Psyllid ID: psy6736
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1023 | 2.2.26 [Sep-21-2011] | |||||||
| Q9U639 | 652 | Heat shock 70 kDa protein | N/A | N/A | 0.474 | 0.743 | 0.880 | 0.0 | |
| P11147 | 651 | Heat shock 70 kDa protein | yes | N/A | 0.474 | 0.745 | 0.842 | 0.0 | |
| Q71U34 | 646 | Heat shock cognate 71 kDa | N/A | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| P11142 | 646 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| A2Q0Z1 | 646 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| P19120 | 650 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.718 | 0.863 | 0.0 | |
| Q5NVM9 | 646 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| P63018 | 646 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| P63017 | 646 | Heat shock cognate 71 kDa | yes | N/A | 0.456 | 0.722 | 0.863 | 0.0 | |
| P08108 | 651 | Heat shock cognate 70 kDa | N/A | N/A | 0.456 | 0.717 | 0.863 | 0.0 |
| >sp|Q9U639|HSP7D_MANSE Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/494 (88%), Positives = 459/494 (92%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 K---------GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSIT
Sbjct: 239 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRSTMEPVEKSLRDAKMDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 358
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTTLIKRNT 418
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQV+EGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A+EKST KENKITITND+GRLSKE+IERMVN+AEKY+ EDEKQK I A
Sbjct: 479 DIDANGILNVSAVEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDEKQKETIQA 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKST+EDEKLKDKISD+++ ILDKCND IKWLD+NQLA+KEE+EHKQKE
Sbjct: 539 KNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE ICNPIITKLYQ
Sbjct: 599 LEGICNPIITKLYQ 612
|
Manduca sexta (taxid: 7130) |
| >sp|P11147|HSP7D_DROME Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/494 (84%), Positives = 452/494 (91%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GERNVLIFDLGGGTFDVSIL+I+DGIFEVKSTAGDTHLGGEDFDNR+V
Sbjct: 188 K---------AVGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
HFVQEFKRK+KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG DFYTSIT
Sbjct: 239 THFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TM+PVEK+LRDAK+DK+ IHDIVLVGGSTRIPKVQ+LLQD FNGKE
Sbjct: 299 RARFEELNADLFRSTMDPVEKALRDAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKE 358
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKS+EVQDLLLLDVTPLSLGIETAGGVM+ LIKRNT
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNT 418
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFEL+ IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTA+E+ST KENKITITND+GRLSKEDIERMVN+AEKY+ EDEKQK I+A
Sbjct: 479 DIDANGILNVTALERSTNKENKITITNDKGRLSKEDIERMVNEAEKYRNEDEKQKETIAA 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN LESYCFNMK+T++++ LK KISD++RT ILDKCN+ IKWLDANQLA+KEE+EH+QKE
Sbjct: 539 KNGLESYCFNMKATLDEDNLKTKISDSDRTTILDKCNETIKWLDANQLADKEEYEHRQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEGVCNPIITKLYQ 612
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Chaperone. Isoform 2 may function as an endogenous inhibitory regulator of HSC70 by competing the co-chaperones. Saguinus oedipus (taxid: 9490) |
| >sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Chaperone. Isoform 2 may function as an endogenous inhibitory regulator of HSC70 by competing the co-chaperones. Homo sapiens (taxid: 9606) |
| >sp|A2Q0Z1|HSP7C_HORSE Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Chaperone. Equus caballus (taxid: 9796) |
| >sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Chaperone. Bos taurus (taxid: 9913) |
| >sp|Q5NVM9|HSP7C_PONAB Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Chaperone. Pongo abelii (taxid: 9601) |
| >sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Acts as a repressor of transcriptional activation. Inhibits the transcriptional coactivator activity of CITED1 on Smad-mediated transcription. Chaperone. Rattus norvegicus (taxid: 10116) |
| >sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 447/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
|
Chaperone. Mus musculus (taxid: 10090) |
| >sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/476 (86%), Positives = 444/476 (93%), Gaps = 9/476 (1%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDKKVG+ ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKVGA---------ERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRKYKKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKYKKDISDN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEKSLRDAKMDKAQ+HDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKSLRDAKMDKAQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGI+NV+A +KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAADKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
KENKITITND+GRLSKEDIERMV +AEKYK ED+ Q+ +S+KNSLESY FNMKSTVEDE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTVEDE 556
Query: 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
KL+ KISD ++T+IL+KCN+VI WLD NQ AEKEE+EH QKELE +CNPIITKLYQ
Sbjct: 557 KLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQ 612
|
Oncorhynchus mykiss (taxid: 8022) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1023 | ||||||
| 292606983 | 654 | heat shock cognate protein 70 [Nilaparva | 0.482 | 0.755 | 0.890 | 0.0 | |
| 156254075 | 651 | 70 kDa heat shock protein [Bemisia tabac | 0.483 | 0.760 | 0.872 | 0.0 | |
| 399894431 | 658 | heat shock protein 70 cognate [Lycorma d | 0.474 | 0.737 | 0.886 | 0.0 | |
| 242003741 | 660 | Heat shock 70 kDa protein cognate, putat | 0.476 | 0.737 | 0.888 | 0.0 | |
| 388523599 | 653 | heat shock protein 70 [Cryptocercus punc | 0.474 | 0.742 | 0.888 | 0.0 | |
| 82941224 | 626 | heat shock cognate 70 [Plutella xylostel | 0.478 | 0.782 | 0.879 | 0.0 | |
| 322785911 | 534 | hypothetical protein SINV_15088 [Solenop | 0.474 | 0.908 | 0.874 | 0.0 | |
| 321459623 | 664 | hypothetical protein DAPPUDRAFT_256736 [ | 0.482 | 0.743 | 0.856 | 0.0 | |
| 332030513 | 651 | Heat shock 70 kDa protein cognate 4 [Acr | 0.474 | 0.745 | 0.876 | 0.0 | |
| 334361426 | 654 | heat shock protein 70 [Agrotis ipsilon] | 0.474 | 0.741 | 0.878 | 0.0 |
| >gi|292606983|gb|ADE34170.1| heat shock cognate protein 70 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/503 (89%), Positives = 471/503 (93%), Gaps = 9/503 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKDSGTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 129 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAAIAYGLDK 188
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K G GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 189 K---------GHGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 239
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRK+KKDLT+NKRALRRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 240 NHFVQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 299
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 300 RARFEELNADLFRSTMEPVEKSLRDAKMDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 359
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 360 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 419
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 420 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 479
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTAIEKSTGKENKITITND+GRLSK+DIERMVNDAEKYKAEDEKQK VI+A
Sbjct: 480 DIDANGILNVTAIEKSTGKENKITITNDKGRLSKDDIERMVNDAEKYKAEDEKQKQVIAA 539
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKST+EDEKLKDKIS++++T ILDKCN+VI+WLDANQLAEKEEFEHKQKE
Sbjct: 540 KNALESYCFNMKSTLEDEKLKDKISESDKTAILDKCNEVIRWLDANQLAEKEEFEHKQKE 599
Query: 584 LEAICNPIITKLYQGSGGAPGGF 606
LEA+CNPIITKLYQ GGAPGG
Sbjct: 600 LEALCNPIITKLYQSGGGAPGGM 622
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156254075|gb|AAZ17399.2| 70 kDa heat shock protein [Bemisia tabaci] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/502 (87%), Positives = 467/502 (93%), Gaps = 7/502 (1%)
Query: 101 ILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160
I K+T+E L K +PAYFN S ++TKDSG IAGLNVLRIINEPTAAAIAYG
Sbjct: 125 IKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGAIAGLNVLRIINEPTAAAIAYG 184
Query: 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220
LDKK +GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN
Sbjct: 185 LDKKA-------SGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 237
Query: 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 280
RMVNHF QEFKRKYKKDLTTNKRALRRLRTACE+AKR LSSS+Q SIEIDSLFEG+DFYT
Sbjct: 238 RMVNHFAQEFKRKYKKDLTTNKRALRRLRTACEKAKRILSSSSQTSIEIDSLFEGIDFYT 297
Query: 281 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
SITRARFEELNADLFR TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP+VQKLLQDFFN
Sbjct: 298 SITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPRVQKLLQDFFN 357
Query: 341 GKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIK 400
GKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIK
Sbjct: 358 GKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTVLIK 417
Query: 401 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIE 460
RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER MTKDNNLLGKFELT IPPAPRGVPQIE
Sbjct: 418 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERTMTKDNNLLGKFELTGIPPAPRGVPQIE 477
Query: 461 VTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAV 520
VTFDIDANGILNVTAIEKSTGKENKITITND+GRLSKEDIE+MV+DAEKYK EDEKQ+ V
Sbjct: 478 VTFDIDANGILNVTAIEKSTGKENKITITNDKGRLSKEDIEKMVSDAEKYKHEDEKQRQV 537
Query: 521 ISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHK 580
I+AKNSLESYCFNMKST+ED+KLKDKIS++++T I++KCN+VI+WLD+NQLA+KEEFEHK
Sbjct: 538 IAAKNSLESYCFNMKSTMEDDKLKDKISESDKTAIMEKCNEVIRWLDSNQLADKEEFEHK 597
Query: 581 QKELEAICNPIITKLYQGSGGA 602
QKELEA+CNPIITKLYQG+GGA
Sbjct: 598 QKELEALCNPIITKLYQGAGGA 619
|
Source: Bemisia tabaci Species: Bemisia tabaci Genus: Bemisia Family: Aleyrodidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|399894431|gb|AFP54307.1| heat shock protein 70 cognate [Lycorma delicatula] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/494 (88%), Positives = 462/494 (93%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 129 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 188
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 189 K---------GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 239
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRK+KKDLT NKRALRRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSIT
Sbjct: 240 NHFVQEFKRKHKKDLTQNKRALRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSIT 299
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 300 RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 359
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 360 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 419
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 420 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 479
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTA+EKSTGKENKITITND+GRLSKEDIERMVNDAEKY+AEDEKQK VI+A
Sbjct: 480 DIDANGILNVTAVEKSTGKENKITITNDKGRLSKEDIERMVNDAEKYRAEDEKQKQVIAA 539
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESYCFNMKST+EDEKLKDKIS+ ++ ++++CN+VI+WLDANQLAEKEEFEHKQKE
Sbjct: 540 KNSLESYCFNMKSTMEDEKLKDKISETDKQSVIERCNEVIRWLDANQLAEKEEFEHKQKE 599
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 600 LEQLCNPIITKLYQ 613
|
Source: Lycorma delicatula Species: Lycorma delicatula Genus: Lycorma Family: Fulgoridae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242003741|ref|XP_002422844.1| Heat shock 70 kDa protein cognate, putative [Pediculus humanus corporis] gi|212505714|gb|EEB10106.1| Heat shock 70 kDa protein cognate, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/494 (88%), Positives = 458/494 (92%), Gaps = 7/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKDSG IAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGAIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K G+GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KTA-------GTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDL TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT
Sbjct: 241 NHFVQEFKRKYKKDLQTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 300
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 301 RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 360
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV PLSLGIETAGGVMT LIKRNT
Sbjct: 361 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVAPLSLGIETAGGVMTTLIKRNT 420
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQ+EVTF
Sbjct: 421 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQVEVTF 480
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTA EK+TGKENKITITND+GRLSKE+IERMVN+AEKYKAEDEKQKA ISA
Sbjct: 481 DIDANGILNVTACEKTTGKENKITITNDKGRLSKEEIERMVNEAEKYKAEDEKQKATISA 540
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKST+EDEK+KDKISD+++ I DKCND+IKWLDANQLAE EE+EHKQKE
Sbjct: 541 KNALESYCFNMKSTIEDEKIKDKISDSDKQTIQDKCNDIIKWLDANQLAEAEEYEHKQKE 600
Query: 584 LEAICNPIITKLYQ 597
LE ICNPIITKLYQ
Sbjct: 601 LEGICNPIITKLYQ 614
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|388523599|gb|AFK49798.1| heat shock protein 70 [Cryptocercus punctulatus] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/494 (88%), Positives = 461/494 (93%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKDSG IAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKSVSSAVITVPAYFNDSQRQATKDSGAIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K G GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 K---------GHGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDLT+NKRA+RRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSIT
Sbjct: 239 NHFVQEFKRKYKKDLTSNKRAVRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 358
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAIL GDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILAGDKSEEVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTAIEKSTGKENKITITND+GRLSKE+IERMVNDAEKY+AEDEKQK I+A
Sbjct: 479 DIDANGILNVTAIEKSTGKENKITITNDKGRLSKEEIERMVNDAEKYRAEDEKQKLTIAA 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKSTVEDEKLKDKIS++++T I+DKCN+VI+WLDANQLAEKEEFE +QKE
Sbjct: 539 KNALESYCFNMKSTVEDEKLKDKISESDKTAIMDKCNEVIRWLDANQLAEKEEFESQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LEAICNPI+TKLYQ
Sbjct: 599 LEAICNPIVTKLYQ 612
|
Source: Cryptocercus punctulatus Species: Cryptocercus punctulatus Genus: Cryptocercus Family: Cryptocercidae Order: Blattodea Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|82941224|dbj|BAE48743.1| heat shock cognate 70 [Plutella xylostella] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/499 (87%), Positives = 462/499 (92%), Gaps = 9/499 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKDSGTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 129 KETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAAIAYGLDK 188
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K G GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 189 K---------GGGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 239
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 240 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 299
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 300 RARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 359
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 360 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTTLIKRNT 419
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQV+EGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 420 TIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 479
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+AIEKST KENKITITND+GRLSKEDIERMVN+AEKY+ EDEKQK I A
Sbjct: 480 DIDANGILNVSAIEKSTNKENKITITNDKGRLSKEDIERMVNEAEKYRNEDEKQKETIGA 539
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKST+EDEKLKDKI+D+++ ILDKCND IKWLD+NQLA+KEE+EHKQKE
Sbjct: 540 KNALESYCFNMKSTMEDEKLKDKITDSDKQIILDKCNDTIKWLDSNQLADKEEYEHKQKE 599
Query: 584 LEAICNPIITKLYQGSGGA 602
LE ICNPIITKLY G+GGA
Sbjct: 600 LEGICNPIITKLYPGAGGA 618
|
Source: Plutella xylostella Species: Plutella xylostella Genus: Plutella Family: Plutellidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322785911|gb|EFZ12530.1| hypothetical protein SINV_15088 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/494 (87%), Positives = 461/494 (93%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 11 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 70
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K +GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 71 K---------ATGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 121
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDLT+NKRALRRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 122 NHFVQEFKRKYKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 181
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEEL ADLFRGT+EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 182 RARFEELCADLFRGTLEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 241
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT
Sbjct: 242 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 301
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTY+DNQPGVLIQVYEGERAMTKDNNLLGKFEL+ IPPAPRGVPQIEVTF
Sbjct: 302 TIPTKQTQTFTTYADNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTF 361
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMVN+AEKY++EDEKQK I+A
Sbjct: 362 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVNEAEKYRSEDEKQKETIAA 421
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN LESYCFNMKSTVEDEKLKDKIS ++ ILDKCND+IKWLDANQLA+KEE+EHKQKE
Sbjct: 422 KNGLESYCFNMKSTVEDEKLKDKISATDKQTILDKCNDIIKWLDANQLADKEEYEHKQKE 481
Query: 584 LEAICNPIITKLYQ 597
LEAICNPI+TKLYQ
Sbjct: 482 LEAICNPIVTKLYQ 495
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321459623|gb|EFX70674.1| hypothetical protein DAPPUDRAFT_256736 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/503 (85%), Positives = 464/503 (92%), Gaps = 9/503 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 144 KETAEAYLGKTVANAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 203
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 204 KVG---------GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 254
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKD+ TNKRALRRLRTACERAKRTLSSS QASIEIDSLFEG+DFYTSIT
Sbjct: 255 NHFVQEFKRKYKKDMATNKRALRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSIT 314
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEK++RDAKMDKAQI DIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 315 RARFEELNADLFRSTMEPVEKAIRDAKMDKAQIQDIVLVGGSTRIPKVQKLLQDFFNGKE 374
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAIL GDKSE VQDLLLLDV PLSLGIETAGGVMTALIKRNT
Sbjct: 375 LNKSINPDEAVAYGAAVQAAILQGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNT 434
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT+IPPAPRGVPQIEVTF
Sbjct: 435 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTAIPPAPRGVPQIEVTF 494
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A +KSTG+ENKITITND+GRLSKE+IERMV+DAE++++EDEKQ+ +S
Sbjct: 495 DIDANGILNVSAADKSTGRENKITITNDKGRLSKEEIERMVSDAERFRSEDEKQRERVSG 554
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKSTVEDEK KDK+SDA++T ILDKCN+VIKWLDANQLA+KEEFEHKQKE
Sbjct: 555 KNALESYCFNMKSTVEDEKFKDKLSDADKTTILDKCNEVIKWLDANQLADKEEFEHKQKE 614
Query: 584 LEAICNPIITKLYQGSGGAPGGF 606
+E +CNPI+TKLYQG+GGAP F
Sbjct: 615 IERVCNPIVTKLYQGAGGAPPNF 637
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030513|gb|EGI70201.1| Heat shock 70 kDa protein cognate 4 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/494 (87%), Positives = 462/494 (93%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K +GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 K---------ATGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDLT+NKRALRRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFVQEFKRKYKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEEL ADLFRGT+EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELCADLFRGTLEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 418
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTY+DNQPGVLIQVYEGERAMTKDNNLLGKFEL+ IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYADNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMVN+AEKY++EDEKQK ISA
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVNEAEKYRSEDEKQKETISA 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN LESYCFNMKSTVEDEKLKDKIS +++ ILDKCND+IKWLDANQLA+KEE+EHKQKE
Sbjct: 539 KNGLESYCFNMKSTVEDEKLKDKISASDKQTILDKCNDIIKWLDANQLADKEEYEHKQKE 598
Query: 584 LEAICNPIITKLYQ 597
LEAICNPI+TKLYQ
Sbjct: 599 LEAICNPIVTKLYQ 612
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|334361426|gb|AEG78288.1| heat shock protein 70 [Agrotis ipsilon] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/494 (87%), Positives = 458/494 (92%), Gaps = 9/494 (1%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTI+GLNVLRIINEPTAAAIAYGLDK
Sbjct: 130 KETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDK 189
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 190 K---------GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHFVQEFKRKYKKDL TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSIT
Sbjct: 241 NHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSIT 300
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TMEPVEKSLRDAKMDK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKE
Sbjct: 301 RARFEELNADLFRSTMEPVEKSLRDAKMDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 360
Query: 344 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNT 403
LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT LIKRNT
Sbjct: 361 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTTLIKRNT 420
Query: 404 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
TIPTKQTQTFTTYSDNQPGVLIQV+EGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 421 TIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 480
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+AIEKST KENKITITND+GRLSKE+IERMVN+AEKY+ EDEKQK I A
Sbjct: 481 DIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRTEDEKQKETIQA 540
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN+LESYCFNMKST+EDEKLKDKISD+++ ILDKCND IKWLD+NQLA+KEE+EHKQKE
Sbjct: 541 KNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 600
Query: 584 LEAICNPIITKLYQ 597
LE ICNPIITK+YQ
Sbjct: 601 LEGICNPIITKMYQ 614
|
Source: Agrotis ipsilon Species: Agrotis ipsilon Genus: Agrotis Family: Noctuidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1023 | ||||||
| FB|FBgn0001219 | 651 | Hsc70-4 "Heat shock protein co | 0.474 | 0.745 | 0.775 | 1.8e-199 | |
| UNIPROTKB|F1NRW7 | 647 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.749 | 0.771 | 2.2e-199 | |
| UNIPROTKB|F1NWP3 | 646 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.750 | 0.771 | 2.2e-199 | |
| MGI|MGI:105384 | 646 | Hspa8 "heat shock protein 8" [ | 0.474 | 0.750 | 0.769 | 4.7e-199 | |
| RGD|621725 | 646 | Hspa8 "heat shock 70kDa protei | 0.474 | 0.750 | 0.769 | 4.7e-199 | |
| UNIPROTKB|P19120 | 650 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.746 | 0.769 | 4.7e-199 | |
| UNIPROTKB|E2R0T6 | 646 | HSPA8 "Uncharacterized protein | 0.474 | 0.750 | 0.769 | 4.7e-199 | |
| UNIPROTKB|P11142 | 646 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.750 | 0.769 | 4.7e-199 | |
| UNIPROTKB|A2Q0Z1 | 646 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.750 | 0.769 | 4.7e-199 | |
| UNIPROTKB|Q5NVM9 | 646 | HSPA8 "Heat shock cognate 71 k | 0.474 | 0.750 | 0.769 | 4.7e-199 |
| FB|FBgn0001219 Hsc70-4 "Heat shock protein cognate 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1931 (684.8 bits), Expect = 1.8e-199, P = 1.8e-199
Identities = 383/494 (77%), Positives = 419/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KETAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K AV GERNVLIFDLGGGTFDVSIL+I+DGIFEVKSTAGDTHLGGEDFDNR+V
Sbjct: 188 K----AV-----GERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
HFVQEFKRK+KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG DFYTSIT
Sbjct: 239 THFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFR TM+PVEK+LRDAK+DK+ IHDIVLVGGSTRIPKVQ+LLQD FNGKE
Sbjct: 299 RARFEELNADLFRSTMDPVEKALRDAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE ILHGDKS+EVQD GIETAGGVM+ LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILHGDKSQEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFEL+ IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNVTA+E+ST KENKITITND+GRLSKEDIERMVN+AEKY+ EDEKQK I+A
Sbjct: 479 DIDANGILNVTALERSTNKENKITITNDKGRLSKEDIERMVNEAEKYRNEDEKQKETIAA 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KN LESYCFNMK+T++++ LK KISD++RT ILDKCN+ IKWLDANQLA+KEE+EH+QKE
Sbjct: 539 KNGLESYCFNMKATLDEDNLKTKISDSDRTTILDKCNETIKWLDANQLADKEEYEHRQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEGVCNPIITKLYQ 612
|
|
| UNIPROTKB|F1NRW7 HSPA8 "Heat shock cognate 71 kDa protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1930 (684.5 bits), Expect = 2.2e-199, P = 2.2e-199
Identities = 381/494 (77%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 129 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 188
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 189 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 239
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 240 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 299
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 300 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 359
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 360 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 419
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 420 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 479
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 480 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 539
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KISD ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 540 KNSLESYAFNMKATVEDEKLQGKISDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 599
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 600 LEKVCNPIITKLYQ 613
|
|
| UNIPROTKB|F1NWP3 HSPA8 "Heat shock cognate 71 kDa protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1930 (684.5 bits), Expect = 2.2e-199, P = 2.2e-199
Identities = 381/494 (77%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KISD ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKISDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| MGI|MGI:105384 Hspa8 "heat shock protein 8" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| RGD|621725 Hspa8 "heat shock 70kDa protein 8" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| UNIPROTKB|P19120 HSPA8 "Heat shock cognate 71 kDa protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| UNIPROTKB|E2R0T6 HSPA8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| UNIPROTKB|P11142 HSPA8 "Heat shock cognate 71 kDa protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| UNIPROTKB|A2Q0Z1 HSPA8 "Heat shock cognate 71 kDa protein" [Equus caballus (taxid:9796)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
| UNIPROTKB|Q5NVM9 HSPA8 "Heat shock cognate 71 kDa protein" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 1927 (683.4 bits), Expect = 4.7e-199, P = 4.7e-199
Identities = 380/494 (76%), Positives = 418/494 (84%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDK
Sbjct: 128 KEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 187
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
KVG+ ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV
Sbjct: 188 KVGA---------ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
NHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSIT
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSIT 298
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKE
Sbjct: 299 RARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKE 358
Query: 344 LNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNX 403
LNKSINPDE IL GDKSE VQD GIETAGGVMT LIKRN
Sbjct: 359 LNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNT 418
Query: 404 XXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTF 463
YSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 464 DIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 523
DIDANGILNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 524 KNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKE 583
KNSLESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QKE
Sbjct: 539 KNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKE 598
Query: 584 LEAICNPIITKLYQ 597
LE +CNPIITKLYQ
Sbjct: 599 LEKVCNPIITKLYQ 612
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q5NVM9 | HSP7C_PONAB | No assigned EC number | 0.8634 | 0.4565 | 0.7229 | yes | N/A |
| P09446 | HSP7A_CAEEL | No assigned EC number | 0.7628 | 0.5073 | 0.8109 | yes | N/A |
| O73885 | HSP7C_CHICK | No assigned EC number | 0.8529 | 0.4565 | 0.7229 | yes | N/A |
| P63018 | HSP7C_RAT | No assigned EC number | 0.8634 | 0.4565 | 0.7229 | yes | N/A |
| P63017 | HSP7C_MOUSE | No assigned EC number | 0.8634 | 0.4565 | 0.7229 | yes | N/A |
| Q90473 | HSP7C_DANRE | No assigned EC number | 0.8535 | 0.4584 | 0.7226 | yes | N/A |
| P19378 | HSP7C_CRIGR | No assigned EC number | 0.8613 | 0.4565 | 0.7229 | yes | N/A |
| A2Q0Z1 | HSP7C_HORSE | No assigned EC number | 0.8634 | 0.4565 | 0.7229 | yes | N/A |
| P11147 | HSP7D_DROME | No assigned EC number | 0.8421 | 0.4740 | 0.7450 | yes | N/A |
| P11142 | HSP7C_HUMAN | No assigned EC number | 0.8634 | 0.4565 | 0.7229 | yes | N/A |
| P19120 | HSP7C_BOVIN | No assigned EC number | 0.8634 | 0.4565 | 0.7184 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1023 | |||
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-177 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-173 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 1e-173 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-171 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-162 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-159 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-152 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 1e-149 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-147 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-141 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 1e-140 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-136 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-135 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-134 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-131 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-126 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-124 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-123 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 1e-108 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-105 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-104 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-104 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-102 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-100 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 3e-92 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 4e-86 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-83 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 3e-79 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 4e-79 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 2e-75 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 8e-75 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 2e-73 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 5e-69 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 8e-67 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-64 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 9e-64 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 8e-63 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 2e-60 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 3e-58 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 8e-58 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 9e-58 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-57 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-52 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 7e-52 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 8e-52 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-51 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 7e-49 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-48 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 8e-47 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 3e-46 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 7e-43 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 6e-40 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-36 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 7e-35 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 1e-15 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 3e-13 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 4e-08 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 9e-07 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 6e-06 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 1e-05 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 1e-05 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 9e-05 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 2e-04 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 5e-04 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 0.001 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 0.001 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 0.001 | |
| cd07809 | 487 | cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup | 0.001 | |
| pfam01391 | 60 | pfam01391, Collagen, Collagen triple helix repeat | 0.002 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 0.004 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 899 bits (2326), Expect = 0.0
Identities = 383/552 (69%), Positives = 452/552 (81%), Gaps = 20/552 (3%)
Query: 90 RGVKAIFTAPDI-----LK-KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGL 143
+G K F +I K K+ +E L K +PAYFN S ++TKD+GTIAGL
Sbjct: 109 QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGL 168
Query: 144 NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFE 203
NVLRIINEPTAAAIAYGLDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFE
Sbjct: 169 NVLRIINEPTAAAIAYGLDKK---------GDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219
Query: 204 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLSSS 262
VK+TAGDTHLGGEDFDNR+V VQ+FKRK + KDL++N+RALRRLRT CERAKRTLSSS
Sbjct: 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS 279
Query: 263 TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 322
TQA+IEIDSLFEG+D+ +I+RARFEEL D FR T++PVEK L+DA MDK +H++VLV
Sbjct: 280 TQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLV 339
Query: 323 GGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 382
GGSTRIPKVQ L++DFFNGKE KSINPDEAVAYGAAVQAAIL G++S +VQDLLLLDVT
Sbjct: 340 GGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399
Query: 383 PLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLG 442
PLSLG+ETAGGVMT LI+RNTTIPTK++Q FTTY+DNQPGVLIQV+EGERAMTKDNNLLG
Sbjct: 400 PLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLG 459
Query: 443 KFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIER 502
KF L IPPAPRGVPQIEVTFDIDANGILNV+A +KSTGK NKITITND+GRLSK DI+R
Sbjct: 460 KFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDR 519
Query: 503 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDV 562
MVN+AEKYKAEDE + + AKN LE+YC++MK+T++DEK+K K+SD+++ I ++
Sbjct: 520 MVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEA 579
Query: 563 IKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG-GAPGGFPGAPGAGAPPSGAP- 620
++WL+ NQLAEKEEFEHKQKE+E++CNPI+TK+YQ +G G PGG PG G P P
Sbjct: 580 LEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPA 639
Query: 621 --GAGPGPTIEE 630
GA GPT+EE
Sbjct: 640 GAGASSGPTVEE 651
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 686 bits (1772), Expect = 0.0
Identities = 286/390 (73%), Positives = 328/390 (84%), Gaps = 27/390 (6%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
G GE+NVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+V VQ+FKRK
Sbjct: 190 GDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRK 249
Query: 691 YK-KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNA 749
+ KDL++N+RALRRLRT CERAKRTLSSSTQA+IEIDSLFEG+D+ +I+RARFEEL
Sbjct: 250 NRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCG 309
Query: 750 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 809
D FR T++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L++DFFNGKE KSINPDE
Sbjct: 310 DYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDE 369
Query: 810 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQT 869
AVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGVMT LI+RNTTIPTK++Q
Sbjct: 370 AVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQI 429
Query: 870 FTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILN 929
FTTY+DNQPGVLIQV+EGERAMTKDNNLLGKF L IPPAPRGVPQIEVTFDIDANGI
Sbjct: 430 FTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGI-- 487
Query: 930 VTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVND 989
LNV+A +KSTGK NKITITND+GRLSK DI+RMVN+
Sbjct: 488 ------------------------LNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNE 523
Query: 990 AEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
AEKYKAEDE + + AKN LE+YC++MK+
Sbjct: 524 AEKYKAEDEANRERVEAKNGLENYCYSMKN 553
|
Length = 653 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 727 bits (1878), Expect = 0.0
Identities = 286/479 (59%), Positives = 361/479 (75%), Gaps = 23/479 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN + ++TKD+G IAGLNVLRIINEPTAAA+AYGLDKK ERNVL
Sbjct: 140 VPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLDKK----------DKERNVL 189
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL I DG+FEV +T GDTHLGGEDFDNR+V+HFV+EFK+KY DL+ +
Sbjct: 190 VFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKKYGIDLSKD 249
Query: 242 KRALRRLRTACERAKRTLSS-STQASIEIDSLFE-GVDFYTSITRARFEELNADLFRGTM 299
RAL+RLR A E+AK LSS T+ ++ + G D ++TRA+FEEL ADLF T+
Sbjct: 250 PRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEELCADLFERTL 309
Query: 300 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 359
EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L+++FF GKE +K +NPDEAVA GAA
Sbjct: 310 EPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPDEAVAIGAA 368
Query: 360 VQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDN 419
VQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK++Q F+T +DN
Sbjct: 369 VQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIFSTAADN 426
Query: 420 QPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKS 479
Q V IQVY+GER M DN LLG FEL IPPAPRGVPQIEVTFDIDANGIL V+A +K
Sbjct: 427 QTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDKG 486
Query: 480 TGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
TGKE KITIT G LS ++IERMV DAE+Y AED+K+K I AKN E Y ++++ +++
Sbjct: 487 TGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLK 545
Query: 540 DEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAICNPIITKLYQ 597
+E DK+ +A++ K + I+WL + +KEE E K +EL+ + PI ++YQ
Sbjct: 546 EE--GDKLPEADKK----KVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 234/395 (59%), Positives = 289/395 (73%), Gaps = 32/395 (8%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ ERNVL+FDLGGGTFDVSIL I DG+FEV +T GDTHLGGEDFDNR+V+HFV+EF
Sbjct: 179 LDKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEF 238
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE-GVDFYTSITRARFE 745
K+KY DL+ + RAL+RLR A E+AK LSS T+ ++ + G D ++TRA+FE
Sbjct: 239 KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFE 298
Query: 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 805
EL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L+++FF GKE +K +
Sbjct: 299 ELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGV 357
Query: 806 NPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTK 865
NPDEAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK
Sbjct: 358 NPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTK 415
Query: 866 QTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDAN 925
++Q F+T +DNQ V IQVY+GER M DN LLG FEL IPPAPRGVPQIEVTFDIDAN
Sbjct: 416 KSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDAN 475
Query: 926 GILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIER 985
GIL V+A +K TGKE KITIT G LS ++IER
Sbjct: 476 GILTVSAKDKGTGKEQKITITASSG---------------------------LSDDEIER 508
Query: 986 MVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
MV DAE+Y AED+K+K I AKN E Y ++++
Sbjct: 509 MVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKS 543
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 659 bits (1703), Expect = 0.0
Identities = 266/523 (50%), Positives = 349/523 (66%), Gaps = 40/523 (7%)
Query: 101 ILK--KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAA 155
IL+ KK +ED L KV E +I PAYFN + ++TKD+G IAGL VLRIINEPTAA
Sbjct: 117 ILQKLKKDAEDYLGEKV---TEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 215
A+AYGLDKK G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG
Sbjct: 174 ALAYGLDKK-----------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGG 222
Query: 216 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FE 274
+DFD R++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFI 279
Query: 275 GVD------FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 328
D +TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+
Sbjct: 280 TADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRM 339
Query: 329 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI 388
P VQ+L+++FF GKE NK +NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGI
Sbjct: 340 PAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGI 394
Query: 389 ETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTS 448
ET GGVMT LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+F LT
Sbjct: 395 ETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTG 454
Query: 449 IPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAE 508
IPPAPRGVPQIEVTFDIDANGI++V+A +K TGKE ITIT G LS E+IERMV DAE
Sbjct: 455 IPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAE 513
Query: 509 KYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDA 568
ED+K+K ++ A+N +S + + T+++ L DK+ E+ +I ++ + L
Sbjct: 514 ANAEEDKKRKELVEARNQADSLIYQTEKTLKE--LGDKVPADEKEKIEAAIKELKEALKG 571
Query: 569 NQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPG 611
+KE + K +EL + +YQ + A G A
Sbjct: 572 E---DKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAK 611
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 542 bits (1400), Expect = 0.0
Identities = 207/390 (53%), Positives = 267/390 (68%), Gaps = 42/390 (10%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG+DFD R++++ EFK++
Sbjct: 183 GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENG 242
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEGVD------FYTSITRARFE 745
DL +K AL+RL+ A E+AK LSS+ Q I +L F D +TRA+FE
Sbjct: 243 IDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFITADASGPKHLEIKLTRAKFE 299
Query: 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 805
EL DL T+EP +++L+DA + + I +++LVGGSTR+P VQ+L+++FF GKE NK +
Sbjct: 300 ELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGV 358
Query: 806 NPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTK 865
NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK
Sbjct: 359 NPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTK 414
Query: 866 QTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDAN 925
++Q F+T +DNQP V I V +GER M DN LG+F LT IPPAPRGVPQIEVTFDIDAN
Sbjct: 415 KSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDAN 474
Query: 926 GILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIER 985
GI++V+A +K TGKE ITIT S+G LS E+IER
Sbjct: 475 GIVHVSAKDKGTGKEQSITITA--------------SSG-------------LSDEEIER 507
Query: 986 MVNDAEKYKAEDEKQKAVISAKNSLESYCF 1015
MV DAE ED+K+K ++ A+N +S +
Sbjct: 508 MVKDAEANAEEDKKRKELVEARNQADSLIY 537
|
Length = 627 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 262/501 (52%), Positives = 340/501 (67%), Gaps = 31/501 (6%)
Query: 104 KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160
KK +E L KV E +I PAYFN + ++TKD+G IAGL VLRIINEPTAAA+AYG
Sbjct: 119 KKDAEAYLGEKV---TEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 175
Query: 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220
LDK + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLGG+DFD
Sbjct: 176 LDK----------SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQ 225
Query: 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD--- 277
R+++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 226 RIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPK 285
Query: 278 -FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 336
++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++
Sbjct: 286 HLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVK 345
Query: 337 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT 396
DFF GKE NKS+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT
Sbjct: 346 DFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMT 400
Query: 397 ALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456
LI+RNTTIPTK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPRGV
Sbjct: 401 KLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGV 460
Query: 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEK 516
PQIEVTFDIDANGIL+V+A +K TGKE ITIT G LS+E+IERMV +AE ED+K
Sbjct: 461 PQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKK 519
Query: 517 QKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEE 576
+K I A+N+ +S + + T+++ DK+ E+ +I ++ + L + EE
Sbjct: 520 RKEEIEARNNADSLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEE 574
Query: 577 FEHKQKELEAICNPIITKLYQ 597
+ K +EL+ + +YQ
Sbjct: 575 IKAKTEELQQALQKLAEAMYQ 595
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 553 bits (1428), Expect = 0.0
Identities = 259/496 (52%), Positives = 344/496 (69%), Gaps = 28/496 (5%)
Query: 104 KKTSEDILRKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGL 161
K+ +E L + + +I PAYFN + ++TKD+ IAGLNVLR+INEPTAAA+AYGL
Sbjct: 109 KEDAEAYL--GEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL 166
Query: 162 DKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 221
DK E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLGG+DFDN
Sbjct: 167 DKG-----------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNA 215
Query: 222 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 281
++++ V EFK K DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D
Sbjct: 216 LIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKE 275
Query: 282 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 341
+TRA+FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF G
Sbjct: 276 LTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-G 334
Query: 342 KELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKR 401
KE KSINPDEAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+R
Sbjct: 335 KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIER 390
Query: 402 NTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEV 461
NTTIP K++Q F+T +D Q V I V++GER M DN LG+FEL IPPAPRGVPQIEV
Sbjct: 391 NTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEV 450
Query: 462 TFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVI 521
TFDIDANGILNVTA + TGKE ITI G LS E+IERMV DAE A D+K + ++
Sbjct: 451 TFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELV 509
Query: 522 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQ 581
A+N ES ++++ +++ K+S+ E+ +I + D+ + L+ EKEE + K
Sbjct: 510 EARNEAESLIYSLEKALKEI---VKVSEEEKEKIEEAITDLEEALE----GEKEEIKAKI 562
Query: 582 KELEAICNPIITKLYQ 597
+EL+ + + K YQ
Sbjct: 563 EELQEVTQKLAEKKYQ 578
|
Length = 579 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 521 bits (1344), Expect = e-177
Identities = 214/245 (87%), Positives = 228/245 (93%), Gaps = 9/245 (3%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKK G GERNVL
Sbjct: 141 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK---------GGGERNVL 191
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK+KKD++ N
Sbjct: 192 IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGN 251
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL ADLFRGT+EP
Sbjct: 252 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCADLFRGTLEP 311
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 312 VEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 371
Query: 362 AAILH 366
AAIL
Sbjct: 372 AAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 520 bits (1341), Expect = e-173
Identities = 242/490 (49%), Positives = 326/490 (66%), Gaps = 26/490 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF + ++TKD+GTIAGL VLRIINEPTAAA+AYGLDK+ E+ +L
Sbjct: 140 VPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ----------DQEQLIL 189
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++ DL+ +
Sbjct: 190 VFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQD 249
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLF 295
K AL+RLR A E+AK LSS SI + F D +TRA+FEEL DL
Sbjct: 250 KMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEELTKDLV 307
Query: 296 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 355
T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NPDEAVA
Sbjct: 308 EATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVA 367
Query: 356 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 415
GAA+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++Q F+T
Sbjct: 368 LGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFST 423
Query: 416 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 475
+D Q V I V +GERAM KDN LGKF LT IPPAPRGVPQIEV+F+ID NGIL V+A
Sbjct: 424 ATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSA 483
Query: 476 IEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMK 535
++ TG+E I ITN G LS +IERM +AEKY ED ++K +I KN +S ++ +
Sbjct: 484 QDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYE 542
Query: 536 STVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKL 595
ST+++ + IS+ + + K ++ + EE + + +E + I ++
Sbjct: 543 STLKEN--GELISEELKQRAEQKVE-QLEAALTDPNISLEELKQQLEEFQQALLAIGAEV 599
Query: 596 YQGSGGAPGG 605
YQ G
Sbjct: 600 YQQGGSQTTD 609
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 519 bits (1338), Expect = e-173
Identities = 253/483 (52%), Positives = 333/483 (68%), Gaps = 28/483 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+G IAGL VLRIINEPTAA++AYGLDKK T +L
Sbjct: 142 VPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNET-----------IL 190
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+ +
Sbjct: 191 VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKD 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLFRG 297
++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 251 RQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINR 310
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA G
Sbjct: 311 CRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIG 369
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++ F+T
Sbjct: 370 AAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAV 425
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
DNQ V I V +GER + KDN LG F L IPPAPRGVPQIEVTFDIDANGIL+VTA +
Sbjct: 426 DNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKD 485
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K TGKE ITI L K+++ERMV +AEK AED++++ I KN ES C+ +
Sbjct: 486 KGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQ 544
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKELEAICNPIITKLY 596
+++ LKDKIS+ ++ +I ++IK L A Q E + +EL+ I ++Y
Sbjct: 545 LKE--LKDKISEEKKEKI----ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVY 598
Query: 597 QGS 599
+
Sbjct: 599 SST 601
|
Length = 621 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 516 bits (1330), Expect = e-171
Identities = 252/503 (50%), Positives = 347/503 (68%), Gaps = 30/503 (5%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L + Q +PAYFN S ++TKD+G IAGL+VLRIINEPTAAA+A+G+DK
Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
G T + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++
Sbjct: 223 NDGKT-----------IAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------ 277
N+ + EFK++ DL +K AL+RLR A E AK LSS TQ EI+ F D
Sbjct: 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKH 329
Query: 278 FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 337
++RA+ EEL DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++
Sbjct: 330 LQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKK 389
Query: 338 FFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTA 397
F GKE +K +NPDEAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV T
Sbjct: 390 IF-GKEPSKGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTR 444
Query: 398 LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457
LI RNTTIPTK++Q F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRGVP
Sbjct: 445 LINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVP 504
Query: 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQ 517
QIEVTFD+DANGI+N++A++KSTGK+ +ITI + G LS E+IE+MV +AE+YK +DEK+
Sbjct: 505 QIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKK 563
Query: 518 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEF 577
K ++ AKN E+ ++++ + D LKDKISDA++ ++ K + L + + +
Sbjct: 564 KELVDAKNEAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSEDV---DSI 618
Query: 578 EHKQKELEAICNPIITKLYQGSG 600
+ K K+L+ I + Y+
Sbjct: 619 KDKTKQLQEASWKISQQAYKQGN 641
|
Length = 663 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 489 bits (1262), Expect = e-162
Identities = 210/393 (53%), Positives = 268/393 (68%), Gaps = 36/393 (9%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLGG+DFD R+++ EF
Sbjct: 176 LDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEF 235
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRAR 743
K++ DL+ +K AL+RL+ A E+AK LSS I + + ++TRA+
Sbjct: 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295
Query: 744 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP VQ+L++DFF GKE NK
Sbjct: 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNK 354
Query: 804 SINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIP 863
S+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIP
Sbjct: 355 SVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 410
Query: 864 TKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDID 923
TK++Q F+T +DNQP V I V +GER M DN LG+FELT IPPAPRGVPQIEVTFDID
Sbjct: 411 TKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDID 470
Query: 924 ANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDI 983
ANGIL+V+A +K TGKE ITIT G LS+E+I
Sbjct: 471 ANGILHVSAKDKGTGKEQSITITASSG---------------------------LSEEEI 503
Query: 984 ERMVNDAEKYKAEDEKQKAVISAKNSLESYCFN 1016
ERMV +AE ED+K+K I A+N+ +S +
Sbjct: 504 ERMVKEAEANAEEDKKRKEEIEARNNADSLAYQ 536
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 484 bits (1247), Expect = e-159
Identities = 237/513 (46%), Positives = 322/513 (62%), Gaps = 28/513 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S +TKD+G IAGL VLRIINEPTAA++AYG +KK T +L
Sbjct: 179 VPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNET-----------IL 227
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL +
Sbjct: 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKD 287
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLFRG 297
K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 288 KQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDR 347
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA G
Sbjct: 348 CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTVNPDEVVALG 406
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T +
Sbjct: 407 AAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAA 462
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
D Q V I V +GER +DN LG F L IPPAPRGVPQIEV FDIDANGIL+V+A +
Sbjct: 463 DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATD 522
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K TGK+ ITIT L K+++ERMV +AEK+ ED++++ + KN +S + +
Sbjct: 523 KGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQ 581
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAE-KEEFEHKQKELEAICNPIITKLY 596
+++ L DK+ + ++ K ++ + + + K+ +E+ I LY
Sbjct: 582 LKE--LGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQ----SLY 635
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIE 629
G G AG+ S + G I+
Sbjct: 636 NQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVID 668
|
Length = 673 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 466 bits (1201), Expect = e-152
Identities = 208/458 (45%), Positives = 294/458 (64%), Gaps = 23/458 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++T+D+G IAGL V RI+NEPTAAA+AYGLD+ S + VL
Sbjct: 142 VPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDR-----------SSSQTVL 190
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K DL +
Sbjct: 191 VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRD 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLFRG 297
++AL+RL A E+AK LS + I + + D T + R +FE L DL
Sbjct: 251 RQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDR 310
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
+ PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NPDE VA G
Sbjct: 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVG 369
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AA+QA IL G E++DLLLLDVTPLSLG+ET GGVM LI RNTTIP +++ F+T
Sbjct: 370 AAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSE 425
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
+NQ V I V++GER M DN LG+F+L+ IPPAPRGVPQ++V FDIDANGIL V+A +
Sbjct: 426 NNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATD 485
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
++TG+E +TI LS++++ RM+ +AE ED +++ I +N + +
Sbjct: 486 RTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERR 544
Query: 538 VEDEKLKDKISDAERTQ--ILDKCNDVIKWLDANQLAE 573
+ D L+ AER + + DV L+ + E
Sbjct: 545 LRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
|
Length = 668 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 455 bits (1172), Expect = e-149
Identities = 209/389 (53%), Positives = 267/389 (68%), Gaps = 32/389 (8%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLGG+DFDN ++++ V EFK K
Sbjct: 169 GKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKG 228
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADL 751
DL ++K AL+RLR A E+AK LSS+TQ SI + S+ +D +TRA+FEEL DL
Sbjct: 229 GIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDL 288
Query: 752 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 811
T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF GKE KSINPDEAV
Sbjct: 289 LERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAV 347
Query: 812 AYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFT 871
A GAA+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+RNTTIP K++Q F+
Sbjct: 348 ALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 872 TYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVT 931
T +D Q V I V++GER M DN LG+FEL IPPAPRGVPQIEVTFDIDANGILNVT
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 932 AIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAE 991
A + TGKE ITI G LS E+IERMV DAE
Sbjct: 464 AKDLGTGKEQSITIKASSG---------------------------LSDEEIERMVEDAE 496
Query: 992 KYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
A D+K + ++ A+N ES ++++
Sbjct: 497 ANAALDKKFRELVEARNEAESLIYSLEKA 525
|
Length = 579 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 443 bits (1141), Expect = e-147
Identities = 178/193 (92%), Positives = 188/193 (97%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK
Sbjct: 184 GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRK 243
Query: 691 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+DFYTSITRARFEEL AD
Sbjct: 244 HKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCAD 303
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA
Sbjct: 304 LFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 363
Query: 811 VAYGAAVQAAILH 823
VAYGAAVQAAIL
Sbjct: 364 VAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 436 bits (1123), Expect = e-141
Identities = 200/392 (51%), Positives = 261/392 (66%), Gaps = 39/392 (9%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLGG+DFDN +V+ V+ F+++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGI 244
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEEL 747
DL+ +K AL+RLR A E+AK LSS SI + F D +TRA+FEEL
Sbjct: 245 DLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FITADETGPKHLEMELTRAKFEEL 302
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL T+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NP
Sbjct: 303 TKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNP 362
Query: 808 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867
DEAVA GAA+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++
Sbjct: 363 DEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418
Query: 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGI 927
Q F+T +D Q V I V +GERAM KDN LGKF LT IPPAPRGVPQIEV+F+ID NGI
Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478
Query: 928 LNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMV 987
L V+A ++ TG+E I ITN G LS +IERM
Sbjct: 479 LKVSAQDQGTGREQSIRITN---------------------------TGGLSSNEIERMR 511
Query: 988 NDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
+AEKY ED ++K +I KN +S ++ +S
Sbjct: 512 QEAEKYAEEDRRRKQLIELKNQADSLLYSYES 543
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 434 bits (1118), Expect = e-140
Identities = 205/383 (53%), Positives = 263/383 (68%), Gaps = 36/383 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+DFD ++VN ++EFK+K DL+
Sbjct: 189 ILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLS 248
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELNADLF 752
+++AL+RL A E+AK LS+ TQ I I + G ++TRA+FEEL +DL
Sbjct: 249 KDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLI 308
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA
Sbjct: 309 NRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVA 367
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAAVQA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++ F+T
Sbjct: 368 IGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFST 423
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
DNQ V I V +GER + KDN LG F L IPPAPRGVPQIEVTFDIDANGIL+VTA
Sbjct: 424 AVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTA 483
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K TGKE ITI ST L K+++ERMV +AEK
Sbjct: 484 KDKGTGKEQSITIQG-------------AST--------------LPKDEVERMVKEAEK 516
Query: 993 YKAEDEKQKAVISAKNSLESYCF 1015
AED++++ I KN ES C+
Sbjct: 517 NAAEDKEKREKIDLKNQAESLCY 539
|
Length = 621 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 422 bits (1087), Expect = e-136
Identities = 188/468 (40%), Positives = 281/468 (60%), Gaps = 49/468 (10%)
Query: 100 DILK--KKTSEDILRKVDGQNEGLI---PAYFNISSVKSTKDSGTIAGLNVLRIINEPTA 154
+ILK ++ +E+ L G+ +G + PAYF+ + ++TKD+ +AGLNVLR++NEPTA
Sbjct: 132 EILKALRQRAEETL---GGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTA 188
Query: 155 AAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 214
AAIAYGLD +G E + ++DLGGGTFD+SIL + G+FEV +T GD+ LG
Sbjct: 189 AAIAYGLD----------SGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALG 237
Query: 215 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 274
G+DFD+ + + ++ + L + R L A AK LS + + + +L++
Sbjct: 238 GDDFDHLLADWILE--QAGLSPRLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 275 GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 334
G ITR +F L A L + T+ ++LRDA ++ ++ ++V+VGGSTR+P V++
Sbjct: 293 G-----EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 335 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 394
+ +FF G+ SI+PD+ VA GAA+QA IL G+K + D+LLLDV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 395 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPR 454
+ +I RNTTIP + Q FTT+ D Q + I V +GER + D L +FEL IPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 455 GVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 514
G +I VTF +DA+G+L+VTA+EKSTG E I + G L+ ++I RM+ D+ + ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 515 -------EKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
E++ + A+ LE+ + D L +S AER I
Sbjct: 524 MQARALAEQK---VEAERVLEAL---QAALAADGDL---LSAAERAAI 562
|
Length = 616 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 421 bits (1085), Expect = e-135
Identities = 199/390 (51%), Positives = 270/390 (69%), Gaps = 40/390 (10%)
Query: 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 694
+ + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGEDFD R++N+ + EFK++ D
Sbjct: 226 KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGID 285
Query: 695 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELN 748
L +K AL+RLR A E AK LSS TQ EI+ F D ++RA+ EEL
Sbjct: 286 LKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
DL + T+EP EK ++DA + K +++D++LVGG TR+PKV + ++ F GKE +K +NPD
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPD 402
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868
EAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV T LI RNTTIPTK++Q
Sbjct: 403 EAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGIL 928
F+T +DNQ V I+V++GER M DN LLG+F+L IPPAPRGVPQIEVTFD+DANGI+
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 929 NVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988
N++A++KSTGK+ +ITI + G LS E+IE+MV
Sbjct: 519 NISAVDKSTGKKQEITIQSS---------------------------GGLSDEEIEKMVK 551
Query: 989 DAEKYKAEDEKQKAVISAKNSLESYCFNMK 1018
+AE+YK +DEK+K ++ AKN E+ ++++
Sbjct: 552 EAEEYKEQDEKKKELVDAKNEAETLIYSVE 581
|
Length = 663 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 409 bits (1052), Expect = e-134
Identities = 160/260 (61%), Positives = 205/260 (78%), Gaps = 10/260 (3%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+ +E L K +PAYFN + ++TKD+GTIAGLNV+RIINEPTAAAIAYGLDK
Sbjct: 125 KEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGEDFD R++
Sbjct: 185 K----------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 234
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
HF++ FK+K+ KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G DF ++T
Sbjct: 235 EHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLT 294
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
RA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FFNGKE
Sbjct: 295 RAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKE 354
Query: 344 LNKSINPDEAVAYGAAVQAA 363
++ INPDEAVAYGAAVQA
Sbjct: 355 PSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 408 bits (1052), Expect = e-131
Identities = 179/406 (44%), Positives = 247/406 (60%), Gaps = 27/406 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF+ + ++TKD+ +AGLNVLR++NEPTAAA+AYGLDK + E
Sbjct: 136 VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK-----------ASEGIYA 184
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK---DL 238
++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 185 VYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQLGISA 237
Query: 239 TTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGT 298
N R L A AK L+ S+E+D +G DF +TR FE L L + T
Sbjct: 238 DLNPEDQRLLLQAARAAKEALT--DAESVEVDFTLDGKDFKGKLTRDEFEALIQPLVQKT 295
Query: 299 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 358
+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+ VA GA
Sbjct: 296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGA 354
Query: 359 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 418
A+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q FTTY D
Sbjct: 355 AIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKD 412
Query: 419 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEK 478
Q ++I V +GER + +D L +FEL IPP G +I VTF +DA+G+L V+A E+
Sbjct: 413 GQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQ 472
Query: 479 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAK 524
STG E I + G LS E+IERM+ D+ K+ ED +A+ K
Sbjct: 473 STGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYARALAEQK 517
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 397 bits (1022), Expect = e-126
Identities = 211/456 (46%), Positives = 307/456 (67%), Gaps = 24/456 (5%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E+ L PAYFN + ++TKD+GTIAGLNV+R++NEPTAAA+AYG+DK
Sbjct: 149 KETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDK 208
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
S + ++DLGGGTFD+S+L I G+FEVK+T GDTHLGGEDFD +
Sbjct: 209 TKDSL-----------IAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALS 257
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FY 279
++ ++EF++ DL+ + AL+R+R A E+AK LSS+ + + + + D
Sbjct: 258 DYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQ 317
Query: 280 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 339
I+R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG TR+PKV + ++ FF
Sbjct: 318 MHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF 377
Query: 340 NGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALI 399
K+ + +NPDEAVA GAA +L GD V+ L+LLDVTPLSLGIET GGV T +I
Sbjct: 378 -QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMI 432
Query: 400 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 459
+NTTIPTK++QTF+T +DNQ V I+V++GER M DN ++G+F+L IPPAPRGVPQI
Sbjct: 433 PKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQI 492
Query: 460 EVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKA 519
EVTFDIDANGI +VTA +K+TGK ITIT + G LSKE IE+M+ D+E++ D ++
Sbjct: 493 EVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRE 551
Query: 520 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
++ +N+ E+ + + + K +SDAE+ +
Sbjct: 552 LVEVRNNAETQLTTAERQLGEWKY---VSDAEKENV 584
|
Length = 657 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 393 bits (1013), Expect = e-124
Identities = 172/385 (44%), Positives = 243/385 (63%), Gaps = 36/385 (9%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG DFD R+V+ ++F K
Sbjct: 184 SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKE 243
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 747
DL +++AL+RL A E+AK LS + I + + D T + R +FE L
Sbjct: 244 GIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESL 303
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL + PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NP
Sbjct: 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNP 362
Query: 808 DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867
DE VA GAA+QA IL G E++DLLLLDVTPLSLG+ET GGVM LI RNTTIP +++
Sbjct: 363 DEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRS 418
Query: 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGI 927
F+T +NQ V I V++GER M DN LG+F+L+ IPPAPRGVPQ++V FDIDANGI
Sbjct: 419 DVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGI 478
Query: 928 LNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMV 987
L V+A +++TG+E +TI G LS++++ RM+
Sbjct: 479 LQVSATDRTTGREQSVTI-----------------QGAST----------LSEQEVNRMI 511
Query: 988 NDAEKYKAEDEKQKAVISAKNSLES 1012
+AE ED +++ I +N +
Sbjct: 512 QEAEAKADEDRRRRERIEKRNRALT 536
|
Length = 668 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 391 bits (1005), Expect = e-123
Identities = 192/383 (50%), Positives = 252/383 (65%), Gaps = 36/383 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FK+ DL
Sbjct: 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLL 285
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 752
+K+AL+RL A E+AK LSS TQ SI + + D T++TRA+FEEL +DL
Sbjct: 286 KDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLL 345
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA
Sbjct: 346 DRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTVNPDEVVA 404
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAAVQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T
Sbjct: 405 LGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFST 460
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
+D Q V I V +GER +DN LG F L IPPAPRGVPQIEV FDIDANGIL+V+A
Sbjct: 461 AADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA 520
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K TGK+ ITIT ST L K+++ERMV +AEK
Sbjct: 521 TDKGTGKKQDITITG-------------AST--------------LPKDEVERMVQEAEK 553
Query: 993 YKAEDEKQKAVISAKNSLESYCF 1015
+ ED++++ + KN +S +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVY 576
|
Length = 673 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (896), Expect = e-108
Identities = 145/374 (38%), Positives = 217/374 (58%), Gaps = 40/374 (10%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+DFD+ + + ++ +
Sbjct: 200 EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE--QAGLSP 257
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
L + R L A AK LS + + + +L++G ITR +F L A L +
Sbjct: 258 RLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQG-----EITREQFNALIAPLVK 309
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +FF G+ SI+PD+ VA
Sbjct: 310 RTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAI 368
Query: 814 GAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTY 873
GAA+QA IL G+K + D+LLLDV PLSLG+ET GG++ +I RNTTIP + Q FTT+
Sbjct: 369 GAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTF 426
Query: 874 SDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAI 933
D Q + I V +GER + D L +FEL IPP G +I VTF +DA+G+L+VTA+
Sbjct: 427 KDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAM 486
Query: 934 EKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKY 993
EKSTG E I + S G L+ ++I RM+ D+ +
Sbjct: 487 EKSTGVEASIQVKP--------------SYG-------------LTDDEIARMLKDSMSH 519
Query: 994 KAEDEKQKAVISAK 1007
ED + +A+ K
Sbjct: 520 AEEDMQARALAEQK 533
|
Length = 616 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 333 bits (857), Expect = e-105
Identities = 122/188 (64%), Positives = 159/188 (84%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGEDFD R++ HF++ FK+K+
Sbjct: 187 GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHG 246
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G DF ++TRA+FEELN DLF
Sbjct: 247 KDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLF 306
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FFNGKE ++ INPDEAVA
Sbjct: 307 KKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVA 366
Query: 813 YGAAVQAA 820
YGAAVQA
Sbjct: 367 YGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-104
Identities = 152/377 (40%), Positives = 209/377 (55%), Gaps = 42/377 (11%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD+ + K+
Sbjct: 180 EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI-------LKQ 232
Query: 694 ---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
N R L A AK L+ S+E+D +G DF +TR FE L
Sbjct: 233 LGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFTLDGKDFKGKLTRDEFEALIQP 290
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
L + T+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+
Sbjct: 291 LVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQV 349
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q F
Sbjct: 350 VALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNV 930
TTY D Q ++I V +GER + +D L +FEL IPP G +I VTF +DA+G+L V
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467
Query: 931 TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDA 990
+A E+STG E I + G LS E+IERM+ D+
Sbjct: 468 SAQEQSTGVEQSIQVKPSYG---------------------------LSDEEIERMLKDS 500
Query: 991 EKYKAEDEKQKAVISAK 1007
K+ ED +A+ K
Sbjct: 501 FKHAEEDMYARALAEQK 517
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 331 bits (851), Expect = e-104
Identities = 123/242 (50%), Positives = 167/242 (69%), Gaps = 10/242 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN + ++TK++ IAGLNV+R+INEPTAAA+AYGLDKK R +L
Sbjct: 138 VPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK---------DEKGRTIL 188
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK K DL +
Sbjct: 189 VFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLD 248
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL L T++
Sbjct: 249 PRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDL 308
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PDEAVA GAA+
Sbjct: 309 VERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPDEAVALGAAIY 367
Query: 362 AA 363
AA
Sbjct: 368 AA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-102
Identities = 141/274 (51%), Positives = 188/274 (68%), Gaps = 24/274 (8%)
Query: 101 ILKK--KTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAA 155
IL+K + +E L KV E +I PAYFN S ++TKD+G IAGL VLRIINEPTAA
Sbjct: 118 ILQKLKEDAEAYLGEKV---TEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 174
Query: 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 215
A+AYGLDKK G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG
Sbjct: 175 ALAYGLDKK-----------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGG 223
Query: 216 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 275
+DFD R+++ V+EFK++ DL +K AL+RL+ A E+AK LSS T+ I + +
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 276 VD----FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 331
++TRA+FEEL DL T+EPV+++L+DAK+ + I +++LVGGSTRIP V
Sbjct: 284 ATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAV 343
Query: 332 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365
Q+L+++ F GKE NK +NPDE VA GAA+Q +L
Sbjct: 344 QELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 329 bits (844), Expect = e-100
Identities = 172/380 (45%), Positives = 250/380 (65%), Gaps = 36/380 (9%)
Query: 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 696
+ ++DLGGGTFD+S+L I G+FEVK+T GDTHLGGEDFD + ++ ++EF++ DL+
Sbjct: 214 IAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLS 273
Query: 697 TNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELNADLF 752
+ AL+R+R A E+AK LSS+ + + + + D I+R++FE + L
Sbjct: 274 KERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLI 333
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
++ P ++ ++DA ++ +I+D+VLVGG TR+PKV + ++ FF K+ + +NPDEAVA
Sbjct: 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVA 392
Query: 813 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872
GAA +L GD V+ L+LLDVTPLSLGIET GGV T +I +NTTIPTK++QTF+T
Sbjct: 393 LGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFST 448
Query: 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTA 932
+DNQ V I+V++GER M DN ++G+F+L IPPAPRGVPQIEVTFDIDANGI +VTA
Sbjct: 449 AADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTA 508
Query: 933 IEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992
+K+TGK ITIT + G LSKE IE+M+ D+E+
Sbjct: 509 KDKATGKTQNITITAN---------------------------GGLSKEQIEQMIRDSEQ 541
Query: 993 YKAEDEKQKAVISAKNSLES 1012
+ D ++ ++ +N+ E+
Sbjct: 542 HAEADRVKRELVEVRNNAET 561
|
Length = 657 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 3e-92
Identities = 135/266 (50%), Positives = 180/266 (67%), Gaps = 16/266 (6%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L K +PAYFN S ++TKD+G IAGLNVLR+INEPTAAA+AYGLDK
Sbjct: 124 KETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDK 183
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
K + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGEDFDN ++
Sbjct: 184 KDDKV-----------IAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALL 232
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FY 279
H V+EFK++ DLT + AL+RLR A E+AK LSSS Q I + +
Sbjct: 233 RHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLN 292
Query: 280 TSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 339
+TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F
Sbjct: 293 MKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF 352
Query: 340 NGKELNKSINPDEAVAYGAAVQAAIL 365
GKE +K +NPDEAVA GAA+Q +L
Sbjct: 353 -GKEPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 4e-86
Identities = 135/262 (51%), Positives = 187/262 (71%), Gaps = 11/262 (4%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
KKT+E L K + +PAYFN S ++TKD+GT+AGL VLRIINEPTAAA+AYG+DK
Sbjct: 123 KKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDK 182
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGEDFDN +V
Sbjct: 183 R----------KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIV 232
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 283
+ ++EFKRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L +IT
Sbjct: 233 QYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITIT 292
Query: 284 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343
R FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q+ F GK+
Sbjct: 293 RREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKK 351
Query: 344 LNKSINPDEAVAYGAAVQAAIL 365
+KS+NPDEAVA GAA+Q +IL
Sbjct: 352 PSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 1e-83
Identities = 94/192 (48%), Positives = 131/192 (68%), Gaps = 1/192 (0%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
++ R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLGG+DFDN + ++ ++FK
Sbjct: 179 KKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFK 238
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
K DL + RALRRL+ A E+AK LSSS +A+I + L G D +TR FEEL
Sbjct: 239 EKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELI 298
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
L T++ VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PD
Sbjct: 299 RPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPD 357
Query: 809 EAVAYGAAVQAA 820
EAVA GAA+ AA
Sbjct: 358 EAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 3e-79
Identities = 107/242 (44%), Positives = 148/242 (61%), Gaps = 16/242 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN K+TK +G +AGL V R+INEPTAAA+AYGL K E L
Sbjct: 114 VPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK----------DEETKFL 163
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGEDF + F++ K +
Sbjct: 164 VFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLK--KHGLDFEKLDP 221
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L RL A ERAKR LS +A + + EG + ++TR FEE+ L +P
Sbjct: 222 SE-LARLLRAAERAKRALSDQEEAEMSVR--IEGEELEYTLTREEFEEICQPLLERLRQP 278
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+E++LRDA++ + I +I+LVGG+TR+P V+KL+ F G+ +NPDE VA GAA+Q
Sbjct: 279 IERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQ 337
Query: 362 AA 363
A
Sbjct: 338 AG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 4e-79
Identities = 169/482 (35%), Positives = 254/482 (52%), Gaps = 46/482 (9%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PA+FN ++ + IAG VLR+I EPTAAA AYGL+K L
Sbjct: 148 VPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK--NQKGC---------YL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++DLGGGTFDVSIL I++GIF+V +T GD LGG D D + + +F DL +
Sbjct: 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF------DLPNS 250
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L+ ++AK TL+ + S D++ SI + E+L L T+
Sbjct: 251 IDTLQ----LAKKAKETLTY--KDSFNNDNI--------SINKQTLEQLILPLVERTINI 296
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
++ L A I ++LVGG+TRIP ++ L F L+ I+PD+AV +GAA+Q
Sbjct: 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAVVWGAALQ 353
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
A L + LL+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ
Sbjct: 354 AENL----IAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQT 409
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
G+ + +GER M D L +FEL +PP G + EVTF IDA+GIL+V+A EK +
Sbjct: 410 GIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISN 469
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541
+ I + + G + K +I+ M+ +A K D + + A E+ FN++ +
Sbjct: 470 TSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAI--A 526
Query: 542 KLKDKISDAERTQI---LDKCNDVIKWLDANQLAEK-EEFEHK-QKELEAICNPIITKLY 596
+L +S++E + I LD + + D + +EF+ K +K ++ N II L
Sbjct: 527 ELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLL 586
Query: 597 QG 598
+G
Sbjct: 587 KG 588
|
Length = 595 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 2e-75
Identities = 105/241 (43%), Positives = 144/241 (59%), Gaps = 22/241 (9%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYF+ + ++TKD+ +AGLNVLR++NEPTAAA+AYGLDKK E
Sbjct: 136 VPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK-----------EGIYA 184
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + + +KY +
Sbjct: 185 VYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL----KKYGLKSLIS 240
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
L +AK LS + + +E+ G DF +ITR FE+L L + T+
Sbjct: 241 DEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKLIDPLVKKTLNI 294
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+++LRDA + I ++LVGGSTRIP VQ+ + FF K L INPDE VA GAA+Q
Sbjct: 295 CKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVVAIGAALQ 353
Query: 362 A 362
A
Sbjct: 354 A 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 8e-75
Identities = 99/194 (51%), Positives = 138/194 (71%), Gaps = 5/194 (2%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLGG+DFD R+++ V+EFK++
Sbjct: 184 GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEG 243
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEELN 748
DL +K AL+RL+ A E+AK LSS T+ I + + ++TRA+FEEL
Sbjct: 244 IDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEELT 303
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
DL T+EPV+++L+DAK+ + I +++LVGGSTRIP VQ+L+++ F GKE NK +NPD
Sbjct: 304 EDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEPNKGVNPD 362
Query: 809 EAVAYGAAVQAAIL 822
E VA GAA+Q +L
Sbjct: 363 EVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-73
Identities = 108/244 (44%), Positives = 149/244 (61%), Gaps = 6/244 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P+YF + ++ D+ IAGLN LR++NE TA A+AYG+ K RNV
Sbjct: 143 VPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIYKTD-----LPEEEKPRNVA 197
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G + VSI+ G +V STA D +LGG DFD + HF +EFK KYK D+ +N
Sbjct: 198 FVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSN 257
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A RL ACE+ K+ LS++T+A + I+ L E D I R FEEL A L EP
Sbjct: 258 PKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEP 317
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+EK+L +A + K IH + +VGGSTRIP V++L+ F GKEL+ ++N DEAVA G A+Q
Sbjct: 318 LEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARGCALQ 376
Query: 362 AAIL 365
A+L
Sbjct: 377 CAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 5e-69
Identities = 105/242 (43%), Positives = 157/242 (64%), Gaps = 8/242 (3%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P YF+ + +++ AG NVLRII+EP+AAA+AYG+ G + G+ VL
Sbjct: 142 VPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI----GQDSPT----GKSYVL 193
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K+D+ N
Sbjct: 194 VYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWKQDVRGN 253
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF +EP
Sbjct: 254 ARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLFPKCLEP 313
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A GAA Q
Sbjct: 314 IEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIAIGAAKQ 373
Query: 362 AA 363
A
Sbjct: 374 AG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 8e-67
Identities = 97/195 (49%), Positives = 136/195 (69%), Gaps = 5/195 (2%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 691
++ + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGEDFDN ++ H V+EFK++
Sbjct: 184 KDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQ 243
Query: 692 KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD----FYTSITRARFEEL 747
DLT + AL+RLR A E+AK LSSS Q I + + +TRA+FE L
Sbjct: 244 GIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKFESL 303
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F GKE +K +NP
Sbjct: 304 VGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GKEPSKGVNP 362
Query: 808 DEAVAYGAAVQAAIL 822
DEAVA GAA+Q +L
Sbjct: 363 DEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 2e-64
Identities = 95/254 (37%), Positives = 147/254 (57%), Gaps = 19/254 (7%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P YF + ++ D+ +AGLNVL ++N+ TAAA+ Y LD++ + + + VL
Sbjct: 142 VPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRR-------FENNKPQYVL 194
Query: 182 IFDLGGGTFDVSILTI----------EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 231
+D+G G+ +++ EV D LGG +FD R+ +H +EF+
Sbjct: 195 FYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLAKEFE 254
Query: 232 RKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEE 289
K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF T ITRA FEE
Sbjct: 255 EKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDFKTKITRAEFEE 314
Query: 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 349
L ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L + K+L K +N
Sbjct: 315 LCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLGKHLN 374
Query: 350 PDEAVAYGAAVQAA 363
DEA A GAA AA
Sbjct: 375 ADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 9e-64
Identities = 111/251 (44%), Positives = 156/251 (62%), Gaps = 17/251 (6%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PA F+ +T + +AGL VLR+INEPTAAA+AYGL KK V NVL
Sbjct: 165 VPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALAYGLHKKQD---VF-------NVL 214
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K N
Sbjct: 215 VVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVPD-N 273
Query: 242 KRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNADLFR 296
K ++RLR A E AK TL ST S+ + L EG V F +TR FE LN DLF+
Sbjct: 274 KEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQ 333
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 356
+ P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ AV
Sbjct: 334 KILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELAVVT 392
Query: 357 GAAVQAAILHG 367
G A+QA I+ G
Sbjct: 393 GVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 8e-63
Identities = 99/195 (50%), Positives = 143/195 (73%), Gaps = 1/195 (0%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
I++ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGEDFDN +V + ++EF
Sbjct: 180 IDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
KRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L +ITR FE+L
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQL 299
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
+ + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q+ F GK+ +KS+NP
Sbjct: 300 RKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKKPSKSVNP 358
Query: 808 DEAVAYGAAVQAAIL 822
DEAVA GAA+Q +IL
Sbjct: 359 DEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 2e-60
Identities = 132/362 (36%), Positives = 195/362 (53%), Gaps = 33/362 (9%)
Query: 638 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 697
L++DLGGGTFDVSIL I++GIF+V +T GD LGG D D + + +F DL
Sbjct: 196 LVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF------DLPN 249
Query: 698 NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTME 757
+ L+ ++AK TL+ + S D++ SI + E+L L T+
Sbjct: 250 SIDTLQ----LAKKAKETLTY--KDSFNNDNI--------SINKQTLEQLILPLVERTIN 295
Query: 758 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 817
++ L A I ++LVGG+TRIP ++ L F L+ I+PD+AV +GAA+
Sbjct: 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAVVWGAAL 352
Query: 818 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 877
QA L + LL+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ
Sbjct: 353 QAENL----IAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQ 408
Query: 878 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 937
G+ + +GER M D L +FEL +PP G + EVTF IDA+GIL+V+A EK +
Sbjct: 409 TGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKIS 468
Query: 938 GKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDI---ERMVNDAEKYK 994
+ I + + G + + ++ K KI T RL +E + E ++ + E+
Sbjct: 469 NTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTT---RLLQEAVIEAEALIFNIERAI 525
Query: 995 AE 996
AE
Sbjct: 526 AE 527
|
Length = 595 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 3e-58
Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 694
RNV D+G + VSI+ G +V STA D +LGG DFD + HF +EFK KYK D
Sbjct: 194 RNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKID 253
Query: 695 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG 754
+ +N +A RL ACE+ K+ LS++T+A + I+ L E D I R FEEL A L
Sbjct: 254 VLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLER 313
Query: 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 814
EP+EK+L +A + K IH + +VGGSTRIP V++L+ F GKEL+ ++N DEAVA G
Sbjct: 314 VEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARG 372
Query: 815 AAVQAAIL 822
A+Q A+L
Sbjct: 373 CALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 8e-58
Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 21/297 (7%)
Query: 81 KAVSAQELSRGVKAIFTAPDILK------KKTSEDIL-RKVDGQNEGLIPAYFNISSVKS 133
V +E + I T ++ K+ +ED L +KV G +P +F+ ++
Sbjct: 97 GTVQEKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLS-VPTWFSDEQTEA 155
Query: 134 TKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193
+ AGL VL++I EP AA +AY + A +RNV++ D GG DVS
Sbjct: 156 LVKAAEAAGLPVLQLIPEPAAALLAYDAGEPTEDEA------LDRNVVVADFGGTRTDVS 209
Query: 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACE 253
++ + G++ + +TA D LGG+ D+ +V HF +EF +K K D TN RAL +LR E
Sbjct: 210 VIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESE 269
Query: 254 RAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDK 313
K+TLS+ST A+ ++SL EG+DF++SI R RFE L + +FR V ++ A +D
Sbjct: 270 ITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDA 329
Query: 314 AQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 363
I +++LVGG+ PK+ L F ++K+++P E VA G A+QA+
Sbjct: 330 LDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 9e-58
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 6/187 (3%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E L+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGEDF + F++ K
Sbjct: 159 ETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLK--KHGLDF 216
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
+ L RL A ERAKR LS +A + + EG + ++TR FEE+ L
Sbjct: 217 EKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEGEELEYTLTREEFEEICQPLLE 273
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
+P+E++LRDA++ + I +I+LVGG+TR+P V+KL+ F G+ +NPDE VA
Sbjct: 274 RLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF-GRFPLVHLNPDEVVAL 332
Query: 814 GAAVQAA 820
GAA+QA
Sbjct: 333 GAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 3e-57
Identities = 85/188 (45%), Positives = 126/188 (67%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
G+ VL++ LGG + DV+IL + G++ V +T+ D +LGGE F + + EFKRK+K
Sbjct: 188 GKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWK 247
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
+D+ N RA+ +L A E AK+ LS+ A+ ++SL+EG+DF S++RARFE L + LF
Sbjct: 248 QDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLF 307
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
+EP+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A
Sbjct: 308 PKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIA 367
Query: 813 YGAAVQAA 820
GAA QA
Sbjct: 368 IGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 189 bits (480), Expect = 1e-52
Identities = 88/242 (36%), Positives = 137/242 (56%), Gaps = 5/242 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P ++ + D+ IAGLN +RI+N+ TAA ++YG+ K T + R V
Sbjct: 141 VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFK----TDLPEGEEKPRIVA 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KYK D+ N
