Psyllid ID: psy6720

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Secondary Structure (PSIPRED)
ccccccccEEEccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHcccccccccEEEEEcccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHccccccccEEEcc
Coil and Loop (DISEMBL)
wkipnlspLCVLLTslgggtflGLCCLLTGCNSFEEAIELAtsgdntkvdkLVRDIYGGSYERFLGMFsfghmnskekresvsreDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIfdhwtshpafidsykpgvdfilng
Flexible Loop (DISEMBL)
WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIElatsgdntkvdkLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Low Complexity Region (SEG)
WKIPNLSPLCVlltslgggtflglcclltgcNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Disordered region (IsUnstruct)
*****LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGH**************LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFIL**
Disordered Region (DISOPRED)
*****LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFG**************DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWT*******************
Disordered Region (DISEMBL)
WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMN***********DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Disordered Region (DISPRO)
WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPAFIDSYKPGVDFILNG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q8K4K6	548	Pantothenate kinase 1 OS=	yes	N/A	0.758	0.251	0.765	2e-58
Q9BZ23	570	Pantothenate kinase 2, mi	no	N/A	0.758	0.242	0.765	2e-58
Q8TE04	598	Pantothenate kinase 1 OS=	no	N/A	0.774	0.235	0.756	3e-58
Q08DA5	370	Pantothenate kinase 3 OS=	no	N/A	0.758	0.372	0.779	1e-57
Q9H999	370	Pantothenate kinase 3 OS=	no	N/A	0.758	0.372	0.772	2e-57
Q8R2W9	370	Pantothenate kinase 3 OS=	no	N/A	0.758	0.372	0.758	6e-57
Q5R5F8	773	Pantothenate kinase 4 OS=	no	N/A	0.791	0.186	0.398	1e-24
Q4R4U1	773	Pantothenate kinase 4 OS=	N/A	N/A	0.791	0.186	0.398	3e-24
Q9NVE7	773	Pantothenate kinase 4 OS=	no	N/A	0.791	0.186	0.398	3e-24
Q8L5Y9	901	Pantothenate kinase 2 OS=	no	N/A	0.835	0.168	0.372	2e-22

>sp|Q8K4K6|PANK1_MOUSE Pantothenate kinase 1 OS=Mus musculus GN=Pank1 PE=1 SV=1

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 127/145 (87%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLCCLLTGC +FEEA+++A  GD+T VDKLV+DIYGG YERF G+      
Sbjct: 386 TSLGGGTFLGLCCLLTGCETFEEALDMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVA 444

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M SKEKRES+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +
Sbjct: 445 SSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMV 504

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYAMD+WSKG  KALFLEHE
Sbjct: 505 SMKLLAYAMDFWSKGQLKALFLEHE 529

Plays a role in the physiological regulation of the intracellular CoA concentration.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q9BZ23|PANK2_HUMAN Pantothenate kinase 2, mitochondrial OS=Homo sapiens GN=PANK2 PE=1 SV=3

 Score =  224 bits (571), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 127/145 (87%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTF GLCCLLTGC +FEEA+E+A+ GD+TKVDKLVRDIYGG YERF G+      
Sbjct: 411 TSLGGGTFFGLCCLLTGCTTFEEALEMASRGDSTKVDKLVRDIYGGDYERF-GLPGWAVA 469

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M SKEKRE+VS+EDLARATL+TITNNIGSIARM A+NENIN+VVFVGNFLR+N I
Sbjct: 470 SSFGNMMSKEKREAVSKEDLARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTI 529

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           +M+LLAYA+DYWSKG  KALF EHE
Sbjct: 530 AMRLLAYALDYWSKGQLKALFSEHE 554

May be the master regulator of the CoA biosynthesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8TE04|PANK1_HUMAN Pantothenate kinase 1 OS=Homo sapiens GN=PANK1 PE=1 SV=2

 Score =  224 bits (570), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/148 (75%), Positives = 128/148 (86%), Gaps = 7/148 (4%)

Query: 11  VLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM--- 67
           V  TSLGGGTFLGLCCLLTGC +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+   
Sbjct: 433 VTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGS 491

Query: 68  ---FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRV 124
               SFG+M SKEKR+S+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+
Sbjct: 492 AVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRI 551

Query: 125 NPISMKLLAYAMDYWSKGTQKALFLEHE 152
           N +SMKLLAYAMD+WSKG  KALFLEHE
Sbjct: 552 NMVSMKLLAYAMDFWSKGQLKALFLEHE 579

Plays a role in the physiological regulation of the intracellular CoA concentration.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q08DA5|PANK3_BOVIN Pantothenate kinase 3 OS=Bos taurus GN=PANK3 PE=2 SV=1

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 125/145 (86%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLC LLTGC SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+      
Sbjct: 211 TSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVA 269

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M  KEKRESVS+EDLARATLVTITNNIGSIARM A+NE IN+VVFVGNFLRVN +
Sbjct: 270 SSFGNMIYKEKRESVSKEDLARATLVTITNNIGSIARMCAVNEKINRVVFVGNFLRVNTL 329

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYA+DYWSKG  KALFLEHE
Sbjct: 330 SMKLLAYALDYWSKGQLKALFLEHE 354

Plays a role in the physiological regulation of the intracellular CoA concentration.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q9H999|PANK3_HUMAN Pantothenate kinase 3 OS=Homo sapiens GN=PANK3 PE=1 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/145 (77%), Positives = 125/145 (86%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLC LLTGC SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+      
Sbjct: 211 TSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVA 269

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M  KEKRESVS+EDLARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +
Sbjct: 270 SSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTL 329

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYA+DYWSKG  KALFLEHE
Sbjct: 330 SMKLLAYALDYWSKGQLKALFLEHE 354

Plays a role in the physiological regulation of the intracellular CoA concentration.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8R2W9|PANK3_MOUSE Pantothenate kinase 3 OS=Mus musculus GN=Pank3 PE=2 SV=1

 Score =  219 bits (559), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 125/145 (86%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLC LLTGC SFEEA+E+A+ GD+T+ D+LVRDIYGG YERF G+      
Sbjct: 211 TSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADRLVRDIYGGDYERF-GLPGWAVA 269

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M  KEKRE+VS+EDLARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +
Sbjct: 270 SSFGNMIYKEKRETVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTL 329

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYA+DYWSKG  KALFLEHE
Sbjct: 330 SMKLLAYALDYWSKGQLKALFLEHE 354

Plays a role in the physiological regulation of the intracellular CoA concentration.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 98/153 (64%), Gaps = 9/153 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           +S+GGGTF GL  LLT    F+E + LA+ G ++ VD LVRD+YGG+++       L   
Sbjct: 215 SSIGGGTFWGLGALLTKTKKFDELLHLASRGQHSNVDTLVRDVYGGAHQTLGLSGNLIAS 274

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG   S    +  S+ED+A++ L  I+N+IG +A + A   ++++V F G F+R +P++
Sbjct: 275 SFG--KSATADQEFSKEDMAKSLLHMISNDIGQLACLHARPHSLDRVYFGGFFIRGHPVT 332

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE--VCIIGIF 159
           M+ + Y+++++SKG  +ALFL HE  +  IG F
Sbjct: 333 MRTITYSINFFSKGEVQALFLRHEGYLGAIGAF 365

Plays a role in the physiological regulation of the intracellular CoA concentration.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q4R4U1|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 98/153 (64%), Gaps = 9/153 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           +S+GGGTF GL  LLT    F+E + LA+ G ++ VD LVRD+YGG+++       L   
Sbjct: 215 SSIGGGTFWGLGALLTKTKKFDELLHLASRGQHSNVDMLVRDVYGGAHQTLGLSGNLIAS 274

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG   S    +  S+ED+A++ L  I+N+IG +A + A   ++++V F G F+R +P++
Sbjct: 275 SFG--KSATADQEFSKEDMAKSLLHMISNDIGQLACLHARLHSLDRVYFGGFFIRGHPVT 332

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE--VCIIGIF 159
           M+ + Y+++++SKG  +ALFL HE  +  IG F
Sbjct: 333 MRTITYSINFFSKGEVQALFLRHEGYLGAIGAF 365

Plays a role in the physiological regulation of the intracellular CoA concentration.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 98/153 (64%), Gaps = 9/153 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           +S+GGGTF GL  LLT    F+E + LA+ G ++ VD LVRD+YGG+++       L   
Sbjct: 215 SSIGGGTFWGLGALLTKTKKFDELLHLASRGQHSNVDMLVRDVYGGAHQTLGLSGNLIAS 274

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG   S    +  S+ED+A++ L  I+N+IG +A + A   ++++V F G F+R +P++
Sbjct: 275 SFG--KSATADQEFSKEDMAKSLLHMISNDIGQLACLHARLHSLDRVYFGGFFIRGHPVT 332

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE--VCIIGIF 159
           M+ + Y+++++SKG  +ALFL HE  +  IG F
Sbjct: 333 MRTITYSINFFSKGEVQALFLRHEGYLGAIGAF 365

Plays a role in the physiological regulation of the intracellular CoA concentration.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q8L5Y9|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 96/161 (59%), Gaps = 9/161 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           T++GGGT+ GL  LLT C SF+E +EL+  GDN+ +D LV DIYGG     +G+      
Sbjct: 267 TNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNSAIDMLVGDIYGGMDYSKIGLSASTIA 326

Query: 68  FSFGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
            SFG   S+ K  +    ED++ + L  I+ NIG I+ ++A+   + ++ F G F+R + 
Sbjct: 327 SSFGKAISENKELDDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHA 386

Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE--VCIIGIFDHWTSH 165
            +M  +++A+ +WSKG  +A+FL HE  +  +G F  +  H
Sbjct: 387 YTMDTISFAVHFWSKGEMQAMFLRHEGFLGALGAFMSYEKH 427

Plays a role in the physiological regulation of the intracellular CoA concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
322789845	850	hypothetical protein SINV_09037 [Solenop	0.763	0.163	0.798	4e-61
282403503	404	fumble isoform 1 [Tribolium castaneum]	0.763	0.344	0.778	3e-60
282403505	399	fumble isoform 2 [Tribolium castaneum]	0.763	0.348	0.805	3e-60
242008541	358	Pantothenate kinase, putative [Pediculus	0.763	0.388	0.826	4e-60
282403501	367	fumble isoform 3 [Tribolium castaneum] g	0.763	0.378	0.805	4e-60
328783715	402	PREDICTED: pantothenate kinase 2, mitoch	0.763	0.345	0.812	6e-60
380024634	402	PREDICTED: pantothenate kinase 2, mitoch	0.763	0.345	0.812	6e-60
383866241	395	PREDICTED: pantothenate kinase 1-like [M	0.763	0.351	0.812	7e-60
311271615	603	PREDICTED: pantothenate kinase 1 [Sus sc	0.758	0.228	0.772	1e-59
307196721	358	Pantothenate kinase 1 [Harpegnathos salt	0.763	0.388	0.812	1e-59

>gi|322789845|gb|EFZ14992.1| hypothetical protein SINV_09037 [Solenopsis invicta]

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 115/144 (79%), Positives = 125/144 (86%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAI LAT GDNT+VDKLV+DIYGG Y  F     L   
Sbjct: 235 TSLGGGTFLGLCCLLTGCNTFEEAIGLATGGDNTRVDKLVKDIYGGDYGPFGLPGDLVAS 294

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNSK++R +V++EDLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 295 SFGQMNSKDRRNTVTKEDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 354

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMDYWSKGT KALFLEHE
Sbjct: 355 MKLLAYAMDYWSKGTLKALFLEHE 378

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282403503|ref|NP_001164147.1| fumble isoform 1 [Tribolium castaneum]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 126/149 (84%), Gaps = 10/149 (6%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF--------- 64
           TSLGGGTFLGLCCLLTGCN+FEEAI+LA  GDNT+VDKLVRDIYGG YERF         
Sbjct: 239 TSLGGGTFLGLCCLLTGCNTFEEAIQLAAEGDNTRVDKLVRDIYGGDYERFGLPGDLVAS 298

Query: 65  -LGMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLR 123
               FSFG MNS+EKR  VSR+DLARATLVTITNNIGSIARM AI E I++VVF+GNFLR
Sbjct: 299 SFSGFSFGQMNSREKRSKVSRQDLARATLVTITNNIGSIARMCAIQEKIDRVVFMGNFLR 358

Query: 124 VNPISMKLLAYAMDYWSKGTQKALFLEHE 152
           VNPI+MKLLAYAM+YWSKGT KALFLEHE
Sbjct: 359 VNPIAMKLLAYAMNYWSKGTMKALFLEHE 387

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282403505|ref|NP_001164149.1| fumble isoform 2 [Tribolium castaneum]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAI+LA  GDNT+VDKLVRDIYGG YERF     L   
Sbjct: 239 TSLGGGTFLGLCCLLTGCNTFEEAIQLAAEGDNTRVDKLVRDIYGGDYERFGLPGDLVAS 298

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNS+EKR  VSR+DLARATLVTITNNIGSIARM AI E I++VVF+GNFLRVNPI+
Sbjct: 299 SFGQMNSREKRSKVSRQDLARATLVTITNNIGSIARMCAIQEKIDRVVFMGNFLRVNPIA 358

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAM+YWSKGT KALFLEHE
Sbjct: 359 MKLLAYAMNYWSKGTMKALFLEHE 382

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008541|ref|XP_002425061.1| Pantothenate kinase, putative [Pediculus humanus corporis] gi|212508726|gb|EEB12323.1| Pantothenate kinase, putative [Pediculus humanus corporis]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 127/144 (88%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCNSFEEAI+LAT GD+T+VDKLVRDIYGG YERF     L   
Sbjct: 198 TSLGGGTFLGLCCLLTGCNSFEEAIDLATLGDHTRVDKLVRDIYGGDYERFGLPGDLVAS 257

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFGHMNSKEKR +V+REDLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 258 SFGHMNSKEKRINVTREDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 317

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAM+YWS  T KALFLEHE
Sbjct: 318 MKLLAYAMEYWSNNTLKALFLEHE 341

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282403501|ref|NP_001164148.1| fumble isoform 3 [Tribolium castaneum] gi|270002881|gb|EEZ99328.1| fumble [Tribolium castaneum]

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAI+LA  GDNT+VDKLVRDIYGG YERF     L   
Sbjct: 207 TSLGGGTFLGLCCLLTGCNTFEEAIQLAAEGDNTRVDKLVRDIYGGDYERFGLPGDLVAS 266

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNS+EKR  VSR+DLARATLVTITNNIGSIARM AI E I++VVF+GNFLRVNPI+
Sbjct: 267 SFGQMNSREKRSKVSRQDLARATLVTITNNIGSIARMCAIQEKIDRVVFMGNFLRVNPIA 326

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAM+YWSKGT KALFLEHE
Sbjct: 327 MKLLAYAMNYWSKGTMKALFLEHE 350

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783715|ref|XP_001121916.2| PREDICTED: pantothenate kinase 2, mitochondrial-like [Apis mellifera]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAIELAT GDNT+VDKLV+DIYGG Y  F     L   
Sbjct: 241 TSLGGGTFLGLCCLLTGCNTFEEAIELATGGDNTRVDKLVKDIYGGDYGPFGLPGDLVAS 300

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNSKE+R +VS++DLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 301 SFGQMNSKERRNAVSKQDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 360

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMDYWSKGT KALFLEHE
Sbjct: 361 MKLLAYAMDYWSKGTMKALFLEHE 384

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024634|ref|XP_003696098.1| PREDICTED: pantothenate kinase 2, mitochondrial-like [Apis florea]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAIELAT GDNT+VDKLV+DIYGG Y  F     L   
Sbjct: 241 TSLGGGTFLGLCCLLTGCNTFEEAIELATGGDNTRVDKLVKDIYGGDYGPFGLPGDLVAS 300

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNSKE+R +VS++DLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 301 SFGQMNSKERRNAVSKQDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 360

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMDYWSKGT KALFLEHE
Sbjct: 361 MKLLAYAMDYWSKGTMKALFLEHE 384

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866241|ref|XP_003708579.1| PREDICTED: pantothenate kinase 1-like [Megachile rotundata]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAIELAT GDNT+VDKLV+DIYGG Y  F     L   
Sbjct: 235 TSLGGGTFLGLCCLLTGCNTFEEAIELATGGDNTRVDKLVKDIYGGDYGPFGLPGDLVAS 294

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNSK++R +VS+EDLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 295 SFGQMNSKDRRNAVSKEDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 354

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMDYWSKGT KALFLEHE
Sbjct: 355 MKLLAYAMDYWSKGTMKALFLEHE 378

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|311271615|ref|XP_001926057.2| PREDICTED: pantothenate kinase 1 [Sus scrofa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/145 (77%), Positives = 127/145 (87%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLCCLLTGC +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+      
Sbjct: 441 TSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVA 499

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M SKEKRES+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +
Sbjct: 500 SSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMV 559

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYAMD+WSKG  KALFLEHE
Sbjct: 560 SMKLLAYAMDFWSKGQLKALFLEHE 584

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307196721|gb|EFN78180.1| Pantothenate kinase 1 [Harpegnathos saltator]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 126/144 (87%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGCN+FEEAIELAT GDNTKVDKLV+DIYGG Y  F     L   
Sbjct: 198 TSLGGGTFLGLCCLLTGCNTFEEAIELATGGDNTKVDKLVKDIYGGDYGPFGLPGDLVAS 257

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG MNSK++R +V++EDLARATLVTITNNIGSIARM A+NE I +VVFVGNFLRVNPIS
Sbjct: 258 SFGQMNSKDRRNAVTKEDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRVNPIS 317

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMDYWSKGT KALFLEHE
Sbjct: 318 MKLLAYAMDYWSKGTMKALFLEHE 341

