178 (540)
                      .++.+|++++|.|... .....+.|||.  |+.+.     ..........      ..........|.|.++..+|+|.|
T Consensus         9 ~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavY   87 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQD-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVY   87 (112)
T ss_dssp             EEEETTCCEEEEEEES-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEE-CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEE
Confidence            4678999999999874 33457999982  22110     0000000000      000111123799999999999999


Q ss_pred             EEEEEc
Q psy670          179 RCNACN  184 (540)
Q Consensus       179 ~C~~~~  184 (540)
                      .|.+..
T Consensus        88 yCA~~~   93 (112)
T d2bnub1          88 FCASSY   93 (112)
T ss_dssp             EEEEEC
T ss_pred             EEeecC
Confidence            998764

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00075  Score=48.58  Aligned_cols=71  Identities=15%  Similarity=0.231  Sum_probs=45.6

Q ss_pred             CCCeEEEEEEecc-cCCC--eEEEEeCCEEeeccCceEEEEecCCCeEEEEEEEeCCCCCCcEEEEEEEEcCCC
Q psy670          221 SGTLIQMKCKCSA-KPRP--EVKWFKADKLVKESSKIKIIVNEQDDTYEIICEITDPIGPDSGTYRCNVKNEFG  291 (540)
Q Consensus       221 ~g~~~~l~C~~~~-~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  291 (540)
                      .++.+.|.|.+.+ +|..  .+.|.+++..+...........++.....+.|.|..........|+|.+.+...
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            4678999999999 4553  578888876554322211222223344456777777665566689999998644

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00041  Score=49.99  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             CCCeEEEEEEEEcc-CCC--eEEEEECCEEccCCCceEEEEEecCCe-eEEEEEEcCCCCCCCeeEEEEEEcCCee
Q psy670          325 GGKLVVMECKVKAK-PMP--EIVWFHEGKELQQTDRISWNVTLKGDK-YHIRLEVKDPRKEDTGLYKCNIKNFHGE  396 (540)
Q Consensus       325 ~g~~v~l~C~~~~~-p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  396 (540)
                      .++.+.|.|.+.++ |..  .+.|.+++..+..... ......++.. ..+.|+|..........|+|+|.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~-~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF-PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC-CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe-eeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999995 543  4677777655432111 1111222222 3457888877766667899999886543