Sbjct: 197 FVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIREN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L EP
Sbjct: 257 PKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
V K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GAA
Sbjct: 317 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFI 375
Query: 362 AA 363
A
Sbjct: 376 CA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 7e-52
Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+++ E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+DFD + +
Sbjct: 175 LDKKK-EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLL--- 230
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+KY + L +AK LS + + +E+ G DF +ITR FE+L
Sbjct: 231 -KKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKL 283
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
L + T+ +++LRDA + I ++LVGGSTRIP VQ+ + FF K L INP
Sbjct: 284 IDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINP 342
Query: 808 DEAVAYGAAVQA 819
DE VA GAA+QA
Sbjct: 343 DEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 8e-52
Identities = 99/263 (37%), Positives = 152/263 (57%), Gaps = 6/263 (2%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+T+E L+K +P ++ + +S D+ IAGLN LR++NE TA A+AYG+ K
Sbjct: 125 KETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ E RNV+ D+G + VS+ G +V +TA DT LGG FD +V
Sbjct: 185 QDLPALEE----KPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSI 282
N+F +EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+ +D ++
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 342
R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF GK
Sbjct: 301 NRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GK 359
Query: 343 ELNKSINPDEAVAYGAAVQAAIL 365
E++ ++N DEAVA G A+Q AIL
Sbjct: 360 EVSTTLNADEAVARGCALQCAIL 382
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 1e-51
Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTI----------EDGIFEVKSTAGDTHLGGEDFDN 677
E + + VL +D+G G+ +++ EV D LGG +FD
Sbjct: 184 RFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDL 243
Query: 678 RMVNHFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF 735
R+ +H +EF+ K+K D+ TN RA+ +L RAK LS++++A + I+SL++ +DF
Sbjct: 244 RLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDDIDF 303
Query: 736 YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 795
T ITRA FEEL ADLF + P++K+L A + I + L+GG+TR+PKVQ+ L +
Sbjct: 304 KTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEA 363
Query: 796 FNGKELNKSINPDEAVAYGAAVQAA 820
K+L K +N DEA A GAA AA
Sbjct: 364 VGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 7e-49
Identities = 77/199 (38%), Positives = 120/199 (60%), Gaps = 7/199 (3%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
E+ + +RNV++ D GG DVS++ + G++ + +TA D LGG+ D+ +V HF +EF
Sbjct: 188 EDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFT 247
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
+K K D TN RAL +LR E K+TLS+ST A+ ++SL EG+DF++SI R RFE L
Sbjct: 248 KKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLA 307
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------EL 801
+ +FR V ++ A +D I +++LVGG+ PK+ L F +
Sbjct: 308 SAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITV 367
Query: 802 NKSINPDEAVAYGAAVQAA 820
+K+++P E VA G A+QA+
Sbjct: 368 SKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 2e-48
Identities = 86/194 (44%), Positives = 124/194 (63%), Gaps = 7/194 (3%)
Query: 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 695
NVL+ DLGGGT DVS+L + G+F ++ AG+ LGG+DF+ R++ + Q+ KY K
Sbjct: 212 NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVP 271
Query: 696 TTNKRALRRLRTACERAK--RTLSSSTQASIEIDSLFEG---VDFYTSITRARFEELNAD 750
NK ++RLR A E AK TL ST S+ + L EG V F +TR FE LN D
Sbjct: 272 D-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNED 330
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LF+ + P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ A
Sbjct: 331 LFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELA 389
Query: 811 VAYGAAVQAAILHG 824
V G A+QA I+ G
Sbjct: 390 VVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 172 bits (436), Expect = 8e-47
Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 19/272 (6%)
Query: 97 TAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAA 156
TA + LKK ++ ++ +P++F + +S D+ I GLN LR++N+ TA A
Sbjct: 127 TAENNLKKPVTDCVIS---------VPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVA 177
Query: 157 IAYGLDKKVGSTAVEYNGSGE--RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 214
+ YG+ K+ + E R V+ D+G F VS G +V TA D LG
Sbjct: 178 LNYGIYKQ------DLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLG 231
Query: 215 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLF 273
G++FD ++V HF EFK KYK D + RAL RL CE+ K+ +SS ST + I+
Sbjct: 232 GKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFM 291
Query: 274 EGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 333
D + R++FEEL ADL + P+ L + + + +VGG+TRIP V++
Sbjct: 292 NDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKE 351
Query: 334 LLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365
+ FF GK+++ ++N DEAVA G A+Q AIL
Sbjct: 352 RIAKFF-GKDVSTTLNADEAVARGCALQCAIL 382
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 3e-46
Identities = 96/263 (36%), Positives = 153/263 (58%), Gaps = 6/263 (2%)
Query: 104 KKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163
K+TSE+ L+K IP++F + +S + +AGLN LR++NE TA A+AYG+ K
Sbjct: 125 KETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYK 184
Query: 164 KVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223
+ E RNV+ D+G + VS+ G +V +T D +LGG +FD +V
Sbjct: 185 QDLPALDE----KPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSI 282
++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D + +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKM 300
Query: 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 342
RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF K
Sbjct: 301 NRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL-K 359
Query: 343 ELNKSINPDEAVAYGAAVQAAIL 365
+++ ++N DEAVA G A+Q AIL
Sbjct: 360 DISTTLNADEAVARGCALQCAIL 382
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 7e-43
Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 1/193 (0%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
E R V D+G ++ SI+ + G +V TA D H GG DFD + HF EF
Sbjct: 186 PEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEF 245
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
K KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL
Sbjct: 246 KTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEEL 305
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP 807
L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N
Sbjct: 306 VKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQ 364
Query: 808 DEAVAYGAAVQAA 820
DEA+A GAA A
Sbjct: 365 DEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 6e-40
Identities = 77/198 (38%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P +EE RNV+ D+G + VS+ G +V +TA DT LGG FD +VN+F +
Sbjct: 188 PALEEKP--RNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVNYFCE 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+ +D ++ R +F
Sbjct: 246 EFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTMNRGKF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E+ DL P+ L AK+ K I+ + +VGG+TRIP V++ + FF GKE++ +
Sbjct: 306 LEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GKEVSTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 142 bits (358), Expect = 2e-36
Identities = 77/198 (38%), Positives = 112/198 (56%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P+++E R V+ D+G F VS G +V TA D LGG++FD ++V HF
Sbjct: 188 PSLDEKP--RIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCA 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EFK KYK D + RAL RL CE+ K+ +SS ST + I+ D + R++F
Sbjct: 246 EFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
EEL ADL + P+ L + + + +VGG+TRIP V++ + FF GK+++ +
Sbjct: 306 EELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDVSTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 7e-35
Identities = 72/198 (36%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 626 PTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685
P ++E RNV+ D+G + VS+ G +V +T D +LGG +FD +V++F
Sbjct: 188 PALDEKP--RNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCD 245
Query: 686 EFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGVDFYTSITRARF 744
EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+ +D + + RA+F
Sbjct: 246 EFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQF 305
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E+L A L P++ + A + + I+ I +VGG+TRIP V++ + FF K+++ +
Sbjct: 306 EQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL-KDISTT 364
Query: 805 INPDEAVAYGAAVQAAIL 822
+N DEAVA G A+Q AIL
Sbjct: 365 LNADEAVARGCALQCAIL 382
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-15
Identities = 71/287 (24%), Positives = 97/287 (33%), Gaps = 84/287 (29%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AG + EP AAA+ Y E + E VL+ D+GGGT D S++ +
Sbjct: 149 AGFKDVEFQYEPIAAALDY-----------EQRLTREELVLVVDIGGGTSDFSLVRLGPS 197
Query: 201 IFEVKSTAGDT------HLGGEDFDNRMVNHFV----------QEFK------RKYKKDL 238
D +GG DFD R+ H V + Y DL
Sbjct: 198 RRGRADRRADILAHSGVRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADL 257
Query: 239 TT------------------------NKRALRRLRT------------ACERAKRTLSSS 262
T L RL T A E AK LSS
Sbjct: 258 ATWHKINFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQ 317
Query: 263 TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 322
+ I++D F V +TRA FE A V+++L A + I + L
Sbjct: 318 DETRIDLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLT 375
Query: 323 GGSTRIPKVQKLLQDFF------NGKELNKSINPDEAVAYGAAVQAA 363
GGS+ +P V++ F G +VA G A+ AA
Sbjct: 376 GGSSLVPAVRQAFAARFPAARIVEGDAF-------GSVASGLALAAA 415
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-13
Identities = 62/253 (24%), Positives = 86/253 (33%), Gaps = 73/253 (28%)
Query: 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT------HLGGEDFDNRMVNHFV- 684
+ E VL+ D+GGGT D S++ + D +GG DFD R+ H V
Sbjct: 172 TREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGVRIGGTDFDRRLSLHAVM 231
Query: 685 ---------QEFK------RKYKKDLTT------------------------NKRALRRL 705
+ Y DL T L RL
Sbjct: 232 PLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRELARDAVEPELLERL 291
Query: 706 RT------------ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
T A E AK LSS + I++D F V +TRA FE A
Sbjct: 292 ITVIEEELGHRLARAVEAAKIALSSQDETRIDLD--FVEVGLEAPVTRAEFEGAIAPDLE 349
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF------NGKELNKSINP 807
V+++L A + I + L GGS+ +P V++ F G
Sbjct: 350 RIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAF------ 403
Query: 808 DEAVAYGAAVQAA 820
+VA G A+ AA
Sbjct: 404 -GSVASGLALAAA 415
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 4e-08
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 55/255 (21%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERN 179
+P+ I+ V ++ D+ AG + +I EP AAAI GLD E G+
Sbjct: 97 VPS--GITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD------IFEPKGN---- 144
Query: 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 239
++ D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 145 -MVVDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN---- 190
Query: 240 TNKRALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 295
L RTA E K + S+ E +G D T + R E+ ++
Sbjct: 191 --------LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEV 239
Query: 296 RGTM-EPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQDFFNGKEL 344
R + EP+++ + K ++K A I D IVL GG + + +L+ + G +
Sbjct: 240 REALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPV 298
Query: 345 NKSINPDEAVAYGAA 359
+ +P VA GA
Sbjct: 299 RVAEDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-07
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 39/238 (16%)
Query: 146 LRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGI-FEV 204
L I+ EP AAA+ Y L + S ++ G+ L+ D GGGT D+++ + +
Sbjct: 178 LLIVLEPEAAAL-YCLKLLLISLNLK---PGDG-FLVCDAGGGTVDLTVYEVTSVEPLRL 232
Query: 205 K-STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT----NKRALRRLRTACERAKRTL 259
K AG L G F +R F + K + + + L E KR+
Sbjct: 233 KELAAGSGGLCGSTFVDR---AFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSF 289
Query: 260 SSSTQASIEIDSLFEGVDFYTSITRARFEELN----------ADLFRGTMEPVEKSLRDA 309
+ I S N LF +E + + +
Sbjct: 290 GGTDN-DTNIVLPGS---LALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE- 344
Query: 310 KMDKAQIHD----IVLVGGSTRIPKVQKLLQDFFNGKELNKSI----NPDEAVAYGAA 359
++++A+ D I LVGG P ++ L++ F + +P AV GA
Sbjct: 345 QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 6e-06
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 67/261 (25%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLD--KKVGSTAVEYNGSGE 177
+P+ I+ V ++ +++ AG + +I EP AAAI GL + VG+
Sbjct: 107 VPS--GITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGN---------- 154
Query: 178 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 237
++ D+GGGT +V+++++ GI +S + G++ D +V + +RKY
Sbjct: 155 ---MVVDIGGGTTEVAVISL-GGIVYSESIR----VAGDEMDEAIVQY----VRRKYN-- 200
Query: 238 LTTNKRALRRL----RTACERAKRTLSSSTQA----SIEIDSLFEGVDFYTSITRARFEE 289
L RTA E K + S+ S+E+ G D T + + E
Sbjct: 201 ----------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTGLPKTI--E 243
Query: 290 LNADLFRGTMEP--------VEKSLRDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQDF 338
++++ R + V+ L + A I D IVL GG + + KLL +
Sbjct: 244 ISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303
Query: 339 FNGKELNKSINPDEAVAYGAA 359
G ++ + +P VA G
Sbjct: 304 T-GLPVHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 292 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 347 SINPDEAVAYGAAVQAAILHGDKS 370
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 749 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 804 SINPDEAVAYGAAVQAAILHGDKS 827
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 37/217 (17%)
Query: 624 PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGI-FEVK-STAGDTHLGGEDFDNRMVN 681
++ G G L+ D GGGT D+++ + +K AG L G F +R
Sbjct: 197 ISLNLKPGDG---FLVCDAGGGTVDLTVYEVTSVEPLRLKELAAGSGGLCGSTFVDR--- 250
Query: 682 HFVQEFKRKYKKDLTT----NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 737
F + K + + + L E KR+ + I
Sbjct: 251 AFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDN-DTNIVLPGS---LAL 306
Query: 738 SITRARFEELN----------ADLFRGTMEPVEKSLRDAKMDKAQIHD----IVLVGGST 783
S N LF +E + + + ++++A+ D I LVGG
Sbjct: 307 SKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEE-QLEQAEKGDKVKYIFLVGGFG 365
Query: 784 RIPKVQKLLQDFFNGKELNKSI----NPDEAVAYGAA 816
P ++ L++ F + +P AV GA
Sbjct: 366 ESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-04
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 55/221 (24%)
Query: 611 GAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 670
GAG G ++ D+GGGT +++++++ GI KS +
Sbjct: 133 GAGLDIFEPKG---------------NMVVDIGGGTTEIAVISL-GGIVVSKS----IRV 172
Query: 671 GGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL----RTACERAKRTLSSSTQASIEI 726
GG+DFD ++ + +RKY L RTA E K + S+ E
Sbjct: 173 GGDDFDEAIIRY----VRRKYN------------LLIGERTA-EEIKIEIGSAYPLDEEE 215
Query: 727 DSLFEGVDFYTSITRARFEELNADLFRGTM-EPVEKSLRDAK--MDK------AQIHD-- 775
+G D T + R E+ ++ R + EP+++ + K ++K A I D
Sbjct: 216 TMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDEIVEAIKSVLEKTPPELAADILDRG 273
Query: 776 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 816
IVL GG + + +L+ + G + + +P VA GA
Sbjct: 274 IVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 24/116 (20%)
Query: 122 IPAYFNISSV--KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERN 179
IP I+SV ++ +++ AG + +I EP AAAI GLD + +G+
Sbjct: 102 IPT--GITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD------ISQPSGN---- 149
Query: 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
++ D+GGGT D+++L++ GI S + G+ FD ++ + ++KYK
Sbjct: 150 -MVVDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
|
Length = 336 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AGL VL +++EPTAAA LD + + D+GGGT +SI+
Sbjct: 119 AGLEVLHVLDEPTAAADVLQLD----------------DGGVVDIGGGTTGISIVKKGKV 162
Query: 201 IFEVKSTAGDTHL 213
I+ G TH+
Sbjct: 163 IYSADEPTGGTHM 175
|
Length = 277 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 141 AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200
AG+ VL +++EPTAAA + N + D+GGGT +SIL
Sbjct: 87 AGIEVLHVLDEPTAAAAVLQIK----------------NGAVVDVGGGTTGISILKKGKV 130
Query: 201 IFEVKSTAGDTHL 213
I+ G TH+
Sbjct: 131 IYSADEPTGGTHM 143
|
Length = 239 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 346
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 347 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 382
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 749 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 803
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 804 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 839
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
|
This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487 |
| >gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies) | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.002
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 597 QGSGGAPG--GFPGAPGA----GAP-PSGAPGAGPGP 626
G G PG G PG PG G P P GAPGA PGP
Sbjct: 24 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGA-PGP 59
|
Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 30/91 (32%)
Query: 133 STKDSGTI------AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLG 186
S D I AGL V +++EPTAAA G+D NG+ + D+G
Sbjct: 100 SEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----------NGA------VVDIG 143
Query: 187 GGTFDVSILTIEDGIFEVKSTA----GDTHL 213
GGT +SIL +DG +V +A G TH+
Sbjct: 144 GGTTGISIL--KDG--KVVYSADEPTGGTHM 170
|
Length = 267 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1023 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| KOG0100|consensus | 663 | 100.0 | ||
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| KOG0104|consensus | 902 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.97 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.97 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.96 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.94 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.94 | |
| PRK11678 | 450 | putative chaperone; Provisional | 99.94 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.93 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.84 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 99.83 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.81 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.78 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.75 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.74 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.71 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.7 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.59 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.57 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.57 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.51 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.5 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.49 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.32 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.3 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.27 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.24 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.24 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.99 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 98.91 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.91 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 98.86 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.77 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.71 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 98.68 | |
| PTZ00281 | 376 | actin; Provisional | 98.67 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.63 | |
| PTZ00452 | 375 | actin; Provisional | 98.61 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.54 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.35 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.35 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.28 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.26 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 98.23 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.17 | |
| KOG0679|consensus | 426 | 98.16 | ||
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 98.01 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.95 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 97.95 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 97.86 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 97.7 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 97.65 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 97.64 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 97.63 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 97.58 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.55 | |
| PTZ00281 | 376 | actin; Provisional | 97.37 | |
| PTZ00452 | 375 | actin; Provisional | 97.36 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.35 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.33 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.3 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.29 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 97.28 | |
| PTZ00004 | 378 | actin-2; Provisional | 97.25 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.19 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.17 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.16 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 96.97 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 96.84 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 96.83 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 96.66 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 96.66 | |
| KOG0676|consensus | 372 | 96.56 | ||
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.54 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 96.45 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.43 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.25 | |
| KOG0797|consensus | 618 | 96.08 | ||
| KOG0677|consensus | 389 | 96.01 | ||
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 95.75 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 95.63 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 95.4 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 95.1 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 95.09 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 95.0 | |
| PLN02669 | 556 | xylulokinase | 94.92 | |
| PRK15027 | 484 | xylulokinase; Provisional | 94.9 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 94.85 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 94.43 | |
| PRK15027 | 484 | xylulokinase; Provisional | 94.34 | |
| PLN02669 | 556 | xylulokinase | 94.33 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 94.25 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 93.95 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 93.94 | |
| PRK04123 | 548 | ribulokinase; Provisional | 93.93 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 93.84 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 93.75 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 93.56 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 93.54 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 93.49 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 93.46 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 93.3 | |
| PLN02295 | 512 | glycerol kinase | 92.94 | |
| KOG0679|consensus | 426 | 92.81 | ||
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 92.78 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 92.64 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 92.64 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 92.62 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 92.61 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 92.52 | |
| PRK04123 | 548 | ribulokinase; Provisional | 92.44 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 92.41 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 92.31 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 92.3 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 92.29 | |
| KOG2531|consensus | 545 | 92.29 | ||
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 92.23 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 92.22 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 92.01 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 92.01 | |
| KOG0676|consensus | 372 | 91.93 | ||
| KOG2517|consensus | 516 | 91.9 | ||
| PRK10331 | 470 | L-fuculokinase; Provisional | 91.77 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 91.76 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 91.57 | |
| KOG0680|consensus | 400 | 91.36 | ||
| PLN02295 | 512 | glycerol kinase | 90.76 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 90.62 | |
| KOG2517|consensus | 516 | 90.58 | ||
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 90.57 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 90.42 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 90.27 | |
| KOG2531|consensus | 545 | 90.04 | ||
| KOG0681|consensus | 645 | 89.42 | ||
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 88.95 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 85.08 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 84.97 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 84.88 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 84.47 | |
| KOG0681|consensus | 645 | 84.25 | ||
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 83.0 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 82.24 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 81.66 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 80.52 | |
| PLN02666 | 1275 | 5-oxoprolinase | 80.13 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-112 Score=877.18 Aligned_cols=579 Identities=56% Similarity=0.862 Sum_probs=532.4
Q ss_pred CcccCCCCCeeEEeecccccccceeeccccc------cc-CCccccceeeEEEeccCeEEee--cCCCceee----e-ee
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGD------NL-GQGLIKPAFSGIRLEEGAVMLY--CSDGYTAG----W-IN 66 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~------~~-g~~~~~ps~v~~~~~~~~~~~G--~~~~~~~~----~-~k 66 (1023)
|+|+.|+...+ |.|+||+|.|||.+++.++ ++ .+....|.-.-++ -++ ++| .++....+ | |+
T Consensus 50 VgV~kNgrvEI-iANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD--~KR-LIGr~~~d~~vq~Dik~~Pfk 125 (663)
T KOG0100|consen 50 VGVYKNGRVEI-IANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFD--AKR-LIGRKFNDKSVQKDIKFLPFK 125 (663)
T ss_pred EEEEeCCeEEE-EecCCCCccccceeeeccchhhhhhHhhcccccCcccceec--hHH-HhCcccCChhhhhhhhcCceE
Confidence 68999999999 9999999999999998843 33 3334455422122 111 223 11111111 1 11
Q ss_pred cccCCcC----cccc-ccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHc
Q psy6736 67 SITGDLT----PWDG-ARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIA 141 (1023)
Q Consensus 67 ~~~g~~~----~~~~-~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~A 141 (1023)
-...+.+ +.+. +..+.|+|++++||+| .++++.|++++|.+++++|+||||||++.|||++++|..+|
T Consensus 126 vv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL-------~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIA 198 (663)
T KOG0100|consen 126 VVNKDGKPYIQVKVGGGETKVFTPEEISAMIL-------TKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIA 198 (663)
T ss_pred EEcCCCCccEEEEccCCcccccCHHHHHHHHH-------HHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceec
Confidence 1112222 2333 3467899999999999 99999999999999999999999999999999999999999
Q ss_pred CCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHH
Q psy6736 142 GLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 221 (1023)
Q Consensus 142 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~ 221 (1023)
||+++|+||||+|||++|+++... .++++||||+||||||+|++.+.+++|+|++++||.++||+|||++
T Consensus 199 gLnV~RIiNePTaAAIAYGLDKk~----------gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~r 268 (663)
T KOG0100|consen 199 GLNVVRIINEPTAAAIAYGLDKKD----------GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQR 268 (663)
T ss_pred cceEEEeecCccHHHHHhcccccC----------CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHH
Confidence 999999999999999999998762 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHH
Q psy6736 222 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301 (1023)
Q Consensus 222 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 301 (1023)
+++||.+.|+++++.++..+.+++.+|+++||+||+.||++.++.+.|+++++|.||+-++||+.||++.-++|..++.|
T Consensus 269 vm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkP 348 (663)
T KOG0100|consen 269 VMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKP 348 (663)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeee
Q psy6736 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 381 (1023)
Q Consensus 302 i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~ 381 (1023)
+.++|+++++.+.||+.|+||||++|||.||++|+++|+|+++...+|||||||+|||.+|..+++ .....++++.|+
T Consensus 349 v~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG--ee~t~divLLDv 426 (663)
T KOG0100|consen 349 VQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG--EEDTGDIVLLDV 426 (663)
T ss_pred HHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc--ccCcCcEEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999998 456889999999
Q ss_pred ccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCeEEE
Q psy6736 382 TPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEV 461 (1023)
Q Consensus 382 ~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 461 (1023)
+|+++||++.+|.|..+|||||.+|++++..|+|+.|+|+.+.|.+|+|++.+.++|..+|+|.+.|+||+|+|.|+|+|
T Consensus 427 ~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEV 506 (663)
T KOG0100|consen 427 NPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEV 506 (663)
T ss_pred ccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh-
Q psy6736 462 TFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED- 540 (1023)
Q Consensus 462 ~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~- 540 (1023)
+|.+|.||+|+|++.++.+|++++++|+++.++||+++|++|++..++|.++|+..+++.++||+||+|.|++++.+.+
T Consensus 507 tFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dk 586 (663)
T KOG0100|consen 507 TFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDK 586 (663)
T ss_pred EEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q psy6736 541 EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGA 602 (1023)
Q Consensus 541 ~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g~~ 602 (1023)
+.+...+++++++.+..++++..+||+++.+|++++|.+++++|+..+.||..+++..+|++
T Consensus 587 ekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~ 648 (663)
T KOG0100|consen 587 EKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGA 648 (663)
T ss_pred hHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 56889999999999999999999999999999999999999999999999999999988754
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-90 Score=829.74 Aligned_cols=595 Identities=65% Similarity=0.959 Sum_probs=532.3
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|++|++.|||++.+..+ ..++| ..|..++..||+++|..
T Consensus 18 va~~~~g~~~i-i~n~~g~r~tPS~V~f~~~-------------------~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 77 (653)
T PTZ00009 18 VGVWKNENVEI-IANDQGNRTTPSYVAFTDT-------------------ERLIGDAAKNQVARNPENTVFDAKRLIGRK 77 (653)
T ss_pred EEEEeCCceEE-EECCCCCccCCcEEEECCC-------------------CEEEcHHHHHhhhhCcccEEhhhHHHhCCC
Confidence 57888888888 8888888888888777521 11223 45667777788888763
Q ss_pred C-------------------------cc--ccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCC
Q psy6736 73 T-------------------------PW--DGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAY 125 (1023)
Q Consensus 73 ~-------------------------~~--~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~ 125 (1023)
. +. .......++|++|++++| ++|++.|+.++|.++.++|||||+|
T Consensus 78 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL-------~~lk~~ae~~~g~~v~~~VItVPa~ 150 (653)
T PTZ00009 78 FDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL-------QKMKEIAEAYLGKQVKDAVVTVPAY 150 (653)
T ss_pred CCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHH-------HHHHHHHHHHhCCCcceeEEEeCCC
Confidence 1 00 011235799999999999 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEE
Q psy6736 126 FNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVK 205 (1023)
Q Consensus 126 ~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 205 (1023)
|++.||+++++||++|||++++||+||+|||++|+...... .+.++|||||||||||+|++++.++.++++
T Consensus 151 f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~---------~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 151 FNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGD---------GEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCC---------CCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 99999999999999999999999999999999999765311 467899999999999999999999999999
Q ss_pred EecCCCCccHHHHHHHHHHHHHHHHHhhh-ccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecH
Q psy6736 206 STAGDTHLGGEDFDNRMVNHFVQEFKRKY-KKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 284 (1023)
Q Consensus 206 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~-~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr 284 (1023)
++.||.++||.+||.+|++|+.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.++.++|||
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR 301 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISR 301 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECH
Confidence 99999999999999999999999998776 36777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 285 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 285 ~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
++|+++++|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|+++|+++|++.++...+|||+|||+|||++|++
T Consensus 302 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999997778888999999999999999999
Q ss_pred HhCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEE
Q psy6736 365 LHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 444 (1023)
Q Consensus 365 l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~ 444 (1023)
+++...++++++.+.|++|++||++..++.+.+||++|+++|++++++|++..++|+.+.|.||||++....+|..||+|
T Consensus 382 ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~ 461 (653)
T PTZ00009 382 LTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKF 461 (653)
T ss_pred hcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEE
Confidence 99755577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 445 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAK 524 (1023)
Q Consensus 445 ~i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 524 (1023)
.+.++|+.+.|.+.|+|+|++|.||+|+|++.+..+++...+++.....+|+.++++++++.+.++..+|+..+++.+++
T Consensus 462 ~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eak 541 (653)
T PTZ00009 462 HLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541 (653)
T ss_pred EEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999988876678999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccC-CCC
Q psy6736 525 NSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG-GAP 603 (1023)
Q Consensus 525 N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g-~~~ 603 (1023)
|+||+|||++|+.|+++++..++++++++++.+.++++++||+++.+++.++|++|+++|+++++|+..|++..+| |+|
T Consensus 542 N~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~ 621 (653)
T PTZ00009 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMP 621 (653)
T ss_pred hhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999986668999999999999999999999999888899999999999999999999999987766 455
Q ss_pred CCCCCCCC-CCCCCCCC--CCCCCCCCccCC
Q psy6736 604 GGFPGAPG-AGAPPSGA--PGAGPGPTIEEG 631 (1023)
Q Consensus 604 ~~~p~~~~-~~~~~~~~--~~~~~~~~~~~~ 631 (1023)
++-|+-|+ --+.++++ +|+++||.+++.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (653)
T PTZ00009 622 GGMPGGMPGGMPGGAGPAGAGASSGPTVEEV 652 (653)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Confidence 54444332 11122223 356789988875
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-86 Score=796.32 Aligned_cols=557 Identities=46% Similarity=0.682 Sum_probs=506.0
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|.+|++.+||++.+.. ++..++| ..|..++..||+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~r~tPS~V~f~~------------------~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 76 (653)
T PRK13411 16 VAVLEGGKPIV-IPNSEGGRTTPSIVGFGK------------------SGDRLVGQLAKRQAVTNAENTVYSIKRFIGRR 76 (653)
T ss_pred EEEEECCEEEE-EECCCCCccCceEEEEeC------------------CCCEEEcHHHHHhhhhCcccchHHHHHHhCCC
Confidence 57788888887 888888777777776642 2223334 35666777788888863
Q ss_pred C---------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHH
Q psy6736 73 T---------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSV 131 (1023)
Q Consensus 73 ~---------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr 131 (1023)
. +.+...+..++|++++|++| ++|++.|+.++|.++.++|||||+||++.||
T Consensus 77 ~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR 149 (653)
T PRK13411 77 WDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMIL-------QKLKQDAEAYLGEPVTQAVITVPAYFTDAQR 149 (653)
T ss_pred ccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCCCCcHHH
Confidence 1 11122345789999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
+++++||++|||++++|++||+|||++|+..... .+.++|||||||||||+|++++.++.++++++.|+.
T Consensus 150 ~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~----------~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~ 219 (653)
T PRK13411 150 QATKDAGTIAGLEVLRIINEPTAAALAYGLDKQD----------QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNN 219 (653)
T ss_pred HHHHHHHHHcCCCeEEEecchHHHHHHhcccccC----------CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCC
Confidence 9999999999999999999999999999886431 467899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC----CceeEEEecHHHH
Q psy6736 212 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARF 287 (1023)
Q Consensus 212 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~ 287 (1023)
++||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++++.. +.++.+.|||++|
T Consensus 220 ~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~f 299 (653)
T PRK13411 220 HLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKF 299 (653)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHH
Confidence 999999999999999999998888888889999999999999999999999999998887643 3578899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
+++++|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++|++..+..++|||+|||+|||++|+.+++
T Consensus 300 e~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~ 379 (653)
T PRK13411 300 EELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGG 379 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999997778888999999999999999999986
Q ss_pred CCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEec
Q psy6736 368 DKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT 447 (1023)
Q Consensus 368 ~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~ 447 (1023)
.++++.+.|++|++||+++.++.|.+|||||+++|++++++|++..++|+.+.|.+|||++..+.+|..+|+|.+.
T Consensus 380 ----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~ 455 (653)
T PRK13411 380 ----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLT 455 (653)
T ss_pred ----CccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEc
Confidence 2678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6736 448 SIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSL 527 (1023)
Q Consensus 448 ~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~l 527 (1023)
++|+++.|.+.|+|+|++|.||+|+|++.+..+|++..+.+.+. .+|+.+++++++++++++..+|+..+++.++||+|
T Consensus 456 ~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~l 534 (653)
T PRK13411 456 GIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQA 534 (653)
T ss_pred CCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888764 57999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccCC
Q psy6736 528 ESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGG 601 (1023)
Q Consensus 528 E~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g~ 601 (1023)
|+|+|.+|+.|++ +..++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..++++++|+
T Consensus 535 Es~iy~~r~~l~~--~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 535 DSLLYSYESTLKE--NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999974 578999999999999999999999984 4688999999999999999999999877664
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-86 Score=791.52 Aligned_cols=554 Identities=39% Similarity=0.624 Sum_probs=504.1
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||++.++.|.+ |.|.+|.+.|||++.+.. ++.+++| ..|..++..||+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~r~tPS~V~f~~------------------~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~ 76 (668)
T PRK13410 16 VAVMEGGKPVV-IANAEGMRTTPSVVGFTK------------------DGELLVGQLARRQLVLNPQNTFYNLKRFIGRR 76 (668)
T ss_pred EEEEECCeEEE-EECCCCCccCceEEEEeC------------------CCCEEECHHHHHhhHhCccceehHHhhhhCCC
Confidence 57788888887 788888777777776642 2233344 45677778888888874
Q ss_pred Cc-----------------------cccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 TP-----------------------WDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~~-----------------------~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
.. .....+..++|++|+|++| ++|++.|+.++|.++.++|||||+||++.
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~ 149 (668)
T PRK13410 77 YDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMIL-------RKLADDASRYLGEPVTGAVITVPAYFNDS 149 (668)
T ss_pred chhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCCCCHH
Confidence 20 0111235799999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecC
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 209 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~ 209 (1023)
||++|++||++|||++++||+||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|
T Consensus 150 qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-----------~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~g 218 (668)
T PRK13410 150 QRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-----------SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSG 218 (668)
T ss_pred HHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC-----------CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeec
Confidence 99999999999999999999999999999987653 5678999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEEecHH
Q psy6736 210 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRA 285 (1023)
Q Consensus 210 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~ 285 (1023)
+.++||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++..+|||+
T Consensus 219 d~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (668)
T PRK13410 219 DTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRK 298 (668)
T ss_pred CCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHH
Confidence 999999999999999999999988888888899999999999999999999999999998876543 4688999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 286 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+|+++|+++++++..+|+++|+++++.+.+|+.|+||||+||||+|++.|+++| +.++...+||++|||+|||++|+++
T Consensus 299 ~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 299 QFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999 5677889999999999999999999
Q ss_pred hCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEE
Q psy6736 366 HGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFE 445 (1023)
Q Consensus 366 ~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~ 445 (1023)
++ .++++.+.|++|++||+++.+|.+.+|||+|+++|++++.+|++..++|+.+.|+||||++....+|..||+|.
T Consensus 378 s~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~ 453 (668)
T PRK13410 378 AG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFK 453 (668)
T ss_pred cc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEE
Confidence 87 35789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 446 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525 (1023)
Q Consensus 446 i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N 525 (1023)
|.++|+++.|.++|+|+|++|.||+|+|++.+..||++..+++... .+|+.++++++++++.++..+|+..+++.++||
T Consensus 454 l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn 532 (668)
T PRK13410 454 LSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRN 532 (668)
T ss_pred EeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888754 679999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhh--hhhhccCCHHHHHHHHHhhHHHHHHHhhCC-ccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 526 SLESYCFNMKSTVED--EKLKDKISDAERTQILDKCNDVIKWLDANQ-LAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 526 ~lE~~iy~~~~~l~~--~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~-~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
++|+|+|.+|+.|.+ +.+..++++++++++.+.++++++||++++ +...+.+.++++.|+.+..++..|+.+
T Consensus 533 ~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 533 RALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999975 358899999999999999999999999775 466777888889999999999999988
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-85 Score=784.88 Aligned_cols=554 Identities=44% Similarity=0.674 Sum_probs=501.4
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ +.|++|++.|||++.+. .++.+++| ..|..++..+|+++|..
T Consensus 53 va~~~~g~~~i-i~n~~g~r~tPS~V~f~------------------~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 113 (673)
T PLN03184 53 VAAMEGGKPTI-VTNAEGQRTTPSVVAYT------------------KNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRK 113 (673)
T ss_pred EEEEECCeEEE-EECCCCCeecceEEEEc------------------CCCCEEECHHHHHhhhhCchhhhHHHHHhhCCC
Confidence 46777777776 77777777777776664 22233444 45677777888888864
Q ss_pred Cc-----------------------cccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 TP-----------------------WDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~~-----------------------~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
.. .....+..++|+++++++| ++|++.|+.+++.++.++|||||+||++.
T Consensus 114 ~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~ 186 (673)
T PLN03184 114 MSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL-------RKLVDDASKFLNDKVTKAVITVPAYFNDS 186 (673)
T ss_pred cchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHH
Confidence 20 0112345799999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecC
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 209 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~ 209 (1023)
||+++++||++|||++++||+||+|||++|+.... .+.++|||||||||||+|++++.++.++++++.|
T Consensus 187 qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-----------~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~g 255 (673)
T PLN03184 187 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-----------SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 255 (673)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC-----------CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecC
Confidence 99999999999999999999999999999987653 4678999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC----CceeEEEecHH
Q psy6736 210 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRA 285 (1023)
Q Consensus 210 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~ 285 (1023)
+.++||++||++|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++++.. +.++.++|||+
T Consensus 256 d~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 335 (673)
T PLN03184 256 DTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRA 335 (673)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHH
Confidence 99999999999999999999999888888889999999999999999999999999998876542 35788999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 286 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+|+++++++++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++| +..+...+|||+|||+|||++|+++
T Consensus 336 ~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~l 414 (673)
T PLN03184 336 KFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVL 414 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 5677788999999999999999999
Q ss_pred hCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEE
Q psy6736 366 HGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFE 445 (1023)
Q Consensus 366 ~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~ 445 (1023)
++ .++++.+.|++|++||+++.++.+.+|||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.
T Consensus 415 s~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~ 490 (673)
T PLN03184 415 AG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFR 490 (673)
T ss_pred cc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEE
Confidence 86 35688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 446 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525 (1023)
Q Consensus 446 i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N 525 (1023)
|.++|+++.|.+.|+|+|.+|.||+|+|++.+..++++..+++... .+|+.++++++++++.++..+|+..+++.++||
T Consensus 491 i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN 569 (673)
T PLN03184 491 LDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKN 569 (673)
T ss_pred EeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888754 579999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q psy6736 526 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGA 602 (1023)
Q Consensus 526 ~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g~~ 602 (1023)
+||+|+|.+|+.|.+ +.+++++++++++.+.++++++||+.+ +.+.+++++++|.+.+.++..+++..+|+.
T Consensus 570 ~lE~~iy~~r~~l~e--~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~ 641 (673)
T PLN03184 570 QADSVVYQTEKQLKE--LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAG 641 (673)
T ss_pred hHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999963 788999999999999999999999976 567889999999999999999988777643
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-85 Score=786.73 Aligned_cols=552 Identities=47% Similarity=0.745 Sum_probs=501.6
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|++|.+.+||++.+.. ++..++| ..|..++..+|+++|..
T Consensus 55 va~~~~~~~~i-i~n~~g~r~tPS~V~f~~------------------~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 115 (663)
T PTZ00400 55 VAIMEGSQPKV-IENSEGMRTTPSVVAFTE------------------DGQRLVGIVAKRQAVTNPENTVFATKRLIGRR 115 (663)
T ss_pred EEEEeCCeeEE-EECCCCCcccCeEEEEeC------------------CCCEEECHHHHHhHHhCCcceehhhhhhcCCC
Confidence 57777888777 778777777777776642 2233334 45677777788888863
Q ss_pred C-----------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 T-----------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~-----------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
. +.+...+..++|++++|++| ++|++.|+.++|.++.++|||||+||++.
T Consensus 116 ~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~ 188 (663)
T PTZ00400 116 YDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVL-------EKMKETAESYLGRKVKQAVITVPAYFNDS 188 (663)
T ss_pred cCcHHHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHH-------HHHHHHHHHHhCCCCceEEEEECCCCCHH
Confidence 1 11112345799999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecC
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 209 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~ 209 (1023)
||+++++||++||+++++||+||+|||++|+.... .+.++|||||||||||+|++++.++.++++++.|
T Consensus 189 qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-----------~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~g 257 (663)
T PTZ00400 189 QRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-----------DGKTIAVYDLGGGTFDISILEILGGVFEVKATNG 257 (663)
T ss_pred HHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-----------CCcEEEEEeCCCCeEEEEEEEecCCeeEEEeccc
Confidence 99999999999999999999999999999987653 5679999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEEecHH
Q psy6736 210 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRA 285 (1023)
Q Consensus 210 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~ 285 (1023)
+.++||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||+
T Consensus 258 d~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 337 (663)
T PTZ00400 258 NTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRA 337 (663)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHH
Confidence 999999999999999999999988888888899999999999999999999999888888876543 4789999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 286 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+|+++++|+++++..+|.++|+++++.+.+|+.|+||||+||+|+|++.|+++| +.++...+|||+|||+|||++|+++
T Consensus 338 efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 338 KLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999 5677889999999999999999999
Q ss_pred hCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEE
Q psy6736 366 HGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFE 445 (1023)
Q Consensus 366 ~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~ 445 (1023)
++ ..+++.+.|++|++||+++.+|.|.++||+|+++|++++.+|++..|+|+.+.|.||||++..+.+|..+|+|.
T Consensus 417 ~~----~~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~ 492 (663)
T PTZ00400 417 KG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFD 492 (663)
T ss_pred cC----CccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEE
Confidence 86 35788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 446 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525 (1023)
Q Consensus 446 i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N 525 (1023)
+.++|+++.|.+.|+|+|.+|.||+|+|++.+..+++...++++.. .+|+.++++++++++.++..+|+..+++.++||
T Consensus 493 i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN 571 (663)
T PTZ00400 493 LVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKN 571 (663)
T ss_pred EcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888764 579999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy6736 526 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600 (1023)
Q Consensus 526 ~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g 600 (1023)
+||+|+|++|+.|.+ +...+++++++++.+.++++++||+++ +.+++++++++|++.+.++..+++..++
T Consensus 572 ~lEs~iy~~r~~l~e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 572 EAETLIYSVEKQLSD--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHHHHHH--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999974 888999999999999999999999976 5789999999999999999998876543
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-85 Score=779.19 Aligned_cols=552 Identities=40% Similarity=0.646 Sum_probs=496.5
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ +.|..|.+.+||++.+.. +..++| .+|..++..||+++|..
T Consensus 41 vA~~~~~~~~i-i~n~~g~r~tPS~V~f~~-------------------~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~ 100 (657)
T PTZ00186 41 VATMDGDKARV-LENSEGFRTTPSVVAFKG-------------------SEKLVGLAAKRQAITNPQSTFYAVKRLIGRR 100 (657)
T ss_pred EEEEeCCceEE-eecCCCCcccceEEEECC-------------------CCEEEcHHHHHhhhhCchhHHHHHHHHhccc
Confidence 46777777776 777777666676665541 122334 45677777888888863
Q ss_pred Cc-----------------------cc-cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCH
Q psy6736 73 TP-----------------------WD-GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNI 128 (1023)
Q Consensus 73 ~~-----------------------~~-~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~ 128 (1023)
.- .+ ...+..++|++|++++| ++|++.|+.++|.++.++|||||+||++
T Consensus 101 ~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL-------~~Lk~~Ae~~lg~~v~~aVITVPayF~~ 173 (657)
T PTZ00186 101 FEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVL-------EKMKETAENFLGHKVSNAVVTCPAYFND 173 (657)
T ss_pred cccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHH-------HHHHHHHHHHhCCccceEEEEECCCCCh
Confidence 10 00 01245799999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEec
Q psy6736 129 SSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 208 (1023)
Q Consensus 129 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~ 208 (1023)
.||+++++||++|||++++||+||+|||++|+.... .+.+++|||+||||||+|++++.++.++++++.
T Consensus 174 ~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-----------~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~ 242 (657)
T PTZ00186 174 AQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-----------KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATN 242 (657)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-----------CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEec
Confidence 999999999999999999999999999999997653 467899999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEEecH
Q psy6736 209 GDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITR 284 (1023)
Q Consensus 209 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr 284 (1023)
||.++||+|||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.++|||
T Consensus 243 Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR 322 (657)
T PTZ00186 243 GDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISR 322 (657)
T ss_pred CCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecH
Confidence 9999999999999999999999999988888889999999999999999999999999988876432 458899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 285 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 285 ~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
++|++++++++++++.+++++|+++++.+.+|+.|+||||+||||.|++.|+++| +.++...+|||+|||+|||++|++
T Consensus 323 ~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 323 SKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 556678899999999999999999
Q ss_pred HhCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEE
Q psy6736 365 LHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 444 (1023)
Q Consensus 365 l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~ 444 (1023)
+++ .++++.+.|++|++||+++.+|.+.+|||||++||++++..|++..|+|+.+.|+||||++..+.+|..||+|
T Consensus 402 l~~----~~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~ 477 (657)
T PTZ00186 402 LRG----DVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQF 477 (657)
T ss_pred hcc----ccCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceE
Confidence 987 3568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 445 ELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAK 524 (1023)
Q Consensus 445 ~i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 524 (1023)
.+.++|+.|+|.+.|+|+|++|.||+|+|++.+..||++..++|... ..|++++++++++..+++..+|+..+++.+++
T Consensus 478 ~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~ 556 (657)
T PTZ00186 478 DLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVR 556 (657)
T ss_pred EEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 46999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy6736 525 NSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600 (1023)
Q Consensus 525 N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g 600 (1023)
|++|.+++.++..+.+ . ..+++++++.+.+.+...++||..+ +.+.+.+++++++|++.+.++..+++..++
T Consensus 557 ~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 628 (657)
T PTZ00186 557 NNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAA 628 (657)
T ss_pred HHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999964 2 4689999999999999999999843 346789999999999999999988765443
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-86 Score=746.31 Aligned_cols=576 Identities=70% Similarity=1.004 Sum_probs=524.5
Q ss_pred CcccCCCCCeeEEeecccccccceeeccccccc--C-----CccccceeeEEEeccCeEEee--cCCCceeeeeecccCC
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNL--G-----QGLIKPAFSGIRLEEGAVMLY--CSDGYTAGWINSITGD 71 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~--g-----~~~~~ps~v~~~~~~~~~~~G--~~~~~~~~~~k~~~g~ 71 (1023)
||+|.++...+ +.|++|++.|||.+++.++-. | +....|.-.-++ -+++. | ..+.......++|...
T Consensus 21 v~v~~~~~v~i-ian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~--~krli-Gr~f~d~~v~~~~k~~pf~ 96 (620)
T KOG0101|consen 21 VGVYQSGKVEI-IANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFD--AKRLI-GRFFDDPEVQSDMKLWPFK 96 (620)
T ss_pred eeeEcCCccee-eeccccCccccceeeecccccchhhhhhhhhhcCCcceeee--hhhhc-CccccchhhHhHhhcCCcc
Confidence 68888888888 999999999999999996421 2 223344322111 11222 3 1222222222333211
Q ss_pred --------cC--ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHc
Q psy6736 72 --------LT--PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIA 141 (1023)
Q Consensus 72 --------~~--~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~A 141 (1023)
.. +........|.|+++++++| .++++.|+.++|.++.++|+|||+||++.||+++.+|+.+|
T Consensus 97 V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L-------~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~ia 169 (620)
T KOG0101|consen 97 VISDQGGKPKIQVTYKGETKSFNPEEISSMVL-------TKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIA 169 (620)
T ss_pred cccccCCcceEEecccccceeeeeeeeeehhc-------cccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhc
Confidence 11 12223346899999999999 99999999999999999999999999999999999999999
Q ss_pred CCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHH
Q psy6736 142 GLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 221 (1023)
Q Consensus 142 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~ 221 (1023)
||+++++|+||+|||++|++.+... ...+++|+|+||||||+|++.+.++.+.+.++.||.++||.+||+.
T Consensus 170 Gl~vlrii~EPtAaalAygl~k~~~---------~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 170 GLNVLRIINEPTAAALAYGLDKKVL---------GERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred CCceeeeecchHHHHHHhhcccccc---------ceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHH
Confidence 9999999999999999999776521 6788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHH
Q psy6736 222 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301 (1023)
Q Consensus 222 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 301 (1023)
|++|+..+|+.+++.++..+++++.+|+.+||.+|+.||....+.+.++++++|.++...|+|.+|+.++.+++..++.+
T Consensus 241 l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 241 LVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeee
Q psy6736 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 381 (1023)
Q Consensus 302 i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~ 381 (1023)
+.++|+++++.+.+|+.|+||||++|+|.+|..++++|+++.+..++|||++||+|||++||.+++.....+.++.+.|+
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999987777899999999
Q ss_pred ccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCeEEE
Q psy6736 382 TPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEV 461 (1023)
Q Consensus 382 ~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 461 (1023)
.|.++|+++.++.|.++|++||.+|+.++.+|+|+.|+|+.+.|.||+|++...++|..+|.|.+.++|++|+|++.|++
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Iev 480 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480 (620)
T ss_pred ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhh
Q psy6736 462 TFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDE 541 (1023)
Q Consensus 462 ~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~~ 541 (1023)
+|.+|.||+|.|++++..||+...+++++..++||.++|+++....+.+..+|+..+.+.+++|.||+|+|+++..++++
T Consensus 481 tfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~ 560 (620)
T KOG0101|consen 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDE 560 (620)
T ss_pred EEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy6736 542 KLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 598 (1023)
Q Consensus 542 ~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 598 (1023)
. ..++++++.++.+++.++..||+.+..+.+++|+.|.++|+..+.||+.+++.+
T Consensus 561 ~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 561 K--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred c--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 4 899999999999999999999999988889999999999999999999999876
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-83 Score=778.19 Aligned_cols=551 Identities=48% Similarity=0.748 Sum_probs=502.6
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ +.|++|++.+||++.+.+ ++.+.+| ..|..++..+|+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~r~~PS~V~f~~------------------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~ 76 (627)
T PRK00290 16 VAVMEGGEPKV-IENAEGARTTPSVVAFTK------------------DGERLVGQPAKRQAVTNPENTIFSIKRLMGRR 76 (627)
T ss_pred EEEEECCEEEE-EECCCCCcccceEEEEeC------------------CCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC
Confidence 57788888887 888888887787776642 2223334 45666777788888865
Q ss_pred C---------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHH
Q psy6736 73 T---------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSV 131 (1023)
Q Consensus 73 ~---------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr 131 (1023)
. ..+...+..++|+++++++| ++|++.|+.++|.++.++|||||+||++.||
T Consensus 77 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL-------~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR 149 (627)
T PRK00290 77 DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMIL-------QKLKKDAEDYLGEKVTEAVITVPAYFNDAQR 149 (627)
T ss_pred chHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHH-------HHHHHHHHHHhCCCCceEEEEECCCCCHHHH
Confidence 1 11122345799999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
+++++||++|||++++||+||+|||++|+.... .+.++|||||||||||+|++++.++.++++++.|+.
T Consensus 150 ~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-----------~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~ 218 (627)
T PRK00290 150 QATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-----------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDT 218 (627)
T ss_pred HHHHHHHHHcCCceEEEecchHHHHHHhhhccC-----------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCC
Confidence 999999999999999999999999999987653 468899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEEecHHHH
Q psy6736 212 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARF 287 (1023)
Q Consensus 212 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~ 287 (1023)
++||.+||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.++|||++|
T Consensus 219 ~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~f 298 (627)
T PRK00290 219 HLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKF 298 (627)
T ss_pred CcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHH
Confidence 9999999999999999999999988888899999999999999999999999999988876542 578899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
+++++++++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++..++||++|||+|||++|+.+++
T Consensus 299 e~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 299 EELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999 677888999999999999999999986
Q ss_pred CCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEec
Q psy6736 368 DKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT 447 (1023)
Q Consensus 368 ~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~ 447 (1023)
.++++.+.|++|++||+++.++.+.+|||+|+++|++++++|++..++|+.+.|.+|||++....+|..||+|.+.
T Consensus 378 ----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~ 453 (627)
T PRK00290 378 ----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLT 453 (627)
T ss_pred ----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEEC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6736 448 SIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSL 527 (1023)
Q Consensus 448 ~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~l 527 (1023)
++|+.+.|.+.|+|+|++|.||+|+|++.+..+++...+++... .+|+.++++++++++.++..+|+..+++.++||+|
T Consensus 454 ~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~l 532 (627)
T PRK00290 454 GIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532 (627)
T ss_pred CCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 99999999989999999999999999999999999998888765 56999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy6736 528 ESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599 (1023)
Q Consensus 528 E~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~ 599 (1023)
|+|+|.+|+.|+ ++..++++++++++.+.++++++||+++ +.++|++++++|+++++++..|+++.+
T Consensus 533 e~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~ 599 (627)
T PRK00290 533 DSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQA 599 (627)
T ss_pred HHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999997 3778999999999999999999999976 678999999999999999999987643
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=766.49 Aligned_cols=549 Identities=49% Similarity=0.729 Sum_probs=498.9
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ +.|++|.+.+||++.+.++ +.+++| ..|..++..||+++|..
T Consensus 14 va~~~~g~~~i-i~n~~~~~~~PS~V~~~~~------------------~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~ 74 (595)
T TIGR02350 14 VAVMEGGEPVV-IPNAEGARTTPSVVAFTKN------------------GERLVGQPAKRQAVTNPENTIYSIKRFMGRR 74 (595)
T ss_pred EEEEECCEEEE-EECCCCCcccCeEEEEeCC------------------CCEEECHHHHHhhhhCchhhhHHHHHHhCCC
Confidence 57788888887 7888887777777766522 233334 45666777788888874
Q ss_pred C--------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHH
Q psy6736 73 T--------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVK 132 (1023)
Q Consensus 73 ~--------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~ 132 (1023)
. +.+...+..++|+++++++| ++|++.|+.++|.++.++|||||+||++.||+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L-------~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~ 147 (595)
T TIGR02350 75 FDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMIL-------QKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQ 147 (595)
T ss_pred chHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHH
Confidence 2 11122345789999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCC
Q psy6736 133 STKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 212 (1023)
Q Consensus 133 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 212 (1023)
++++||++||+++++||+||+|||++|+.... ..+.++|||||||||||+|++++.++.++++++.|+..
T Consensus 148 a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~----------~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~ 217 (595)
T TIGR02350 148 ATKDAGKIAGLEVLRIINEPTAAALAYGLDKS----------KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTH 217 (595)
T ss_pred HHHHHHHHcCCceEEEecchHHHHHHHhhccc----------CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcc
Confidence 99999999999999999999999999987652 15688999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC----CceeEEEecHHHHH
Q psy6736 213 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFE 288 (1023)
Q Consensus 213 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e 288 (1023)
+||.+||..|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+.. +.++.++|||++|+
T Consensus 218 lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe 297 (595)
T TIGR02350 218 LGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297 (595)
T ss_pred cCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHH
Confidence 99999999999999999999998888889999999999999999999999999998887653 35788999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCC
Q psy6736 289 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 368 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~ 368 (1023)
++++|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|+ .++..++||++|||+|||++|+.+++.
T Consensus 298 ~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999995 778889999999999999999999872
Q ss_pred CCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecC
Q psy6736 369 KSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTS 448 (1023)
Q Consensus 369 ~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~ 448 (1023)
++++.+.|++|++||++..++.+.+|||+|+++|++++++|++..|+|+.+.+.+|||++..+.+|..||+|.+++
T Consensus 377 ----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~ 452 (595)
T TIGR02350 377 ----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTG 452 (595)
T ss_pred ----cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECC
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 449 IPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 449 ~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
+|+.+.|.++|+++|++|.||+|+|++.+..++++..++++.. .+||.++++++++++.++..+|+..+++.+++|+||
T Consensus 453 ~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lE 531 (595)
T TIGR02350 453 IPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNAD 531 (595)
T ss_pred CCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 9999999989999999999999999999999999988888764 569999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 529 SYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 596 (1023)
Q Consensus 529 ~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~ 596 (1023)
+|||.+|+.|++ +..++++++++++.+.++++++||+++ +..++++++++|+++++++..+++
T Consensus 532 s~iy~~r~~l~~--~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 532 SLAYQAEKTLKE--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred HHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999974 578999999999999999999999976 567899999999999999988753
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-82 Score=763.21 Aligned_cols=549 Identities=48% Similarity=0.718 Sum_probs=498.7
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|++|.+.+||++.+. .++.+++| .+|..++..+|+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~r~~PS~V~f~------------------~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 76 (621)
T CHL00094 16 VAVMEGGKPTV-IPNAEGFRTTPSIVAYT------------------KKGDLLVGQIAKRQAVINPENTFYSVKRFIGRK 76 (621)
T ss_pred EEEEECCEEEE-EECCCCCcccceEEEEc------------------CCCCEEECHHHHHhHHhCccceehhhHHhcCCC
Confidence 46777778877 77777777777776664 22333444 35677778888888875
Q ss_pred C-----------ccc------------cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 T-----------PWD------------GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~-----------~~~------------~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
. ..+ ...+..++|+++++++| ++|++.|+.++|.++.++|||||+||++.
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL-------~~l~~~ae~~lg~~v~~~VItVPa~f~~~ 149 (621)
T CHL00094 77 FSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVL-------RKLVEDASKYLGETVTQAVITVPAYFNDS 149 (621)
T ss_pred hHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHH
Confidence 2 000 11245789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecC
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 209 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~ 209 (1023)
||+++++||++|||++++||+||+|||++|+.... .+.++|||||||||||+|++++.++.+++++++|
T Consensus 150 qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-----------~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~g 218 (621)
T CHL00094 150 QRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-----------NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSG 218 (621)
T ss_pred HHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC-----------CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEec
Confidence 99999999999999999999999999999987653 4678999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC----CceeEEEecHH
Q psy6736 210 DTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE----GVDFYTSITRA 285 (1023)
Q Consensus 210 ~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~ 285 (1023)
+.++||++||.+|++|+.++|.++++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++...|||+
T Consensus 219 d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~ 298 (621)
T CHL00094 219 DTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298 (621)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHH
Confidence 99999999999999999999999999888889999999999999999999999989898887643 24788899999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 286 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+|+++++++++++..+|+++|+++++.+.+|+.|+||||+||+|.|++.|+++| +.++...+||++|||+|||++|+.+
T Consensus 299 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 5678889999999999999999999
Q ss_pred hCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEE
Q psy6736 366 HGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFE 445 (1023)
Q Consensus 366 ~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~ 445 (1023)
++ ..+++.+.|++|++||++..++.+.+|||+|+++|++++.+|++..++|+.+.+.+|||++..+.+|..||+|.
T Consensus 378 s~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~ 453 (621)
T CHL00094 378 AG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFR 453 (621)
T ss_pred cC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEE
Confidence 86 35788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 446 LTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525 (1023)
Q Consensus 446 i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N 525 (1023)
+.++|+.+.|.+.|+|+|++|.||+|+|++.+..+++...+++.+ ..+|+.++++++++++.++..+|+..+++.+++|
T Consensus 454 i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn 532 (621)
T CHL00094 454 LDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKN 532 (621)
T ss_pred EeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 999999999998999999999999999999999999988888874 3579999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 526 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 526 ~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
+||+|+|.+|+.|++ +..++++++++++.+.++++++||+++ ..+++++++++|++.++++..+++.
T Consensus 533 ~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 533 QAESLCYQAEKQLKE--LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HhHHHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999974 788999999999999999999999976 4578999999999999999998766
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=751.04 Aligned_cols=545 Identities=37% Similarity=0.560 Sum_probs=488.1
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|.+|.+.+||++.+.+ ++.+.+| .+|..++..||+++|..
T Consensus 13 va~~~~g~~~i-i~n~~g~~~~PS~V~f~~------------------~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~ 73 (599)
T TIGR01991 13 VASVRSGVPEV-LPDAEGRVLLPSVVRYLK------------------DGGVEVGKEALAAAAEDPKNTISSVKRLMGRS 73 (599)
T ss_pred EEEEECCEEEE-EECCCCCcccCeEEEEeC------------------CCCEEecHHHHHhhhhChhhhHHHHHHHhCCC
Confidence 46777777777 777777666666666542 2334445 35677777888888864
Q ss_pred Cc--------------------cccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHH
Q psy6736 73 TP--------------------WDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVK 132 (1023)
Q Consensus 73 ~~--------------------~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~ 132 (1023)
.- .+....+.++|+++++++| ++|++.|+.++|.++.++|||||+||++.||+
T Consensus 74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL-------~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~ 146 (599)
T TIGR01991 74 IEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEIL-------KKLKQRAEESLGGDLVGAVITVPAYFDDAQRQ 146 (599)
T ss_pred ccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCCCCHHHHH
Confidence 20 0111234789999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCC
Q psy6736 133 STKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 212 (1023)
Q Consensus 133 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 212 (1023)
++++||++||+++++|++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.+
T Consensus 147 a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----------~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~ 215 (599)
T TIGR01991 147 ATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-----------SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSA 215 (599)
T ss_pred HHHHHHHHcCCCceEEecCHHHHHHHHhhccC-----------CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCC
Confidence 99999999999999999999999999987653 5678999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhH
Q psy6736 213 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNA 292 (1023)
Q Consensus 213 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~ 292 (1023)
+||.+||++|++|+.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. +|.++.++|||++|+++++
T Consensus 216 lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~ 289 (599)
T TIGR01991 216 LGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQ 289 (599)
T ss_pred CCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHH
Confidence 999999999999999765 3444567889999999999999999999988888874 6889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcc
Q psy6736 293 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEE 372 (1023)
Q Consensus 293 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~ 372 (1023)
|+++++..+|.++|+++++.+.+|+.|+||||+||+|+|++.|++.| +..+..++|||+|||+|||++|+.+++ .+.
T Consensus 290 ~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~--~~~ 366 (599)
T TIGR01991 290 PLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAG--NRI 366 (599)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhcc--ccc
Confidence 99999999999999999999999999999999999999999999999 556677899999999999999999987 345
Q ss_pred eeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCC
Q psy6736 373 VQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPA 452 (1023)
Q Consensus 373 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 452 (1023)
.+++.+.|++|++||+++.+|.+.++||||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.
T Consensus 367 ~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~ 446 (599)
T TIGR01991 367 GNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446 (599)
T ss_pred cCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6736 453 PRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCF 532 (1023)
Q Consensus 453 ~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy 532 (1023)
+.|.+.|+|+|++|.||+|+|++.+..||++..+.+.+. ..|++++++++.++..++..+|+..++..+++|++|+|+|
T Consensus 447 ~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 525 (599)
T TIGR01991 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILE 525 (599)
T ss_pred CCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888764 5699999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 533 NMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 533 ~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
.++..+.+ +...+++++++++.+.++++++||+++ +.+.++++.++|++.+.++..+...
T Consensus 526 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 526 ALQAALAA--DGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998864 446889999999999999999999876 5678899999999999999875554
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-80 Score=740.38 Aligned_cols=541 Identities=35% Similarity=0.552 Sum_probs=477.9
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|.+|.+.+||++.+. .++ +.+| ..|..++..+|+++|..
T Consensus 33 va~~~~g~~~i-i~n~~g~~~~PS~V~f~------------------~~~-~~vG~~A~~~~~~~p~~ti~~~KrliG~~ 92 (616)
T PRK05183 33 VATVRSGQAEV-LPDEQGRVLLPSVVRYL------------------EDG-IEVGYEARANAAQDPKNTISSVKRFMGRS 92 (616)
T ss_pred EEEEECCEEEE-EEcCCCCeecCeEEEEc------------------CCC-EEEcHHHHHhhHhCchhhHHHHHHHhCCC
Confidence 35556666655 56655555555555544 222 4455 45677777888888864
Q ss_pred Cc---------------------cccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHH
Q psy6736 73 TP---------------------WDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSV 131 (1023)
Q Consensus 73 ~~---------------------~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr 131 (1023)
.. .+....+.++|+++++++| ++|++.|+.++|.++.++|||||+||++.||
T Consensus 93 ~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR 165 (616)
T PRK05183 93 LADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEIL-------KALRQRAEETLGGELDGAVITVPAYFDDAQR 165 (616)
T ss_pred chhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCCCCHHHH
Confidence 20 0001124789999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
+++++||++||+++++||+||+|||++|+.... .+.+++|||+||||||+|++++.++.++++++.||.
T Consensus 166 ~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----------~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~ 234 (616)
T PRK05183 166 QATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-----------QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDS 234 (616)
T ss_pred HHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-----------CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCC
Confidence 999999999999999999999999999987653 467899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHh
Q psy6736 212 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 291 (1023)
Q Consensus 212 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~ 291 (1023)
++||.+||.+|++|+.++|+ .+...+++.+.+|+.+||++|+.||.+..+.+.+... ...|||++|++++
T Consensus 235 ~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~ 304 (616)
T PRK05183 235 ALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALI 304 (616)
T ss_pred CcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHH
Confidence 99999999999999998775 3344678889999999999999999999888887532 2349999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCc
Q psy6736 292 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSE 371 (1023)
Q Consensus 292 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~ 371 (1023)
+|+++++..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++| +..+..++|||+|||+|||++|+.+++ .+
T Consensus 305 ~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~--~~ 381 (616)
T PRK05183 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAG--NK 381 (616)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhcc--cc
Confidence 999999999999999999999999999999999999999999999999 455667899999999999999999987 33
Q ss_pred ceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCC
Q psy6736 372 EVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPP 451 (1023)
Q Consensus 372 ~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~ 451 (1023)
..+++.+.|++|++||+++.+|.+.+|||||+++|++++..|++..|+|+.+.++||||++..+.+|..||+|.|.++|+
T Consensus 382 ~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~ 461 (616)
T PRK05183 382 PDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPP 461 (616)
T ss_pred ccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6736 452 APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYC 531 (1023)
Q Consensus 452 ~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~i 531 (1023)
.+.|.++|+|+|++|.||+|+|++.+..+|++..+++.+. ..|+++++++++++..++..+|+..+++.+++|++|+|+
T Consensus 462 ~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i 540 (616)
T PRK05183 462 MAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVL 540 (616)
T ss_pred CCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988755 469999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy6736 532 FNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 598 (1023)
Q Consensus 532 y~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 598 (1023)
|.++..+.+ ....+++++++++.+.++++++||..+ +.+.+++++++|++.+.++..+..+.
T Consensus 541 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 541 EALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999964 336789999999999999999999865 66899999999999999999865543
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-81 Score=675.17 Aligned_cols=570 Identities=45% Similarity=0.684 Sum_probs=510.1
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccc---cCCccccceeeEEE---eccCeEEee----------cCCCceeee
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDN---LGQGLIKPAFSGIR---LEEGAVMLY----------CSDGYTAGW 64 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~---~g~~~~~ps~v~~~---~~~~~~~~G----------~~~~~~~~~ 64 (1023)
||+|+|..|.+ +.|..|.|.|||.+++.-|. .|...++-++.+=. +.++ .++| ......++.
T Consensus 41 va~meg~~~ki-ienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatK-rligRrf~d~evq~~~k~vpyKi 118 (640)
T KOG0102|consen 41 VAVMEGKKPKI-IENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATK-RLIGRRFDDPEVQKDIKQVPYKI 118 (640)
T ss_pred EEEEeCCCceE-eecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEeh-hhhhhhccCHHHHHHHHhCCcce
Confidence 68999999998 99999999999999887332 12222222222100 0011 1223 123445666
Q ss_pred eecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCc
Q psy6736 65 INSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLN 144 (1023)
Q Consensus 65 ~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~ 144 (1023)
+|...|+..+.. ++..++|.++.+++| .+++++|+.+++.++..+|+||||||++.||+++++|.++||++
T Consensus 119 Vk~~ngdaw~e~--~G~~~spsqig~~vl-------~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~ 189 (640)
T KOG0102|consen 119 VKASNGDAWVEA--RGKQYSPSQIGAFVL-------MKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLN 189 (640)
T ss_pred EEccCCcEEEEe--CCeEecHHHHHHHHH-------HHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccce
Confidence 665555544444 778999999999999 99999999999999999999999999999999999999999999
Q ss_pred eeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHH
Q psy6736 145 VLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 224 (1023)
Q Consensus 145 ~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 224 (1023)
+++++|||+|||++|+++.. .+..++|||+||||||+|++.+.++++++.++.||.++||++||..+..
T Consensus 190 vlrvineptaaalaygld~k-----------~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 190 VLRVINEPTAAALAYGLDKK-----------EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred eeccCCccchhHHhhccccc-----------CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 99999999999999999876 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEEecHHHHHHHhHHHHHHHHH
Q psy6736 225 HFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTME 300 (1023)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~ 300 (1023)
|+...|.+..+.++..+.++++||+.++|++|++||...++.+.++++..+ ..+++++||.+|++++.+++++.++
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999887654 5789999999999999999999999
Q ss_pred HHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEee
Q psy6736 301 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLD 380 (1023)
Q Consensus 301 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d 380 (1023)
++.++|++|++..+||+.|+||||.+|+|.+++.+++.| +......+|||++||.|||++++.+++ .++++.+.|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g----eVkdvlLLd 413 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG----EVKDVLLLD 413 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhc----cccceeeee
Confidence 999999999999999999999999999999999999999 677888999999999999999999987 589999999
Q ss_pred eccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCeEE
Q psy6736 381 VTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIE 460 (1023)
Q Consensus 381 ~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 460 (1023)
++|+++|+++.+|.|..+||||+.||++++..|.+..|+|+.+.|.++||++....+|..+|+|.+.++|+.|+|.+.|+
T Consensus 414 VtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqie 493 (640)
T KOG0102|consen 414 VTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIE 493 (640)
T ss_pred cchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q psy6736 461 VTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVED 540 (1023)
Q Consensus 461 v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~ 540 (1023)
|+|.+|.||+++|+|.++.|+|.+++++....+ ||+++++.+....+++...|+.++++.+..|..|+++|.....+..
T Consensus 494 VtfDIdanGI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~ 572 (640)
T KOG0102|consen 494 VTFDIDANGIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE 572 (640)
T ss_pred EEEeecCCceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh
Confidence 999999999999999999999999999988755 9999999999999999999999999999999999999999888863
Q ss_pred hhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy6736 541 EKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600 (1023)
Q Consensus 541 ~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g 600 (1023)
+....+.++..+|...+.+..+.+..-...+.++...+...|++..-|++..++..++
T Consensus 573 --~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 573 --FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred --hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 7778888888899999999888875322233478888999999999999988876543
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=719.89 Aligned_cols=517 Identities=32% Similarity=0.475 Sum_probs=445.8
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEeecCCCceeeeeecccCCcC-------
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLYCSDGYTAGWINSITGDLT------- 73 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G~~~~~~~~~~k~~~g~~~------- 73 (1023)
||+|.++.|.+ |.|.+|++.+||++.+..+. +.+|... ++.++|+++|...
T Consensus 33 va~~~~~~~~i-i~n~~g~~~tPS~V~f~~~~-------------------~~vG~~A--ti~~~KrliG~~~~~~~~~~ 90 (595)
T PRK01433 33 IAIATNRKVKV-IKSIDDKELIPTTIDFTSNN-------------------FTIGNNK--GLRSIKRLFGKTLKEILNTP 90 (595)
T ss_pred EEEEeCCeeEE-EECCCCCeecCeEEEEcCCC-------------------EEECchh--hHHHHHHHhCCCchhhccch
Confidence 57777788877 78877777777777665221 2233211 3344455554321
Q ss_pred ----------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHH
Q psy6736 74 ----------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDS 137 (1023)
Q Consensus 74 ----------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 137 (1023)
..+...+..++|+++++++| ++|++.|+.++|.++.++||||||||++.||+++++|
T Consensus 91 ~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL-------~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 91 ALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIF-------IYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred hhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 12222345799999999999 9999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHH
Q psy6736 138 GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 217 (1023)
Q Consensus 138 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 217 (1023)
|++||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++|+++.||.++||++
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~-----------~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d 232 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKN-----------QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGND 232 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccC-----------CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHH
Confidence 999999999999999999999987653 456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHH
Q psy6736 218 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG 297 (1023)
Q Consensus 218 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~ 297 (1023)
||.+|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..++|||++|+++++|++++
T Consensus 233 ~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~ 292 (595)
T PRK01433 233 IDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVER 292 (595)
T ss_pred HHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHH
Confidence 999999999988742 22222 23459999999998764221 16899999999999999999
Q ss_pred HHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeE
Q psy6736 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLL 377 (1023)
Q Consensus 298 i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~ 377 (1023)
+..+++++|++++ +.+|+.|+||||+||+|+|++.|+++| +.++..++|||+|||+|||++|+.+++. ..++.