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
UNIPROTKB|E1BS92	366	PANK1 "Uncharacterized protein	0.653	0.325	0.761	2.7e-45
UNIPROTKB|F1MX42	468	LOC535933 "Uncharacterized pro	0.653	0.254	0.746	2.4e-44
UNIPROTKB|Q08DA5	370	PANK3 "Pantothenate kinase 3"	0.653	0.321	0.761	2.4e-44
UNIPROTKB|Q9BZ23	570	PANK2 "Pantothenate kinase 2,	0.653	0.208	0.746	2.4e-44
UNIPROTKB|F1SCX8	604	PANK1 "Uncharacterized protein	0.653	0.197	0.746	2.4e-44
UNIPROTKB|Q9H999	370	PANK3 "Pantothenate kinase 3"	0.653	0.321	0.753	3.1e-44
UNIPROTKB|F1RR90	370	PANK3 "Uncharacterized protein	0.653	0.321	0.753	3.1e-44
UNIPROTKB|F1S8C7	575	PANK2 "Uncharacterized protein	0.659	0.208	0.732	3.9e-44
RGD|1305169	365	Pank2 "pantothenate kinase 2"	0.659	0.328	0.740	3.9e-44
UNIPROTKB|F1LT70	456	Pank2 "Protein Pank2" [Rattus	0.659	0.263	0.740	3.9e-44

UNIPROTKB|E1BS92 PANK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 96/126 (76%), Positives = 109/126 (86%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+       SFGHM SKEKR+S+S+ED
Sbjct:   223 TFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVASSFGHMMSKEKRDSISKED 281

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATLVTITNNIGSIARM A+NENI+KVVFVGNFLR+N ISMK+LAYAMDYWSKG  KA
Sbjct:   282 LARATLVTITNNIGSIARMCALNENIDKVVFVGNFLRINMISMKVLAYAMDYWSKGQLKA 341

Query:   147 LFLEHE 152
             LFLEHE
Sbjct:   342 LFLEHE 347

GO:0005524 "ATP binding" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

UNIPROTKB|F1MX42 LOC535933 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 94/126 (74%), Positives = 110/126 (87%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             +FEEA+E+A+ GD+TKVDKLVRDIYGG YERF G+       SFG+M SKEKRE+VS+ED
Sbjct:   328 TFEEALEMASRGDSTKVDKLVRDIYGGDYERF-GLPGWAVASSFGNMMSKEKREAVSKED 386

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATL+TITNNIGSIARM A+NENIN+VVFVGNFLR+N I+M+LLAYA+DYWSKG  KA
Sbjct:   387 LARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKA 446

Query:   147 LFLEHE 152
             LF EHE
Sbjct:   447 LFSEHE 452

GO:0005739 "mitochondrion" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q08DA5 PANK3 "Pantothenate kinase 3" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 96/126 (76%), Positives = 108/126 (85%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct:   230 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 288

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATLVTITNNIGSIARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct:   289 LARATLVTITNNIGSIARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 348

Query:   147 LFLEHE 152
             LFLEHE
Sbjct:   349 LFLEHE 354

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9BZ23 PANK2 "Pantothenate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 94/126 (74%), Positives = 110/126 (87%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             +FEEA+E+A+ GD+TKVDKLVRDIYGG YERF G+       SFG+M SKEKRE+VS+ED
Sbjct:   430 TFEEALEMASRGDSTKVDKLVRDIYGGDYERF-GLPGWAVASSFGNMMSKEKREAVSKED 488

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATL+TITNNIGSIARM A+NENIN+VVFVGNFLR+N I+M+LLAYA+DYWSKG  KA
Sbjct:   489 LARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKA 548

Query:   147 LFLEHE 152
             LF EHE
Sbjct:   549 LFSEHE 554

GO:0005524 "ATP binding" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0009108 "coenzyme biosynthetic process" evidence=TAS

GO:0015939 "pantothenate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SCX8 PANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 94/126 (74%), Positives = 109/126 (86%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+       SFG+M SKEKRES+S+ED
Sbjct:   461 TFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVASSFGNMMSKEKRESISKED 519

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +SMKLLAYAMD+WSKG  KA
Sbjct:   520 LARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKA 579

Query:   147 LFLEHE 152
             LFLEHE
Sbjct:   580 LFLEHE 585

GO:0071944 "cell periphery" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9H999 PANK3 "Pantothenate kinase 3" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 95/126 (75%), Positives = 108/126 (85%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct:   230 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 288

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct:   289 LARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 348

Query:   147 LFLEHE 152
             LFLEHE
Sbjct:   349 LFLEHE 354

GO:0005524 "ATP binding" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

UNIPROTKB|F1RR90 PANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 95/126 (75%), Positives = 108/126 (85%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
             SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct:   230 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 288

Query:    87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
             LARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct:   289 LARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 348

Query:   147 LFLEHE 152
             LFLEHE
Sbjct:   349 LFLEHE 354

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

UNIPROTKB|F1S8C7 PANK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 93/127 (73%), Positives = 108/127 (85%)

Query:    33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERF-------LGMFSFGHMNSKEKRESVSRE 85
             +FEEA+E+A+ GD+TKVDKLVRDIYGG YERF           SFG+M SKEKRE+VS+E
Sbjct:   433 TFEEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSHSFGNMMSKEKREAVSKE 492

Query:    86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQK 145
             DLARATL+TITNNIGSIARM A+NENIN+VVFVGNFLR+N I+M+LLAYA+DYWSKG  K
Sbjct:   493 DLARATLITITNNIGSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLK 552

Query:   146 ALFLEHE 152
             ALF EHE
Sbjct:   553 ALFSEHE 559

GO:0005739 "mitochondrion" evidence=IEA

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1305169 Pank2 "pantothenate kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 94/127 (74%), Positives = 110/127 (86%)

Query:    32 NSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRE 85
             ++FEEA+E+A+ GD+TKVDKLVRDIYGG YERF G+       SFG+M SKEKRE+ S+E
Sbjct:   224 STFEEALEMASRGDSTKVDKLVRDIYGGDYERF-GLPGWAVASSFGNMMSKEKREAASKE 282

Query:    86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQK 145
             DLARATL+TITNNIGSIARM A+NENIN+VVFVGNFLRVN I+M+LLAYA+DYWSKG  K
Sbjct:   283 DLARATLITITNNIGSIARMCALNENINQVVFVGNFLRVNTIAMRLLAYALDYWSKGQLK 342

Query:   146 ALFLEHE 152
             ALF EHE
Sbjct:   343 ALFSEHE 349

GO:0004594 "pantothenate kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0016310 "phosphorylation" evidence=ISO

UNIPROTKB|F1LT70 Pank2 "Protein Pank2" [Rattus norvegicus (taxid:10116)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 94/127 (74%), Positives = 110/127 (86%)

Query:    32 NSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRE 85
             ++FEEA+E+A+ GD+TKVDKLVRDIYGG YERF G+       SFG+M SKEKRE+ S+E
Sbjct:   315 STFEEALEMASRGDSTKVDKLVRDIYGGDYERF-GLPGWAVASSFGNMMSKEKREAASKE 373

Query:    86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQK 145
             DLARATL+TITNNIGSIARM A+NENIN+VVFVGNFLRVN I+M+LLAYA+DYWSKG  K
Sbjct:   374 DLARATLITITNNIGSIARMCALNENINQVVFVGNFLRVNTIAMRLLAYALDYWSKGQLK 433

Query:   146 ALFLEHE 152
             ALF EHE
Sbjct:   434 ALFSEHE 440

GO:0004594 "pantothenate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K4K6	PANK1_MOUSE	2, ., 7, ., 1, ., 3, 3	0.7655	0.7582	0.2518	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1.33	0.824
3rd Layer	2.7.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
pfam03630	329	pfam03630, Fumble, Fumble	9e-72
TIGR00555	296	TIGR00555, panK_eukar, pantothenate kinase, eukary	6e-57
PLN02920	398	PLN02920, PLN02920, pantothenate kinase 1	3e-32
COG5146	342	COG5146, PanK, Pantothenate kinase, acetyl-CoA reg	8e-32
PLN02902	876	PLN02902, PLN02902, pantothenate kinase	2e-30
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-16
PRK13317	277	PRK13317, PRK13317, pantothenate kinase; Provision	2e-12

>gnl|CDD|217646 pfam03630, Fumble, Fumble

 Score =  219 bits (560), Expect = 9e-72
 Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 8/146 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           +SLGGGTFLGL  LLTGC SF+E +++A  GDN+ VD LVRDIYGG Y +F G+      
Sbjct: 172 SSLGGGTFLGLGSLLTGCTSFDELLDMAQKGDNSNVDMLVRDIYGGDYSKF-GLKGDLIA 230

Query: 68  FSFGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
            SFG +  + KR E  S ED+AR+ L  I+NNIG IA + A+  N+ ++ F G+F+R NP
Sbjct: 231 SSFGKVFRELKRLEDFSPEDIARSLLRMISNNIGQIAYLCALRFNLKRIYFGGSFIRNNP 290

Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
           I+MK L+YA++YWSKG  KA FL HE
Sbjct: 291 ITMKTLSYAINYWSKGELKAYFLRHE 316

Fumble is required for cell division in Drosophila. Mutants lacking fumble exhibit abnormalities in bipolar spindle organisation, chromosome segregation, and contractile ring formation. Analyses have demonstrated that encodes three protein isoforms, all of which contain a domain with high similarity to the pantothenate kinases of A. nidulans and mouse. A role of fumble in membrane synthesis has been proposed. Length = 329

>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase, eukaryotic/staphyloccocal type

 Score =  180 bits (458), Expect = 6e-57
 Identities = 77/144 (53%), Positives = 97/144 (67%), Gaps = 8/144 (5%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGL  LLTG  +F+E +E+A  GD T VD LV DIYGG Y        L   
Sbjct: 145 TSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTAS 204

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG + SK   +S S ED+A + L  I NNIG IA + A+  NI+++VF+G+FLR N + 
Sbjct: 205 SFGKVLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLL 264

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MK+L+YA ++WSK   KALFLEHE
Sbjct: 265 MKVLSYATNFWSK---KALFLEHE 285

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 296

>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1

 Score =  118 bits (298), Expect = 3e-32
 Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 7/146 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFS---- 69
           TS+GGGTF GL  LLT C SF+E +EL+  G+N  +D LV DIYGG     +G+ S    
Sbjct: 193 TSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIA 252

Query: 70  --FGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
             FG   S  K  E    ED+AR+ L  I+NNIG I+ ++A+   + ++ F G F+R + 
Sbjct: 253 SSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHS 312

Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
            +M  ++ A+ +WSKG  KA+FL HE
Sbjct: 313 YTMDTISVAVHFWSKGEAKAMFLRHE 338

Length = 398

>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]

 Score =  116 bits (292), Expect = 8e-32
 Identities = 65/164 (39%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           +SLGGGT  GL  LLT    +++ +++A  GDN  VD LV DIYG  YE       L   
Sbjct: 173 SSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIAS 232

Query: 69  SFGHM--NSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
           SFG +  +  +  E  +  D+  + L  I+NNIG IA + A   N   + F G+F R + 
Sbjct: 233 SFGKVFHHRDKPLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHL 292

Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE--VCIIGIF-DHWTSHPA 167
           ++M  L YA+  WSK T  A FLEHE  +  IG F    TS P+
Sbjct: 293 LTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGAFYLGATSQPS 336

Length = 342

>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase

 Score =  116 bits (291), Expect = 2e-30
 Identities = 57/146 (39%), Positives = 90/146 (61%), Gaps = 7/146 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           T++GGGT+ GL  LLT C SF+E +EL+  GDN+ +D LV DIYGG     +G+      
Sbjct: 242 TNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIA 301

Query: 68  FSFGHMNSKEKR-ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
            SFG + S+ K       ED++ + L  I+ NIG I+ ++A+   + ++ F G F+R + 
Sbjct: 302 SSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHA 361

Query: 127 ISMKLLAYAMDYWSKGTQKALFLEHE 152
            +M  +++A+ +WSKG  +A+FL HE
Sbjct: 362 YTMDTISFAVHFWSKGEAQAMFLRHE 387

Length = 876

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 54/188 (28%), Positives = 78/188 (41%), Gaps = 51/188 (27%)

Query: 16   LGGGTFLGLCCLLTGCNSFEEAIE---LATSGDNTKVDKLVRDIYGGSYERFLGMFS--- 69
            +GG TF GL   +T   S+EE +E   L   GDN  VD LV DIYG + +    M S   
Sbjct: 1245 IGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDT 1304

Query: 70   ----FGHMNSK---EKRESVSRE------------------------------------- 85
                FG + ++   E    VS                                       
Sbjct: 1305 VASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASA 1364

Query: 86   -DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQ 144
             D+ R+ L  I++N+  +A + +  + +  + F G F+R NPI    ++  M YWSKG  
Sbjct: 1365 IDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGEC 1424

Query: 145  KALFLEHE 152
             A FLEH+
Sbjct: 1425 HAHFLEHD 1432

Length = 1452

>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF---LGMFSF 70
           T +GGGT  GL  LLT  + +E+ IELA  GD   +D  V DIY G        L   +F
Sbjct: 123 TGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNF 182

Query: 71  GHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNP 126
           G +      E  +  D+    +  +   I +++  +A  +NI  +V++G+ L  NP
Sbjct: 183 GKVLHHLDSEF-TSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNP 237

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG2201|consensus	371		100.0
PLN02920	398	pantothenate kinase 1	100.0
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	100.0
PLN02902	876	pantothenate kinase	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	100.0
COG5146	342	PanK Pantothenate kinase, acetyl-CoA regulated [Co	100.0
PRK13317	277	pantothenate kinase; Provisional	100.0
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	98.78
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	97.48
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	96.38
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.22
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	95.77
PRK09604	332	UGMP family protein; Validated	95.72
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	95.53
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	95.26
PRK14878	323	UGMP family protein; Provisional	95.04
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	92.66
COG0533	342	QRI7 Metal-dependent proteases with possible chape	91.92
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	91.87
TIGR00329	305	gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami	91.51
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	91.47
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	90.61
PTZ00294	504	glycerol kinase-like protein; Provisional	89.86
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	88.59
PRK15027	484	xylulokinase; Provisional	87.75
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	87.38
PRK09605	535	bifunctional UGMP family protein/serine/threonine	86.89
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	86.16
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	83.42

>KOG2201|consensus

Probab=100.00  E-value=2.1e-66  Score=456.97  Aligned_cols=160  Identities=56%  Similarity=0.832  Sum_probs=156.7

Q ss_pred             CCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccccc
Q psy6720           4 PNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEK   78 (182)
Q Consensus         4 ~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~   78 (182)
                      .+++|+|||||++||||||||++|||||++|||+++||++||+++|||+|+||||++|+++|     |||||||+.+.+|
T Consensus       192 ~~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK  271 (371)
T KOG2201|consen  192 GPDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEK  271 (371)
T ss_pred             cCCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999998     9999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI  158 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga  158 (182)
                      +.++++||+|+|||.||+|||||+|+|+|+++|++||||+|+|+|+||++|++|++|++|||+|++||+|||||||+ ||
T Consensus       272 ~~~~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYl-Ga  350 (371)
T KOG2201|consen  272 ELSVSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLSYAINFWSKGELKALFLRHEGYL-GA  350 (371)
T ss_pred             ccccChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHHHHHHHHhccchHHhHhhhccchh-HH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hHHhhc
Q psy6720         159 FDHWTS  164 (182)
Q Consensus       159 ~~a~~~  164 (182)
                      ++|+++
T Consensus       351 lGAfL~  356 (371)
T KOG2201|consen  351 LGAFLS  356 (371)
T ss_pred             HHHHhh
Confidence            999886

>PLN02920 pantothenate kinase 1

Probab=100.00  E-value=7.6e-58  Score=411.66  Aligned_cols=159  Identities=42%  Similarity=0.642  Sum_probs=149.2

Q ss_pred             CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCC-CCCCcc-----ccccccccccccc-
Q psy6720           6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGG-SYERFL-----GMFSFGHMNSKEK-   78 (182)
Q Consensus         6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~-~~~~lg-----iASsFGK~~~~~~-   78 (182)
                      ++|+|||||+|||||||||++|||+++||+|+++||++||+++|||+|+||||+ +|+++|     |||||||+....+ 
T Consensus       185 ~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~  264 (398)
T PLN02920        185 GKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKE  264 (398)
T ss_pred             CcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCceeccccCCCCCCCCCCCccceeeccCcccccccc
Confidence            499999999999999999999999999999999999999999999999999996 788775     9999999976332 


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI  158 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga  158 (182)
                      .+++++||+|+|||.||+|||||+|+++|++++++||||+|+|+++||++|++|++|++|||+++++|+|||||||+ ||
T Consensus       265 ~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYl-GA  343 (398)
T PLN02920        265 LEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFL-GA  343 (398)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchh-HH
Confidence            25789999999999999999999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             hHHhhcC
Q psy6720         159 FDHWTSH  165 (182)
Q Consensus       159 ~~a~~~~  165 (182)
                      ++|++.-
T Consensus       344 lGAfl~~  350 (398)
T PLN02920        344 LGAFMSY  350 (398)
T ss_pred             HHHHHhc
Confidence            8887553

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=100.00  E-value=2.2e-58  Score=409.93  Aligned_cols=160  Identities=49%  Similarity=0.833  Sum_probs=140.4

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----cccccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEKR   79 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~~   79 (182)
                      +++|+|||||+|||||||||++||||++||||+++||++||+++|||+|+||||++|++++     |||||||+....++
T Consensus       175 ~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDllV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~  254 (341)
T PF03630_consen  175 PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDLLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKR  254 (341)
T ss_dssp             TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSEEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH
T ss_pred             CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCceeeeccCCCcccCCCCHHHHHhhhhhhhhcccc
Confidence            5679999999999999999999999999999999999999999999999999999998765     99999999876533