T Consensus 293 ~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~ 365 (595)
T PRK01433 293 TINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSL 365 (595)
T ss_pred HHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceE
Confidence 9999999999998 678999999999999999999999999 5677788999999999999999999762 35788
Q ss_pred EeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCC
Q psy6736 378 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457 (1023)
Q Consensus 378 ~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 457 (1023)
+.|++|++||+++.+|.+.+|||||+++|+++++.|++..|+|+.+.|+||||++..+.+|..||+|.+.++|+.++|.+
T Consensus 366 l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 445 (595)
T PRK01433 366 LIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445 (595)
T ss_pred EEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy6736 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537 (1023)
Q Consensus 458 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~ 537 (1023)
.|+|+|++|.||+|+|++.+..||++..+.+... ..|+++++++++++.+++..+|...++..+++|++|+++|.++..
T Consensus 446 ~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 524 (595)
T PRK01433 446 RAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERA 524 (595)
T ss_pred cEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999765 459999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHH
Q psy6736 538 VEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNP 590 (1023)
Q Consensus 538 l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~p 590 (1023)
+++ +...+++++++++.+.+++.++||..+ +...+++++++|++...+
T Consensus 525 ~~~--~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 525 IAE--LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 964 556789999999999999999999865 333444444444444444
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-77 Score=703.76 Aligned_cols=547 Identities=49% Similarity=0.728 Sum_probs=507.8
Q ss_pred CcccCCC-CCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCC
Q psy6736 1 MAIIHPD-HPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGD 71 (1023)
Q Consensus 1 vav~~~~-~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~ 71 (1023)
||+|.++ .|.+ +.|.+|.+.+||++.+..+ +.+.+| ..|..+...+|+.+|.
T Consensus 19 vA~~~~~~~~~v-i~n~~g~r~~PSvv~f~~~------------------~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~ 79 (579)
T COG0443 19 VAVMRGGGLPKV-IENAEGERLTPSVVAFSKN------------------GEVLVGQAAKRQAVDNPENTIFSIKRKIGR 79 (579)
T ss_pred EEEEeCCCCceE-ecCCCCCcccceEEEECCC------------------CCEEecHHHHHHhhhCCcceEEEEehhcCC
Confidence 5788877 6777 8888887777777766633 233334 5788899999999996
Q ss_pred cC----ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceee
Q psy6736 72 LT----PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLR 147 (1023)
Q Consensus 72 ~~----~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~ 147 (1023)
.. ..+...++.++|++|++++| ++|+++|+.+++.++.++||||||||++.||+++++||++|||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~eeisa~~L-------~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlr 152 (579)
T COG0443 80 GSNGLKISVEVDGKKYTPEEISAMIL-------TKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152 (579)
T ss_pred CCCCCcceeeeCCeeeCHHHHHHHHH-------HHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 32 34444446899999999999 99999999999999999999999999999999999999999999999
Q ss_pred eecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q psy6736 148 IINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 227 (1023)
Q Consensus 148 li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 227 (1023)
+++||+|||++|+.... .+..++|||+||||||+|++++.++.++++++.||.++||++||.+|++|+.
T Consensus 153 linEPtAAAlayg~~~~-----------~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 153 LINEPTAAALAYGLDKG-----------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred EecchHHHHHHhHhccC-----------CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 99999999999999875 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6736 228 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR 307 (1023)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 307 (1023)
.+|..+++.++..+++.+++|+.+||++|+.||...++.+.++++..+.++..+|||++||+++.+++.++..++.++|.
T Consensus 222 ~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~ 301 (579)
T COG0443 222 MEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALK 301 (579)
T ss_pred HHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877778899999999999999999999999999999
Q ss_pred HcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeeeccccce
Q psy6736 308 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 387 (1023)
Q Consensus 308 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sig 387 (1023)
++++++.+|+.|+||||++|||.|++.++++|+ +++...+|||++||.|||++|+.+++.. .++.+.|++|+++|
T Consensus 302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll~Dv~plslg 376 (579)
T COG0443 302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLLLDVIPLSLG 376 (579)
T ss_pred HcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc----cCceEEeeeeeccc
Confidence 999999999999999999999999999999995 8888999999999999999999998732 38899999999999
Q ss_pred EEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCeEEEEEEEcC
Q psy6736 388 IETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDA 467 (1023)
Q Consensus 388 i~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~ 467 (1023)
++..++.+.++|++|+.+|.++...|++..|+|..+.+++++|++....+|..+|.|.+.++|+.++|.+.|+++|.+|.
T Consensus 377 ie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~ 456 (579)
T COG0443 377 IETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDA 456 (579)
T ss_pred cccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhccC
Q psy6736 468 NGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKI 547 (1023)
Q Consensus 468 ~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~ 547 (1023)
||+++|++.+..+|++..+++....+ |++++++.+.+..+.+.+.|...++..+.+|..+++++.++..|.+. . .+
T Consensus 457 ~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-~~ 532 (579)
T COG0443 457 NGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEI--V-KV 532 (579)
T ss_pred CcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh--c-cC
Confidence 99999999999999999999999887 99999999999999999999999999999999999999999999763 3 89
Q ss_pred CHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 548 SDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 548 ~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
+++++.++.+.+.+.++||+. . .++++.+.++|+....++..++++
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 533 SEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred CHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987 2 889999999999999999887654
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-78 Score=623.51 Aligned_cols=366 Identities=65% Similarity=1.039 Sum_probs=354.8
Q ss_pred ccCCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Q psy6736 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 707 (1023)
Q Consensus 628 ~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 707 (1023)
++..+.++++||||+||||||||++.+.+|.|+|+++.||.||||+|||.++++||.+.++++++.|++.+.+++++|++
T Consensus 218 LDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrR 297 (663)
T KOG0100|consen 218 LDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRR 297 (663)
T ss_pred ccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH
Q psy6736 708 ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 787 (1023)
Q Consensus 708 ~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~ 787 (1023)
+||+||++||++.++.++|+++++|.||+-++||..||++..++|..+++|++++|+++++.+.+|+.|+|||||+|||.
T Consensus 298 e~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPK 377 (663)
T KOG0100|consen 298 EVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPK 377 (663)
T ss_pred HHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceE
Q psy6736 788 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 788 v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~ 867 (1023)
||++|+++|.++++...+|||||||+|||.+|..++|. ....++++.|++|.++||++.+|.|+.+|||||.+|++++
T Consensus 378 vQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKS 455 (663)
T KOG0100|consen 378 VQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKS 455 (663)
T ss_pred HHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeecceeeccccCCcccCcccc
Confidence 99999999999999999999999999999999999985 4678999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecc
Q psy6736 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 947 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~ 947 (1023)
+.|+++.|+|+.+.|.||+|++.+.++|+.||.|.+.++||+|+|.|+|+|+|++|.||||+|+|.++.+|+.++
T Consensus 456 QvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~k----- 530 (663)
T KOG0100|consen 456 QVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEK----- 530 (663)
T ss_pred ceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcce-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887554
Q ss_pred ccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 948 DRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
++|+|+.++||+|+|++|.+..++++++|+...++.++||+||+|.|+|++.+
T Consensus 531 ---------------------itItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi 583 (663)
T KOG0100|consen 531 ---------------------ITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQI 583 (663)
T ss_pred ---------------------EEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhcc
Confidence 55666678999999999999999999999999999999999999999999875
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=706.76 Aligned_cols=551 Identities=42% Similarity=0.686 Sum_probs=484.1
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||++.++.|.+ |.|.+|++.+||++.+..+ ...+| ..|..++..+|+++|..
T Consensus 13 va~~~~~~~~i-i~~~~~~~~~ps~v~~~~~-------------------~~~~G~~a~~~~~~~~~~~~~~~k~liG~~ 72 (602)
T PF00012_consen 13 VAVFKNGKPEI-ILNEEGKRKTPSVVSFSDN-------------------ERLVGEDAKSQMIRNPKNTIYNLKRLIGRK 72 (602)
T ss_dssp EEEEETTEEEE-E--TTS-SSEESEEEEESS-------------------CEEETHHHHHTTTTSGGGEEESGGGTTTSB
T ss_pred EEEEEeccccc-cccccccccccceeeEeee-------------------cccCCcchhhhccccccccccccccccccc
Confidence 57778888877 7888888888888776632 11222 33455566666666652
Q ss_pred C-------------------------cccc--ccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCC
Q psy6736 73 T-------------------------PWDG--ARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAY 125 (1023)
Q Consensus 73 ~-------------------------~~~~--~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~ 125 (1023)
. +.+. +....++|+++++++| ++|++.|+.+++..+.++|||||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~l~~~a~~~~~~~~~~~vitVPa~ 145 (602)
T PF00012_consen 73 FDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMIL-------KYLKEMAEKYLGEKVTDVVITVPAY 145 (602)
T ss_dssp TTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHH-------HHHHHHHHHHHTSBEEEEEEEE-TT
T ss_pred ccccccchhhhcccccccccccccccccccccccceeeeeecccccch-------hhhcccchhhcccccccceeeechh
Confidence 1 1111 1224789999999999 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEE
Q psy6736 126 FNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVK 205 (1023)
Q Consensus 126 ~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 205 (1023)
|++.||++|++||+.|||++++||+||+|||++|+..+.. .+.++|||||||||+|+|++++.++.++++
T Consensus 146 ~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~----------~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~ 215 (602)
T PF00012_consen 146 FTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD----------KGKTVLVVDFGGGTFDVSVVEFSNGQFEVL 215 (602)
T ss_dssp --HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS----------SEEEEEEEEEESSEEEEEEEEEETTEEEEE
T ss_pred hhhhhhhcccccccccccccceeecccccccccccccccc----------cccceeccccccceEeeeehhccccccccc
Confidence 9999999999999999999999999999999999877652 478999999999999999999999999999
Q ss_pred EecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCC--CCceEEEEecccC-CceeEEEe
Q psy6736 206 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS--STQASIEIDSLFE-GVDFYTSI 282 (1023)
Q Consensus 206 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~--~~~~~i~i~~~~~-~~~~~~~i 282 (1023)
++.++..+||.+||.+|++|+.++|+.+++.+...+++.+.+|+.+||++|+.||. +.+..+.++.+.+ |.++.+.|
T Consensus 216 ~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~i 295 (602)
T PF00012_consen 216 ATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITI 295 (602)
T ss_dssp EEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEE
T ss_pred ccccccccccceecceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998888889999999999999999999999 6667778887777 88999999
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHH
Q psy6736 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 283 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
||++|+++++|+++++..+|+++|+++++++.+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a 374 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYA 374 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccch
Confidence 9999999999999999999999999999999999999999999999999999999995 778889999999999999999
Q ss_pred HHHhCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceee
Q psy6736 363 AILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLG 442 (1023)
Q Consensus 363 ~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg 442 (1023)
+.+++ .++.+++.+.|++|++||++..++.+.+++++|+++|...+..|.+..++|..+.+.+|+|+.....+|..+|
T Consensus 375 ~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig 452 (602)
T PF00012_consen 375 AILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIG 452 (602)
T ss_dssp HHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEE
T ss_pred hhhcc--ccccccccccccccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccc
Confidence 99987 4667788999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEEecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 443 KFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVIS 522 (1023)
Q Consensus 443 ~~~i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~ 522 (1023)
++.+.++++.+.|.++|+++|++|.+|+|+|++.+..++....+++..... ++.++++++.++++++..+|+.++++.+
T Consensus 453 ~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e 531 (602)
T PF00012_consen 453 SYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAE 531 (602)
T ss_dssp EEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccc
Confidence 999999999999999999999999999999999999999888888887755 9999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhC-CccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 523 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 523 a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
++|+||+++|++|+.+++. ...++++++ .+.+++..+||+++ .+++.++|++|+++|++..+||..|+++
T Consensus 532 ~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 532 AKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999874 677777777 78888999999887 4678999999999999999999999863
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-69 Score=602.21 Aligned_cols=499 Identities=30% Similarity=0.513 Sum_probs=449.1
Q ss_pred ccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHH
Q psy6736 78 ARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAI 157 (1023)
Q Consensus 78 ~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal 157 (1023)
+....|+|++|.||+| .+|++.|+..+..++.+|||+||+||++.||+++.+||+.|||++++|++|.+|+|+
T Consensus 107 ge~~~ft~~Qv~Am~l-------~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al 179 (727)
T KOG0103|consen 107 GEKHPFTPEQVLAMLL-------TKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATAL 179 (727)
T ss_pred cCCCCCChHHHHHHHH-------HHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHh
Confidence 3447899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccC
Q psy6736 158 AYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 237 (1023)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 237 (1023)
+||+.+...+ -+..++.+++++|+|++++.+|++.|..|.+.++++.+|.++||++||+.|.+|+..+|+.+++++
T Consensus 180 ~ygiyKtDLP----~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykid 255 (727)
T KOG0103|consen 180 AYGIYKTDLP----ENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKID 255 (727)
T ss_pred hcccccccCC----CcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccc
Confidence 9999887432 234468899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcC
Q psy6736 238 LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH 317 (1023)
Q Consensus 238 ~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 317 (1023)
...++++..||+.+||+.|+.||+++....+|++++++.|.+..|+|++||+++.|+++++..++.++|+++++..+||+
T Consensus 256 v~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~ 335 (727)
T KOG0103|consen 256 VRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIH 335 (727)
T ss_pred hhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeeeccccceEEec----C-
Q psy6736 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA----G- 392 (1023)
Q Consensus 318 ~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~----~- 392 (1023)
.|.+|||+||+|.|++.|.++| ++++..++|.|+|||+|||+++|++++ .++++.+.+.|+.||+|.+.+. +
T Consensus 336 ~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~ 412 (727)
T KOG0103|consen 336 AVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDG 412 (727)
T ss_pred eEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecccceeEEEEeccccccC
Confidence 9999999999999999999999 899999999999999999999999998 7899999999999999988743 2
Q ss_pred ceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecC-ccccccCceeeEEEecCCCCCCC-CCCeEEEEEEEcCCcc
Q psy6736 393 GVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE-RAMTKDNNLLGKFELTSIPPAPR-GVPQIEVTFDIDANGI 470 (1023)
Q Consensus 393 ~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~i~~~~~~~~-g~~~i~v~f~~d~~g~ 470 (1023)
+....+||+|.++|.++..+|.... .+.+.++++. ..++.....|+++.+.++.+... ...+++|...++.+|+
T Consensus 413 ~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi 488 (727)
T KOG0103|consen 413 GSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGI 488 (727)
T ss_pred CCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccc
Confidence 5557899999999999999887543 4677776654 55665667899999998887766 4568999999999999
Q ss_pred eEEEEEec--------------c--------------CCc----ceeEEEec-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6736 471 LNVTAIEK--------------S--------------TGK----ENKITITN-DRGRLSKEDIERMVNDAEKYKAEDEKQ 517 (1023)
Q Consensus 471 l~v~~~~~--------------~--------------t~~----~~~~~i~~-~~~~ls~~~~~~~~~~~~~~~~~d~~~ 517 (1023)
.+|..... . .++ ...+.+.. ..+.|+..+++..++++.+|...|+..
T Consensus 489 ~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~ 568 (727)
T KOG0103|consen 489 DTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLE 568 (727)
T ss_pred eeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhh
Confidence 98864210 0 000 01122222 235799999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhC-CccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 518 KAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAICNPIITKLY 596 (1023)
Q Consensus 518 ~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L~~~~~pi~~r~~ 596 (1023)
.++..++|.||+|+|.+|++|.+ .|.++++++++++|...++++++|||++ ++.++..|..|+.+|+.+++ ..|+.
T Consensus 569 ~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~ 645 (727)
T KOG0103|consen 569 KETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFD 645 (727)
T ss_pred hhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhh
Confidence 99999999999999999999986 6899999999999999999999999987 48999999999999999998 66666
Q ss_pred c
Q psy6736 597 Q 597 (1023)
Q Consensus 597 e 597 (1023)
+
T Consensus 646 e 646 (727)
T KOG0103|consen 646 E 646 (727)
T ss_pred h
Confidence 5
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=567.80 Aligned_cols=497 Identities=28% Similarity=0.447 Sum_probs=435.1
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhc
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~ 160 (1023)
..|+.+++.||+| .+.+..|+.+...+|+++|||||.||++.||+++.+||++||++++.||+|.+|||+.|+
T Consensus 131 ~~ysvEellAMil-------~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~yg 203 (902)
T KOG0104|consen 131 EEYSVEELLAMIL-------QYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYG 203 (902)
T ss_pred cccCHHHHHHHHH-------HHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhh
Confidence 5789999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEe----------CCEEEEEEecCCCCccHHHHHHHHHHHHHHHH
Q psy6736 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIE----------DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 230 (1023)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~----------~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~ 230 (1023)
+.+.... ...+++++|||||+|+|.++++.+. ...+++++.++|..+||..|..+|.+||...|
T Consensus 204 v~rRk~i------~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F 277 (902)
T KOG0104|consen 204 VFRRKEI------NETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEF 277 (902)
T ss_pred hhccccC------CCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHH
Confidence 9875332 2378999999999999999999984 25899999999999999999999999999999
Q ss_pred Hhhhcc--CccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6736 231 KRKYKK--DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD 308 (1023)
Q Consensus 231 ~~~~~~--~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 308 (1023)
.+.++. ++..++|++.+|.++|+++|..||+|.++.+.|+++++++||+.+|||++||++|+++..++..||.++|..
T Consensus 278 ~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~ 357 (902)
T KOG0104|consen 278 NEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKK 357 (902)
T ss_pred HHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 987764 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeeeccccceE
Q psy6736 309 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI 388 (1023)
Q Consensus 309 ~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi 388 (1023)
++++..+|+.|+|.||++|+|.||+.|.++.+..++..++|.|||+++||+++||.|+. +|+++++.+.|.++|+|-+
T Consensus 358 a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~yp~~v 435 (902)
T KOG0104|consen 358 AQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASVYPYLV 435 (902)
T ss_pred cCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeecccccEEE
Confidence 99999999999999999999999999999998889999999999999999999999997 8999999999999999988
Q ss_pred EecCc--------eEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCC----C--
Q psy6736 389 ETAGG--------VMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAP----R-- 454 (1023)
Q Consensus 389 ~~~~~--------~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~----~-- 454 (1023)
+..+. .-..+|++|.++|..+..+|+.++|+ +.+.+-.|.-. .-+..++++++...- .
T Consensus 436 ~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~ 507 (902)
T KOG0104|consen 436 EFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSD 507 (902)
T ss_pred EeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccch
Confidence 65432 22358999999999998888877665 33333222110 234477777765432 1
Q ss_pred -CCCeEEEEEEEcCCcceEEEEEec---------------------cC-----------------------Cc--c----
Q psy6736 455 -GVPQIEVTFDIDANGILNVTAIEK---------------------ST-----------------------GK--E---- 483 (1023)
Q Consensus 455 -g~~~i~v~f~~d~~g~l~v~~~~~---------------------~t-----------------------~~--~---- 483 (1023)
....|+++|.+|.+|++.|+..+. +| ++ +
T Consensus 508 ~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee 587 (902)
T KOG0104|consen 508 SESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEE 587 (902)
T ss_pred hhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCcccccccccc
Confidence 134699999999999998864320 00 00 0
Q ss_pred --------------------------------eeEEEecC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 484 --------------------------------NKITITND---RGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 484 --------------------------------~~~~i~~~---~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
..+.|+.. ...|....+.....+++.+.++|+.+.++++|.|.||
T Consensus 588 ~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE 667 (902)
T KOG0104|consen 588 AEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELE 667 (902)
T ss_pred ccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 01333322 2358899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCC-ccCHHHHHHHHHHHHHHHHHHHHHHHcccC
Q psy6736 529 SYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQ-LAEKEEFEHKQKELEAICNPIITKLYQGSG 600 (1023)
Q Consensus 529 ~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~-~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g 600 (1023)
.|+|++.+.|++++|..+++++|++.|++.+....+||+++. +..++.|.+++.+|++++..+..|..++..
T Consensus 668 ~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq 740 (902)
T KOG0104|consen 668 AFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQ 740 (902)
T ss_pred HHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 999999999999999999999999999999999999998874 788999999999999999999999988764
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=568.75 Aligned_cols=357 Identities=48% Similarity=0.792 Sum_probs=334.9
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+||+++.++.++|+++.||.+|||+|||.+|++|++++|..+++.++..+++++.+|+.+||++
T Consensus 210 ~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEka 289 (657)
T PTZ00186 210 KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKA 289 (657)
T ss_pred CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred hhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|+.||.+.++.+.++.+..+ .++.++|||++|+++++|++++++.+++++|+++++++.+|+.|+||||+||||.|
T Consensus 290 K~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V 369 (657)
T PTZ00186 290 KCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKV 369 (657)
T ss_pred HHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHH
Confidence 99999999999988865432 45889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEE
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~ 868 (1023)
+++|+++|+ ..+...+|||+|||+|||++|+++++. ++++.+.|++|++||+++.+|.|.+|||||++||++++.
T Consensus 370 ~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~ 444 (657)
T PTZ00186 370 VEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQ 444 (657)
T ss_pred HHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEee
Confidence 999999995 556688999999999999999999863 467899999999999999999999999999999999999
Q ss_pred EEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 869 ~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
.|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.+..||++..++|..
T Consensus 445 ~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~- 523 (657)
T PTZ00186 445 TFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITA- 523 (657)
T ss_pred ccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEecc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977665542
Q ss_pred cccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 949 RGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
..+||+++++++.++.++++.+|+..++..+++|++|+++|.++..+
T Consensus 524 --------------------------~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 570 (657)
T PTZ00186 524 --------------------------NGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQL 570 (657)
T ss_pred --------------------------CccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23699999999999999999999999999999999999999998765
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=546.60 Aligned_cols=365 Identities=84% Similarity=1.222 Sum_probs=352.3
Q ss_pred CCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHH
Q psy6736 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACE 710 (1023)
Q Consensus 631 ~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 710 (1023)
...+.+|||||+||||||+|++.+.+|.+.|.++.||.+|||.+||+.|++|+..+|+.+++.++..+++++.+|+.+||
T Consensus 193 ~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E 272 (620)
T KOG0101|consen 193 VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACE 272 (620)
T ss_pred ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 45678899999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHH
Q psy6736 711 RAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 790 (1023)
Q Consensus 711 ~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~ 790 (1023)
++|+.||...++++.++++++|.++..+|||.+|++++.+++.+++.++..+|+++++++.+|+.|+|||||||+|.++.
T Consensus 273 ~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ 352 (620)
T KOG0101|consen 273 RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQK 352 (620)
T ss_pred HHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEE
Q psy6736 791 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870 (1023)
Q Consensus 791 ~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f 870 (1023)
.++++|+++.+..++||||+||+|||++||.+++.....+.++++.|+.|.++||++.++.|.++|++||++|++++++|
T Consensus 353 ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~f 432 (620)
T KOG0101|consen 353 LLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTF 432 (620)
T ss_pred HHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeee
Confidence 99999988889999999999999999999999998887789999999999999999999999999999999999999999
Q ss_pred EeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccc
Q psy6736 871 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 950 (1023)
Q Consensus 871 ~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~ 950 (1023)
++..|||+.+.|.||||++...++|..+|.|.|.++||+|.|.+.|+++|.+|.||+|+|+|.++.||+.+++
T Consensus 433 tt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i------- 505 (620)
T KOG0101|consen 433 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKI------- 505 (620)
T ss_pred eeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceE-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 951 RRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+|+++.++||.++|++|....++++.+|+..+.+..++|.||+|+|+++.-+
T Consensus 506 -------------------~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~ 557 (620)
T KOG0101|consen 506 -------------------TITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATV 557 (620)
T ss_pred -------------------EEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhh
Confidence 4556678899999999999999999999999999999999999999999764
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=563.51 Aligned_cols=358 Identities=47% Similarity=0.799 Sum_probs=334.3
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+||+++.++.++|+++.||.+|||++||.+|++|+.++|..+++.++..+++++.+|+.+||++
T Consensus 185 ~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEka 264 (668)
T PRK13410 185 SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKA 264 (668)
T ss_pred CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999888888888899999999999999
Q ss_pred hhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|+.||.+..+.+.++.+..+ .++...|||++|+++|+++++++..+|+++|+++++++++|+.|+||||+||||+|
T Consensus 265 K~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V 344 (668)
T PRK13410 265 KIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344 (668)
T ss_pred HHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHH
Confidence 99999999999998876543 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEE
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~ 868 (1023)
+++|+++| +..+...+|||+|||+|||++|+++++ .++++.+.|++|++||+++.+|.+.+|||+|+++|++++.
T Consensus 345 ~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~ 419 (668)
T PRK13410 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSD 419 (668)
T ss_pred HHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccc
Confidence 99999999 466788899999999999999999986 3568999999999999999999999999999999999999
Q ss_pred EEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 869 ~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
.|++..++|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..||++..+.
T Consensus 420 ~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~---- 495 (668)
T PRK13410 420 VFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVT---- 495 (668)
T ss_pred cceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeee----
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887654333
Q ss_pred cccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 949 RGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
+.. ..+||+++++++++++.+|..+|+.++++.++||+||+|||.+|+++.
T Consensus 496 ----------------------i~~-~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~ 546 (668)
T PRK13410 496 ----------------------IQG-ASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLR 546 (668)
T ss_pred ----------------------ecc-cccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 246999999999999999999999999999999999999999999874
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=561.74 Aligned_cols=359 Identities=55% Similarity=0.861 Sum_probs=335.1
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
..++++|||||||||||+||+++.++.++|++++||.+|||++||.+|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 183 ~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~ 262 (653)
T PRK13411 183 DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEK 262 (653)
T ss_pred CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999988888888889999999999999
Q ss_pred HhhhcCCCceeEEEEecccC----CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 787 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~ 787 (1023)
+|+.||.+.++.+.++++.. +.++.+.|||++|+++++|++++++.+++++|+++++.+++|+.|+||||+||||+
T Consensus 263 aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~ 342 (653)
T PRK13411 263 AKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPA 342 (653)
T ss_pred HHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcch
Confidence 99999999999998887643 35788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceE
Q psy6736 788 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 788 v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~ 867 (1023)
|+++|+++|++..+..++|||+|||+|||++|+++++. ++++.+.|++|++||++..++.|.+|||+|+++|++++
T Consensus 343 v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~ 418 (653)
T PRK13411 343 VQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418 (653)
T ss_pred HHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCcccceee
Confidence 99999999977788889999999999999999999763 57889999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecc
Q psy6736 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 947 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~ 947 (1023)
..|++..++|+.+.|.||||++....+|..||++.+.++|+.+.|.++|+|+|++|.||+|+|++.+..+|++..+.
T Consensus 419 ~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~--- 495 (653)
T PRK13411 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIR--- 495 (653)
T ss_pred EEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeE---
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877654332
Q ss_pred ccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 948 DRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+.+ ..+||+++++++++++.+|..+|+.++++.++||+||+|||.+|+++
T Consensus 496 -----------------------i~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 496 -----------------------ITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred -----------------------Eec-cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 24699999999999999999999999999999999999999999987
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-59 Score=560.32 Aligned_cols=364 Identities=78% Similarity=1.172 Sum_probs=340.8
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhh-ccCcchhHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY-KKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~e~ 711 (1023)
.++++|||||||||||+||+++.++.++|+++.||.+|||++||.+|++|+.++|..++ +.++..+++++.+|+.+||+
T Consensus 192 ~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEk 271 (653)
T PTZ00009 192 GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCER 271 (653)
T ss_pred CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999998776 36777788999999999999
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
+|+.||.+.++.+.+++++++.++.++|||++|+++|+|++++++.+++++|+++++++.+|+.|+||||+||||.|+++
T Consensus 272 aK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 272 AKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred HHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEE
Q psy6736 792 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFT 871 (1023)
Q Consensus 792 l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~ 871 (1023)
|+++|++..+...+|||+|||+|||++|+++++...+.++++.+.|++|++||++..++.+.+|||+|++||++++.+|+
T Consensus 352 i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~ 431 (653)
T PTZ00009 352 IKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFT 431 (653)
T ss_pred HHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeE
Confidence 99999777788899999999999999999998765567788999999999999999999999999999999999999999
Q ss_pred eecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecccccc
Q psy6736 872 TYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGR 951 (1023)
Q Consensus 872 ~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~ 951 (1023)
+..++|+.+.|.||||++....+|..||++.+.++|+.++|.+.|+|+|++|.||+|+|++.+..++++..+
T Consensus 432 t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~-------- 503 (653)
T PTZ00009 432 TYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKI-------- 503 (653)
T ss_pred eecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeE--------
Confidence 999999999999999999999999999999999999999998899999999999999999998877765433
Q ss_pred ccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 952 RYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
++.....+||.++++++++++.+|..+|+.++++.++||+||+|||.+|+++.
T Consensus 504 ------------------~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 504 ------------------TITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred ------------------EEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 33334467999999999999999999999999999999999999999999873
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=558.92 Aligned_cols=358 Identities=54% Similarity=0.885 Sum_probs=333.3
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
..++++|||||||||||+||+++.++.++|+++.||.+|||++||.+|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 223 ~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~ 302 (663)
T PTZ00400 223 NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAET 302 (663)
T ss_pred CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999988888888889999999999999
Q ss_pred HhhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 787 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~ 787 (1023)
+|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|++++++++++++|+++++++++|+.|+||||+||||+
T Consensus 303 aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~ 382 (663)
T PTZ00400 303 AKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPK 382 (663)
T ss_pred HHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChH
Confidence 999999999888888866543 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceE
Q psy6736 788 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 788 v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~ 867 (1023)
|+++|+++|+ .++...+|||+|||+|||++|+++++. .+++.+.|++|++||++..+|.|.+|||+|+++|++++
T Consensus 383 v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~ 457 (663)
T PTZ00400 383 VSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKS 457 (663)
T ss_pred HHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccce
Confidence 9999999994 567789999999999999999999763 56789999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecc
Q psy6736 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 947 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~ 947 (1023)
..|++..|+|+.+.|.||||++....+|..||++.+.++|+.+.|.++|+|+|.+|.||+|+|++.+..+|++..+.+
T Consensus 458 ~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i-- 535 (663)
T PTZ00400 458 QVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITI-- 535 (663)
T ss_pred eeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEe--
Confidence 999999999999999999999999999999999999999999999999999999999999999999888876544333
Q ss_pred ccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 948 DRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+. ..+||+++++++++++.+|..+|+..+++.++||+||+|||.+|+++
T Consensus 536 ------------------------~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 584 (663)
T PTZ00400 536 ------------------------QS-SGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQL 584 (663)
T ss_pred ------------------------ec-cccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 24699999999999999999999999999999999999999999886
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=557.55 Aligned_cols=357 Identities=53% Similarity=0.845 Sum_probs=332.9
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+||+++.++.++|+++.||.+|||++||++|++|+.++|..+++.++..+++++.+|+.+||++
T Consensus 222 ~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEka 301 (673)
T PLN03184 222 SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKA 301 (673)
T ss_pred CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999988888888899999999999999
Q ss_pred hhhcCCCceeEEEEecccC----CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|+.||.+.++.+.++++.. +.++..+|||++|+++|+++++++..+|+++|+++++++++|+.|+||||+||||.|
T Consensus 302 K~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V 381 (673)
T PLN03184 302 KIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAV 381 (673)
T ss_pred HHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHH
Confidence 9999999999998876542 257889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEE
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~ 868 (1023)
+++|+++| +..+...+|||+|||+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|+++|++++.
T Consensus 382 ~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~ 456 (673)
T PLN03184 382 QELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSE 456 (673)
T ss_pred HHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecce
Confidence 99999999 466778899999999999999999986 3567899999999999999999999999999999999999
Q ss_pred EEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 869 ~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
+|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..++++..+.+.
T Consensus 457 ~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~-- 534 (673)
T PLN03184 457 VFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITIT-- 534 (673)
T ss_pred EeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEec--
Confidence 999999999999999999999999999999999999999999999899999999999999999999888775544332
Q ss_pred cccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 949 RGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
. ..+||+++++++++++.+|..+|+..+++.++||+||+|||.+|+++
T Consensus 535 ------------------------~-~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l 582 (673)
T PLN03184 535 ------------------------G-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQL 582 (673)
T ss_pred ------------------------c-cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 24699999999999999999999999999999999999999999987
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=505.93 Aligned_cols=358 Identities=54% Similarity=0.846 Sum_probs=340.9
Q ss_pred cceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHh
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 713 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 713 (1023)
+..++|||+||||||+||+++.++.++|.++.||.+|||+|||..+++|+..+|+...+.++..+.++++||++++|++|
T Consensus 211 ~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaK 290 (640)
T KOG0102|consen 211 DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAK 290 (640)
T ss_pred CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHH
Q psy6736 714 RTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 789 (1023)
Q Consensus 714 ~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 789 (1023)
++||...+..+.++.+..+ ..+++++||.+|++++.++++|+++++.++|++|++..+||+.|+||||.+|||.++
T Consensus 291 ielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~ 370 (640)
T KOG0102|consen 291 IELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQ 370 (640)
T ss_pred hhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHH
Confidence 9999999999999987765 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEE
Q psy6736 790 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQT 869 (1023)
Q Consensus 790 ~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~ 869 (1023)
+.+.++| +.......|||++||.|||++++.+.+ .++++.+.|++|.++|+++.+|.|..+||+||.||++++..
T Consensus 371 s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqv 445 (640)
T KOG0102|consen 371 STVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQV 445 (640)
T ss_pred HHHHHHh-CCCCCCCcCCcchhccchhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhh
Confidence 9999999 567788999999999999999999987 57899999999999999999999999999999999999999
Q ss_pred EEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecccc
Q psy6736 870 FTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDR 949 (1023)
Q Consensus 870 f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~ 949 (1023)
|.++.|+|+.+.|+|+||++....+|..+|+|.+.++||.|+|.|+|.|+|.+|.|||++|+|.++.||++..+++..
T Consensus 446 fstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~-- 523 (640)
T KOG0102|consen 446 FSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIAS-- 523 (640)
T ss_pred eeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEee--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977655443
Q ss_pred ccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCC
Q psy6736 950 GRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGRY 1023 (1023)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~~ 1023 (1023)
. ++||+++++.|.++.+.+...|+.++++.+.+|..|+++|.....++|
T Consensus 524 ------------------------s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~ 572 (640)
T KOG0102|consen 524 ------------------------S-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE 572 (640)
T ss_pred ------------------------c-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh
Confidence 2 349999999999999999999999999999999999999987766654
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=547.86 Aligned_cols=358 Identities=56% Similarity=0.875 Sum_probs=332.7
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+.+.++|||||||||||+||+++.++.++|++++||.++||++||.+|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 184 ~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~ 263 (621)
T CHL00094 184 KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEK 263 (621)
T ss_pred CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HhhhcCCCceeEEEEecccC----CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 787 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~ 787 (1023)
+|+.||.+.++.+.++.+.. +.++...|||++|+++++++++++..+|+++|+++++++.+|+.|+||||+||||.
T Consensus 264 aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~ 343 (621)
T CHL00094 264 AKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPA 343 (621)
T ss_pred HHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChH
Confidence 99999999988998887643 24688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceE
Q psy6736 788 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 788 v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~ 867 (1023)
|++.|+++|+ .++...+|||+|||+|||++|+.+++ ..+++.+.|++|++||++..+|.+.+|||+|+++|++++
T Consensus 344 v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~ 418 (621)
T CHL00094 344 IQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418 (621)
T ss_pred HHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeee
Confidence 9999999994 66788999999999999999999976 346789999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecc
Q psy6736 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 947 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~ 947 (1023)
..|++..++|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..++++..+.
T Consensus 419 ~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~--- 495 (621)
T CHL00094 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSIT--- 495 (621)
T ss_pred EEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeee---
Confidence 99999999999999999999999999999999999999999999988999999999999999999998887654333
Q ss_pred ccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 948 DRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+.+ ..+||+++++++++++.+|..+|+..+++.++||+||+|||.+|+++
T Consensus 496 -----------------------i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l 545 (621)
T CHL00094 496 -----------------------IQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQL 545 (621)
T ss_pred -----------------------ecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHH
Confidence 222 23699999999999999999999999999999999999999999987
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=548.53 Aligned_cols=357 Identities=56% Similarity=0.896 Sum_probs=333.9
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+|++++.++.++|+++.||.++||++||.+|++|+.++|..+++.++..+++++.+|+.+||++
T Consensus 183 ~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~a 262 (627)
T PRK00290 183 GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKA 262 (627)
T ss_pred CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|+.||.+.++.+.++.+..+ .++.++|||++|+++|+++++++..+++++|+++++++.+|+.|+||||+||||+|
T Consensus 263 K~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v 342 (627)
T PRK00290 263 KIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342 (627)
T ss_pred HHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHH
Confidence 99999999999998876542 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEE
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~ 868 (1023)
++.|+++| +.++..++|||+|||+|||++|+.+++ +++++.+.|++|++||++..++.+.+|||+|+++|++++.
T Consensus 343 ~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~ 417 (627)
T PRK00290 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQ 417 (627)
T ss_pred HHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceE
Confidence 99999999 567788999999999999999999986 3567899999999999999999999999999999999999
Q ss_pred EEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 869 ~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
+|++..++|+.+.|.||||++....+|..||++.|.++|+.++|.++|+|+|++|.||+|+|++.+..+|+..++.+.
T Consensus 418 ~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~-- 495 (627)
T PRK00290 418 VFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITIT-- 495 (627)
T ss_pred EEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEec--
Confidence 999999999999999999999999999999999999999999998899999999999999999998888765544332
Q ss_pred cccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 949 RGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+ ..+||+++++++++++.+|..+|+..+++.++||+||+|||.+|+++
T Consensus 496 ------------------------~-~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l 543 (627)
T PRK00290 496 ------------------------A-SSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTL 543 (627)
T ss_pred ------------------------c-ccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23699999999999999999999999999999999999999999986
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=542.83 Aligned_cols=358 Identities=58% Similarity=0.892 Sum_probs=334.1
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+.++++|||||||||||+|++++.++.++|+++.||.++||++||++|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 180 ~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~ 259 (595)
T TIGR02350 180 KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEK 259 (595)
T ss_pred CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HhhhcCCCceeEEEEecccC----CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFE----GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 787 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~ 787 (1023)
+|+.||.+.++.+.++.+.. +.++.++|||++|+++++|+++++.++++++|+++++++.+|+.|+||||+||||+
T Consensus 260 aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~ 339 (595)
T TIGR02350 260 AKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPA 339 (595)
T ss_pred HHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChH
Confidence 99999999999998887654 25788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceE
Q psy6736 788 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 788 v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~ 867 (1023)
|++.|+++|+ .++...+|||+|||+|||++|+.+++. ++++.+.|++|++||++..++.+.+|||+|+++|++++
T Consensus 340 v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~ 414 (595)
T TIGR02350 340 VQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKS 414 (595)
T ss_pred HHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCCccce
Confidence 9999999995 677889999999999999999999763 56789999999999999999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecc
Q psy6736 868 QTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITN 947 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~ 947 (1023)
.+|++..++|+.+.|.||||++....+|..||++.+.++|+.++|.++|+|+|++|.||+|+|++.+..+|++..+.+.
T Consensus 415 ~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~- 493 (595)
T TIGR02350 415 QVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITIT- 493 (595)
T ss_pred EeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEec-
Confidence 9999999999999999999999999999999999999999999998899999999999999999999888775544332
Q ss_pred ccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 948 DRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
.. .+||+++++++++++.++..+|+.++++.++||+||+|||.+|+++
T Consensus 494 -------------------------~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l 541 (595)
T TIGR02350 494 -------------------------AS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTL 541 (595)
T ss_pred -------------------------cc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3699999999999999999999999999999999999999999987
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=536.18 Aligned_cols=353 Identities=42% Similarity=0.661 Sum_probs=326.0
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+||+++.++.++|++++||.+|||+|||.+|++|+.+++ +.+...+++.+.+|+.+||++
T Consensus 179 ~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~a 254 (599)
T TIGR01991 179 SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAA 254 (599)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999764 344456788899999999999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||.+.++.+.++. +|.++.++|||++|+++++|+++++.++++++|+++++++.+|+.|+||||+||||+|+++|
T Consensus 255 K~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l 332 (599)
T TIGR01991 255 KEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAV 332 (599)
T ss_pred HHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHH
Confidence 9999999988888864 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEe
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~ 872 (1023)
+++|+ ..+..++|||+|||+|||++|+.+++. +..+++.+.|++|++||+++.+|.+.+|||||+++|++++..|++
T Consensus 333 ~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t 409 (599)
T TIGR01991 333 AELFG-QEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTT 409 (599)
T ss_pred HHHhC-CCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEE
Confidence 99995 556778999999999999999999863 344678999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccc
Q psy6736 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952 (1023)
Q Consensus 873 ~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~ 952 (1023)
..++|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..+.+.
T Consensus 410 ~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~------ 483 (599)
T TIGR01991 410 YKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVK------ 483 (599)
T ss_pred ccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecc------
Confidence 99999999999999999999999999999999999999999999999999999999999999988876554332
Q ss_pred cccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+ ..+||+++++++.+++.++..+|+..++..++||++|+|+|.++..+
T Consensus 484 --------------------~-~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 531 (599)
T TIGR01991 484 --------------------P-SYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAAL 531 (599)
T ss_pred --------------------c-ccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23599999999999999999999999999999999999999998765
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=532.04 Aligned_cols=349 Identities=40% Similarity=0.652 Sum_probs=320.4
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+||+++.++.++|++++||.+|||+|||.+|++|+.++++. +...+++++.+|+.+||++
T Consensus 199 ~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~----~~~~~~~~~~~L~~~ae~a 274 (616)
T PRK05183 199 QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGL----SPRLDPEDQRLLLDAARAA 274 (616)
T ss_pred CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC----CcCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999987643 3335778899999999999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||.+.++.+.+..+ ...|||++|+++++|+++++..+++++|+++++.+++|+.|+||||+||||+|+++|
T Consensus 275 K~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l 348 (616)
T PRK05183 275 KEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAV 348 (616)
T ss_pred HHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHH
Confidence 99999999888887532 234999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEe
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~ 872 (1023)
+++|+ ..+..++|||+|||+|||++|+.+++. ....++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++
T Consensus 349 ~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t 425 (616)
T PRK05183 349 GEFFG-RTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTT 425 (616)
T ss_pred HHHhc-cCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEe
Confidence 99995 455678999999999999999999864 234678999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccc
Q psy6736 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952 (1023)
Q Consensus 873 ~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~ 952 (1023)
..++|+.+.|.||||++....+|..||++.|.++|+.++|.++|+|+|++|.||+|+|++.+..+|++..+.+.+
T Consensus 426 ~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~----- 500 (616)
T PRK05183 426 FKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKP----- 500 (616)
T ss_pred ccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEecccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999998876554432
Q ss_pred cccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
..+||+++++++++++.++..+|+..+++.++||++|+|+|.+++++
T Consensus 501 ----------------------~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 547 (616)
T PRK05183 501 ----------------------SYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAAL 547 (616)
T ss_pred ----------------------cccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23599999999999999999999999999999999999999999876
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=507.63 Aligned_cols=335 Identities=37% Similarity=0.579 Sum_probs=303.1
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+|++++.++.++|++++||.+|||+|||.+|++|++++|... .+.+ .+..||++
T Consensus 191 ~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~------~~~~----~~~~~eka 260 (595)
T PRK01433 191 QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLP------NSID----TLQLAKKA 260 (595)
T ss_pred CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCC------CCHH----HHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999887421 1222 23359999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||.+..... ..++|||++|+++++|++++++.+++++|++++ ..+|+.|+||||+||||+|+++|
T Consensus 261 K~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l 328 (595)
T PRK01433 261 KETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDEL 328 (595)
T ss_pred HHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHH
Confidence 999998765321 168899999999999999999999999999998 67899999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEe
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~ 872 (1023)
+++|+ .++..+.|||+|||+|||++|+.+++. ..++.+.|++|++||+++.+|.+.+|||||++||+++++.|++
T Consensus 329 ~~~f~-~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t 403 (595)
T PRK01433 329 YKAFK-VDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTT 403 (595)
T ss_pred HHHhC-CCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEe
Confidence 99994 667788999999999999999999753 3468899999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccc
Q psy6736 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952 (1023)
Q Consensus 873 ~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~ 952 (1023)
..++|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..||++..+.+..
T Consensus 404 ~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~----- 478 (595)
T PRK01433 404 YADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKP----- 478 (595)
T ss_pred ecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999876655432
Q ss_pred cccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
..+||++|+++++++.+++..+|+..++..+++|++|+++|.+++.+
T Consensus 479 ----------------------~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 525 (595)
T PRK01433 479 ----------------------NHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAI 525 (595)
T ss_pred ----------------------CCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23599999999999999999999999999999999999999988654
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=499.89 Aligned_cols=358 Identities=58% Similarity=0.889 Sum_probs=339.8
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
++.+||||||||||||+||+++.++.++|+++.||.+|||+|||.+|++|+..+|..+++.++..++.++++|+.+||++
T Consensus 170 ~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~a 249 (579)
T COG0443 170 KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKA 249 (579)
T ss_pred CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||...++.+.++++..+.++..+|||++||+++.+++.+++.++..+|.++++++.+|+.|+||||+||||.|++.+
T Consensus 250 K~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v 329 (579)
T COG0443 250 KIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329 (579)
T ss_pred HHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHH
Confidence 99999999999999887777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEe
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~ 872 (1023)
+++|+ +++...+|||++||.|||++|+.+++.. .++++.|++|+++|++..++.+.++|++|+.+|.++...|++
T Consensus 330 ~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t 404 (579)
T COG0443 330 KEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFST 404 (579)
T ss_pred HHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc----cCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEe
Confidence 99995 7888999999999999999999998743 288999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccc
Q psy6736 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952 (1023)
Q Consensus 873 ~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~ 952 (1023)
..|+|..+.++++||++....+|..+|.|.+.++|+.+.|.+.|+|+|.+|.||+++|++.+..+|++..++|.
T Consensus 405 ~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~------ 478 (579)
T COG0443 405 AADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIK------ 478 (579)
T ss_pred ecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEe------
Confidence 99999999999999999999999999999999999999999999999999999999999988888887665544
Q ss_pred cccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
...+ |++++++.+.+....+.+.|+..++..+.+|..|+++|.++..++
T Consensus 479 --------------------~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~ 527 (579)
T COG0443 479 --------------------ASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALK 527 (579)
T ss_pred --------------------cCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4445 999999999999999999999999999999999999999987664
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=495.92 Aligned_cols=360 Identities=48% Similarity=0.810 Sum_probs=330.5
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.++++|||||||||||+|++++.++.++++++.|+..+||++||.+|++|+.++|..+++.+...+++.+.+|+.+||++
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~ 265 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKA 265 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHH
T ss_pred cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccccccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hhhcCC--CceeEEEEecccC-CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHH
Q psy6736 713 KRTLSS--STQASIEIDSLFE-GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 789 (1023)
Q Consensus 713 K~~Ls~--~~~~~~~i~~~~~-~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 789 (1023)
|+.||. +.+..+.++.+.+ |.++.+.|||++|+++++|+++++.++++++|++++++.++|+.|+||||+||+|+|+
T Consensus 266 K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~ 345 (602)
T PF00012_consen 266 KEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQ 345 (602)
T ss_dssp HHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHH
T ss_pred ccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhh
Confidence 999999 6777788887777 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEE
Q psy6736 790 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQT 869 (1023)
Q Consensus 790 ~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~ 869 (1023)
+.|++.|+ ..+..++||++|||+|||++|+.+++. ++.+++.+.|++|++||++..++.+.+++++|+++|...+..
T Consensus 346 ~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~ 422 (602)
T PF00012_consen 346 EALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKS 422 (602)
T ss_dssp HHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEE
T ss_pred hhhhhccc-cccccccccccccccccccchhhhccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999996 778889999999999999999999863 456788999999999999999999999999999999999999
Q ss_pred EEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEecccc
Q psy6736 870 FTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDR 949 (1023)
Q Consensus 870 f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~ 949 (1023)
|++..++|+.+.+.||+|+.....+|..||++.+.++++.+.|.++|+|+|++|.||+|+|++.+..++.+..+.+.
T Consensus 423 ~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~--- 499 (602)
T PF00012_consen 423 FKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVK--- 499 (602)
T ss_dssp EEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEE---
T ss_pred cchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999877766544333
Q ss_pred ccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 950 GRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
.... ++++++++++++++++..+|+.+++..+++|+||+|+|++|+++.
T Consensus 500 -----------------------~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~ 548 (602)
T PF00012_consen 500 -----------------------KKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLE 548 (602)
T ss_dssp -----------------------SSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------cccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHH
Confidence 2233 999999999999999999999999999999999999999999874
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=433.91 Aligned_cols=384 Identities=30% Similarity=0.518 Sum_probs=328.2
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++++|+++|||++++.+|++.+..|.+.++++.+|.++||++||++|.+||+++|+.+|+++...+++++.||+..||+
T Consensus 193 ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EK 272 (727)
T KOG0103|consen 193 EKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEK 272 (727)
T ss_pred cCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
.|+.||++...+.+|++++++.|.+..|+|++|+++|.|+++|+..++.++|+++++..+||+.|.+|||+||+|.|+++
T Consensus 273 lKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~ 352 (727)
T KOG0103|consen 273 LKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEM 352 (727)
T ss_pred HHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEee----C-ceeEEeecCCCCCCcce
Q psy6736 792 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA----G-GVMTALIKRNTTIPTKQ 866 (1023)
Q Consensus 792 l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~----~-~~~~~ii~~~~~lP~~~ 866 (1023)
|+++| ++.+.+++|.|+|||+|||+++|++++ .++++.+.+.|+.||+|.+... + +....+||+|.++|.++
T Consensus 353 Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K 429 (727)
T KOG0103|consen 353 ISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVK 429 (727)
T ss_pred HHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCce
Confidence 99999 789999999999999999999999987 6899999999999999988743 2 55578999999999999
Q ss_pred EEEEEeecCCCCcEEEEEee-cCccccccCceeeEEEEecCCCCCC-CCCeEEEEEEECCCccEEEEEEEcccCceee-E
Q psy6736 867 TQTFTTYSDNQPGVLIQVYE-GERAMTKDNNLLGKFELTSIPPAPR-GVPQIEVTFDIDANGILNVTAIEKSTGKENK-I 943 (1023)
Q Consensus 867 ~~~f~~~~~~q~~i~i~iye-g~~~~~~~~~~ig~~~l~~~~~~~~-g~~~i~v~f~id~~gil~V~a~~~~~~~~~~-~ 943 (1023)
..+|.+.. .+.+.++. +....+.....|+++.+.++.+... ...+++|+..++.+|++.|...-.-...+.. +
T Consensus 430 ~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev 505 (727)
T KOG0103|consen 430 LLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEV 505 (727)
T ss_pred EEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhcc
Confidence 99987742 35555544 4455665668999999998877666 4558999999999999988742221111111 1
Q ss_pred E---eccccccccc--cccccccccCcccceEEeeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6736 944 T---ITNDRGRRYL--NVTAIEKSTGKENKITITNDRG-RLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNM 1017 (1023)
Q Consensus 944 ~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~ 1017 (1023)
. ...+.+.... ...++.|.+.+...+.+..... +|+..+++..++++.+|..+|+...++.++||+||+|||.|
T Consensus 506 ~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~ 585 (727)
T KOG0103|consen 506 PEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDM 585 (727)
T ss_pred ccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHH
Confidence 1 1111111010 1122224445556676666554 79999999999999999999999999999999999999999
Q ss_pred hhccC
Q psy6736 1018 KSKGR 1022 (1023)
Q Consensus 1018 r~k~~ 1022 (1023)
|+||-
T Consensus 586 R~kl~ 590 (727)
T KOG0103|consen 586 RDKLS 590 (727)
T ss_pred HHHhh
Confidence 99973
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=426.64 Aligned_cols=336 Identities=20% Similarity=0.237 Sum_probs=270.2
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccc-cC-----Cccccce----------------eeEEEeccCeEEee---
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDN-LG-----QGLIKPA----------------FSGIRLEEGAVMLY--- 55 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~-~g-----~~~~~ps----------------~v~~~~~~~~~~~G--- 55 (1023)
||+|++++|.+ |++++|.+++||++.+.... .+ ...+.|- -...+.+++.+++|
T Consensus 14 va~~~~~~~~l-i~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~A 92 (450)
T PRK11678 14 VAVMRDGKPRL-LPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDVTAQSVFFGLAA 92 (450)
T ss_pred eEEeeCCceEE-EEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccccccccchhHHH
Confidence 68999999999 99999999999998664110 00 0000000 00122245677777
Q ss_pred -------cCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCC-
Q psy6736 56 -------CSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFN- 127 (1023)
Q Consensus 56 -------~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~- 127 (1023)
+..++.++.||+++|...+.... ...++++++++| ++|++.|+.++|.++.++|||||++|+
T Consensus 93 ~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~---~~~~e~l~a~iL-------~~lk~~ae~~~g~~v~~~VItvPa~F~~ 162 (450)
T PRK11678 93 LAQYLEDPEEVYFVKSPKSFLGASGLKPQQ---VALFEDLVCAMM-------LHIKQQAEAQLQAAITQAVIGRPVNFQG 162 (450)
T ss_pred HHhhccCCCCceEEecchhhhccCCCCccc---eeCHHHHHHHHH-------HHHHHHHHHHhCCCCCcEEEEECCcccc
Confidence 34455588999999986543332 245999999999 999999999999999999999999998
Q ss_pred ----HHHHHH---HHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCC
Q psy6736 128 ----ISSVKS---TKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDG 200 (1023)
Q Consensus 128 ----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 200 (1023)
+.||++ |++||+.||+++++|++||+|||++|+.... .+..+||||+||||+|+|++++.++
T Consensus 163 ~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-----------~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 163 LGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-----------EEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----------CCCeEEEEEeCCCeEEEEEEEecCc
Confidence 788876 6999999999999999999999999986433 5788999999999999999999653
Q ss_pred -------EEEEEEecCCCCccHHHHHHHHH-HHHHHHHHhh----hccCc------------------------------
Q psy6736 201 -------IFEVKSTAGDTHLGGEDFDNRMV-NHFVQEFKRK----YKKDL------------------------------ 238 (1023)
Q Consensus 201 -------~~~v~~~~~~~~lGG~~~D~~l~-~~l~~~~~~~----~~~~~------------------------------ 238 (1023)
..++++++| ..+||+|||..|+ +++...|+.. .+.++
T Consensus 232 ~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 310 (450)
T PRK11678 232 WRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLN 310 (450)
T ss_pred ccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHH
Confidence 468999998 6899999999998 6788777521 11110
Q ss_pred -----cccHHHH------------HHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHH
Q psy6736 239 -----TTNKRAL------------RRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301 (1023)
Q Consensus 239 -----~~~~~~~------------~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 301 (1023)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+. .++..+|||++|+++++++++++..+
T Consensus 311 ~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~ 388 (450)
T PRK11678 311 DLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGLEEAISQPLARILEL 388 (450)
T ss_pred HHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHH
Confidence 0123233 3688999999999999999999888654 35779999999999999999999999
Q ss_pred HHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 302 i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
|+++|+++++. ++.|+||||+|++|+|++.|++.||+.++. ..+|.++||.|+|++|..+
T Consensus 389 i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 389 VQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHHHHHhh
Confidence 99999999976 489999999999999999999999776665 5599999999999999753
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=366.67 Aligned_cols=381 Identities=29% Similarity=0.458 Sum_probs=300.8
Q ss_pred CCcceEEEEEeCCceEEEEEEEEe----------CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhc--cCcchhH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIE----------DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNK 699 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~----------~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~--~~~~~~~ 699 (1023)
...+++||||||.|++.+|++.+. ...++++++++|..|||..|..+|.+|+.+.|.+.++ .+...++
T Consensus 212 ~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~np 291 (902)
T KOG0104|consen 212 ETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNP 291 (902)
T ss_pred CCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCH
Confidence 345889999999999999999874 2578999999999999999999999999999998776 4678899
Q ss_pred HHHHHHHHHHHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q psy6736 700 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 779 (1023)
Q Consensus 700 ~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~Lv 779 (1023)
|++++|.++|+++|..||+|..+.+.|+++.+++||...|||++||++|++++.|+..||.++|..++++.++|+.|+|+
T Consensus 292 rAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~ 371 (902)
T KOG0104|consen 292 RAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILF 371 (902)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCc--------e
Q psy6736 780 GGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG--------V 851 (1023)
Q Consensus 780 GG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~--------~ 851 (1023)
||+||+|.||+.|.++.+..++...+|.|||+++||+++||.|+. +++++++.+.|.+.|+|-++..+. .
T Consensus 372 Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~ 449 (902)
T KOG0104|consen 372 GGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFKVKPFNVVDASVYPYLVEFETEPGIHALKSV 449 (902)
T ss_pred cCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--cccccceeeeecccccEEEEeccCCcccccchh
Confidence 999999999999999998889999999999999999999999975 788999999999999988875432 2
Q ss_pred eEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCC----CC---CCCeEEEEEEECC
Q psy6736 852 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPA----PR---GVPQIEVTFDIDA 924 (1023)
Q Consensus 852 ~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~----~~---g~~~i~v~f~id~ 924 (1023)
...+|+++.++|.++..+|+..+++ +.+.+--|.-. ..+-.+++.++... +. ....|++.|.+|.
T Consensus 450 ~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~ 521 (902)
T KOG0104|consen 450 KRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDL 521 (902)
T ss_pred HHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcC
Confidence 2348999999999987888776554 33332222110 22336677655422 11 2346999999999
Q ss_pred CccEEEEEEEcccCc--------eeeEE--e--------cc-ccc--c--------ccc---------cccccccccCc-
Q psy6736 925 NGILNVTAIEKSTGK--------ENKIT--I--------TN-DRG--R--------RYL---------NVTAIEKSTGK- 965 (1023)
Q Consensus 925 ~gil~V~a~~~~~~~--------~~~~~--~--------~~-~~~--~--------~~~---------~~~~~~~~~~~- 965 (1023)
+|++.|+..+.-+.+ +.... . .. ++. + ... .......++.+
T Consensus 522 Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~ 601 (902)
T KOG0104|consen 522 SGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKE 601 (902)
T ss_pred cCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCcccccccccccccccccccccccc
Confidence 999998865432211 00000 0 00 000 0 000 00000000000
Q ss_pred -------------c----cceEEeeC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 966 -------------E----NKITITND---RGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 966 -------------~----~~~~~~~~---~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
. ..+.|+.. .+.|++..++....+++.+.++|+.+.++++|.|.||+|+|++.+++-
T Consensus 602 t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~ 678 (902)
T KOG0104|consen 602 TSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLD 678 (902)
T ss_pred chhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11333322 236999999999999999999999999999999999999999999863
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=308.83 Aligned_cols=288 Identities=18% Similarity=0.266 Sum_probs=219.5
Q ss_pred ccceeeEEEeccCeE-EeecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCC
Q psy6736 38 IKPAFSGIRLEEGAV-MLYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDG 116 (1023)
Q Consensus 38 ~~ps~v~~~~~~~~~-~~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~ 116 (1023)
-.||+++++.+.+.+ .+|..... ...+..+...+..+...+.+...++.+.+| +++++.+.........
T Consensus 27 ~~psvv~~~~~~~~i~~vG~~A~~---~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l-------~~~~~~~~~~~~~~~p 96 (336)
T PRK13928 27 NEPSVVAIDKNTNKVLAVGEEARR---MVGRTPGNIVAIRPLRDGVIADYDVTEKML-------KYFINKACGKRFFSKP 96 (336)
T ss_pred ccCCEEEEECCCCeEEEecHHHHH---hhhcCCCCEEEEccCCCCeEecHHHHHHHH-------HHHHHHHhccCCCCCC
Confidence 368888888333444 55633111 111111221122233445677777878888 8888665433233445
Q ss_pred cceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEE
Q psy6736 117 QNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILT 196 (1023)
Q Consensus 117 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 196 (1023)
.+|||||++|++.||+++++|++.||++++.+++||+|||++|+.... ++..++|||+||||||+++++
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----------~~~~~lVvDiGggttdvsvv~ 165 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-----------QPSGNMVVDIGGGTTDIAVLS 165 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-----------CCCeEEEEEeCCCeEEEEEEE
Confidence 799999999999999999999999999999999999999999987543 466799999999999999999
Q ss_pred EeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC----ceEEEEe--
Q psy6736 197 IEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEID-- 270 (1023)
Q Consensus 197 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~----~~~i~i~-- 270 (1023)
.+... ..++..+||.+||+.|++++..+|+...+ ...||++|+.++... ...+.+.
T Consensus 166 ~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~ 227 (336)
T PRK13928 166 LGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGR 227 (336)
T ss_pred eCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecc
Confidence 85322 24578999999999999999987752211 247999999987532 1233332
Q ss_pred cccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcC--CCccCcC-eEEEEcCCCCcHHHHHHHHHHcCCcccccc
Q psy6736 271 SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAK--MDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347 (1023)
Q Consensus 271 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~ 347 (1023)
.+..+.+..++|+|++|++++.++++++.+.|.+.|+.++ +....++ .|+|+||+|++|.|++.|++.| +.++...
T Consensus 228 ~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~ 306 (336)
T PRK13928 228 DLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIA 306 (336)
T ss_pred cccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceec
Confidence 2344566789999999999999999999999999999986 4456677 7999999999999999999999 6788888
Q ss_pred CCCchhHHhHHHHHHHHH
Q psy6736 348 INPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 348 ~~pd~aVa~GAa~~a~~l 365 (1023)
.||++|||+|||+++..+
T Consensus 307 ~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 307 EDPISCVALGTGKMLENI 324 (336)
T ss_pred CCHHHHHHHHHHHHHhch
Confidence 899999999999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=299.76 Aligned_cols=284 Identities=16% Similarity=0.268 Sum_probs=219.9
Q ss_pred cceeeEEEeccCe-EEeecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCC-
Q psy6736 39 KPAFSGIRLEEGA-VMLYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDG- 116 (1023)
Q Consensus 39 ~ps~v~~~~~~~~-~~~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~- 116 (1023)
.||+++++.+++. +.+|... .....+..+.-....+.+.+.+..-++++.+| ++++..++..++..+.
T Consensus 29 ~ps~va~~~~~~~~~~vG~~A---~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l-------~~~~~~~~~~l~~~~~~ 98 (335)
T PRK13929 29 EPSVVAVDTETKAVLAIGTEA---KNMIGKTPGKIVAVRPMKDGVIADYDMTTDLL-------KQIMKKAGKNIGMTFRK 98 (335)
T ss_pred CCcEEEEECCCCeEEEeCHHH---HHhhhcCCCcEEEEecCCCCccCCHHHHHHHH-------HHHHHHHHHhcCCCCCC
Confidence 5888888733333 5666221 11111112221122233344566668889999 9999999888886654
Q ss_pred -cceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEE
Q psy6736 117 -QNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSIL 195 (1023)
Q Consensus 117 -~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 195 (1023)
.+|||||++|++.||+++.+|++.||++++.+++||+|||++|+.... ++..++|+|+||||||++++
T Consensus 99 ~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----------~~~~~lvvDiG~gtt~v~vi 167 (335)
T PRK13929 99 PNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD-----------EPVANVVVDIGGGTTEVAII 167 (335)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC-----------CCceEEEEEeCCCeEEEEEE
Confidence 799999999999999999999999999999999999999999987543 56789999999999999999
Q ss_pred EEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC----ceEEEEe-
Q psy6736 196 TIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEID- 270 (1023)
Q Consensus 196 ~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~----~~~i~i~- 270 (1023)
++++.. ..++..+||.+||+.|.+++.+.|. ... . ...||++|+.++... ...+.+.
T Consensus 168 ~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~~----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g 229 (335)
T PRK13929 168 SFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKYN----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRG 229 (335)
T ss_pred EeCCEE-----EecCcCCHHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeC
Confidence 875422 2456789999999999999987653 111 1 247999999998632 2223332
Q ss_pred -cccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC--ccCcC-eEEEEcCCCCcHHHHHHHHHHcCCccccc
Q psy6736 271 -SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNK 346 (1023)
Q Consensus 271 -~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~ 346 (1023)
++..+.+..+++++++|++++.+++.++.+.|.+.|++++.. ...++ .|+|+||+|++|.++++|++.| +.++..
T Consensus 230 ~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~ 308 (335)
T PRK13929 230 RDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHV 308 (335)
T ss_pred CccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCcee
Confidence 233455678999999999999999999999999999998643 35677 6999999999999999999999 678888
Q ss_pred cCCCchhHHhHHHHHH
Q psy6736 347 SINPDEAVAYGAAVQA 362 (1023)
Q Consensus 347 ~~~pd~aVa~GAa~~a 362 (1023)
..||+++||.||+..-
T Consensus 309 ~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 309 AANPLESVAIGTGRSL 324 (335)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8899999999999774
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=286.39 Aligned_cols=288 Identities=19% Similarity=0.302 Sum_probs=210.5
Q ss_pred cccceeeEEEeccCe-EEeecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcC
Q psy6736 37 LIKPAFSGIRLEEGA-VMLYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVD 115 (1023)
Q Consensus 37 ~~~ps~v~~~~~~~~-~~~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~ 115 (1023)
...||++++....+. +.+|...... ..+..+.-.+..+.+.+.+..-+.+..+| ++++........ .-
T Consensus 28 ~~~ps~v~~~~~~~~~~~vG~~a~~~---~~~~~~~~~~~~pi~~G~i~d~~~~~~ll-------~~~~~~~~~~~~-~~ 96 (334)
T PRK13927 28 LNEPSVVAIRTDTKKVLAVGEEAKQM---LGRTPGNIVAIRPMKDGVIADFDVTEKML-------KYFIKKVHKNFR-PS 96 (334)
T ss_pred EecCCEEEEECCCCeEEEecHHHHHH---hhcCCCCEEEEecCCCCeecCHHHHHHHH-------HHHHHHHhhccC-CC
Confidence 358899998733233 5677221000 00000111111122223333344555566 676665544322 22
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSIL 195 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 195 (1023)
..+|+|||++|++.||+++++|++.||++.+.+++||+|||++|+.... ++..++|||+||||||++++
T Consensus 97 ~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-----------~~~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 97 PRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-----------EPTGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-----------CCCeEEEEEeCCCeEEEEEE
Confidence 4899999999999999999999999999999999999999999987543 45678999999999999999
Q ss_pred EEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCc----eEEEE--
Q psy6736 196 TIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ----ASIEI-- 269 (1023)
Q Consensus 196 ~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~----~~i~i-- 269 (1023)
+..+.. ..++..+||.+||+.|.+++.+++.. .. . ...||++|+.++.... ..+.+
T Consensus 166 ~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~ 227 (334)
T PRK13927 166 SLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNL----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRG 227 (334)
T ss_pred ecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCc----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeC
Confidence 885432 24557899999999999999876641 11 1 2368999999875432 22333
Q ss_pred ecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC--ccCcC-eEEEEcCCCCcHHHHHHHHHHcCCccccc
Q psy6736 270 DSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNK 346 (1023)
Q Consensus 270 ~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~ 346 (1023)
+.+..+.+..++|+|++|++++.+.++++.+.|.++|++++.. ...++ .|+|+||+|++|.++++|++.| +.++..
T Consensus 228 ~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~ 306 (334)
T PRK13927 228 RDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHV 306 (334)
T ss_pred cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEe
Confidence 2334556678899999999999999999999999999998643 22334 5999999999999999999999 678888
Q ss_pred cCCCchhHHhHHHHHHHHH
Q psy6736 347 SINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 347 ~~~pd~aVa~GAa~~a~~l 365 (1023)
..||+++||+||++++..+
T Consensus 307 ~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 307 AEDPLTCVARGTGKALENI 325 (334)
T ss_pred cCCHHHHHHHHHHHHHhhH
Confidence 8899999999999998653
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=278.42 Aligned_cols=247 Identities=22% Similarity=0.312 Sum_probs=192.6
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhc
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~ 160 (1023)
+.+..-+.+..++ ++++.......+.....+|+|||++|+..||+++++|++.||++.+.+++||+|||++|+
T Consensus 71 G~i~d~~~~~~~~-------~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g 143 (333)
T TIGR00904 71 GVIADFEVTEKMI-------KYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAG 143 (333)
T ss_pred CEEEcHHHHHHHH-------HHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcC
Confidence 3444445555566 676665543333233489999999999999999999999999999999999999999998
Q ss_pred cccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccc
Q psy6736 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 240 (1023)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~ 240 (1023)
.... ++..++|||+||||||+++++..+.. ..++..+||++||+.|++++.++|. ....
T Consensus 144 ~~~~-----------~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~----~~~~- 202 (333)
T TIGR00904 144 LPVE-----------EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYN----LLIG- 202 (333)
T ss_pred Cccc-----------CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhc----ccCC-
Confidence 6543 45678999999999999999885432 2456789999999999999987653 1111
Q ss_pred cHHHHHHHHHHHHHHhHHcCCCCc-----eEEEEec--ccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCc
Q psy6736 241 NKRALRRLRTACERAKRTLSSSTQ-----ASIEIDS--LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDK 313 (1023)
Q Consensus 241 ~~~~~~~L~~~ae~~K~~Ls~~~~-----~~i~i~~--~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~ 313 (1023)
+..||++|+.++.... ..+.+.. ...+......+++++|.+++.+.++++.+.+.+.|+.++...
T Consensus 203 --------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~ 274 (333)
T TIGR00904 203 --------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPEL 274 (333)
T ss_pred --------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 2478999999976322 1222211 122334567899999999999999999999999999887542
Q ss_pred -cCc-C-eEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 314 -AQI-H-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 314 -~~i-~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
.++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 275 ~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 275 AADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred hhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 244 3 6999999999999999999999 688888899999999999998754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=273.71 Aligned_cols=288 Identities=19% Similarity=0.260 Sum_probs=212.4
Q ss_pred ccceeeEEEeccC-eEEeecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCC
Q psy6736 38 IKPAFSGIRLEEG-AVMLYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDG 116 (1023)
Q Consensus 38 ~~ps~v~~~~~~~-~~~~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~ 116 (1023)
..||+|++...++ .+.+|....... .+..+.-.+..+.+.+.+..-+....+| +++++.+.........
T Consensus 32 ~~ps~v~~~~~~~~~~~vG~~A~~~~---~~~~~~~~~~~pi~~G~i~d~~~~e~ll-------~~~~~~~~~~~~~~~~ 101 (335)
T PRK13930 32 NEPSVVAIDTKTGKVLAVGEEAKEML---GRTPGNIEAIRPLKDGVIADFEATEAML-------RYFIKKARGRRFFRKP 101 (335)
T ss_pred ecCCEEEEECCCCeEEEEcHHHHHhh---hcCCCCeEEeecCCCCeEcCHHHHHHHH-------HHHHHHHhhcccCCCC
Confidence 3699999873233 467772210000 0000000111122223444445667777 8888777654455567
Q ss_pred cceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEE
Q psy6736 117 QNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILT 196 (1023)
Q Consensus 117 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 196 (1023)
.+|+|+|++|+..||+++.+|++.+|++.+.+++||+|||++|+.... .+..++|||+||||||++++.
T Consensus 102 ~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~-----------~~~~~lVvDiG~gttdvs~v~ 170 (335)
T PRK13930 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT-----------EPVGNMVVDIGGGTTEVAVIS 170 (335)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC-----------CCCceEEEEeCCCeEEEEEEE
Confidence 899999999999999999999999999999999999999999986543 345679999999999999998
Q ss_pred EeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCc----eEEEEe--
Q psy6736 197 IEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ----ASIEID-- 270 (1023)
Q Consensus 197 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~----~~i~i~-- 270 (1023)
.+... ..+...+||.+||+.|.+++.+++. .... ...||++|+.++.... ..+.+.
T Consensus 171 ~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~ 232 (335)
T PRK13930 171 LGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGR 232 (335)
T ss_pred eCCEE-----eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECc
Confidence 75422 2456889999999999999987653 1111 1478999999976432 123332
Q ss_pred cccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC--ccCcCe-EEEEcCCCCcHHHHHHHHHHcCCcccccc
Q psy6736 271 SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKS 347 (1023)
Q Consensus 271 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~~~ 347 (1023)
....+.+..+.|++++|++++.+.++++.+.+.+.|+.+... ...++. |+|+||+|++|.++++|++.| +.++...
T Consensus 233 ~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~ 311 (335)
T PRK13930 233 DLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIA 311 (335)
T ss_pred cCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceec
Confidence 223445567899999999999999999999999999987533 233454 999999999999999999999 5778888
Q ss_pred CCCchhHHhHHHHHHHHH
Q psy6736 348 INPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 348 ~~pd~aVa~GAa~~a~~l 365 (1023)
.+|+++||.||++.+...