Q ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720          80 -ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI  158 (182)
Q Consensus        80 -~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga  158 (182)
                       +++++||+|+|||+||++||||+|+++|+++|++||||+|+++++||.+|+++++|++|||+++++|+|+||+||+ ||
T Consensus       255 ~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~-ga  333 (341)
T PF03630_consen  255 KDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYL-GA  333 (341)
T ss_dssp             -CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSH-HH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchh-HH
Confidence             6899999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hHHhhcC
Q psy6720         159 FDHWTSH  165 (182)
Q Consensus       159 ~~a~~~~  165 (182)
                      +||+..+
T Consensus       334 lGa~l~~  340 (341)
T PF03630_consen  334 LGAFLKH  340 (341)
T ss_dssp             HHHHHTH
T ss_pred             HHHHHhc
Confidence            9888753

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>PLN02902 pantothenate kinase

Probab=100.00  E-value=9.5e-56  Score=425.78  Aligned_cols=161  Identities=37%  Similarity=0.626  Sum_probs=150.5

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCC-CCCCcc-----ccccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGG-SYERFL-----GMFSFGHMNSKEK   78 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~-~~~~lg-----iASsFGK~~~~~~   78 (182)
                      +++|+|||||+|||||||||++||||++||+|+++||++||+++|||+|+||||+ +|+.+|     |||||||+....+
T Consensus       233 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~  312 (876)
T PLN02902        233 DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENK  312 (876)
T ss_pred             CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCeeeccccCCCCcCCCCCCcchhhhccCccccccc
Confidence            4599999999999999999999999999999999999999999999999999997 888876     9999999976443


Q ss_pred             -ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhh
Q psy6720          79 -RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIG  157 (182)
Q Consensus        79 -~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~g  157 (182)
                       .+++++||+|+|||.||+|||||+|+|+|++||++||||+|+|||+||++|++|++|++|||+++++|+|||||||+ |
T Consensus       313 ~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGyl-G  391 (876)
T PLN02902        313 ELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFL-G  391 (876)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchh-H
Confidence             34689999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             hhHHhhcCC
Q psy6720         158 IFDHWTSHP  166 (182)
Q Consensus       158 a~~a~~~~~  166 (182)
                      |+||+++..
T Consensus       392 AlGafl~~~  400 (876)
T PLN02902        392 ALGAFMSYE  400 (876)
T ss_pred             HHHHHhcCC
Confidence            888775543

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=4.9e-53  Score=427.07  Aligned_cols=162  Identities=34%  Similarity=0.541  Sum_probs=148.9

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHH---HHhcCCCCCCcceeccccCCCCCCc----c---ccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIE---LATSGDNTKVDKLVRDIYGGSYERF----L---GMFSFGHMN   74 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~---lA~~Gd~~~vDllV~DIyg~~~~~l----g---iASsFGK~~   74 (182)
                      +++|+|||||+|||||||||++||||++||||+++   ||++||++||||+|+||||.+|..+    .   |||||||+.
T Consensus      1234 ~~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~ 1313 (1452)
T PTZ00297       1234 DGSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLG 1313 (1452)
T ss_pred             CCcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhCCCccccceEEeeccCCCcccccCCCCcceeeeccCccc
Confidence            57999999999999999999999999999999998   7999999999999999999876543    2   999999995


Q ss_pred             ccc-----------------------------------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy6720          75 SKE-----------------------------------------KRESVSREDLARATLVTITNNIGSIARMSAINENIN  113 (182)
Q Consensus        75 ~~~-----------------------------------------~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~  113 (182)
                      ...                                         .++++++||||+|||.||+|||||+|+|+|+.||++
T Consensus      1314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~ 1393 (1452)
T PTZ00297       1314 TERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVP 1393 (1452)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            310                                         023478999999999999999999999999999999


Q ss_pred             EEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHhhcCCC
Q psy6720         114 KVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHWTSHPA  167 (182)
Q Consensus       114 ~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~~~~~~  167 (182)
                      ||||+|+|+|+||++|++|++|++|||+|+++|+|||||||+ ||+||+...+.
T Consensus      1394 ~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~-ga~Ga~~~~~~ 1446 (1452)
T PTZ00297       1394 NIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYL-GALGCATLDPD 1446 (1452)
T ss_pred             EEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCcccc-HHhhhhhcCCC
Confidence            999999999999999999999999999999999999999999 99999988654

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=100.00  E-value=8.7e-52  Score=359.36  Aligned_cols=158  Identities=49%  Similarity=0.699  Sum_probs=149.0

Q ss_pred             CcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccc
Q psy6720           2 KIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSK   76 (182)
Q Consensus         2 ~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~   76 (182)
                      ||...+|+||+||+|||||||||++|||++.||+|+++||++||++++||+|+||||++|+..+     |||||||+..+
T Consensus       116 ~v~~~~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~  195 (279)
T TIGR00555       116 YVDGDNYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSK  195 (279)
T ss_pred             EEcCccEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhcc
Confidence            4556699999999999999999999999999999999999999999999999999999998776     99999999875


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhh
Q psy6720          77 EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCII  156 (182)
Q Consensus        77 ~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~  156 (182)
                      ..++.+++||+|+||++||++||||+|+++|++++++||+|+|++++.||.+|++++++++||+   .+++||||+||+ 
T Consensus       196 ~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~---~~~ifp~h~~y~-  271 (279)
T TIGR00555       196 HLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS---KKALFLEHEGYS-  271 (279)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC---ceEEEECCcchH-
Confidence            4467899999999999999999999999999999999999999999999999999999999996   999999999999 


Q ss_pred             hhhHHhh
Q psy6720         157 GIFDHWT  163 (182)
Q Consensus       157 ga~~a~~  163 (182)
                      ||++|..
T Consensus       272 gAlGAaL  278 (279)
T TIGR00555       272 GAIGALL  278 (279)
T ss_pred             HHhhhcc
Confidence            8877764

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]

Probab=100.00  E-value=9.8e-51  Score=348.22  Aligned_cols=159  Identities=38%  Similarity=0.518  Sum_probs=151.4

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----ccccccccccccc-
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEK-   78 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~-   78 (182)
                      +++|+|||||++||||+|||.+|||+..||||++++|+.||++.|||+|+||||.+|++.|     |||||||+..... 
T Consensus       164 psqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~glks~~iAssFGkVf~~r~k  243 (342)
T COG5146         164 PSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIASSFGKVFHHRDK  243 (342)
T ss_pred             cchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCCCchhhHHHHHHHHHhhcC
Confidence            6889999999999999999999999999999999999999999999999999999998887     9999999976432 


Q ss_pred             -ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhh
Q psy6720          79 -RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIG  157 (182)
Q Consensus        79 -~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~g  157 (182)
                       .+++.+.|+.+|||..|++||||+||++|+.+++++|||.|+|.|+|-.+|.+++||+.|||+..++|+|+|||||+ |
T Consensus       244 ~le~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegyl-G  322 (342)
T COG5146         244 PLEEFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYL-G  322 (342)
T ss_pred             chhhcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhhhhhHHHHHhhcCcccceeeeeccchh-h
Confidence             26799999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             hhHHhhc
Q psy6720         158 IFDHWTS  164 (182)
Q Consensus       158 a~~a~~~  164 (182)
                      |++|+..
T Consensus       323 a~GAf~~  329 (342)
T COG5146         323 AIGAFYL  329 (342)
T ss_pred             HHHHHhh
Confidence            8888765

>PRK13317 pantothenate kinase; Provisional

Probab=100.00  E-value=5e-40  Score=284.90  Aligned_cols=157  Identities=27%  Similarity=0.396  Sum_probs=145.0

Q ss_pred             CcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---ccccccccccccc
Q psy6720           2 KIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEK   78 (182)
Q Consensus         2 ~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~   78 (182)
                      +|.+++++|++||++||||+|||++||++..||+|+++||++||++++||+|+|||+.++++++   +||+|||+... .
T Consensus       111 ~~~g~~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l-~  189 (277)
T PRK13317        111 YVDGNSQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHH-L  189 (277)
T ss_pred             EEeCCceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhh-h
Confidence            3567799999999999999999999999999999999999999999999999999999888776   99999997543 2


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI  158 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga  158 (182)
                      .+.+++||||+||+.||+++|+++|+++|+.+++++|+|+|+.++.||.+++.++   ++|+..+.+++|++|++|+ ||
T Consensus       190 ~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~---~~l~~~~~~~~~p~~~~~~-gA  265 (277)
T PRK13317        190 DSEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIE---SYTKLRNCTPIFLENGGYS-GA  265 (277)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHH---HHHhcCCceEEecCCCchh-HH
Confidence            4678999999999999999999999999999999999999999999999999999   7999999999999999999 77


Q ss_pred             hHHhh
Q psy6720         159 FDHWT  163 (182)
Q Consensus       159 ~~a~~  163 (182)
                      ++|..
T Consensus       266 lGAaL  270 (277)
T PRK13317        266 IGALL  270 (277)
T ss_pred             HHHHH
Confidence            76643

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=98.78  E-value=8.7e-08  Score=87.83  Aligned_cols=129  Identities=19%  Similarity=0.095  Sum_probs=99.4

Q ss_pred             Eeccccc--chhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccccccccCCCHHHH
Q psy6720          10 CVLLTSL--GGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKRESVSREDL   87 (182)
Q Consensus        10 rvgGs~i--GGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~~~~~~~eDi   87 (182)
                      +.+++..  +|+++..++++|  .-+++|+.++|.+++.+++|+...++-=.. +++-.+.++|          .++|||
T Consensus       267 ~MNdkCAAGTGrFLE~~A~~L--gi~ieEl~~lA~~~~~~pv~IsS~CtVFae-SevIsll~~G----------~~~eDI  333 (404)
T TIGR03286       267 TMGGICAGASGRFLEMTAKRL--GVDITELGKLALKGMPEKVRMNSYCIVFGI-QDLVTALAEG----------ASPEDV  333 (404)
T ss_pred             EEcCcccccCcHHHHHHHHHh--CCCHHHHHHHHHhCCCCCCCccCccccccc-HhHHHHHHCC----------CCHHHH
Confidence            6777777  889999999999  569999999999999889998876652111 1121444544          689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHh
Q psy6720          88 ARATLVTITNNIGSIARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHW  162 (182)
Q Consensus        88 a~SLl~Mv~~nIg~la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~  162 (182)
                      +++|.++|++++..   ..++..++++ |+|+|.. ..|+-..+.++.   ..   +.+.++++|.+|. ||+||-
T Consensus       334 aAGl~~SIa~rv~~---~l~~~~~i~~~VvftGGv-a~N~gvv~ale~---~L---g~~iivPe~pq~~-GAiGAA  398 (404)
T TIGR03286       334 AAAACHSVAEQVYE---QQLQEIDVREPVILVGGT-SLIEGLVKALGD---LL---GIEVVVPEYSQYI-GAVGAA  398 (404)
T ss_pred             HHHHHHHHHHHHHH---HHhhcCCCCCcEEEECCh-hhhHHHHHHHHH---Hh---CCcEEECCcccHH-HHHHHH
Confidence            99999999999876   5567778886 9999995 566666666663   33   6789999999999 777763

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=97.48  E-value=0.0021  Score=54.34  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             ccchhhHH-HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-cccccccccccc-cccCCCHHHHHHHH
Q psy6720          15 SLGGGTFL-GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-GMFSFGHMNSKE-KRESVSREDLARAT   91 (182)
Q Consensus        15 ~iGGGT~~-GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-iASsFGK~~~~~-~~~~~~~eDia~SL   91 (182)
                      +.|+|.|+ -+++.| | -+++|+-+++.++..              .++++ +.+-|.+-.... ..+..+++|+++++
T Consensus       123 a~Gtg~f~e~~a~~l-~-~~~~e~~~~~~~~~~--------------~~~~~~~c~vf~~s~vi~~l~~g~~~~di~~~~  186 (248)
T TIGR00241       123 AAGTGRFLEVTARRL-G-VSVEELGSLAEKADR--------------KAKISSMCTVFAESELISLLAAGVKKEDILAGV  186 (248)
T ss_pred             cccccHHHHHHHHHc-C-CCHHHHHHHHhcCCC--------------CCCcCCEeEEEechhHHHHHHCCCCHHHHHHHH
Confidence            45666443 444444 5 589999999888753              12232 344455422110 12347899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC-EEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHHh
Q psy6720          92 LVTITNNIGSIARMSAINENIN-KVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDHW  162 (182)
Q Consensus        92 l~Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a~  162 (182)
                      ...++++|..++    +..+++ +|+++|.. ..|+..++.++.   +.   +.+.+.++|..+. ||+||-
T Consensus       187 ~~~va~~i~~~~----~~~~~~~~Vvl~GGv-a~n~~l~~~l~~---~l---g~~v~~~~~~~~~-~AlGaA  246 (248)
T TIGR00241       187 YESIAERVAEML----QRLKIEAPIVFTGGV-SKNKGLVKALEK---KL---GMKVITPPEPQIV-GAVGAA  246 (248)
T ss_pred             HHHHHHHHHHHH----hhcCCCCCEEEECcc-ccCHHHHHHHHH---Hh---CCcEEcCCCccHH-HHHHHH
Confidence            999999999754    445677 99999996 557878888884   44   5677788888887 777763

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=96.38  E-value=0.047  Score=50.82  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-ccccccccccc-ccccCCCHHHHHHHHH
Q psy6720          15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-GMFSFGHMNSK-EKRESVSREDLARATL   92 (182)
Q Consensus        15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-iASsFGK~~~~-~~~~~~~~eDia~SLl   92 (182)
                      +-|-|.|+--..-.++. +.+|+-++|.+.++ .+.             ++ ..+-|.+-... ...+-+++|||+++|.
T Consensus       300 AAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~~-pv~-------------ISS~CtVFAESEVIslla~G~~reDIaAGL~  364 (432)
T TIGR02259       300 AAGCGRYLGYIADEMNM-GLHELGPLAMKSSK-PAR-------------INSTCTVFAGAELRDRLALGDKREDILAGLH  364 (432)
T ss_pred             cccchHHHHHHHHHcCC-CHHHHHHHHhcCCC-CCC-------------cCCcceEEehHHHHHHHHCCCCHHHHHHHHH
Confidence            44667777666666675 89999999988752 221             21 22444442110 1135689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCC-CEEEEEcccccccHHHHHHHHHHHHHHhc--CCceEEEecCCchhhhhhHHh
Q psy6720          93 VTITNNIGSIARMSAINENI-NKVVFVGNFLRVNPISMKLLAYAMDYWSK--GTQKALFLEHEVCIIGIFDHW  162 (182)
Q Consensus        93 ~Mv~~nIg~la~l~A~~~~i-~~Ivf~G~~i~~~~~~m~~i~~ai~yws~--g~~~alFl~h~gyl~ga~~a~  162 (182)
                      ..|..++.++   ..+..++ ++|+|+|-. ..|+-..+.++   +.+..  ++.+.+.++|..|. ||+||-
T Consensus       365 ~SIA~Rv~s~---l~r~~~i~~~VvftGGv-A~N~gvv~aLe---~~L~~~~~~~~V~Vp~~pq~~-GALGAA  429 (432)
T TIGR02259       365 RAIILRAISI---ISRSGGITDQFTFTGGV-AKNEAAVKELR---KLIKENYGEVQINIDPDSIYT-GALGAS  429 (432)
T ss_pred             HHHHHHHHHH---HhcccCCCCCEEEECCc-cccHHHHHHHH---HHHccccCCCeEecCCCccHH-HHHHHH
Confidence            9999977655   4444344 489999996 66777778887   45532  35677788999998 888763

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.22  E-value=0.064  Score=46.98  Aligned_cols=126  Identities=12%  Similarity=0.130  Sum_probs=77.7

Q ss_pred             ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHH
Q psy6720          15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLV   93 (182)
Q Consensus        15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~   93 (182)
                      +-|-|.|+--..-.++. +.+|+-++|.+.+ +.+++     -+       .-+-|.+-... ...+-.++|||+++|..
T Consensus       130 AAGTG~FLe~~A~~L~i-~leel~~~a~~~~-~~~~i-----ss-------~CtVFaeSevi~~~~~G~~~edI~aGl~~  195 (262)
T TIGR02261       130 ASGSGQFLENIARYLGI-AQDEIGSLSQQAD-NPEKV-----SG-------ICAVLAETDVINMVSRGISAPNILKGIHE  195 (262)
T ss_pred             cccccHHHHHHHHHhCC-CHHHHHHHHhcCC-CCCCc-----CC-------CceEEchhhHHHHHHCCCCHHHHHHHHHH
Confidence            44667777766666564 7899999987774 22221     11       22444442110 11356899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCC-EEEEEcccccccHHHHHHHHHHHHHHhcCC--ceEEEecCCchhhhhhHHh
Q psy6720          94 TITNNIGSIARMSAINENIN-KVVFVGNFLRVNPISMKLLAYAMDYWSKGT--QKALFLEHEVCIIGIFDHW  162 (182)
Q Consensus        94 Mv~~nIg~la~l~A~~~~i~-~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~--~~alFl~h~gyl~ga~~a~  162 (182)
                      .|+.++..+   ..+....+ +|+|+|-. ..|+-..+.++.   .....+  +...-++|..|. ||++|-
T Consensus       196 sia~r~~~~---~~~~~~~~~~v~~~GGv-a~n~~~~~~le~---~l~~~~~~~~v~~~~~~q~~-gAlGAA  259 (262)
T TIGR02261       196 SMADRLAKL---LKSLGALDGTVLCTGGL-ALDAGLLEALKD---AIQEAKMAVAAENHPDAIYA-GAIGAA  259 (262)
T ss_pred             HHHHHHHHH---HhccCCCCCcEEEECcc-cccHHHHHHHHH---HhccCCcceEecCCCcchHH-HHHHHH
Confidence            999987533   33443444 69999995 777777677773   332222  223345566777 887763