T Consensus 312 ~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 312 EDPLTCVARGTGKALENL 329 (335)
T ss_pred CCHHHHHHHHHHHHHhCh
Confidence 899999999999998643
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=259.36 Aligned_cols=209 Identities=22% Similarity=0.237 Sum_probs=178.7
Q ss_pred cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHH
Q psy6736 77 GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAA 156 (1023)
Q Consensus 77 ~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAa 156 (1023)
...++.+...+.++++| +++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||
T Consensus 30 ~~~~g~I~d~~~~~~~l-------~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa 102 (239)
T TIGR02529 30 VVRDGIVVDFLGAVEIV-------RRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAA 102 (239)
T ss_pred cccCCeEEEhHHHHHHH-------HHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHH
Confidence 34556788888999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhcc
Q psy6736 157 IAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236 (1023)
Q Consensus 157 l~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~ 236 (1023)
++|+.. ..+|+|+||||||+++++.+. + .. ..+..+||++||+.|++++.-.
T Consensus 103 ~~~~~~----------------~~~vvDiGggtt~i~i~~~G~--i--~~-~~~~~~GG~~it~~Ia~~~~i~------- 154 (239)
T TIGR02529 103 AVLQIK----------------NGAVVDVGGGTTGISILKKGK--V--IY-SADEPTGGTHMSLVLAGAYGIS------- 154 (239)
T ss_pred HHhcCC----------------CcEEEEeCCCcEEEEEEECCe--E--EE-EEeeecchHHHHHHHHHHhCCC-------
Confidence 988532 149999999999999986532 2 22 4467899999999987654311
Q ss_pred CccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCc
Q psy6736 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 316 (1023)
Q Consensus 237 ~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i 316 (1023)
+.+||++|+.++. .+++.+++.++++++.+.+++.|++.+ +
T Consensus 155 ------------~~~AE~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~ 195 (239)
T TIGR02529 155 ------------FEEAEEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----V 195 (239)
T ss_pred ------------HHHHHHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----C
Confidence 1478999987641 456778999999999999999998643 5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 317 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 317 ~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
+.|+|+||+|++|.+++.|++.| +.++..+.||++++|.|||+
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 78999999999999999999999 78888899999999999986
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=252.16 Aligned_cols=284 Identities=20% Similarity=0.288 Sum_probs=208.1
Q ss_pred cceeeEEEeccCeEE-eecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCc
Q psy6736 39 KPAFSGIRLEEGAVM-LYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQ 117 (1023)
Q Consensus 39 ~ps~v~~~~~~~~~~-~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~ 117 (1023)
.||+++++...+.+. +| ..+..+..+......+..+.+.+.+...+++..+| +++.+.+.......-..
T Consensus 26 epSvVA~~~~~~~i~avG---~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l-------~~~l~k~~~~~~~~~p~ 95 (326)
T PF06723_consen 26 EPSVVAYDKDTGKILAVG---DEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEML-------RYFLKKALGRRSFFRPR 95 (326)
T ss_dssp EES-EEEETTT--EEEES---HHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHH-------HHHHHHHHTSS-SS--E
T ss_pred cCcEEEEECCCCeEEEEh---HHHHHHhhcCCCccEEEccccCCcccCHHHHHHHH-------HHHHHHhccCCCCCCCe
Confidence 577777774444443 33 23334444555555566677778888889999898 99999887643334468
Q ss_pred ceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEE
Q psy6736 118 NEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTI 197 (1023)
Q Consensus 118 ~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 197 (1023)
++|+||+.-++.+|+++.+|+..||.+.+.|++||.|||+..+..-. ++...||+|+||||||++++..
T Consensus 96 vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~-----------~~~g~miVDIG~GtTdiavisl 164 (326)
T PF06723_consen 96 VVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF-----------EPRGSMIVDIGGGTTDIAVISL 164 (326)
T ss_dssp EEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT-----------SSS-EEEEEE-SS-EEEEEEET
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC-----------CCCceEEEEECCCeEEEEEEEC
Confidence 99999999999999999999999999999999999999999988765 6788999999999999999976
Q ss_pred eCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC----ceEEEE--ec
Q psy6736 198 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----QASIEI--DS 271 (1023)
Q Consensus 198 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~----~~~i~i--~~ 271 (1023)
++ .+. +....+||++||++|.+|+.++|.-. -=...||++|+.++... ...+.+ .+
T Consensus 165 gg-iv~----s~si~~gG~~~DeaI~~~ir~~y~l~-------------Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd 226 (326)
T PF06723_consen 165 GG-IVA----SRSIRIGGDDIDEAIIRYIREKYNLL-------------IGERTAEKIKIEIGSASPPEEEESMEVRGRD 226 (326)
T ss_dssp TE-EEE----EEEES-SHHHHHHHHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEE
T ss_pred CC-EEE----EEEEEecCcchhHHHHHHHHHhhCcc-------------cCHHHHHHHHHhcceeeccCCCceEEEECcc
Confidence 32 222 22257899999999999999998511 11237899999987642 223344 35
Q ss_pred ccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCc-cCc--CeEEEEcCCCCcHHHHHHHHHHcCCccccccC
Q psy6736 272 LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDK-AQI--HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 348 (1023)
Q Consensus 272 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i--~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~ 348 (1023)
+..|..-.+.|+.+++.+++.+.+.+|.+.|+++|+...-.. .|| ++|+|+||+|+++.+.++|++.+ +.++...-
T Consensus 227 ~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~ 305 (326)
T PF06723_consen 227 LITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVAD 305 (326)
T ss_dssp TTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-S
T ss_pred ccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcC
Confidence 677888999999999999999999999999999999864321 243 46999999999999999999999 79999999
Q ss_pred CCchhHHhHHHHHH
Q psy6736 349 NPDEAVAYGAAVQA 362 (1023)
Q Consensus 349 ~pd~aVa~GAa~~a 362 (1023)
||..|||.||....
T Consensus 306 ~P~~~va~G~~~~l 319 (326)
T PF06723_consen 306 DPLTAVARGAGKLL 319 (326)
T ss_dssp STTTHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998754
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=231.74 Aligned_cols=289 Identities=18% Similarity=0.253 Sum_probs=233.5
Q ss_pred cceeeEEEe--ccCeEEeecCCCceeeeeecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhC-CcC
Q psy6736 39 KPAFSGIRL--EEGAVMLYCSDGYTAGWINSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILR-KVD 115 (1023)
Q Consensus 39 ~ps~v~~~~--~~~~~~~G~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~-~~~ 115 (1023)
.||||+++. ..+.++ ..+..+..++.+.+++.....+.+++.+...+++..+| +|+++.+..... ...
T Consensus 31 ePSVVAi~~~~~~~~v~--aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml-------~~fik~~~~~~~~~~~ 101 (342)
T COG1077 31 EPSVVAIESEGKTKVVL--AVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELML-------KYFIKKVHKNGSSFPK 101 (342)
T ss_pred CceEEEEeecCCCceEE--EehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHH-------HHHHHHhccCCCCCCC
Confidence 566776664 233333 34556667778888888888889999999999999999 999988864333 455
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSIL 195 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 195 (1023)
..++++||..-++.+|+|+++|++.||.+.+.++.||.|||+..+..-. ++..-||||+||||||++++
T Consensus 102 prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~-----------ep~G~mvvDIGgGTTevaVI 170 (342)
T COG1077 102 PRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM-----------EPTGSMVVDIGGGTTEVAVI 170 (342)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc-----------CCCCCEEEEeCCCceeEEEE
Confidence 6799999999999999999999999999999999999999998877654 56677999999999999999
Q ss_pred EEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC--------ceEE
Q psy6736 196 TIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST--------QASI 267 (1023)
Q Consensus 196 ~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~--------~~~i 267 (1023)
.+.+-.. +....+||+.||+++.+|+.++|+--.+ -+.||++|+...... +..+
T Consensus 171 Slggiv~-----~~Sirv~GD~~De~Ii~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV 232 (342)
T COG1077 171 SLGGIVS-----SSSVRVGGDKMDEAIIVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEV 232 (342)
T ss_pred EecCEEE-----EeeEEEecchhhHHHHHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeE
Confidence 9955322 2236799999999999999999872211 235888998875432 2334
Q ss_pred EEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC--ccCcCe-EEEEcCCCCcHHHHHHHHHHcCCccc
Q psy6736 268 EIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKEL 344 (1023)
Q Consensus 268 ~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i 344 (1023)
.-.++..|..-.++++.+++.+.+++.++.|++.++..|+...-. .+-++. ++|+||+|.+..+.+.|++.. +.++
T Consensus 233 ~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv 311 (342)
T COG1077 233 RGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPV 311 (342)
T ss_pred EeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeE
Confidence 445667788889999999999999999999999999999986533 222344 999999999999999999998 7888
Q ss_pred cccCCCchhHHhHHHHHHHHHh
Q psy6736 345 NKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 345 ~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
....+|-.|||.|+......+.
T Consensus 312 ~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 312 IIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred EECCChHHHHHhccchhhhhhH
Confidence 8888999999999998877654
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=260.42 Aligned_cols=185 Identities=25% Similarity=0.340 Sum_probs=153.1
Q ss_pred CCCcceEEEEEeCCceEEEEEEEEeCC-------EEEEEEecCCCCCcHHHHHHHHH-HHHHHHHHhh----hccCc---
Q psy6736 631 GSGERNVLIFDLGGGTFDVSILTIEDG-------IFEVKSTAGDTHLGGEDFDNRMV-NHFVQEFKRK----YKKDL--- 695 (1023)
Q Consensus 631 ~~~~~~vlV~D~GggT~dvsi~~~~~~-------~~~v~~~~gd~~lGG~~~D~~l~-~~~~~~~~~~----~~~~~--- 695 (1023)
.++++++|||||||||||+||+++.++ ..+|++++| .++||+|||.+|+ +++...|... .+.++
T Consensus 205 ~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~ 283 (450)
T PRK11678 205 LTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSL 283 (450)
T ss_pred cCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcch
Confidence 356788999999999999999998654 468999999 6899999999998 6777777421 11100
Q ss_pred --------------------------------chhHHHH------------HHHHHHHHHHhhhcCCCceeEEEEecccC
Q psy6736 696 --------------------------------TTNKRAL------------RRLRTACERAKRTLSSSTQASIEIDSLFE 731 (1023)
Q Consensus 696 --------------------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~ 731 (1023)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+.
T Consensus 284 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~- 362 (450)
T PRK11678 284 PFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS- 362 (450)
T ss_pred hhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC-
Confidence 0122222 3688999999999999999999887654
Q ss_pred CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccce
Q psy6736 732 GVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 811 (1023)
Q Consensus 732 ~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aV 811 (1023)
.++..+|||++|+++++++++++..+++++|+++++. ++.|+||||+|+||.|++.|++.||..++ ...+|.++|
T Consensus 363 -~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~sV 437 (450)
T PRK11678 363 -DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFGSV 437 (450)
T ss_pred -CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcchH
Confidence 4577899999999999999999999999999999976 47899999999999999999999976555 467999999
Q ss_pred ecchHHHHHHH
Q psy6736 812 AYGAAVQAAIL 822 (1023)
Q Consensus 812 a~GAa~~a~~l 822 (1023)
|.|+|++|..+
T Consensus 438 a~Gla~~a~~~ 448 (450)
T PRK11678 438 TAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHhh
Confidence 99999999653
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=236.74 Aligned_cols=242 Identities=24% Similarity=0.279 Sum_probs=192.0
Q ss_pred cceeeEEEeccCeEEee--cCCCceeeeeecccCC-cCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcC
Q psy6736 39 KPAFSGIRLEEGAVMLY--CSDGYTAGWINSITGD-LTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVD 115 (1023)
Q Consensus 39 ~ps~v~~~~~~~~~~~G--~~~~~~~~~~k~~~g~-~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~ 115 (1023)
.+-++++|..+.++.+= ..... ..+- ..+....+.+.+...+....+| +++++.|+.++|.++
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~-------~~~~~~~~~~~vr~G~i~di~~a~~~i-------~~~~~~ae~~~g~~i 88 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQ-------PVAGALEWADVVRDGIVVDFIGAVTIV-------RRLKATLEEKLGREL 88 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCC-------EEEEEeccccccCCCEEeeHHHHHHHH-------HHHHHHHHHHhCCCc
Confidence 45577777666665531 11000 1111 1133344445566677777787 999999999999999
Q ss_pred CcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSIL 195 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 195 (1023)
..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..+|+|+||||||++++
T Consensus 89 ~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----------------~~~vvDIGggtt~i~v~ 152 (267)
T PRK15080 89 THAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----------------NGAVVDIGGGTTGISIL 152 (267)
T ss_pred CeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------------CcEEEEeCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999887431 15899999999999997
Q ss_pred EEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC
Q psy6736 196 TIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 275 (1023)
Q Consensus 196 ~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~ 275 (1023)
+- +.+. . .++..+||++||+.|++++.-. +.+||++|+.++
T Consensus 153 ~~--g~~~--~-~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~--------------- 193 (267)
T PRK15080 153 KD--GKVV--Y-SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK--------------- 193 (267)
T ss_pred EC--CeEE--E-EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC---------------
Confidence 54 3321 1 3567999999999998775321 247899998753
Q ss_pred ceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHH
Q psy6736 276 VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 355 (1023)
Q Consensus 276 ~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa 355 (1023)
+++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.| +.++....||+.++|
T Consensus 194 -------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a 260 (267)
T PRK15080 194 -------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTP 260 (267)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHH
Confidence 357889999999999999999999864 5789999999999999999999999 788888999999999
Q ss_pred hHHHHHH
Q psy6736 356 YGAAVQA 362 (1023)
Q Consensus 356 ~GAa~~a 362 (1023)
.|||+|+
T Consensus 261 ~Gaa~~~ 267 (267)
T PRK15080 261 LGIALSC 267 (267)
T ss_pred HHHHhhC
Confidence 9999874
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=211.36 Aligned_cols=191 Identities=24% Similarity=0.332 Sum_probs=150.8
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+||||||++++.. +.... ....
T Consensus 161 ~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-----------~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i 224 (371)
T TIGR01174 161 RNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-----------KELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVI 224 (371)
T ss_pred HHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-----------hcCCEEEEEeCCCcEEEEEEEC--CEEEE---Eeee
Confidence 678889999999999999999999998854322 4567999999999999999864 32221 2346
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCC------CceEEEEecccCCceeEEEecHH
Q psy6736 212 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSITRA 285 (1023)
Q Consensus 212 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~ 285 (1023)
.+||++||+.|.+.+.- .+.+||++|+.++.. .+..+.++... .+....++|+
T Consensus 225 ~~GG~~it~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~ 283 (371)
T TIGR01174 225 PIGGNHITKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRK 283 (371)
T ss_pred cchHHHHHHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHH
Confidence 79999999998765421 234899999999863 24456665443 3566899999
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHHcCCCccCcCe-EEEEcCCCCcHHHHHHHHHHcCCcccccc------------CCCc
Q psy6736 286 RFEELNADLFRGTMEPVE-KSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKS------------INPD 351 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~~~------------~~pd 351 (1023)
+|++++.+.++++.+.+. +.|++++.. .+++. |+|+||+|++|.+++.+++.| +.++... -+|.
T Consensus 284 ~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~ 361 (371)
T TIGR01174 284 ELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPE 361 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcH
Confidence 999999999999999997 999998876 67777 999999999999999999999 4433211 2677
Q ss_pred hhHHhHHHHH
Q psy6736 352 EAVAYGAAVQ 361 (1023)
Q Consensus 352 ~aVa~GAa~~ 361 (1023)
.++|.|.++|
T Consensus 362 ~~~a~Gl~~~ 371 (371)
T TIGR01174 362 YSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHhC
Confidence 8888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=207.02 Aligned_cols=172 Identities=20% Similarity=0.362 Sum_probs=138.3
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|||+||||||+|+++... .+ ..++..+||++||+.|++++.+++....+ ...||+
T Consensus 144 ~~~~~~lVvDiGggttdvsvv~~g~-~~----~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~ 205 (336)
T PRK13928 144 SQPSGNMVVDIGGGTTDIAVLSLGG-IV----TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEE 205 (336)
T ss_pred cCCCeEEEEEeCCCeEEEEEEEeCC-EE----EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHH
Confidence 4456799999999999999998642 21 34578999999999999999877642211 246899
Q ss_pred HhhhcCCCc----eeEEEEe--cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCccccc-eEEEecCc
Q psy6736 712 AKRTLSSST----QASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAK--MDKAQIH-DIVLVGGS 782 (1023)
Q Consensus 712 ~K~~Ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~i~-~V~LvGG~ 782 (1023)
+|+.++... ...+.+. ++..+.+..++|+|++|++++.++++++.+.+.+.|+.++ +..+.++ .|+|+||+
T Consensus 206 lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~ 285 (336)
T PRK13928 206 IKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGG 285 (336)
T ss_pred HHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcc
Confidence 999886431 1233332 2344566778999999999999999999999999999986 4556777 79999999
Q ss_pred cCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 783 TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 783 srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
|++|.|+++|++.| +.++....||++|||+|||+++..+
T Consensus 286 s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 286 ALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred cchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999999 5677788899999999999998764
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=202.36 Aligned_cols=194 Identities=21% Similarity=0.275 Sum_probs=148.2
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
+.+.+|++.||+++..++.||.|+|+++..... ++..++|+|+||||||++++. ++.+. .....
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-----------~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i 232 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-----------RELGVCVVDIGGGTMDIAVYT--GGALR---HTKVI 232 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-----------hhcCeEEEEeCCCceEEEEEE--CCEEE---EEeee
Confidence 445679999999999999999999999865432 467799999999999999997 34322 23346
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCC------CceEEEEecccCCceeEEEecHH
Q psy6736 212 HLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEGVDFYTSITRA 285 (1023)
Q Consensus 212 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~ 285 (1023)
.+||++|++.|+..+.-. ...||++|+.+... .+..+.++...+.. ...++|.
T Consensus 233 ~~GG~~it~dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~ 291 (420)
T PRK09472 233 PYAGNVVTSDIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQ 291 (420)
T ss_pred echHHHHHHHHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHH
Confidence 799999999998655321 24899999775432 23456665443322 2588999
Q ss_pred HHHHHhHHHHHHHHHHHHH-------HHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccc------------
Q psy6736 286 RFEELNADLFRGTMEPVEK-------SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK------------ 346 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~------------ 346 (1023)
+|.+++.+.++++++.+.+ .+..+++....++.|+|+||+|++|.|++.+++.| +.++..
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~ 370 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDY 370 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhh
Confidence 9999999977777766654 55667777778899999999999999999999999 444322
Q ss_pred cCCCchhHHhHHHHHHH
Q psy6736 347 SINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 347 ~~~pd~aVa~GAa~~a~ 363 (1023)
..+|..|+|.|.++|+.
T Consensus 371 ~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 371 AQEPYYSTAVGLLHYGK 387 (420)
T ss_pred cCCcHHHHHHHHHHHhh
Confidence 13899999999999976
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=196.52 Aligned_cols=172 Identities=21% Similarity=0.377 Sum_probs=134.9
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|||+||||||+++++..+.. ..++.++||++||+.|++++.+++.. ... ...||+
T Consensus 145 ~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~----~~~---------~~~ae~ 206 (334)
T PRK13927 145 TEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNL----LIG---------ERTAER 206 (334)
T ss_pred cCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCc----CcC---------HHHHHH
Confidence 345678999999999999999865321 33557899999999999999866531 111 246899
Q ss_pred HhhhcCCCce----eEEEE--ecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ccccc-eEEEecCc
Q psy6736 712 AKRTLSSSTQ----ASIEI--DSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGS 782 (1023)
Q Consensus 712 ~K~~Ls~~~~----~~~~i--~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~LvGG~ 782 (1023)
+|+.++.... ..+.+ +.+..+.+..++|+|++|++++.+.++++.+.+.++|+++... .+-++ .|+|+||+
T Consensus 207 iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~ 286 (334)
T PRK13927 207 IKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGG 286 (334)
T ss_pred HHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECch
Confidence 9998875322 22333 2334556678899999999999999999999999999988643 23344 59999999
Q ss_pred cCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 783 TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 783 srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
|++|.++++|++.| +.++....||+++||+|||+++...
T Consensus 287 s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 287 ALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred hhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 99999999999999 5778888899999999999998653
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=185.87 Aligned_cols=169 Identities=17% Similarity=0.352 Sum_probs=134.2
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|+|+||||+|++++.+.+ .+ ..++..+||++||+.|++++.+.+. .... ...||+
T Consensus 147 ~~~~~~lvvDiG~gtt~v~vi~~~~-~~----~~~~~~~GG~~id~~l~~~l~~~~~----~~~~---------~~~AE~ 208 (335)
T PRK13929 147 DEPVANVVVDIGGGTTEVAIISFGG-VV----SCHSIRIGGDQLDEDIVSFVRKKYN----LLIG---------ERTAEQ 208 (335)
T ss_pred CCCceEEEEEeCCCeEEEEEEEeCC-EE----EecCcCCHHHHHHHHHHHHHHHHhC----cCcC---------HHHHHH
Confidence 3457799999999999999998643 21 3456789999999999999987553 2111 257999
Q ss_pred HhhhcCCCc----eeEEEEe--cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC--Cccccc-eEEEecCc
Q psy6736 712 AKRTLSSST----QASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKM--DKAQIH-DIVLVGGS 782 (1023)
Q Consensus 712 ~K~~Ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~i~-~V~LvGG~ 782 (1023)
+|+.++... ...+.+. ++..+....+++++++|++++.+++.++.+.+.+.|+++.. ..+.++ .|+|+||+
T Consensus 209 iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~ 288 (335)
T PRK13929 209 VKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGG 288 (335)
T ss_pred HHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchh
Confidence 999997631 2223332 23345557889999999999999999999999999999864 346677 69999999
Q ss_pred cCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHH
Q psy6736 783 TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 783 srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
|++|.++++|++.| +.++....||+++||+||+..-
T Consensus 289 s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 289 ALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred hhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999999 5677778899999999999774
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=184.62 Aligned_cols=171 Identities=23% Similarity=0.372 Sum_probs=132.1
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|||+||||||+++++..+-. ..++.++||++||+.|++++.+++. .... +..||+
T Consensus 147 ~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~----~~~~---------~~~ae~ 208 (333)
T TIGR00904 147 EEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYN----LLIG---------EQTAER 208 (333)
T ss_pred cCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhc----ccCC---------HHHHHH
Confidence 345779999999999999999875321 3356789999999999999986653 1111 257899
Q ss_pred HhhhcCCCce-----eEEEEec--ccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-ccc-c-eEEEecC
Q psy6736 712 AKRTLSSSTQ-----ASIEIDS--LFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDK-AQI-H-DIVLVGG 781 (1023)
Q Consensus 712 ~K~~Ls~~~~-----~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~i-~-~V~LvGG 781 (1023)
+|+.++.... ..+.+.. ...+......|++++|.+++.+.++++.+.+.+.|+.+.... .++ + .|+|+||
T Consensus 209 lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GG 288 (333)
T TIGR00904 209 IKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGG 288 (333)
T ss_pred HHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECc
Confidence 9999865321 1222221 122334567899999999999999999999999999876432 244 3 6999999
Q ss_pred ccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 782 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 782 ~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 289 ss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 289 GALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred ccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999 677888899999999999999743
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=180.88 Aligned_cols=169 Identities=21% Similarity=0.337 Sum_probs=131.3
Q ss_pred cceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHh
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 713 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 713 (1023)
+..++|||+||||||++++..... . ..+...+||.+||+.|++++.+++. .... ...||++|
T Consensus 151 ~~~~lVvDiG~gttdvs~v~~g~~----~-~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K 212 (335)
T PRK13930 151 PVGNMVVDIGGGTTEVAVISLGGI----V-YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIK 212 (335)
T ss_pred CCceEEEEeCCCeEEEEEEEeCCE----E-eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHH
Confidence 456899999999999999985431 1 2456789999999999999987642 2111 24689999
Q ss_pred hhcCCCce----eEEEEe--cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ccccce-EEEecCccC
Q psy6736 714 RTLSSSTQ----ASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGSTR 784 (1023)
Q Consensus 714 ~~Ls~~~~----~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~i~~-V~LvGG~sr 784 (1023)
+.++.... ..+.+. ....+....+.|++++|++++.+.++++.+.+.++|+.+... .+.++. |+|+||+|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ 292 (335)
T PRK13930 213 IEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGAL 292 (335)
T ss_pred HHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhc
Confidence 99875432 123332 223444567899999999999999999999999999987533 233464 999999999
Q ss_pred cHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 785 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 785 ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+|.++++|++.| +.++....+|+++||+||++++..
T Consensus 293 ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 293 LRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred chhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 999999999999 567777889999999999999854
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-16 Score=172.41 Aligned_cols=250 Identities=22% Similarity=0.329 Sum_probs=192.4
Q ss_pred eecccCCcCccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCH-HH-------------
Q psy6736 65 INSITGDLTPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNI-SS------------- 130 (1023)
Q Consensus 65 ~k~~~g~~~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~-~q------------- 130 (1023)
++++.....+.++.. +.++.+++ .++.+.|......+...++...|-.|.- .|
T Consensus 86 i~s~~~~g~v~i~~~-~eIt~~DI------------~rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G~r 152 (418)
T COG0849 86 IKSQNVNGEVSISEE-KEITQEDI------------ERVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSGVR 152 (418)
T ss_pred eEEEeeEEEEEcCCC-CccCHHHH------------HHHHHHHHhhccCCCceEEEEeeeEEEECCccccCCccccccce
Confidence 344444443444443 68888888 5666777666655557777777755521 11
Q ss_pred --------------HHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEE
Q psy6736 131 --------------VKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILT 196 (1023)
Q Consensus 131 --------------r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 196 (1023)
-+.+.+|.+.+|+++..++.+|.|+|.+...+.. ++.+++++|+||||||+++++
T Consensus 153 L~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-----------kelGv~lIDiG~GTTdIai~~ 221 (418)
T COG0849 153 LEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-----------KELGVALIDIGGGTTDIAIYK 221 (418)
T ss_pred EEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-----------HhcCeEEEEeCCCcEEEEEEE
Confidence 2779999999999999999999999998766554 678899999999999999997
Q ss_pred EeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC------ceEEEEe
Q psy6736 197 IEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST------QASIEID 270 (1023)
Q Consensus 197 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~------~~~i~i~ 270 (1023)
-+. + .+.+...+||++++..|+..|.-.+. .||+.|+...... +..+.++
T Consensus 222 ~G~--l---~~~~~ipvgG~~vT~DIa~~l~t~~~-------------------~AE~iK~~~g~a~~~~~~~~~~i~v~ 277 (418)
T COG0849 222 NGA--L---RYTGVIPVGGDHVTKDIAKGLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVP 277 (418)
T ss_pred CCE--E---EEEeeEeeCccHHHHHHHHHhCCCHH-------------------HHHHHHHHcCccccCcCCCcceEecc
Confidence 532 2 22445789999999999988877665 7899999886543 3345565
Q ss_pred cccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccc----
Q psy6736 271 SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK---- 346 (1023)
Q Consensus 271 ~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~---- 346 (1023)
...+. ....+||.++.+++++.+.+++..+++.|++.++...-...|+|+||++.+|.+.+..++.|+ .+++.
T Consensus 278 ~vg~~--~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~ 354 (418)
T COG0849 278 SVGSD--IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPL 354 (418)
T ss_pred cCCCc--ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCc
Confidence 44333 367899999999999999999999999999999976666789999999999999999999994 33211
Q ss_pred --------cCCCchhHHhHHHHHHHHH
Q psy6736 347 --------SINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 347 --------~~~pd~aVa~GAa~~a~~l 365 (1023)
..+|..+.|.|..++++..
T Consensus 355 ~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 355 NIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cccCchhhccCchhhhhHHHHHHHhhc
Confidence 2368899999999998753
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=158.03 Aligned_cols=131 Identities=22% Similarity=0.350 Sum_probs=109.7
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhc
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 716 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 716 (1023)
.+|+|+||||||+++++ ++.+.. + ++..+||++||+.|++++. .+ +.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~~~--~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKVVY--S-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEEE--E-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhcc
Confidence 58999999999999975 554332 2 4678999999999987642 11 35788888875
Q ss_pred CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhh
Q psy6736 717 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 796 (1023)
Q Consensus 717 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 796 (1023)
+ +++++.++++++++++.+.+++.|+.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 3 357889999999999999999999853 5789999999999999999999999
Q ss_pred cCcccCCCCCCccceecchHHHH
Q psy6736 797 NGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 797 ~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+.++..+.||+.++|.|||+||
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 6778889999999999999875
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=166.61 Aligned_cols=159 Identities=23% Similarity=0.369 Sum_probs=121.3
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|+|+||||+|++++. ++.+... ....+||++||+.|+..+. ..+.+||+
T Consensus 193 ~~~~~~~vvDiG~gtt~i~i~~--~g~~~~~---~~i~~GG~~it~~i~~~l~-------------------~~~~~AE~ 248 (371)
T TIGR01174 193 EKELGVCLIDIGGGTTDIAVYT--GGSIRYT---KVIPIGGNHITKDIAKALR-------------------TPLEEAER 248 (371)
T ss_pred hhcCCEEEEEeCCCcEEEEEEE--CCEEEEE---eeecchHHHHHHHHHHHhC-------------------CCHHHHHH
Confidence 3456799999999999999986 4543332 3367999999998876431 12467899
Q ss_pred HhhhcCCC------ceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCccccce-EEEecCcc
Q psy6736 712 AKRTLSSS------TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVE-KSLRDAKMDKAQIHD-IVLVGGST 783 (1023)
Q Consensus 712 ~K~~Ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-V~LvGG~s 783 (1023)
+|+.++.. .+..+.++... .+....++|++|++++.+.++++.+.++ +.|++++.. ++++. |+|+||+|
T Consensus 249 lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S 325 (371)
T TIGR01174 249 IKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGA 325 (371)
T ss_pred HHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHH
Confidence 99998753 23456665443 3566899999999999999999999997 999998876 66777 99999999
Q ss_pred CcHHHHHHHHHhhcCcccCC------------CCCCccceecchHHH
Q psy6736 784 RIPKVQKLLQDFFNGKELNK------------SINPDEAVAYGAAVQ 818 (1023)
Q Consensus 784 rip~v~~~l~~~f~~~~~~~------------~~~p~~aVa~GAa~~ 818 (1023)
++|.+++.+++.|+. ++.. ..+|..++|.|.++|
T Consensus 326 ~ipgi~~~l~~~~~~-~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 326 QLEGIVELAEKVFDN-PVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred cccCHHHHHHHHhCC-CeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999999999999943 2211 125667777776653
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=153.26 Aligned_cols=129 Identities=20% Similarity=0.327 Sum_probs=105.7
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhc
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 716 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 716 (1023)
.+|+|+||||+|+++++ .+.+.. ..+..+||++||+.|++++. .+ +.+||++|+.+
T Consensus 110 ~~vvDiGggtt~i~i~~--~G~i~~---~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~ 165 (239)
T TIGR02529 110 GAVVDVGGGTTGISILK--KGKVIY---SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGH 165 (239)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEEE---EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhc
Confidence 59999999999999976 444332 34577999999998875431 11 25789999875
Q ss_pred CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhh
Q psy6736 717 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 796 (1023)
Q Consensus 717 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 796 (1023)
+. .+++.+++.++++++...+++.|++. .++.|+|+||+|++|.+++.+++.|
T Consensus 166 ~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l 218 (239)
T TIGR02529 166 KD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL 218 (239)
T ss_pred CC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh
Confidence 41 45677899999999999999999864 3578999999999999999999999
Q ss_pred cCcccCCCCCCccceecchHH
Q psy6736 797 NGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 797 ~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
+.++..+.||+++||.|||+
T Consensus 219 -g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 219 -GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred -CCCcccCCCCCeehhheeec
Confidence 67888899999999999986
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=160.61 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=120.3
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|+|+||||||+++++ +|.+....+ ..+||++|++.|+..+. . -+..||+
T Consensus 201 e~~~gv~vvDiGggtTdisv~~--~G~l~~~~~---i~~GG~~it~dIa~~l~--------i-----------~~~~AE~ 256 (420)
T PRK09472 201 ERELGVCVVDIGGGTMDIAVYT--GGALRHTKV---IPYAGNVVTSDIAYAFG--------T-----------PPSDAEA 256 (420)
T ss_pred hhhcCeEEEEeCCCceEEEEEE--CCEEEEEee---eechHHHHHHHHHHHhC--------c-----------CHHHHHH
Confidence 4567799999999999999997 565443332 56999999999875441 1 1357899
Q ss_pred HhhhcC----CC--ceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCCccccceEEE
Q psy6736 712 AKRTLS----SS--TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVE-------KSLRDAKMDKAQIHDIVL 778 (1023)
Q Consensus 712 ~K~~Ls----~~--~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~-------~~l~~~~~~~~~i~~V~L 778 (1023)
+|+... .. .+..+.++...... ...++|.+|.+++.+.++++++.+. ..|..+++....++.|+|
T Consensus 257 lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givL 334 (420)
T PRK09472 257 IKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVL 334 (420)
T ss_pred HHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEE
Confidence 986542 21 23456665443222 3489999999999997666666665 455677777778899999
Q ss_pred ecCccCcHHHHHHHHHhhcCcccCC------------CCCCccceecchHHHHHH
Q psy6736 779 VGGSTRIPKVQKLLQDFFNGKELNK------------SINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 779 vGG~srip~v~~~l~~~f~~~~~~~------------~~~p~~aVa~GAa~~a~~ 821 (1023)
+||+|++|.|++++++.|+ .++.. ..+|..|+|.|.++|+..
T Consensus 335 tGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 335 TGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred eCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 9999999999999999994 33221 248999999999999863
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=149.32 Aligned_cols=167 Identities=23% Similarity=0.382 Sum_probs=125.6
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
.++...||+|+||||+|++++. -+.+....+ ...||++||++|.+|+.+++.-. + =...||+
T Consensus 142 ~~~~g~miVDIG~GtTdiavis--lggiv~s~s---i~~gG~~~DeaI~~~ir~~y~l~----I---------g~~tAE~ 203 (326)
T PF06723_consen 142 FEPRGSMIVDIGGGTTDIAVIS--LGGIVASRS---IRIGGDDIDEAIIRYIREKYNLL----I---------GERTAEK 203 (326)
T ss_dssp TSSS-EEEEEE-SS-EEEEEEE--TTEEEEEEE---ES-SHHHHHHHHHHHHHHHHSEE---------------HHHHHH
T ss_pred CCCCceEEEEECCCeEEEEEEE--CCCEEEEEE---EEecCcchhHHHHHHHHHhhCcc----c---------CHHHHHH
Confidence 3456799999999999999996 343322222 46899999999999999987421 1 1236889
Q ss_pred HhhhcCCCc----eeEEEEe--cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---cc--ceEEEec
Q psy6736 712 AKRTLSSST----QASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKA---QI--HDIVLVG 780 (1023)
Q Consensus 712 ~K~~Ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~i--~~V~LvG 780 (1023)
+|+.++... ...+.+. ++..|....+.|+-+++.+.+.+.+.++.+.++++|+.. .++ || +.|+|+|
T Consensus 204 iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtG 281 (326)
T PF06723_consen 204 IKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTG 281 (326)
T ss_dssp HHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEES
T ss_pred HHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEC
Confidence 999886432 2234443 566788889999999999999999999999999999964 332 33 4699999
Q ss_pred CccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHH
Q psy6736 781 GSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 781 G~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
|+|+++.+.++|++.+ +.++....||..|||.||....
T Consensus 282 Gga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 282 GGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp GGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred hhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 9999999999999999 6889999999999999998765
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-14 Score=137.06 Aligned_cols=192 Identities=24% Similarity=0.309 Sum_probs=151.9
Q ss_pred hHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEE
Q psy6736 101 ILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNV 180 (1023)
Q Consensus 101 ~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~v 180 (1023)
+++++.+|+.+|..+.++.-++|+.-.....+...+..+.||++++..++||+|||.-..+.. -
T Consensus 79 rrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d----------------g 142 (277)
T COG4820 79 RRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD----------------G 142 (277)
T ss_pred HHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC----------------C
Confidence 899999999999999999999999998888888889999999999999999999986554433 2
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcC
Q psy6736 181 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 260 (1023)
Q Consensus 181 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls 260 (1023)
.|+|+|||||-+|+++-++-.+ +.|...||.++...|+-+..-.+ ++||..|+.--
T Consensus 143 ~VVDiGGGTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~ygi~~-------------------EeAE~~Kr~~k 198 (277)
T COG4820 143 GVVDIGGGTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGNYGISL-------------------EEAEQYKRGHK 198 (277)
T ss_pred cEEEeCCCcceeEEEEcCcEEE-----eccCCCCceeEEEEEecccCcCH-------------------hHHHHhhhccc
Confidence 7999999999999998755443 45677888887766654322222 26676665431
Q ss_pred CCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcC
Q psy6736 261 SSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340 (1023)
Q Consensus 261 ~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~ 340 (1023)
.. +|.-..+.|+++++.+.+.+-++..+ +..++|+||+|.-|.+.+..++.|
T Consensus 199 ~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l- 250 (277)
T COG4820 199 KG----------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL- 250 (277)
T ss_pred cc----------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-
Confidence 11 12222467889999999998888766 466999999999999999999999
Q ss_pred CccccccCCCchhHHhHHHH
Q psy6736 341 GKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 341 ~~~i~~~~~pd~aVa~GAa~ 360 (1023)
+.++..+..|....-.|-|+
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccccccCCCcceechhhhhh
Confidence 88898888888777777664
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=139.13 Aligned_cols=245 Identities=18% Similarity=0.122 Sum_probs=156.8
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHh
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKD-SGTIAGLNVLRIINEPTAAAIAY 159 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AAal~y 159 (1023)
+.+..-+....++ +++....-. ....-..++|++|..++..+|+.+.+ +.+..|+..+.++.+|.+|++++
T Consensus 69 G~i~d~~~~e~~~-------~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~ 140 (371)
T cd00012 69 GIVVDWDDMEKIW-------DHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYAS 140 (371)
T ss_pred CEEeCHHHHHHHH-------HHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhc
Confidence 3444445555555 565543211 12224679999999999888888766 56779999999999999999987
Q ss_pred ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCcc
Q psy6736 160 GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLT 239 (1023)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~ 239 (1023)
+. .+.+|+|+|+++|+++.+.- +.. +........+||.++|+.|.+++...... .+.
T Consensus 141 g~----------------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~~~- 197 (371)
T cd00012 141 GR----------------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKELLRERGYE---LNS- 197 (371)
T ss_pred CC----------------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHHHHHhcCCC---ccc-
Confidence 53 35799999999999988764 222 11222346899999999999988654310 011
Q ss_pred ccHHHHHHHHHHHHHHhHHcCCCCce-------------EEE-EecccCCceeEEEecHHHH---HHHhHHH-----HHH
Q psy6736 240 TNKRALRRLRTACERAKRTLSSSTQA-------------SIE-IDSLFEGVDFYTSITRARF---EELNADL-----FRG 297 (1023)
Q Consensus 240 ~~~~~~~~L~~~ae~~K~~Ls~~~~~-------------~i~-i~~~~~~~~~~~~itr~~~---e~~~~~~-----~~~ 297 (1023)
..-...++.+|+.+..-... ... ...+.++. .+.+..+.| |-++.|. ...
T Consensus 198 ------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~ 269 (371)
T cd00012 198 ------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVG 269 (371)
T ss_pred ------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCC
Confidence 11122456666654321100 000 01112222 345555444 2334432 337
Q ss_pred HHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHHHHHHHHHHcC----C-----ccccccCCCchhHHhHHHHHHHH
Q psy6736 298 TMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFN----G-----KELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 298 i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~----~-----~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
+.+.|.+++...... ..-++.|+|+||+|++|.+.++|.+.+. . ..+....+|..++-.||+++|..
T Consensus 270 i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 270 ISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 788888888876432 2335779999999999999999988763 1 12344568899999999999854
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=136.87 Aligned_cols=173 Identities=24% Similarity=0.405 Sum_probs=135.0
Q ss_pred CCCCccCCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHH
Q psy6736 624 PGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALR 703 (1023)
Q Consensus 624 ~~~~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1023)
+...+.+.+++-.++++|+||||+|+++++ +|.+....+ ..+||++++..|+.-|.-.+
T Consensus 192 a~a~L~~dEkelGv~lIDiG~GTTdIai~~--~G~l~~~~~---ipvgG~~vT~DIa~~l~t~~---------------- 250 (418)
T COG0849 192 ALAVLTEDEKELGVALIDIGGGTTDIAIYK--NGALRYTGV---IPVGGDHVTKDIAKGLKTPF---------------- 250 (418)
T ss_pred hhhccCcccHhcCeEEEEeCCCcEEEEEEE--CCEEEEEee---EeeCccHHHHHHHHHhCCCH----------------
Confidence 344566778889999999999999999987 676555444 66999999999987654333
Q ss_pred HHHHHHHHHhhhcCC------CceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q psy6736 704 RLRTACERAKRTLSS------STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIV 777 (1023)
Q Consensus 704 ~L~~~~e~~K~~Ls~------~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~ 777 (1023)
..||+.|+.... .....+.++...+. ....+||.++.+++++.+.+++..+++.|++.++...-...|+
T Consensus 251 ---~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvV 325 (418)
T COG0849 251 ---EEAERIKIKYGSALISLADDEETIEVPSVGSD--IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVV 325 (418)
T ss_pred ---HHHHHHHHHcCccccCcCCCcceEecccCCCc--ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEE
Confidence 367888877632 23345666554333 3778999999999999999999999999999999877778899
Q ss_pred EecCccCcHHHHHHHHHhhcCc-ccCC----------CCCCccceecchHHHHHHH
Q psy6736 778 LVGGSTRIPKVQKLLQDFFNGK-ELNK----------SINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 778 LvGG~srip~v~~~l~~~f~~~-~~~~----------~~~p~~aVa~GAa~~a~~l 822 (1023)
|+||++.||.+.+..++.|+.. ++.. ..+|..+.|.|..+|++..
T Consensus 326 lTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 326 LTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred EECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 9999999999999999999421 1111 2368899999999998754
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=126.30 Aligned_cols=170 Identities=19% Similarity=0.354 Sum_probs=132.1
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
..-||||+||||+|+.++.+.+ .+.- ....+||+.||++|++|+.++++--.+ . ..+|++|+
T Consensus 153 ~G~mvvDIGgGTTevaVISlgg-iv~~----~Sirv~GD~~De~Ii~yvr~~~nl~IG------e-------~taE~iK~ 214 (342)
T COG1077 153 TGSMVVDIGGGTTEVAVISLGG-IVSS----SSVRVGGDKMDEAIIVYVRKKYNLLIG------E-------RTAEKIKI 214 (342)
T ss_pred CCCEEEEeCCCceeEEEEEecC-EEEE----eeEEEecchhhHHHHHHHHHHhCeeec------H-------HHHHHHHH
Confidence 4578999999999999998743 2211 114689999999999999988753221 1 23677777
Q ss_pred hcCC--------CceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCccccce-EEEecCcc
Q psy6736 715 TLSS--------STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAK--MDKAQIHD-IVLVGGST 783 (1023)
Q Consensus 715 ~Ls~--------~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~i~~-V~LvGG~s 783 (1023)
.... ..+.++.-.++..|..-.++++-++..+..++.++++++.++..|+... +..+-++. ++|+||+|
T Consensus 215 eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGa 294 (342)
T COG1077 215 EIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGA 294 (342)
T ss_pred HhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchH
Confidence 7532 1223344445667777789999999999999999999999999999853 44444555 99999999
Q ss_pred CcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 784 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 784 rip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
.+..+.+.|++.. +.++....+|-.|||+|+......+.
T Consensus 295 lLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 295 LLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999987 66777888999999999998887653
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.4e-11 Score=135.58 Aligned_cols=245 Identities=18% Similarity=0.138 Sum_probs=152.0
Q ss_pred cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCC--cCCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchH
Q psy6736 77 GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRK--VDGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPT 153 (1023)
Q Consensus 77 ~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~--~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~ 153 (1023)
+.+.+.+..-+....++ +++... .++. .-..++||+|...+..+|+.+.+.+ +..|++.+.++.+|.
T Consensus 65 P~~~G~i~d~~~~e~i~-------~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~ 134 (373)
T smart00268 65 PIEHGIVENWDDMEKIW-------DYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAV 134 (373)
T ss_pred CCcCCEEeCHHHHHHHH-------HHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHH
Confidence 33445566666666666 666653 2332 2357899999999999999988776 577999999999999
Q ss_pred HHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhh
Q psy6736 154 AAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 233 (1023)
Q Consensus 154 AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~ 233 (1023)
||+++++ ..+.+|+|+|+++|+++.+.- +.. +........+||.++|+.|.+++...-.
T Consensus 135 ~a~~~~g----------------~~~~lVVDiG~~~t~v~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~-- 193 (373)
T smart00268 135 LSLYASG----------------RTTGLVIDSGDGVTHVVPVVD--GYV-LPHAIKRIDIAGRDLTDYLKELLSERGY-- 193 (373)
T ss_pred HHHHhCC----------------CCEEEEEecCCCcceEEEEEC--CEE-chhhheeccCcHHHHHHHHHHHHHhcCC--
Confidence 9998875 246799999999999998873 322 1122223579999999999988766100
Q ss_pred hccCccccHHHHHHHHHHHHHHhHHcCCCC-----------------ceEEEEecccCCceeEEEecHHHH---HHHhHH
Q psy6736 234 YKKDLTTNKRALRRLRTACERAKRTLSSST-----------------QASIEIDSLFEGVDFYTSITRARF---EELNAD 293 (1023)
Q Consensus 234 ~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~ 293 (1023)
.... ..-...++.+|+.+..-. ...... .+.+|..+ .+..+.| |-++.|
T Consensus 194 -~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~--~~~~er~~~~E~lf~p 262 (373)
T smart00268 194 -QFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTI--KVGNERFRIPEILFKP 262 (373)
T ss_pred -CCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE-ECCCCCEE--EEChHHeeCchhcCCc
Confidence 0000 011223445554432110 000011 12233333 3333322 223333
Q ss_pred H-----HHHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHHHHHHHHHHc----CC---ccccccCCCchhHHhHHH
Q psy6736 294 L-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----NG---KELNKSINPDEAVAYGAA 359 (1023)
Q Consensus 294 ~-----~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~---~~i~~~~~pd~aVa~GAa 359 (1023)
. ...+.+.|.++|..+... ..=.+.|+|+||+|++|.+.++|.+.+ +. ..+....++..++=.||+
T Consensus 263 ~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~s 342 (373)
T smart00268 263 ELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGS 342 (373)
T ss_pred hhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcc
Confidence 1 236778888888776432 112356999999999999999998776 21 123334456677778888
Q ss_pred HHHH
Q psy6736 360 VQAA 363 (1023)
Q Consensus 360 ~~a~ 363 (1023)
++|.
T Consensus 343 ilas 346 (373)
T smart00268 343 ILAS 346 (373)
T ss_pred cccC
Confidence 7774
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-10 Score=125.13 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=139.4
Q ss_pred cCCcce--EecCCCCCHHH-HHHHHHHHHHc------C------CceeeeecchHHHHHHhccccccCccccccCCCCCc
Q psy6736 114 VDGQNE--GLIPAYFNISS-VKSTKDSGTIA------G------LNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGER 178 (1023)
Q Consensus 114 ~~~~~v--itVPa~~~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~ 178 (1023)
.+.+++ ...|..+-..+ ++.+++..... | ++.+.++.||.+|.+++........ .....+..
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~---~~~~~~~~ 185 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVV---ADKAFEEG 185 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcc---cchhcccC
Confidence 344454 58996664344 46676654221 1 2346789999999888766532110 00011345
Q ss_pred EEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHH
Q psy6736 179 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 258 (1023)
Q Consensus 179 ~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~ 258 (1023)
.++|+|+|+||||++++. +..+. ...++....|..++.+.|.+++..+.. +..+ +. .++.+..+
T Consensus 186 ~ilvIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~---~~ie~~l~----- 249 (344)
T PRK13917 186 KVSVIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TP---YMLEKGLE----- 249 (344)
T ss_pred cEEEEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CH---HHHHHHHH-----
Confidence 789999999999999986 33332 233444778999999999888854321 2222 11 12221211
Q ss_pred cCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHH
Q psy6736 259 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 338 (1023)
Q Consensus 259 Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~ 338 (1023)
.. .+.+. .+.. +.+ ++++.++++++++++.+.|...+.. ..+++.|+|+||++++ +++.|++.
T Consensus 250 --~g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~ 312 (344)
T PRK13917 250 --YG---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHW 312 (344)
T ss_pred --cC---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHH
Confidence 11 11111 1111 222 4567788999999999988888753 3478999999999987 88999999
Q ss_pred cCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 339 FNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 339 f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
|+.. ....||..|.|+|...+|..+.+
T Consensus 313 f~~~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 313 YSDV--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred cCCe--EEcCChHHHHHHHHHHHHHHHhc
Confidence 9654 45679999999999999987654
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=114.17 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=131.5
Q ss_pred cCCcceEecCCCCCHHHHHHHHHHHHHc---------CCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEE
Q psy6736 114 VDGQNEGLIPAYFNISSVKSTKDSGTIA---------GLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFD 184 (1023)
Q Consensus 114 ~~~~~vitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D 184 (1023)
.+..+|+..|..+-..||+.+++..... -++.+.++.||.+|.++|....... . .....++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~-----~--~~~~~~lVID 173 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKL-----L--TGKEQSLIID 173 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCc-----c--cCcCcEEEEe
Confidence 3557999999888888899998876532 2355789999999988876543210 0 1455689999
Q ss_pred eCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCc
Q psy6736 185 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ 264 (1023)
Q Consensus 185 ~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~ 264 (1023)
+|++|||+.++. +..+ +...++....|-.++-+.+.+.+.+++. .+...+...+.. ....-|.
T Consensus 174 IG~~TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~~i~~---~l~~g~~------- 236 (320)
T TIGR03739 174 PGYFTFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDIDRIDL---ALRTGKQ------- 236 (320)
T ss_pred cCCCeeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHHHHHH---HHHhCCc-------
Confidence 999999997764 3443 3444555778988888888888777654 221111111111 1111110
Q ss_pred eEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccc
Q psy6736 265 ASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 344 (1023)
Q Consensus 265 ~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i 344 (1023)
+.+ .+.. +.|+ +.++ .....+++++..+.+.+. ...+++.|+|+||++. .+++.|++.||...+
T Consensus 237 --~~~----~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i 300 (320)
T TIGR03739 237 --PRI----YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRI 300 (320)
T ss_pred --eee----ccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCee
Confidence 000 1111 1222 1222 333444444444444332 2346899999999998 678999999977666
Q ss_pred cccCCCchhHHhHHHHHH
Q psy6736 345 NKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 345 ~~~~~pd~aVa~GAa~~a 362 (1023)
....||..|.|+|-..++
T Consensus 301 ~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 301 VEVDEPMFANVRGFQIAG 318 (320)
T ss_pred EecCCcHHHHHHHHHHhh
Confidence 667799999999987765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-08 Score=112.89 Aligned_cols=232 Identities=18% Similarity=0.095 Sum_probs=141.6
Q ss_pred cccccCHHHHHhHhhhhccCcchHHHHHHHHHhC--CcCCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHH
Q psy6736 79 RLKAVSAQELSRGVKAIFTAPDILKKKTSEDILR--KVDGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAA 155 (1023)
Q Consensus 79 ~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~--~~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AA 155 (1023)
..+.+..-+....++ .++... .++ ..-..+++|.|..++..+|+.+.+.+ +..|+.-+.+..+|.+|
T Consensus 74 ~~G~I~dwd~~e~l~-------~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~ls 143 (414)
T PTZ00280 74 KHGIVEDWDLMEKFW-------EQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLA 143 (414)
T ss_pred cCCEeCCHHHHHHHH-------HHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHh
Confidence 334555555555555 554432 232 22346899999999999999887665 55599999999999999
Q ss_pred HHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhc
Q psy6736 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235 (1023)
Q Consensus 156 al~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~ 235 (1023)
++++....... . .....+-+|+|+|+|+|+++.+.- |..-..+ .....+||.++|+.|.++|.++.
T Consensus 144 lya~~~~~~~~----~--~~g~~tglVVDiG~~~T~i~PV~~--G~~l~~~-~~~~~~GG~~lt~~L~~lL~~~~----- 209 (414)
T PTZ00280 144 LRASWTSKKAK----E--LGGTLTGTVIDSGDGVTHVIPVVD--GYVIGSS-IKHIPLAGRDITNFIQQMLRERG----- 209 (414)
T ss_pred Hhhhccccccc----c--cCCceeEEEEECCCCceEEEEEEC--CEEcccc-eEEecCcHHHHHHHHHHHHHHcC-----
Confidence 98763322100 0 001235599999999999987753 3221111 12257999999999999886532
Q ss_pred cCccccHHHHHHHHHHHHHHhHHcCCCCc-----------------eEEEEecccCCceeEEEecHHHHH---HHhHHHH
Q psy6736 236 KDLTTNKRALRRLRTACERAKRTLSSSTQ-----------------ASIEIDSLFEGVDFYTSITRARFE---ELNADLF 295 (1023)
Q Consensus 236 ~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~-----------------~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~ 295 (1023)
..+... .....++.+|+.+..-.. ..+..+....+....+.|..+.|. -++.|-+
T Consensus 210 ~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~ 284 (414)
T PTZ00280 210 EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEI 284 (414)
T ss_pred CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhh
Confidence 111111 112245566665532110 112222222234446777777664 3454532
Q ss_pred ------HHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHHHHHHHHHHc
Q psy6736 296 ------RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF 339 (1023)
Q Consensus 296 ------~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f 339 (1023)
..+.+.|.+.+.++... ..=.+.|+|+||+|.+|.+.++|++.+
T Consensus 285 ~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 285 FSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred cCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 14567777787776533 222366999999999999999998876
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=114.11 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCceeeeecchHHHHHHhcc-ccccCccccccCCCCCc-EEEEEEeCCceEEEEEEEEeCCEEEE
Q psy6736 127 NISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGL-DKKVGSTAVEYNGSGER-NVLIFDLGGGTFDVSILTIEDGIFEV 204 (1023)
Q Consensus 127 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~-~~~~~~~~~~~~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~v 204 (1023)
.....+.+.++++.||+++..+..+|.|.+-.+.. ..... ...... .++++|+|+++|+++++.-+...+
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~------~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-- 212 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLA------SRTYRLTDAALVDIGATSSTLNLLHPGRMLF-- 212 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCc------cccccCceEEEEEECCCcEEEEEEECCeEEE--
Confidence 34556788999999999999999999998665531 00000 001233 499999999999999996433222
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecH
Q psy6736 205 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 284 (1023)
Q Consensus 205 ~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr 284 (1023)
.....+||.++++.+.+.+.-. ...||+.|..-+....
T Consensus 213 ---~r~i~~G~~~i~~~i~~~~~~~-------------------~~~Ae~~k~~~~~~~~-------------------- 250 (348)
T TIGR01175 213 ---TREVPFGTRQLTSELSRAYGLN-------------------PEEAGEAKQQGGLPLL-------------------- 250 (348)
T ss_pred ---EEEeechHHHHHHHHHHHcCCC-------------------HHHHHHHHhcCCCCCc--------------------
Confidence 3346799999999987543221 1367777765322110
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHc--CCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCcc
Q psy6736 285 ARFEELNADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 343 (1023)
Q Consensus 285 ~~~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~ 343 (1023)
.-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.| +.+
T Consensus 251 -~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~ 309 (348)
T TIGR01175 251 -YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLP 309 (348)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCC
Confidence 012345566666666677766532 222345899999999999999999999999 443
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=116.30 Aligned_cols=226 Identities=20% Similarity=0.226 Sum_probs=132.5
Q ss_pred CCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEE
Q psy6736 115 DGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193 (1023)
Q Consensus 115 ~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 193 (1023)
-..++++.|..++..+|+.+.+.+ +..|+.-+.++++|.+|+++++.. +-+|+|+|.+.|.++
T Consensus 94 ~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~----------------tglVVD~G~~~t~v~ 157 (393)
T PF00022_consen 94 DHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT----------------TGLVVDIGYSSTSVV 157 (393)
T ss_dssp GSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS----------------SEEEEEESSS-EEEE
T ss_pred cceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc----------------cccccccceeeeeee
Confidence 456899999999999998776554 577999999999999999888643 349999999999887
Q ss_pred EEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHh---hhccC---cc-ccHHHHHHHHHHHHHHhHHc-------
Q psy6736 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKR---KYKKD---LT-TNKRALRRLRTACERAKRTL------- 259 (1023)
Q Consensus 194 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~---~~~~~---~~-~~~~~~~~L~~~ae~~K~~L------- 259 (1023)
.+- ++.. +........+||.++++.|.+.|..+--. .+... .. ...-....-...++.+|+.+
T Consensus 158 pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~ 234 (393)
T PF00022_consen 158 PVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDP 234 (393)
T ss_dssp EEE--TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSH
T ss_pred eee--eccc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccc
Confidence 763 3322 11111225799999999998888874110 00000 00 00000001111222333222
Q ss_pred --------CCCCceEEEEecccCCceeEEEecHHHHH---HHhHHHH------------HHHHHHHHHHHHHcCCCc--c
Q psy6736 260 --------SSSTQASIEIDSLFEGVDFYTSITRARFE---ELNADLF------------RGTMEPVEKSLRDAKMDK--A 314 (1023)
Q Consensus 260 --------s~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~~------------~~i~~~i~~~l~~~~~~~--~ 314 (1023)
.........+ .++. .+.+..+.|. -++.|.. ..+.+.|.+++..+.... .
T Consensus 235 ~~~~~~~~~~~~~~~~~l---Pdg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~ 309 (393)
T PF00022_consen 235 DEEQEEQASENPEKSYEL---PDGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKE 309 (393)
T ss_dssp HHHHHHHHCSTTTEEEE----TTSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHH
T ss_pred ccccccccccccceeccc---cccc--ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccc
Confidence 1122223322 2343 4555554442 2333322 156778888887765432 1
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCC-------ccccccC-CCchhHHhHHHHHHHH
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSI-NPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~-~pd~aVa~GAa~~a~~ 364 (1023)
=...|+|+||+|++|.+.++|.+.+.. .++.... +|..++=.||+++|..
T Consensus 310 l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 310 LLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred cccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 236799999999999999999877622 2334444 7899999999998853
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=111.21 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEec
Q psy6736 129 SSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 208 (1023)
Q Consensus 129 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~ 208 (1023)
..-+...++++.|||++..+=-+|.|.+-.|.......+ .......++++|+|+.++.++++.-+...+ .
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~-----~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~ 205 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLP-----DEEDAETVALVDIGASSTTVIIFQNGKPIF-----S 205 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST---------T-EEEEEEE-SS-EEEEEEETTEEEE-----E
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCC-----cccccceEEEEEecCCeEEEEEEECCEEEE-----E
Confidence 344678899999999998776666665444433211000 001346799999999999999986432222 3
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHH
Q psy6736 209 GDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE 288 (1023)
Q Consensus 209 ~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e 288 (1023)
+...+||.++++.|++.+.-.+. +||..|..-+... +...
T Consensus 206 R~i~~G~~~l~~~i~~~~~i~~~-------------------~Ae~~k~~~~l~~---------------------~~~~ 245 (340)
T PF11104_consen 206 RSIPIGGNDLTEAIARELGIDFE-------------------EAEELKRSGGLPE---------------------EYDQ 245 (340)
T ss_dssp EEES-SHHHHHHHHHHHTT--HH-------------------HHHHHHHHT---------------------------HH
T ss_pred EEEeeCHHHHHHHHHHhcCCCHH-------------------HHHHHHhcCCCCc---------------------chHH
Confidence 34679999999999977654443 5666666521100 2334
Q ss_pred HHhHHHHHHHHHHHHHHHH--HcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCcccc---------ccC---------
Q psy6736 289 ELNADLFRGTMEPVEKSLR--DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN---------KSI--------- 348 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~--~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~---------~~~--------- 348 (1023)
+.+.+.++++..-|.+.++ ........|+.|+|+||++++|.+.+.|++.+ +.++. ...
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~ 324 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQE 324 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhh
Confidence 5566666777777777766 22334557999999999999999999999998 44321 111
Q ss_pred -CCchhHHhHHHHHH
Q psy6736 349 -NPDEAVAYGAAVQA 362 (1023)
Q Consensus 349 -~pd~aVa~GAa~~a 362 (1023)
.|..++|.|.|+..
T Consensus 325 ~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 325 DAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcC
Confidence 25678999998864
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=106.18 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=98.8
Q ss_pred ceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHH
Q psy6736 144 NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223 (1023)
Q Consensus 144 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 223 (1023)
..+.+++|+.||.+.+..... +...++|+|+||+|+|++++.- +.-.+....+...+|-..+-..+.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-----------~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-----------EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------------TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHH
T ss_pred eeEEEEcccHHHHHHHHHhhc-----------ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHH
Confidence 467899999999988765522 3467999999999999998862 211222334456789998888888
Q ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHH
Q psy6736 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVE 303 (1023)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 303 (1023)
+.+.. .. ... +......+..... -+..++. ..... =..+++.++++..++++.+.|.
T Consensus 208 ~~l~~-~~----~~~--s~~~~~~ii~~~~-~~~~~~~----------~i~~~-----~~~~~v~~~i~~~~~~l~~~i~ 264 (318)
T PF06406_consen 208 QALRS-AG----IDT--SELQIDDIIRNRK-DKGYLRQ----------VINDE-----DVIDDVSEVIEEAVEELINRIL 264 (318)
T ss_dssp HHTT---S----BHH--HHHHHHHHHHTTT--HHHHHH----------HSSSH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hc----CCC--cHHHHHHHHHhhh-ccceecc----------cccch-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 77665 11 000 0001111111000 0000000 00000 0123444555555555555555
Q ss_pred HHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcC--CccccccCCCchhHHhHHH
Q psy6736 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAA 359 (1023)
Q Consensus 304 ~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~~pd~aVa~GAa 359 (1023)
+.+. ...+++.|+||||++. .+.+.|++.|+ ...+...-||..|-|+|-+
T Consensus 265 ~~~~----~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 265 RELG----DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHT----TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHh----hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5543 2356799999999986 77899999985 3467778899999999964
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=105.47 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=107.9
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
++.+++|+|+|+||+|++++. ++.+.. ..++....|..++.+.|.+++.++. ++..+. .. ++....+
T Consensus 183 ~~~~ilvIDIG~~TtD~~v~~--~~~~~~-~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~~---~ie~~l~-- 249 (344)
T PRK13917 183 EEGKVSVIDFGSGTTDLDTIQ--NLKRVE-EESFVIPKGTIDVYKRIASHISKKE---EGASIT--PY---MLEKGLE-- 249 (344)
T ss_pred ccCcEEEEEcCCCcEEEEEEe--CcEEcc-cccccccchHHHHHHHHHHHHHhhC---CCCCCC--HH---HHHHHHH--
Confidence 446799999999999999986 444433 3334467899999999988875432 222221 11 1212211
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
.. .+.+ ..+.. +.+ ++++.++++.+++++.+.+...+.. ..+++.|+|+||++++ +++.|
T Consensus 250 -----~g---~i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~l 309 (344)
T PRK13917 250 -----YG---ACKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSL 309 (344)
T ss_pred -----cC---cEEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHH
Confidence 11 1111 11111 222 4667889999999999988888753 3578999999999987 88999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++.|+.. ....||..|-|+|...+|..+.+
T Consensus 310 k~~f~~~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 310 SHWYSDV--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHcCCe--EEcCChHHHHHHHHHHHHHHHhc
Confidence 9999643 56689999999999999986643
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-07 Score=103.97 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=136.1
Q ss_pred CCcceEecCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEE
Q psy6736 115 DGQNEGLIPAYFNISSVKSTKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193 (1023)
Q Consensus 115 ~~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 193 (1023)
-..+++|-|..+...+|+.|.+ ..+..++.-+.+...|.+++++++. .+-+|+|+|.+.|.++
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------------~tglVVDiG~~~t~v~ 164 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------------TTGIVMDSGDGVSHTV 164 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------------ceEEEEECCCceEEEE
Confidence 3568899999999999988876 5577799999999999999887642 2469999999999987
Q ss_pred EEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCc---------
Q psy6736 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ--------- 264 (1023)
Q Consensus 194 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~--------- 264 (1023)
-+.-+-. +........+||.++++.|.+.|...- ..... . .- ...++.+|+.+..-..
T Consensus 165 PV~dG~~---~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (376)
T PTZ00281 165 PIYEGYA---LPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTA 231 (376)
T ss_pred EEEeccc---chhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhh
Confidence 6543221 111222357999999999988775421 11110 0 00 1234555555432110
Q ss_pred ---eEEEEe-cccCCceeEEEecHHHH---HHHhHHHH-----HHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHH
Q psy6736 265 ---ASIEID-SLFEGVDFYTSITRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPK 330 (1023)
Q Consensus 265 ---~~i~i~-~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~ 330 (1023)
...... .+.+|. .+++..+.| |-+++|.+ ..+.+.|.+++..+... +.=.+.|+|+||+|.+|.
T Consensus 232 ~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~G 309 (376)
T PTZ00281 232 ASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPG 309 (376)
T ss_pred hcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcC
Confidence 001111 122333 345555444 23444432 24566777777765432 122367999999999999
Q ss_pred HHHHHHHHc----CC---ccccccCCCchhHHhHHHHHHH
Q psy6736 331 VQKLLQDFF----NG---KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 331 v~~~l~~~f----~~---~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
+.++|+..+ +. .++..+.++..++=.||+++|.
T Consensus 310 f~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 310 IADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 999988765 21 1234445667888889988875
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.9e-07 Score=101.98 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=135.5
Q ss_pred CCcceEecCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEE
Q psy6736 115 DGQNEGLIPAYFNISSVKSTKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193 (1023)
Q Consensus 115 ~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 193 (1023)
-..+++|-|..++..+|+.+.+. .+..|+..+.++.+|.+|+++++. .+-+|+|+|.+.|+++
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------------~tglVVDiG~~~t~v~ 164 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------------TTGIVLDSGDGVSHTV 164 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------------ceEEEEECCCCcEEEE
Confidence 45688999999999999876555 467799999999999999887642 2459999999999987
Q ss_pred EEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC----------
Q psy6736 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST---------- 263 (1023)
Q Consensus 194 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~---------- 263 (1023)
.+.- |..-..+ .....+||.++++.|.+.+.... ..+... .. ...++.+|+.+..-.
T Consensus 165 pV~d--G~~l~~~-~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~--~~---~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (378)
T PTZ00004 165 PIYE--GYSLPHA-IHRLDVAGRDLTEYMMKILHERG-----TTFTTT--AE---KEIVRDIKEKLCYIALDFDEEMGNS 231 (378)
T ss_pred EEEC--CEEeecc-eeeecccHHHHHHHHHHHHHhcC-----CCCCcH--HH---HHHHHHHhhcceeecCCHHHHHhhh
Confidence 7652 3222112 22357999999999999875431 111111 00 112344444432110
Q ss_pred ----c-eEEEEecccCCceeEEEecHHHHH---HHhHHH------HHHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCC
Q psy6736 264 ----Q-ASIEIDSLFEGVDFYTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTR 327 (1023)
Q Consensus 264 ----~-~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr 327 (1023)
. ..... .+.+|. .+.+..+.|. -++.|- ...+.+.|.+++.++... +.=...|+|+||+|.
T Consensus 232 ~~~~~~~~~~y-~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~ 308 (378)
T PTZ00004 232 AGSSDKYEESY-ELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTM 308 (378)
T ss_pred hcCccccceEE-ECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhc
Confidence 0 01111 122343 2445555542 345553 235567777777766432 222367999999999
Q ss_pred cHHHHHHHHHHc----CC---ccccccCCCchhHHhHHHHHHH
Q psy6736 328 IPKVQKLLQDFF----NG---KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 328 ~p~v~~~l~~~f----~~---~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
+|.+.++|+..+ +. .++..+.++..++=.||+++|.
T Consensus 309 ~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 309 YRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred CcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 999999988765 21 1233445677777888888774
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=97.01 Aligned_cols=217 Identities=17% Similarity=0.160 Sum_probs=134.4
Q ss_pred CCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEE
Q psy6736 115 DGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193 (1023)
Q Consensus 115 ~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 193 (1023)
-..+++|-|..++..+|+.|.+.+ +..+...+.+.+.|.+++++++. .+-+|+|+|.|.++++
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------------~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------------TIGLVVDSGEGVTHCV 163 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------------ceeeeecCCCCcceEE
Confidence 457899999999999998886654 56688899999999999887643 2459999999999987
Q ss_pred EEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC----------
Q psy6736 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST---------- 263 (1023)
Q Consensus 194 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~---------- 263 (1023)
-+. +|..--.+. ....+||.++++.|.+.|... +....... . ...++.+|+.+..-.
T Consensus 164 PV~--dG~~l~~~~-~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~ 230 (375)
T PTZ00452 164 PVF--EGHQIPQAI-TKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIY 230 (375)
T ss_pred EEE--CCEEeccce-EEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHh
Confidence 765 332211121 225699999999998877532 11111110 0 112344444433211
Q ss_pred ----ceEEEEecccCCceeEEEecHHHH---HHHhHHHH-----HHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcH
Q psy6736 264 ----QASIEIDSLFEGVDFYTSITRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIP 329 (1023)
Q Consensus 264 ----~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p 329 (1023)
...... .+.+|. .+.+..+.| |-+++|.+ ..+.+.|.+.+..+... ..=...|+|+||+|.+|
T Consensus 231 ~~~~~~~~~y-~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~ 307 (375)
T PTZ00452 231 KESNSQDSPY-KLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFP 307 (375)
T ss_pred hccCCcCceE-ECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEeccccccc
Confidence 000011 122333 345666655 23444432 24566777777766432 22246799999999999
Q ss_pred HHHHHHHHHc----CC-c--cccccCCCchhHHhHHHHHHH
Q psy6736 330 KVQKLLQDFF----NG-K--ELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 330 ~v~~~l~~~f----~~-~--~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
.+.++|++.+ +. . ++..+.++..++=.|++++|.
T Consensus 308 Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 308 GIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9999988765 21 1 233344556677788888875
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=96.59 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=146.2
Q ss_pred cccccCHHHHHhHhhhhccCcchHHHHHHHHHhCC--cCCcceEecCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHH
Q psy6736 79 RLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRK--VDGQNEGLIPAYFNISSVKSTKDS-GTIAGLNVLRIINEPTAA 155 (1023)
Q Consensus 79 ~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~--~~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AA 155 (1023)
..+.+..-+....++ +++.+ .++. .-..+++|-|+.++..+|+.|.+. .+..|+.-+.+.++|.+|
T Consensus 79 ~~G~v~dwd~~e~iw-------~~~f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~ls 147 (380)
T PTZ00466 79 NHGIIENWNDMENIW-------IHVYN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILS 147 (380)
T ss_pred cCCeECCHHHHHHHH-------HHHHh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHH
Confidence 334455555555555 55543 2332 235688999999999999987554 466789999999999999
Q ss_pred HHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhc
Q psy6736 156 AIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235 (1023)
Q Consensus 156 al~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~ 235 (1023)
+++++. .+-+|+|+|.+.|.++-+. ++..-. .......+||.++++.|.+.+.+. +
T Consensus 148 l~a~g~----------------~tglVVD~G~~~t~v~PV~--~G~~~~-~~~~~~~~GG~~lt~~L~~lL~~~-----~ 203 (380)
T PTZ00466 148 LYSCGK----------------TNGTVLDCGDGVCHCVSIY--EGYSIT-NTITRTDVAGRDITTYLGYLLRKN-----G 203 (380)
T ss_pred HHhcCC----------------ceEEEEeCCCCceEEEEEE--CCEEee-cceeEecCchhHHHHHHHHHHHhc-----C
Confidence 987643 2469999999999987654 332211 122225799999999998877531 1
Q ss_pred cCccccHHHHHHHHHHHHHHhHHcCCC-------------CceEEEEecccCCceeEEEecHHHH---HHHhHHHH----
Q psy6736 236 KDLTTNKRALRRLRTACERAKRTLSSS-------------TQASIEIDSLFEGVDFYTSITRARF---EELNADLF---- 295 (1023)
Q Consensus 236 ~~~~~~~~~~~~L~~~ae~~K~~Ls~~-------------~~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~---- 295 (1023)
..... . .-+..++.+|+.+..- .......+ +.+|. .+.+..+.| |-++.|-+
T Consensus 204 ~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~-LPdg~--~i~l~~er~~~~E~LF~P~~~g~~ 275 (380)
T PTZ00466 204 HLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYI-LPDGS--QILIGSERYRAPEVLFNPSILGLE 275 (380)
T ss_pred CCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEE-CCCCc--EEEEchHHhcCcccccCccccCCC
Confidence 11110 0 1112344455543211 00001111 22333 345565555 23444422
Q ss_pred -HHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHHHHHHHHHHcCC-----c--cccccCCCchhHHhHHHHHHH
Q psy6736 296 -RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-----K--ELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 296 -~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-----~--~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
..+.+.|.+.+.++... +.=...|+|+||+|.+|.+.++|+..+.. . .+..+.++..++=+||+++|.
T Consensus 276 ~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 276 YLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 24566777777766433 22246799999999999999999877621 1 233344666777889888875
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-06 Score=89.61 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=103.4
Q ss_pred eeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHH
Q psy6736 147 RIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 226 (1023)
Q Consensus 147 ~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 226 (1023)
..++|.+|-+.....-.. ..=.|+|+||..+-+..++ ++.+.-.........|+..|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~-------------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP-------------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CceEEhhHHHHHHHHHCC-------------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc
Confidence 367788876554322211 1225999999988887776 4544433445556778888888887664
Q ss_pred HHHHHhhhccCccccHHHHHHHHHHHHHHhHHc----CCCCceEEEEec-ccCCceeEEEecHHHHHHHhHHHHHHHHHH
Q psy6736 227 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTL----SSSTQASIEIDS-LFEGVDFYTSITRARFEELNADLFRGTMEP 301 (1023)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~L----s~~~~~~i~i~~-~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 301 (1023)
--.+. +++..+..- .-+....+..+. +.... .-..++ ++++..+++.+...
T Consensus 138 ~~~~~-------------------e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~~va~~ 193 (248)
T TIGR00241 138 GVSVE-------------------ELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYESIAER 193 (248)
T ss_pred CCCHH-------------------HHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHHHHHHH
Confidence 42222 222222221 111112222211 00000 001122 45666666666666
Q ss_pred HHHHHHHcCCCccCcC-eEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 302 VEKSLRDAKMDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 302 i~~~l~~~~~~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
+.+.+...+ ++ .|+|+||.+++|++.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 194 i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 194 VAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 666665433 44 7999999999999999999999 788888889999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-05 Score=81.81 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccc-cccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLD-KKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 210 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~-~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~ 210 (1023)
....+|+++|||+...+=-|.-|.--+|..- .... ......+++|+|+|+..+.+.++.-+...+ ..+
T Consensus 152 ~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~------~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~ 220 (354)
T COG4972 152 ESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG------PEEAAMKVAVFDIGATSSELLVIQDGKILY-----TRE 220 (354)
T ss_pred HHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhC------CchhhhhheeeeecccceEEEEEECCeeee-----Eee
Confidence 4467889999998877777777775555411 1111 001233479999999999999987654444 455
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHH
Q psy6736 211 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 290 (1023)
Q Consensus 211 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~ 290 (1023)
..+||+.++.++...+--.+. .++.+|....-.. +--.++
T Consensus 221 ~~~g~~Qlt~~i~r~~~L~~~-------------------~a~~~k~~~~~P~---------------------~y~~~v 260 (354)
T COG4972 221 VPVGTDQLTQEIQRAYSLTEE-------------------KAEEIKRGGTLPT---------------------DYGSEV 260 (354)
T ss_pred ccCcHHHHHHHHHHHhCCChh-------------------HhHHHHhCCCCCC---------------------chhHHH
Confidence 789999999988755432222 4566665543221 122345
Q ss_pred hHHHHHHHHHHHHHHHHHc--CCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCch
Q psy6736 291 NADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 352 (1023)
Q Consensus 291 ~~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~ 352 (1023)
..+++..+.+.|.+.|+-. .-...+|+.|+|.||++++-.+.+++.+.+ +.+.. ..||..
T Consensus 261 l~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl-~~~t~-vanPf~ 322 (354)
T COG4972 261 LRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL-SIPTE-VANPFA 322 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh-CCCeE-eeCHHH
Confidence 6677777777777776632 234567999999999999999999999998 44332 235543
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.7e-05 Score=91.31 Aligned_cols=272 Identities=15% Similarity=0.154 Sum_probs=154.3
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhC--------------CcCCcceEecCCCCCHHHHHHHHHHHHHc-----
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILR--------------KVDGQNEGLIPAYFNISSVKSTKDSGTIA----- 141 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~--------------~~~~~~vitVPa~~~~~qr~~l~~Aa~~A----- 141 (1023)
..|+..-+..++| ..+.-+|-.+.+ ...+.+++|||.-....+|+.+++.++.|
T Consensus 415 p~ySRSSLMtfML-------~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvW 487 (1002)
T PF07520_consen 415 PHYSRSSLMTFML-------SEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVW 487 (1002)
T ss_pred ccccHHHHHHHHH-------HHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4467777877777 777777755432 23457999999999999999988888776
Q ss_pred ---CCc---------------------eeeeecchHHHHHHhccc------------------cccCccccccCCCCCcE
Q psy6736 142 ---GLN---------------------VLRIINEPTAAAIAYGLD------------------KKVGSTAVEYNGSGERN 179 (1023)
Q Consensus 142 ---Gl~---------------------~~~li~Ep~AAal~y~~~------------------~~~~~~~~~~~~~~~~~ 179 (1023)
|.. +.-=.+|.+|.-+-|.+. +............+.-+
T Consensus 488 k~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slr 567 (1002)
T PF07520_consen 488 KALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLR 567 (1002)
T ss_pred HHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceE
Confidence 421 112246666654433211 11000000011223557
Q ss_pred EEEEEeCCceEEEEEEEEe----CC-EEEE----EEecCCCCccHHHHHHHHHH-HHHHHHHhh----------------
Q psy6736 180 VLIFDLGGGTFDVSILTIE----DG-IFEV----KSTAGDTHLGGEDFDNRMVN-HFVQEFKRK---------------- 233 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~----~~-~~~v----~~~~~~~~lGG~~~D~~l~~-~l~~~~~~~---------------- 233 (1023)
+.-+|+||||||+.|-.+. .+ ...+ +...| -.+.|+||=..+++ +++..+.+.
T Consensus 568 iASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 568 IASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred EEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 8999999999999998775 22 2221 12223 45788888766654 444333321
Q ss_pred hccCccccH-H-------------HHHHHHHHHHHHhHHcCCCCceEEEEecc---------------------------
Q psy6736 234 YKKDLTTNK-R-------------ALRRLRTACERAKRTLSSSTQASIEIDSL--------------------------- 272 (1023)
Q Consensus 234 ~~~~~~~~~-~-------------~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~--------------------------- 272 (1023)
+|.+-.... + ...+++.++|+.-..- ........+..+
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 222211000 0 0112333444422100 000000100000
Q ss_pred cCCceeEEEecHHHHHHHhH---HHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCc-------
Q psy6736 273 FEGVDFYTSITRARFEELNA---DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK------- 342 (1023)
Q Consensus 273 ~~~~~~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~------- 342 (1023)
.+-.+..+.|+..++...+- -.+..++..+-+++.. .+.|.++|+|--||+|.||..+++..+-.
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 11124467888888887664 4455555555555544 34689999999999999999999987311
Q ss_pred ------------cccccCCCchhHHhHHHHHHHHHh
Q psy6736 343 ------------ELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 343 ------------~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
.-..--||...||.||.+++....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 111233899999999998775443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-06 Score=92.91 Aligned_cols=140 Identities=21% Similarity=0.327 Sum_probs=86.1
Q ss_pred cceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHh
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 713 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 713 (1023)
...++++|+|+.++.++++. ++.+...-+ ..+||.+++++|++.+--.+ ..||..|
T Consensus 179 ~~~~~lvdiG~~~t~~~i~~--~g~~~f~R~---i~~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k 234 (340)
T PF11104_consen 179 AETVALVDIGASSTTVIIFQ--NGKPIFSRS---IPIGGNDLTEAIARELGIDF-------------------EEAEELK 234 (340)
T ss_dssp T-EEEEEEE-SS-EEEEEEE--TTEEEEEEE---ES-SHHHHHHHHHHHTT--H-------------------HHHHHHH
T ss_pred cceEEEEEecCCeEEEEEEE--CCEEEEEEE---EeeCHHHHHHHHHHhcCCCH-------------------HHHHHHH
Confidence 45799999999999999977 666554433 46999999999986542221 2445555
Q ss_pred hhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCccccceEEEecCccCcHHHHHH
Q psy6736 714 RTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 714 ~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
..-+-.. +...+.+.+.++++..-|.+.++- +......|+.|+|+||++++|.+.+.
T Consensus 235 ~~~~l~~---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~ 293 (340)
T PF11104_consen 235 RSGGLPE---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEY 293 (340)
T ss_dssp HHT---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHH
T ss_pred hcCCCCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHH
Confidence 4311000 223455666677777777777662 23345679999999999999999999
Q ss_pred HHHhhcCccc---------CCCC----------CCccceecchHHHH
Q psy6736 792 LQDFFNGKEL---------NKSI----------NPDEAVAYGAAVQA 819 (1023)
Q Consensus 792 l~~~f~~~~~---------~~~~----------~p~~aVa~GAa~~a 819 (1023)
|++.++ .++ .... .|+.+||.|.|+..
T Consensus 294 l~~~l~-~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 294 LSEELG-IPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHT-SEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHC-CceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 999983 221 1111 35678888888764
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=97.60 Aligned_cols=168 Identities=23% Similarity=0.275 Sum_probs=106.4
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-+|+|+|+++++++.+. +|..-- .......+||+++|+.|.+++..... ..+... -...++.+|+
T Consensus 143 ~~~lVVDiG~~~t~i~pv~--~G~~~~-~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~~-------~~~~~~~iKe 209 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVY--DGYVLP-HAIKRLDLAGRDLTRYLKELLRERGY---ELNSSD-------EREIVRDIKE 209 (371)
T ss_pred CeEEEEECCCCeeEEEEEE--CCEEch-hhheeccccHHHHHHHHHHHHHhcCC---Cccchh-------HHHHHHHHHH
Confidence 6799999999999998876 554322 22234679999999999998765421 001111 1223455555
Q ss_pred hcCCCc-----------------eeEEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC
Q psy6736 715 TLSSST-----------------QASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKM 768 (1023)
Q Consensus 715 ~Ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~---------~~~~~i~~~l~~~~~ 768 (1023)
.+..-. ..... +.++ ..+.++.+.| .+.+.+|+ .+.+.|.++|.....
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~---lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~ 283 (371)
T cd00012 210 KLCYVALDIEEEQDKSAKETSLLEKTYE---LPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDI 283 (371)
T ss_pred hheeecCCHHHHHHhhhccCCccceeEE---CCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCH
Confidence 542210 00111 1122 2455665544 33444444 677888888876543
Q ss_pred C--ccccceEEEecCccCcHHHHHHHHHhhcC---------cccCCCCCCccceecchHHHHHH
Q psy6736 769 D--KAQIHDIVLVGGSTRIPKVQKLLQDFFNG---------KELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 769 ~--~~~i~~V~LvGG~srip~v~~~l~~~f~~---------~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+ ..-.+.|+|+||+|++|.+.+.|.+.+.. ..+....+|..++-+||+++|..
T Consensus 284 ~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 284 DLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred hHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 2 23467899999999999999999987742 12335568899999999999954
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=91.10 Aligned_cols=117 Identities=12% Similarity=0.235 Sum_probs=79.7
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhh
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 715 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 715 (1023)
+++++|+|++++++++++ ++.+....+ ..+||.++++.|.+.+ +.+ ...||+.|..
T Consensus 189 ~~~lvdiG~~~t~l~i~~--~g~~~~~r~---i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~ 244 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLH--PGRMLFTRE---VPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQ 244 (348)
T ss_pred eEEEEEECCCcEEEEEEE--CCeEEEEEE---eechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhc
Confidence 499999999999999986 665544433 5699999999887432 211 2456777764
Q ss_pred cCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccceEEEecCccCcHHHHHHHH
Q psy6736 716 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQ 793 (1023)
Q Consensus 716 Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~srip~v~~~l~ 793 (1023)
-..... . -.+++++.++++..-|.+.|+.. ......++.|+|+||++++|.+.+.++
T Consensus 245 ~~~~~~-------------~--------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~ 303 (348)
T TIGR01175 245 GGLPLL-------------Y--------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIY 303 (348)
T ss_pred CCCCCc-------------h--------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHH
Confidence 321110 0 02345566666666666666532 222345899999999999999999999
Q ss_pred Hhhc
Q psy6736 794 DFFN 797 (1023)
Q Consensus 794 ~~f~ 797 (1023)
+.|+
T Consensus 304 ~~l~ 307 (348)
T TIGR01175 304 QRLG 307 (348)
T ss_pred HHHC
Confidence 9994
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00024 Score=76.70 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=85.5
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHH-HHHHHcCCceeeeecchHHHHHHh
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTK-DSGTIAGLNVLRIINEPTAAAIAY 159 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~-~Aa~~AGl~~~~li~Ep~AAal~y 159 (1023)
+-+..=++..+++ +|..+.-- +....---++||-|++=+..+|+.+. -+.+...+....|..+|+++|++-
T Consensus 80 Glv~dWD~~~~~w-------~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~ 151 (426)
T KOG0679|consen 80 GLVEDWDLFEMQW-------RYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN 151 (426)
T ss_pred CCcccHHHHHHHH-------HHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc
Confidence 4455556666666 66553211 12222346899999888888887654 455777889999999999999876
Q ss_pred ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy6736 160 GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 229 (1023)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 229 (1023)
| ..+.||+|+|++++.++-+. +|.+--.+... ..+||+.++..+.+.|..+
T Consensus 152 G----------------rstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 152 G----------------RSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred C----------------CCceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4 23579999999999988765 33333333333 6899999999999988754
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-05 Score=86.69 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=91.0
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
++.+++|+|+||+|+|+.++. +..+ +...++....|-.++-+.|.+.+.+++. .+...+...+.. +.+.=
T Consensus 165 ~~~~~lVIDIG~~TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~~i~~---~l~~g 234 (320)
T TIGR03739 165 GKEQSLIIDPGYFTFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDIDRIDL---ALRTG 234 (320)
T ss_pred CcCcEEEEecCCCeeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHHHHHH---HHHhC
Confidence 556799999999999998764 4444 4455555678988888888877766653 221011111111 11111
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|. +.+ .+. .+.|+ +.++ .....+++++..+.+.+. ...+++.|+|+||++. .+++.|
T Consensus 235 ~~---------~~~----~gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l 291 (320)
T TIGR03739 235 KQ---------PRI----YQK--PVDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAV 291 (320)
T ss_pred Cc---------eee----cce--ecCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHH
Confidence 10 000 111 11222 1122 333334444333333331 1245889999999987 668999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHH
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
++.|+...+....||..|.|+|-..++
T Consensus 292 ~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 292 KAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 999977655567899999999977665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=75.75 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=98.6
Q ss_pred HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHH
Q psy6736 139 TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 218 (1023)
Q Consensus 139 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 218 (1023)
+..|.++.--=-|+.+|.+....... .+..+.|+|+||||||.|++.-.+.+. ..--+| .|+.+
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----------t~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlAG----AG~mV 169 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----------TDKPLAILDMGGGSTDASIINRDGEVT-AIHLAG----AGNMV 169 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT-------------SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----------CCCCeEEEecCCCcccHHHhCCCCcEE-EEEecC----Cchhh
Confidence 45688887778899999887655443 456689999999999999998754433 222122 46666
Q ss_pred HHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEE----------EecccC----------Ccee
Q psy6736 219 DNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE----------IDSLFE----------GVDF 278 (1023)
Q Consensus 219 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~----------i~~~~~----------~~~~ 278 (1023)
+..|...| +.+ . +.-||.+|+---..-+..+. ++...+ ..+.
T Consensus 170 TmlI~sEL--------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~ 231 (332)
T PF08841_consen 170 TMLINSEL--------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDG 231 (332)
T ss_dssp HHHHHHHC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTE
T ss_pred HHHHHHhh--------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCc
Confidence 66654322 111 1 11466777642111110000 000000 0011
Q ss_pred EEEe----cHHHHHHHhHHHHHHH-HHHHHHHHHHcC--CCccCcCeEEEEcCCCCcHHHHHHHHHHcCC-------ccc
Q psy6736 279 YTSI----TRARFEELNADLFRGT-MEPVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KEL 344 (1023)
Q Consensus 279 ~~~i----tr~~~e~~~~~~~~~i-~~~i~~~l~~~~--~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i 344 (1023)
.+.| +-+++..+=...-++. ..-..++|+... -...+|+.|+|||||+.=.-|-+++.+.+.. -.+
T Consensus 232 lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNI 311 (332)
T PF08841_consen 232 LVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNI 311 (332)
T ss_dssp EEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--G
T ss_pred eeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccc
Confidence 2222 2233322222211111 222334444332 2245889999999999887777888777632 245
Q ss_pred cccCCCchhHHhHHHHHH
Q psy6736 345 NKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 345 ~~~~~pd~aVa~GAa~~a 362 (1023)
.-..-|..|||.|.++.-
T Consensus 312 rG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 312 RGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp GGTSTTSTHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHhh
Confidence 555679999999998743
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=92.00 Aligned_cols=169 Identities=22% Similarity=0.314 Sum_probs=99.3
Q ss_pred cceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHh
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 713 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 713 (1023)
..+-||+|+|+++++++.+. +|..- ........+||+++|+.|.+++...-. .+ ... .-...++.+|
T Consensus 142 ~~~~lVVDiG~~~t~v~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iK 208 (373)
T smart00268 142 RTTGLVIDSGDGVTHVVPVV--DGYVL-PHAIKRIDIAGRDLTDYLKELLSERGY-QF--NSS-------AEFEIVREIK 208 (373)
T ss_pred CCEEEEEecCCCcceEEEEE--CCEEc-hhhheeccCcHHHHHHHHHHHHHhcCC-CC--CcH-------HHHHHHHHhh
Confidence 45799999999999999877 44332 222223579999999999988765110 01 111 1122344455
Q ss_pred hhcCCC-------------------ceeEEEEecccCCcceEEEecHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q psy6736 714 RTLSSS-------------------TQASIEIDSLFEGVDFYTSITRARFEELNADLF---------RGTMEPVEKSLRD 765 (1023)
Q Consensus 714 ~~Ls~~-------------------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~---------~~~~~~i~~~l~~ 765 (1023)
+.+..- ....+. +.++.. +.+..+.| .+.+.+| ..+.+.|.++|..
T Consensus 209 e~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~ 282 (373)
T smart00268 209 EKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQK 282 (373)
T ss_pred hheeeecCChHHHHHHhhhcccccccceeEE---CCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHh
Confidence 443211 001111 123332 33333332 2333333 3567777777776
Q ss_pred cCCC--ccccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHHH
Q psy6736 766 AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 766 ~~~~--~~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+..+ ..=.+.|+|+||+|++|.+.+.|.+.+.. ..+....++..++=+||+++|..
T Consensus 283 ~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 283 CDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 5322 12246799999999999999999887621 12334456677888999988854
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.6e-05 Score=83.85 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=82.3
Q ss_pred CCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHH
Q psy6736 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACE 710 (1023)
Q Consensus 631 ~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 710 (1023)
+.+...+||+|+||+|+|++++. ++.-.+....+...+|-.++-.++.+.+... . .. .+.....++.....
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-~----~~--~s~~~~~~ii~~~~ 230 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA-G----ID--TSELQIDDIIRNRK 230 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT---S----BH--HHHHHHHHHHHTTT
T ss_pred hcccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh-c----CC--CcHHHHHHHHHhhh
Confidence 44556799999999999999886 3322333445556789988888887766551 1 10 01111111111000
Q ss_pred HHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHH
Q psy6736 711 RAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 790 (1023)
Q Consensus 711 ~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~ 790 (1023)
-+..++. .....+ -.+++.+.++..++++.+.|.+.+.+ ..+++.|+||||++. .+.+
T Consensus 231 -~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA~--ll~~ 288 (318)
T PF06406_consen 231 -DKGYLRQ----------VINDED-----VIDDVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGAI--LLKD 288 (318)
T ss_dssp --HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTHH--HHHH
T ss_pred -ccceecc----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcHH--HHHH
Confidence 0000000 000000 12344444444555555545444432 346789999999975 6788
Q ss_pred HHHHhhc--CcccCCCCCCccceecchH
Q psy6736 791 LLQDFFN--GKELNKSINPDEAVAYGAA 816 (1023)
Q Consensus 791 ~l~~~f~--~~~~~~~~~p~~aVa~GAa 816 (1023)
.|++.|+ ...+...-||+.|-|+|-+
T Consensus 289 ~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 289 AIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 9999885 3466778899999999854
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.8e-05 Score=79.52 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=89.5
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhcC
Q psy6736 638 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 717 (1023)
Q Consensus 638 lV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 717 (1023)
.|+|+||..+-+..+. ++.+.-.........|+..|.+.+++.+- .++ ..+..+ +.+.+....
T Consensus 94 ~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~--------~~~----~e~~~~---~~~~~~~~~ 156 (248)
T TIGR00241 94 GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG--------VSV----EELGSL---AEKADRKAK 156 (248)
T ss_pred EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC--------CCH----HHHHHH---HhcCCCCCC
Confidence 4999999977766665 66554444555566788888877775432 211 111111 111111100
Q ss_pred CCceeEEEEe-cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc-eEEEecCccCcHHHHHHHHHh
Q psy6736 718 SSTQASIEID-SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH-DIVLVGGSTRIPKVQKLLQDF 795 (1023)
Q Consensus 718 ~~~~~~~~i~-~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~-~V~LvGG~srip~v~~~l~~~ 795 (1023)
-+....+-.+ .+.... ....++ ++++..+++.+...+.+.+...+ ++ .|+|.||.++.|.+.+.+++.
T Consensus 157 ~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~ 226 (248)
T TIGR00241 157 ISSMCTVFAESELISLL--AAGVKK---EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKK 226 (248)
T ss_pred cCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHH
Confidence 0111111110 000000 001222 45666666666666666655433 44 799999999999999999999
Q ss_pred hcCcccCCCCCCccceecchHH
Q psy6736 796 FNGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 796 f~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
+ +.++..+.+|..+.|+|||+
T Consensus 227 l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 227 L-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred h-CCcEEcCCCccHHHHHHHHh
Confidence 9 67788888999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=74.80 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=72.2
Q ss_pred CcceEecCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKD-SGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSI 194 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 194 (1023)
..+++|-|..+...+|..+.+ ..+...+..+.+..++.+++++.+.. ..+.+|+|+|.+.|+++-
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~--------------~~~g~ViD~G~~~t~v~P 172 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS--------------DETGLVIDSGDSVTHVIP 172 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC--------------CCceEEEEcCCCceeeEe
Confidence 468999999999999877644 45777888888888888887766532 136799999999999887
Q ss_pred EEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy6736 195 LTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 229 (1023)
Q Consensus 195 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 229 (1023)
+--+-. +.....-..+||++++..|.+.|...
T Consensus 173 V~DG~~---l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 173 VVDGIV---LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred eecccc---ccccceeeecCcHHHHHHHHHHHhhc
Confidence 653221 11112236799999999998888774
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=82.02 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=89.1
Q ss_pred cceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHh
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 713 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 713 (1023)
..+-||+|+|.|+++++-+. +|..--.+. .-..+||.++|+.|.++|.+.. ..+... ..+..++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--~G~~l~~~~-~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--DGYVIGSSI-KHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--CCEEcccce-EEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHH
Confidence 34569999999999998765 443322222 2257999999999999875431 111111 0112355556
Q ss_pred hhcCCCc-----------------eeEEEEecccCCcceEEEecHHHHHH---HHHHHH------HHHHHHHHHHHHHcC
Q psy6736 714 RTLSSST-----------------QASIEIDSLFEGVDFYTSITRARFEE---LNADLF------RGTMEPVEKSLRDAK 767 (1023)
Q Consensus 714 ~~Ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~~~~---~~~~~~------~~~~~~i~~~l~~~~ 767 (1023)
+.++.-. ...+..++...+....+.|..+.|.- ++.|-+ ..+.+.|.+.|.++.
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 6543210 01122222222344567777776653 233311 145567777777654
Q ss_pred CC--ccccceEEEecCccCcHHHHHHHHHhhc
Q psy6736 768 MD--KAQIHDIVLVGGSTRIPKVQKLLQDFFN 797 (1023)
Q Consensus 768 ~~--~~~i~~V~LvGG~srip~v~~~l~~~f~ 797 (1023)
.+ ..=.+.|+|+||+|.+|.+.+.|++.+.
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 32 2234679999999999999999998773
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=84.09 Aligned_cols=177 Identities=20% Similarity=0.354 Sum_probs=100.9
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHH-HHh--hhc-----------cCcchhHHH
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE-FKR--KYK-----------KDLTTNKRA 701 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~-~~~--~~~-----------~~~~~~~~~ 701 (1023)
+-||+|+|.+.+.|+-+. +|.. +........+||.++++.|.+.+.++ +.- .+. .........
T Consensus 143 tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (393)
T PF00022_consen 143 TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEI 219 (393)
T ss_dssp SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHH
T ss_pred cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhcc
Confidence 579999999999887764 5543 11122225689999999999888874 110 000 000111222
Q ss_pred HHHHHHHHHHHhhhc--------CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHH----------------HHHH
Q psy6736 702 LRRLRTACERAKRTL--------SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR----------------GTME 757 (1023)
Q Consensus 702 ~~~L~~~~e~~K~~L--------s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~----------------~~~~ 757 (1023)
...+++.+..+.... +......+.++ ++. .+.+..+.| .+.+.+|+ .+.+
T Consensus 220 ~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~ 293 (393)
T PF00022_consen 220 VEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPE 293 (393)
T ss_dssp HHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHH
T ss_pred chhccchhhhcccccccccccccccccceecccc---ccc--ccccccccc-cccccccccccccccccccccccchhhh
Confidence 222332222111111 11222333332 333 556666655 34455544 4667
Q ss_pred HHHHHHHHcCCCc--cccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCC-CCccceecchHHHHHH
Q psy6736 758 PVEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSI-NPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 758 ~i~~~l~~~~~~~--~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~-~p~~aVa~GAa~~a~~ 821 (1023)
.|.+++..+..+. .-.+.|+|+||+|++|.+.+.|.+.+.. .++.... +|..++=+||+++|..
T Consensus 294 ~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 294 LILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 7888887665332 2247899999999999999999887632 2333444 7889999999999853
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=73.28 Aligned_cols=129 Identities=24% Similarity=0.361 Sum_probs=89.5
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhc
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 716 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 716 (1023)
-.|+|+||||+-+||++ +|. |..+ -|..-||..+...|+- .|++++ ++||..|..-
T Consensus 142 g~VVDiGGGTTGIsi~k--kGk--Viy~-ADEpTGGtHmtLvlAG--------~ygi~~-----------EeAE~~Kr~~ 197 (277)
T COG4820 142 GGVVDIGGGTTGISIVK--KGK--VIYS-ADEPTGGTHMTLVLAG--------NYGISL-----------EEAEQYKRGH 197 (277)
T ss_pred CcEEEeCCCcceeEEEE--cCc--EEEe-ccCCCCceeEEEEEec--------ccCcCH-----------hHHHHhhhcc
Confidence 56899999999999998 443 3322 2466788777655542 223322 3556666542
Q ss_pred CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhh
Q psy6736 717 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 796 (1023)
Q Consensus 717 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 796 (1023)
-... |.-..++|.++++.+.+.+-++..+ +..+.|+||+|.-|.+.+..++.|
T Consensus 198 k~~~----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 198 KKGE----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred ccch----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh
Confidence 1111 1112356888999999998888665 467999999999999999999999
Q ss_pred cCcccCCCCCCccceecchHH
Q psy6736 797 NGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 797 ~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
..++..+..|....-.|-|+
T Consensus 251 -~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 251 -ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred -ccccccCCCcceechhhhhh
Confidence 77888888887776666654
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0043 Score=66.88 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=51.0
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCcccc-ccCCCchhHHhHHHHHHHH
Q psy6736 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 290 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~-~~~~pd~aVa~GAa~~a~~ 364 (1023)
++..+...+...+...++..++. +.|+|+||.++.|.+++.+++.+ +.++. .+.+|..+-|.|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444444433322 45999999999999999999999 56665 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00074 Score=77.45 Aligned_cols=167 Identities=21% Similarity=0.307 Sum_probs=96.7
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-||+|+|.+.+.++-+. +|.. +........+||.++++.|.+.|...- +......+ +..++.+|+
T Consensus 149 ~tglVVDiG~~~t~v~PV~--dG~~-~~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~~~-------~~~~~~iKe 215 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDYMMKILTERG---YSFTTTAE-------REIVRDIKE 215 (376)
T ss_pred ceEEEEECCCceEEEEEEE--eccc-chhheeeccCcHHHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHH
Confidence 4689999999999887544 3322 222222357999999999988775431 11101111 122444555
Q ss_pred hcCCCc----------------eeEEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC
Q psy6736 715 TLSSST----------------QASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKMD 769 (1023)
Q Consensus 715 ~Ls~~~----------------~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~---------~~~~~i~~~l~~~~~~ 769 (1023)
.++.-. ..... +.+|. .+.+..+.| ...+.+|+ .+.+.|.+++..+..+
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~y~---LPdg~--~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d 289 (376)
T PTZ00281 216 KLAYVALDFEAEMQTAASSSALEKSYE---LPDGQ--VITIGNERF-RCPEALFQPSFLGMESAGIHETTYNSIMKCDVD 289 (376)
T ss_pred hcEEecCCchHHHHhhhcCcccceeEE---CCCCC--EEEeeHHHe-eCcccccChhhcCCCCCCHHHHHHHHHHhCChh
Confidence 542100 01112 22333 345555544 22333443 3556666666655322
Q ss_pred c--cccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHH
Q psy6736 770 K--AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 770 ~--~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
. .=.+.|+|+||+|.+|.+.++|+..+.. .++..+.++..++=+||+++|.
T Consensus 290 ~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 290 IRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 1 2246799999999999999998876621 1234445777899999999985
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00075 Score=77.23 Aligned_cols=167 Identities=17% Similarity=0.253 Sum_probs=96.5
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-||+|+|.|.++++-+. +|..--.+. ....+||.++++.|.+.|.+. .+......... .++.+|+
T Consensus 148 ~tglVVDiG~~~t~v~PV~--dG~~l~~~~-~r~~~gG~~lt~~L~~lL~~~---~~~~~~~~~~~-------~~~~iKe 214 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVF--EGHQIPQAI-TKINLAGRLCTDYLTQILQEL---GYSLTEPHQRI-------IVKNIKE 214 (375)
T ss_pred ceeeeecCCCCcceEEEEE--CCEEeccce-EEeeccchHHHHHHHHHHHhc---CCCCCCHHHHH-------HHHHHHH
Confidence 4679999999999987665 553322222 225699999999988876432 11111001111 1333444
Q ss_pred hcCCC----------------ceeEEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC
Q psy6736 715 TLSSS----------------TQASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKMD 769 (1023)
Q Consensus 715 ~Ls~~----------------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~---------~~~~~i~~~l~~~~~~ 769 (1023)
.++.- ......+ .+|. .+.+..+.| ...+.+|+ .+.+.+.+.+..+...
T Consensus 215 ~~c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d 288 (375)
T PTZ00452 215 RLCYTALDPQDEKRIYKESNSQDSPYKL---PDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLD 288 (375)
T ss_pred HhccccCcHHHHHHHhhccCCcCceEEC---CCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHhCCHh
Confidence 43211 0111222 2333 355666666 33333333 3456666666655322
Q ss_pred --ccccceEEEecCccCcHHHHHHHHHhhcC-----c--ccCCCCCCccceecchHHHHH
Q psy6736 770 --KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-----K--ELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 770 --~~~i~~V~LvGG~srip~v~~~l~~~f~~-----~--~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
..=.+.|+|+||+|.+|.+.++|.+.+.. . ++..+.++..++=+|++++|.
T Consensus 289 ~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 289 LRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 22246899999999999999999876621 1 233344666788899999985
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00025 Score=80.21 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=57.6
Q ss_pred cceEecCCCCCHHHHHHHHHHHHH------------cCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEE
Q psy6736 117 QNEGLIPAYFNISSVKSTKDSGTI------------AGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFD 184 (1023)
Q Consensus 117 ~~vitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D 184 (1023)
-.+||.+...-.. ++++.+. ||+++..++. |.|++.+...+ + ++..++++|
T Consensus 90 ahIITg~~~~~~N----l~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E-----------ke~gVa~ID 152 (475)
T PRK10719 90 AVIITGETARKEN----AREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E-----------RNTRVLNID 152 (475)
T ss_pred EEEEEechhHHHH----HHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h-----------ccCceEEEE
Confidence 3588887665544 5555554 6777766766 99988766533 2 677899999
Q ss_pred eCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHH
Q psy6736 185 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220 (1023)
Q Consensus 185 ~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~ 220 (1023)
+|||||+++++.-+.-. ..+...+||+.++.
T Consensus 153 IGgGTT~iaVf~~G~l~-----~T~~l~vGG~~IT~ 183 (475)
T PRK10719 153 IGGGTANYALFDAGKVI-----DTACLNVGGRLIET 183 (475)
T ss_pred eCCCceEEEEEECCEEE-----EEEEEecccceEEE
Confidence 99999999999753322 23447789988753
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.006 Score=64.87 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCcc----ccccCCCchhHHhHHHHHH
Q psy6736 289 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE----LNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~----i~~~~~pd~aVa~GAa~~a 362 (1023)
+++..+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.|++.+++.+ +..+.+|+.+-|.|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344445555555444444443221 1359999999999999999999885433 5556688899999999874
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=67.74 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=37.3
Q ss_pred cccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHH
Q psy6736 771 AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 771 ~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a 819 (1023)
.+|++|+|||||+.=.-|-+++.+.+.. -.++-..-|..|||.|.++-.
T Consensus 274 R~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 274 RDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp CC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred ccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 5799999999999988888888887732 356667789999999988653
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0063 Score=68.24 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHH
Q psy6736 317 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 317 ~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
+.|+++||.++.+.+.+.+++.+ +.++..+.+|..+-|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 45999999999999999999999 67888899999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=73.87 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=97.5
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-+|+|+|.+.+.|+-+. +|..- ........+||.++++.|.+.+.+. .+..+...+ +..++.+|+
T Consensus 154 ~tglVVD~G~~~t~v~PV~--~G~~~-~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~~~-------~~~v~~iKe 220 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIY--EGYSI-TNTITRTDVAGRDITTYLGYLLRKN---GHLFNTSAE-------MEVVKNMKE 220 (380)
T ss_pred ceEEEEeCCCCceEEEEEE--CCEEe-ecceeEecCchhHHHHHHHHHHHhc---CCCCCcHHH-------HHHHHHHHH
Confidence 4689999999999987655 44332 2222235799999999998876532 111111111 122334444
Q ss_pred hcCC---C----------c--eeEEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCc
Q psy6736 715 TLSS---S----------T--QASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKMDK 770 (1023)
Q Consensus 715 ~Ls~---~----------~--~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~---------~~~~~i~~~l~~~~~~~ 770 (1023)
.++. + . ..... +.+|. .+.|..+.|. ..+.+|+ .+-+.|.+.+.++..+.
T Consensus 221 ~~c~v~~d~~~e~~~~~~~~~~~~y~---LPdg~--~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~ 294 (380)
T PTZ00466 221 NCCYVSFNMNKEKNSSEKALTTLPYI---LPDGS--QILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDL 294 (380)
T ss_pred hCeEecCChHHHHhhccccccceeEE---CCCCc--EEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhh
Confidence 4321 0 0 01122 22333 3556666653 3344443 34566666666654321
Q ss_pred --cccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHH
Q psy6736 771 --AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 771 --~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
.=...|+|+||+|.+|.+.+.|.+.+.. .++..+.++..++=+||+++|.
T Consensus 295 r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 295 RRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 2246799999999999999999887622 1233445667788899999985
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00097 Score=76.60 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-+|+|+|.+.++++-+. +|..--.+. ....+||.++++.|.+.+..+- +....... ...++..|+
T Consensus 149 ~tglVVDiG~~~t~v~pV~--dG~~l~~~~-~~~~~GG~~lt~~L~~lL~~~~---~~~~~~~~-------~~~~~~iKe 215 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIY--EGYSLPHAI-HRLDVAGRDLTEYMMKILHERG---TTFTTTAE-------KEIVRDIKE 215 (378)
T ss_pred ceEEEEECCCCcEEEEEEE--CCEEeecce-eeecccHHHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHhh
Confidence 4679999999999987765 454322222 2357999999999998875431 11111111 112344444
Q ss_pred hcCCC---------------c--eeEEEEecccCCcceEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCC
Q psy6736 715 TLSSS---------------T--QASIEIDSLFEGVDFYTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKM 768 (1023)
Q Consensus 715 ~Ls~~---------------~--~~~~~i~~~~~~~~~~~~itr~~~~---~~~~~~------~~~~~~~i~~~l~~~~~ 768 (1023)
.++.- . ...+. +.+|. .+.+..+.|. -++.|- ...+.+.|.+++.++..
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~ 290 (378)
T PTZ00004 216 KLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI 290 (378)
T ss_pred cceeecCCHHHHHhhhhcCccccceEEE---CCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh
Confidence 43210 0 11122 22333 3455555542 233332 22455666677666543
Q ss_pred C--ccccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHH
Q psy6736 769 D--KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 769 ~--~~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
+ ..=...|+|+||+|.+|.+.++|...+.. .++....++..++=+||+++|.
T Consensus 291 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 291 DIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred hHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 2 12246799999999999999999887621 1233445677888899998885
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.036 Score=64.00 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=40.7
Q ss_pred ccCcCeEEEEcCCCCcHHHHHHHHHHcCCc-------------------cccccCCCchhHHhHHHHHHHHHh
Q psy6736 313 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------------------ELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 313 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~-------------------~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
-.+.|.++|+|--+|+|.|+..++...+-. +..+.-||...+|.||-+++..+.
T Consensus 776 ~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 776 HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 345688999999999999999998876210 112223899999999998876654
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0066 Score=67.17 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcC----CccccccCCCchhHHhHHHHHH
Q psy6736 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN----GKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 290 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~----~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
++..+...+...+...+...+ .--+.|+|+||.++.+.+.+.|++.++ +.++..+.+|..+-|.|||++|
T Consensus 359 IaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 359 ILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 444455555544444444431 112569999999999999999999984 4567788899999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=62.15 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=56.9
Q ss_pred HHHHhHHHHHHHHHHHHH-HHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 287 FEELNADLFRGTMEPVEK-SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 287 ~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
.|+++..+...+.+.+-. +++.-... +-|+|+||.+....+.+++++.+ +.++..+.+|...-|.|||++|...
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 345566666655554444 55443332 22999999999999999999999 7899999999999999999998644
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=71.25 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=60.3
Q ss_pred ceEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCc-----------
Q psy6736 734 DFYTSITRARFEELNA---DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK----------- 799 (1023)
Q Consensus 734 ~~~~~itr~~~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~----------- 799 (1023)
+..+.|+..++...+. -.|..++..+-+++.. -+-|.++|+|--||+|.|+..+++..+-.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4567889988888664 4455555555555443 24588999999999999999999987421
Q ss_pred --------ccCCCCCCccceecchHHHHHHH
Q psy6736 800 --------ELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 800 --------~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+..+--||.+.||.||.+.+...
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 11234599999999998887543
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0097 Score=64.63 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=42.5
Q ss_pred ccceEEEec-CccCcHHHHHHHHHhhc--CcccCCCCCCccceecchHHHHH
Q psy6736 772 QIHDIVLVG-GSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 772 ~i~~V~LvG-G~srip~v~~~l~~~f~--~~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.||..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 79999999999998873 46677888999999999999884
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=68.04 Aligned_cols=157 Identities=21% Similarity=0.315 Sum_probs=88.5
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhcC
Q psy6736 638 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 717 (1023)
Q Consensus 638 lV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 717 (1023)
.|+|+||- |.-++++.+|.+.-.....-..-|.-.|=+.++ +..+.++ ..+-+.+++++..-.
T Consensus 232 tIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A--------~~Lgv~v-------~E~~~~A~~~~~~v~ 294 (396)
T COG1924 232 TVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIA--------RRLGVDV-------EELGKLALKATPPVK 294 (396)
T ss_pred EEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHH--------HHhCCCH-------HHHHHHHhcCCCCcc
Confidence 78999998 777778878876554444333333223322332 2223322 223333444444211
Q ss_pred CCceeEEEEecccCCcceEEEe-cHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCccccceEEEecCccCcHHHHHHHHHh
Q psy6736 718 SSTQASIEIDSLFEGVDFYTSI-TRARFEELNADLFRGTMEPVEK-SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 795 (1023)
Q Consensus 718 ~~~~~~~~i~~~~~~~~~~~~i-tr~~~~~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~ 795 (1023)
-+....+-.+ .++.-.+ .-...|+++.-+...+.+.+-. +++...+ .+ -|+|+||.+....+.+++++.
T Consensus 295 i~S~CaVF~e-----Sevi~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i--~~--~iv~~GGva~n~av~~ale~~ 365 (396)
T COG1924 295 INSRCAVFAE-----SEVISALAEGASPEDILAGLAYSVAENVAEKVIKRVDI--EE--PIVLQGGVALNKAVVRALEDL 365 (396)
T ss_pred cCCeeEEEeh-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--CC--CEEEECcchhhHHHHHHHHHH
Confidence 1111111111 0000000 0012344555555554444333 4443332 22 299999999999999999999
Q ss_pred hcCcccCCCCCCccceecchHHHHHH
Q psy6736 796 FNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 796 f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+ +.++..+.+|..+-|+|||++|..
T Consensus 366 l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 366 L-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred h-CCeeecCCccchhhHHHHHHHHhh
Confidence 9 688999999999999999999954
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.031 Score=60.78 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=42.5
Q ss_pred CcCeEEEEc-CCCCcHHHHHHHHHHcC--CccccccCCCchhHHhHHHHHHH
Q psy6736 315 QIHDIVLVG-GSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 315 ~i~~V~LvG-G~sr~p~v~~~l~~~f~--~~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.||..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 79999999999998873 46777788999999999999875
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=60.68 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcc----cCCCCCCccceecchHHHH
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE----LNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~----~~~~~~p~~aVa~GAa~~a 819 (1023)
++.-+...+.+.+...++..+.. -+.|+|.||.++.+.+.+.+++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 189 I~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 189 ILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 34444444444444444433211 1359999999999999999999885433 4456688899999999874
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.027 Score=62.82 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=67.2
Q ss_pred cCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhcc
Q psy6736 83 VSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGL 161 (1023)
Q Consensus 83 ~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~ 161 (1023)
+..-+-...++ .|+...-.... .....+++|-|..|....|+.|-+.. +.-+.+-+.+ +..|.+ |+.
T Consensus 75 v~~wd~me~iw-------~~if~~~L~~~-Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~ 142 (372)
T KOG0676|consen 75 VTDWDDMEKIW-------HHLFYSELLVA-PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YAS 142 (372)
T ss_pred ccchHHHHHHH-------HHHHHHhhccC-cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHc
Confidence 43333335565 66662222111 23367999999999999998877654 3333333333 223333 544
Q ss_pred ccccCccccccCCCCCcEEEEEEeCCceEEE-EEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q psy6736 162 DKKVGSTAVEYNGSGERNVLIFDLGGGTFDV-SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 228 (1023)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~vlV~D~GggT~dv-sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 228 (1023)
.+ .+=+|+|+|.|-+++ -+++- . .+...-....+||+++++-+...|.+
T Consensus 143 g~--------------ttG~VvD~G~gvt~~vPI~eG---~-~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 143 GR--------------TTGLVVDSGDGVTHVVPIYEG---Y-ALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred CC--------------eeEEEEEcCCCceeeeecccc---c-ccchhhheecccchhhHHHHHHHHHh
Confidence 33 245999999996654 44432 1 12222334679999999877666665
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.026 Score=62.58 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=40.9
Q ss_pred ceEEEecCccCcHHHHHHHHHhhc----CcccCCCCCCccceecchHHHH
Q psy6736 774 HDIVLVGGSTRIPKVQKLLQDFFN----GKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 774 ~~V~LvGG~srip~v~~~l~~~f~----~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+.|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999984 4567788999999999999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.031 Score=60.06 Aligned_cols=116 Identities=17% Similarity=0.309 Sum_probs=76.1
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhc
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 716 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 716 (1023)
++|+|+|+..+.++++. ++..- ...+..+||+.+..++...+ ..+. ..++.+|...
T Consensus 195 vav~~Igat~s~l~vi~--~gk~l---y~r~~~~g~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~ 250 (354)
T COG4972 195 VAVFDIGATSSELLVIQ--DGKIL---YTREVPVGTDQLTQEIQRAY--------SLTE-----------EKAEEIKRGG 250 (354)
T ss_pred heeeeecccceEEEEEE--CCeee---eEeeccCcHHHHHHHHHHHh--------CCCh-----------hHhHHHHhCC
Confidence 89999999999999987 33221 12346799999998886432 2111 2345555543
Q ss_pred CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCccccceEEEecCccCcHHHHHHHHH
Q psy6736 717 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDIVLVGGSTRIPKVQKLLQD 794 (1023)
Q Consensus 717 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~srip~v~~~l~~ 794 (1023)
.--. +--.+...+.+..+..-|.+.|+- +.-...+|++|+|.||+..+-.+.+++.+
T Consensus 251 ~~P~---------------------~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~q 309 (354)
T COG4972 251 TLPT---------------------DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQ 309 (354)
T ss_pred CCCC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHH
Confidence 2111 112234556666666666666652 22234679999999999999999999999
Q ss_pred hhc
Q psy6736 795 FFN 797 (1023)
Q Consensus 795 ~f~ 797 (1023)
.++
T Consensus 310 rl~ 312 (354)
T COG4972 310 RLS 312 (354)
T ss_pred HhC
Confidence 883
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=64.20 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=42.2
Q ss_pred ceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHH
Q psy6736 774 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 774 ~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 35999999999999999999999 67788899999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0091 Score=61.90 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=53.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCC-ccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 288 EELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
.+++.-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+.+.+.| +.++... +..++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 3444555555554444444433111 223799999999999999999999999 6887665 4489999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.037 Score=62.29 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=84.8
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHH-HHHhCCcCC-----cceEecCCCCCHHHHHH-HHHHHHHcCCceeeeecchH
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTS-EDILRKVDG-----QNEGLIPAYFNISSVKS-TKDSGTIAGLNVLRIINEPT 153 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a-~~~~~~~~~-----~~vitVPa~~~~~qr~~-l~~Aa~~AGl~~~~li~Ep~ 153 (1023)
...+.+++++.+- .+.+.| ...+..+.+ .+|+-||-.|....-+. +.-.....||+-..++-|..
T Consensus 195 ~y~Slq~l~~dlt--------~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESl 266 (618)
T KOG0797|consen 195 PYYSLQRLCEDLT--------AILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESL 266 (618)
T ss_pred cchhHHHHHHHHH--------HHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhh
Confidence 3456677777664 555555 334554443 58999999998777554 45556778999999999999
Q ss_pred HHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q psy6736 154 AAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 228 (1023)
Q Consensus 154 AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 228 (1023)
||.+..|+. .-.|||+|+-+|.++.++-+- . ...+.-....||.||++.|+-.+++
T Consensus 267 aatfGaGls----------------s~CVVdiGAQkTsIaCVEdGv--s-~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 267 AATFGAGLS----------------SACVVDIGAQKTSIACVEDGV--S-LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred HHHhcCCcc----------------ceeEEEccCcceeEEEeecCc--c-ccCceEEeccCCchHHHHHHHHHHh
Confidence 998766553 348999999999999887431 1 1111112468999999999866554
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.049 Score=55.91 Aligned_cols=237 Identities=17% Similarity=0.176 Sum_probs=132.4
Q ss_pred chHHHHHHHH-HhC--CcCCcceEecCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhccccccCccccccCCC
Q psy6736 100 DILKKKTSED-ILR--KVDGQNEGLIPAYFNISSVKSTKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGS 175 (1023)
Q Consensus 100 ~~~l~~~a~~-~~~--~~~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~ 175 (1023)
+.++++++-- .++ ....++.+|-|+--....|+.|-+. .+..||.-+.+.-...-+.++-++.
T Consensus 83 M~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~------------- 149 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL------------- 149 (389)
T ss_pred HHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------------
Confidence 3577776622 232 2334689999998888888887665 5778998766654444443333322
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHH
Q psy6736 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 255 (1023)
Q Consensus 176 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~ 255 (1023)
.=+|+|-|.|-|.+.-+-- +-.+.-+ .+...+.|+|+++-|++.+..+=- ..+-..+ .......
T Consensus 150 ---tGvVvDSGDGVTHi~PVye-~~~l~HL--trRldvAGRdiTryLi~LLl~rGY---afN~tAD-------FETVR~i 213 (389)
T KOG0677|consen 150 ---TGVVVDSGDGVTHIVPVYE-GFVLPHL--TRRLDVAGRDITRYLIKLLLRRGY---AFNHTAD-------FETVREI 213 (389)
T ss_pred ---ceEEEecCCCeeEEeeeec-ceehhhh--hhhccccchhHHHHHHHHHHhhcc---ccccccc-------hHHHHHH
Confidence 2289999999888765432 1111111 233568999999999988775311 0111111 1122334
Q ss_pred hHHcCCC-----------CceEEEEe--cccCCceeEEEecHHHHH---HHhHHHH-----HHHHHHHHHHHHHcCCCc-
Q psy6736 256 KRTLSSS-----------TQASIEID--SLFEGVDFYTSITRARFE---ELNADLF-----RGTMEPVEKSLRDAKMDK- 313 (1023)
Q Consensus 256 K~~Ls~~-----------~~~~i~i~--~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~~- 313 (1023)
|+.|..- .++.+-++ .+.+|.- +.+-.+.|+ .+++|-+ ..+.+++-.+++.+.+..
T Consensus 214 KEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R 291 (389)
T KOG0677|consen 214 KEKLCYISYDLELEQKLALETTVLVESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIR 291 (389)
T ss_pred HhhheeEeechhhhhHhhhhheeeeeeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchH
Confidence 4443211 11222222 2334432 344455554 4555533 234556666666665431
Q ss_pred -cCcCeEEEEcCCCCcHHHHHHHHHHcC---------Cc---------cccccCCCchhHHhHHHHHHHHHhC
Q psy6736 314 -AQIHDIVLVGGSTRIPKVQKLLQDFFN---------GK---------ELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 314 -~~i~~V~LvGG~sr~p~v~~~l~~~f~---------~~---------~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
+=-.+|+|.||++--|.+-..|++.+. +. .+..+..-...|-.|.|..|.++..
T Consensus 292 ~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 292 SELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 223679999999999988777665431 11 1222223345788888888887764
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=61.51 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccC-CCCCCccceecchHHHHHH
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~-~~~~p~~aVa~GAa~~a~~ 821 (1023)
++.-++..+.+.+...++..++. +.|+|.||.++.|.+++.+++.+ +.++. .+.+|+.+-|+|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 33344444444444444433322 35999999999999999999999 45555 5778999999999999954
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.015 Score=60.27 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-ccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 744 FEELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 744 ~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
..++..-+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.| +.++....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 45555666666665555555443111 234789999999999999999999999 566654444 89999999999964
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.049 Score=63.08 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=39.1
Q ss_pred cceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHH
Q psy6736 773 IHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 773 i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
...|+|+||+|.+|.+...|.+.+.. ..+..+.+|...+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 46799999999999999999887632 2345566888999999999986
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.014 Score=66.42 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++++|+||||+++++++ +|.+.-... ..+||+.+... -+ +.-....+. .+++.+ .
T Consensus 143 Eke~gVa~IDIGgGTT~iaVf~--~G~l~~T~~---l~vGG~~IT~D-~~----------~~i~yis~~-~~~l~~---~ 202 (475)
T PRK10719 143 ERNTRVLNIDIGGGTANYALFD--AGKVIDTAC---LNVGGRLIETD-SQ----------GRVTYISPP-GQMILD---E 202 (475)
T ss_pred hccCceEEEEeCCCceEEEEEE--CCEEEEEEE---EecccceEEEC-CC----------CCEEEEChH-HHHHHH---H
Confidence 7788899999999999999987 664433322 56899887532 10 000001111 122211 1
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHH--------HHHHcCCC-ccccceEEEecCc
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEK--------SLRDAKMD-KAQIHDIVLVGGS 782 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~--------~l~~~~~~-~~~i~~V~LvGG~ 782 (1023)
+-..+.. --.++.+++..+|+-+.+-+.+.+.. ++....+. ...++.|.+.||-
T Consensus 203 ~~~~~~~-----------------G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGV 265 (475)
T PRK10719 203 LGLAITD-----------------GRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGV 265 (475)
T ss_pred cCCCccc-----------------cccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecch
Confidence 1111111 12467788888877776666655542 11111233 3578999999998
Q ss_pred cCc
Q psy6736 783 TRI 785 (1023)
Q Consensus 783 sri 785 (1023)
+..
T Consensus 266 ad~ 268 (475)
T PRK10719 266 GDC 268 (475)
T ss_pred Hhh
Confidence 765
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.24 Score=57.09 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=102.6
Q ss_pred EEEEEeCCceEEEEEEEEe-------CCEEEEEEecCCCCccHHHHHHHHHHHHHHHHH---------hhhccCccccHH
Q psy6736 180 VLIFDLGGGTFDVSILTIE-------DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK---------RKYKKDLTTNKR 243 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~-------~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~---------~~~~~~~~~~~~ 243 (1023)
-|++=+|-+|+++.+-+.. +.....+....-..=||..-.=.|.+||.+... .+.+.++.. .
T Consensus 270 ~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~--~ 347 (544)
T COG1069 270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYE--S 347 (544)
T ss_pred eEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHH--H
Confidence 4666678888887766532 112222222222234788778888888877632 111111111 1
Q ss_pred HHHHHHHHHHHHhHHcCCCCceEEEEecccCC------ce-------eEEEecHHHHHHHhHHHHHHHH---HHHHHHHH
Q psy6736 244 ALRRLRTACERAKRTLSSSTQASIEIDSLFEG------VD-------FYTSITRARFEELNADLFRGTM---EPVEKSLR 307 (1023)
Q Consensus 244 ~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~------~~-------~~~~itr~~~e~~~~~~~~~i~---~~i~~~l~ 307 (1023)
...++..-+++++...+... ....++.+..+ .+ +++.-+.+.+-.+....+..+. ..|-++++
T Consensus 348 ~~~~~~~l~~~~~~~~~l~~-~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~ 426 (544)
T COG1069 348 LAQRLELLTEAAAAIPPLAS-GLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFE 426 (544)
T ss_pred HHHHHHHHHhhHhccCcccC-CcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 23334444455555543222 12222222211 11 1222234434344444444443 45556666
Q ss_pred HcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 308 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 308 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
+.++. |+.|+..||-.+.|.+.+.+.+.. +.++..+ ..+++++.|+|+.|+.-.+
T Consensus 427 ~~g~~---Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 427 DQGIA---IDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HcCCe---eeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 66654 799999999999999999999998 6777655 7789999999999876543
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.054 Score=51.08 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=29.4
Q ss_pred EEEEEeCCceEEEEEEEEe-CCEEEEEEecCCCCcc--HHHHH--HHHHHHHHHHHH
Q psy6736 180 VLIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTHLG--GEDFD--NRMVNHFVQEFK 231 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lG--G~~~D--~~l~~~l~~~~~ 231 (1023)
++++|+|++++.+.+++.. .+.+.++..+.....| |..+. +.+..-+...+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~ 57 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIE 57 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--HH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHH
Confidence 5899999999999999973 3445554432211111 77777 666665555443
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.075 Score=64.19 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 290 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
++..+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++...-. .++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCC-CCchHHHHHHHHHH
Confidence 34445555554444444444332 34789999999999999999999999 677765544 47889999999975
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.069 Score=63.70 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=56.2
Q ss_pred cHHHHHHH-hHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 283 TRARFEEL-NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 283 tr~~~e~~-~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
+|.+|-.. ++.+.-.+...+ +.+++.+. .++.|+++||+++++...+.+.+.+ +.++....+.+++.++|||+.
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHH
Confidence 45555432 223322323333 34444443 3688999999999999999999999 788866667777899999999
Q ss_pred HHHHhC
Q psy6736 362 AAILHG 367 (1023)
Q Consensus 362 a~~l~~ 367 (1023)
|+.-.+
T Consensus 432 A~~~~G 437 (484)
T PRK15027 432 AQIAAN 437 (484)
T ss_pred HHHhcC
Confidence 986654
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.073 Score=64.32 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=62.1
Q ss_pred EecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 281 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 281 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
.-+|..+.+++..+++.+.-.++..++...-....++.|.++||.++++...+.+.+.+ +.++....+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 33566667777777777765555554433211224788999999999999999999999 788876644 5688999999
Q ss_pred HHHHHhC
Q psy6736 361 QAAILHG 367 (1023)
Q Consensus 361 ~a~~l~~ 367 (1023)
.|+.-.+
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9976544
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.088 Score=57.95 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 289 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
.+++-..+++.+.|++.....+..+.+. .++.+||.+ |++...|.+.++-..+..+..|.-+-|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3444455555566666655556555432 255566665 67778888877444566666678899999985
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.085 Score=62.93 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchH
Q psy6736 740 TRARFEELNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 816 (1023)
Q Consensus 740 tr~~~~~~~~~~~~~~~~~i~~---~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa 816 (1023)
+|.+|-. .+++.+.-.++. .+++.+. .++.|+++||+++.+...+++.+.| +.++....+.+++.|+|||
T Consensus 357 ~~~~l~r---AvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 357 GPNELAR---AVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 4554443 444444333333 3444333 4788999999999999999999999 6777556667778999999
Q ss_pred HHHHHHhC
Q psy6736 817 VQAAILHG 824 (1023)
Q Consensus 817 ~~a~~l~~ 824 (1023)
+.|+.-.|
T Consensus 430 ~lA~~~~G 437 (484)
T PRK15027 430 RLAQIAAN 437 (484)
T ss_pred HHHHHhcC
Confidence 99987654
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=62.94 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+.|.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555544332 34789999999999999999999999 5666554444 7889999999975
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.067 Score=61.00 Aligned_cols=74 Identities=27% Similarity=0.415 Sum_probs=47.1
Q ss_pred HHHHHHHHcccCCCCCCCCCCC---CCCCCCCCC-CCCCCCCCccCCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEe
Q psy6736 589 NPIITKLYQGSGGAPGGFPGAP---GAGAPPSGA-PGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKST 664 (1023)
Q Consensus 589 ~pi~~r~~e~~g~~~~~~p~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~ 664 (1023)
+++...+.+.+| .| +|+++.++- +|..+|+..-..+....|+=+|+||||+.+++++ .| ++.++
T Consensus 101 ~~v~~~Ls~~aG--------DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~--~G--~v~~T 168 (473)
T PF06277_consen 101 REVLHALSGFAG--------DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFD--NG--EVIDT 168 (473)
T ss_pred HHHHHHHHHhcC--------CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEE--CC--EEEEE
Confidence 445666666676 22 233433222 4455555444446677899999999999999987 55 34444
Q ss_pred cCCCCCcHHHH
Q psy6736 665 AGDTHLGGEDF 675 (1023)
Q Consensus 665 ~gd~~lGG~~~ 675 (1023)
+. .+.||+-|
T Consensus 169 ~c-l~IGGRLi 178 (473)
T PF06277_consen 169 AC-LDIGGRLI 178 (473)
T ss_pred EE-EeeccEEE
Confidence 44 66899865
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.14 Score=61.40 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=43.4
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||++++|...+.+.+.| +.++... +..++.++|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 3688999999999999999999999 7888654 4567889999999976544
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.11 Score=62.95 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHH
Q psy6736 740 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 740 tr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+|..+..++..+++.+.-.++..++...-....++.|.++||.++.|...+.+.+.+ +.++....+ .++.|+|||+.|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHHHH
Confidence 566677777888887766655555543211224788999999999999999999999 677766555 457899999999
Q ss_pred HHHhC
Q psy6736 820 AILHG 824 (1023)
Q Consensus 820 ~~l~~ 824 (1023)
+.-.|
T Consensus 489 ~~~~G 493 (541)
T TIGR01315 489 AKAAG 493 (541)
T ss_pred HHhcC
Confidence 76544
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.13 Score=62.39 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHH---HHHHHHcCCCccCcCeEEEEcCC-CCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 290 LNADLFRGTMEPV---EKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 290 ~~~~~~~~i~~~i---~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
++..+++.+.-.+ .+.|++.+. .++.|.++||+ ++++.+.+.+.+.| +.++... .+.++.++|||+.|+.-
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~ 487 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVA 487 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHH
Confidence 3444444444333 333444433 46889999999 99999999999999 7887544 45678899999999865
Q ss_pred hC
Q psy6736 366 HG 367 (1023)
Q Consensus 366 ~~ 367 (1023)
.+
T Consensus 488 ~G 489 (548)
T PRK04123 488 AG 489 (548)
T ss_pred hc
Confidence 43
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.13 Score=61.42 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=43.5
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++...+.+.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhcC
Confidence 3688999999999999999999999 7888654 5567889999999976544
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.18 Score=60.30 Aligned_cols=51 Identities=35% Similarity=0.599 Sum_probs=44.1
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||.++++.+.+.+.+.| +.++... +..++.++|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 4788999999999999999999999 7887655 4667899999999987654
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.17 Score=60.03 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHHHH---HHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 290 LNADLFRGTMEPVE---KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 290 ~~~~~~~~i~~~i~---~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
++..+++.+.-.++ +.+++.+. ..++.|.++||++++|...+.+.+.| +.++...-+ .++.++|||+.|+.-.
T Consensus 367 l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 367 IYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHHhc
Confidence 44444444433333 34444321 23688999999999999999999999 788865544 5788999999998654
Q ss_pred C
Q psy6736 367 G 367 (1023)
Q Consensus 367 ~ 367 (1023)
+
T Consensus 443 G 443 (465)
T TIGR02628 443 G 443 (465)
T ss_pred C
Confidence 4
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.19 Score=60.27 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=43.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 316 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 316 i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
++.|.++||.++++.+.+.+.+.| +.++... ...++.++|||+.|+.-.+
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVG 456 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcC
Confidence 688999999999999999999999 7888655 4556889999999986554
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.18 Score=59.91 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=43.4
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++...+.+.+.+ +.++... +..++.++|||+.|+.-.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 7888655 4557889999999976544
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.74 Score=53.23 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=99.9
Q ss_pred eEEEEEeCCceEEEEEEEEeC---C----EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH---------hhhccCcchhH
Q psy6736 636 NVLIFDLGGGTFDVSILTIED---G----IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK---------RKYKKDLTTNK 699 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~---~----~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~---------~~~~~~~~~~~ 699 (1023)
+-|++=+|-+||++.+-+-.. | ....+--+.-..=||..-.=+|.+||.+... .+++.++..
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~-- 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYE-- 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHH--
Confidence 345556788888887765321 1 1111111111223788888888888887642 122221111
Q ss_pred HHHHHHHHHHHHHhhhcCCCceeEEEEecccC------Ccce-------EEEecHHHHHHHHHHHHHHHH---HHHHHHH
Q psy6736 700 RALRRLRTACERAKRTLSSSTQASIEIDSLFE------GVDF-------YTSITRARFEELNADLFRGTM---EPVEKSL 763 (1023)
Q Consensus 700 ~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~------~~~~-------~~~itr~~~~~~~~~~~~~~~---~~i~~~l 763 (1023)
....++..-+++.+...+-... -..++.+.. +.+. ++.=+.+.+-.+....+.-+- ..|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2233444444555555432221 122222211 1111 222234433344444444332 3444555
Q ss_pred HHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 764 RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 764 ~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++.++ .|+.|+..||-.+.|.+.+.+.+.. +.++..+ ..+++++.|+|++|+.-.+
T Consensus 426 ~~~g~---~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQGI---AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcCC---eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 66554 5789999999999999999999988 5555444 6688999999999986544
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.22 Score=60.12 Aligned_cols=51 Identities=27% Similarity=0.479 Sum_probs=43.6
Q ss_pred CcCeEEEEcCC-CCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+ ++++.+.+.+.+.| +.+|....+ .++.|.|||+.|+.-.+
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 47899999999 99999999999999 788866655 46889999999986554
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.26 Score=59.27 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=43.5
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||++++|...+.+.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 7888644 5567889999999876554
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.35 Score=53.03 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=37.8
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 686 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~ 686 (1023)
.+-||+|+|++++.||=+. +|.+--.+.-. .+|||+.++..+.+.|...
T Consensus 154 stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4589999999999988765 55443334433 7899999999999988765
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.63 Score=50.39 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=85.4
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
..++++.+|.| +|+++++.. ...-..| ..+||-.|= -|+..+... .+ ...|.+.|++-
T Consensus 101 ~p~llvnIGsG---vSi~~v~~~--~~~Rv~G-t~iGGGTf~-GL~~LL~~~----------~~---~~el~~lA~~G-- 158 (279)
T TIGR00555 101 YPYLLVNIGTG---TSILYVDGD--NYERVGG-TSLGGGTFL-GLGKLLTGI----------QT---FDELLEMAQHG-- 158 (279)
T ss_pred CceEEEEecCC---eEEEEEcCc--cEEEEcC-ccccHHHHH-HHHHHHcCC----------CC---HHHHHHHHHcC--
Confidence 34899999887 788888766 4444455 568876654 555555411 01 12233322221
Q ss_pred hcCCCceeEEEEecccCCc----c-------------e----EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Q psy6736 715 TLSSSTQASIEIDSLFEGV----D-------------F----YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 773 (1023)
Q Consensus 715 ~Ls~~~~~~~~i~~~~~~~----~-------------~----~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i 773 (1023)
.+...++-+.+++.+. . + .-..+ =|+++..++.-+...|-. |.........+
T Consensus 159 ---~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~---~eDiAaSLl~mV~~nIg~-lA~~~a~~~~~ 231 (279)
T TIGR00555 159 ---DRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFS---PEDIAASLLGLIGNNIGQ-IAYLCALRYNI 231 (279)
T ss_pred ---CCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCC---HHHHHHHHHHHHHHHHHH-HHHHHHHHcCC
Confidence 1122233333333210 0 0 00122 234444555544443222 11111123457
Q ss_pred ceEEEecC-ccCcHHHHHHHHHhh--cCcccCCCCCCccceecchHH
Q psy6736 774 HDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 774 ~~V~LvGG-~srip~v~~~l~~~f--~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
..|+++|| .+..|.+++.+...+ -+.++..+.|+...+|.||++
T Consensus 232 ~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 232 DRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 88999999 677999999998875 235667788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.3 Score=58.57 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=43.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||.++++...+.+.+.| +.++...- ..++.++|||+.|+.-.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHHHHHhcC
Confidence 4789999999999999999999999 78886554 446889999999976544
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.23 Score=59.41 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 745 EELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
..++..+++.+.-.++..++... .....++.|.++||.++.|...+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 33455555555544444443322 11224788999999999999999999999 5777544 455788999999997654
Q ss_pred C
Q psy6736 824 G 824 (1023)
Q Consensus 824 ~ 824 (1023)
|
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 4
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.21 Score=59.72 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 746 ELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 746 ~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++..+++.+.-.++..++... .....++.|.++||.++.+...+++.+.| +.++.. .+..++.|+|||+.|+.-.|
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhcC
Confidence 3444555555444444443321 11224788999999999999999999999 677654 34467889999999976544
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.26 Score=58.24 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=42.6
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||++++++..+.+.+.+ +.++... +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 3788999999999999999999999 7888543 367899999999986554
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.28 Score=58.51 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 745 EELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
..+...+++.+.-.++..++... .....++.|.++||.++.+.+.+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 33444555554444444433221 11124789999999999999999999999 5666544 466789999999998765
Q ss_pred C
Q psy6736 824 G 824 (1023)
Q Consensus 824 ~ 824 (1023)
+
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 4
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.27 Score=59.63 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCc-cCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 746 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++..+++.+.-.+...++...-....++.|.++||+ ++.+...+++.+.| +.++... .+.|+.|+|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555555444433333222112247889999999 99999999999999 5666444 4567889999999986544
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.29 Score=59.20 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCc-cCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~-srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
+...+++.+.-.++..++...-....++.|.++||. ++.+.+.+++.+.| +.++....+ .++.|+|||+.|+.-.|
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 444455554433333333222112347899999999 99999999999999 677755555 46889999999987654
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.25 Score=58.54 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 745 EELNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~---~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
..++..+++.+.-.++. .+++.+ ...++.|.++||+++.|...+++.+.| +.++....+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 33455555555444444 344332 123688999999999999999999999 577755544 46889999999986
Q ss_pred HhC
Q psy6736 822 LHG 824 (1023)
Q Consensus 822 l~~ 824 (1023)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 544
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.1 Score=50.12 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=52.4
Q ss_pred EEEecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCc-------------
Q psy6736 736 YTSITRARFEELNADL---FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK------------- 799 (1023)
Q Consensus 736 ~~~itr~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~------------- 799 (1023)
.+.|.-.++++.+-.. +......+-+++. --+-|.++|+|--||+|.|+..++...+-.
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn-----~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAIN-----HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHh-----hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3566666666543322 2222333333332 234578999999999999999998775311
Q ss_pred ------ccCCCCCCccceecchHHHHHHHh
Q psy6736 800 ------ELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 800 ------~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
+-.+-.||...+|.||-+.+..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 112334999999999988886543
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.42 Score=44.98 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=27.1
Q ss_pred EEEEEeCCceEEEEEEEE-eCCEEEEEEecCCCCCc--HHHHH--HHHHHHH
Q psy6736 637 VLIFDLGGGTFDVSILTI-EDGIFEVKSTAGDTHLG--GEDFD--NRMVNHF 683 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~-~~~~~~v~~~~gd~~lG--G~~~D--~~l~~~~ 683 (1023)
|+++|+|++++.+.+.+. ..+.++++..+.-...| |..+. +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 679999999999999996 44455666433211111 66666 5555433
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.44 Score=53.43 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=46.9
Q ss_pred HHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 307 RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 307 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
+.-+....+.+.|+.|||.||...|-+.|.+.| +.++..- +..++.+.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 344555667789999999999999999999999 7777644 8889999999999764
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.28 Score=58.86 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 746 ELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 746 ~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++..+++.+.-.++..++...- ....++.|.++||.++.+...+++.+.| +.++.... ..++.|+|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34445555555444444433211 1123788999999999999999999999 66665444 556889999999986544
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.32 Score=58.56 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=43.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++...+.+.+.+ +.++....+ .++.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHHHHHHHHHhC
Confidence 3788999999999999999999999 788876644 46789999999876544
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=92.01 E-value=2.6 Score=45.76 Aligned_cols=72 Identities=18% Similarity=0.072 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcC-CCCcHHHHHHHHHHc--CCccccccCCCchhHHhHHHH
Q psy6736 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG-~sr~p~v~~~l~~~f--~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
|+++..++.-+...|-..-. .......+..|+++|| .+..|.+++.+...+ .+.++..+.|+...+|.||++
T Consensus 204 eDiAaSLl~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34455555554443322211 1112345788999999 778999999998775 345677788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=92.01 E-value=5 Score=43.77 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHH----cCCccccccCCCchhHHhHHHHHH
Q psy6736 289 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF----FNGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~----f~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
+++....+.+.+.+..++........ .|+|+||..+.+.+++.+.+. .+..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34455555556666666665543321 299999999997777766443 334455667789999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.12 Score=57.96 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=32.4
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcC-----cc--cCCCCCCccceecchHHHHH
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNG-----KE--LNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~-----~~--~~~~~~p~~aVa~GAa~~a~ 820 (1023)
-...|+|+||+|-+|.+.+++.+.+.. .+ +..+.+...+|=.|+++.|.
T Consensus 290 L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 290 LYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 346799999999999999988876521 11 22222223456677777764
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.49 Score=54.99 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCc-cCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 293 DLFRGTMEPVEKSLRDAKMDK-AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 293 ~~~~~i~~~i~~~l~~~~~~~-~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
..++.+.--.+..|+...... ..|+.+.+.||.|+.|.+-+.+.+.+ +.++..+.++|. ++.|||+.|+..++
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 444444433333333322222 45788999999999999999999999 689998888887 99999999988776
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.33 Score=57.71 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
+...+++.+.-.++..++... .....++.|.++||+++.|...+++.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 363 l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhcC
Confidence 444555555444444443322 11234789999999999999999999999 56665444 456889999999976543
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.37 Score=57.13 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=42.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++...+.+.+.+ +.++... . .++.+.|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 3688999999999999999999999 7888544 2 37999999999876554
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.38 Score=57.72 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 745 EELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
..++..+++.+.-.+...+.... .....++.|.++||.++.+...+++.+.| +.++....+ .++.++|||+.|+.-.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGLKAL 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHHHhc
Confidence 34455555555444443322210 01124789999999999999999999999 577755544 4688999999997654
Q ss_pred C
Q psy6736 824 G 824 (1023)
Q Consensus 824 ~ 824 (1023)
|
T Consensus 451 G 451 (505)
T TIGR01314 451 G 451 (505)
T ss_pred C
Confidence 4
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=91.36 E-value=4.2 Score=43.87 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCcceEecCCC-CCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEE
Q psy6736 115 DGQNEGLIPAY-FNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVS 193 (1023)
Q Consensus 115 ~~~~vitVPa~-~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 193 (1023)
...+|+|=|.+ |..-|.....-..+..++.- +..-+.|+..++-....... ..+. ......+|+|-|.+-|-+.
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne--~~tt-~~~~c~lVIDsGysfThIi 167 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNE--DSTT-TSSECCLVIDSGYSFTHII 167 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCc--cccc-cccceEEEEeCCCceEEEe
Confidence 35689999954 45556666666667777764 34444444444431111110 0111 2466899999999877654
Q ss_pred EEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q psy6736 194 ILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 227 (1023)
Q Consensus 194 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 227 (1023)
-+-.+.. ...+.- -..+||..++..|.+.+.