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=95.77  E-value=0.15  Score=45.34  Aligned_cols=123  Identities=11%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             ccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHH
Q psy6720          15 SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLV   93 (182)
Q Consensus        15 ~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~   93 (182)
                      +-|-|.|+=-..-.++. +.+|+-++|.+.+.+.+++-     +       .-+=|.+-... ...+-+++|||+++|..
T Consensus       158 AAGTGrFLE~~A~~Lgi-~leel~~~a~~~~~~p~~Is-----s-------~CtVFAeSevi~l~~~G~~~edI~aGl~~  224 (293)
T TIGR03192       158 AAGTGRGMEVISDLMQI-PIADLGPRSFDVETEPEAVS-----S-------ICVVFAKSEALGLLKAGYTKNMVIAAYCQ  224 (293)
T ss_pred             cccccHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCCcC-----C-------cceEeccHhHHHHHHCCCCHHHHHHHHHH
Confidence            44667776666555574 78999888865542222221     1       23444442110 11356899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEE-EecCCchhhhhhHH
Q psy6720          94 TITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKAL-FLEHEVCIIGIFDH  161 (182)
Q Consensus        94 Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~al-Fl~h~gyl~ga~~a  161 (182)
                      .|+.++..   +..+..--++|+|+|-. ..|+-..+.++.   ..   +.+.. .++|..|. ||+||
T Consensus       225 sia~rv~~---~~~~~~i~~~v~~~GGv-a~N~~l~~al~~---~L---g~~v~~~p~~p~~~-GAlGA  282 (293)
T TIGR03192       225 AMAERVVS---LLERIGVEEGFFITGGI-AKNPGVVKRIER---IL---GIKAVDTKIDSQIA-GALGA  282 (293)
T ss_pred             HHHHHHHH---HhcccCCCCCEEEECcc-cccHHHHHHHHH---Hh---CCCceeCCCCccHH-HHHHH
Confidence            99998633   33443333469999995 667777777773   33   33333 36677888 77665

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PRK09604 UGMP family protein; Validated

Probab=95.72  E-value=0.15  Score=45.38  Aligned_cols=139  Identities=12%  Similarity=0.000  Sum_probs=86.0

Q ss_pred             CCCCceEeccc-ccchhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCcceec-cccCCCCCCcc--cccccccccccc
Q psy6720           4 PNLSPLCVLLT-SLGGGTFLGLCCLLTGCNSFEE--AIELATSGDNTKVDKLVR-DIYGGSYERFL--GMFSFGHMNSKE   77 (182)
Q Consensus         4 ~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~f~e--i~~lA~~Gd~~~vDllV~-DIyg~~~~~lg--iASsFGK~~~~~   77 (182)
                      ..++++.++.| ...=|-++.-+-..+|...+.+  +..||..|+...+++... +.-+.+..-.|  ++..  ++..  
T Consensus       146 ~~~~~~~l~~t~d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~g~~~~~~~~~~~~~~~~~~sfsg~~~~~~--~~~~--  221 (332)
T PRK09604        146 GIGDYELLGETLDDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQGDPDAFKFPRPMDRPGLDFSFSGLKTAVL--NTIE--  221 (332)
T ss_pred             CCCcEEEccccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHHhCCCCeEeCCccccCCCccEecCcHHHHHH--HHHH--
Confidence            35677777765 2455666666666667664444  999999998654443211 11111111111  1111  1111  


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720          78 KRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH  151 (182)
Q Consensus        78 ~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h  151 (182)
                       ..+.+++|+|+++...+.+.+..++..+.+.+++++|+++|....| ..+.+.|.   +...+..++.++.+.
T Consensus       222 -~~~~~~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N-~~L~~~l~---~~~~~~g~~v~~~~~  290 (332)
T PRK09604        222 -KSEQTKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAAN-SGLRERLA---ELAKKRGIEVFIPPL  290 (332)
T ss_pred             -hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHH-HHHHHHHH---HHHHHCCCEEECCCC
Confidence             0134579999999999999999999999999999999999997554 44445555   233445666555443

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=95.53  E-value=0.12  Score=45.69  Aligned_cols=143  Identities=13%  Similarity=0.032  Sum_probs=84.7

Q ss_pred             CCCCceEeccc-ccchhhHHHHHHhhcCCCCHHH--HHHHHhcCCCCCCcceecccc---CCCCCCccccccccccccc-
Q psy6720           4 PNLSPLCVLLT-SLGGGTFLGLCCLLTGCNSFEE--AIELATSGDNTKVDKLVRDIY---GGSYERFLGMFSFGHMNSK-   76 (182)
Q Consensus         4 ~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~f~e--i~~lA~~Gd~~~vDllV~DIy---g~~~~~lgiASsFGK~~~~-   76 (182)
                      ..+++++++.| ...=|-+.--+..++|...+++  ++.||..|+....++.. .+.   +.++.-.|+-+..-+.... 
T Consensus       145 ~~~~~~~l~~t~d~SlG~~yd~vt~~LG~~~~~g~kvmgLA~~g~~~~~~~~~-~~~~~~~~~~sfsg~~~~~~~~~~~~  223 (314)
T TIGR03723       145 GVGDYELLGETLDDAAGEAFDKVARLLGLGYPGGPAIDKLAKEGDPKAFKFPR-PMTGRPGLDFSFSGLKTAVLNLIEKL  223 (314)
T ss_pred             cCCeEEEeeccCCchhhHHHHHHHHHcCCCCCCcHHHHHHHhhCCCCEeECCh-hhccCCCCCEecccHHHHHHHHHHhc
Confidence            35667777665 2334555555555567654444  99999999865454321 111   1111111111000011000 


Q ss_pred             -ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720          77 -EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH  151 (182)
Q Consensus        77 -~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h  151 (182)
                       .++++..++|+|+++...+.+.+..++..+.+.+++++|+++|.-..|.- +.+.+.   +......++.++.+.
T Consensus       224 ~~~~~~~~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~-l~~~l~---~~~~~~~~~v~~~~~  295 (314)
T TIGR03723       224 KQKGEELDKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSR-LRERLE---ELAEKAGLEVFIPPL  295 (314)
T ss_pred             ccCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHH-HHHHHH---HHHHHCCCEEECCCC
Confidence             00112357899999999999999999999999999999999999755544 445555   344445676655443

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=95.26  E-value=0.13  Score=45.51  Aligned_cols=137  Identities=15%  Similarity=0.019  Sum_probs=78.9

Q ss_pred             CcCCCCceEeccc-ccchhhHHHHHHhhcCCCC---HHHHHHHHhcCCCC-CCcceeccccCCCCCCccccccccccccc
Q psy6720           2 KIPNLSPLCVLLT-SLGGGTFLGLCCLLTGCNS---FEEAIELATSGDNT-KVDKLVRDIYGGSYERFLGMFSFGHMNSK   76 (182)
Q Consensus         2 ~~~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~---f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lgiASsFGK~~~~   76 (182)
                      ++..++++.++.| -.+=|-++--+..++|...   . ++-++|.+|+.. +++.-+.+   ..   +..+.-+..+...
T Consensus       136 ~~~~~~~~~l~~t~d~s~GrlfDava~~LGl~~~G~~-~le~la~~~~~~~~~~~~~~~---~~---~~fs~l~~~~~~~  208 (322)
T TIGR03722       136 AYRNGRYRVFGETLDIGLGNALDKFAREVGLGHPGGP-KIEELAEKGKEYIELPYTVKG---MD---LSFSGLLTAALRA  208 (322)
T ss_pred             EEeCCeEEEEEEeccccchHHHHHHHHHhCCCCCChH-HHHHHHhcCCCcccCCccCCC---Cc---CchHHHHHHHHHH
Confidence            3445678888776 2344444444444445443   3 455577777432 22211111   01   1000001111110


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          77 EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        77 ~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      - +...+++|+|+++...+.+.+..++..+++.+++++|+++|-... |..+.+.|.   +...+..++.++.+
T Consensus       209 ~-~~~~~~~diAasfq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~-N~~L~~~l~---~~l~~~g~~v~~~~  277 (322)
T TIGR03722       209 Y-KKGARLEDVCYSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAA-NRRLREMLE---LMAEDRGAKFYVPP  277 (322)
T ss_pred             H-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHH-HHHHHHHHH---HHHHHCCCEEEcCC
Confidence            0 112457999999999999999999999999999999999999755 555555555   34445567654433

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>PRK14878 UGMP family protein; Provisional

Probab=95.04  E-value=0.17  Score=44.82  Aligned_cols=134  Identities=14%  Similarity=0.083  Sum_probs=80.3

Q ss_pred             CcCCCCceEeccc-ccchhhHHHHHHhhcCCC---CHHHHHHHHhcCCCC-CCcceeccccCCCCCCcccccccccccc-
Q psy6720           2 KIPNLSPLCVLLT-SLGGGTFLGLCCLLTGCN---SFEEAIELATSGDNT-KVDKLVRDIYGGSYERFLGMFSFGHMNS-   75 (182)
Q Consensus         2 ~~~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~---~f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lgiASsFGK~~~-   75 (182)
                      ++..++|+.++.| -.+-|=++--+..++|..   ... +-++|.+++.. +++.-+.   +.+       -+|-.+.. 
T Consensus       135 ~~~~~~~~~~~~t~d~s~Gr~fD~vA~~LGl~~~G~~~-lE~~a~~~~~~~~~p~~~~---~~~-------~~fsgl~~~  203 (323)
T PRK14878        135 AFRGGRYRVFGETLDIAIGNALDTFAREVGLAPPGGPA-IEKCAEKGEKYIELPYVVK---GQD-------LSFSGLLTA  203 (323)
T ss_pred             EEeCCeEEEeeeecCcchhHHHHHHHHHcCCCCCChhH-HHHHHhhCCCcCcCCccCc---CCC-------CcchHHHHH
Confidence            4556778888876 355555554444444544   222 44557766432 2222221   111       12211100 


Q ss_pred             --cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          76 --KEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        76 --~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                        ....+..+++|||+++...+.+.+..++..+++.+++++|+++|-... |..+++.+..   ...+.+++.+|.+
T Consensus       204 v~~~i~~~~~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~-N~~L~~~l~~---~~~~~g~~v~~~~  276 (323)
T PRK14878        204 ALRLYKGKERLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAA-NRRLREKLEI---MAEDRGAKFYVVP  276 (323)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHH-HHHHHHHHHH---HHHHCCCEEECCC
Confidence              000122457999999999999999999999999999999999999754 5555565553   3344567765544

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=92.66  E-value=0.95  Score=41.92  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=75.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHHHHHHHHHH
Q psy6720          23 GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLVTITNNIGS  101 (182)
Q Consensus        23 GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~Mv~~nIg~  101 (182)
                      =.++.| | -+.+|+-++|.+++.. +++-     +       ..+=|+.-.-. ...+-+++|||+++|...|.+|+..
T Consensus       270 ~~A~~L-g-v~v~E~~~~A~~~~~~-v~i~-----S-------~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~  334 (396)
T COG1924         270 VIARRL-G-VDVEELGKLALKATPP-VKIN-----S-------RCAVFAESEVISALAEGASPEDILAGLAYSVAENVAE  334 (396)
T ss_pred             HHHHHh-C-CCHHHHHHHHhcCCCC-cccC-----C-------eeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            344444 3 5899999999999854 3322     1       12333321100 1135689999999999999988754


Q ss_pred             HHHHHHHHhCCCE-EEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHH
Q psy6720         102 IARMSAINENINK-VVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDH  161 (182)
Q Consensus       102 la~l~A~~~~i~~-Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a  161 (182)
                         ...+.-+++. ||+.|.. ..|.-..+.++   ++.   +.+.+-+.|.++. ||+||
T Consensus       335 ---~~~~~~~i~~~iv~~GGv-a~n~av~~ale---~~l---g~~V~vP~~~ql~-GAiGA  384 (396)
T COG1924         335 ---KVIKRVDIEEPIVLQGGV-ALNKAVVRALE---DLL---GRKVIVPPYAQLM-GAIGA  384 (396)
T ss_pred             ---HHhhccCCCCCEEEECcc-hhhHHHHHHHH---HHh---CCeeecCCccchh-hHHHH
Confidence               2456777777 9999997 55555556555   444   5788889999998 77766

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=1  Score=41.07  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             CCceEeccc---ccchhhHHHHHHhh-cCCCCHHHHHHHHhcCCCCCCcceeccccC----CCCCCcccccccccccccc
Q psy6720           6 LSPLCVLLT---SLGGGTFLGLCCLL-TGCNSFEEAIELATSGDNTKVDKLVRDIYG----GSYERFLGMFSFGHMNSKE   77 (182)
Q Consensus         6 ~~~~rvgGs---~iGGGT~~GL~~LL-tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg----~~~~~lgiASsFGK~~~~~   77 (182)
                      ++|+.+|-|   ++|. .|=-.+|+| ++.--=-+|-++|++|+..++.+--.=+-+    -+++.+-||.- =.+...+
T Consensus       147 g~y~ilGeTlDdA~Ge-a~DKvAR~lGL~yPGGp~Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~-~~~~~~~  224 (342)
T COG0533         147 GRYEVLGETLDDAAGE-AFDKVARLLGLGYPGGPAIEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVL-RLLKKLK  224 (342)
T ss_pred             CcEEEEeeechhhhhH-HHHHHHHHhCCCCCCcHHHHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHH-HHHHhcc
Confidence            667766666   3443 333444444 122222289999999997655443110011    11111112211 0011101


Q ss_pred             cccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          78 KRES---VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        78 ~~~~---~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      ++++   ..++|||+|+...+...+.+..-.+.+.++.++++..|.- .-|..+.+.++....   ...++.+|+.
T Consensus       225 ~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGV-aaN~~LR~~l~~~~~---~~g~~~~~p~  296 (342)
T COG0533         225 QKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGV-AANSRLREMLEEMCK---ERGAEVYIPP  296 (342)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccH-HHhHHHHHHHHHHHH---hcCCEEEcCC
Confidence            0122   3466699999999999999999999999999999999996 556666676665444   3356655544

>TIGR01312 XylB D-xylulose kinase

Probab=91.87  E-value=5.6  Score=36.23  Aligned_cols=122  Identities=18%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcce-eccccCCCCCCcc---cccccccccccccccC
Q psy6720           6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKL-VRDIYGGSYERFL---GMFSFGHMNSKEKRES   81 (182)
Q Consensus         6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDll-V~DIyg~~~~~lg---iASsFGK~~~~~~~~~   81 (182)
                      +.|.-.+++.-||..+-=+.+.+ +..+++++.+++++-....-.++ +-...|...|...   -++-+| +     ..+
T Consensus       286 ~~~~~~~~~~~~g~~~~w~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~g-l-----~~~  358 (481)
T TIGR01312       286 GGWLPMGVTLSATSSLEWFRELF-GKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIG-L-----THN  358 (481)
T ss_pred             CceEEEeEehhhHHHHHHHHHHh-CCCcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEEC-C-----CCC
Confidence            44544455555555554455544 43578888888875543322333 3334444433221   223233 2     235


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      .++++++++++.-|++++-++.-..-+.  ..+++|+.+|.. ..++..++.++.+
T Consensus       359 ~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~-s~s~~~~Q~~Adv  413 (481)
T TIGR01312       359 TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGG-AKSPAWRQMLADI  413 (481)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccc-cCCHHHHHHHHHH
Confidence            6899999999999999998877655443  346899999997 6778888998855

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family

Probab=91.51  E-value=0.96  Score=39.72  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEe
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFL  149 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl  149 (182)
                      .+++|+|+++...+.+.+..++..+.+.+++++|+++|....|.-.. +.+..   .....+++.++.
T Consensus       229 ~~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~-~~l~~---~~~~~g~~v~~~  292 (305)
T TIGR00329       229 ATKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLR-EMLET---LCQELNVEFYYP  292 (305)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHH-HHHHH---HHHHCCCEEECC
Confidence            45799999999999999999999999999999999999986655444 44442   333346666553

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=91.47  E-value=1  Score=40.87  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      .++|||+|+...|...+.+....+.+.+++++++++|-. ..|..+.+.++...   .+.+++.+|+.
T Consensus       235 ~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGV-AaN~~LR~~l~~~~---~~~~~~~~~p~  298 (345)
T PTZ00340        235 FTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGV-GCNLRLQEMMQQMA---KERGGKLFAMD  298 (345)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCH-HHHHHHHHHHHHHH---HHcCCEEEeCC
Confidence            478999999999999999999999999999999999996 55666777777433   34578876654

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=1.4  Score=43.78  Aligned_cols=67  Identities=24%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720          81 SVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH  151 (182)
Q Consensus        81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h  151 (182)
                      ...++++|...-+.+++-++.++...|+..|+++|+++|..+.|..++ +.+.   ++..+.+.+.+|.++
T Consensus       663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~l~-~~~~---~~l~~~~f~~~~~~~  729 (750)
T COG0068         663 KDEPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRLLL-ERLA---KYLKKEGFRFLFHQE  729 (750)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHHHH-HHHH---HHHHhcCceEeeecc
Confidence            478899999999999999999999999999999999999987766655 4444   577777888777554

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=89.86  E-value=10  Score=35.24  Aligned_cols=121  Identities=16%  Similarity=0.041  Sum_probs=74.8

Q ss_pred             CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcce-eccccCCCCCCcc---cccccccccccccccCC
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKL-VRDIYGGSYERFL---GMFSFGHMNSKEKRESV   82 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDll-V~DIyg~~~~~lg---iASsFGK~~~~~~~~~~   82 (182)
                      .|.-.+++..||..+-=+.+.+.-..+++++.++|++-. ..-.++ +-...|...|...   -++-+|-      +...
T Consensus       303 ~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl------~~~~  375 (504)
T PTZ00294        303 VYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK-DTGGVVFVPAFSGLFAPYWRPDARGTIVGM------TLKT  375 (504)
T ss_pred             EEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCCCEEEeCcccCCCCCCCCCCCCEEEEcc------CCCC
Confidence            344455566666666555555532346888888886543 222333 3333443333221   3333342      2245


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEEcccccccHHHHHHHHHH
Q psy6720          83 SREDLARATLVTITNNIGSIARMSAINEN--INKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~--i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      +++|++++++.-|++.+-+.--...+..|  +++|+.+|.. ..++..+++++.+
T Consensus       376 ~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~-a~s~~w~Qi~Adv  429 (504)
T PTZ00294        376 TRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGL-TKNKLLMQFQADI  429 (504)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEeccc-ccCHHHHHHHHHH
Confidence            89999999999999998776655544324  7899999987 5678888998854

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=88.59  E-value=2.2  Score=42.17  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      .+++|||+++...+...+..++-.+++.+++++|+++|.... |..+.+.+..   ...+.+++.+|.+
T Consensus       629 ~~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfq-N~~L~~~L~~---~L~~~g~~v~~p~  693 (711)
T TIGR00143       629 EDRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFY-NRLLLERLAK---YLKGLGFQFLFHR  693 (711)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHH-HHHHHHHHHH---HHHhCCCEEEccC
Confidence            578999999999999999999999999999999999999755 4555555553   3344567776644

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>PRK15027 xylulokinase; Provisional

Probab=87.75  E-value=16  Score=33.77  Aligned_cols=122  Identities=15%  Similarity=0.070  Sum_probs=73.8

Q ss_pred             CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccC
Q psy6720           6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRES   81 (182)
Q Consensus         6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~   81 (182)
                      +.|.-.+++.-+|..+- -.+-..+..+++++.++|++-....-. +.+-.+.|...|...   .++-||-      ...
T Consensus       283 ~~~~~~~~~~~~g~~~~-W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl------~~~  355 (484)
T PRK15027        283 QRWHLMSVMLSAASCLD-WAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGL------THQ  355 (484)
T ss_pred             CceEEEEEehhhHHHHH-HHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECC------CCC
Confidence            33443444444444433 333334556688888888653322212 344555555433221   4445542      234


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      .+++|++++++.=|++++-+.--..-+ ...+++|+++|.- ..++..+++++.+
T Consensus       356 ~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv  409 (484)
T PRK15027        356 HGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGG-ARSEYWRQMLADI  409 (484)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcc-cCCHHHHHHHHHH
Confidence            689999999999999988776644432 2236799999995 7788888998844

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=87.38  E-value=18  Score=33.63  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCccee-ccccCCCCCCcc---cccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6720          31 CNSFEEAIELATSGDNTKVDKLV-RDIYGGSYERFL---GMFSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMS  106 (182)
Q Consensus        31 ~~~f~ei~~lA~~Gd~~~vDllV-~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~eDia~SLl~Mv~~nIg~la~l~  106 (182)
                      ..+++++.++|++-....-.+++ --+.|...|...   -++-|| +.     ..-+++|++++++.=|++.+-+.--..
T Consensus       321 ~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~G-l~-----~~~~~~~l~rAvlEgia~~~~~~~~~~  394 (505)
T TIGR01314       321 IDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFG-LT-----YSHKKEHMIRAALEGVIYNLYTVALAL  394 (505)
T ss_pred             CCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEEC-CC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688888888654432223333 333344333221   334444 21     235799999999999999887764444


Q ss_pred             HHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720         107 AIN--ENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus       107 A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      .+.  ..+++|+.+|.- ..++..+++++.+
T Consensus       395 ~~~~g~~~~~i~~~GGg-a~s~~w~Qi~Adv  424 (505)
T TIGR01314       395 VEVMGDPLNMIQATGGF-ASSEVWRQMMSDI  424 (505)
T ss_pred             HHhcCCCCcEEEEecCc-ccCHHHHHHHHHH
Confidence            332  347899999996 5678888998854

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=86.89  E-value=3.1  Score=38.90  Aligned_cols=64  Identities=13%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      +.+|+|+++...+.+.+..++..+.+.+++++|+++|-...| ..+.+.+..   ...+..++.+|.+
T Consensus       217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N-~~l~~~l~~---~~~~~~~~v~~~~  280 (535)
T PRK09605        217 PLEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAAN-NRLREMLKE---MCEERGADFYVPE  280 (535)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHH-HHHHHHHHH---HHHHCCCEEECCC
Confidence            568999999999999999999999999999999999997554 445555552   3334566665544

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=86.16  E-value=16  Score=34.11  Aligned_cols=146  Identities=18%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCC--CCCCcceeccccCC-CCCCcc-c--cccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGD--NTKVDKLVRDIYGG-SYERFL-G--MFSFGHMNSKEK   78 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd--~~~vDllV~DIyg~-~~~~lg-i--ASsFGK~~~~~~   78 (182)
                      ++.+.+.+++..||..+..+.+..-...++.++...+..=.  ....+++...-..+ ..+... -  +..+|.      
T Consensus       293 ~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~------  366 (502)
T COG1070         293 PGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGL------  366 (502)
T ss_pred             CCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEcc------
Confidence            45567888999999999999888766556666666554333  22234443332222 212111 1  122221      


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec--CCch
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAI--NENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE--HEVC  154 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~--~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~--h~gy  154 (182)
                      ....++++++++++.-++.++-..--...+  ....++|+++|.. ..++..+++++.+   .   +....-++  ..+.
T Consensus       367 ~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg-ars~~w~Qi~Ad~---~---g~~v~~~~~~e~~a  439 (502)
T COG1070         367 TLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG-ARSPLWLQILADA---L---GLPVVVPEVEEAGA  439 (502)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc-ccCHHHHHHHHHH---c---CCeeEecCcccchH
Confidence            234689999999999999999874333333  5677899999998 5568888998854   2   34433332  3444


Q ss_pred             hhhhhHHhh
Q psy6720         155 IIGIFDHWT  163 (182)
Q Consensus       155 l~ga~~a~~  163 (182)
                      +.||..+..
T Consensus       440 ~g~A~~~~~  448 (502)
T COG1070         440 LGGAALAAA  448 (502)
T ss_pred             HHHHHHHHH
Confidence            555554433

>TIGR01311 glycerol_kin glycerol kinase

Probab=83.42  E-value=27  Score=32.29  Aligned_cols=117  Identities=19%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             ecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccCCCHHH
Q psy6720          11 VLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSRED   86 (182)
Q Consensus        11 vgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~eD   86 (182)
                      -+++..||+.+-=+-..+....+++++.++|++=. ..-. +.+-.+.|...|...   -++-+| +     ....+++|
T Consensus       300 ~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~g~~~~P~l~G~r~P~~~~~arg~~~G-l-----~~~~~~~~  372 (493)
T TIGR01311       300 EGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DNGGVYFVPAFTGLGAPYWDPDARGAIFG-L-----TRGTTKAH  372 (493)
T ss_pred             EeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CCCCEEEeCcccCCCCCcCCCCCcEEEEC-c-----CCCCCHHH
Confidence            34455555554333333432356778888775422 1112 334455555433322   334444 2     23458999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          87 LARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        87 ia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      ++++++.=|++++-+..-..-+.  ..+++|..+|.. ..++..+++++.+
T Consensus       373 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGg-a~s~~w~Qi~ADv  422 (493)
T TIGR01311       373 IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGM-TNNNLLMQFQADI  422 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeccc-ccCHHHHHHHHHh
Confidence            99999999999988877666543  347899999996 6788899999954

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
3mk6_A	376	Substrate And Inhibitor Binding To Pank Length = 37		2e-48
3sms_A	382	Human Pantothenate Kinase 3 In Complex With A Panto		2e-48
2i7p_A	362	Crystal Structure Of Human Pank3 In Complex With Ac		2e-48
2i7n_A	360	Crystal Structure Of Human Pank1 Alpha: The Catalyt		4e-48
3smp_A	386	Monoclinic Crystal Structure Of Human Pantothenate		5e-48

>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank Length = 376

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 7/126 (5%)
Query: 33  SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
           SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct: 238 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 296
Query: 87  LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
           LARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct: 297 LARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 356
Query: 147 LFLEHE 152
           LFLEHE
Sbjct: 357 LFLEHE 362

>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate Analog Length = 382

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 7/126 (5%)
Query: 33  SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
           SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct: 240 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 298
Query: 87  LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
           LARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct: 299 LARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 358
Query: 147 LFLEHE 152
           LFLEHE
Sbjct: 359 LFLEHE 364

>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa Length = 362

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 7/126 (5%)
Query: 33  SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
           SFEEA+E+A+ GD+T+ DKLVRDIYGG YERF G+       SFG+M  KEKRESVS+ED
Sbjct: 224 SFEEALEMASKGDSTQADKLVRDIYGGDYERF-GLPGWAVASSFGNMIYKEKRESVSKED 282
Query: 87  LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
           LARATLVTITNNIGS+ARM A+NE IN+VVFVGNFLRVN +SMKLLAYA+DYWSKG  KA
Sbjct: 283 LARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 342
Query: 147 LFLEHE 152
           LFLEHE
Sbjct: 343 LFLEHE 348

>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core Domain In Complex With Accoa Length = 360

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 109/126 (86%), Gaps = 7/126 (5%)
Query: 33  SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
           +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+       SFG+M SKEKR+S+S+ED
Sbjct: 222 TFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVASSFGNMMSKEKRDSISKED 280
Query: 87  LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
           LARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +SMKLLAYAMD+WSKG  KA
Sbjct: 281 LARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKA 340
Query: 147 LFLEHE 152
           LFLEHE
Sbjct: 341 LFLEHE 346

>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase 1 Alpha Length = 386

Iteration: 1
 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 109/126 (86%), Gaps = 7/126 (5%)
Query: 33  SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------FSFGHMNSKEKRESVSRED 86
           +FEEA+E+A  GD+T VDKLV+DIYGG YERF G+       SFG+M SKEKR+S+S+ED
Sbjct: 244 TFEEALEMAAKGDSTNVDKLVKDIYGGDYERF-GLQGSAVASSFGNMMSKEKRDSISKED 302
Query: 87  LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKA 146
           LARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +SMKLLAYAMD+WSKG  KA
Sbjct: 303 LARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKA 362
Query: 147 LFLEHE 152
           LFLEHE
Sbjct: 363 LFLEHE 368

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	1e-50
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	1e-36

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Length = 360

 Score =  165 bits (419), Expect = 1e-50
 Identities = 110/144 (76%), Positives = 125/144 (86%), Gaps = 5/144 (3%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERF-----LGMF 68
           TSLGGGTFLGLCCLLTGC +FEEA+E+A  GD+T VDKLV+DIYGG YERF         
Sbjct: 203 TSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVAS 262

Query: 69  SFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPIS 128
           SFG+M SKEKR+S+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +S
Sbjct: 263 SFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVS 322

Query: 129 MKLLAYAMDYWSKGTQKALFLEHE 152
           MKLLAYAMD+WSKG  KALFLEHE
Sbjct: 323 MKLLAYAMDFWSKGQLKALFLEHE 346

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Length = 287

 Score =  127 bits (320), Expect = 1e-36
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMF---SF 70
              GGG   GL  LL+    +++  ++A  GD   +D  VR IY  +     G     +F
Sbjct: 137 IGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANF 196

Query: 71  GHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMK 130
           GH+      +  +  +   A +  +   + ++A   A       +V++G+    N +  K
Sbjct: 197 GHVLHHLDAD-FTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRK 255

Query: 131 LLAYAMDYWSKGTQKALFLEHE 152
           ++    DY      K  ++E+ 
Sbjct: 256 VVE---DYTVLRGCKPYYVENG 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	100.0
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	100.0
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.81
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	97.76
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	94.53
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	94.02
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	93.97
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	93.73
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	93.58
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	93.53
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	93.15
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	92.61
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	92.59
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	92.43
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	92.31
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	92.06
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	92.06
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	91.21
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	90.43
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	89.07
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	89.06
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	88.81
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	88.62
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	88.47
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	88.16
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	81.78
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	81.55
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	81.37
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	80.38

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=100.00  E-value=3e-49  Score=352.32  Aligned_cols=159  Identities=70%  Similarity=1.063  Sum_probs=151.1

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----cccccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEKR   79 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~~   79 (182)
                      +++|+||+||++||||||||++|||++.||||+++||++||+++|||+|+||||++|+++|     +||||||+....++
T Consensus       194 ~~~f~rvgG~siGGGTflGL~~lLtg~~~~dEl~~lA~~Gd~~~vDllV~DIYg~~y~~~gL~~~~~ASsFGk~~~~~~~  273 (360)
T 2i7n_A          194 KDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKR  273 (360)
T ss_dssp             TTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHH
T ss_pred             CCCEEEeccccCccHhHHHHHHHHhCCCCHHHHHHHHHcCCCCcccceeeecccCcccccCCCccceeehhhhHhhHhhh
Confidence            5699999999999999999999999999999999999999999999999999999999776     99999999765545


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhh
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIF  159 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~  159 (182)
                      +.+++||||+||+.||+++|+|+|+|+|+.+++++|||+|+|+++||.+|++|+++++|||+++++++|++|++|+ ||+
T Consensus       274 ~~~~~eDIa~gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~-GAl  352 (360)
T 2i7n_A          274 DSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF-GAV  352 (360)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCH-HHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHH-HHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999 888


Q ss_pred             HHhhc
Q psy6720         160 DHWTS  164 (182)
Q Consensus       160 ~a~~~  164 (182)
                      ||...
T Consensus       353 GAaL~  357 (360)
T 2i7n_A          353 GALLE  357 (360)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=100.00  E-value=7.9e-40  Score=283.64  Aligned_cols=158  Identities=20%  Similarity=0.277  Sum_probs=140.9

Q ss_pred             CcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---ccccccccccccc
Q psy6720           2 KIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEK   78 (182)
Q Consensus         2 ~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~   78 (182)
                      +|.+++|+|++||++||||||||+++|+++.|++|+.+||++||++++||+|+|||+++++++.   +||+|||+.. ..
T Consensus       125 ~v~~~~f~r~~g~aaGgGtFl~l~a~ll~~~~~~el~~lA~~g~~~~vDl~v~DIy~~~~~~l~~~s~as~Fgk~~~-l~  203 (287)
T 2ews_A          125 YFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLH-HL  203 (287)
T ss_dssp             EECSSCEEEEEEESCSHHHHHHHHHHHHCCCCHHHHHHHHTTCCCTTTCEETTTC-------CCTTSEEETTTTGGG-CT
T ss_pred             EEcCCceEEcCccccchhhHHHHHHHHhCCCCHHHHHHHHHcCCccccccchhhhcCCCCCCcCcchhhHHHHHHHH-HH
Confidence            4567799999999999999999999999999999999999999999999999999999888775   9999999764 23


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhh
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGI  158 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga  158 (182)
                      .+.+++||||+||+.||+++|+++|+++|+.+++++|+|+|.+++.||.++++++   ++|+..+.+++|++|++|+ ||
T Consensus       204 ~~g~~~eDIaasl~~sV~~~I~~la~~~a~~~~i~~Vvf~Gg~l~~n~~l~~~l~---~~~~~~~~~~~~p~~~~~~-gA  279 (287)
T 2ews_A          204 DADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVE---DYTVLRGCKPYYVENGAFS-GA  279 (287)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHH---HHHHHTTCEEEECTTGGGH-HH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchhcCHHHHHHHH---HHHhhCCceEEECCCccHH-HH
Confidence            5689999999999999999999999999999999999999999999999999999   7899999999999999999 88


Q ss_pred             hHHhhc
Q psy6720         159 FDHWTS  164 (182)
Q Consensus       159 ~~a~~~  164 (182)
                      +||...
T Consensus       280 lGAaL~  285 (287)
T 2ews_A          280 IGALYL  285 (287)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            887654

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.81  E-value=0.00022  Score=58.83  Aligned_cols=130  Identities=17%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             CCCce--Eeccc-ccchhhHH-HHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccc
Q psy6720           5 NLSPL--CVLLT-SLGGGTFL-GLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKR   79 (182)
Q Consensus         5 ~~~~~--rvgGs-~iGGGT~~-GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~   79 (182)
                      ++.++  ..+++ ..|+|-+. =++++| + .++++.-+++++.+.. .+     |.       ....+|.|.... ...
T Consensus       113 ~g~~~~~~~~~~~~~g~G~f~d~~a~~l-~-~~~~~~~~~~~~a~~~-~~-----i~-------~~~~~f~~s~~~~~~~  177 (276)
T 4ehu_A          113 NGRLLNFLMNDKCAAGTGRFLDVMAKII-E-VDVSELGSISMNSQNE-VS-----IS-------STCTVFAESEVISHLS  177 (276)
T ss_dssp             TSCEEEEEEECSCSTTSHHHHHHHHHHH-T-CCGGGHHHHHTTCSSC-CC-----CC-------CCSHHHHHHHHHHHHH
T ss_pred             cCceEEEEeCCCcCcchhhHHHHHHHHh-c-cChhhhHHHHhcCCCC-CC-----cC-------CccchhhhhHHHHhhh
Confidence            34444  44555 56777666 455555 4 3677888888777531 11     11       134566553211 113


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhh
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIF  159 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~  159 (182)
                      +..++|||++++..+|..++...   ..+..++++|+++|.. ..||.+.+.++   ++.   +.++++++|.++. +|+
T Consensus       178 ~~~~~~di~a~~~~~v~~~l~~~---~~~~~~~~~vvl~GGv-a~n~~lr~~l~---~~~---g~~~~~p~~p~~~-~A~  246 (276)
T 4ehu_A          178 ENAKIEDIVAGIHTSVAKRVSSL---VKRIGVQRNVVMVGGV-ARNSGIVRAMA---REI---NTEIIVPDIPQLT-GAL  246 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHH---HHHHCCCSSEEEESGG-GGCHHHHHHHH---HHH---TSCEECCSSGGGH-HHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHH---HHhcccCCeEEEecCc-cchHHHHHHHH---HHH---CCCeeeCCCcchH-HHH
Confidence            46789999999999999887654   5678899999999996 66788888887   444   6788999999998 454