T Consensus 168 p~v~g~~--~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 168 PVVKGIP--YYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred hhhcCcc--hhhceE-EeecchHHHHHHHHHHhh
Confidence 3322111 111111 257999999998877654
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.49 Score=56.83 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc----CC--CccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHH
Q psy6736 745 EELNADLFRGTMEPVEKSLRDA----KM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 818 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~l~~~----~~--~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~ 818 (1023)
..++..+++.+.-.++..++.. +. ....++.|.++||+++.|...+++.+.| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 3345555555554444444432 21 1234788999999999999999999999 6776443 4557889999999
Q ss_pred HHHHhC
Q psy6736 819 AAILHG 824 (1023)
Q Consensus 819 a~~l~~ 824 (1023)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 976544
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.49 Score=56.99 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=42.6
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||+++.+...+++.+.| +.++....+ .++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHHHHHHHHHhC
Confidence 4788999999999999999999999 677765554 46789999999976544
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.58 Score=54.41 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCc-cccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDK-AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 825 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~-~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~ 825 (1023)
+....++.+.--++..|+...... ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.++|. |+.|||+.|+..++.
T Consensus 388 ia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 388 LARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444433333333322222 46788999999999999999999999 588888888887 999999999887653
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1 Score=53.83 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=48.0
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHc-CCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 283 TRARFEELNADLFRGTMEPVEKSLRDA-KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 283 tr~~~e~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
+|.+|-..+-+-+.-......+.|++. +. .++.|.++||++|.++..+++.+.+ +.++..+.. .|+.+.|+|..
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~ 445 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAAL 445 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHH
Confidence 555554333222222223333444444 33 3578999999999999999999999 788875534 45555555544
Q ss_pred HHHH
Q psy6736 362 AAIL 365 (1023)
Q Consensus 362 a~~l 365 (1023)
++..
T Consensus 446 ~~~~ 449 (502)
T COG1070 446 AAAA 449 (502)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.44 Score=56.35 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||+++.++..+++.+.+ +.++... +.++.|+|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4788999999999999999999999 6776433 367899999999987554
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.81 Score=50.39 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHH
Q psy6736 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 751 ~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
..+.+.+.|++.....+..+.+ -.++.+||.+ |++-..|.+.++-..+..+..|.-+-|.||++
T Consensus 220 ~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 220 ANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344445555554444555443 2355566665 67777777777545566666678888999884
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.71 Score=51.81 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=45.2
Q ss_pred HcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 765 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 765 ~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
.-+......+.|+.|||.||...|-+.|.+.| +.++.. ++..++.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~-~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYT-IEGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEe-ecCCchhhHHHHHHHHH
Confidence 34555557789999999999999999999999 566543 37888999999999864
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.35 Score=55.16 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCCccC--cCeEEEEcCCCCcHHHHHHHHHHcCC-------ccccccCCCchhHHhHHHHHHHH
Q psy6736 298 TMEPVEKSLRDAKMDKAQ--IHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 298 i~~~i~~~l~~~~~~~~~--i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
+.+.+...|+.....-.. +..|+|+||+|.+|.+.+.|+..+-+ ..|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 345555566554322222 78899999999999999999987622 34566779999999999999975
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.64 Score=55.15 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=41.4
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||+++.+...+++.+.+ +.++... +.++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999 5676443 237889999999976554
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.8 Score=51.64 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHHh-ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecC
Q psy6736 131 VKSTKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAG 209 (1023)
Q Consensus 131 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~ 209 (1023)
...+.++-+..|+++ ++|+-.+=|-+.| +.....+ .....+|+|+|||+|.+++++-..... ..
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~---------~~~~~lviDIGGGStEl~~~~~~~~~~-----~~ 158 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG---------GADQRLVVDIGGASTELVTGTGAQATS-----LF 158 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC---------CCCCEEEEEecCCeeeEEEecCCceee-----ee
Confidence 344666667779998 5666555554544 4433221 223589999999999999876322111 22
Q ss_pred CCCccHHHHHHHH
Q psy6736 210 DTHLGGEDFDNRM 222 (1023)
Q Consensus 210 ~~~lGG~~~D~~l 222 (1023)
...+|...+.+.+
T Consensus 159 Sl~lG~vrl~e~f 171 (496)
T PRK11031 159 SLSMGCVTWLERY 171 (496)
T ss_pred EEeccchHHHHHh
Confidence 3578887766554
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=84.97 E-value=8.5 Score=42.64 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCc---cccccCCC----chhHHhHHHHHHHHH
Q psy6736 293 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINP----DEAVAYGAAVQAAIL 365 (1023)
Q Consensus 293 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~---~i~~~~~p----d~aVa~GAa~~a~~l 365 (1023)
.+++.+.+.|...+. ...+++.|+|.|-.+++|-+.+.+++.|.+. ++ ..+.+ -...|.|||+.|.-+
T Consensus 242 a~~E~i~k~V~~l~~----~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 242 AMIESIVKAVASLLA----SVPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHhc----ccCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhh
Confidence 344444444443332 2346788999999999999988888777321 12 12222 234889999998777
Q ss_pred hC
Q psy6736 366 HG 367 (1023)
Q Consensus 366 ~~ 367 (1023)
.+
T Consensus 317 aG 318 (343)
T PF07318_consen 317 AG 318 (343)
T ss_pred hc
Confidence 65
|
The function of this family is unknown. |
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=84.88 E-value=75 Score=36.17 Aligned_cols=83 Identities=19% Similarity=0.144 Sum_probs=56.7
Q ss_pred EEecHHHHHHHhHHHHHHHH-HHHHHHHHHcCCCccCcCe-EEEEcCCCCcHHHHHHHHHHcCCccccc-cCCCchhHHh
Q psy6736 280 TSITRARFEELNADLFRGTM-EPVEKSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEAVAY 356 (1023)
Q Consensus 280 ~~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~~-~~~pd~aVa~ 356 (1023)
..-.+.++...++..+++++ ..++.+++..+ ++. +.|.||.+..-..-..|.+..+-..+.. +.-.|.-+|.
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34567777777787777665 55566666666 355 9999999999888888888743344443 3455899999
Q ss_pred HHHHHHHHHhC
Q psy6736 357 GAAVQAAILHG 367 (1023)
Q Consensus 357 GAa~~a~~l~~ 367 (1023)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999976543
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.47 E-value=2 Score=51.43 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchH
Q psy6736 740 TRARFEELNADLFRGTMEPVE---KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 816 (1023)
Q Consensus 740 tr~~~~~~~~~~~~~~~~~i~---~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa 816 (1023)
+|.+|- +.+++.+.-.+. +.|++. ....++.|.++||++|.++..+++.+.+ +.++..+. ..|+.+.|+|
T Consensus 371 ~~~~l~---ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~-~~e~~a~g~A 443 (502)
T COG1070 371 TRAHLA---RAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPE-VEEAGALGGA 443 (502)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecC-cccchHHHHH
Confidence 454444 344444433333 344433 2234578999999999999999999999 56665443 3456656665
Q ss_pred HHHHHHh
Q psy6736 817 VQAAILH 823 (1023)
Q Consensus 817 ~~a~~l~ 823 (1023)
..++...
T Consensus 444 ~~~~~~~ 450 (502)
T COG1070 444 ALAAAAL 450 (502)
T ss_pred HHHHHHh
Confidence 5555443
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=84.25 E-value=0.86 Score=52.20 Aligned_cols=49 Identities=18% Similarity=0.368 Sum_probs=41.3
Q ss_pred cceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHHH
Q psy6736 773 IHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 773 i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
+..|+|+||+|.+|.+.+.|.+.+.+ ..+....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 68899999999999999999987632 34566779998899999999865
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.00 E-value=8.9 Score=45.26 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhCCcCCcceEecCCCCCHHH------HHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCC
Q psy6736 101 ILKKKTSEDILRKVDGQNEGLIPAYFNISS------VKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNG 174 (1023)
Q Consensus 101 ~~l~~~a~~~~~~~~~~~vitVPa~~~~~q------r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~ 174 (1023)
..|+..++-.-+..+..+ ..| -|..- -+.+..+-+..|+++--+=-|-+|--..+|.-...+
T Consensus 59 ~aL~~f~e~~~~~~~~~v-~~v---ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~-------- 126 (492)
T COG0248 59 SALKRFAELLDGFGAEEV-RVV---ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP-------- 126 (492)
T ss_pred HHHHHHHHHHhhCCCCEE-EEe---hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC--------
Confidence 455555554444455553 222 22333 355788888889988544445555444444443321
Q ss_pred CCCcEEEEEEeCCceEEEEEEEE
Q psy6736 175 SGERNVLIFDLGGGTFDVSILTI 197 (1023)
Q Consensus 175 ~~~~~vlV~D~GggT~dvsv~~~ 197 (1023)
.....+|+|+|||+|.+++..-
T Consensus 127 -~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 127 -RKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred -CCCCEEEEEecCCeEEEEEecC
Confidence 2566899999999999999874
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=82.24 E-value=2.1 Score=47.16 Aligned_cols=74 Identities=20% Similarity=0.438 Sum_probs=42.0
Q ss_pred HHHHHHHcCCceeeeecchHHHHHHh-ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCC
Q psy6736 134 TKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 212 (1023)
Q Consensus 134 l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 212 (1023)
+.+.-+..|+++ .+|+..+=|.+.| +..... ......+|+|+|||+|.+++++- +.+.- .....
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l---------~~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~ 141 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSL---------PPDKNGLVIDIGGGSTELILFEN--GKVVF---SQSLP 141 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS---------TTTSSEEEEEEESSEEEEEEEET--TEEEE---EEEES
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc---------cccCCEEEEEECCCceEEEEEEC--CeeeE---eeeee
Confidence 444456679988 5555555444444 332221 13456899999999999998864 22211 12257
Q ss_pred ccHHHHHHHH
Q psy6736 213 LGGEDFDNRM 222 (1023)
Q Consensus 213 lGG~~~D~~l 222 (1023)
+|...+.+.+
T Consensus 142 lG~vrl~e~~ 151 (285)
T PF02541_consen 142 LGAVRLTERF 151 (285)
T ss_dssp --HHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8888876655
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=3.6 Score=49.27 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHh-ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 210 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~ 210 (1023)
..+.++-+..|+++ ++|+-.+=|.+.| +.....+ .....+|+|+|||+|.+++++-..... ..+
T Consensus 100 ~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~---------~~~~~lvvDIGGGStEl~~~~~~~~~~-~~S---- 164 (513)
T PRK10854 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP---------EKGRKLVIDIGGGSTELVIGENFEPIL-VES---- 164 (513)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC---------CCCCeEEEEeCCCeEEEEEecCCCeeE-eEE----
Confidence 34555666679998 5666555555555 4433321 224689999999999999987432221 111
Q ss_pred CCccHHHHHHHH
Q psy6736 211 THLGGEDFDNRM 222 (1023)
Q Consensus 211 ~~lGG~~~D~~l 222 (1023)
..+|...+.+.+
T Consensus 165 ~~lG~vrl~e~f 176 (513)
T PRK10854 165 RRMGCVSFAQLY 176 (513)
T ss_pred EecceeeHHhhh
Confidence 267776665544
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=80.52 E-value=37 Score=37.81 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=41.7
Q ss_pred cCCcceEecCCCCCHHH------------HHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEE
Q psy6736 114 VDGQNEGLIPAYFNISS------------VKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNV 180 (1023)
Q Consensus 114 ~~~~~vitVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~v 180 (1023)
.+..+.|++|..++... .-.+.+.. +..|++ +.+.|+..|+|++-....... ..+++
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~---------~~~~~ 126 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGK---------GARDV 126 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccC---------CCCcE
Confidence 35567788886553221 11233333 334776 579999999998654322111 34678
Q ss_pred EEEEeCCceEEEEEE
Q psy6736 181 LIFDLGGGTFDVSIL 195 (1023)
Q Consensus 181 lV~D~GggT~dvsv~ 195 (1023)
+++.+|.|- -.+++
T Consensus 127 ~~v~igtGi-G~giv 140 (318)
T TIGR00744 127 ICITLGTGL-GGGII 140 (318)
T ss_pred EEEEeCCcc-EEEEE
Confidence 889999874 55554
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=80.13 E-value=16 Score=48.39 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=48.2
Q ss_pred ecHHHHHHHhHHHH-HHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 282 ITRARFEELNADLF-RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 282 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
++-++..+-+..+. ..+.+.|+......+..+.+ -.++..||+ =|...-.|.+.++=..+..+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34445544333333 34445666666666666543 224444444 478888899999444577888999999999986
Q ss_pred H
Q psy6736 361 Q 361 (1023)
Q Consensus 361 ~ 361 (1023)
-
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1023 | ||||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 0.0 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-168 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 0.0 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-167 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 0.0 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-163 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-120 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 2e-99 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-119 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 2e-99 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-118 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-97 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-118 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-97 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-118 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 2e-97 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-118 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 5e-97 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-97 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-118 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 5e-97 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 7e-97 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-118 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 7e-97 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-118 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 8e-97 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-117 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-96 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-116 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 6e-95 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-116 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 7e-95 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-116 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 7e-95 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-116 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 8e-95 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-116 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 9e-95 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-115 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 9e-95 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-115 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 9e-95 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-114 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-96 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-114 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-96 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-114 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 2e-96 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-114 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 9e-95 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-114 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 6e-96 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-113 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 5e-93 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-113 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-92 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-93 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-112 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-93 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-112 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-93 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-112 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-93 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-112 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-93 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-112 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-93 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-111 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-92 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-111 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 8e-93 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-98 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 9e-80 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 7e-97 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 3e-78 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-93 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 2e-72 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 3e-93 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 2e-92 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 2e-90 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 2e-69 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 9e-85 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-68 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 8e-83 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-63 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 7e-82 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 9e-63 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 3e-76 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-57 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 4e-76 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 2e-57 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 9e-64 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 2e-59 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 2e-55 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 2e-38 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 9e-48 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-43 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 2e-47 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 5e-43 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-41 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-37 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 3e-37 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 2e-29 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 3e-37 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 2e-29 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-37 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 2e-29 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 2e-36 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-28 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 2e-34 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 2e-31 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 3e-34 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 3e-31 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 3e-30 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-26 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-30 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 2e-26 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-30 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 2e-26 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 4e-30 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-26 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 5e-26 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 2e-22 | ||
| 3lof_A | 113 | C-Terminal Domain Of Human Heat Shock 70kda Protein | 7e-26 | ||
| 1ud0_A | 113 | Crystal Structure Of The C-Terminal 10-Kda Subdomai | 2e-25 | ||
| 2lmg_A | 75 | Solution Structure Of The C-Terminal Domain (537-61 | 2e-25 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-24 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-24 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-24 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-24 | ||
| 2p32_A | 120 | Crystal Structure Of The C-Terminal 10 Kda Subdomai | 1e-23 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 1e-17 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 2e-14 |
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b. Length = 113 | Back alignment and structure |
|
| >pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of Hsc70 Length = 113 | Back alignment and structure |
|
| >pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of Human Heat Shock Protein 70 Length = 75 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain From C. Elegans Hsp70 Length = 120 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1023 | |||
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 1e-169 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 1e-170 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 1e-152 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 1e-150 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 1e-110 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 1e-104 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 1e-109 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 1e-104 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-107 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-102 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 1e-106 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 1e-76 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-90 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-78 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 7e-88 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-83 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 9e-85 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 4e-74 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 2e-78 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 1e-74 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 7e-68 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 7e-68 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 3e-48 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 1e-08 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 2e-43 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 4e-42 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 3e-23 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 1e-12 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 2e-21 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 6e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 1e-11 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 7e-10 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 8e-11 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 1e-07 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 3e-10 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 7e-07 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 6e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 6e-06 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 2e-05 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 2e-04 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 2e-04 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 2e-04 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 2e-04 |
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 900 bits (2328), Expect = 0.0
Identities = 365/418 (87%), Positives = 391/418 (93%), Gaps = 9/418 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTIAGLNVLRIINEPTAAAIAYGLDKK ERNVL
Sbjct: 146 VPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK---------VGAERNVL 196
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+KKD++ N
Sbjct: 197 IFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISEN 256
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLFRGT++P
Sbjct: 257 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDP 316
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 376
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
AAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQP
Sbjct: 377 AAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQP 436
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
GVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTG
Sbjct: 437 GVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTG 496
Query: 482 KENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
KENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLESY FNMK+TVE
Sbjct: 497 KENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 797 bits (2060), Expect = 0.0
Identities = 326/389 (83%), Positives = 348/389 (89%), Gaps = 26/389 (6%)
Query: 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRK 690
ERNVLIFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK
Sbjct: 189 VGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248
Query: 691 YKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNAD 750
+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNAD
Sbjct: 249 HKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD 308
Query: 751 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 810
LFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEA
Sbjct: 309 LFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEA 368
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
VAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTF
Sbjct: 369 VAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTF 428
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNV 930
TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGI
Sbjct: 429 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI--- 485
Query: 931 TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDA 990
LNV+A++KSTGKENKITITND+GRLSKEDIERMV +A
Sbjct: 486 -----------------------LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEA 522
Query: 991 EKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
EKYKAEDEKQ+ +S+KNSLESY FNMK+
Sbjct: 523 EKYKAEDEKQRDKVSSKNSLESYAFNMKA 551
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 850 bits (2198), Expect = 0.0
Identities = 136/515 (26%), Positives = 232/515 (45%), Gaps = 28/515 (5%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+P ++ + D+ IAGLN +RI+N+ TAA ++YG+ K E R V
Sbjct: 145 VPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEE----KPRIVA 200
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
D+G ++ SI+ + G +V TA D H GG DFD + HF EFK KYK D+ N
Sbjct: 201 FVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIREN 260
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
+A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL L EP
Sbjct: 261 PKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 320
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
V K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GAA
Sbjct: 321 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFI 379
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPTKQTQTFTTYS 417
AI V+ D+ P S+ V + ++ P+ + T
Sbjct: 380 CAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTG 437
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPAPRGVPQIEVTFDIDANGILNV-- 473
D T + + +E+T + P VP +++ D +G+ +
Sbjct: 438 DFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VKLKLRCDPSGLHTIEE 494
Query: 474 --------TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKN 525
+ T K++ +TI L + + ++ + A+D+ KN
Sbjct: 495 AYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKN 554
Query: 526 SLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL-DANQLAEKEEFEHKQKEL 584
+LE Y + ++ +E+E SDAE+T++ N +WL D + K ++ K +EL
Sbjct: 555 TLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEEL 613
Query: 585 EAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGA 619
++ N I + A + A
Sbjct: 614 ASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMA 648
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 679 bits (1753), Expect = 0.0
Identities = 103/398 (25%), Positives = 174/398 (43%), Gaps = 28/398 (7%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
E R V D+G ++ SI+ + G +V TA D H GG DFD + HF EFK
Sbjct: 191 EGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFK 250
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ VD + ++R EEL
Sbjct: 251 TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELV 310
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
L EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N D
Sbjct: 311 KPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQD 369
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPT 864
EA+A GAA AI V+ D+ P S+ V + ++ P+
Sbjct: 370 EAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPS 427
Query: 865 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPAPRGVPQIEVTFDI 922
+ T D T + + +E+T + P VP +++
Sbjct: 428 TKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VKLKLRC 484
Query: 923 DANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKED 982
D +G+ + E + T K++ +TI L +
Sbjct: 485 DPSGLHTIEEAYTIEDIE----------------AGSDTKTVKKDDLTIVAHTFGLDAKK 528
Query: 983 IERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
+ ++ + A+D+ KN+LE Y + ++ K
Sbjct: 529 LNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGK 566
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 616 bits (1592), Expect = 0.0
Identities = 239/540 (44%), Positives = 331/540 (61%), Gaps = 50/540 (9%)
Query: 73 TPWDGARLKAVSAQELSRGVKAIFTAPDILKK--KTSEDIL-RKVDGQNEGLI--PAYFN 127
W + + ++ ++S A +LKK KT+ED L V E +I PAYFN
Sbjct: 100 DAWVEVKGQKMAPPQIS----AE-----VLKKMKKTAEDYLGEPV---TEAVITVPAYFN 147
Query: 128 ISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGG 187
+ ++TKD+G IAGL V RIINEPTAAA+AYGLDK +G R + ++DLGG
Sbjct: 148 DAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG----------TGNRTIAVYDLGG 197
Query: 188 GTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKR 243
GTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK+ DL +
Sbjct: 198 GTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPL 257
Query: 244 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLFRG 297
A++RL+ A E+AK LSS+ Q +++ + D +TRA+ E L DL
Sbjct: 258 AMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
++EP++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA G
Sbjct: 316 SIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIG 374
Query: 358 AAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 417
AAVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T
Sbjct: 375 AAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 430
Query: 418 DNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIE 477
DNQ V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +
Sbjct: 431 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 490
Query: 478 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKST 537
K++GKE KITI G L++++I++MV DAE D K ++ +N + + +
Sbjct: 491 KNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQ 549
Query: 538 VEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597
VE+ DK+ ++T I + L +K E K +EL + ++ Q
Sbjct: 550 VEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 508 bits (1310), Expect = e-169
Identities = 183/398 (45%), Positives = 252/398 (63%), Gaps = 44/398 (11%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHF 683
+++G+G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 684 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYT 737
V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI 298
Query: 738 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
+TRA+ E L DL ++EP++ +L+DA + + I D++LVGG TR+P VQK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 798 GKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIK 857
GKE K +NPDEAVA GAAVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 858 RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIE 917
+NTTIPTK +Q F+T DNQ V I V +GER DN LG+F L I PAPRG+PQIE
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 918 VTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGR 977
VTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSG--------------------------- 506
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCF 1015
L++++I++MV DAE D K ++ +N +
Sbjct: 507 LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLH 544
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 593 bits (1530), Expect = 0.0
Identities = 223/432 (51%), Positives = 298/432 (68%), Gaps = 27/432 (6%)
Query: 104 KKTSEDIL-RKVDGQNEGLI--PAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160
K +ED L V +I PAYFN + ++TKD+G IAGL V RIINEPTAAA+AYG
Sbjct: 98 KSYAEDYLGEPV---TRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYG 154
Query: 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220
LDK+ ++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLGG+DFD
Sbjct: 155 LDKE-----------EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQ 203
Query: 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-V 276
++++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I I + G +
Sbjct: 204 VIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPL 263
Query: 277 DFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 336
++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++
Sbjct: 264 HLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIK 323
Query: 337 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMT 396
GKE +K +NPDE VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV T
Sbjct: 324 REL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFT 378
Query: 397 ALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456
LI+RNTTIPT ++Q FTT +DNQ V I V +GER M DN LG+F+LT IPPAPRGV
Sbjct: 379 KLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGV 438
Query: 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEK 516
PQIEVTFDIDANGI++V A + T KE ITI + G LS+E+I+RM+ +AE+ D K
Sbjct: 439 PQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRK 497
Query: 517 QKAVISAKNSLE 528
+K +N +
Sbjct: 498 RKEAAELRNEAD 509
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 508 bits (1310), Expect = e-170
Identities = 187/383 (48%), Positives = 254/383 (66%), Gaps = 36/383 (9%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLGG+DFD ++++ V +FK+++
Sbjct: 159 EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHG 218
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLFEG-VDFYTSITRARFEELN 748
DL+ +K AL+RL+ A E+AK+ LS TQ I I + G + ++TRA+FEEL+
Sbjct: 219 IDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELS 278
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
A L TM PV ++L+DA + A I ++LVGGSTRIP VQ+ ++ GKE +K +NPD
Sbjct: 279 AHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPD 337
Query: 809 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868
E VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV T LI+RNTTIPT ++Q
Sbjct: 338 EVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQ 393
Query: 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGIL 928
FTT +DNQ V I V +GER M DN LG+F+LT IPPAPRGVPQIEVTFDIDANGI+
Sbjct: 394 VFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIV 453
Query: 929 NVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988
+V A + T KE ITI + G LS+E+I+RM+
Sbjct: 454 HVRAKDLGTNKEQSITIKSSSG---------------------------LSEEEIQRMIK 486
Query: 989 DAEKYKAEDEKQKAVISAKNSLE 1011
+AE+ D K+K +N +
Sbjct: 487 EAEENAEADRKRKEAAELRNEAD 509
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 541 bits (1396), Expect = 0.0
Identities = 209/247 (84%), Positives = 226/247 (91%), Gaps = 7/247 (2%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
+PAYFN S ++TKD+GTI GLNVLRIINEPTAAAIAYGLDKK + GE+NVL
Sbjct: 165 VPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCA-------GGEKNVL 217
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EFKRK+KKD+ N
Sbjct: 218 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPN 277
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
KRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEELNADLFRGT+EP
Sbjct: 278 KRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEP 337
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
VEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGAAVQ
Sbjct: 338 VEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 397
Query: 362 AAILHGD 368
AAIL GD
Sbjct: 398 AAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 456 bits (1176), Expect = e-152
Identities = 174/197 (88%), Positives = 186/197 (94%)
Query: 629 EEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV+H +EFK
Sbjct: 208 GCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELN 748
RK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGVDFYTSITRARFEELN
Sbjct: 268 RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELN 327
Query: 749 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 808
ADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPD
Sbjct: 328 ADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 387
Query: 809 EAVAYGAAVQAAILHGD 825
EAVAYGAAVQAAIL GD
Sbjct: 388 EAVAYGAAVQAAILIGD 404
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-110
Identities = 105/149 (70%), Positives = 129/149 (86%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LG FEL+ IPPAPRGVPQIEVTF+IDANGILNV+A +KSTGK N+ITI N++GRL++ D
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
I+RMV++A++++ ED +Q+ + A+N LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-104
Identities = 105/175 (60%), Positives = 129/175 (73%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LG FEL+ IPPAPRGVPQIEVTF+IDANGI LNV
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGI--------------------------LNV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +KSTGK N+ITI N++GRL++ DI+RMV++A++++ ED +Q+ + A+N LE
Sbjct: 98 SAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 334 bits (860), Expect = e-109
Identities = 103/149 (69%), Positives = 124/149 (83%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LLGKFELT IPPAPRGVPQIEVTF +DANGIL V+A +K TGK ITITND+GRL++E+
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
I+RMV +AEK+ +ED KA + ++N LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-104
Identities = 103/175 (58%), Positives = 124/175 (70%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LLGKFELT IPPAPRGVPQIEVTF +DANGI L V
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGI--------------------------LKV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +K TGK ITITND+GRL++E+I+RMV +AEK+ +ED KA + ++N LE
Sbjct: 98 SATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-107
Identities = 95/149 (63%), Positives = 119/149 (79%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LG F++T IPPAPRGVPQIEVTF+ID NGIL+V+A +K TG +NK+TITND RLS ED
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
IERM+NDA+K+ A+D+ QK + ++N LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 315 bits (809), Expect = e-102
Identities = 95/175 (54%), Positives = 119/175 (68%), Gaps = 26/175 (14%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LG F++T IPPAPRGVPQIEVTF+ID NGI L+V
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGI--------------------------LHV 97
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
+A +K TG +NK+TITND RLS EDIERM+NDA+K+ A+D+ QK + ++N LE
Sbjct: 98 SAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-106
Identities = 134/308 (43%), Positives = 190/308 (61%), Gaps = 40/308 (12%)
Query: 73 TPWDGARLKAVSAQELSRGVKAIFTAPDILKK--KTSEDIL-RKVDGQNEGLI--PAYFN 127
W + + ++ ++S A +LKK KT+ED L V E +I PAYFN
Sbjct: 100 DAWVEVKGQKMAPPQIS----AE-----VLKKMKKTAEDYLGEPV---TEAVITVPAYFN 147
Query: 128 ISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGG 187
+ ++TKD+G IAGL V RIINEPTAAA+AYGLDK +G R + ++DLGG
Sbjct: 148 DAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG----------TGNRTIAVYDLGG 197
Query: 188 GTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKR 243
GTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK+ DL +
Sbjct: 198 GTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPL 257
Query: 244 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYTSITRARFEELNADLFRG 297
A++RL+ A E+AK LSS+ Q +++ + D +TRA+ E L DL
Sbjct: 258 AMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315
Query: 298 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 357
++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA G
Sbjct: 316 SIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIG 374
Query: 358 AAVQAAIL 365
AAVQ +L
Sbjct: 375 AAVQGGVL 382
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 1e-76
Identities = 91/205 (44%), Positives = 136/205 (66%), Gaps = 13/205 (6%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHF 683
+++G+G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 684 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD------FYT 737
V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++ + D
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI 298
Query: 738 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
+TRA+ E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 798 GKELNKSINPDEAVAYGAAVQAAIL 822
GKE K +NPDEAVA GAAVQ +L
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVL 382
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 1e-90
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 6/225 (2%)
Query: 376 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 435
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 436 KDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRL 495
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 496 SKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQI 555
++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T I
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAI 177
Query: 556 LDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSG 600
+ L +K E K +EL + ++ Q
Sbjct: 178 ESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 1e-78
Identities = 87/180 (48%), Positives = 111/180 (61%), Gaps = 27/180 (15%)
Query: 833 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 892
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 893 KDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-- 118
Query: 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLES 1012
L++++I++MV DAE D K + ++ +N +
Sbjct: 119 -------------------------LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDH 153
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 7e-88
Identities = 95/179 (53%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
Query: 361 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 420
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 421 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 480
V I+V +GER M DN LLG+F L IPPAPRGVPQIEVTFDIDANGI++V+A +K T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 481 GKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVE 539
G+E +I I + G LSK+DIE MV +AEKY ED ++K + A N E + ++ +E
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 1e-83
Identities = 94/198 (47%), Positives = 115/198 (58%), Gaps = 31/198 (15%)
Query: 818 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 877
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 878 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKST 937
V I+V +GER M DN LLG+F L IPPAPRGVPQIEVTFDIDANGI++V+A +K T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 938 GKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAED 997
G+E +I I + G LSK+DIE MV +AEKY ED
Sbjct: 125 GREQQIVIQSSGG---------------------------LSKDDIENMVKNAEKYAEED 157
Query: 998 EKQKAVISAKNSLESYCF 1015
++K + A N E
Sbjct: 158 RRKKERVEAVNMAEGIIH 175
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 9e-85
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 6/221 (2%)
Query: 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 438
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 439 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKE 498
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G L+
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDS 119
Query: 499 DIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDK 558
+I M+ D+ Y +D K + + K ++ + +S AER I D
Sbjct: 120 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDA 177
Query: 559 CNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599
+ + + + + E K ++ + S
Sbjct: 178 AAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 215
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 4e-74
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 27/177 (15%)
Query: 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 895
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 896 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLN 955
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I +
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKP-------- 112
Query: 956 VTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLES 1012
S G L+ +I M+ D+ Y +D K + + K
Sbjct: 113 ------SYG-------------LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAAR 150
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 2e-78
Identities = 90/149 (60%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 380 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 439
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 440 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKED 499
LLG+F L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G LSK+
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 500 IERMVNDAEKYKAEDEKQKAVISAKNSLE 528
IE M+ +AEK AED K+K ++ N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 1e-74
Identities = 90/175 (51%), Positives = 112/175 (64%), Gaps = 27/175 (15%)
Query: 837 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 896
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 897 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNV 956
LLG+F L IPPAPRGVPQ+EVTFDIDANGI+NV+A ++ TGKE +I I + G
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG------ 117
Query: 957 TAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011
LSK+ IE M+ +AEK AED K+K ++ N E
Sbjct: 118 ---------------------LSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 7e-68
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 421
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 422 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 481
V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++G
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 482 KENKITITNDRG 493
KE KITI G
Sbjct: 123 KEQKITIKASSG 134
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 7e-68
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 819 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 878
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 879 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTG 938
V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++G
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 939 KENKITITNDRG 950
KE KITI G
Sbjct: 123 KEQKITIKASSG 134
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 3e-48
Identities = 64/124 (51%), Positives = 82/124 (66%), Gaps = 8/124 (6%)
Query: 507 AEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWL 566
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 567 DANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGP 626
D+NQ AEKEEFEH+QK+LE + NPII+KLYQ +GGAP GA P GA G GP
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPP--------GAAPGGAAGGAGGP 114
Query: 627 TIEE 630
TIEE
Sbjct: 115 TIEE 118
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 990 AEKYKAEDEKQKAVISAKNSLESYCFNMKSK 1020
+ + + LESY FN+K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQT 33
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-43
Identities = 71/111 (63%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 520 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEH 579
V + LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 580 KQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEE 630
+QKELE +CNPIITKLYQ +GG PGG PG G P GA GPTIEE
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSG-GASSGPTIEE 111
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 4e-42
Identities = 70/115 (60%), Positives = 84/115 (73%), Gaps = 6/115 (5%)
Query: 516 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKE 575
+SAKN+LESY FNMKS VEDE LK KIS+A++ ++LDKC +VI WLDAN LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 576 EFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEE 630
EFEHK+KELE +CNPII+ LYQG+GG G GA G G+G GPTIEE
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK------GGSGSGPTIEE 111
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 67/241 (27%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVL 181
IP + ++ AGL ++ +++EP AAA A G++ +
Sbjct: 99 IPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDGI---------------- 142
Query: 182 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241
+ D+GGGT ++++ D GG + + F
Sbjct: 143 VVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAGSYKIPF----------- 186
Query: 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301
A E K+ S + + R +E
Sbjct: 187 -------EEA-ETIKKDFSRHREIMRVV--------------------------RPVIEK 212
Query: 302 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361
+ +++ + Q + +VGG+ + + F GKE+ I+P G A+
Sbjct: 213 MALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALF 271
Query: 362 A 362
Sbjct: 272 G 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 57/198 (28%)
Query: 628 IEE------GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVN 681
++E G + ++ D+GGGT ++++ D GG +
Sbjct: 126 VDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAG 180
Query: 682 HFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITR 741
+ F A E K+ S + +
Sbjct: 181 SYKIPF------------------EEA-ETIKKDFSRHREIMRVV--------------- 206
Query: 742 ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 801
R +E + +++ + Q + +VGG+ + + F GKE+
Sbjct: 207 -----------RPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEV 254
Query: 802 NKSINPDEAVAYGAAVQA 819
I+P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 95.7 bits (237), Expect = 2e-21
Identities = 29/257 (11%), Positives = 76/257 (29%), Gaps = 44/257 (17%)
Query: 108 EDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 167
+ + + N I K T + G + ++++ E A +
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD--- 161
Query: 168 TAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 227
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 162 --------ELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALS 211
Query: 228 QEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF 287
+ ++ A + + + + I I
Sbjct: 212 LARTK------GSSYLADDIIIHRKDNNYLKQRINDENKISI------------------ 247
Query: 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELN 345
+ + +E+ + + + + ++++GG + + ++ +
Sbjct: 248 ---VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFF 302
Query: 346 KSINPDEAVAYGAAVQA 362
K+ N + G +
Sbjct: 303 KTNNSQYDLVNGMYLIG 319
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 6e-14
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
++E ++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 157 LQELDELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 214
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+ ++ A + + + + I I
Sbjct: 215 TK------GSSYLADDIIIHRKDNNYLKQRINDENKISI--------------------- 247
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI 805
+ + +E+ + + + + ++++GG + + ++ + K+
Sbjct: 248 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTN 305
Query: 806 NPDEAVAYGAAVQA 819
N + G +
Sbjct: 306 NSQYDLVNGMYLIG 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 5e-14
Identities = 107/776 (13%), Positives = 200/776 (25%), Gaps = 269/776 (34%)
Query: 108 EDILRKVDGQNEGLIPAYFNISSVKSTKDS--GTIAGLNVLRIINEPTAAAIAYGL---- 161
+DIL A+ + K +D ++ + II A + L
Sbjct: 19 KDIL-------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 162 -DKKVGSTAVEY--NGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 218
K V+ N + F +S + E + + T + +
Sbjct: 72 LSK--QEEMVQKFVEEVLRIN---YK-----FLMSPIKTEQ-----RQPSMMTRMY-IEQ 115
Query: 219 DNRMVNHFVQEFKRKY----KKDLTTNKRALRRLRTA----------CERAKRTLSSSTQ 264
+R+ N Q F KY + ++AL LR A K ++
Sbjct: 116 RDRLYND-NQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVALDVC 171
Query: 265 ASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG 324
S ++ + F+ ++ E +E ++K L + D
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPET-------VLEMLQKLLYQIDPNWTSRSD-----H 219
Query: 325 STRIP----KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLD 380
S+ I +Q L+ K + +L VQ+ +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL--------------LVL--L---NVQNAKAWN 260
Query: 381 VTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN-- 438
+L + L+ TT + + T + I + +T D
Sbjct: 261 A--FNLSCKI-------LL---TT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 439 NLLGKF---ELTSIPP-APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGR 494
+LL K+ +P P ++ I +S ++ T N +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNP-------------RRLSIIAESI-RDGLATWDNWK-H 349
Query: 495 LSKEDIERMVNDAEKYKAEDEKQK-----AV------ISAKNSLESYCFNMKSTVEDE-- 541
++ + + ++ + E +K +V I L F++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVV 408
Query: 542 -KLKDKISDAERTQILDKCNDVIK----WLDANQLAEKEEFEHKQKELEAICNPIITKLY 596
KL S E+ I +L+ E E H+ I+ Y
Sbjct: 409 NKLHKY-SLVEK----QPKESTISIPSIYLELKVKLENEYALHRS---------IVDH-Y 453
Query: 597 QGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIED 656
P F PP D
Sbjct: 454 N----IPKTFD--SDDLIPPY-------------------------------------LD 470
Query: 657 G-IFEVKSTAGDTHLG--------GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 707
+ H+G E F+ + D ++ +R T
Sbjct: 471 QYFYS--------HIGHHLKNIEHPERMT---------LFRMVFL-DFRFLEQKIRHDST 512
Query: 708 ACERAKRTLSSSTQASIEIDSLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLR 764
A AS I + + + FY I ++E L + + E +
Sbjct: 513 AW-----------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 765 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 820
T + ++ L DEA+ A Q
Sbjct: 562 SK---------------YTDL--LRIALM------------AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 4e-10
Identities = 82/560 (14%), Positives = 153/560 (27%), Gaps = 173/560 (30%)
Query: 533 NMKSTVEDEKLKDKISDAERTQILD-KCNDVIKWLDANQLAEKEEFEH--KQKELEAICN 589
+ ++ + KD +S E + + C DV + KEE +H K+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDAVSGTL 65
Query: 590 PIITKLYQGSGGAPGGFPGAPGAGAPPSGAPGAGPGPTIEEGSGERNVLIFDLGGGTFDV 649
+ L E V F +
Sbjct: 66 RLFWTL----------------------------------LSKQEEMVQKFVEEVLRINY 91
Query: 650 SILTIEDGI-FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY----KKDLTTNKRALRR 704
L I E + + T + + +R+ N Q F KY + ++AL
Sbjct: 92 KFLM--SPIKTEQRQPSMMTRMY-IEQRDRLYND-NQVF-AKYNVSRLQPYLKLRQALLE 146
Query: 705 LRTA----------CERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG 754
LR A K ++ S ++ + F+ ++ E
Sbjct: 147 LRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET------- 197
Query: 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP----KVQKLLQDFFNGKELNKSINPDEA 810
+E ++K L + D S+ I +Q L+ K +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKPYENCL----- 247
Query: 811 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTF 870
+L VQ+ + +L + L+ TT + +
Sbjct: 248 ---------LVL--L---NVQNAKAWNA--FNLSCKI-------LL---TT----RFKQV 277
Query: 871 TTYSDNQPGVLIQVYEGERAMTKDN--NLLGKF---ELTSIPP-----APRGVPQIEVTF 920
T + I + +T D +LL K+ +P PR + I +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 921 DIDANGILNV---------TAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITI 971
N T IE S N + R + + ++ S I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYR-KMFDRLSVFPPSA----HIPT 389
Query: 972 T------NDRGRLSKEDIERMVNDAEKY-----------------------KAEDEKQ-- 1000
D + K D+ +VN KY K E+E
Sbjct: 390 ILLSLIWFD---VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1001 KAVISAKNSLESYCFNMKSK 1020
++++ N +++ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIP 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 84/605 (13%), Positives = 161/605 (26%), Gaps = 188/605 (31%)
Query: 415 TYSDNQPGVLIQVYEGERAMTKD----------NNLLGKFELTSIPPAPRGVPQIEVTFD 464
Y D ++ V+E A + ++L K E+ I + V F
Sbjct: 17 QYKD-----ILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 465 I----DANGI---------LNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 511
+ +N + E + R + + D R+ ND + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFA 127
Query: 512 AED-EKQKAVISAKNSL-----ESYCF--NM----KSTVEDEKLKDKISDAERTQILDKC 559
+ + + + + +L + K+ V + ++ K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKM 180
Query: 560 NDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGAPGGFPGAPGAGAPPSGA 619
+ I WL+ L E + L+ + I S +
Sbjct: 181 DFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----------NIKLRI 227
Query: 620 PGAGPGPT--IEEGSGERNVLIFD-------LGGGTFDVS----ILTIEDGIFEVKSTAG 666
++ E +L+ F++S + T + + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 667 DTHLGGEDFDNRMVNHFVQEFKRKY----KKDL-----TTNKRAL----RRLR------- 706
TH+ + + V+ KY +DL TTN R L +R
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 707 ----TACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR--------- 753
C++ + SS ++ L + R F+ L+ +F
Sbjct: 346 NWKHVNCDKLTTIIESS------LNVL------EPAEYRKMFDRLS--VFPPSAHIPTIL 391
Query: 754 -----GTMEPVE----------KSL--RDAKMDKAQIHDI--VLVGGSTRIPKVQKLLQD 794
+ + SL + K I I L + + + D
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 795 FFNGKE--LNKSINPDEA-------VAYGAAVQAAILHGDKSEEVQDL-----LLLDVTP 840
+N + + + P + + H E + + + LD
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGH---------HLKNIEHPERMTLFRMVFLDFRF 502
Query: 841 LSLGIETAGGVMTALIKRNTTIPTKQTQTFTTY----SDNQPGVLIQVYEGERAMTKDNN 896
L I TA + + T Q Y DN P YE +
Sbjct: 503 LEQKIRHDS---TAWNASGSILNT--LQQLKFYKPYICDNDP-----KYE---RLVNA-- 547
Query: 897 LLGKF 901
+ F
Sbjct: 548 -ILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 54/404 (13%), Positives = 103/404 (25%), Gaps = 142/404 (35%)
Query: 19 LLIQT---SIMD-LIGDNLGQGLIKPAFSGIRLEEGAVMLYCSDGYTAGWINSITGDL-- 72
+L+ T + D L + + +E +L +++ DL
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LKYLDCRPQDLPR 320
Query: 73 -----TP----------------WDGARLKAVSAQELSRGVKAIFTA--PDILKK----- 104
P WD K V+ +L+ +++ P +K
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 105 -------KTSEDIL----RKVDGQNEGLIPAYF-NISSVKSTKDSGTIAGLNVLRIINEP 152
+L V + ++ S V+ TI + + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKV 437
Query: 153 TAAAIAYGLDKKVGSTAVE-YNGSGERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGD 210
L + + V+ YN + DL I D +
Sbjct: 438 KLENEYA-LHRSI----VDHYNI--PKTFDSDDL--------IPPYLDQYFYS------- 475
Query: 211 THLG--------GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 262
H+G E F+ + D ++ +R TA
Sbjct: 476 -HIGHHLKNIEHPERMT---------LFRMVFL-DFRFLEQKIRHDSTAW---------- 514
Query: 263 TQASIEIDSLFEGVDFYTS-ITR--ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDI 319
AS I + + + FY I ++E L + + E +
Sbjct: 515 -NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---------- 563
Query: 320 VLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 363
T + ++ L DEA+ A Q
Sbjct: 564 -----YTDL--LRIALM------------AEDEAIFEEAHKQVQ 588
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 44/232 (18%)
Query: 138 GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTI 197
+ I + + + + + +NV + D GG S+
Sbjct: 142 DKEYSFEITDITIKAEGSGVLFLEQENFK----------NKNVAVIDFGGLNMGFSLY-- 189
Query: 198 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 257
S G +D R+ + +L TN++A L +
Sbjct: 190 -RNCVVNPSERFIEEHGVKDLIIRVGD----ALTDLNNGNLITNEQAESALNNGYMKKGG 244
Query: 258 TLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH 317
+ + + I+ + ++ K + Q+
Sbjct: 245 EIDTESSTVIK------------------------KVKEKFLKDAIKLIEKRGFKLDQLD 280
Query: 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDK 369
++ +GG+T+ +++ + + + N G A + +
Sbjct: 281 SLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCEGLYKVAVAKYCIQ 329
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 7e-10
Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 34/206 (16%)
Query: 621 GAGPGPTIEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 680
G+G +E +NV + D GG S+ S G +D R+
Sbjct: 158 GSGVLFLEQENFKNKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVG 214
Query: 681 NHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSIT 740
+ +L TN++A L + + + + I+
Sbjct: 215 D----ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIK--------------- 255
Query: 741 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 800
+ ++ K + Q+ ++ +GG+T+ +++ + +
Sbjct: 256 ---------KVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNN 303
Query: 801 LNKSINPDEAVAYGAAVQAAILHGDK 826
+ N G A + +
Sbjct: 304 SIITNNSQWTTCEGLYKVAVAKYCIQ 329
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 8e-11
Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 42/235 (17%)
Query: 125 YFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFD 184
+ T G + N+ R+I P A L + ++ D
Sbjct: 143 ALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQ------GIIEQQPGYGVVID 196
Query: 185 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRA 244
+G T DV + + D V + +G D + + +E DL
Sbjct: 197 VGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL------ 249
Query: 245 LRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF-YTSITRARFEELNADLFRGTMEPVE 303
Q ++ +F ++ E+L + +E +
Sbjct: 250 ------------------AQEALSHPVMFRQKQVGGPEVSGPILEDLANRI----IENIR 287
Query: 304 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVAYG 357
+LR + ++ VGG + + + ++ G + + A A G
Sbjct: 288 LNLRGEVDR---VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 1e-07
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 36/183 (19%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++ D+G T DV + + D V + +G D + + +E
Sbjct: 189 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 247
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDF-YTSITRARFEELNADLF 752
DL Q ++ +F ++ E+L +
Sbjct: 248 DL------------------------AQEALSHPVMFRQKQVGGPEVSGPILEDLANRI- 282
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAV 811
+E + +LR + ++ VGG + + + ++ G + + A
Sbjct: 283 ---IENIRLNLRGEVDR---VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFAN 334
Query: 812 AYG 814
A G
Sbjct: 335 ALG 337
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 3e-10
Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 39/226 (17%)
Query: 147 RIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 206
+I+ +P + ++ A E + D G GT + + V+
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFT-----EGKYSVLDFGSGTTIIDTY---QNMKRVEE 209
Query: 207 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQAS 266
+ + G DF R+ + +K + T + + L + + +
Sbjct: 210 ESFVINKGTIDFYKRIAS----HVSKKSEGASITPRMIEKGLEY------KQCKLNQKTV 259
Query: 267 IEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 326
I+ + F + L M E ++ + I I++ GG
Sbjct: 260 IDF--------------KDEFYKEQDSLIEEVMSNFEITVGNI----NSIDRIIVTGGGA 301
Query: 327 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEE 372
I L ++ K+ + + G +L +E
Sbjct: 302 NI--HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 34/196 (17%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
E + D G GT + + V+ + + G DF R+ + +K +
Sbjct: 183 EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFVINKGTIDFYKRIAS----HVSKKSEG 235
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
T + + L + + + I+ + F + L
Sbjct: 236 ASITPRMIEKGLEY------KQCKLNQKTVIDF--------------KDEFYKEQDSLIE 275
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 813
M E ++ + I I++ GG I L ++ K+ + +
Sbjct: 276 EVMSNFEITVGNI----NSIDRIIVTGGGANI--HFDSLSHYY-SDVFEKADDSQFSNVR 328
Query: 814 GAAVQAAILHGDKSEE 829
G +L +E
Sbjct: 329 GYEKLGELLKNKVEQE 344
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 292 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 348 INPDEAVAYGAAVQAAILHGDKSEE 372
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 749 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 805 INPDEAVAYGAAVQAAILHGDKSEE 829
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 35/214 (16%)
Query: 129 SSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGG 188
+V ++ AGL + + +P A +R L+ D+G
Sbjct: 151 EAVAGVLEALRGAGLVPVVLDVKPFAGLYPL---------EARLAEEPDRVFLVLDIGAE 201
Query: 189 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL 248
+ + +L L G+DF + F +
Sbjct: 202 STSLVLL--RGDKPLA---VRVLTLSGKDFTEAIARSFNLDLLA---------------- 240
Query: 249 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLR- 307
E KRT +T + + + L + + R + + + + +SL
Sbjct: 241 ---AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEF 297
Query: 308 -DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
++++A L+GG +++ + LL D
Sbjct: 298 FRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 292 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 348 INPDEAVAYGAAVQAAI 364
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 749 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 805 INPDEAVAYGAAVQAAI 821
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 292 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 349
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 350 PDEAVAYGAAVQAAI 364
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 749 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 806
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 807 PDEAVAYGAAVQAAI 821
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1023 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.97 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.97 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.97 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 99.96 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 99.96 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 99.96 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.95 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.95 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.95 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.95 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.95 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.95 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 99.95 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.94 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.93 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.93 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.9 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.89 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.89 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.85 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.85 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.82 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 99.82 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.81 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.8 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.7 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.62 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.53 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.51 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.5 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.47 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.46 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.45 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.4 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.33 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.32 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.28 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.27 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.22 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.17 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.13 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.12 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.03 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.0 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 98.94 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 98.86 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 98.83 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 98.72 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.67 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.65 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.31 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.85 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 97.71 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.66 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 97.28 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 97.25 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 96.72 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.71 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.52 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 96.42 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 95.86 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.45 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.22 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.17 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 95.03 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 94.94 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 94.9 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 94.74 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 94.7 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 94.41 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 94.32 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 94.27 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 94.2 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 94.18 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 94.08 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 94.08 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 94.03 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 94.0 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 93.89 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 93.88 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 93.71 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 93.71 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 93.68 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 93.39 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 93.29 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 93.27 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 92.63 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 92.57 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 92.52 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 92.44 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 92.24 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 92.06 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 91.99 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 91.95 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 91.93 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 91.72 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 91.1 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 91.04 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 89.46 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 88.48 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 85.49 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 84.88 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 84.78 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 81.31 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 80.68 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-85 Score=790.44 Aligned_cols=550 Identities=44% Similarity=0.681 Sum_probs=504.4
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ +.|.+|.+.+||++.+. .++.+++| ..|..++.+||+++|..
T Consensus 16 Va~~~~g~~~i-i~n~~g~~~~PS~V~~~------------------~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 76 (605)
T 4b9q_A 16 VAIMDGTTPRV-LENAEGDRTTPSIIAYT------------------QDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRR 76 (605)
T ss_dssp EEEEETTEEEE-CCCTTSCSSEECCEEEC------------------TTSCEEESHHHHHTTTTCGGGEECCGGGTTTCB
T ss_pred EEEEECCEEEE-EECCCCCcccceEEEEe------------------CCCcEEecHHHHHHHHhCCCcEehhhHHhhCCC
Confidence 46777777777 77777766666666554 33444555 46778889999999985
Q ss_pred C-----------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 T-----------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~-----------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
. +.+...+..++|+++++++| ++|++.|+.++|.++.++|||||+||++.
T Consensus 77 ~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL-------~~lk~~ae~~lg~~v~~~VITVPa~f~~~ 149 (605)
T 4b9q_A 77 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL-------KKMKKTAEDYLGEPVTEAVITVPAYFNDA 149 (605)
T ss_dssp TTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHH-------HHHHHHHHHHHTSCCCEEEEEECTTCCHH
T ss_pred CCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHH
Confidence 1 11223456899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeC----CEEEEE
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIED----GIFEVK 205 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~----~~~~v~ 205 (1023)
||+++++||+.|||+++++++||+|||++|+..... .+.+++|||+||||||+|++++.+ +.++++
T Consensus 150 qr~a~~~Aa~~AGl~v~~li~EP~AAAlaygl~~~~----------~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evl 219 (605)
T 4b9q_A 150 QRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT----------GNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVL 219 (605)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHTTSCC----------SSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEeCcHHHHHHHhhhhccC----------CCCEEEEEECCCCeEEEEEEEEecCCCCceEEEE
Confidence 999999999999999999999999999999876541 468999999999999999999988 899999
Q ss_pred EecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCC----ceeEEE
Q psy6736 206 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG----VDFYTS 281 (1023)
Q Consensus 206 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~ 281 (1023)
++.|+.++||.+||++|++|+.++|..+++.+...+++++.+|+.+||++|+.||......+.++.+..+ .++.++
T Consensus 220 a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~ 299 (605)
T 4b9q_A 220 ATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299 (605)
T ss_dssp EEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEE
T ss_pred EecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998888765433 678899
Q ss_pred ecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 282 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 282 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
|||++|++++.|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++
T Consensus 300 itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~ 378 (605)
T 4b9q_A 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQ 378 (605)
T ss_dssp EEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 688888999999999999999
Q ss_pred HHHHhCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCcee
Q psy6736 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLL 441 (1023)
Q Consensus 362 a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l 441 (1023)
|+.+++. .+++.+.|++|++||+++.+|.|.+|||||+++|++++.+|++..|+|+.+.|++|||++..+.+|..|
T Consensus 379 a~~l~~~----~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~l 454 (605)
T 4b9q_A 379 GGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSL 454 (605)
T ss_dssp HHHHHTS----SCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEE
T ss_pred HHHhcCC----CCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEe
Confidence 9999873 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 442 GKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVI 521 (1023)
Q Consensus 442 g~~~i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~ 521 (1023)
|+|.+.++|++|+|.++|+|+|++|.||+|+|++.+..||++.+++|++. ..||++|+++++++++++..+|++.+++.
T Consensus 455 g~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~ 533 (605)
T 4b9q_A 455 GQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKCEELV 533 (605)
T ss_dssp EEEEEECCCCCSTTCCCEEEEEEECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCcCCCceEEEEEEEcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHHHHHHHHhhhhHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 47999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 522 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 522 ~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
++||+||+|+|++++.|++ +..++++++++++.+.++++++||+.+ +.++|++++++|++.+.|+..++++
T Consensus 534 ~~~n~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 534 QTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh--hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999974 778999999999999999999999976 5889999999999999999998864
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-84 Score=781.32 Aligned_cols=561 Identities=25% Similarity=0.370 Sum_probs=501.4
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|++|++.|||++.+..+ ...+| ..|..++.+||+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~r~tPS~Vaf~~~-------------------~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 75 (675)
T 3d2f_A 16 LAVARNRGIDI-VVNEVSNRSTPSVVGFGPK-------------------NRYLGETGKNKQTSNIKNTVANLKRIIGLD 75 (675)
T ss_dssp EEEEETTEEEE-ECCTTSCSSEECCEEECSS-------------------SEEETHHHHHHHTTCGGGEECCHHHHTTCB
T ss_pred EEEEECCeeEE-EECCCCCcccceEEEECCC-------------------cEEecHHHHHhhhhChHhHHHHHHHHhCCC
Confidence 56777777777 7787777777777766521 22345 45778889999999963
Q ss_pred C--ccc---------------c----------ccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCC
Q psy6736 73 T--PWD---------------G----------ARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAY 125 (1023)
Q Consensus 73 ~--~~~---------------~----------~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~ 125 (1023)
. +.+ + +....++|+++++++| ++|++.|+.++|.++.++|||||+|
T Consensus 76 ~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L-------~~lk~~ae~~lg~~v~~~VITVPa~ 148 (675)
T 3d2f_A 76 YHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI-------DKVKDTVKQDTKANITDVCIAVPPW 148 (675)
T ss_dssp TTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHH-------HHHHHHHHHHHCSCCCEEEEEECTT
T ss_pred CCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHH-------HHHHHHHHHHhCCCcceEEEEECCC
Confidence 2 100 0 1124689999999999 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEE
Q psy6736 126 FNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVK 205 (1023)
Q Consensus 126 ~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 205 (1023)
|++.||+++++|++.|||+++++++||+|||++|+..+.... .....+.++||||+||||||+|++++.++.++++
T Consensus 149 f~~~qR~a~~~Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~----~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~ 224 (675)
T 3d2f_A 149 YTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLP----EGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVL 224 (675)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCC----CSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEcchHHHHHHHhhhccccc----cccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEE
Confidence 999999999999999999999999999999999988653100 0002578999999999999999999999999999
Q ss_pred EecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHH
Q psy6736 206 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRA 285 (1023)
Q Consensus 206 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~ 285 (1023)
+++|+.++||.+||++|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++++.+|.++.++|||+
T Consensus 225 a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~ 304 (675)
T 3d2f_A 225 GTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSRE 304 (675)
T ss_dssp EEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHH
T ss_pred EEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHH
Confidence 99999999999999999999999999999999889999999999999999999999988899999888889999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 286 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 286 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+|++++.|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++|+.+
T Consensus 305 ~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~l 383 (675)
T 3d2f_A 305 ELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIH 383 (675)
T ss_dssp HHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 6778889999999999999999999
Q ss_pred hCCCCcceeeeEEeeeccccceEEecCc----eEEEEEecCCCCCCceEEEEEeccCCCCcEEEEE-eecCccccc-cCc
Q psy6736 366 HGDKSEEVQDLLLLDVTPLSLGIETAGG----VMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQV-YEGERAMTK-DNN 439 (1023)
Q Consensus 366 ~~~~~~~~~~~~~~d~~~~sigi~~~~~----~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i-~~g~~~~~~-~~~ 439 (1023)
++ .++++++.+.|++|++||+++.++ .+.+||+||+++|++++.+|++..++ .+.+ |+|++..+. +|.
T Consensus 384 s~--~~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~----~~~~~~~ge~~~~~~~n~ 457 (675)
T 3d2f_A 384 SP--TLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDF----SMAASYTDITQLPPNTPE 457 (675)
T ss_dssp CS--SCCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCE----EEEEEESCGGGSCTTCCS
T ss_pred CC--CCcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCc----eEEEEEcCCcccccccCc
Confidence 87 456789999999999999999877 49999999999999999999987554 3444 789998887 999
Q ss_pred eeeEEEecCCCCCCCCCC-eEEEEEEEcCCcceEEEEE----------eccCCcceeEEEecCCCCCcHHHHHHHHHHHH
Q psy6736 440 LLGKFELTSIPPAPRGVP-QIEVTFDIDANGILNVTAI----------EKSTGKENKITITNDRGRLSKEDIERMVNDAE 508 (1023)
Q Consensus 440 ~lg~~~i~~~~~~~~g~~-~i~v~f~~d~~g~l~v~~~----------~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~ 508 (1023)
.||+|.|.++|+.+.|.+ +|+|+|++|.||+|+|++. ++.||++..++|++...+||++++++++++++
T Consensus 458 ~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~ 537 (675)
T 3d2f_A 458 QIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKEN 537 (675)
T ss_dssp EEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHH
T ss_pred eeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999975 9999999999999999995 67889999999998766899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhC-CccCHHHHHHHHHHHHHH
Q psy6736 509 KYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDAN-QLAEKEEFEHKQKELEAI 587 (1023)
Q Consensus 509 ~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~-~~a~~~~~~~kl~~L~~~ 587 (1023)
++..+|+..+++.++||+||+|+|++|+.|++ .+..++++++++++.+.++++++||+++ .++++++|++|+++|+++
T Consensus 538 ~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~ 616 (675)
T 3d2f_A 538 EMLAQDKLVAETEDRKNTLEEYIYTLRGKLEE-EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASL 616 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 5888999999999999999999999876 478999999999999999
Q ss_pred HHHHHHHHHcccC
Q psy6736 588 CNPIITKLYQGSG 600 (1023)
Q Consensus 588 ~~pi~~r~~e~~g 600 (1023)
++||..|+.++..
T Consensus 617 ~~~i~~r~~e~~~ 629 (675)
T 3d2f_A 617 GNIIRGRYLAKEE 629 (675)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998664
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-84 Score=777.20 Aligned_cols=550 Identities=44% Similarity=0.673 Sum_probs=499.5
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|.+|.+.+||++.+. .++.+++| ..|..+..+||+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~~~~PS~V~~~------------------~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~ 76 (605)
T 2kho_A 16 VAIMDGTTPRV-LENAEGDRTTPSIIAYT------------------QDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRR 76 (605)
T ss_dssp EEEEETTEEEE-CCCTTSCSSEECEEEEC------------------TTSCEEESHHHHTTTTTCGGGEEECGGGTTTCB
T ss_pred EEEEECCEEEE-EECCCCCcccceEEEEE------------------CCCcEEECHHHHHHhhhCCCCEeehhhHhhCCC
Confidence 46666666666 66666666666665553 23344455 46778889999999963
Q ss_pred C----c---------c----------ccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 T----P---------W----------DGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~----~---------~----------~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
. + . +...+..++|+++++++| ++|++.|+.+++.++.++|||||+||++.
T Consensus 77 ~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L-------~~l~~~ae~~l~~~v~~~VitVPa~f~d~ 149 (605)
T 2kho_A 77 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL-------KKMKKTAEDYLGEPVTEAVITVPAYFNDA 149 (605)
T ss_dssp SSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHH-------HHHHHHHHHHHCSCCCEEEEEECTTCCHH
T ss_pred CCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHH-------HHHHHHHHHHhCCCCcEEEEEECCCCCHH
Confidence 1 0 0 001345789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEe----CCEEEEE
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVK 205 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~----~~~~~v~ 205 (1023)
||+++++|++.||++++++++||+|||++|+..... .+.++||||+||||||+|++++. ++.++++
T Consensus 150 qr~a~~~A~~~AGl~v~~li~EP~AAAlay~l~~~~----------~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~ 219 (605)
T 2kho_A 150 QRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT----------GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVL 219 (605)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTTTSSS----------SEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEecCHHHHHHHhhhcccC----------CCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEE
Confidence 999999999999999999999999999999876531 46789999999999999999998 7899999
Q ss_pred EecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC---C-ceeEEE
Q psy6736 206 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTS 281 (1023)
Q Consensus 206 ~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~ 281 (1023)
++.|+.++||.+||++|++|+.++|+++++.++..+++++.+|+.+||++|+.||...+..+.++++.+ | .++.++
T Consensus 220 a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~ 299 (605)
T 2kho_A 220 ATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299 (605)
T ss_dssp EEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEE
Confidence 999999999999999999999999999999888889999999999999999999999888888886654 2 567789
Q ss_pred ecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 282 ITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 282 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
|||++|+++++|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++
T Consensus 300 itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~ 378 (605)
T 2kho_A 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQ 378 (605)
T ss_dssp EEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 677888999999999999999
Q ss_pred HHHHhCCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCcee
Q psy6736 362 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLL 441 (1023)
Q Consensus 362 a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l 441 (1023)
|+.+++. ++++.+.|++|++||+++.+|.|.++|+||+++|++++.+|++..|+|+.+.|++|||++..+.+|..|
T Consensus 379 a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~l 454 (605)
T 2kho_A 379 GGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSL 454 (605)
T ss_dssp HTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEE
T ss_pred HHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEE
Confidence 9998863 578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 442 GKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVI 521 (1023)
Q Consensus 442 g~~~i~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~ 521 (1023)
|+|.+.++|+.|+|.++|+|+|++|.||+|+|++.+..||++.++++++. .+||++++++++++++++..+|+..+++.
T Consensus 455 g~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~ 533 (605)
T 2kho_A 455 GQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFDELV 533 (605)
T ss_dssp EEEEEECCCSCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCCCcEEEEEEEEcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 78999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 522 SAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 522 ~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
++||+||+|+|++++.|++ +..++++++++++.+.++++++||+.+ +.++|++++++|+++++|+..|++.
T Consensus 534 ~~~n~~e~~~~~~~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 534 QTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999975 788999999999999999999999954 7899999999999999999999864
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-77 Score=716.64 Aligned_cols=502 Identities=76% Similarity=1.049 Sum_probs=460.2
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|.++.|.+ |.|++|++.+||++.+..+ ..++| ..|..++.++|+++|..
T Consensus 18 va~~~~g~~~i-i~n~~g~~~~PS~V~~~~~-------------------~~~vG~~A~~~~~~~p~~ti~~~KrllG~~ 77 (554)
T 1yuw_A 18 VGVFQHGKVEI-IANDQGNRTTPSYVAFTDT-------------------ERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 77 (554)
T ss_dssp EEEECSSSEEE-CCCTTSCSEEECCEEECSS-------------------CEEETHHHHTTTTTCGGGEECCGGGTTTCC
T ss_pred EEEEECCEEEE-EECCCCCeecceEEEEcCC-------------------cEEEcHHHHHhhhhChhhehHhhHHhcCCC
Confidence 57788887777 8888887777777776521 22344 46778888999999863
Q ss_pred Cc--c----------------------c--cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCC
Q psy6736 73 TP--W----------------------D--GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYF 126 (1023)
Q Consensus 73 ~~--~----------------------~--~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~ 126 (1023)
.- . . ....+.++|+++++++| ++|++.|+.++|.++.++|||||++|
T Consensus 78 ~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L-------~~lk~~ae~~lg~~v~~~VitVPa~f 150 (554)
T 1yuw_A 78 FDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL-------TKMKEIAEAYLGKTVTNAVVTVPAYF 150 (554)
T ss_dssp SSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHH-------HHHHHHHHHHHSSCCCEEEEEECTTC
T ss_pred CCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCC
Confidence 10 0 0 11235789999999999 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEE
Q psy6736 127 NISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 206 (1023)
Q Consensus 127 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~ 206 (1023)
++.||+++++|++.||++++++++||+|||++|+...... .+.+++|||+||||||+|++++.++.+++++
T Consensus 151 ~~~qr~a~~~A~~~AGl~~~~li~EP~AAAlay~~~~~~~---------~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a 221 (554)
T 1yuw_A 151 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVG---------AERNVLIFDLGGGTFDVSILTIAAGIFEVKS 221 (554)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEEHHHHHHHHTTCSTTCS---------SCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeCcHHHHHHHHHhhccCC---------CCcEEEEEEcCCCeEEEEEEEEcCCcEEEEE
Confidence 9999999999999999999999999999999998765311 4688999999999999999999999999999
Q ss_pred ecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHH
Q psy6736 207 TAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRAR 286 (1023)
Q Consensus 207 ~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~ 286 (1023)
+.|+.++||.+||++|++|+.++|..+++.++..+++++.+|+.+||++|+.||...+..+.++++.+|.++...|+|++
T Consensus 222 ~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~ 301 (554)
T 1yuw_A 222 TAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRAR 301 (554)
T ss_dssp EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999998888999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 287 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 287 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
|+++++++++++..+|+++|+++++.+.+|+.|+||||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.++
T Consensus 302 ~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~ 381 (554)
T 1yuw_A 302 FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 381 (554)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999778888899999999999999999998
Q ss_pred CCCCcceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEe
Q psy6736 367 GDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFEL 446 (1023)
Q Consensus 367 ~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i 446 (1023)
+...+.++++.+.|++|++||+++.+|.|.++|+||+++|++++.+|++..|+|+.+.|++|||++....+|..||+|.+
T Consensus 382 ~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l 461 (554)
T 1yuw_A 382 GDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFEL 461 (554)
T ss_dssp SCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEE
T ss_pred CCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEE
Confidence 75445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6736 447 TSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNS 526 (1023)
Q Consensus 447 ~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~ 526 (1023)
.++|+.|+|.++|+|+|++|.||+|+|++.+..||++.++++++...+||++|+++++++++++..+|+..+++.++||+
T Consensus 462 ~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~ 541 (554)
T 1yuw_A 462 TGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNS 541 (554)
T ss_dssp ECCCCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEE
T ss_pred eCCCCCcccccEEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998878899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy6736 527 LESYCFNMKSTV 538 (1023)
Q Consensus 527 lE~~iy~~~~~l 538 (1023)
||+|+|++|+.|
T Consensus 542 ~e~~~~~~~~~l 553 (554)
T 1yuw_A 542 LESYAFNMKATV 553 (554)
T ss_dssp CSSCCSCSCCCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988766
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-72 Score=665.88 Aligned_cols=481 Identities=48% Similarity=0.721 Sum_probs=432.6
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||++.++.|.+ +.|.+|.+.+||++.+. ++.+++| ..| .+..+||+++|..
T Consensus 16 va~~~~g~~~i-i~n~~g~~~~PS~V~~~-------------------~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p 74 (509)
T 2v7y_A 16 VAVLEGGEVKV-IPNPEGNRTTPSVVAFK-------------------NGERLVGEVAKRQAITNP-NTIISIKRHMGTD 74 (509)
T ss_dssp EEEEETTEEEE-CCCTTSCSSEECEEEES-------------------SSSEEESHHHHTTTTTCS-SEEECGGGTTTSC
T ss_pred EEEEECCEEEE-EECCCCCcccceEEEEC-------------------CCcEEECHHHHHhHHhCC-CcHHHHHHhcCCC
Confidence 45666666666 66666666666665551 2334455 345 7888999999963
Q ss_pred -CccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecc
Q psy6736 73 -TPWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINE 151 (1023)
Q Consensus 73 -~~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~E 151 (1023)
.+.. .+..++|+++++++| ++|++.|+.+++.++.++|||||+||++.||++|++|++.||++++++++|
T Consensus 75 ~~~~~--~g~~~~~~ei~a~~L-------~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~li~E 145 (509)
T 2v7y_A 75 YKVEI--EGKQYTPQEISAIIL-------QYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINE 145 (509)
T ss_dssp CCEEE--TTEEECHHHHHHHHH-------HHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred cEEEE--CCEEEcHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecC
Confidence 2232 334789999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHH
Q psy6736 152 PTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 231 (1023)
Q Consensus 152 p~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~ 231 (1023)
|+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||.+||+.|++|+.++|+
T Consensus 146 p~AAAlay~~~~~-----------~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~ 214 (509)
T 2v7y_A 146 PTAAALAYGLDKE-----------EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFK 214 (509)
T ss_dssp HHHHHHHTTGGGS-----------CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccC-----------CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999997653 57899999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccC---C-ceeEEEecHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6736 232 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPVEKSLR 307 (1023)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 307 (1023)
.+++.++..+++++.+|+.+||++|+.||...+..+.++.+.+ | .++.++|+|++|+++++|+++++..+|+++|+
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~ 294 (509)
T 2v7y_A 215 QEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQ 294 (509)
T ss_dssp HHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHH
T ss_pred HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888999999999999999999999888888876554 2 46778999999999999999999999999999
Q ss_pred HcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhCCCCcceeeeEEeeeccccce
Q psy6736 308 DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLG 387 (1023)
Q Consensus 308 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sig 387 (1023)
++++.+.+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ++++.+.|++|++||
T Consensus 295 ~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slg 369 (509)
T 2v7y_A 295 DAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLG 369 (509)
T ss_dssp HHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEE
T ss_pred HcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeeccccc
Confidence 99999999999999999999999999999999 6778889999999999999999999873 567889999999999
Q ss_pred EEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCeEEEEEEEcC
Q psy6736 388 IETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDA 467 (1023)
Q Consensus 388 i~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~ 467 (1023)
+++.+|.|.++|+||+++|++++..|++..|+|+.+.|++|||++....+|..+|+|.+.++|+.++|.++|+|+|++|.
T Consensus 370 i~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 449 (509)
T 2v7y_A 370 IETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDA 449 (509)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECT
T ss_pred eeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 468 NGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 468 ~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
||+|+|++.+..||++.++++++. ..||++++++++++++++..+|+..+++.++||+||
T Consensus 450 ~gil~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 450 NGIVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp TSCEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred CceEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 999999999999999999999987 679999999999999999999999999999999987
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-59 Score=559.54 Aligned_cols=357 Identities=50% Similarity=0.813 Sum_probs=337.3
Q ss_pred CcceEEEEEeCCceEEEEEEEEeC----CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 708 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~----~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 708 (1023)
++.++||||+||||||+|++++.+ +.++++++.||.++||++||++|++|+.++|..+++.+...+++++.+|+.+
T Consensus 186 ~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~ 265 (605)
T 4b9q_A 186 GNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265 (605)
T ss_dssp SSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHH
Confidence 467899999999999999999988 8999999999999999999999999999999999999998999999999999
Q ss_pred HHHHhhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccC
Q psy6736 709 CERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 784 (1023)
Q Consensus 709 ~e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr 784 (1023)
||++|+.||...+..+.++.+..+ .++.++|||++|+++++|+++++..+++++|+++++...+|+.|+||||+||
T Consensus 266 aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sr 345 (605)
T 4b9q_A 266 AEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTR 345 (605)
T ss_dssp HHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGG
T ss_pred HHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccC
Confidence 999999999999999888866543 6788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCc
Q psy6736 785 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPT 864 (1023)
Q Consensus 785 ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~ 864 (1023)
+|+|+++|++.| +.++....||++|||+|||++|+.+++. .+++.+.|++|++||+++.+|.|.+|||||+++|+
T Consensus 346 iP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~ 420 (605)
T 4b9q_A 346 MPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420 (605)
T ss_dssp SHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHHHHHHHTS----SCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSE
T ss_pred chHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHHHHHhcCC----CCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCc
Confidence 999999999999 6778889999999999999999999874 46899999999999999999999999999999999
Q ss_pred ceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEE
Q psy6736 865 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKIT 944 (1023)
Q Consensus 865 ~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~ 944 (1023)
+++..|++..|+|+.+.|.||||++....+|..||+|.|.++||.|+|.++|+|+|++|.||+|+|++.+..||++.+++
T Consensus 421 ~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~ 500 (605)
T 4b9q_A 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKIT 500 (605)
T ss_dssp EEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTSCEEEEEEETTTCCEECCE
T ss_pred ceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCCcEEEEEEEecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred eccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 945 ITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
|. +. .+||++||+++++++++|+++|++.+++.++||+||+|+|++|+.+
T Consensus 501 i~--------------------------~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~ 550 (605)
T 4b9q_A 501 IK--------------------------AS-SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQV 550 (605)
T ss_dssp EE--------------------------SC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ec--------------------------CC-CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33 3699999999999999999999999999999999999999999875
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=551.26 Aligned_cols=364 Identities=90% Similarity=1.274 Sum_probs=344.1
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.+.++||||+||||||+|++++.++.++|+++.|+.++||++||++|++|+.++|..+++.++..+++++.+|+.+||++
T Consensus 191 ~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~ 270 (554)
T 1yuw_A 191 AERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA 270 (554)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||...+..+.++++.+|.++...|||++|+++++++++++..+++++|+++++++.+|+.|+||||+|++|+|++.|
T Consensus 271 K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l 350 (554)
T 1yuw_A 271 KRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 350 (554)
T ss_dssp HHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred hhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEe
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTT 872 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~ 872 (1023)
++.|++.++..+.||++|||+|||++|+.+++...+.++++.+.|++|++||+++.+|.|.++|++|+++|++++..|++
T Consensus 351 ~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~ 430 (554)
T 1yuw_A 351 QDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTT 430 (554)
T ss_dssp HHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEE
T ss_pred HHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeee
Confidence 99997788888999999999999999999987544557789999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccc
Q psy6736 873 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRR 952 (1023)
Q Consensus 873 ~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~ 952 (1023)
..|+|+.+.|.||||++....+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.+..||++.++++.