Q ss_pred             H
Q psy6720         160 D  160 (182)
Q Consensus       160 ~  160 (182)
                      |
T Consensus       247 G  247 (276)
T 4ehu_A          247 G  247 (276)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=97.76  E-value=0.00015  Score=60.73  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             hhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-cccccccccccc-cccCCCHHHHHHHHHHHH
Q psy6720          18 GGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-GMFSFGHMNSKE-KRESVSREDLARATLVTI   95 (182)
Q Consensus        18 GGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-iASsFGK~~~~~-~~~~~~~eDia~SLl~Mv   95 (182)
                      |.++.-++++| +. +++|+.++|.++..             +|+ ++ ....|.+-.... .....+++|++++++..|
T Consensus       132 G~~le~~a~~l-g~-~~~el~~la~~~~~-------------p~~-~~~~c~vfa~s~v~~l~~~g~~~~di~~av~e~V  195 (270)
T 1hux_A          132 GRFLDVMANIL-EV-KVSDLAELGAKSTK-------------RVA-ISSTCTVFAESEVISQLSKGTDKIDIIAGIHRSV  195 (270)
T ss_dssp             HHHHHHHHHHH-TC-CTTTHHHHHTTCCS-------------CCC-CCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CC-CHHHHHHHHhhCCC-------------CCC-cccccchhHhHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            44788888877 65 79999999988741             111 22 334554422110 124578899999999999


Q ss_pred             HHHHHHHHHHHHHHhCC-CEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchh
Q psy6720          96 TNNIGSIARMSAINENI-NKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCI  155 (182)
Q Consensus        96 ~~nIg~la~l~A~~~~i-~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl  155 (182)
                      ++++..+    ++..++ ++|+++|.. ..+|..++.++   +..   +.+..++++..+.
T Consensus       196 a~~i~~~----~~~~~~~~~i~~~GG~-a~n~~~~~~~~---~~l---g~~v~~p~~~~~~  245 (270)
T 1hux_A          196 ASRVIGL----ANRVGIVKDVVMTGGV-AQNYGVRGALE---EGL---GVEIKTSPLAQYN  245 (270)
T ss_dssp             HHHHHHH----HHTTCCCSSEEEESGG-GGCHHHHHHHH---HHH---CSCEECCGGGGGH
T ss_pred             HHHHHHH----HhcCCCCCeEEEeCcc-ccCHHHHHHHH---HHH---CCCeEeCCCcchH
Confidence            9998433    334464 789999995 67888888888   444   4567788888886

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=94.53  E-value=0.54  Score=42.11  Aligned_cols=121  Identities=16%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCC
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVS   83 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~   83 (182)
                      .|--.+++..||.++-=|.+ +...++++++.++|++-...+-=+.+-+..|...|...   .++-+|-      ....+
T Consensus       304 ~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl------~~~~~  376 (503)
T 2w40_A          304 KYALEGSIGTAGSGVSWLLK-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGM------TFNTE  376 (503)
T ss_dssp             EEEEEEEESCSHHHHHHHHH-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBTTCCEEEEEE------CTTCC
T ss_pred             eEEEechhhhhHhHHHHHHH-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCCCcEEEECC------CCCCC
Confidence            57777777888887766666 43345788888888653311111344455554333211   3333442      23568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC--C-CEEEEEcccccccHHHHHHHHHH
Q psy6720          84 REDLARATLVTITNNIGSIARMSAINEN--I-NKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        84 ~eDia~SLl~Mv~~nIg~la~l~A~~~~--i-~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      ++|++++++.-|+..+-++.-...+..+  + ++|+++|.. ..|+..+++++.+
T Consensus       377 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~i~~~GG~-a~s~~~~Q~~Adv  430 (503)
T 2w40_A          377 RSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGM-TKNKPFMQFNSDI  430 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGG-GGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeCcc-ccCHHHHHHHHHH
Confidence            9999999999999998887666554334  6 889999997 6788888999844

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=94.02  E-value=0.68  Score=41.64  Aligned_cols=132  Identities=16%  Similarity=0.057  Sum_probs=84.4

Q ss_pred             ceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCCH
Q psy6720           8 PLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSR   84 (182)
Q Consensus         8 ~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~   84 (182)
                      |---|++..+|..+.=+.+.+....+++++.++|++=...+-=+.+-...|...|-..   -++-+|-      ....++
T Consensus       301 ~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl------~~~~~~  374 (506)
T 3h3n_X          301 YALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGL------TRGTTK  374 (506)
T ss_dssp             EEEEEEECCSSHHHHHHHHTSCCCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBTTCCCEEECC------CTTCCH
T ss_pred             EEEecchhhHHHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCCCCCEEEEcc------CCCCCH
Confidence            4444556677776655555554456899999999764332212344445554433221   3333441      124689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCC
Q psy6720          85 EDLARATLVTITNNIGSIARMSAINE--NINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHE  152 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~~--~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~  152 (182)
                      +|++|+++.-|++.+-+.--...+..  .+++|+.+|.. ..|+..+++++.+   .   ++...-++..
T Consensus       375 ~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv---~---g~pV~~~~~~  437 (506)
T 3h3n_X          375 EDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGA-AKNDLLMQFQADI---L---DIDVQRAANL  437 (506)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCEEEEESGG-GGCHHHHHHHHHH---H---TSEEEECSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeccc-ccCHHHHHHHHHH---h---CCeEEecCCC
Confidence            99999999999999988765555443  57899999996 6788889998844   4   4554445543

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=93.97  E-value=0.67  Score=41.56  Aligned_cols=133  Identities=17%  Similarity=0.049  Sum_probs=83.4

Q ss_pred             ceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCCH
Q psy6720           8 PLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSR   84 (182)
Q Consensus         8 ~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~   84 (182)
                      |-.-|++..+|..+.=+.+.+....+++++.++|++=...+-=+.+-...|...|-..   -++-+|-      ....++
T Consensus       302 ~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl------~~~~~~  375 (501)
T 3g25_A          302 YALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGL------TRGTEK  375 (501)
T ss_dssp             EEEEEEESCSTHHHHHHHHTSCCCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBTTCCEEEEEE------CTTCCH
T ss_pred             EEEecccccHHHHHHHHHHHcCCCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCCCCCEEEEcc------CCCCCH
Confidence            4444556667766544445554456899999999654332212334444554433221   3333342      124689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCc
Q psy6720          85 EDLARATLVTITNNIGSIARMSAINE--NINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEV  153 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~~--~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~g  153 (182)
                      +|++|+++.-|++.+-+.--...+..  .+++|+.+|.. ..|+..+++++.   -.   ++...-++...
T Consensus       376 ~~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~-aks~~~~Qi~Ad---v~---g~pV~~~~~~e  439 (501)
T 3g25_A          376 EHFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGA-VKNNFIMQFQAD---IV---NTSVERPEIQE  439 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGG-GGCHHHHHHHHH---HH---TSEEEEESCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecch-hcCHHHHHHHHH---Hh---CCceEecCCCc
Confidence            99999999999999888766555543  57899999996 678888999884   44   45544455433

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=93.73  E-value=0.73  Score=41.33  Aligned_cols=121  Identities=15%  Similarity=0.042  Sum_probs=78.2

Q ss_pred             CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccCC
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRESV   82 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~   82 (182)
                      .|-.-|++..||.++-=|...+....+++++.++|++=...+ . +.+-+..|...|...   .++-+|-      ....
T Consensus       300 ~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~-gl~~~P~~~G~r~P~~d~~arg~~~Gl------~~~~  372 (504)
T 2d4w_A          300 VYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNG-GAYFVPAFSGLFAPYWRPDARGALVGL------TRYV  372 (504)
T ss_dssp             EEEEEEEESCSHHHHHHHHHTTCTTTTCSCTHHHHTTSSSCT-TCEEECTTCCCSTTTCCCCSCEEEEEE------CSSC
T ss_pred             eEEEcchhhhHHHHHHHHHHHhCCCCCHHHHHHHHhhCCCCC-CEEEecCCCCCCCCCCCCCCCEEEEeC------CCCC
Confidence            566677777777776545444433456778888886532111 1 344555554433211   3333442      2346


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcccccccHHHHHHHHHH
Q psy6720          83 SREDLARATLVTITNNIGSIARMSAINE--NINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~--~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      +++|++++++.-|+..+-+.--...+..  .+++|+.+|.. ..|+..|++++.+
T Consensus       373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~-a~s~~~~Qi~Adv  426 (504)
T 2d4w_A          373 NRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGM-VANELLMQFQADQ  426 (504)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESGG-GGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCc-ccCHHHHHHHHHH
Confidence            8999999999999999887766554433  47899999997 6788888998844

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=93.53  E-value=1.1  Score=40.12  Aligned_cols=133  Identities=20%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccCC
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRESV   82 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~   82 (182)
                      .|-..+++..||.++-=+...+....+++++.++|++=...+ . +.+-+..|...|...   .++-+|-      ....
T Consensus       292 ~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~a~~~~~~~-gl~~~P~~~G~r~P~~d~~arg~~~Gl------~~~~  364 (497)
T 2zf5_O          292 SYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNE-GVYFVPAFVGLGAPYWDQFARGIIIGI------TRGT  364 (497)
T ss_dssp             EEEEEEEESCSHHHHHHHHHTSCCCSCGGGHHHHHTTSSSCT-TCEEECCTTCBCTTTCBTTCCEEEEEE------CTTC
T ss_pred             EEEEechhhhHHHHHHHHHHHhCCCCcHHHHHHHHhhCCCCC-ceEEecCcCCCCCCCCCCCCCEEEEeC------CCCC
Confidence            455666777777776544444433457888888886432111 2 344455554333211   3333342      2356


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCc
Q psy6720          83 SREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEV  153 (182)
Q Consensus        83 ~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~g  153 (182)
                      +++|++++++.-|+..+-++--...+.-.+++|+.+|.. ..|+..++.++.   -.   ++...-+++..
T Consensus       365 ~~~~l~rAvlEgia~~~~~~l~~l~~~~~~~~i~~~GG~-a~s~~~~Qi~Ad---v~---g~pV~~~~~~e  428 (497)
T 2zf5_O          365 GREHLARATLEAIAYLTRDVVDEMEKLVQIKELRVDGGA-TANDFLMQFQAD---IL---NRKVIRPVVKE  428 (497)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCEEEESGG-GGCHHHHHHHHH---HH---TSCEEEESCSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEeCcc-ccCHHHHHHHHh---hc---CCeEEEcCCCc
Confidence            899999999999988876554333211157899999997 678888899884   44   45544555544

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=93.15  E-value=0.61  Score=39.79  Aligned_cols=133  Identities=17%  Similarity=0.106  Sum_probs=79.7

Q ss_pred             CCCCceEecccc-cchhhHHHHHHhhcCCCC--HHHHHHHHhcCCCC-CCcceeccccCCCCCCccccccccccccc---
Q psy6720           4 PNLSPLCVLLTS-LGGGTFLGLCCLLTGCNS--FEEAIELATSGDNT-KVDKLVRDIYGGSYERFLGMFSFGHMNSK---   76 (182)
Q Consensus         4 ~~~~~~rvgGs~-iGGGT~~GL~~LLtg~~~--f~ei~~lA~~Gd~~-~vDllV~DIyg~~~~~lgiASsFGK~~~~---   76 (182)
                      ..++++.+|.|. .+-|=++--...++|...  --++.++|.+|+.. .....+++   ..       -+|..+.+.   
T Consensus       139 ~~~~~~~lg~t~dds~Gr~fD~vA~~LGl~~~~~~~le~lA~~g~~~~~~p~~i~~---~~-------fsfs~l~~~v~~  208 (330)
T 2ivn_A          139 EGGRYRVFGETLDIGIGNAIDVFARELGLGFPGGPKVEKLAEKGEKYIELPYAVKG---MD-------LSFSGLLTEAIR  208 (330)
T ss_dssp             ETTEEEEEEEBSSSCHHHHHHHHHHHHTCCSCHHHHHHHHHHTCCSCCCCCCCEET---TE-------ECCHHHHHHHHH
T ss_pred             cCCeEEEEEeecCchhHHHHHHHHHHhCCCCCcHHHHHHHhhcCCCcCCCCcccCC---Ce-------EehHHHHHHHHH
Confidence            356788887653 222333333333335442  24788899988741 11122221   11       122211110   


Q ss_pred             -ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          77 -EKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        77 -~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                       -.+.+.+++|||+++...+.+.+..++...++.+++++|+++|.... |..+.+.+...+...   ..+.++++
T Consensus       209 ~~~~g~~~~~diAa~fq~~l~~~l~~~~~~~~~~~~~~~vvlsGGVa~-N~~l~~~l~~~l~~~---g~~v~~p~  279 (330)
T 2ivn_A          209 KYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTEKDEVVLVGGVAA-NNRLREMLRIMTEDR---GIKFFVPP  279 (330)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGG-CHHHHHHHHHHHHHH---TCEEECCC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHH-HHHHHHHHHHHHHHc---CCEEEecC
Confidence             00112578999999999999999999999999999999999999755 555556666443322   46665544

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=92.61  E-value=0.62  Score=44.92  Aligned_cols=66  Identities=18%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          81 SVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      ...++|||++....+...+..++..+++.+++++|+++|... .|..+.+.+.   +...+.+++.++++
T Consensus       663 g~~~~dIAasFq~ala~~L~~~~~~a~~~~g~~~VvLsGGVa-~N~~Lr~~L~---~~l~~~g~~v~~p~  728 (761)
T 3vth_A          663 GFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSF-QNRYLLRRLI---EKLSLSGFEVYSNS  728 (761)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGG-GSHHHHHHHH---HHHHHTTCEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHH-HHHHHHHHHH---HHHHhCCCEEEecC
Confidence            467899999999999999999999999999999999999975 4555656666   34455678887766

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=92.59  E-value=0.73  Score=39.65  Aligned_cols=139  Identities=12%  Similarity=0.016  Sum_probs=81.6

Q ss_pred             cCCCCceEeccc-ccchhhHHHHHHhhcCCCCH--HHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccccccc
Q psy6720           3 IPNLSPLCVLLT-SLGGGTFLGLCCLLTGCNSF--EEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEKR   79 (182)
Q Consensus         3 ~~~~~~~rvgGs-~iGGGT~~GL~~LLtg~~~f--~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~~   79 (182)
                      +..++|++++.| ...=|-++-=...++|..-+  -++..+|.+|+. .+++-.. +-+.+..--++-+.   +... ..
T Consensus       144 ~~~~~~~~lg~t~d~S~G~~fD~vA~~LGl~y~g~~~le~lA~~g~~-~~~~~~~-~~~~~~sfsgl~~~---v~~~-l~  217 (334)
T 3eno_A          144 HVNGRYRVLGETLDIGIGNMIDKFAREAGIPFPGGPEIEKLAMKGTK-LLDLPYS-VKGMDTAFSGILTA---ALQY-LK  217 (334)
T ss_dssp             ECSSBEEEEEEBSSCCHHHHHHHHHTTTTCCSCHHHHHHTTGGGCCS-CCCCCCC-EETTEECCHHHHHH---HHHH-HH
T ss_pred             EeCCEEEEeccCCCccHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCC-CCCCcee-ccCceEchHHHHHH---HHHH-HH
Confidence            345778888775 22233333333333355421  367788888874 2222100 00111100011000   0000 01


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH  151 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h  151 (182)
                      +...++|+|++....+.+.+..++...++.+++++|+++|-.. .|..+.+.+.....+.   +++.++++.
T Consensus       218 ~g~~~~diAasfq~~l~~~l~~~~~~a~~~~g~~~vvlsGGVa-~N~~L~~~L~~~l~~~---g~~v~~p~~  285 (334)
T 3eno_A          218 TGQAIEDISYSIQETAFAMLVEVLERALYVSGKDEILMAGGVA-LNRRLRDMVTNMAREA---GIRSYLTDR  285 (334)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESSGG-GCHHHHHHHHHHHHHH---TSEEECCCT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCHH-HHHHHHHHHHHHHHHc---CCEEEecCC
Confidence            2357999999999999999999999999999999999999974 5556666666554444   677666544

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=92.43  E-value=3.1  Score=37.55  Aligned_cols=123  Identities=17%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc--cccccccccccccccC
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL--GMFSFGHMNSKEKRES   81 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg--iASsFGK~~~~~~~~~   81 (182)
                      .+.|-..+++..||..+.=+.+.+ +. +++++.++|++=....-. +.+-...|...|..+  .++-+|--     ...
T Consensus       321 ~g~~~~~~~~~~gg~~l~w~~~~~-~~-~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~~~arg~~~Gl~-----~~~  393 (515)
T 3i8b_A          321 TGHYLPLACTINGSRILDAGRAAL-GV-DYDELAKLAFASKPGANGITLVPYFDGERTPNRPNATATFSGMT-----LAN  393 (515)
T ss_dssp             SSSEEEEEEESCSTHHHHHHHHHH-TC-CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTTBTTCCCEEESCC-----TTT
T ss_pred             CCCEEEeeecccHHHHHHHHHHHh-CC-CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCCCcCcceEEecCC-----CCC
Confidence            455677777888888876666655 43 799999999764332222 344455555444222  33333411     123


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      .+++|++|+++.-|+..+-++--...+ -..+++|+++|.. ..|+..+++++.+
T Consensus       394 ~~~~~l~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGg-aks~~~~Qi~ADv  447 (515)
T 3i8b_A          394 TTRENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGG-AKSEAIRTLAPSI  447 (515)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGG-GGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECch-hcCHHHHHHHHHH
Confidence            489999999999999988776543333 2346899999997 5789899998844

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=92.31  E-value=1  Score=40.21  Aligned_cols=121  Identities=17%  Similarity=0.042  Sum_probs=76.7

Q ss_pred             CceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCC
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVS   83 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~   83 (182)
                      .|.--|++..||.++-=|.+ +....+++++.++|++=...+-=+.+-+..|...|...   .++-+|-      ....+
T Consensus       296 ~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl------~~~~~  368 (495)
T 2dpn_A          296 TYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLLGL------TRGTS  368 (495)
T ss_dssp             EEEEEEEESCSHHHHHHHHH-TTSSSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTTCCEEEEEE------CTTCC
T ss_pred             EEEEechHHhHHHHHHHHHH-cCCccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCCCceEEEec------CCCCC
Confidence            45556677777777654555 43335678888888653211111344555554433221   3333442      23468