T Consensus 431 ~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~------ 504 (554)
T 1yuw_A 431 YSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT------ 504 (554)
T ss_dssp SSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEEC------
T ss_pred ccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEccCceEEEEEEeccCCCceeEEEe------
Confidence 99999999999999999999999999999999999999999999999999999999999999999886655443
Q ss_pred cccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 953 YLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
+...+||++||+++++++++|+.+|+.++++.++||+||+|+|++|++++
T Consensus 505 --------------------~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~ 554 (554)
T 1yuw_A 505 --------------------NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVE 554 (554)
T ss_dssp --------------------CCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCCC
T ss_pred --------------------cCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34457999999999999999999999999999999999999999999874
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=549.03 Aligned_cols=357 Identities=50% Similarity=0.814 Sum_probs=335.5
Q ss_pred CcceEEEEEeCCceEEEEEEEEe----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 708 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~----~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 708 (1023)
++.++||||+||||||+|++++. ++.++|+++.|+.++||++||++|++|+.++|+.+++.++..+++++.+|+.+
T Consensus 186 ~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 265 (605)
T 2kho_A 186 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265 (605)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 57889999999999999999998 78999999999999999999999999999999999998888889999999999
Q ss_pred HHHHhhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccC
Q psy6736 709 CERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 784 (1023)
Q Consensus 709 ~e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr 784 (1023)
||++|+.||...+..+.++.+.++ .++.++|||++|+++++|+++++..+++++|+++++.+.+|+.|+||||+||
T Consensus 266 aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~sr 345 (605)
T 2kho_A 266 AEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTR 345 (605)
T ss_dssp HHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGG
T ss_pred HHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCccc
Confidence 999999999999888988876542 5677899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCc
Q psy6736 785 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPT 864 (1023)
Q Consensus 785 ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~ 864 (1023)
+|+|++.|++.| +.++....||++|||+|||++|+.+++. ++++.+.|++|++||+++.+|.|.++||+|+++|+
T Consensus 346 ip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~ 420 (605)
T 2kho_A 346 MPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420 (605)
T ss_dssp SHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSE
T ss_pred ChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHHHHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCc
Confidence 999999999999 5678889999999999999999998763 46789999999999999999999999999999999
Q ss_pred ceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEE
Q psy6736 865 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKIT 944 (1023)
Q Consensus 865 ~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~ 944 (1023)
+++..|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.+..||++.+++
T Consensus 421 ~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~ 500 (605)
T 2kho_A 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKIT 500 (605)
T ss_dssp EEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEE
T ss_pred cceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCCCceeEEEEEcCCCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred eccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 945 ITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+.+ . .+||++|++++++++++++.+|+.++++.++||+||+|+|++|+++
T Consensus 501 i~~--------------------------~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 550 (605)
T 2kho_A 501 IKA--------------------------S-SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQV 550 (605)
T ss_dssp ECT--------------------------T-SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--------------------------c-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3 5699999999999999999999999999999999999999999876
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-56 Score=541.08 Aligned_cols=368 Identities=27% Similarity=0.449 Sum_probs=331.8
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
.++.++||||+||||||+|++++.++.++|+++.||.++||++||++|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 194 ~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~ 273 (675)
T 3d2f_A 194 EKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEK 273 (675)
T ss_dssp SCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
+|+.||.+.++.+.++++.++.++.++|||++|++++.|+++++..+++++|+++++++++|+.|+||||+||+|+|+++
T Consensus 274 aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~ 353 (675)
T 3d2f_A 274 LKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 353 (675)
T ss_dssp HHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHH
T ss_pred HHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHH
Confidence 99999998889999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCc----eeEEeecCCCCCCcceE
Q psy6736 792 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG----VMTALIKRNTTIPTKQT 867 (1023)
Q Consensus 792 l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~----~~~~ii~~~~~lP~~~~ 867 (1023)
|++.| +.++..+.||++|||+|||++|+.+++. ++++++.+.|++|++||+++.++ .+.+|||+|+++|++++
T Consensus 354 l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~ls~~--~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~ 430 (675)
T 3d2f_A 354 ISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKL 430 (675)
T ss_dssp HHHHH-TSCEECCSCTTTHHHHHHHHHHHHTCSS--CCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEE
T ss_pred HHHhc-CCCccccCCcchHHHHHHHHHHHHhCCC--CcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccc
Confidence 99999 5677789999999999999999999863 45788999999999999999877 49999999999999999
Q ss_pred EEEEeecCCCCcEEEEE-eecCccccc-cCceeeEEEEecCCCCCCCCC-eEEEEEEECCCccEEEEEEEcccCceeeEE
Q psy6736 868 QTFTTYSDNQPGVLIQV-YEGERAMTK-DNNLLGKFELTSIPPAPRGVP-QIEVTFDIDANGILNVTAIEKSTGKENKIT 944 (1023)
Q Consensus 868 ~~f~~~~~~q~~i~i~i-yeg~~~~~~-~~~~ig~~~l~~~~~~~~g~~-~i~v~f~id~~gil~V~a~~~~~~~~~~~~ 944 (1023)
.+|++..++| +.+ |+|++..+. +|..||+|.|.++|+.+.|.+ +|+|+|++|.||+|+|++.......+.+
T Consensus 431 ~~f~~~~~~~----~~~~~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~-- 504 (675)
T 3d2f_A 431 ITLNRTGDFS----MAASYTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAG-- 504 (675)
T ss_dssp EEEEESSCEE----EEEEESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------
T ss_pred eeeeecCCce----EEEEEcCCcccccccCceeeEEEecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEEeeccccc--
Confidence 9999865543 333 789988887 999999999999999999975 9999999999999999997532211100
Q ss_pred eccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccC
Q psy6736 945 ITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKGR 1022 (1023)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~~ 1022 (1023)
+.+.+++..+++|++..++||++||+++++++.+|..+|+.++++.++||+||+|+|++|+++.
T Consensus 505 --------------~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~ 568 (675)
T 3d2f_A 505 --------------SDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLE 568 (675)
T ss_dssp ----------------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------ccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455667788877778999999999999999999999999999999999999999999874
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-54 Score=507.50 Aligned_cols=347 Identities=53% Similarity=0.852 Sum_probs=320.3
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
++.++||||+||||||+|++++.++.++++++.|+.++||++||+.|++|+.++|..+++.++..+++++.+|+.+||++
T Consensus 159 ~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~ 238 (509)
T 2v7y_A 159 EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKA 238 (509)
T ss_dssp CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999988888888899999999999999
Q ss_pred hhhcCCCceeEEEEecccC---C-cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~---~-~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|+.||...+..+.++.+.+ | .++.++|||++|+++++|+++++..+++++|+++++.+.+|+.|+||||+|++|+|
T Consensus 239 K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v 318 (509)
T 2v7y_A 239 KKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAV 318 (509)
T ss_dssp HHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHH
T ss_pred HHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHH
Confidence 9999999888888886654 2 46778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhCCCcccccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEE
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 868 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~ 868 (1023)
++.|++.| +.++....||++|||+|||++|+.+++. ++++.+.|++|++||+++.+|.|.++|+||+++|++++.
T Consensus 319 ~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~li~~~~~iP~~~~~ 393 (509)
T 2v7y_A 319 QEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQ 393 (509)
T ss_dssp HHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEEEEETTTEEEEEECTTCBSSEEEEE
T ss_pred HHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeeccccceeecCCceEEEEeCCCcCCcceEE
Confidence 99999999 5677889999999999999999999864 467889999999999999999999999999999999999
Q ss_pred EEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 869 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 869 ~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
.|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++.+..||++.++++..
T Consensus 394 ~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~~g~~~~~~i~~- 472 (509)
T 2v7y_A 394 VFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKS- 472 (509)
T ss_dssp EECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECS-
T ss_pred EEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEEEEEcCCCcEEEEEEEe-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876655543
Q ss_pred cccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 949 RGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE 1011 (1023)
. .+||++||+++++++++|+.+|+.++++.++||+||
T Consensus 473 -------------------------~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 473 -------------------------S-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp -------------------------S-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred -------------------------c-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 3 469999999999999999999999999999999997
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=445.22 Aligned_cols=315 Identities=69% Similarity=0.942 Sum_probs=281.6
Q ss_pred cccceeeEEEeccCeEEee--------cCCCceeeeeecccCCcCcc--------------------------ccccccc
Q psy6736 37 LIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDLTPW--------------------------DGARLKA 82 (1023)
Q Consensus 37 ~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~~~~--------------------------~~~~~~~ 82 (1023)
..+||++.+. . +...+| ..+..+..++|+++|...-. .......
T Consensus 55 ~~~PS~v~~~-~-~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~ 132 (404)
T 3i33_A 55 RTTPSYVAFT-D-TERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKT 132 (404)
T ss_dssp SSEECCEEEC-S-SCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEE
T ss_pred cccceEEEEC-C-CCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceE
Confidence 3445555444 2 244556 46778888999999874210 1111257
Q ss_pred cCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccc
Q psy6736 83 VSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLD 162 (1023)
Q Consensus 83 ~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~ 162 (1023)
++|+++++++| ++|++.++.+++.++.++|||||++|++.||++|++|++.||++++++++||+|||++|+..
T Consensus 133 ~~~~ei~a~~L-------~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~ 205 (404)
T 3i33_A 133 FFPEEISSMVL-------TKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLD 205 (404)
T ss_dssp ECHHHHHHHHH-------HHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTT
T ss_pred EcHHHHHHHHH-------HHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhh
Confidence 89999999999 99999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccH
Q psy6736 163 KKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNK 242 (1023)
Q Consensus 163 ~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~ 242 (1023)
.... ...+..++|||+||||||++++++.++.+++++..++..+||.+||+.|++++.++|..+++.++..++
T Consensus 206 ~~~~-------~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~ 278 (404)
T 3i33_A 206 KKGC-------AGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNK 278 (404)
T ss_dssp SSCS-------SSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCH
T ss_pred cccc-------cCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence 5421 114678999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEE
Q psy6736 243 RALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 322 (1023)
Q Consensus 243 ~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~Lv 322 (1023)
+.+.+|+.+||++|+.||......+.++.+.++.++.+.|+|++|+++++++++++.++|.++|+.+++...+|+.|+||
T Consensus 279 ~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLv 358 (404)
T 3i33_A 279 RAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLV 358 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEE
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 323 GGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 323 GG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++
T Consensus 359 GG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 359 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp SGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred CCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998888989999999999999999999875
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=445.33 Aligned_cols=314 Identities=27% Similarity=0.432 Sum_probs=279.2
Q ss_pred cccceeeEEEeccCeEEee--------cCCCceeeeeecccCCcCcc----------------------cc------ccc
Q psy6736 37 LIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDLTPW----------------------DG------ARL 80 (1023)
Q Consensus 37 ~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~~~~----------------------~~------~~~ 80 (1023)
..+||++++. ++...+| ..|..++.+||+++|...-. .. ...
T Consensus 45 ~~~PS~v~~~--~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 122 (409)
T 4gni_A 45 RQIPTILSYV--DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEP 122 (409)
T ss_dssp SSEECEEEEE--TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCCGGGTTSCCCEEETTEEEEEECCSSCSSCCC
T ss_pred ccCceEEEEC--CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhhhhhccccceecCCCcEEEEEecCCCCCCcc
Confidence 4566666655 4455667 46778999999999874210 00 123
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhc
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~ 160 (1023)
..++|+++++++| ++|++.|+.+++.++.++|||||++|++.||++|++||+.||++++++++||+|||++|+
T Consensus 123 ~~~~~~ev~~~~L-------~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~ 195 (409)
T 4gni_A 123 STLTVSEIATRYL-------RRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALIAAAAAADLEVLQLISEPAAAVLAYD 195 (409)
T ss_dssp EEEEHHHHHHHHH-------HHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTT
T ss_pred eEEcHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHHh
Confidence 4789999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhc--cCc
Q psy6736 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDL 238 (1023)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~--~~~ 238 (1023)
..... ...+.+++|||+||||||+|++++.++.++++++.++..+||.+||+.|++++..+|..+++ .+.
T Consensus 196 ~~~~~--------~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~ 267 (409)
T 4gni_A 196 ARPEA--------TISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDP 267 (409)
T ss_dssp C--------------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCG
T ss_pred ccccc--------CCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 76421 11678999999999999999999999999999999999999999999999999999998888 788
Q ss_pred cccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCe
Q psy6736 239 TTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 318 (1023)
Q Consensus 239 ~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 318 (1023)
..+++.+.+|+.+||++|+.||.+....+.++.+.++.++..+|||++|+++++++++++..+|+++|+.+++.+.+|+.
T Consensus 268 ~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 347 (409)
T 4gni_A 268 RENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDE 347 (409)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHcCCc-cc------cccCCCchhHHhHHHHHHHHHhC
Q psy6736 319 IVLVGGSTRIPKVQKLLQDFFNGK-EL------NKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 319 V~LvGG~sr~p~v~~~l~~~f~~~-~i------~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
|+||||+|++|+|++.|++.|+.. .+ ....||++|||+|||++|+....
T Consensus 348 V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 348 VIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp EEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred EEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999654 34 57889999999999999998754
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=423.79 Aligned_cols=310 Identities=43% Similarity=0.654 Sum_probs=269.7
Q ss_pred cccceeeEEEeccCeEEee--------cCCCceeeeeecccCCcCc-----------cc------------cccccccCH
Q psy6736 37 LIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDLTP-----------WD------------GARLKAVSA 85 (1023)
Q Consensus 37 ~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~~~-----------~~------------~~~~~~~~~ 85 (1023)
..+||+++++ .++.+.+| ..|..+..++|+++|...- .. ...+..++|
T Consensus 34 ~~~PS~v~~~-~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 112 (383)
T 1dkg_D 34 RTTPSIIAYT-QDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAP 112 (383)
T ss_dssp SEEECEEEEC-TTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECH
T ss_pred cccceEEEEE-CCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcH
Confidence 4455555554 34455566 3577888899999995310 00 002347899
Q ss_pred HHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhcccccc
Q psy6736 86 QELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 165 (1023)
Q Consensus 86 ~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~ 165 (1023)
+++++++| ++|++.|+.+++.++.++|||||++|++.||+++++|++.||++++.+++||+|||++|+....
T Consensus 113 ~~i~~~~L-------~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~- 184 (383)
T 1dkg_D 113 PQISAEVL-------KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG- 184 (383)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC--
T ss_pred HHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHHHhccC-
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CccccccCCCCCcEEEEEEeCCceEEEEEEEEe----CCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCcccc
Q psy6736 166 GSTAVEYNGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 241 (1023)
Q Consensus 166 ~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~ 241 (1023)
..+.+++|||+||||||+++++.. ++.++++++.++..+||++||+.|++++.++|..+++.++..+
T Consensus 185 ---------~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~ 255 (383)
T 1dkg_D 185 ---------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRND 255 (383)
T ss_dssp ---------CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTC
T ss_pred ---------CCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 146789999999999999999998 5788999989989999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHhHHcCCCCceEEEEecccC---C-ceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcC
Q psy6736 242 KRALRRLRTACERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH 317 (1023)
Q Consensus 242 ~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 317 (1023)
++.+.+|+.+||++|+.|+...+..+.++.+.+ | .++.++|+|++|+++++|+++++.++|.++|+.+++.+.+++
T Consensus 256 ~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 335 (383)
T 1dkg_D 256 PLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDID 335 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCC
Confidence 999999999999999999998888888776543 3 456789999999999999999999999999999999889999
Q ss_pred eEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 318 ~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
.|+|+||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+
T Consensus 336 ~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 336 DVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp EEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred EEEEecCccccHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 5778888999999999999999765
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=309.75 Aligned_cols=215 Identities=46% Similarity=0.696 Sum_probs=205.9
Q ss_pred EEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCC
Q psy6736 377 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456 (1023)
Q Consensus 377 ~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 456 (1023)
++.|++|+|+|+++.+|.|.+|||||++||++++.+|+|..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy6736 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 536 (1023)
Q Consensus 457 ~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~ 536 (1023)
+.|+|+|++|.||+|+|++.+..||++..++|++. ..||++|+++++++++++..+|++.+++.++||.||+|+|++++
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~ 160 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 160 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886 56999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6736 537 TVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQ 597 (1023)
Q Consensus 537 ~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e 597 (1023)
.|++ +..++++++++++.+.++++++||+++ +.++|++++++|++.+.|+..|+++
T Consensus 161 ~l~~--~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 161 QVEE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHH--HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHH--hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9985 778999999999999999999999987 6889999999999999999999876
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=293.10 Aligned_cols=214 Identities=33% Similarity=0.526 Sum_probs=203.8
Q ss_pred eeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCe
Q psy6736 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 458 (1023)
Q Consensus 379 ~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 458 (1023)
.|++|++||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|+||||++..+.+|..||+|.|.++|++|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy6736 459 IEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTV 538 (1023)
Q Consensus 459 i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l 538 (1023)
|+|+|++|.||+|+|++.+..+|++..+++... ..||++++++++++++++..+|+..+++.++||.||+|+|++|+.|
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 4599999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy6736 539 EDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQG 598 (1023)
Q Consensus 539 ~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~ 598 (1023)
++ +..++++++++++.+.++++++||+.+ +.++|++++++|++++.||..|++..
T Consensus 160 ~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~~ 214 (227)
T 1u00_A 160 AA--DAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 214 (227)
T ss_dssp HH--HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 678999999999999999999999954 58899999999999999999987643
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=315.24 Aligned_cols=234 Identities=21% Similarity=0.286 Sum_probs=192.0
Q ss_pred hHHHHHHHH--HhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCc
Q psy6736 101 ILKKKTSED--ILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGER 178 (1023)
Q Consensus 101 ~~l~~~a~~--~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~ 178 (1023)
+++++.+.. .++ ..++|||||++|++.||+++++|++.||++++.+++||+|||++|+.... ++.
T Consensus 81 ~~~l~~~~~~~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-----------~~~ 147 (344)
T 1jce_A 81 RYFINKAKGGMNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVE-----------EPS 147 (344)
T ss_dssp HHHHHHHHTSCCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHTTCCTT-----------SSS
T ss_pred HHHHHHHhhccccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEeccCCHHHHHHhcCCCCC-----------CCc
Confidence 555555543 233 37899999999999999999999999999999999999999999986543 567
Q ss_pred EEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHH
Q psy6736 179 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 258 (1023)
Q Consensus 179 ~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~ 258 (1023)
+++|||+||||||+++++.... + ..++..+||.+||+.|++++.+++. .++. ...||++|+.
T Consensus 148 ~~lVvDiGggttdvsv~~~~~~-~----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~~ 209 (344)
T 1jce_A 148 GNMVVDIGGGTTEVAVISLGSI-V----TWESIRIAGDEMDEAIVQYVRETYR----VAIG---------ERTAERVKIE 209 (344)
T ss_dssp CEEEEEECSSCEEEEEEETTEE-E----EEEEESCSHHHHHHHHHHHHHHHHC----EECC---------HHHHHHHHHH
T ss_pred eEEEEEeCCCeEEEEEEEcCCE-E----eeCCCCccChhHHHHHHHHHHHHhC----cccC---------HHHHHHHHHH
Confidence 8999999999999999987432 1 2456889999999999999987763 2221 3579999999
Q ss_pred cCCCCc------eEEEEe--cccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC--ccCc-CeEEEEcCCCC
Q psy6736 259 LSSSTQ------ASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQI-HDIVLVGGSTR 327 (1023)
Q Consensus 259 Ls~~~~------~~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i-~~V~LvGG~sr 327 (1023)
|+.... ..+.++ .+.+|.++.++|+|++|+++++|.++++.+.|.++|+.++.. .+.+ +.|+|+||+|+
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ 289 (344)
T 1jce_A 210 IGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSL 289 (344)
T ss_dssp HCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGC
T ss_pred HhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECcccc
Confidence 987643 244443 345677788999999999999999999999999999987532 2234 68999999999
Q ss_pred cHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 328 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 328 ~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
+|+|++.|++.| +.++....||++|||+||+++|+.++
T Consensus 290 ~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 290 LRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp SBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred chHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 999999999999 56777888999999999999987554
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=264.07 Aligned_cols=166 Identities=57% Similarity=0.842 Sum_probs=150.9
Q ss_pred cccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCC
Q psy6736 829 EVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPP 908 (1023)
Q Consensus 829 ~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~ 908 (1023)
....+.+.|++|+|||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++||
T Consensus 16 ~~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp 95 (182)
T 3n8e_A 16 ENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPP 95 (182)
T ss_dssp --------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCC
T ss_pred CCCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHH
Q psy6736 909 APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988 (1023)
Q Consensus 909 ~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~ 988 (1023)
+|+|.++|+|+|++|.||+|+|+|.+..||++.+++|. +. .+||++||+++++
T Consensus 96 ~p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~--------------------------~~-~~Ls~eei~~mi~ 148 (182)
T 3n8e_A 96 APRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQ--------------------------SS-GGLSKDDIENMVK 148 (182)
T ss_dssp CCTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEES--------------------------CC-CCCCHHHHHHHHH
T ss_pred CCCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEe--------------------------cC-ccCCHHHHHHHHH
Confidence 99999999999999999999999999999987665544 34 5799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 989 DAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 989 ~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
++++|+++|++.+++.++||.||+|+|+||+++
T Consensus 149 ~a~~~~~eD~~~~~~~e~kn~le~~iy~~~~~l 181 (182)
T 3n8e_A 149 NAEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181 (182)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=263.18 Aligned_cols=162 Identities=53% Similarity=0.812 Sum_probs=153.4
Q ss_pred eEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCC
Q psy6736 833 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 912 (1023)
Q Consensus 833 ~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g 912 (1023)
+++.|++|+|||+++.+|.|.+|||||++||++++.+|+|..|+|+.+.|.||||++..+.+|..||+|.|.++||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHH
Q psy6736 913 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEK 992 (1023)
Q Consensus 913 ~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~ 992 (1023)
.++|+|+|++|.||+|+|+|.+..||++.+++|.++ .+||++||++|++++++
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~---------------------------~~Ls~eeI~~m~~~a~~ 133 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS---------------------------SGLNEDEIQKMVRDAEA 133 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT---------------------------CSCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeecc---------------------------ccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999876665432 35999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 993 YKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 993 ~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
|+.+|+..+++.++||.||+|+|++|+++
T Consensus 134 ~~~eD~~~r~~~e~kn~le~~i~~~~~~l 162 (219)
T 4e81_A 134 NAEADRKFEELVQTRNQGDHLLHSTRKQV 162 (219)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=253.51 Aligned_cols=165 Identities=56% Similarity=0.844 Sum_probs=154.7
Q ss_pred eeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCC
Q psy6736 373 VQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPA 452 (1023)
Q Consensus 373 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 452 (1023)
...+.+.|++|+|||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy6736 453 PRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCF 532 (1023)
Q Consensus 453 ~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy 532 (1023)
|+|.++|+|+|++|.||+|+|++.+..||++..++|.+. ..||++|+++++++++++..+|++.+++.++||.||+|+|
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy 175 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIH 175 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy6736 533 NMKSTV 538 (1023)
Q Consensus 533 ~~~~~l 538 (1023)
++|+.|
T Consensus 176 ~~~~~l 181 (182)
T 3n8e_A 176 DTETKM 181 (182)
T ss_dssp CCSCCC
T ss_pred HHHHhh
Confidence 998766
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=290.96 Aligned_cols=194 Identities=31% Similarity=0.592 Sum_probs=181.3
Q ss_pred CCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhc--cCcchhHHHHHHHHHH
Q psy6736 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNKRALRRLRTA 708 (1023)
Q Consensus 631 ~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~ 708 (1023)
.+++.++||||+||||||+|++++.++.++++++.++..+||.+||+.|++++.++|..+++ .+...+++.+.+|+.+
T Consensus 201 ~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 280 (409)
T 4gni_A 201 TISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLE 280 (409)
T ss_dssp --CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999998888 7888889999999999
Q ss_pred HHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 709 CERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 709 ~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
||++|+.||.+.+..+.++.+.++.++...|||++|+++++|+++++..+|+++|+++++...+|+.|+||||+|++|+|
T Consensus 281 ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v 360 (409)
T 4gni_A 281 AESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRI 360 (409)
T ss_dssp HHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHH
T ss_pred HHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCc-cc------CCCCCCccceecchHHHHHHHhC
Q psy6736 789 QKLLQDFFNGK-EL------NKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 789 ~~~l~~~f~~~-~~------~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++.|++.|+.. ++ ....||++|||+|||++|+....
T Consensus 361 ~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 361 AANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 99999999654 34 57899999999999999988753
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=288.68 Aligned_cols=192 Identities=90% Similarity=1.297 Sum_probs=184.0
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
.+.++||||+||||||+|++++.++.++++++.++..+||.+||+.|++++.++|..+++.+...+++.+.+|+.+||++
T Consensus 212 ~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~ 291 (404)
T 3i33_A 212 GEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERA 291 (404)
T ss_dssp SCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHH
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 792 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l 792 (1023)
|+.||......+.++.+.++.++.+.|+|++|+++++++++++.+++.++|+.+++...+|+.|+||||+|++|+|++.|
T Consensus 292 K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l 371 (404)
T 3i33_A 292 KRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLL 371 (404)
T ss_dssp HHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred HHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 793 QDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 793 ~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++.|++.++....||++|||+|||++|+.+++
T Consensus 372 ~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 372 QDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99998788888999999999999999999864
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=236.72 Aligned_cols=151 Identities=68% Similarity=1.041 Sum_probs=142.1
Q ss_pred EeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCC
Q psy6736 835 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 914 (1023)
Q Consensus 835 ~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~ 914 (1023)
+.|++|+|||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHH
Q psy6736 915 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 994 (1023)
Q Consensus 915 ~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~ 994 (1023)
+|+|+|++|.||+|+|+|.+..||++.+++| .+...+||++||+++++++++|+
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I--------------------------~~~~~~ls~~ei~~~~~~a~~~~ 135 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITI--------------------------TNDKGRLTQEEIDRMVEEAEKFA 135 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEE--------------------------ECCTTCCCHHHHHHHHHHHHHTH
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEE--------------------------ecCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765544 44456799999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy6736 995 AEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 995 ~~d~~~~~~~~akN~lE 1011 (1023)
++|++.+++.++||+||
T Consensus 136 ~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 136 SEDASIKAKVESRNKLE 152 (152)
T ss_dssp HHHHHHHHHHHCSCCCC
T ss_pred HhhHHHHHHHHHHhhcC
Confidence 99999999999999986
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=237.27 Aligned_cols=151 Identities=70% Similarity=1.072 Sum_probs=138.7
Q ss_pred EeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCC
Q psy6736 835 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 914 (1023)
Q Consensus 835 ~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~ 914 (1023)
+.|++|+|||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHH
Q psy6736 915 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 994 (1023)
Q Consensus 915 ~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~ 994 (1023)
+|+|+|++|.||+|+|+|.+..||++.+++|. +..++||++||+++++++++|+
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~--------------------------~~~~~Ls~~ei~~~~~~a~~~~ 135 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQ--------------------------NEKGRLTQSDIDRMVHEAKQFE 135 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEEC--------------------------CC----CHHHHHHHHHHHHHTH
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEE--------------------------cCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987765554 4445799999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy6736 995 AEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 995 ~~d~~~~~~~~akN~lE 1011 (1023)
++|++.+++.++||.||
T Consensus 136 ~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 136 KEDGEQRERVQARNQLE 152 (152)
T ss_dssp HHHHHHHHTCCCCSEEC
T ss_pred HhhHHHHHHHHHHhhcC
Confidence 99999999999999886
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=247.64 Aligned_cols=159 Identities=40% Similarity=0.636 Sum_probs=149.5
Q ss_pred eeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCe
Q psy6736 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 915 (1023)
Q Consensus 836 ~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~ 915 (1023)
.|++|++||+++.+|.|.+|||+|++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHHH
Q psy6736 916 IEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKA 995 (1023)
Q Consensus 916 i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~~ 995 (1023)
|+|+|++|.||+|+|++.+..+|++.++++. +. .+||+++|+++++++.+|+.
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~--------------------------~~-~~Ls~eei~~~~~~~~~~~~ 133 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVK--------------------------PS-YGLTDSEIASMIKDSMSYAE 133 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEEC--------------------------CC-SCCCHHHHHHHHHHHHHTHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEE--------------------------ec-cCCCHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999886655443 33 35999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 996 EDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 996 ~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
+|+..+++.++||+||+|||.+|+++
T Consensus 134 ~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 134 QDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-28 Score=235.53 Aligned_cols=150 Identities=60% Similarity=0.921 Sum_probs=140.2
Q ss_pred EeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCC
Q psy6736 835 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 914 (1023)
Q Consensus 835 ~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~ 914 (1023)
+.|++|+|||+++.+|.|.+|||||++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHH
Q psy6736 915 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 994 (1023)
Q Consensus 915 ~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~ 994 (1023)
+|+|+|++|.||+|+|+|.+..||++.+++| .+. .+||++||+++++++++|+
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I--------------------------~~~-~~Ls~~ei~~~~~~a~~~~ 134 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVI--------------------------QSS-GGLSKDQIENMIKEAEKNA 134 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEE--------------------------ECS-SSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEE--------------------------ecC-CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765544 444 5799999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy6736 995 AEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 995 ~~d~~~~~~~~akN~lE 1011 (1023)
++|++.+++.++||+||
T Consensus 135 ~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 135 AEDAKRKELVEVINQAE 151 (151)
T ss_dssp HHHTTCCCEEECBCCCC
T ss_pred HHhHHHHHHHHHHhhcC
Confidence 99999999999999875
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=231.02 Aligned_cols=151 Identities=68% Similarity=1.041 Sum_probs=146.7
Q ss_pred EeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCC
Q psy6736 378 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457 (1023)
Q Consensus 378 ~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 457 (1023)
+.|++|+|+|+++.+|.|.+|||||+++|++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 458 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
+|+|+|++|.||+|+|++.+..||++..++|.+..+.||+++++++++++++|..+|+..+++.++||.||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999988899999999999999999999999999999999886
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=232.10 Aligned_cols=151 Identities=70% Similarity=1.072 Sum_probs=142.2
Q ss_pred EeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCC
Q psy6736 378 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457 (1023)
Q Consensus 378 ~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 457 (1023)
+.|++|+|+|+++.+|.|.+|||||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 458 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
.|+|+|++|.||+|+|++.+..||++..++|.++.+.||++++++++++++++..+|++.+++.++||.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999988889999999999999999999999999999999875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=271.15 Aligned_cols=189 Identities=48% Similarity=0.800 Sum_probs=172.8
Q ss_pred CcceEEEEEeCCceEEEEEEEEe----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 708 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~----~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 708 (1023)
++.++||||+||||||+|+++.. ++.++++++.++..+||++||+.|++++.+++..+++.++..+++.+.+|+..
T Consensus 186 ~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (383)
T 1dkg_D 186 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEA 265 (383)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 56789999999999999999998 67889999999999999999999999999999988888888888999999999
Q ss_pred HHHHhhhcCCCceeEEEEecccC---C-cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccC
Q psy6736 709 CERAKRTLSSSTQASIEIDSLFE---G-VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 784 (1023)
Q Consensus 709 ~e~~K~~Ls~~~~~~~~i~~~~~---~-~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sr 784 (1023)
||++|+.||...+..+.++.+.+ | .++.++|||++|+++++|+++++.+++.++|+++++.+.+++.|+|+||+|+
T Consensus 266 ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~ 345 (383)
T 1dkg_D 266 AEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTR 345 (383)
T ss_dssp HHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGG
T ss_pred HHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccc
Confidence 99999999998888888876543 3 4567899999999999999999999999999999998899999999999999
Q ss_pred cHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 785 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 785 ip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+|+|++.|++.| +.++..+.||++|||+|||++|+.+
T Consensus 346 ~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 346 MPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp SHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhh
Confidence 999999999999 5677888999999999999999765
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=230.14 Aligned_cols=150 Identities=60% Similarity=0.921 Sum_probs=144.0
Q ss_pred EeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCC
Q psy6736 378 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457 (1023)
Q Consensus 378 ~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 457 (1023)
+.|++|+|+|+++.+|.|.+|||||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 458 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
+|+|+|++|.||+|+|++.+..||++..++|.+. ..||++++++++++++++..+|++.+++.++||.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988 899999999999999999999999999888888875
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=223.15 Aligned_cols=151 Identities=63% Similarity=0.973 Sum_probs=140.9
Q ss_pred EeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCC
Q psy6736 835 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 914 (1023)
Q Consensus 835 ~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~ 914 (1023)
+.|++|++||+++.+|.|.+||++|++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHHHHHHHH
Q psy6736 915 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 994 (1023)
Q Consensus 915 ~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~~~~~~~ 994 (1023)
+|+|+|++|.||+|+|++.+..+|++..+++. +...+||++||+++++++.+|+
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~--------------------------~~~~~ls~eei~~~~~~~~~~~ 135 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT--------------------------NDHNRLSPEDIERMINDADKFA 135 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEEC--------------------------SSSSCCCHHHHHHHHHHHHHTH
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEee--------------------------ccccCCCHHHHHHHHHHHHHhH
Confidence 99999999999999999999999886655444 3445799999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy6736 995 AEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 995 ~~d~~~~~~~~akN~lE 1011 (1023)
.+|+..+++.++||+||
T Consensus 136 ~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 136 ADDQAQKEKVESRNELE 152 (152)
T ss_dssp HHHHHHHHHSCCCSEEC
T ss_pred hccHHHHHHHHHHhhcC
Confidence 99999999999999886
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=217.50 Aligned_cols=151 Identities=63% Similarity=0.973 Sum_probs=145.4
Q ss_pred EeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCC
Q psy6736 378 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVP 457 (1023)
Q Consensus 378 ~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~ 457 (1023)
+.|++|++||+++.+|.|.+||+||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|++|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 458 QIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 458 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
+|+|+|++|.||+|+|++.+..+|+...+++.+..+.||++++++++++++++..+|+..+++.++||.||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999887789999999999999999999999999999999875
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=223.27 Aligned_cols=208 Identities=20% Similarity=0.270 Sum_probs=175.8
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhc
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYG 160 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~ 160 (1023)
+.+...+....+| +++++.++.+.+..+..+++|+|++|...+|++++++++.+|+++..++.||+|++++|+
T Consensus 65 g~i~d~~~~~~~l-------~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~ 137 (272)
T 3h1q_A 65 GLVVDYIGAIQIV-------RELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALG 137 (272)
T ss_dssp TBCTTHHHHHHHH-------HHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHT
T ss_pred CEEEcHHHHHHHH-------HHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHc
Confidence 3455556667777 899999999888888999999999999999999999999999999999999999999886
Q ss_pred cccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccc
Q psy6736 161 LDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 240 (1023)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~ 240 (1023)
.. ..+|+|+|||||+++++. .+.+. ...+..+||.+||+.+.+++.-.
T Consensus 138 ~~----------------~~~viDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~~~----------- 185 (272)
T 3h1q_A 138 IN----------------DGIVVDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYKIP----------- 185 (272)
T ss_dssp CS----------------SEEEEEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHTCC-----------
T ss_pred CC----------------CEEEEEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhCCC-----------
Confidence 42 149999999999999987 33322 34668899999999998876411
Q ss_pred cHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEE
Q psy6736 241 NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIV 320 (1023)
Q Consensus 241 ~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~ 320 (1023)
...||++|+.++ +++++++++.++++++...+.+.++..+ +++.|+
T Consensus 186 --------~~~ae~~k~~~~----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~iv 231 (272)
T 3h1q_A 186 --------FEEAETIKKDFS----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVY 231 (272)
T ss_dssp --------HHHHHHHHHSST----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEE
T ss_pred --------HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEE
Confidence 237888998875 5889999999999999999999998654 478999
Q ss_pred EEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHH
Q psy6736 321 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 321 LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
|+||++++|++++.|++.| +.++..+.||++++|+|||++|
T Consensus 232 L~GG~a~~~~l~~~l~~~l-~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 232 VVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp EESGGGGSTTHHHHHHHHH-SSCCBCCSSGGGHHHHHHHTTC
T ss_pred EECCccchhhHHHHHHHHh-CCCccccCChHHHHHHHHHhcC
Confidence 9999999999999999999 6788888999999999999864
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-24 Score=237.17 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=172.1
Q ss_pred cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcce--EecCCCCCHHHHHHHHHHHHHc--------C----
Q psy6736 77 GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNE--GLIPAYFNISSVKSTKDSGTIA--------G---- 142 (1023)
Q Consensus 77 ~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~v--itVPa~~~~~qr~~l~~Aa~~A--------G---- 142 (1023)
+.....+.++...++++ ..|+..++...+.+ .++| |+||++|++.||+++++|+..+ |
T Consensus 89 ~l~~~~~~~~~~~~ll~-------~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~ 160 (346)
T 2fsj_A 89 PQGDGRLASKEAFPLIA-------AALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQ 160 (346)
T ss_dssp CSSTTCTTSTTTHHHHH-------HHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEE
T ss_pred ccCCCcccChhHHHHHH-------HHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEE
Confidence 33445667777777776 55555432233333 5699 9999999999999999997776 4
Q ss_pred --CceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHH
Q psy6736 143 --LNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 220 (1023)
Q Consensus 143 --l~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~ 220 (1023)
++.+++++||+|||++| ...... .....+++|||+||||||++++++.++. .+.+.+++..+||.+|++
T Consensus 161 i~v~~v~li~Ep~AAa~~~-l~~~~~-------~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~ 231 (346)
T 2fsj_A 161 FNITRLIMRPQGVGAALYL-LNQGII-------EQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAIS 231 (346)
T ss_dssp EEEEEEEEEETTHHHHHHH-HHHTSS-------CCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHH
T ss_pred EEEEEEEEEccHHHHHHHh-hccccc-------cccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHH
Confidence 35688999999999988 221100 0134689999999999999999987776 566556778999999999
Q ss_pred HHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHH-HHHhHHHHHHHH
Q psy6736 221 RMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF-EELNADLFRGTM 299 (1023)
Q Consensus 221 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~-e~~~~~~~~~i~ 299 (1023)
.|++++.++++... .+. ...+| . ...+.+ .+. .++++++ +++++++++++.
T Consensus 232 ~I~~~i~~~~g~~~--~i~---------~~~~e-------~--~~~~~~----~g~----~~~~~~i~~~~i~~~~~~i~ 283 (346)
T 2fsj_A 232 ALSRKIAKETGFVV--PFD---------LAQEA-------L--SHPVMF----RQK----QVGGPEVSGPILEDLANRII 283 (346)
T ss_dssp HHHHHHHHHHCCCC--CHH---------HHHHH-------T--TSCEEE----TTE----EECSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc--CCC---------HHHHh-------c--CCeEeE----CCc----cCCHHHHHHHHHHHHHHHHH
Confidence 99988877664100 111 11222 0 112222 232 3558999 999999999999
Q ss_pred HHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccc-cccCCCchhHHhHHHHHHH
Q psy6736 300 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 300 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i-~~~~~pd~aVa~GAa~~a~ 363 (1023)
+.|++.|+++ .++++.|+|+||+|++ +++.|++.|+...+ ....||++|+|+|+..++.
T Consensus 284 ~~i~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 284 ENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 9999999876 5578999999999999 99999999963322 1266999999999998764
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=233.60 Aligned_cols=244 Identities=14% Similarity=0.123 Sum_probs=190.4
Q ss_pred cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCc-ceEecCCC------------CCH---------------
Q psy6736 77 GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQ-NEGLIPAY------------FNI--------------- 128 (1023)
Q Consensus 77 ~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~-~vitVPa~------------~~~--------------- 128 (1023)
..+.+.+...+-.+..+ +++++.|+..+|.++++ +++++|.. ++.
T Consensus 44 gv~~G~I~di~~~~~~I-------~~av~~ae~~~g~~i~~~v~v~i~g~~~~i~s~~~~~~i~~~~~~i~~~di~~~i~ 116 (419)
T 4a2a_A 44 GLDEGEIKDAIAFKESV-------NTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQS 116 (419)
T ss_dssp SEETTEESBHHHHHHHH-------HHHHHHHHHHHTSCCCSEEEEEECCTTCEEEEEEEEEECCSSCEECCHHHHHHHHH
T ss_pred CeeCCEEEcHHHHHHHH-------HHHHHHHHHHcCCCcCceEEEEEcCCcCeEEEEEeEEEEeCCCCEECHHHHHHHHH
Confidence 34445566556656666 89999999999999999 99999987 210
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHcCCceeeeecchHHHHH
Q psy6736 129 ---------------------------------------------------SSVKSTKDSGTIAGLNVLRIINEPTAAAI 157 (1023)
Q Consensus 129 ---------------------------------------------------~qr~~l~~Aa~~AGl~~~~li~Ep~AAal 157 (1023)
..-+.+.+|++.|||++..++.||.|||+
T Consensus 117 ~a~~~~~p~d~~~l~~~p~~f~vDg~~~i~~P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~ 196 (419)
T 4a2a_A 117 EALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAE 196 (419)
T ss_dssp HHHHHHSCTTEEEEEEEEEEEEETTTEEESCCTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTSCSCEEEEEHHHHHHH
T ss_pred HhhhhcCCCCCEEEEEEeeEEEECCccCcCCCCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcCCcEEEEEEHHHHHHH
Confidence 02257899999999999999999999999
Q ss_pred HhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccC
Q psy6736 158 AYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 237 (1023)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 237 (1023)
+|..... ++..++|+|+||||||+++++ ++.+.. .++..+||++||+.|+..+.-.
T Consensus 197 a~l~~~~-----------~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~it~dIa~~l~~~-------- 252 (419)
T 4a2a_A 197 GVLTTPE-----------KDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHVIKDVSAVLDTS-------- 252 (419)
T ss_dssp HHCCHHH-----------HHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHHHHHHHHHHTCC--------
T ss_pred Hhhcccc-----------ccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHHHHHHHHHHCCC--------
Confidence 9865433 456799999999999999987 454432 3457899999999998764322
Q ss_pred ccccHHHHHHHHHHHHHHhHHcCCC-----CceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCC-
Q psy6736 238 LTTNKRALRRLRTACERAKRTLSSS-----TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKM- 311 (1023)
Q Consensus 238 ~~~~~~~~~~L~~~ae~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~- 311 (1023)
..+||++|+.++.. .+..+.++.... ....+++|++|.++++|.++++.+.|.+.|+.++.
T Consensus 253 -----------~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~ 319 (419)
T 4a2a_A 253 -----------FEESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAK 319 (419)
T ss_dssp -----------HHHHHHHHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------HHHHHHHHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34899999998752 345677765432 45689999999999999999999999999999997
Q ss_pred -----CccCcCeEEEEcCCCCcHHHHHHHHHHcCCcccccc-----------------CCCchhHHhHHHHHHHHH
Q psy6736 312 -----DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS-----------------INPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 312 -----~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~-----------------~~pd~aVa~GAa~~a~~l 365 (1023)
....++.|+|+||+|++|.|++.+++.| +.++... .+|..++|.|.++++...
T Consensus 320 ~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~-g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 320 IVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp C--------TTCEEEESGGGGSTTHHHHHHHHH-TSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred cccccccccCCEEEEECchhchhhHHHHHHHHH-CCCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 3456899999999999999999999999 5544322 388999999999988643
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=223.15 Aligned_cols=223 Identities=18% Similarity=0.169 Sum_probs=153.9
Q ss_pred ccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHH--------------------HHHHHHHHHHc
Q psy6736 82 AVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISS--------------------VKSTKDSGTIA 141 (1023)
Q Consensus 82 ~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~q--------------------r~~l~~Aa~~A 141 (1023)
.++++++.+ .++..++++++.++.+++|.+| +.+.+ .+++++|++.|
T Consensus 97 ~v~~~el~~-----------~i~~ea~~~~~~~~~~~vid~~--~~~~~~~~~~~~~~~v~~va~~~~~v~~~~~~~~~a 163 (377)
T 2ych_A 97 KMPLKEMEE-----------AVRWEAERYIPFPIDEVVLDFA--PLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGA 163 (377)
T ss_dssp CCCHHHHHH-----------HHHHHHGGGCSSCC-CEEEEEE--ESSCGGGSCTTSEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred CCCHHHHHH-----------HHHHHHhhcCCCChhHceEEEE--EeCCCCCCCCcceeEEEEEEecHHHHHHHHHHHHHC
Confidence 567777742 2334788889999999999998 33332 38899999999
Q ss_pred CCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHH
Q psy6736 142 GLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 221 (1023)
Q Consensus 142 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~ 221 (1023)
|+++..++.||+|||++|+..... ..+..++|+|+||||||+++++. +.+. ..++..+||.+||+.
T Consensus 164 Gl~~~~i~~ep~Aaa~~~~~~~~~---------~~~~~~~vvDiGggttdi~i~~~--g~~~---~~~~~~~GG~~i~~~ 229 (377)
T 2ych_A 164 GLVPVVLDVKPFAGLYPLEARLAE---------EPDRVFLVLDIGAESTSLVLLRG--DKPL---AVRVLTLSGKDFTEA 229 (377)
T ss_dssp TCEEEEEEEHHHHTTGGGHHHHHT---------STTCEEEEEEECSSCEEEEEEET--TEEE---EEEEESCSHHHHHHH
T ss_pred CCceEEEecchHHHHHHHHhhccc---------ccCCeEEEEEECCCcEEEEEEEC--CEEE---EEEeeechHHHHHHH
Confidence 999999999999999998654321 14578999999999999999974 3322 245678999999999
Q ss_pred HHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHH
Q psy6736 222 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEP 301 (1023)
Q Consensus 222 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 301 (1023)
|++.+ +.+ ...||++|+.++.........+...+-......++|++|++++++.++++...
T Consensus 230 i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~ 290 (377)
T 2ych_A 230 IARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQE 290 (377)
T ss_dssp HHHHT--------TCC-----------HHHHHHHHHHTC-------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHh--------CCC-----------HHHHHHHHhhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 98732 221 34789999999864322111100011112345789999999999999999999
Q ss_pred HHHHHHHc--CCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCch
Q psy6736 302 VEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 352 (1023)
Q Consensus 302 i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~ 352 (1023)
|.+.|+.. +.....++.|+|+||+|++|.+++.+++.| +.++... ||++
T Consensus 291 i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l-~~~v~~~-~P~~ 341 (377)
T 2ych_A 291 LRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTL-GVNLEPV-NPWE 341 (377)
T ss_dssp HHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHH-TSEEEEC-CGGG
T ss_pred HHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHh-CCCeEec-Cchh
Confidence 99999853 566678999999999999999999999999 4554433 4433
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=182.22 Aligned_cols=119 Identities=61% Similarity=0.920 Sum_probs=108.4
Q ss_pred ccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCC
Q psy6736 830 VQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPA 909 (1023)
Q Consensus 830 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~ 909 (1023)
++++.+.|++|++||+++.+|.|.+||+||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|++
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 910 PRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 910 ~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
|+|.++|+|+|++|.||+|+|+|.+..||++.+++|.++
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 999999999999999999999999999999988887754
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=176.23 Aligned_cols=119 Identities=61% Similarity=0.920 Sum_probs=109.5
Q ss_pred eeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCC
Q psy6736 373 VQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPA 452 (1023)
Q Consensus 373 ~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~ 452 (1023)
++++.+.|++|++||+++.+|.|.+||+||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.+.++|++
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecC
Q psy6736 453 PRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 491 (1023)
Q Consensus 453 ~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~ 491 (1023)
|+|.++|+|+|++|.||+|+|++.+..||++..++++++
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 999999999999999999999999999999999999876
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=212.98 Aligned_cols=173 Identities=20% Similarity=0.329 Sum_probs=138.9
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++.++||||+||||||+++++.. .. . ..++..+||++||+.|++++.+++. .+.. +..||+
T Consensus 144 ~~~~~~lVvDiGggttdvsv~~~~--~~--~-~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~ 205 (344)
T 1jce_A 144 EEPSGNMVVDIGGGTTEVAVISLG--SI--V-TWESIRIAGDEMDEAIVQYVRETYR----VAIG---------ERTAER 205 (344)
T ss_dssp TSSSCEEEEEECSSCEEEEEEETT--EE--E-EEEEESCSHHHHHHHHHHHHHHHHC----EECC---------HHHHHH
T ss_pred CCCceEEEEEeCCCeEEEEEEEcC--CE--E-eeCCCCccChhHHHHHHHHHHHHhC----cccC---------HHHHHH
Confidence 346789999999999999999853 22 1 2356789999999999999987653 2221 357899
Q ss_pred HhhhcCCCce------eEEEEe--cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccc-ceEEEec
Q psy6736 712 AKRTLSSSTQ------ASIEID--SLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQI-HDIVLVG 780 (1023)
Q Consensus 712 ~K~~Ls~~~~------~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~i-~~V~LvG 780 (1023)
+|+.|+.... ..+.++ ++.+|.+..++|+|++|+++++|.++++.+.|.++|++++.. .+.+ +.|+|+|
T Consensus 206 ~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~G 285 (344)
T 1jce_A 206 VKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTG 285 (344)
T ss_dssp HHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEES
T ss_pred HHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEEC
Confidence 9999987542 244443 445677788999999999999999999999999999987532 2334 6899999
Q ss_pred CccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 781 GSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 781 G~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
|+|++|.|++.|++.| +.++....||++|||+||+++|+.++
T Consensus 286 G~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 286 GGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp GGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred ccccchHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 9999999999999999 46677788999999999999997543
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=207.39 Aligned_cols=227 Identities=17% Similarity=0.123 Sum_probs=164.9
Q ss_pred CCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHH-hccccccCccccccCCCCCcEEEEEEeCCceEEE
Q psy6736 115 DGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIA-YGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDV 192 (1023)
Q Consensus 115 ~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~-y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dv 192 (1023)
...+|||+|++|+..+|++|.+++ +.+|++.+.+++||+||+++ |..... . .... +.+|+|+||||||+
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~-~-------~~~~-~glVvDiG~gtt~v 177 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQV-G-------ERTL-TGTVIDSGDGVTHV 177 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTC-C-------SCCC-CEEEEEESSSCEEE
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhccccc-C-------CCCC-eEEEEEcCCCceEE
Confidence 457999999999999999999999 88999999999999999987 532110 0 0123 67999999999999
Q ss_pred EEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC---------
Q psy6736 193 SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST--------- 263 (1023)
Q Consensus 193 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~--------- 263 (1023)
+++. ++.. +....++..+||++||+.|.+++..++. ...... -...+|++|+.++...
T Consensus 178 ~~v~--~G~~-~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~ 244 (418)
T 1k8k_A 178 IPVA--EGYV-IGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNK 244 (418)
T ss_dssp EEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHH
T ss_pred EEeE--CCEE-cccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHh
Confidence 9985 3432 2222355789999999999999876532 111111 1235677887775432
Q ss_pred --------ceEEEEecccCCceeEEEecHHHH---HHHhHHHH------HHHHHHHHHHHHHcC--CCccCcCeEEEEcC
Q psy6736 264 --------QASIEIDSLFEGVDFYTSITRARF---EELNADLF------RGTMEPVEKSLRDAK--MDKAQIHDIVLVGG 324 (1023)
Q Consensus 264 --------~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~--~~~~~i~~V~LvGG 324 (1023)
...+.++....+....+++++++| |.+++|.+ ..+.+.|.+.|..+. +.+..++.|+|+||
T Consensus 245 ~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG 324 (418)
T 1k8k_A 245 YDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGG 324 (418)
T ss_dssp HHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESG
T ss_pred hcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCC
Confidence 134666655556667889999999 55555542 568899999998865 33455688999999
Q ss_pred CCCcHHHHHHHHHHcCC-----------------------ccccccCCCchhHHhHHHHHHH
Q psy6736 325 STRIPKVQKLLQDFFNG-----------------------KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 325 ~sr~p~v~~~l~~~f~~-----------------------~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
+|++|.++++|++.++. .++..+.+|..++.+||+++|.
T Consensus 325 ~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 325 STMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp GGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 99999999998876521 1223345778999999999985
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=202.24 Aligned_cols=214 Identities=17% Similarity=0.191 Sum_probs=152.4
Q ss_pred CcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSI 194 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 194 (1023)
..++||+|++++..+|+++.+++ +.+|++.+.+++||+|||++|+. .+.+|+|+||||||++.
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~----------------~~~lVvDiG~gtt~v~~ 164 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR----------------TTGIVLDSGDGVTHNVP 164 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC----------------SSEEEEEECSSCEEEEE
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC----------------CeEEEEEcCCCceEEeE
Confidence 46999999999999999888765 88899999999999999999864 24699999999999877
Q ss_pred EEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHc---------------
Q psy6736 195 LTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL--------------- 259 (1023)
Q Consensus 195 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~L--------------- 259 (1023)
+. ++. .+....+...+||+++|+.|.+++..+. +........ ..+|++|+.+
T Consensus 165 v~--~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~-------~~~e~iK~~~~~v~~~~~~e~~~~~ 231 (375)
T 2fxu_A 165 IY--EGY-ALPHAIMRLDLAGRDLTDYLMKILTERG---YSFVTTAER-------EIVRDIKEKLCYVALDFENEMATAA 231 (375)
T ss_dssp EE--TTE-ECGGGCEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHH-------HHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred eE--CCE-EeccceEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHH-------HHHHHHHHHHHhhcccHHHHHHhhc
Confidence 64 453 2222234578999999999999988651 111101111 2334444443
Q ss_pred -CCCCceEEEEecccCCceeEEEecHHHH---HHHhHHH-----HHHHHHHHHHHHHHcC--CCccCcCeEEEEcCCCCc
Q psy6736 260 -SSSTQASIEIDSLFEGVDFYTSITRARF---EELNADL-----FRGTMEPVEKSLRDAK--MDKAQIHDIVLVGGSTRI 328 (1023)
Q Consensus 260 -s~~~~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~V~LvGG~sr~ 328 (1023)
+......+.++ +|. .++++++.| |.+++|. ...+.+.|.+.|..+. +....++.|+|+||+|++
T Consensus 232 ~~~~~~~~~~lp---dg~--~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~ 306 (375)
T 2fxu_A 232 SSSSLEKSYELP---DGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY 306 (375)
T ss_dssp HCSTTCEEEECT---TSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred ccCccCeEEECC---CCC--EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCC
Confidence 32223333332 332 467888877 3444543 3567888888888663 223446889999999999
Q ss_pred HHHHHHHHHHcCC-------ccccccCCCchhHHhHHHHHHH
Q psy6736 329 PKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 329 p~v~~~l~~~f~~-------~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
|.++++|++.+.. .++..+.||+.++++||+++|.
T Consensus 307 pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp TTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 9999999987731 3444567999999999999997
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-18 Score=187.69 Aligned_cols=228 Identities=12% Similarity=0.119 Sum_probs=149.1
Q ss_pred cccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCC-CCHH--HH--HHHHHH------------HHHcCC
Q psy6736 81 KAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAY-FNIS--SV--KSTKDS------------GTIAGL 143 (1023)
Q Consensus 81 ~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~-~~~~--qr--~~l~~A------------a~~AGl 143 (1023)
..+++..+.+.+ ..|+. +.. .+.++ ++|+++|.. |... || +++.+- ++.+++
T Consensus 72 ~~~~~~~l~~i~--------~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 140 (320)
T 2zgy_A 72 WQYSDVNVVAVH--------HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTI 140 (320)
T ss_dssp GGGSHHHHHHHH--------HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEE
T ss_pred ccchHHHHHHHH--------HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEE
Confidence 356777665543 24432 211 22333 699999976 6531 22 222221 234456
Q ss_pred ceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHH
Q psy6736 144 NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 223 (1023)
Q Consensus 144 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 223 (1023)
..+.++.||.||+++|..... ++..++|+|+||||||+++++ ++.+.+.+.+++..+||.+||+.|+
T Consensus 141 ~~v~~~~e~~aa~~~~~~~~~-----------~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~ 207 (320)
T 2zgy_A 141 KDVKVMPESIPAGYEVLQELD-----------ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVK 207 (320)
T ss_dssp EEEEEEESSHHHHHHHHHHSC-----------TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHH
T ss_pred EEEEEecCcHHHHHhhhcccc-----------CCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHH
Confidence 788999999999998864322 467899999999999999998 4444566667778999999999999
Q ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHHHHH-hHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHH
Q psy6736 224 NHFVQEFKRKYKKDLTTNKRALRRLRTACERA-KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPV 302 (1023)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~-K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 302 (1023)
+++.++ +.++. . ..+|++ |..- ... ......+ ..-..+++.+++++.++++.+.|
T Consensus 208 ~~l~~~-----~~~i~--~-------~~ae~~lk~~~---~~~--~~~~~i~-----~~~~~~~~~~~i~~~~~~~~~~i 263 (320)
T 2zgy_A 208 DALSLA-----RTKGS--S-------YLADDIIIHRK---DNN--YLKQRIN-----DENKISIVTEAMNEALRKLEQRV 263 (320)
T ss_dssp HHTTCC-----SBGGG--H-------HHHHHHHHTTT---CHH--HHHHHSS-----SSCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-----CCCCC--H-------HHHHHHHHHhh---hhh--cccceec-----CchhhHHHHHHHHHHHHHHHHHH
Confidence 988642 22221 1 134444 3220 000 0000000 01134566667777777777777
Q ss_pred HHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCc--cccccCCCchhHHhHHHHHH
Q psy6736 303 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK--ELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 303 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~--~i~~~~~pd~aVa~GAa~~a 362 (1023)
.+.+++ ..+++.|+|+||+|++ +++.|++.|+.. ++....||++|+|+||++++
T Consensus 264 ~~~i~~----~~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 264 LNTLNE----FSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHTT----CCCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHh----hcCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 777655 2568999999999997 999999999543 56778899999999999875
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-16 Score=176.76 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=126.7
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|||+||||||+++++ ++.+... ++..+||++||+.|+..+. .....||+
T Consensus 203 ~~~~gv~vvDiGggttdisi~~--~g~~~~~---~~i~~GG~~it~dIa~~l~-------------------~~~~~AE~ 258 (419)
T 4a2a_A 203 EKDRGVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPVGMKHVIKDVSAVLD-------------------TSFEESER 258 (419)
T ss_dssp HHHHCEEEEEECSSSEEEEEEE--TTEEEEE---EEESCCHHHHHHHHHHHHT-------------------CCHHHHHH
T ss_pred cccCCEEEEEECCCcEEEEEEE--CCEEEEE---EecccHHHHHHHHHHHHHC-------------------CCHHHHHH
Confidence 3456799999999999999987 6665543 3478999999999986431 12457899
Q ss_pred HhhhcCC-----CceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------ccccceEEEec
Q psy6736 712 AKRTLSS-----STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD------KAQIHDIVLVG 780 (1023)
Q Consensus 712 ~K~~Ls~-----~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~i~~V~LvG 780 (1023)
+|+.++. ..+..+.++.... ....+++|++|.++++|.++++.+.+++.|+.++.+ ...++.|+|+|
T Consensus 259 iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtG 336 (419)
T 4a2a_A 259 LIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 336 (419)
T ss_dssp HHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEES
T ss_pred HHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEEC
Confidence 9998864 2345677765432 456899999999999999999999999999999983 45689999999
Q ss_pred CccCcHHHHHHHHHhhcCcccC--C---------------CCCCccceecchHHHHHHH
Q psy6736 781 GSTRIPKVQKLLQDFFNGKELN--K---------------SINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 781 G~srip~v~~~l~~~f~~~~~~--~---------------~~~p~~aVa~GAa~~a~~l 822 (1023)
|+|++|.+++++++.|+ .++. . ..+|..++|.|.++++...
T Consensus 337 G~s~lpgl~e~~~~~~g-~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 337 GGAKIPRINELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp GGGGSTTHHHHHHHHHT-SCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred chhchhhHHHHHHHHHC-CCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 99999999999999994 3332 1 1488999999999988543
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-14 Score=161.19 Aligned_cols=155 Identities=22% Similarity=0.284 Sum_probs=102.8
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|+|+||||||+++++ .+.+.. .++..+||++||+.|++. ++.+ +..||+
T Consensus 188 ~~~~~~~vvDiGggttdi~i~~--~g~~~~---~~~~~~GG~~i~~~i~~~--------~~~~-----------~~~aE~ 243 (377)
T 2ych_A 188 EPDRVFLVLDIGAESTSLVLLR--GDKPLA---VRVLTLSGKDFTEAIARS--------FNLD-----------LLAAEE 243 (377)
T ss_dssp STTCEEEEEEECSSCEEEEEEE--TTEEEE---EEEESCSHHHHHHHHHHH--------TTCC-----------HHHHHH
T ss_pred ccCCeEEEEEECCCcEEEEEEE--CCEEEE---EEeeechHHHHHHHHHHH--------hCCC-----------HHHHHH
Confidence 3457799999999999999987 554432 355789999999999872 2221 357899
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCccccceEEEecCccCcHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDIVLVGGSTRIPKVQ 789 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~LvGG~srip~v~ 789 (1023)
+|+.++.............+-......++|++|++++++.++++...|++.|+. ++.....++.|+|+||+|++|.++
T Consensus 244 ~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~ 323 (377)
T 2ych_A 244 VKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLA 323 (377)
T ss_dssp HHHHTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHH
T ss_pred HHhhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHH
Confidence 999987543211110000111123457999999999999999999999999995 356667899999999999999999
Q ss_pred HHHHHhhcCcccCCCCCCcccee
Q psy6736 790 KLLQDFFNGKELNKSINPDEAVA 812 (1023)
Q Consensus 790 ~~l~~~f~~~~~~~~~~p~~aVa 812 (1023)
+.+++.|+ .++... ||+++|+
T Consensus 324 ~~l~~~l~-~~v~~~-~P~~~v~ 344 (377)
T 2ych_A 324 SLLTDTLG-VNLEPV-NPWEAVA 344 (377)
T ss_dssp HHHHHHHT-SEEEEC-CGGGGSB
T ss_pred HHHHHHhC-CCeEec-Cchhhcc
Confidence 99999994 444433 6666554
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=162.02 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=116.9
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhcc--CcchhHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK--DLTTNKRALRRLRTACE 710 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~e 710 (1023)
++.+++|||+||||||++++++.++. .+.+++++.++||++|++.|++++.+++. . ++.. ..+|
T Consensus 188 ~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g----~~~~i~~---------~~~e 253 (346)
T 2fsj_A 188 QPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETG----FVVPFDL---------AQEA 253 (346)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCCHHH---------HHHH
T ss_pred cCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhC----CCcCCCH---------HHHh
Confidence 34789999999999999999987776 66666778899999999999988776653 3 2210 1122
Q ss_pred HHhhhcCCCceeEEEEecccCCcceEEEecHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHH
Q psy6736 711 RAKRTLSSSTQASIEIDSLFEGVDFYTSITRARF-EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 789 (1023)
Q Consensus 711 ~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 789 (1023)
... .+.+ .+. .++++++ +++++++++++.+.+++.|+++ .++++.|+|+||+|++ ++
T Consensus 254 -------~~~--~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~IvL~GGga~l--l~ 311 (346)
T 2fsj_A 254 -------LSH--PVMF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IG 311 (346)
T ss_dssp -------TTS--CEEE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HG
T ss_pred -------cCC--eEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccEEEEECCcHHH--HH
Confidence 011 1222 232 3569999 9999999999999999999876 5678999999999999 99
Q ss_pred HHHHHhhcCccc-CCCCCCccceecchHHHHH
Q psy6736 790 KLLQDFFNGKEL-NKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 790 ~~l~~~f~~~~~-~~~~~p~~aVa~GAa~~a~ 820 (1023)
+.|++.|+...+ ....||++|+|+|+..++.
T Consensus 312 ~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 312 DRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 999999963322 1267999999999998763
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=154.08 Aligned_cols=132 Identities=19% Similarity=0.335 Sum_probs=112.2
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhhc
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 716 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 716 (1023)
.+|+|+||||+|++++. .+.+. ...+..+||.+||+.+.+++. . -...||++|+.+
T Consensus 141 ~~viDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~--------~-----------~~~~ae~~k~~~ 196 (272)
T 3h1q_A 141 GIVVDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYK--------I-----------PFEEAETIKKDF 196 (272)
T ss_dssp EEEEEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHSS
T ss_pred EEEEEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhC--------C-----------CHHHHHHHHHhc
Confidence 59999999999999987 55433 235678999999999988763 1 124678889887
Q ss_pred CCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhh
Q psy6736 717 SSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 796 (1023)
Q Consensus 717 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f 796 (1023)
+ +++++++++.+.++++...+.+.++..+ +++.|+|+||+|++|.+++.+++.|
T Consensus 197 ~----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l 250 (272)
T 3h1q_A 197 S----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL 250 (272)
T ss_dssp T----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh
Confidence 6 6899999999999999999999998654 4789999999999999999999999
Q ss_pred cCcccCCCCCCccceecchHHHH
Q psy6736 797 NGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 797 ~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+.++..+.||++++|+|||++|
T Consensus 251 -~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 251 -GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp -SSCCBCCSSGGGHHHHHHHTTC
T ss_pred -CCCccccCChHHHHHHHHHhcC
Confidence 6778888999999999999864
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=159.56 Aligned_cols=209 Identities=14% Similarity=0.165 Sum_probs=139.6
Q ss_pred CcceEecCCCCCHHHH-HHHHHHHHHcCC------------ceeeeecchHHHHHHhccccccCccccccCCCCCcEEEE
Q psy6736 116 GQNEGLIPAYFNISSV-KSTKDSGTIAGL------------NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLI 182 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr-~~l~~Aa~~AGl------------~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV 182 (1023)
..+++++|..+...+| +++++++..++- +.+.++.||.||++++......... . .++..++|
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~--~---~~~~~~~v 188 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFK--A---FTEGKYSV 188 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECH--H---HHTCEEEE
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCcccc--c---cccCcEEE
Confidence 3789999988777777 589998876543 4678999999999998764321000 0 03678999
Q ss_pred EEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCC
Q psy6736 183 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 262 (1023)
Q Consensus 183 ~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~ 262 (1023)
+|+||||||++++ .++.+. ...++...+||..+++++.+++.+++. +..+. .. ..++.+.
T Consensus 189 vDiGggTtd~~v~--~~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~~-------~i~~g~~----- 248 (355)
T 3js6_A 189 LDFGSGTTIIDTY--QNMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--PR-------MIEKGLE----- 248 (355)
T ss_dssp EEECSSCEEEEEE--ETTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--HH-------HHHSCCC-----
T ss_pred EEeCCCcEEEEEE--cCCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--HH-------HHhcCCc-----
Confidence 9999999999998 344331 111233679999999999999988652 11121 11 1111111
Q ss_pred CceEEEEecccCCce--eEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHH--HHHHHHHH
Q psy6736 263 TQASIEIDSLFEGVD--FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK--VQKLLQDF 338 (1023)
Q Consensus 263 ~~~~i~i~~~~~~~~--~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~--v~~~l~~~ 338 (1023)
.. ..+.+ -...+ .+.+++.+++++++|.+.|++.+.+ +..++.|+|+||++.++. |++.|++.
T Consensus 249 ----~~----~~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~ 315 (355)
T 3js6_A 249 ----YK----QCKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDV 315 (355)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSC
T ss_pred ----cc----cccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHH
Confidence 00 00000 01122 2356777778888888887777753 466899999999999998 99999998
Q ss_pred cCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 339 FNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 339 f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
|+.. .||..|+|+|+..++..+.+
T Consensus 316 ~~~~-----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 316 FEKA-----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp EECC-----SSGGGHHHHHHHHHHHHHHH
T ss_pred CCCC-----CCcHHHHHHHHHHHHHHHHh
Confidence 8432 79999999999999877654
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-14 Score=155.01 Aligned_cols=219 Identities=17% Similarity=0.146 Sum_probs=138.8
Q ss_pred cCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhccc
Q psy6736 83 VSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLD 162 (1023)
Q Consensus 83 ~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~ 162 (1023)
..+.++++.+| +++++.+. ....++........ ...++...+..|+||+|+++++...
T Consensus 33 g~~~e~a~~vl-------~~~~~~a~----~~~~~~~~~a~t~~-----------~~~a~~~~~~~Vne~~aha~a~~~~ 90 (276)
T 4ehu_A 33 GTGTTGPSRVL-------EKLYGKTG----LAREDIKKVVVTGY-----------GRMNYSDADKQISELSCHARGVNFI 90 (276)
T ss_dssp CTTSSHHHHHH-------HHHHHHHC----CCGGGEEEEEEEST-----------TGGGCCSCSEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-------HHHHHHCC----CcchhccccccCch-----------HHHHhhCCCcccchHHHHHHHHHHh
Confidence 34556777777 77777663 33333322211111 1236778889999999999887554
Q ss_pred cccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccH
Q psy6736 163 KKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNK 242 (1023)
Q Consensus 163 ~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~ 242 (1023)
.. ....|+|+|||+++++++. .++.++....+++...|+.+|++.+++++.-.|....
T Consensus 91 ~~-------------~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~-------- 148 (276)
T 4ehu_A 91 IP-------------ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELG-------- 148 (276)
T ss_dssp ST-------------TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHH--------
T ss_pred CC-------------CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChhhhH--------
Confidence 32 2347899999999999885 4677888888888999999999999888754433110
Q ss_pred HHHHHHHHHHHHHhH--HcCCCCceEEE---EecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcC
Q psy6736 243 RALRRLRTACERAKR--TLSSSTQASIE---IDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIH 317 (1023)
Q Consensus 243 ~~~~~L~~~ae~~K~--~Ls~~~~~~i~---i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 317 (1023)
.+ +..++. .++.....-.. +.....+ ...++++..+.+.+.+.+...... ..+++
T Consensus 149 ----~~---~~~a~~~~~i~~~~~~f~~s~~~~~~~~~---------~~~~di~a~~~~~v~~~l~~~~~~----~~~~~ 208 (276)
T 4ehu_A 149 ----SI---SMNSQNEVSISSTCTVFAESEVISHLSEN---------AKIEDIVAGIHTSVAKRVSSLVKR----IGVQR 208 (276)
T ss_dssp ----HH---HTTCSSCCCCCCCSHHHHHHHHHHHHHTT---------CCHHHHHHHHHHHHHHHHHHHHHH----HCCCS
T ss_pred ----HH---HhcCCCCCCcCCccchhhhhHHHHhhhcc---------ccHHHHHHHHHHHHHHHHHHHHHh----cccCC
Confidence 00 000000 00000000000 0000001 112345555555555555444433 24568
Q ss_pred eEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 318 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 318 ~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
.|+|+||.+++|.|++.+++.| +.++..+.||++++|+|||++|....
T Consensus 209 ~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp SEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred eEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 8999999999999999999999 78888899999999999999996544
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=162.01 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=88.9
Q ss_pred CcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEE
Q psy6736 116 GQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSI 194 (1023)
Q Consensus 116 ~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 194 (1023)
..++||+|++++..+|+++.+++ +.+|++.+.+++||+||+++++. .+.+|+|+|+|||+++.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~----------------~~~lVVDiG~g~T~v~p 168 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL----------------LTGVVVDSGDGVTHICP 168 (394)
T ss_dssp -----------------------------------------------------------------CCEEEECSSCEEEEC
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC----------------ceEEEEEcCCCceEeee
Confidence 45999999999999999988865 78899999999999999998864 23599999999999987
Q ss_pred EEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhHHcCCCC-----------
Q psy6736 195 LTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST----------- 263 (1023)
Q Consensus 195 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~----------- 263 (1023)
+. ++.. +........+||+++|+.|.+++..+. +........ ..+|.+|+.+....