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          84 REDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        84 ~eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      ++|++++++.-|+..+-++.-...+.  ..+++|+++|.. ..|+..+++++.+
T Consensus       369 ~~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~-a~n~~~~q~~Adv  421 (495)
T 2dpn_A          369 RAHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGM-AQNRLFLKIQADL  421 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGG-GGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc-ccCHHHHHHHHHH
Confidence            99999999999999888776655443  346799999986 6788888998854

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=92.06  E-value=0.3  Score=47.05  Aligned_cols=94  Identities=12%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec----CCchhh
Q psy6720          81 SVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE----HEVCII  156 (182)
Q Consensus        81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~----h~gyl~  156 (182)
                      ...++|||++....+.+.+..++..+++.+++++|+++|....| ..+.+.+.   +.....+++.++++    ++|=+ 
T Consensus       675 ~~~~~dIAasfQ~al~~~L~~~~~~a~~~tg~~~VvLSGGVa~N-~~L~~~l~---~~L~~~G~~v~~p~~vP~nDgGi-  749 (772)
T 4g9i_A          675 GASPADIAYSAHLALARAFAHTAVERAREFGVKNVALSGGVAYN-ELITKMIR---KVVEANGLNFHVTTEVPRGDNGV-  749 (772)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCEESSTTCC-HHHHHHHH---HHGGGSSCCCCCCTTSCSSGGGH-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEEchHHHH-HHHHHHHH---HHHHHCCCEEEccCCCCCCcchH-
Confidence            45789999999999999999999999999999999999998554 45555555   45666778876654    34444 


Q ss_pred             hhhHHhhcCCCcccCCCCCCcccc
Q psy6720         157 GIFDHWTSHPAFIDSYKPGVDFIL  180 (182)
Q Consensus       157 ga~~a~~~~~~~~~~~~~~~~~~~  180 (182)
                      +++.||.. -.+...+....|.+|
T Consensus       750 ALGQA~iA-~~~L~~~l~~~Dl~l  772 (772)
T 4g9i_A          750 NVGQAFLG-GLYLEGYLTKEDLML  772 (772)
T ss_dssp             HHHHHHHH-HHHHHTSSCTTTTTC
T ss_pred             HHHHHHHH-HHHHhccCchhhhcC
Confidence            33333322 112556666677654

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=92.06  E-value=1.1  Score=40.24  Aligned_cols=121  Identities=14%  Similarity=0.071  Sum_probs=77.5

Q ss_pred             CceEecccccchhhHHHHHHhhc--CCCCHHHHHHHHhc---C-CCCCCcceeccccCCCCCCcc---cccccccccccc
Q psy6720           7 SPLCVLLTSLGGGTFLGLCCLLT--GCNSFEEAIELATS---G-DNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKE   77 (182)
Q Consensus         7 ~~~rvgGs~iGGGT~~GL~~LLt--g~~~f~ei~~lA~~---G-d~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~   77 (182)
                      .+--+|++..||.++-=+.+.+.  ...+++++.++|++   | +..+-=+.+-...|...|-..   -++-+|-     
T Consensus       296 ~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl-----  370 (511)
T 3hz6_A          296 KTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGV-----  370 (511)
T ss_dssp             EEEEEEEESSSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECC-----
T ss_pred             ceEEEeehhhHHHHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcC-----
Confidence            34445666777777655666665  45689999988864   3 101111344444454433221   3333441     


Q ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          78 KRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        78 ~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                       ....+++|++|+++.-|+..+-+.--...+-. +++|+.+|.. ..|+..+++++.+
T Consensus       371 -~~~~~~~~l~RAvlEgia~~~~~~~~~l~~g~-~~~i~~~GGg-a~s~~~~Qi~ADv  425 (511)
T 3hz6_A          371 -TGATTRAQILLAVLEGAALSLRWCAELLGMEK-VGLLKVVGGG-ARSEAWLRMIADN  425 (511)
T ss_dssp             -CTTCCHHHHHHHHHHHHHHHHHHHHHHHTGGG-CCEEEEESGG-GGCHHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCch-hcCHHHHHHHHHH
Confidence             13468999999999999998877654433333 8999999997 6788889998844

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=91.21  E-value=1.8  Score=39.17  Aligned_cols=121  Identities=17%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             ceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCCH
Q psy6720           8 PLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSR   84 (182)
Q Consensus         8 ~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~   84 (182)
                      |.--|++..+|..+.=+.+.+....+++++.++|++=.-.+-=+.+-...|...|-..   .++-+|--      ...++
T Consensus       321 ~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~------~~~~~  394 (520)
T 4e1j_A          321 YALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGMT------RNTGP  394 (520)
T ss_dssp             EEEEEEESCSHHHHHHHHHTTCCC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBTTCCCEEEEEC------TTCCH
T ss_pred             EEEcchHhhHHHHHHHHHHHcCCcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCCCCCEEEeccc------CCCCH
Confidence            4444556677776665666665456788998888653322212344555554433221   33444421      24689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----hCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          85 EDLARATLVTITNNIGSIARMSAIN----ENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~----~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      +|++|+++.-|++.+-++--...+.    -.+++|+.+|.. ..++..+++++.+
T Consensus       395 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~g~~~~i~~~GGg-aks~~~~Qi~ADv  448 (520)
T 4e1j_A          395 AEFARAALEAVCYQTRDLLEAMHKDWRRNGNDTVLRVDGGM-VASDWTMQRLSDL  448 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCEEEESGG-GGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcceEEEeCcc-ccCHHHHHHHHHH
Confidence            9999999999999888765444332    268899999997 6789999998843

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=90.43  E-value=8.9  Score=33.88  Aligned_cols=135  Identities=13%  Similarity=0.021  Sum_probs=81.5

Q ss_pred             CCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccccC
Q psy6720           6 LSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKRES   81 (182)
Q Consensus         6 ~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~~~   81 (182)
                      +.|--.+++..||.++.=+...+ +..+++++.+++.+-....=+ +.+....|...|...   .++-+|-      ...
T Consensus       283 g~~~~~~~~~~~G~~~~W~~~~~-~~~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl------~~~  355 (484)
T 2itm_A          283 QRWHLMSVMLSAASCLDWAAKLT-GLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGL------THQ  355 (484)
T ss_dssp             TCEEEEEEECCHHHHHHHHHHHT-TCCSHHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEEEEEEE------ETT
T ss_pred             CeeeeeehhhhHHHHHHHHHHhc-CcccHHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcC------CCC
Confidence            35655666666666664444443 666899998888653322222 344445554333211   3343441      235


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCch
Q psy6720          82 VSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVC  154 (182)
Q Consensus        82 ~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gy  154 (182)
                      .+++|++++++.-|+..+-++--...+ ...+++|+.+|.. ..|+..++.++.   -.   ++...-++++..
T Consensus       356 ~~~~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~-a~s~~~~Qi~Ad---v~---g~pV~~~~~~e~  422 (484)
T 2itm_A          356 HGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGG-ARSEYWRQMLAD---IS---GQQLDYRTGGDV  422 (484)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGG-GCCHHHHHHHHH---HH---CCCEEEESCTTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEecc-ccCHHHHHHHHH---Hh---CCeEEeCCCCCc
Confidence            689999999999999988765544332 2347899999998 578888899884   44   455556666554

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=89.07  E-value=9.5  Score=34.14  Aligned_cols=133  Identities=13%  Similarity=-0.035  Sum_probs=84.1

Q ss_pred             CCceEecccccchhhHHHHHHhhc--CCC-CHHHHHHHHhcCCCCCCcc-eeccccCCCCCCc---cccccccccccccc
Q psy6720           6 LSPLCVLLTSLGGGTFLGLCCLLT--GCN-SFEEAIELATSGDNTKVDK-LVRDIYGGSYERF---LGMFSFGHMNSKEK   78 (182)
Q Consensus         6 ~~~~rvgGs~iGGGT~~GL~~LLt--g~~-~f~ei~~lA~~Gd~~~vDl-lV~DIyg~~~~~l---giASsFGK~~~~~~   78 (182)
                      +.|--.+++.-||..+-=+.+.+.  +.+ +++++.++|++-....-++ .+-...|...|-.   ..++-+|-      
T Consensus       293 g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl------  366 (508)
T 3ifr_A          293 GLYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFASGTFTGL------  366 (508)
T ss_dssp             TCBCCEEEESSSHHHHHHHHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCCCEEESC------
T ss_pred             CceEEechhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcCEEEECC------
Confidence            466666777788877755655552  432 7999999997633322233 3444555543321   14444442      


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecC
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEH  151 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h  151 (182)
                      ....+++|++|+++.-|+..+-+.--...+ ...+++|+.+|.. ..|+..|++++.+   .   ++...-++.
T Consensus       367 ~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv---~---g~pV~~~~~  433 (508)
T 3ifr_A          367 SLSHTRGHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGG-TRSRVWMGIMADV---L---QRPVQLLAN  433 (508)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGG-GGCHHHHHHHHHH---H---TSCEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-ccCHHHHHHHHHH---h---CCeEEecCC
Confidence            124589999999999999988776544333 3457899999997 5688888998844   4   444445553

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=89.06  E-value=2.6  Score=39.46  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             CCCCceEeccc--ccchhhHHHHHHhhcCCCCHH--HHHHHHhcCCC--CCCccee-cc-ccCC-----------CCCCc
Q psy6720           4 PNLSPLCVLLT--SLGGGTFLGLCCLLTGCNSFE--EAIELATSGDN--TKVDKLV-RD-IYGG-----------SYERF   64 (182)
Q Consensus         4 ~~~~~~rvgGs--~iGGGT~~GL~~LLtg~~~f~--ei~~lA~~Gd~--~~vDllV-~D-Iyg~-----------~~~~l   64 (182)
                      .++++++++-+  .=.=|-+..-...++|....+  .++.||..|+.  .-.|.+. .| -|.-           +|.++
T Consensus       157 ~~~~l~~l~~~~~p~SLG~~Y~~vT~~LGF~~~gE~KVMGLApYG~p~~~~~~~l~~~dg~f~~~~~~~~~~~~~~~~~f  236 (576)
T 3ven_A          157 EGGKITVLDTVPGAWSLGFFYEHVSEYTGLGGDNPGKLMGLAAHGTTVDETLSAFAFDSDGYRLNLIDPQARDPEDWDEY  236 (576)
T ss_dssp             ETTEEEEEEEEEGGGCHHHHHHHHHHHTTSCTTCHHHHHHHHTTSCCSCTTTTTEEEETTEEEETTSCTTCCCTTSSSSH
T ss_pred             eCCEEEEEEEeccCChHHHHHHHHHHHcCCCCCCccceeEEcCCCCCchhhhHhhccCCCceeeeccccccccccccccc
Confidence            35666667665  123455666666666766545  49999999987  3444332 11 0100           11111


Q ss_pred             c--------------------cccccccccccc--cccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Q psy6720          65 L--------------------GMFSFGHMNSKE--KRESVS--REDLARATLVTITNNIGSIARMSAINENINKVVFVGN  120 (182)
Q Consensus        65 g--------------------iASsFGK~~~~~--~~~~~~--~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~  120 (182)
                      .                    ..--|+....+.  ..++..  .+|||+|....+...+..++..+++.+++++|+++|.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~~~~~~~~~~~~~~~dIAasfQ~~l~~~L~~~~~~a~~~tg~~~l~LaGG  316 (576)
T 3ven_A          237 SVTERAWFAHLERIYRLPPNEFVRRYDPAKGRVVRDTRRDPYEYRDLAATAQAALERAVFGLADSVLARTGERTLFVAGG  316 (576)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCCEEEEEETTTTEEEEEESSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESG
T ss_pred             cccccccccchhcccccchHHHHHHhcccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecch
Confidence            0                    001122211110  012333  7999999999999999999999999999999999999


Q ss_pred             cccccHHHHHH
Q psy6720         121 FLRVNPISMKL  131 (182)
Q Consensus       121 ~i~~~~~~m~~  131 (182)
                      ...|.....++
T Consensus       317 Va~N~~L~~~l  327 (576)
T 3ven_A          317 VGLNATMNGKL  327 (576)
T ss_dssp             GGGCHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            86665544333

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=88.62  E-value=1.5  Score=41.67  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          81 SVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        81 ~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      ..+++|||++....+...+..++..+++.+++++|+++|.... |..+.+.+...+.     +++.++.+
T Consensus       569 g~~~~dIAasFh~ala~~L~~~~~ra~~~~g~~~VvLsGGV~~-N~~Lre~L~~~l~-----g~~v~~p~  632 (657)
T 3ttc_A          569 QAPVNQRAWAFHDALAQGFAALMREQATMRGITTLVFSGGVIH-NRLLRARLAHYLA-----DFTLLFPQ  632 (657)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESGGGG-CHHHHHHHHHHTT-----TSEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHH-HHHHHHHHHHHhC-----CCEEEecC
Confidence            4689999999999999999999999999999999999999754 5555566664432     66765543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=88.47  E-value=2.3  Score=38.46  Aligned_cols=137  Identities=13%  Similarity=-0.015  Sum_probs=80.9

Q ss_pred             cCCCCceEecccc-cchh-hHHHHHHhhcCCC--CHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccccc
Q psy6720           3 IPNLSPLCVLLTS-LGGG-TFLGLCCLLTGCN--SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSKEK   78 (182)
Q Consensus         3 ~~~~~~~rvgGs~-iGGG-T~~GL~~LLtg~~--~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~~~   78 (182)
                      ++.++|+++|.|. ..-| .|=-.+++| |..  .=-.|-++|++|+ ..+++-.. .-+.+.+-.|+.+..-+..    
T Consensus       143 ~~~~~~~~lg~t~d~s~G~~~D~~a~~l-gl~~~gg~~ie~lA~~g~-~~~~~p~~-~~~~~~sfsgl~~~~~~~~----  215 (540)
T 3en9_A          143 YVSKKYRVFGETLDIAVGNCLDQFARYV-NLPHPGGPYIEELARKGK-KLVDLPYT-VKGMDIAFSGLLTAAMRAY----  215 (540)
T ss_dssp             EETTEEEEEEEBSSSCHHHHHHHHHHHT-TCCSSCHHHHHHHHHTCC-CCCCCCCC-EETTEECCHHHHHHHHHHH----
T ss_pred             EeCCceEEEeeccchHhHHHHHHHHHHc-CCCCCCHHHHHHHHHcCC-ccCcCCCC-CCCcceecHHHHHHHHHHH----
Confidence            3456777777652 2222 233344444 332  2247888999997 22332110 0011111111111110110    


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEec
Q psy6720          79 RESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLE  150 (182)
Q Consensus        79 ~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~  150 (182)
                      .+....+|+|+|....+...+...+..+++.+++++|+++|-... |..+.+.+.....   ..+++.++++
T Consensus       216 ~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~~~~~~~~GGVa~-N~~l~~~l~~~~~---~~~~~~~~p~  283 (540)
T 3en9_A          216 DAGERLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVAA-NNRLREMLKAMCE---GQNVDFYVPP  283 (540)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGG-CHHHHHHHHHHHH---HTTCEEECCC
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCcHHh-HHHHHHHHHHHHH---hcCCEEEeCC
Confidence            123578999999999999999999999999999999999999754 5556566664333   3467776643

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=88.16  E-value=6.7  Score=35.11  Aligned_cols=124  Identities=15%  Similarity=0.038  Sum_probs=77.7

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCC-CCHHHHHHHHhcCCCCCCc-ceeccccCCCCCCcc---cccccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGC-NSFEEAIELATSGDNTKVD-KLVRDIYGGSYERFL---GMFSFGHMNSKEKR   79 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~-~~f~ei~~lA~~Gd~~~vD-llV~DIyg~~~~~lg---iASsFGK~~~~~~~   79 (182)
                      ++.|---|++..||.++.=+.+.+... .+.++++++|++-....-. +.+-...|...|...   -++-+|-      .
T Consensus       287 ~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl------~  360 (504)
T 3ll3_A          287 KTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDANARGSFVGL------T  360 (504)
T ss_dssp             TTEEEEEEEESCSHHHHHHHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEE------C
T ss_pred             CCeEEEEeehhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCccCeEEECC------C
Confidence            344554566777887776566555433 4677777777654432222 334444454433321   3333441      2


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEcccccccHHHHHHHHHH
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAI-NENINKVVFVGNFLRVNPISMKLLAYA  135 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~-~~~i~~Ivf~G~~i~~~~~~m~~i~~a  135 (182)
                      ...+++|++|+++.-|+..+-+.--...+ ...+++|+.+|.. ..++..+++++.+
T Consensus       361 ~~~~~~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGg-a~s~~~~Qi~ADv  416 (504)
T 3ll3_A          361 RMHQKPEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGF-LKSDFVRQLCANI  416 (504)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGG-GCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCch-hcCHHHHHHHHHh
Confidence            34689999999999999988776443322 2357899999996 6788889998844

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=81.78  E-value=9.2  Score=31.27  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhc----CCceEEEecCCchh
Q psy6720          85 EDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK----GTQKALFLEHEVCI  155 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~----g~~~alFl~h~gyl  155 (182)
                      +..|+.++.-.+..+++.....+...+.+.||+.|......+...+.+...++-...    ...+....+.+...
T Consensus       236 d~~a~~i~~~~~~~L~~~i~~l~~~l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a  310 (326)
T 2qm1_A          236 DHFALMVVDRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEA  310 (326)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchH
Confidence            356778888999999998888889999999999999987778777777766553321    24555554444443

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=81.55  E-value=12  Score=31.03  Aligned_cols=70  Identities=17%  Similarity=-0.036  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHh----cCCceEEEecCCchh
Q psy6720          86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWS----KGTQKALFLEHEVCI  155 (182)
Q Consensus        86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws----~g~~~alFl~h~gyl  155 (182)
                      ..|+.++.-.+..++......+...+.+.||+.|...+..+..++.+...++-..    ...++..+-+.+..-
T Consensus       235 ~~a~~~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a  308 (321)
T 3r8e_A          235 ALALAVWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDA  308 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcH
Confidence            4577889999999999999999999999999999998777877777776655432    245666666666555

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=81.37  E-value=14  Score=30.61  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhc-----CCceEEEecCCchh
Q psy6720          86 DLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK-----GTQKALFLEHEVCI  155 (182)
Q Consensus        86 Dia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~-----g~~~alFl~h~gyl  155 (182)
                      ..|+.++.-.+..++......+...+.+.||+.|......+..++.+...++-+..     ...+...-+.+..-
T Consensus       227 ~~a~~~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a  301 (321)
T 3vgl_A          227 PVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKA  301 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcH
Confidence            45678899999999999999999999999999999988878777777776664322     34455555544443

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=80.38  E-value=19  Score=32.32  Aligned_cols=133  Identities=16%  Similarity=0.037  Sum_probs=78.1

Q ss_pred             ceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccccCCCH
Q psy6720           8 PLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKRESVSR   84 (182)
Q Consensus         8 ~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~~~~~~   84 (182)
                      |.--|++..+|..+.=|...+....+..+..++++.=..++-=+.+-...|...|-..   -++-+|-      ....++
T Consensus       300 y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Gl------t~~~~~  373 (526)
T 3ezw_A          300 YALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGL------TRGVNA  373 (526)
T ss_dssp             EEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEE------CTTCCH
T ss_pred             eeeHHHHHHHHHHHHHHHHHhccccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcccCeEEecC------CCCCCH
Confidence            3334666777777765666554444444444444332211111333334443322111   3344441      235689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCc
Q psy6720          85 EDLARATLVTITNNIGSIARMSAIN--ENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEV  153 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~--~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~g  153 (182)
                      +|++|+++.-|++.+-++--...+.  ..+++|+.+|.. ..|+..|++++.+   .   ++...-++...
T Consensus       374 ~~i~RAvlEgia~~~r~~le~l~~~~g~~~~~i~v~GGg-aks~~~~Qi~ADv---l---g~pV~~~~~~E  437 (526)
T 3ezw_A          374 NHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGA-VANNFLMQFQSDI---L---GTRVERPEVRE  437 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGG-GGCHHHHHHHHHH---H---TSEEEEESCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECch-hhCHHHHHHHHHH---H---CCEEEeCCCCc
Confidence            9999999999999887765544443  457899999997 6788899998844   4   45554455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2i7na2	212	c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1	2e-41
d2ewsa1	267	c.55.1.14 (A:1-267) Type II pantothenate kinase, C	9e-15

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 2e-41
 Identities = 109/145 (75%), Positives = 125/145 (86%), Gaps = 7/145 (4%)

Query: 14  TSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGM------ 67
           TSLGGGTFLGLCCLLTGC +FEEA+E+A  GD+T VDKLV+DIYGG YE   G+      
Sbjct: 55  TSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYE-RFGLQGSAVA 113

Query: 68  FSFGHMNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPI 127
            SFG+M SKEKR+S+S+EDLARATLVTITNNIGSIARM A+NENI++VVFVGNFLR+N +
Sbjct: 114 SSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMV 173

Query: 128 SMKLLAYAMDYWSKGTQKALFLEHE 152
           SMKLLAYAMD+WSKG  KALFLEHE
Sbjct: 174 SMKLLAYAMDFWSKGQLKALFLEHE 198

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

 Score = 68.1 bits (165), Expect = 9e-15
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 15  SLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSY--ERFLGMFSFGH 72
             GGG   GL  LL+    +++  ++A  GD   +D  VR IY  +          +   
Sbjct: 118 GTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFG 177

Query: 73  MNSKEKRESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLL 132
                     +  +   A +  +   + ++A   A       +V++G+    N +  K++
Sbjct: 178 HVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVV 237

Query: 133 AYAMDYWSKGTQKALFLEHE 152
               DY      K  ++E+ 
Sbjct: 238 E---DYTVLRGCKPYYVENG 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	100.0
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	99.7
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	95.54
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	92.64
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	88.61
d2hoea2	169	N-acetylglucosamine kinase {Thermotoga maritima [T	88.08
d1saza2	203	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	87.81
d1z05a2	197	Transcriptional regulator VC2007 {Vibrio cholerae	81.37
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	80.18

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-42  Score=283.88  Aligned_cols=159  Identities=70%  Similarity=1.063  Sum_probs=150.8

Q ss_pred             CCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc-----cccccccccccccc
Q psy6720           5 NLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL-----GMFSFGHMNSKEKR   79 (182)
Q Consensus         5 ~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg-----iASsFGK~~~~~~~   79 (182)
                      +++|+|||||++|||||+||++||+|..+++||.+||++||++++|++|+|||+++++..|     +|++|||+...+..
T Consensus        46 ~~~~~~iggT~~gGgtf~gla~lLlg~~~~~eI~klA~~G~~~~~dl~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~  125 (212)
T d2i7na2          46 KDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKR  125 (212)
T ss_dssp             TTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSEEHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHH
T ss_pred             CCceEEecCCcccHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccCccCCCcCCCCCCcccCCHHHHHHHhhhhhhcccc
Confidence            4899999999999999999999999999999999999999999999999999999887654     99999999876666


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhh
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIF  159 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~  159 (182)
                      ++.+++|+|+|++.||.++|+++++++|+.+++++|+|+|.+.+|++..+++++.+++||++.+++++|++|++|+ |++
T Consensus       126 ~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~-gal  204 (212)
T d2i7na2         126 DSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF-GAV  204 (212)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCH-HHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhh-HHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999 788


Q ss_pred             HHhhc
Q psy6720         160 DHWTS  164 (182)
Q Consensus       160 ~a~~~  164 (182)
                      ||+..
T Consensus       205 GA~l~  209 (212)
T d2i7na2         205 GALLE  209 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.70  E-value=3.3e-16  Score=123.45  Aligned_cols=154  Identities=21%  Similarity=0.301  Sum_probs=127.4

Q ss_pred             cCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcc---cccccccccccccc
Q psy6720           3 IPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFL---GMFSFGHMNSKEKR   79 (182)
Q Consensus         3 ~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lg---iASsFGK~~~~~~~   79 (182)
                      .....+.+..||++|+|++++..-+..+...++|+-.++..|++..+|..+++.+........   .+..+.... ....
T Consensus       106 ~~~~~~~~~~g~g~G~g~~~~~~~~~~~~~~~ge~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  184 (267)
T d2ewsa1         106 FDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVL-HHLD  184 (267)
T ss_dssp             ECSSCEEEEEEESCSHHHHHHHHHHHHCCCCHHHHHHHHTTCCCTTTCEETTTC-------CCTTSEEETTTTGG-GCTT
T ss_pred             ccCceeEeecccccccceehhhHHHhcCCCChhHHHHhhccCCCcccccccchhhcCCCccchhhhhhhhhcchh-hhhh
Confidence            345678999999999999999999999999999999999999999999999998776433332   122211111 1224


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhh
Q psy6720          80 ESVSREDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIF  159 (182)
Q Consensus        80 ~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~  159 (182)
                      ...+++|++++++.++.+++++++...+...+.++||+.|..++++|.+++.++   +||++.+.+.+|++|++|. ||+
T Consensus       185 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~Iv~~GG~~~~~~~l~~~i~---~~~~~~~~~i~~~~~~~~a-Gai  260 (267)
T d2ewsa1         185 ADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVE---DYTVLRGCKPYYVENGAFS-GAI  260 (267)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESGGGTTCHHHHHHHH---HHHHHTTCEEEECTTGGGH-HHH
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEECChhhcCHHHHHHHH---HHHHhCCCEEEECCCccHH-HHH
Confidence            567999999999999999999999999999999999999999999999999998   8999999999999999999 666


Q ss_pred             HH
Q psy6720         160 DH  161 (182)
Q Consensus       160 ~a  161 (182)
                      +|
T Consensus       261 GA  262 (267)
T d2ewsa1         261 GA  262 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.54  E-value=0.01  Score=44.80  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=65.0

Q ss_pred             CHHHHHHHHhcCCCCCCcceeccccCCCCCCccccccccccccc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy6720          33 SFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNSK-EKRESVSREDLARATLVTITNNIGSIARMSAINEN  111 (182)
Q Consensus        33 ~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~~-~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~~  111 (182)
                      +..|+.+++.+++..         +..    -....+|.+-... ...+....+|++..++..+...+   .....+..+
T Consensus       144 ~~~e~~~l~~~~~~~---------~~~----~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~  207 (259)
T d1huxa_         144 KVSDLAELGAKSTKR---------VAI----SSTCTVFAESEVISQLSKGTDKIDIIAGIHRSVASRV---IGLANRVGI  207 (259)
T ss_dssp             CTTTHHHHHTTCCSC---------CCC----CCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---HHHHHTTCC
T ss_pred             CHHHHHHHHhcCCCC---------ccc----CCCccchhhhHHhHHhhCCCcHHHHHHHHHHHHHHHH---HHHHHhccC
Confidence            456677788877632         100    0133445442110 11234567777777666554444   445667788


Q ss_pred             CCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCCchhhhhhHH
Q psy6720         112 INKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHEVCIIGIFDH  161 (182)
Q Consensus       112 i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~gyl~ga~~a  161 (182)
                      .++||++|... .++...+.++   +.+   +.+.++++|..+- |+++|
T Consensus       208 ~~~Iv~gGGv~-~~~~~~~~l~---~~l---~~~i~~~~~~~~a-gaiGA  249 (259)
T d1huxa_         208 VKDVVMTGGVA-QNYGVRGALE---EGL---GVEIKTSPLAQYN-GALGA  249 (259)
T ss_dssp             CSSEEEESGGG-GCHHHHHHHH---HHH---CSCEECCGGGGGH-HHHHH
T ss_pred             CCcEEEEcccc-ccHHHHHHHH---HHH---CCCEEcCCCccHH-HHHHH
Confidence            99999999975 5677778887   445   5678889999987 55544

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=92.64  E-value=0.76  Score=35.55  Aligned_cols=139  Identities=13%  Similarity=0.034  Sum_probs=83.5

Q ss_pred             CCcCCCCceEecccccchhhHHHHHHhhcCCCCHHHHHHHHhcCCC-CCCcceeccccCCCCCCcc---ccccccccccc
Q psy6720           1 WKIPNLSPLCVLLTSLGGGTFLGLCCLLTGCNSFEEAIELATSGDN-TKVDKLVRDIYGGSYERFL---GMFSFGHMNSK   76 (182)
Q Consensus         1 ~~~~~~~~~rvgGs~iGGGT~~GL~~LLtg~~~f~ei~~lA~~Gd~-~~vDllV~DIyg~~~~~lg---iASsFGK~~~~   76 (182)
                      |++++..+-.+.|+.-.+|...-=.+-..+..+.++..+.+..-.. ++.=+.+--..|...|-..   .++-+| +   
T Consensus        37 ~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~g~~flP~~~G~~~P~~~~~arg~~~G-l---  112 (235)
T d1r59o2          37 YGINGKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFG-L---  112 (235)
T ss_dssp             CCSSSCCCEEEECCCSCSSHHHHHTTTTSCSSSSGGGGTTTTSSSSSCSSCEEECCTTCCCTTTCCSSCCCEEES-C---
T ss_pred             EEeCCccEEEeHHHHHHHHHHHHHHHhhhhcccchhhhcccccccCCCCcceeeehhhhccccccCCCcceeEee-c---
Confidence            5666555555556555555555444433343444433343333222 2223444445554433221   445554 2   


Q ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEecCC
Q psy6720          77 EKRESVSREDLARATLVTITNNIGSIARMSAINE--NINKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFLEHE  152 (182)
Q Consensus        77 ~~~~~~~~eDia~SLl~Mv~~nIg~la~l~A~~~--~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl~h~  152 (182)
                        ....+++|++|+++.-|++.+-++--...+..  .+++|...|.. ..++..|++++..   .   ++...-++..
T Consensus       113 --~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~~~~i~~~GG~-s~s~~~~Qi~Adv---l---g~~v~~~~~~  181 (235)
T d1r59o2         113 --TRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGA-AKNDLLMQFQADI---L---DIDVQRAANL  181 (235)
T ss_dssp             --CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEEEST-TSCHHHHHHHHHH---H---SSEEEEESCC
T ss_pred             --ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEecCcc-hhCHHHHhhhhhc---c---ceeeeecccc
Confidence              23579999999999999999999876665543  57899999997 7778888998844   3   4555555554

>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=2.6  Score=29.68  Aligned_cols=71  Identities=11%  Similarity=-0.000  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHHhc--CCceEEEecCCchh
Q psy6720          85 EDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYWSK--GTQKALFLEHEVCI  155 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~--g~~~alFl~h~gyl  155 (182)
                      +..++.++.-....+++.........+.++||+.|......+..++.+...++-...  ...+..+.+++..-
T Consensus        77 d~~a~~~~~~~~~~la~~l~n~~~~~dPe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a  149 (169)
T d2hoea2          77 DVRVKEYFDDIARYFSIGLLNLIHLFGISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPV  149 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCH
Confidence            456788999999999999999999999999999999987778778888776665432  33455555554443

>d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=87.81  E-value=1.8  Score=33.57  Aligned_cols=126  Identities=14%  Similarity=0.225  Sum_probs=72.0

Q ss_pred             cCCCCHHHHHHHHhcCCCCCCcceeccccCCCCCCcccccccccccc--cccccCCCHHHHHHHHHHHHHHHHH-HHHHH
Q psy6720          29 TGCNSFEEAIELATSGDNTKVDKLVRDIYGGSYERFLGMFSFGHMNS--KEKRESVSREDLARATLVTITNNIG-SIARM  105 (182)
Q Consensus        29 tg~~~f~ei~~lA~~Gd~~~vDllV~DIyg~~~~~lgiASsFGK~~~--~~~~~~~~~eDia~SLl~Mv~~nIg-~la~l  105 (182)
                      +|.-|+..++.+..++..+.-++ .+-+++.    -|+.+-.|.-..  -.++.+.- .+-|+-.+.++++.|. +++.+
T Consensus        43 sG~ldp~~~~~l~~~~~~s~~e~-~~~Ln~~----sGl~g~sGtsD~rev~~~~~~G-d~~A~lA~d~~~y~i~K~Iga~  116 (203)
T d1saza2          43 SGTLPLTQLVDLCFSGKFTYEEM-KKRIVGN----GGLVAYLGTSDAREVVRRIKQG-DEWAKRVYRAMAYQIAKWIGKM  116 (203)
T ss_dssp             CCSCCHHHHHHHHTSSCCCTTGG-GSTTTTS----CTHHHHHSCCCHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHhcCCCHHHH-HHHHhhc----cCccccCCCCcHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            45668999999999987543332 2223332    232222231110  01111111 2344555666666665 56888


Q ss_pred             HHHHhC-CCEEEEEcccccccHHHHHHHHHHHHHHhcCCceEEEe-cCCch-h-hhhhHHhh
Q psy6720         106 SAINEN-INKVVFVGNFLRVNPISMKLLAYAMDYWSKGTQKALFL-EHEVC-I-IGIFDHWT  163 (182)
Q Consensus       106 ~A~~~~-i~~Ivf~G~~i~~~~~~m~~i~~ai~yws~g~~~alFl-~h~gy-l-~ga~~a~~  163 (182)
                      +|.+.| ++-|||+|.--.+.+.+.+.|..-+.|.  +.+. +++ ++|.= + .|+++...
T Consensus       117 ~a~L~G~vDaIvfTgGIgen~~~vr~~I~~~l~~l--gpv~-v~Pg~nE~~ala~~alrvl~  175 (203)
T d1saza2         117 AAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFI--APVL-VFPGSNEEKALALSALRVLR  175 (203)
T ss_dssp             HHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTT--SCEE-EEEBCCHHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCEEEECCccccCcHHHHHHHHHhcccc--ccEE-EecCCCHHHHHHHHHHHHhc
Confidence            889988 9999999998667776777777777776  2233 466 44432 2 56665553

>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=81.37  E-value=7.1  Score=27.94  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHH
Q psy6720          87 LARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDY  138 (182)
Q Consensus        87 ia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~y  138 (182)
                      .|+.++.-++..+++.........+.++||+.|......+...+.+...++-
T Consensus       101 ~a~~~~~~~~~~la~~i~nl~~~ldP~~IviGG~~~~~~~~~~~~i~~~~~~  152 (197)
T d1z05a2         101 LAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIRE  152 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcCCCEEEEecchHHhhHHHHHHHHHHHHH
Confidence            4566888999999999999999999999999999887777777777766543

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=80.18  E-value=2.7  Score=29.70  Aligned_cols=68  Identities=9%  Similarity=-0.012  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcccccccHHHHHHHHHHHHHH-hcCCceEEEecCCc
Q psy6720          85 EDLARATLVTITNNIGSIARMSAINENINKVVFVGNFLRVNPISMKLLAYAMDYW-SKGTQKALFLEHEV  153 (182)
Q Consensus        85 eDia~SLl~Mv~~nIg~la~l~A~~~~i~~Ivf~G~~i~~~~~~m~~i~~ai~yw-s~g~~~alFl~h~g  153 (182)
                      +..++.++.-++..+++.-.......+.++||+.|......+ .++.+...+... .....+...-+.+.
T Consensus        88 d~~a~~i~~~~~~~la~~l~~l~~~ldP~~IvlgG~i~~~~~-~~~~i~~~~~~~~~~~~~~I~~s~l~~  156 (170)
T d2aa4a2          88 DEQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEG-YLALVETYLAQEPAAFHVDLLAAHYRH  156 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEHHHHTSTT-HHHHHHHHHTTSCGGGCCEEEECSCSS
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhheECCCEEEEeChhhhhhh-HHHHHHHHHHhccCCCCCeEEecCCCC
Confidence            455778899999999999999999999999999998754444 445555433321 11234544544443