T Consensus 169 v~--~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~ 235 (394)
T 1k8k_B 169 VY--EGFS-LPHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLAL 235 (394)
T ss_dssp EE--TTEE-CSTTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred eE--CCEE-cccceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhc
Confidence 74 3432 111123368999999999999987641 111111111 23455555543221
Q ss_pred -----ceEEEEecccCCceeEEEecHHHHH---HHhHHH-----HHHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCc
Q psy6736 264 -----QASIEIDSLFEGVDFYTSITRARFE---ELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRI 328 (1023)
Q Consensus 264 -----~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~ 328 (1023)
...+.+ .+|. .++|+++.|. -+++|. ...+.+.|.+.|..+... ..-.+.|+|+||+|.+
T Consensus 236 ~~~~~~~~~~l---pdg~--~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~ 310 (394)
T 1k8k_B 236 ETTVLVESYTL---PDGR--IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMY 310 (394)
T ss_dssp HCSTTCEEEEC---TTSC--EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCS
T ss_pred cCCcCceEEEC---CCCC--EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCccccc
Confidence 112222 2333 4667777773 334442 245778888888877533 3345779999999999
Q ss_pred HHHHHHHHHHcCC------------------ccccccCCCchhHHhHHHHHHH
Q psy6736 329 PKVQKLLQDFFNG------------------KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 329 p~v~~~l~~~f~~------------------~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
|.+.++|++.+.. ..+..+.+|..++.+||+++|.
T Consensus 311 ~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 311 PGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred ccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 9999999877621 1223355778999999999886
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=152.30 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=109.9
Q ss_pred CCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy6736 630 EGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 709 (1023)
Q Consensus 630 ~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 709 (1023)
+.+++..++|+|+||||+|+++++ ++.+.+.++.++.++||.+||+.|++++.++ +.++. . ..+
T Consensus 159 ~~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i~--~-------~~a 222 (320)
T 2zgy_A 159 ELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKGS--S-------YLA 222 (320)
T ss_dssp HSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGGG--H-------HHH
T ss_pred cccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCCC--H-------HHH
Confidence 335567899999999999999998 5666677777888999999999999988642 22221 1 123
Q ss_pred HHH-hhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHH
Q psy6736 710 ERA-KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 788 (1023)
Q Consensus 710 e~~-K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v 788 (1023)
|++ |..- ... ......+ ..-+++++.+++++.++++.+.+.+.+++. .+++.|+|+||+|++ +
T Consensus 223 e~~lk~~~---~~~--~~~~~i~-----~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l--l 286 (320)
T 2zgy_A 223 DDIIIHRK---DNN--YLKQRIN-----DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--I 286 (320)
T ss_dssp HHHHHTTT---CHH--HHHHHSS-----SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--H
T ss_pred HHHHHHhh---hhh--cccceec-----CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--H
Confidence 333 3320 000 0000000 011345666677777777777777766652 568999999999998 9
Q ss_pred HHHHHHhhcCc--ccCCCCCCccceecchHHHH
Q psy6736 789 QKLLQDFFNGK--ELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 789 ~~~l~~~f~~~--~~~~~~~p~~aVa~GAa~~a 819 (1023)
++.|++.|+.. ++....||++|+|+||+++|
T Consensus 287 ~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 287 CDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999999543 46678899999999999876
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-12 Score=116.48 Aligned_cols=85 Identities=67% Similarity=1.096 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 516 KQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKL 595 (1023)
Q Consensus 516 ~~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~ 595 (1023)
+++++.++||.||+|+|.++..|.++.+...++++++++|.+.++++.+||+.+.+++.++|+.++++|++++.||..|+
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999876788999999999999999999999999878899999999999999999999999
Q ss_pred HcccC
Q psy6736 596 YQGSG 600 (1023)
Q Consensus 596 ~e~~g 600 (1023)
+..+|
T Consensus 83 y~~~~ 87 (113)
T 3lof_A 83 YQGAG 87 (113)
T ss_dssp HHC--
T ss_pred HHhcc
Confidence 97644
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=147.76 Aligned_cols=175 Identities=20% Similarity=0.271 Sum_probs=114.9
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHH-----
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC----- 709 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~----- 709 (1023)
.+.||+|+||||||++.+. +|. .+....+...+||+++|+.|.+++..+. +............+|+..+
T Consensus 148 ~~~lVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~~~e~iK~~~~~v~~ 221 (375)
T 2fxu_A 148 TTGIVLDSGDGVTHNVPIY--EGY-ALPHAIMRLDLAGRDLTDYLMKILTERG---YSFVTTAEREIVRDIKEKLCYVAL 221 (375)
T ss_dssp SSEEEEEECSSCEEEEEEE--TTE-ECGGGCEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHHHHHHHHHHHHCCCCS
T ss_pred CeEEEEEcCCCceEEeEeE--CCE-EeccceEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHhhcc
Confidence 3689999999999987764 663 3333345678999999999999987651 1111111222233333322
Q ss_pred ----HHHhhhcCCCceeEEEEecccCCcceEEEecHHHHH---HHHHHH-----HHHHHHHHHHHHHHcC--CCccccce
Q psy6736 710 ----ERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE---ELNADL-----FRGTMEPVEKSLRDAK--MDKAQIHD 775 (1023)
Q Consensus 710 ----e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~---~~~~~~-----~~~~~~~i~~~l~~~~--~~~~~i~~ 775 (1023)
+..|..++......+.++ ++. .+.++++.|. .+++|. ...+.+.|.+.|..+. +....++.
T Consensus 222 ~~~~e~~~~~~~~~~~~~~~lp---dg~--~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~ 296 (375)
T 2fxu_A 222 DFENEMATAASSSSLEKSYELP---DGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYAN 296 (375)
T ss_dssp SHHHHHHHHHHCSTTCEEEECT---TSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTC
T ss_pred cHHHHHHhhcccCccCeEEECC---CCC--EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhC
Confidence 122222333334444443 232 5788988884 333432 2457788888888653 23445688
Q ss_pred EEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHH
Q psy6736 776 IVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 776 V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
|+|+||+|++|.++++|++.++. .++..+.||+.+|++||+++|.
T Consensus 297 IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 297 NVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp EEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred cEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 99999999999999999998742 2344567999999999999997
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=148.91 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=122.0
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhhh
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 715 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 715 (1023)
+.||+|+||||||++++. +|. .+....++..+||+++|+.|.+++.+++. ......+ ...+|++|+.
T Consensus 164 ~glVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~~-------~~~~e~iK~~ 230 (418)
T 1k8k_A 164 TGTVIDSGDGVTHVIPVA--EGY-VIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQS-------LETAKAVKER 230 (418)
T ss_dssp CEEEEEESSSCEEEEEEE--TTE-ECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGGH-------HHHHHHHHHH
T ss_pred eEEEEEcCCCceEEEEeE--CCE-EcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHHH-------HHHHHHHHHh
Confidence 679999999999999986 554 23333456789999999999999876531 1111111 2356677776
Q ss_pred cCCCc-----------------eeEEEEecccCCcceEEEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcC--
Q psy6736 716 LSSST-----------------QASIEIDSLFEGVDFYTSITRARF---EELNADLF------RGTMEPVEKSLRDAK-- 767 (1023)
Q Consensus 716 Ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~~---~~~~~~~~------~~~~~~i~~~l~~~~-- 767 (1023)
++... ...+.+++...+....+++++++| |.++.|.+ ..+.+.|.+.|..+.
T Consensus 231 ~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~ 310 (418)
T 1k8k_A 231 YSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPID 310 (418)
T ss_dssp HCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGG
T ss_pred hchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHH
Confidence 65321 135666665556667889999999 44555432 568889999998764
Q ss_pred CCccccceEEEecCccCcHHHHHHHHHhhcCc-----------------------ccCCCCCCccceecchHHHHH
Q psy6736 768 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-----------------------ELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 768 ~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~-----------------------~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
+..+.++.|+|+||+|++|.+++.|++.++.. ++..+.+|..++.+||+++|.
T Consensus 311 ~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 311 VRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp GTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 44566789999999999999999998766321 123345778999999999985
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=144.61 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=138.0
Q ss_pred CcceEecCCCCC--HHHHHHHHHHHHHc--------C------CceeeeecchHHHHHHhccccccCccccccCCCCCcE
Q psy6736 116 GQNEGLIPAYFN--ISSVKSTKDSGTIA--------G------LNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERN 179 (1023)
Q Consensus 116 ~~~vitVPa~~~--~~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~ 179 (1023)
..+++++|..+- ..+|+.+++....- | ++.+.++.||.+|.+.+. .. .+...
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~~-----------~~~~~ 173 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-EN-----------FKNKN 173 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-CC-----------CTTCE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-hh-----------hccCC
Confidence 368999995443 24677777765521 1 134678899998877652 11 15678
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHH-HHHhhhccCccccHHHHHHHHHHHHHHhHH
Q psy6736 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ-EFKRKYKKDLTTNKRALRRLRTACERAKRT 258 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~ae~~K~~ 258 (1023)
++|+|+||||||+++++ .+.+ +...++...+||..+++.|.+++.. ++. ..+... .+|++|+.
T Consensus 174 v~vvDiGggTtd~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g----~~i~~~---------~~e~i~~~ 237 (329)
T 4apw_A 174 VAVIDFGGLNMGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTDLNNG----NLITNE---------QAESALNN 237 (329)
T ss_dssp EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSC----SCTTSB---------TTTTCSSS
T ss_pred EEEEEeCCCcEEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHhhccC----CCCCHH---------HHHHHHhc
Confidence 99999999999999998 3433 2222345679999999999988776 443 222111 23444432
Q ss_pred cCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHH
Q psy6736 259 LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 338 (1023)
Q Consensus 259 Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~ 338 (1023)
. . . ..+.+. ..+..+++++.++++++.|.+.+++. +..++.++.|+|+||++.+ +.+.|++.
T Consensus 238 -g-~--~-------~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~ 299 (329)
T 4apw_A 238 -G-Y--M-------KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKT 299 (329)
T ss_dssp -C-S--S-------CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHH
T ss_pred -C-C--c-------ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHH
Confidence 1 0 0 001111 13456777777777777777777665 3456668999999999998 66999999
Q ss_pred cCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 339 FNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 339 f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
|+ .++....||..|+|+|+..++....
T Consensus 300 ~~-~~v~v~~~P~~a~a~G~~~~~~~k~ 326 (329)
T 4apw_A 300 YP-NNSIITNNSQWTTCEGLYKVAVAKY 326 (329)
T ss_dssp ST-TCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred cC-CCCEecCCChhhHHHHHHHHHhhhh
Confidence 94 4566778999999999999886654
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-12 Score=143.66 Aligned_cols=206 Identities=22% Similarity=0.226 Sum_probs=139.2
Q ss_pred ceEecCCCC--------------CHHHHHHHHHHHHHc-CC--ceeeeecchHHHHHHhccccccCccccccCCCCCcEE
Q psy6736 118 NEGLIPAYF--------------NISSVKSTKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNV 180 (1023)
Q Consensus 118 ~vitVPa~~--------------~~~qr~~l~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~v 180 (1023)
++..+|..| ...+-+.+.+|.+.+ |+ ++-. .||.||+++...... .+..+
T Consensus 343 Vlh~lP~efslD~~~GIahmVt~~~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-----------~eLGv 409 (610)
T 2d0o_A 343 VTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-----------TTRPL 409 (610)
T ss_dssp CBTCSSCCEEEEEEEEEEEEEECSCCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-----------CCSSE
T ss_pred eeeecCceeEEcCCcCchheeecCHHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-----------CcCCe
Confidence 455677777 334568899999999 99 7767 999999998877655 67789
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH-HHhhhccCccccHHHHHHHHHHHHHHhHHc
Q psy6736 181 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE-FKRKYKKDLTTNKRALRRLRTACERAKRTL 259 (1023)
Q Consensus 181 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~ae~~K~~L 259 (1023)
+++||||||||+|++.-+.-.+. .....||++++..|..-|.-. +. .||++|+ .
T Consensus 410 aiIDmGGGTTd~sVf~~G~lv~a-----~~ip~gG~~VT~DIA~~Lgt~d~~-------------------~AErIK~-Y 464 (610)
T 2d0o_A 410 AILDLGAGSTDASIINPKGDIIA-----THLAGAGDMVTMIIARELGLEDRY-------------------LAEEIKK-Y 464 (610)
T ss_dssp EEEEECSSEEEEEEECTTCCEEE-----EEEECSHHHHHHHHHHHHTCCCHH-------------------HHHHHHH-S
T ss_pred EEEEeCCCcceEEEEcCCcEEEE-----EEeccchHHHHHHHHHHhCCCCHH-------------------HHHHhcc-c
Confidence 99999999999999876444331 224689999999998665433 32 7899998 5
Q ss_pred CCC----------CceEEEE--ecccCC---c------eeEEEecHHH--HHHHhHHHHHHHHHH--HHHHHHHcCC---
Q psy6736 260 SSS----------TQASIEI--DSLFEG---V------DFYTSITRAR--FEELNADLFRGTMEP--VEKSLRDAKM--- 311 (1023)
Q Consensus 260 s~~----------~~~~i~i--~~~~~~---~------~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~--- 311 (1023)
... ....+.+ +.+... . +.-..| +.. +|+ ++-+-+++.+. +..+|+..+.
T Consensus 465 G~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~ 542 (610)
T 2d0o_A 465 PLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSP 542 (610)
T ss_dssp CEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CceeecccccccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccC
Confidence 321 1223444 222110 1 112345 555 565 44444444433 2223554332
Q ss_pred --CccCcCeEEEEcCCCCcHHHHHHHHHHcCCccc-------cccCCCchhHHhHHHHHHH
Q psy6736 312 --DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-------NKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 312 --~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i-------~~~~~pd~aVa~GAa~~a~ 363 (1023)
...+|..|+|+||+|.++.+.++.++.|+.-++ ...-.|..|+|.|.++|.+
T Consensus 543 ~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 543 TGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp SSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred CCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 245779999999999999999999999944132 2234899999999998764
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-12 Score=142.97 Aligned_cols=193 Identities=20% Similarity=0.181 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHc-CC--ceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEE
Q psy6736 130 SVKSTKDSGTIA-GL--NVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKS 206 (1023)
Q Consensus 130 qr~~l~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~ 206 (1023)
+-+.+.+|.+.+ |+ ++-. .||.||+++...... .+..++++||||||||+|++.-+.-.+.
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-----------~elGvaiIDmGgGTTd~sVf~~g~lv~a--- 434 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-----------CAAPLAILDLGAGSTDAAIVNAEGQITA--- 434 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-----------CCSSEEEEEECSSEEEEEEECSSSCEEE---
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-----------CcCCeEEEEeCCCcceEEEEcCCcEEEE---
Confidence 346788999999 99 6666 999999998877655 6778999999999999999976554432
Q ss_pred ecCCCCccHHHHHHHHHHHHHHH-HHhhhccCccccHHHHHHHHHHHHHHhHHcCCC----------CceEEEE--eccc
Q psy6736 207 TAGDTHLGGEDFDNRMVNHFVQE-FKRKYKKDLTTNKRALRRLRTACERAKRTLSSS----------TQASIEI--DSLF 273 (1023)
Q Consensus 207 ~~~~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~ae~~K~~Ls~~----------~~~~i~i--~~~~ 273 (1023)
.....||++++..|..-|.-. +. .||++|+ .... ....+.+ +.+.
T Consensus 435 --~~ip~gG~~VT~DIA~~Lg~~d~~-------------------~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lg 492 (607)
T 1nbw_A 435 --VHLAGAGNMVSLLIKTELGLEDLS-------------------LAEAIKK-YPLAKVESLFSIRHENGAVEFFREALS 492 (607)
T ss_dssp --EEEECCHHHHHHHHHHHHTCSCHH-------------------HHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCC
T ss_pred --EEeccchHHHHHHHHHHhCCCCHH-------------------HHHHhcc-cCceeecccccccCCCCeEEEecCCCC
Confidence 224689999999998665433 32 7899998 4321 1223444 2221
Q ss_pred CC---c------eeEEEecHHH--HHHHhHHHHHHHHHH--HHHHHHHcCCC-----ccCcCeEEEEcCCCCcHHHHHHH
Q psy6736 274 EG---V------DFYTSITRAR--FEELNADLFRGTMEP--VEKSLRDAKMD-----KAQIHDIVLVGGSTRIPKVQKLL 335 (1023)
Q Consensus 274 ~~---~------~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~~-----~~~i~~V~LvGG~sr~p~v~~~l 335 (1023)
.. . +.-..| +.. +|+ ++-+-+++.+. +..+|+..+.. ..+|..|+|+||+|.++.+.++.
T Consensus 493 p~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA 570 (607)
T 1nbw_A 493 PAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLI 570 (607)
T ss_dssp GGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHH
T ss_pred cceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHH
Confidence 10 1 112344 455 555 44444444433 34447776653 34679999999999999999999
Q ss_pred HHHcCCccc-------cccCCCchhHHhHHHHHH
Q psy6736 336 QDFFNGKEL-------NKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 336 ~~~f~~~~i-------~~~~~pd~aVa~GAa~~a 362 (1023)
++.|+.-++ ...-.|..|+|.|.++|.
T Consensus 571 ~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 571 TEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp HHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred HHHhCcCCeEEecCCccccCCchHHHHHHHHHhh
Confidence 999943122 223489999999999865
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.4e-11 Score=109.83 Aligned_cols=87 Identities=60% Similarity=0.988 Sum_probs=74.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6736 517 QKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLY 596 (1023)
Q Consensus 517 ~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~ 596 (1023)
+|++.++||.||+|||+++..|.++.+...++++++++|...+.++.+||+.+.+++.++|+.++++|++++.||..|++
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999997655788999999999999999999999876668899999999999999999999988
Q ss_pred cccCCCC
Q psy6736 597 QGSGGAP 603 (1023)
Q Consensus 597 e~~g~~~ 603 (1023)
..+|+++
T Consensus 93 ~~~~~~~ 99 (120)
T 2p32_A 93 QSAGGAP 99 (120)
T ss_dssp CC-----
T ss_pred HhccCCC
Confidence 6554443
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.7e-11 Score=108.86 Aligned_cols=85 Identities=68% Similarity=1.125 Sum_probs=73.6
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHccc
Q psy6736 520 VISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599 (1023)
Q Consensus 520 ~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~ 599 (1023)
+.++||.||+|||.++..|.++++...++++++++|...+.++.+||+++.+++.++|+.++++|++++.||..|+++.+
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999997556888999999999999999999999866567889999999999999999999998755
Q ss_pred CCCCC
Q psy6736 600 GGAPG 604 (1023)
Q Consensus 600 g~~~~ 604 (1023)
|++++
T Consensus 82 ~~~~~ 86 (113)
T 1ud0_A 82 GGMPG 86 (113)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 54443
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=123.96 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=102.9
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh--
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR-- 714 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~-- 714 (1023)
..|+|+|||+++++++. .++.+++...+++...||.+|++.++.++.-.+.... .+ +..++.
T Consensus 95 ~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~------------~~---~~~a~~~~ 158 (276)
T 4ehu_A 95 RTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELG------------SI---SMNSQNEV 158 (276)
T ss_dssp CEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHH------------HH---HTTCSSCC
T ss_pred CeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChhhhH------------HH---HhcCCCCC
Confidence 47899999999999885 5778888889999999999999999887743332110 00 001111
Q ss_pred hcCCCceeEEEEecccCCcce-EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHH
Q psy6736 715 TLSSSTQASIEIDSLFEGVDF-YTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 793 (1023)
Q Consensus 715 ~Ls~~~~~~~~i~~~~~~~~~-~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~ 793 (1023)
.++..... +.. .++ ...-.....++++..+.+.+.+.+...... ...++.|+|+||.+++|.||+.++
T Consensus 159 ~i~~~~~~------f~~-s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~----~~~~~~vvl~GGva~n~~lr~~l~ 227 (276)
T 4ehu_A 159 SISSTCTV------FAE-SEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKR----IGVQRNVVMVGGVARNSGIVRAMA 227 (276)
T ss_dssp CCCCCSHH------HHH-HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCCCSSEEEESGGGGCHHHHHHHH
T ss_pred CcCCccch------hhh-hHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHh----cccCCeEEEecCccchHHHHHHHH
Confidence 01110000 000 000 000001112445555555555544444333 245788999999999999999999
Q ss_pred HhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 794 DFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 794 ~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
+.| +.++..+.||++++|+|||++|....
T Consensus 228 ~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 228 REI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 999 67888899999999999999996543
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=130.57 Aligned_cols=252 Identities=17% Similarity=0.093 Sum_probs=153.7
Q ss_pred ccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCc--CCcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHH
Q psy6736 78 ARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKV--DGQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTA 154 (1023)
Q Consensus 78 ~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~--~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~A 154 (1023)
.+.+.+..-+....++ +|+.. ..++.. -..++||.|...+..+|+.+.+.+ +.+|+..+.++.+|.+
T Consensus 94 i~~GvI~dwd~~e~iw-------~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vl 163 (427)
T 3dwl_A 94 IRHGQIENWDHMERFW-------QQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163 (427)
T ss_dssp EETTEECCHHHHHHHH-------HHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHH
T ss_pred cccCeeccHHHHHHHH-------HHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHH
Confidence 3444555555555555 44432 234432 246999999999999999998887 7899999999999999
Q ss_pred HHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhh
Q psy6736 155 AAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 234 (1023)
Q Consensus 155 Aal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~ 234 (1023)
|+++.+...... ....+-||+|+|+|+|+++.+. ++..-. .......+||+++|+.|.+++..+...
T Consensus 164 a~~a~G~~~~~~--------~~~~tglVVDiG~g~T~v~PV~--~G~~l~-~~~~rl~~gG~~lt~~L~~lL~~~~~~-- 230 (427)
T 3dwl_A 164 ALAASWTSSKVT--------DRSLTGTVVDSGDGVTHIIPVA--EGYVIG-SSIKTMPLAGRDVTYFVQSLLRDRNEP-- 230 (427)
T ss_dssp HHHGGGGSTTTC--------SCCCCEEEEEESSSCEEEEEEE--TTEECG-GGCEEESCCHHHHHHHHHHTTC-------
T ss_pred HHHhcCCccccc--------CCCceEEEEECCCCceEEEEEE--CCEEeh-hhheeccccHHHHHHHHHHHHHHcCCC--
Confidence 998877432100 0134579999999999999983 232211 001114799999999999988765431
Q ss_pred ccCccccHHHHHHHHHHHHHHhHHcCCCCce-----------EEEEe--cc--cCCceeEEEecHHHHH---HHhHHH--
Q psy6736 235 KKDLTTNKRALRRLRTACERAKRTLSSSTQA-----------SIEID--SL--FEGVDFYTSITRARFE---ELNADL-- 294 (1023)
Q Consensus 235 ~~~~~~~~~~~~~L~~~ae~~K~~Ls~~~~~-----------~i~i~--~~--~~~~~~~~~itr~~~e---~~~~~~-- 294 (1023)
..=...+|.+|+.+..-... ...+. .+ .+|....+++..+.|. -+++|-
T Consensus 231 -----------~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~ 299 (427)
T 3dwl_A 231 -----------DSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299 (427)
T ss_dssp --------------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGT
T ss_pred -----------chhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhc
Confidence 00112455566655432110 00010 01 2343345677777763 344542
Q ss_pred ----HHHHHHHHHHHHHHcCCC--ccCcCeEEEEcCCCCcHHHHHHHHHHc----C---------------C--cccccc
Q psy6736 295 ----FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----N---------------G--KELNKS 347 (1023)
Q Consensus 295 ----~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f----~---------------~--~~i~~~ 347 (1023)
...|.+.|.+.|.++... +.=...|+|+||+|.+|.+.++|++.+ + . .++..+
T Consensus 300 g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~ 379 (427)
T 3dwl_A 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISH 379 (427)
T ss_dssp CSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECC
T ss_pred CCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecC
Confidence 245778888888765432 111255999999999999999888654 1 1 123334
Q ss_pred CCCchhHHhHHHHHHH
Q psy6736 348 INPDEAVAYGAAVQAA 363 (1023)
Q Consensus 348 ~~pd~aVa~GAa~~a~ 363 (1023)
.++..++=.|++++|.
T Consensus 380 ~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 380 KRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CccccceecCceeecc
Confidence 5677899999999985
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=125.60 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=109.6
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
.++.+++|+|+||||+|++++. ++.+ +....+...+||..+++.|++++.+ .+++..+... .+|+
T Consensus 169 ~~~~~v~vvDiGggTtd~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~---~~~g~~i~~~---------~~e~ 233 (329)
T 4apw_A 169 FKNKNVAVIDFGGLNMGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTD---LNNGNLITNE---------QAES 233 (329)
T ss_dssp CTTCEEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSS---CSSCSCTTSB---------TTTT
T ss_pred hccCCEEEEEeCCCcEEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHh---hccCCCCCHH---------HHHH
Confidence 4568899999999999999988 5544 3333345679999999999987765 0333322211 2344
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
+|+. . . . ..+.+. ..++.+.+++..++.++.+.+.+++. +..++.++.|+|+||++.+ +.+.
T Consensus 234 i~~~-g-~--~-------~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~ 295 (329)
T 4apw_A 234 ALNN-G-Y--M-------KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQ 295 (329)
T ss_dssp CSSS-C-S--S-------CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHH
T ss_pred HHhc-C-C--c-------ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHH
Confidence 4443 1 1 1 001111 13556777888888887777777765 3455668999999999998 6699
Q ss_pred HHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 792 LQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 792 l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
|++.|+ .++....||..|+|+|+..++....
T Consensus 296 l~~~~~-~~v~v~~~P~~a~a~G~~~~~~~k~ 326 (329)
T 4apw_A 296 ISKTYP-NNSIITNNSQWTTCEGLYKVAVAKY 326 (329)
T ss_dssp HHHHST-TCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHcC-CCCEecCCChhhHHHHHHHHHhhhh
Confidence 999995 3456778999999999999886543
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=118.35 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=88.4
Q ss_pred cccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCc--CC-cceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecch
Q psy6736 77 GARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKV--DG-QNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEP 152 (1023)
Q Consensus 77 ~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~--~~-~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep 152 (1023)
+...+.+..-+....++ +|+... .++.. -. .++||.|.......|+.|.+.+ +.+|+..+.++.+|
T Consensus 83 Pi~~GvI~dwd~~E~iw-------~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~ 152 (498)
T 3qb0_A 83 IIENGLVIDWDTAQEQW-------QWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTS 152 (498)
T ss_dssp SEETTEESCHHHHHHHH-------HHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHH
T ss_pred cCcCCEEccHHHHHHHH-------HHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchH
Confidence 33445565556655565 555532 24322 23 6899999999999999998865 78999999999999
Q ss_pred HHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q psy6736 153 TAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 228 (1023)
Q Consensus 153 ~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~ 228 (1023)
.||+++++.. +-||+|+|+|+|+++.+. ++..- ........+||+++|+.|.++|..
T Consensus 153 vlalya~G~~----------------tglVVDiG~g~T~vvPI~--~G~~l-~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 153 TCVSFAAGRP----------------NCLVVDIGHDTCSVSPIV--DGMTL-SKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp HHHHHHHTCS----------------SEEEEEECSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCC----------------eEEEEEcCCCcEEEEEEe--CCEEc-cccceeccccHHHHHHHHHHHHHh
Confidence 9999887641 139999999999999985 33221 111112579999999999998864
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-09 Score=121.77 Aligned_cols=154 Identities=17% Similarity=0.229 Sum_probs=101.8
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 712 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 712 (1023)
++.++||+|+||||+|++++. ++.+. ...++...+||..++++|.+++.+++. +..+. .. ..++-
T Consensus 182 ~~~~~~vvDiGggTtd~~v~~--~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~~-------~i~~g 246 (355)
T 3js6_A 182 TEGKYSVLDFGSGTTIIDTYQ--NMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--PR-------MIEKG 246 (355)
T ss_dssp HTCEEEEEEECSSCEEEEEEE--TTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--HH-------HHHSC
T ss_pred ccCcEEEEEeCCCcEEEEEEc--CCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--HH-------HHhcC
Confidence 467899999999999999983 55432 112233579999999999999887642 11121 11 11211
Q ss_pred hhhcCCCceeEEEEecccCCcc--eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHH--H
Q psy6736 713 KRTLSSSTQASIEIDSLFEGVD--FYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK--V 788 (1023)
Q Consensus 713 K~~Ls~~~~~~~~i~~~~~~~~--~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~--v 788 (1023)
+. . . ..+.+ -...+ .+.+++.+++.++++.+.+++.+.+ ++.++.|+|+||++.++. +
T Consensus 247 ~~-~--------~----~~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l 308 (355)
T 3js6_A 247 LE-Y--------K----QCKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSL 308 (355)
T ss_dssp CC--------------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHH
T ss_pred Cc-c--------c----cccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhH
Confidence 11 0 0 00000 01122 3456777888888888888887764 466899999999999998 9
Q ss_pred HHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 789 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 789 ~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.+.|++.|+.. .||..|+|+|+..++..+.+
T Consensus 309 ~~~i~~~~~~~-----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 309 SHYYSDVFEKA-----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp HHHSSSCEECC-----SSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCC-----CCcHHHHHHHHHHHHHHHHh
Confidence 99999988532 89999999999999977653
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.7e-09 Score=118.02 Aligned_cols=168 Identities=21% Similarity=0.305 Sum_probs=90.2
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+.+|+|+|+|||+++.+. +|.. +........+||+++|+.|.+++..+ .+......... .+|.+|+
T Consensus 152 ~~~lVVDiG~g~T~v~pv~--~G~~-~~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~~~-------~ae~iK~ 218 (394)
T 1k8k_B 152 LTGVVVDSGDGVTHICPVY--EGFS-LPHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADFE-------TVRMIKE 218 (394)
T ss_dssp --CCEEEECSSCEEEECEE--TTEE-CSTTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTHH-------HHHHHHH
T ss_pred ceEEEEEcCCCceEeeeeE--CCEE-cccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHHHH-------HHHHHHH
Confidence 4679999999999998775 5543 22122346799999999999988764 11111111222 2344444
Q ss_pred hcCC----------------CceeEEEEecccCCcceEEEecHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCC
Q psy6736 715 TLSS----------------STQASIEIDSLFEGVDFYTSITRARFEELNADLF---------RGTMEPVEKSLRDAKMD 769 (1023)
Q Consensus 715 ~Ls~----------------~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~---------~~~~~~i~~~l~~~~~~ 769 (1023)
.++. .....+.++ ++. .++|++++|. +.+.+| ..+.+.|.+.|..+...
T Consensus 219 ~~~~v~~d~~~~~~~~~~~~~~~~~~~lp---dg~--~i~i~~erf~-~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d 292 (394)
T 1k8k_B 219 KLCYVGYNIEQEQKLALETTVLVESYTLP---DGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADID 292 (394)
T ss_dssp HHCCCCSSHHHHHHHHHHCSTTCEEEECT---TSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTT
T ss_pred hheeEecCHHHHHHhhccCCcCceEEECC---CCC--EEEECchhhc-ChHhhCCchhccCCCCCHHHHHHHHHHhCCHH
Confidence 4322 111223332 232 5678888774 333333 34778888888877432
Q ss_pred --ccccceEEEecCccCcHHHHHHHHHhhcC------------------cccCCCCCCccceecchHHHHHH
Q psy6736 770 --KAQIHDIVLVGGSTRIPKVQKLLQDFFNG------------------KELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 770 --~~~i~~V~LvGG~srip~v~~~l~~~f~~------------------~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
.+-.+.|+|+||+|++|.+.+.|++.+.. .++..+.+|..++.+|++++|..
T Consensus 293 ~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 293 TRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp THHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 34467899999999999999999987732 12223557789999999999963
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-09 Score=118.31 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=106.1
Q ss_pred ccCCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Q psy6736 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 707 (1023)
Q Consensus 628 ~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 707 (1023)
+.+.+.+-.+.++||||||+|+|++. ++.+....+ ...||+.++..|+.-|.-. + +.
T Consensus 402 LTedE~elGvaiIDmGgGTTd~sVf~--~g~lv~a~~---ip~gG~~VT~DIA~~Lg~~-----------d-------~~ 458 (607)
T 1nbw_A 402 LTTPGCAAPLAILDLGAGSTDAAIVN--AEGQITAVH---LAGAGNMVSLLIKTELGLE-----------D-------LS 458 (607)
T ss_dssp TTSTTCCSSEEEEEECSSEEEEEEEC--SSSCEEEEE---EECCHHHHHHHHHHHHTCS-----------C-------HH
T ss_pred cCCCCCcCCeEEEEeCCCcceEEEEc--CCcEEEEEE---eccchHHHHHHHHHHhCCC-----------C-------HH
Confidence 45667778899999999999999987 443333322 4589999998887543211 0 13
Q ss_pred HHHHHhhhcCC---------CceeEEEE--ecccCC---c------ceEEEecHHH--HHHHHHHHHHHHHHH--HHHHH
Q psy6736 708 ACERAKRTLSS---------STQASIEI--DSLFEG---V------DFYTSITRAR--FEELNADLFRGTMEP--VEKSL 763 (1023)
Q Consensus 708 ~~e~~K~~Ls~---------~~~~~~~i--~~~~~~---~------~~~~~itr~~--~~~~~~~~~~~~~~~--i~~~l 763 (1023)
.||++|+-=+. .....+.+ +.+... . +.-..| +.+ +|+ ++-+-+++.+. +...|
T Consensus 459 ~AErIK~YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~L 536 (607)
T 1nbw_A 459 LAEAIKKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCL 536 (607)
T ss_dssp HHHHHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCceeecccccccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHH
Confidence 57888872111 11123444 221110 1 122355 555 666 44444444433 34447
Q ss_pred HHcCCC-----ccccceEEEecCccCcHHHHHHHHHhhcC-c------ccCCCCCCccceecchHHHHH
Q psy6736 764 RDAKMD-----KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-K------ELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 764 ~~~~~~-----~~~i~~V~LvGG~srip~v~~~l~~~f~~-~------~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
+..+.. ..+|..|+|+||+|.+|.+.++.++.|+. . .......|..|+|.|.++|.+
T Consensus 537 ralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 537 RALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp HHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred HhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 776653 24669999999999999999999999954 1 122355899999999998753
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-09 Score=118.11 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=104.8
Q ss_pred ccCCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Q psy6736 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 707 (1023)
Q Consensus 628 ~~~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 707 (1023)
+.+.+.+-.+.++||||||+|+|++. ++.+....+ ...||+.++..|+.-|.-. . +.
T Consensus 400 LTeDE~eLGvaiIDmGGGTTd~sVf~--~G~lv~a~~---ip~gG~~VT~DIA~~Lgt~----------d--------~~ 456 (610)
T 2d0o_A 400 LTTPGTTRPLAILDLGAGSTDASIIN--PKGDIIATH---LAGAGDMVTMIIARELGLE----------D--------RY 456 (610)
T ss_dssp TTSTTCCSSEEEEEECSSEEEEEEEC--TTCCEEEEE---EECSHHHHHHHHHHHHTCC----------C--------HH
T ss_pred cCCCCCcCCeEEEEeCCCcceEEEEc--CCcEEEEEE---eccchHHHHHHHHHHhCCC----------C--------HH
Confidence 44556777899999999999999977 444333322 4589999998887543211 0 13
Q ss_pred HHHHHhhhcCC---------CceeEEEE--ecccCC---c------ceEEEecHHH--HHHHHHHHHHHHHHH--HHHHH
Q psy6736 708 ACERAKRTLSS---------STQASIEI--DSLFEG---V------DFYTSITRAR--FEELNADLFRGTMEP--VEKSL 763 (1023)
Q Consensus 708 ~~e~~K~~Ls~---------~~~~~~~i--~~~~~~---~------~~~~~itr~~--~~~~~~~~~~~~~~~--i~~~l 763 (1023)
.||++|+-=+. .....+.+ +.+... . +.-..| +.+ +|+ ++-+-+++.+. +...|
T Consensus 457 ~AErIK~YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~L 534 (610)
T 2d0o_A 457 LAEEIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNAL 534 (610)
T ss_dssp HHHHHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCceeecccccccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHH
Confidence 57888872111 11123444 221110 1 122355 555 666 44444443333 22335
Q ss_pred HHcCC-----CccccceEEEecCccCcHHHHHHHHHhhcCcc-------cCCCCCCccceecchHHHHH
Q psy6736 764 RDAKM-----DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE-------LNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 764 ~~~~~-----~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~-------~~~~~~p~~aVa~GAa~~a~ 820 (1023)
+..+. +..+|..|+|+||+|.+|.+.++.++.|+.-+ ......|..|+|.|.++|.+
T Consensus 535 ralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 535 RALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp HHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred HhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 54332 23567999999999999999999999995412 22345899999999998874
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=103.20 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=81.5
Q ss_pred hHHHHHHH-HHhCCcCCc-----ceEecCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhccccccCccccccC
Q psy6736 101 ILKKKTSE-DILRKVDGQ-----NEGLIPAYFNISSVKSTKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYN 173 (1023)
Q Consensus 101 ~~l~~~a~-~~~~~~~~~-----~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~ 173 (1023)
..+++++- ..|+....+ +++|.|..++...|+.|.+. .+..|+..+.++.++.+|++++|..
T Consensus 178 e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~----------- 246 (593)
T 4fo0_A 178 EVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS----------- 246 (593)
T ss_dssp HHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS-----------
T ss_pred HHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC-----------
Confidence 46777664 456654443 89999999999999887655 4667999999999999999887642
Q ss_pred CCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy6736 174 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 229 (1023)
Q Consensus 174 ~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 229 (1023)
+-+|+|+|+++|+|+-+.- |.. +........+||.++++.|.++|..+
T Consensus 247 -----tglVVDiG~~~T~v~PV~d--G~~-l~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 247 -----STCIVDVGDQKTSVCCVED--GVS-HRNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp -----EEEEEEECSSCEEEEEEES--SCB-CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred -----ceEEEEeCCCceeeeeeEC--CEE-ehhheEEecccHHHHHHHHHHHHHhc
Confidence 4599999999999887753 211 00001114699999999999887653
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.85 E-value=9e-05 Score=79.40 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 289 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 289 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
+++..+++.+...+.+.++..+. .+.|+++||.+++|.+++.+.+.+ +.++..+.+|+.+.|.|||++|....
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~~ 258 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKKA 258 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHhh
Confidence 34444555555444444443221 377999999999999999999999 67887787888899999999997643
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.71 E-value=1e-05 Score=92.51 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=95.3
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHHhh
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 714 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 714 (1023)
.+-||+|+|+|+++++.+. +|..- ........+||+++|+.|.+++..+... .. =...+|.+|+
T Consensus 179 ~tglVVDiG~g~T~v~PV~--~G~~l-~~~~~rl~~gG~~lt~~L~~lL~~~~~~------~~-------~~~~~~~IKe 242 (427)
T 3dwl_A 179 LTGTVVDSGDGVTHIIPVA--EGYVI-GSSIKTMPLAGRDVTYFVQSLLRDRNEP------DS-------SLKTAERIKE 242 (427)
T ss_dssp CCEEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHH
T ss_pred ceEEEEECCCCceEEEEEE--CCEEe-hhhheeccccHHHHHHHHHHHHHHcCCC------ch-------hHHHHHHHHH
Confidence 4689999999999999984 44321 1111124699999999999887654321 00 0123444455
Q ss_pred hcCCCce-----------eEEEEe--cc--cCCcceEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCC-
Q psy6736 715 TLSSSTQ-----------ASIEID--SL--FEGVDFYTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKMD- 769 (1023)
Q Consensus 715 ~Ls~~~~-----------~~~~i~--~~--~~~~~~~~~itr~~~~---~~~~~~------~~~~~~~i~~~l~~~~~~- 769 (1023)
.++.-.. ....+. .+ .+|....+.|..++|. -++.|- ...+.+.+.+.|.++...
T Consensus 243 ~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dl 322 (427)
T 3dwl_A 243 ECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDV 322 (427)
T ss_dssp HHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHH
T ss_pred hcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHH
Confidence 4432110 000010 01 2333345667777763 233331 134677777777765321
Q ss_pred -ccccceEEEecCccCcHHHHHHHHHhhcC---------------------cccCCCCCCccceecchHHHHH
Q psy6736 770 -KAQIHDIVLVGGSTRIPKVQKLLQDFFNG---------------------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 770 -~~~i~~V~LvGG~srip~v~~~l~~~f~~---------------------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
++=...|+|+||+|.+|.+.++|.+.+.. .++..+.++..++=+|++++|.
T Consensus 323 r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 323 RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 12235699999999999999988875511 1223345667889999999985
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.7e-05 Score=88.84 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=82.6
Q ss_pred hHHHHHHHH--HhCCcC-----CcceEecCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhccccccCcccccc
Q psy6736 101 ILKKKTSED--ILRKVD-----GQNEGLIPAYFNISSVKSTKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEY 172 (1023)
Q Consensus 101 ~~l~~~a~~--~~~~~~-----~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 172 (1023)
.++++++-. .++... ..++||.|..++...|+.|.+.+ +..|+..+.++.+|.||+++++.
T Consensus 200 E~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----------- 268 (655)
T 4am6_A 200 TKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----------- 268 (655)
T ss_dssp HHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----------
T ss_pred HHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----------
Confidence 455555543 444433 36999999999999999998887 56899999999999999988763
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy6736 173 NGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 229 (1023)
Q Consensus 173 ~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 229 (1023)
..+-+|+|+|+|+|+++.+. +|.. +........+||.++|+.|.++|..+
T Consensus 269 ----~ttGLVVDiG~g~T~VvPV~--eG~v-l~~ai~rL~iGG~dLT~yL~kLL~~r 318 (655)
T 4am6_A 269 ----STSTCVVNIGAAETRIACVD--EGTV-LEHSAITLDYGGDDITRLFALFLLQS 318 (655)
T ss_dssp ----SSCEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred ----CCceEEEcCCCceEEEEEEe--CCEE-EhhheeeecchHHHHHHHHHHHHHHc
Confidence 12459999999999999884 3321 11111125799999999999988764
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00034 Score=80.83 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=34.0
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q psy6736 637 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 685 (1023)
Q Consensus 637 vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~ 685 (1023)
-||+|+|+|+++++.+. +|..- ........+||+++|+.|.++|.+
T Consensus 164 glVVDiG~g~T~vvPI~--~G~~l-~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 164 CLVVDIGHDTCSVSPIV--DGMTL-SKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp EEEEEECSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCcEEEEEEe--CCEEc-cccceeccccHHHHHHHHHHHHHh
Confidence 59999999999999875 44321 111112469999999999998864
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=70.31 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 746 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+++..+++.+...+.+.++..++ .+.|+++||.++.|.+++.+.+.+ +.++..+.+|+.+.|+|||+.|...
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 34444444444444444443211 367999999999999999999999 5677777788889999999999764
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.014 Score=62.10 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=41.1
Q ss_pred cCeEEEEcC-CCCcHHHHHHHHHHc--CCccccccCCCchhHHhHHHHHH
Q psy6736 316 IHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 316 i~~V~LvGG-~sr~p~v~~~l~~~f--~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
++.|+++|| .+..|.+++.+++.+ .+.++..+.+|..+.|.|||+++
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 456999999 899999999999974 46778888899999999999863
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.019 Score=62.87 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHHH----HHcCCCccCcCeEEEEcC-CCCcHHHHHHHHHHc-----CCccccccCCCchhHHhH
Q psy6736 288 EELNADLFRGTMEPVEKSL----RDAKMDKAQIHDIVLVGG-STRIPKVQKLLQDFF-----NGKELNKSINPDEAVAYG 357 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l----~~~~~~~~~i~~V~LvGG-~sr~p~v~~~l~~~f-----~~~~i~~~~~pd~aVa~G 357 (1023)
++++..++.-+...|-... +..+ ++.|+++|| .+..|.+++.|++.+ ++.++..+.+|..+-|.|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 3445555555544443332 3333 456999999 999999999999986 346777788999999999
Q ss_pred HHHHH
Q psy6736 358 AAVQA 362 (1023)
Q Consensus 358 Aa~~a 362 (1023)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.038 Score=60.50 Aligned_cols=47 Identities=21% Similarity=0.065 Sum_probs=40.8
Q ss_pred cceEEEecC-ccCcHHHHHHHHHhhc-----CcccCCCCCCccceecchHHHH
Q psy6736 773 IHDIVLVGG-STRIPKVQKLLQDFFN-----GKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 773 i~~V~LvGG-~srip~v~~~l~~~f~-----~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
++.|+++|| .++.|.+++.|++.++ +.++..+.+|..+-|.|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 456999999 9999999999999863 4677778899999999999976
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=61.99 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=41.0
Q ss_pred cceEEEecC-ccCcHHHHHHHHHhh--cCcccCCCCCCccceecchHHHH
Q psy6736 773 IHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 773 i~~V~LvGG-~srip~v~~~l~~~f--~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
++.|+++|| .+..|.+++.+++.+ .+.++..+.+|..+.|.|||++|
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 456999999 899999999999974 46778888999999999999864
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.016 Score=69.55 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=34.0
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 686 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~ 686 (1023)
+-+|+|+|.++++|+-|. +|..- ........+||+++++.|.+.|..+
T Consensus 247 tglVVDiG~~~T~v~PV~--dG~~l-~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 247 STCIVDVGDQKTSVCCVE--DGVSH-RNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp EEEEEEECSSCEEEEEEE--SSCBC-GGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCceeeeeeE--CCEEe-hhheEEecccHHHHHHHHHHHHHhc
Confidence 579999999999988765 44321 1111124699999999998887653
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.03 Score=66.30 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=61.1
Q ss_pred EecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 281 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 281 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
.-+|.++..++..+++.+.-.++..++........++.|.++||.++++.+.+.+.+.| +.++..+ ...++.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 34687775445555555554444444322212234789999999999999999999999 7888665 567899999999
Q ss_pred HHHHHhC
Q psy6736 361 QAAILHG 367 (1023)
Q Consensus 361 ~a~~l~~ 367 (1023)
.|+.-.+
T Consensus 486 lA~~a~G 492 (554)
T 3l0q_A 486 MGTVAAG 492 (554)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9987654
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.036 Score=65.38 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 288 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.+++..+++.+.-.++..++..+.....++.|.++||+++++++.+.+.+.| +.++... .+.++.|+|||+.|+.-.+
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHhC
Confidence 4455556666665566666655544456788999999999999999999999 7887654 5688999999999976543
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.032 Score=64.90 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=55.4
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHH
Q psy6736 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 283 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
++.++ +..+++.+.-.++..++........++.|.++||+++++.+.+.+.+.+ +.++..+..++.+.|.|||+.|
T Consensus 357 ~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 357 GPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHH
Confidence 45444 3444444444333333322212234688999999999999999999999 7888777555556999999999
Q ss_pred HHHhC
Q psy6736 363 AILHG 367 (1023)
Q Consensus 363 ~~l~~ 367 (1023)
+.-.+
T Consensus 433 ~~~~g 437 (484)
T 2itm_A 433 QIAAN 437 (484)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 86554
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.045 Score=63.94 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=55.5
Q ss_pred cHHHHHHHhHHHHHHHHHHHHH---HHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHH
Q psy6736 283 TRARFEELNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 359 (1023)
Q Consensus 283 tr~~~e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa 359 (1023)
+|.++ +..+++.+.-.++. .|++.+ ..++.|.++||+++++.+.+.+.+.+ +.++... .+.++.|.|||
T Consensus 364 ~~~~l---~RAvlEgia~~~r~~~~~l~~~g---~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA 435 (504)
T 3ll3_A 364 QKPEM---ARAVIEGIIFNLYDAASNLIKNT---KKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAM 435 (504)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTS---CCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHH
Confidence 45554 34444444433333 334433 25789999999999999999999999 7887664 56789999999
Q ss_pred HHHHHHhC
Q psy6736 360 VQAAILHG 367 (1023)
Q Consensus 360 ~~a~~l~~ 367 (1023)
+.|+.-.+
T Consensus 436 ~lA~~a~G 443 (504)
T 3ll3_A 436 FLARQALG 443 (504)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99987554
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.035 Score=64.98 Aligned_cols=58 Identities=31% Similarity=0.484 Sum_probs=47.0
Q ss_pred HHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 305 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 305 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.|++.+. .++.|.++||.+++|.+.+.+.+.+ +.++... .+.++.|+|||+.|+.-.+
T Consensus 417 ~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 417 LIRSLGA---SITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp HHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCC---CCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHHHcC
Confidence 4444443 4688999999999999999999999 7887654 5677999999999986554
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.05 Score=63.52 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 290 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 290 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
++..+++.+.-.++..++...... .++.|.++||.++++.+.+.+.+.+ +.++..+ .+.++.|.|||+.|+.-.+
T Consensus 369 l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 369 LARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 344455555555555555443322 5788999999999999999999999 7888655 4566999999999987554
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.058 Score=63.14 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=56.8
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccc-cccCCCchhHHhHHHHH
Q psy6736 283 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 283 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i-~~~~~pd~aVa~GAa~~ 361 (1023)
+|.++ +..+++.+.-.++..++.... .. ++.|.++||+++++.+.+.+.+.+ +.++ ..+ .+.++.|.|||+.
T Consensus 375 ~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~~e~~alGaA~l 447 (511)
T 3hz6_A 375 TRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVKP-DAHLHPLRGLAAL 447 (511)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEECC-CGGGHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEec-CCCCchHHHHHHH
Confidence 45554 444455554444444443322 33 789999999999999999999999 7887 544 6889999999999
Q ss_pred HHHHhC
Q psy6736 362 AAILHG 367 (1023)
Q Consensus 362 a~~l~~ 367 (1023)
|+.-.+
T Consensus 448 A~~a~G 453 (511)
T 3hz6_A 448 AAVELE 453 (511)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 987655
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.073 Score=62.52 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=55.8
Q ss_pred cHHHHHH-HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 283 TRARFEE-LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 283 tr~~~e~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
+|.++-. +++.+.-.+...++..-+..+.. ++.|.++||+++++++.+.+.+.+ +.++..+ ...|+.|+|||+.
T Consensus 372 ~~~~i~RAvlEgia~~~r~~le~l~~~~g~~---~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~l 446 (526)
T 3ezw_A 372 NANHIIRATLESIAYQTRDVLEAMQADSGIR---LHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYL 446 (526)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHH
Confidence 4555432 22333333333333333345543 689999999999999999999999 7888765 5678999999999
Q ss_pred HHHHhC
Q psy6736 362 AAILHG 367 (1023)
Q Consensus 362 a~~l~~ 367 (1023)
|+.-.+
T Consensus 447 A~~a~G 452 (526)
T 3ezw_A 447 AGLAVG 452 (526)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 987665
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.06 Score=62.88 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=44.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++.+.+.+.+.+ +.++... .+.++.|.|||+.|+.-.+
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHHhC
Confidence 3688999999999999999999999 7887654 5778999999999987655
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.051 Score=63.19 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
+++.+++.+.-.++..++...-....++.|.++||.++.|.+.+++.+.+ +.++.....++.+.|+|||+.|+.-.+
T Consensus 361 ~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 361 LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 44455555544444444432222234678999999999999999999999 677766655555689999999987654
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.059 Score=63.76 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=61.2
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHH
Q psy6736 738 SITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 817 (1023)
Q Consensus 738 ~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~ 817 (1023)
.-+|.++-.+...+++.+.-.++..++...-....++.|.++||.++.|.+.+++.+.| +.++..+ ...++.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 34677875545666666655555544432222335789999999999999999999999 5666544 456799999999
Q ss_pred HHHHHhC
Q psy6736 818 QAAILHG 824 (1023)
Q Consensus 818 ~a~~l~~ 824 (1023)
.|+.-.+
T Consensus 486 lA~~a~G 492 (554)
T 3l0q_A 486 MGTVAAG 492 (554)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9987654
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.051 Score=63.72 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=43.4
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||++++|.+.+.+.+.+ +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 7887654 5678999999999987655
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.083 Score=61.60 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=43.7
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||.++++.+.+.+.+.+ +.++... .+.++.|.|||+.|+.-.+
T Consensus 398 ~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 398 RLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 4678999999999999999999999 7887655 5667999999999986554
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=94.03 E-value=0.07 Score=62.39 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=44.3
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.++.|.++||+++++.+.+.+.+.+ +.++... .+.++.|.|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHHHHHHHHHhC
Confidence 3688999999999999999999999 7887654 5778999999999987655
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=94.00 E-value=3.2 Score=44.77 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
..+.++-+..|+++--+=.|-+|...+.+....... .+...+|+|+|||+|.+++++- +.+.. ....
T Consensus 93 ~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~--------~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl 159 (315)
T 3mdq_A 93 VLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPM--------EDHISLAMDIGGGSVEFIIGNK--NEILW---KQSF 159 (315)
T ss_dssp HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCC--------TTCCEEEEEECSSCEEEEEECS--SCEEE---EEEE
T ss_pred HHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCC--------CCCCEEEEEeCCCceEEEEEEC--CeEee---eEEE
Confidence 445566666899885444556665444444332111 2356899999999999999863 22211 2225
Q ss_pred CccHHHHHHHH
Q psy6736 212 HLGGEDFDNRM 222 (1023)
Q Consensus 212 ~lGG~~~D~~l 222 (1023)
++|...+.+.+
T Consensus 160 ~lG~vrl~e~f 170 (315)
T 3mdq_A 160 EIGGQRLIDRF 170 (315)
T ss_dssp SCCHHHHHHHS
T ss_pred echhhHHHHHh
Confidence 78888777654
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.07 Score=62.38 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=46.8
Q ss_pred HHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 305 SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 305 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
.|++.+. .++.|.++||+++++.+.+.+.+.+ +.++.... ..++.|.|||+.|+.-.+
T Consensus 393 ~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 393 VLDDIGH---APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLA-NPLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp HHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEE-CCSTHHHHHHHHHHHHTC
T ss_pred HHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecC-CCCchHHHHHHHHHHHhC
Confidence 3444443 3688999999999999999999999 78887664 456899999999987654
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.073 Score=62.12 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 746 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 746 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++++.+++.+.-.++..++...-.. .++.|.++||.++.|.+.+++.+.+ +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 368 ~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 368 HLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 3445566666555566555443323 5788999999999999999999999 5666544 4456999999999987654
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.077 Score=62.08 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCccc-CCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL-NKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~-~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
+++.+++.+.-.++..++...- .. ++.|.++||+++.|.+.+++.+.| +.++ .. ..+.|+.|+|||+.|+.-.+
T Consensus 379 l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 379 ILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 4455555555555554443322 33 789999999999999999999999 5666 43 45889999999999987654
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.085 Score=62.15 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
..+++.+++.+.-.++..++..+.....++.|.++||+++.|++.+++.+.| +.++..+ .+.|+.|+|||+.|+.-.
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGL 483 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHh
Confidence 4566666777666666667665544456789999999999999999999999 5666443 567899999999997654
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.079 Score=61.90 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=55.1
Q ss_pred cHHHHHH-HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHH
Q psy6736 283 TRARFEE-LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 283 tr~~~e~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
+|.++-. +++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.+ +.++... .+.++.|.|||+.
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~l 447 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYA 447 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHH
Confidence 4555432 3333333333333332223343 3588999999999999999999999 7888655 5677999999999
Q ss_pred HHHHhC
Q psy6736 362 AAILHG 367 (1023)
Q Consensus 362 a~~l~~ 367 (1023)
|+.-.+
T Consensus 448 A~~~~G 453 (504)
T 2d4w_A 448 AGIAVG 453 (504)
T ss_dssp HHHHHT
T ss_pred HHhhcC
Confidence 987554
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.097 Score=61.08 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++..+++.+.-.++..++...-....++.|.++||.++.|.+.+++.+.| +.++... .+.|+.|+|||+.|+.-.+
T Consensus 368 l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 368 MARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 44455555544444444332111235789999999999999999999999 5666543 4677999999999987654
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.094 Score=61.24 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=43.1
Q ss_pred c-CeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHhC
Q psy6736 316 I-HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 367 (1023)
Q Consensus 316 i-~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~~ 367 (1023)
+ +.|.++||.++++.+.+.+.+.+ +.++... .+.++.|.|||+.|+.-.+
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 5 77999999999999999999999 7887655 5667999999999987554
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.085 Score=61.70 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 747 LNADLFRGTMEPVEK---SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~---~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
++..+++.+.-.++. .|++.+. .++.|.++||.++.|.+.+++.+.| +.++..+ .+.++.|+|||+.|+.-.
T Consensus 399 l~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 399 LARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHHHc
Confidence 344455544433333 3444443 4688999999999999999999999 5666543 456789999999998654
Q ss_pred C
Q psy6736 824 G 824 (1023)
Q Consensus 824 ~ 824 (1023)
+
T Consensus 474 G 474 (515)
T 3i8b_A 474 S 474 (515)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.11 Score=60.70 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHH---H-cCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 747 LNADLFRGTMEPVEKSLR---D-AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~---~-~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+++.+++.+.-.++..++ + .+. .++.|.++||.++.|++.+++.+.| +.++... .+.++.|+|||+.|+.-
T Consensus 378 l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a 452 (501)
T 3g25_A 378 FIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLA 452 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHH
Confidence 344455554444444333 2 343 4688999999999999999999999 5666443 46789999999999876
Q ss_pred hC
Q psy6736 823 HG 824 (1023)
Q Consensus 823 ~~ 824 (1023)
.+
T Consensus 453 ~G 454 (501)
T 3g25_A 453 VG 454 (501)
T ss_dssp TT
T ss_pred hC
Confidence 54
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.093 Score=61.30 Aligned_cols=51 Identities=25% Similarity=0.205 Sum_probs=42.7
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||.++.|.+.+++.+.| +.++..... .|+.|+|||+.|+.-.+
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~~-~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEEC-CSTHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecCC-CCchHHHHHHHHHHHhC
Confidence 4688999999999999999999999 566655433 56899999999987654
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.17 Score=59.02 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 747 LNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~~~~-~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
++..+++.+.-.+...++... .....++.|.++||.++.|.+.+++.+.+ +.++... .+.++.|+|||+.|+.-.+
T Consensus 372 ~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 372 LARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 344455555444444444321 11234678999999999999999999999 5666544 4567999999999987554
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.11 Score=61.06 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HcCCCccccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 747 LNADLFRGTMEPVEKSLR----DAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 747 ~~~~~~~~~~~~i~~~l~----~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+++.+++.+.-.++..++ ..+. .++.|.++||+++.|++.+++.+.| +.++..+ ...|+.|+|||+.|+.-
T Consensus 376 i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a 450 (526)
T 3ezw_A 376 IIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLA 450 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHH
Confidence 344445544433333333 3444 4678999999999999999999999 6776544 45688999999999876
Q ss_pred hC
Q psy6736 823 HG 824 (1023)
Q Consensus 823 ~~ 824 (1023)
.|
T Consensus 451 ~G 452 (526)
T 3ezw_A 451 VG 452 (526)
T ss_dssp TT
T ss_pred hC
Confidence 65
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.18 Score=58.54 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=39.6
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHH
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
.++.|.++||+++++++.+.+.+.+ +.++... . .++.|.|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~-~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-C-TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecC-C-ccHhHHHHHHHHHH
Confidence 3688999999999999999999999 7888654 3 68999999766644
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=91.95 E-value=0.13 Score=59.98 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=43.2
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||.++.|.+.+++.+.| +.++.. ..+.|+.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQR-AANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEE-CSSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEe-cCCCcchhHHHHHHHHHHhC
Confidence 4678999999999999999999999 566644 35678999999999987654
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.11 Score=60.72 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=42.1
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||.++.|.+.+++.+.| +.++..+ .+.|+.|+|||+.|+.-.+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 5666543 4677999999999987655
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.2 Score=54.41 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 211 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 211 (1023)
..+..+-+..|+++.-+-.|.+|...+.+...... .....+|+|+|||+|.+++.+ ++.+.. ..+.
T Consensus 101 ~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~---------~~~~~lvvDIGGGStEl~~~~--~~~~~~---~~Sl 166 (315)
T 1t6c_A 101 EFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLK---------PEGEVCVVDQGGGSTEYVFGK--GYKVRE---VISL 166 (315)
T ss_dssp HHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTC---------CCSEEEEEEEETTEEEEEEEE--TTEEEE---EEEE
T ss_pred HHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcc---------cCCCEEEEEeCCCcEEEEEEe--CCceee---EEEE
Confidence 44555555789998666667777655444433211 245689999999999999975 343311 2236
Q ss_pred CccHHHHHHHH
Q psy6736 212 HLGGEDFDNRM 222 (1023)
Q Consensus 212 ~lGG~~~D~~l 222 (1023)
.+|+..+.+.+
T Consensus 167 ~~G~v~l~e~~ 177 (315)
T 1t6c_A 167 PIGIVNLTETF 177 (315)
T ss_dssp CCCHHHHHHHH
T ss_pred eccHHHHHHHh
Confidence 89999887765
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.17 Score=59.00 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=41.9
Q ss_pred c-ceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 773 I-HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 773 i-~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
+ +.|.++||.++.|.+.+++.+.+ +.++... .+.++.|+|||+.|+.-.+
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 5 77999999999999999999999 5666543 4567999999999987654
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.19 Score=58.72 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=42.8
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.++||.++.|.+.+++.+.+ +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 3578999999999999999999999 5666543 4567999999999987654
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=0.3 Score=56.76 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=38.6
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHH
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
.++.|.++||.++.|++.+++.+.| +.++.... .++.|.|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecCC--ccHhHHHHHHHHHH
Confidence 3678999999999999999999999 56665432 68999999766644
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.48 E-value=0.51 Score=54.45 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=51.9
Q ss_pred HHHhHHHHHH--HHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHH-cCCccccccCCCchhHHhHHHHHHHH
Q psy6736 288 EELNADLFRG--TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF-FNGKELNKSINPDEAVAYGAAVQAAI 364 (1023)
Q Consensus 288 e~~~~~~~~~--i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~-f~~~~i~~~~~pd~aVa~GAa~~a~~ 364 (1023)
..+...+++. +.-.++..++.... .+.|.++||++++|...+.+.+. | +.++..+ ...++.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~-~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTA-NAHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEE-SSCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEc-CCCchHHHHHHHHhCc
Confidence 3455555553 44444555554321 27899999999999999999999 9 7888766 4567899999999864
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=85.49 E-value=43 Score=36.02 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcC--CccccccC---CCchhHHhHHHHHHHHH
Q psy6736 296 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 296 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~---~pd~aVa~GAa~~a~~l 365 (1023)
+.+.+.+.++.+..+ ++.|+|+||.+....+++.|.+.+. +.++..+. --|.+++.|++.+....
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~ 299 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYK 299 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHh
Confidence 334444445544433 5789999999999999999998762 23444333 34778899988765443
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=84.88 E-value=1.1 Score=51.55 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=50.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHh-hcCcccCCCCCCccceecchHHHHHH
Q psy6736 745 EELNADLFRG--TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF-FNGKELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 745 ~~~~~~~~~~--~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~-f~~~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
..+...+++. +.-.++..++...- .+.|.++||+++.|...+++.+. | +.++..+. ..++.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~~-~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTAN-AHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEES-SCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEcC-CCchHHHHHHHHhCc
Confidence 3455555553 44445555554321 26899999999999999999999 9 66765553 467899999999964
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=8.5 Score=41.74 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHHHHHhhc--CcccCCCC---CCccceecchHHHHHHH
Q psy6736 755 TMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 755 ~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~l~~~f~--~~~~~~~~---~p~~aVa~GAa~~a~~l 822 (1023)
+.+.+.++.+.. .++.|+|+||.+....+++.|.+.+. +.++..+. --|.++++|+|.+....
T Consensus 232 l~~~~~~~~~~~-----~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~ 299 (330)
T 2ivn_A 232 LVEVTERAVAHT-----EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYK 299 (330)
T ss_dssp HHHHHHHHHHHH-----CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHh
Confidence 344444444433 35689999999999999999998762 23333332 34678889988765443
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=81.31 E-value=31 Score=40.02 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccc-cCCCchhHHhHHHHH
Q psy6736 284 RARFEELNADL-FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEAVAYGAAVQ 361 (1023)
Q Consensus 284 r~~~e~~~~~~-~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~-~~~pd~aVa~GAa~~ 361 (1023)
..++...++.. .+-+.+.+.++.+..+ ++.|+|.||.+....+++.|.+..+-..+.. +.--|.+++.|+|++
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~ 354 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA 354 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence 34444334332 3334455555555554 5789999999999999999987643223332 234589999999999
Q ss_pred HHHHhC
Q psy6736 362 AAILHG 367 (1023)
Q Consensus 362 a~~l~~ 367 (1023)
+....+
T Consensus 355 a~~~~g 360 (576)
T 3ven_A 355 VAVELG 360 (576)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 877654
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=80.68 E-value=1.4 Score=48.24 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHh-ccccccCccccccCCCCCcEEEEEEeCCceEEEEEEEE--eC--CEEEEEE
Q psy6736 132 KSTKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSTAVEYNGSGERNVLIFDLGGGTFDVSILTI--ED--GIFEVKS 206 (1023)
Q Consensus 132 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~--~~--~~~~v~~ 206 (1023)
..+.++-+..|+++ ++|+-.+=|.+.| +....... .......+|+|+|||+|+++++.- .. +.+ .
T Consensus 106 ~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~------~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~--~- 175 (343)
T 3cer_A 106 EFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNR------DDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV--Q- 175 (343)
T ss_dssp HHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCT------TTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC--S-
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCcc------ccccCCEEEEEeCCCceEEEEeecCccCccccc--c-
Confidence 44555666679987 5555544444444 33222110 002345899999999999999754 22 101 0
Q ss_pred ecCCCCccHHHHHHHH
Q psy6736 207 TAGDTHLGGEDFDNRM 222 (1023)
Q Consensus 207 ~~~~~~lGG~~~D~~l 222 (1023)
......+|+..+.+.+
T Consensus 176 ~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 176 GAFSMNIGSVRMTERH 191 (343)
T ss_dssp EEEEESCCHHHHHHHT
T ss_pred eeEEEehhHHHHHHHh
Confidence 1223579999888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1023 | ||||
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 3e-85 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 3e-85 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 6e-81 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 6e-81 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 2e-73 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 3e-68 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 3e-54 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 3e-54 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 7e-48 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 7e-48 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 8e-39 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 5e-32 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 5e-32 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 4e-26 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 4e-26 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 1e-21 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 1e-09 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-20 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-20 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 3e-18 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 9e-08 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 1e-14 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 5e-14 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 1e-08 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 1e-04 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 1e-04 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 270 bits (692), Expect = 3e-85
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 235
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 236 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 295
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 296 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 355
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 356 YGAAVQAAIL 365
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 270 bits (692), Expect = 3e-85
Identities = 174/190 (91%), Positives = 187/190 (98%)
Query: 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 692
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 693 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF 752
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTSITRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 753 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 812
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 813 YGAAVQAAIL 822
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 259 bits (663), Expect = 6e-81
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 176 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 231
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 232 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 287
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 288 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 347
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 348 INPDEAVAYGAAVQAAIL 365
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 259 bits (663), Expect = 6e-81
Identities = 89/198 (44%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 633 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 688
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 689 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSITRARF 744
+ DL + A++RL+ A E+AK LSS+ Q + + + +TRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 745 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 805 INPDEAVAYGAAVQAAIL 822
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 237 bits (606), Expect = 2e-73
Identities = 145/159 (91%), Positives = 153/159 (96%)
Query: 370 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 429
SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 430 GERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 489
GERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNV+A++KSTGKENKITIT
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 490 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528
ND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+KNSLE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 223 bits (569), Expect = 3e-68
Identities = 145/185 (78%), Positives = 153/185 (82%), Gaps = 26/185 (14%)
Query: 827 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 886
SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 887 GERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITIT 946
GERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGI------------------- 101
Query: 947 NDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISA 1006
LNV+A++KSTGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +S+
Sbjct: 102 -------LNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 154
Query: 1007 KNSLE 1011
KNSLE
Sbjct: 155 KNSLE 159
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 182 bits (462), Expect = 3e-54
Identities = 77/117 (65%), Positives = 89/117 (76%)
Query: 377 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 436
LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 437 DNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 493
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 182 bits (462), Expect = 3e-54
Identities = 77/117 (65%), Positives = 89/117 (76%)
Query: 834 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 893
LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 894 DNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 950
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+V+A +K++GKE KITI G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 164 bits (415), Expect = 7e-48
Identities = 56/115 (48%), Positives = 74/115 (64%)
Query: 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 438
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 439 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 493
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 164 bits (415), Expect = 7e-48
Identities = 56/115 (48%), Positives = 74/115 (64%)
Query: 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 895
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 896 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRG 950
L +F L IP P G I VTF +DA+G+L+VTA+EKSTG E I + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 136 bits (345), Expect = 8e-39
Identities = 58/83 (69%), Positives = 70/83 (84%)
Query: 523 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQK 582
+ LESY FNMK+TVEDEKL+ KI+D ++ +ILDKCN++I WLD NQ AEKEEFEH+QK
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 583 ELEAICNPIITKLYQGSGGAPGG 605
ELE +CNPIITKLYQ +GG PGG
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 5e-32
Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 19/207 (9%)
Query: 628 IEEGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 687
+EE ++ D+GGGT +V+++++ + + G++ D +V + + +
Sbjct: 3 VEE---PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETY 54
Query: 688 KRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEEL 747
+ + + + + + ++ L G+ ++ E
Sbjct: 55 RVAIGERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREA 109
Query: 748 NADLFRGTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 804
+ +E V +L + I L GG + + + LLQ G + +S
Sbjct: 110 LRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRS 168
Query: 805 INPDEAVAYGAAVQAAILHGDKSEEVQ 831
P AVA GA + + + +++Q
Sbjct: 169 EEPLTAVAKGAGMVLDKV--NILKKLQ 193
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 5e-32
Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
+ + + + ++ L G+ ++ E +
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 115
Query: 297 GTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 353
+E V +L + I L GG + + + LLQ G + +S P A
Sbjct: 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 174
Query: 354 VAYGAAVQAAILHGDKSEEVQ 374
VA GA + + + +++Q
Sbjct: 175 VAKGAGMVLDKV--NILKKLQ 193
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 4e-26
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 354
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 355 AYGAAVQA 362
G +
Sbjct: 155 VNGMYLIG 162
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 4e-26
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
SS A I + I + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 811
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 812 AYGAAVQA 819
G +
Sbjct: 155 VNGMYLIG 162
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 88.6 bits (220), Expect = 1e-21
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 554
L++++I++MV DAE D K + ++ +N + + + VE+ DK+ ++T
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 58
Query: 555 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPI 591
I + L +K E K +EL + +
Sbjct: 59 IESALTALETALKGE---DKAAIEAKMQELAQVSQKL 92
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 54.0 bits (130), Expect = 1e-09
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
L++++I++MV DAE D K + ++ +N + + +
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 42
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.3 bits (213), Expect = 3e-20
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 355
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 356 YG 357
G
Sbjct: 152 LG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.3 bits (213), Expect = 3e-20
Identities = 21/182 (11%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
DL + + + ++ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 812
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 813 YG 814
G
Sbjct: 152 LG 153
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 78.8 bits (194), Expect = 3e-18
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQ 554
L+ +I M+ D+ Y +D K + + K ++ + + +S AER
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQV 58
Query: 555 ILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGS 599
I D + + + + + E K ++ + S
Sbjct: 59 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 100
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (117), Expect = 9e-08
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKS 1019
L+ +I M+ D+ Y +D K + + K ++
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHG 42
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 71.2 bits (174), Expect = 1e-14
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 164
+PAYFN + ++TKD+G IAGL V RIINEPTAAA+AYGLDK
Sbjct: 140 VPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.3 bits (169), Expect = 5e-14
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 16/86 (18%)
Query: 90 RGVKAIFTAPDILKKKTSEDILRKVDGQNEGL-----------IPAYFNISSVKSTKDSG 138
+G F ++ S +L K+ E +PAYFN S ++TKD+G
Sbjct: 105 KGETKSFYPEEV-----SSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159
Query: 139 TIAGLNVLRIINEPTAAAIAYGLDKK 164
TIAGLNVLRIINEPTAAAIAYGLDKK
Sbjct: 160 TIAGLNVLRIINEPTAAAIAYGLDKK 185
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 52.4 bits (125), Expect = 1e-08
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 122 IPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLD 162
+P ++ D+G AG + + +I EP AAAI G +
Sbjct: 99 VPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 236
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 237 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 296
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 297 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 340
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 634 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 693
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 694 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR 753
+ T+ A+ E R L +T + L I AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 754 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 797
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1023 | |||
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.89 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.87 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.82 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.81 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.79 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.54 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.46 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.41 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.4 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.4 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.37 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.14 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.1 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 98.88 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.72 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.66 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.63 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.57 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.5 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.44 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.43 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.15 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 97.1 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 96.99 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 96.89 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 96.13 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.31 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.13 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 94.06 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 93.93 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 93.04 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 92.19 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 87.97 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 87.0 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 85.09 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 82.59 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 82.43 |
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-38 Score=319.29 Aligned_cols=192 Identities=91% Similarity=1.314 Sum_probs=185.1
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
..+++||||||||||||+|++++.++.+++++++|+..+||++||++|++|+.++|..+++.++..+++++.+|+.+||+
T Consensus 2 ~~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 81 (193)
T d1bupa2 2 GAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACER 81 (193)
T ss_dssp SSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
+|+.||.+.++.+.++.+..+.++..+|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.
T Consensus 82 ~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 82 AKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred HhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 792 LQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 792 l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
|+++|++.++..+.||++|||+|||++||+++
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99999888888899999999999999999874
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=4.8e-37 Score=314.27 Aligned_cols=189 Identities=46% Similarity=0.766 Sum_probs=176.1
Q ss_pred cceEEEEEeCCceEEEEEEEEe----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy6736 634 ERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 709 (1023)
Q Consensus 634 ~~~vlV~D~GggT~dvsi~~~~----~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 709 (1023)
+++||||||||||||+|++++. ++.+++++++|+..+||++||++|++|+.++|.++++.++..+++++.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 5789999999999999999997 457899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCceeEEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCc
Q psy6736 710 ERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 785 (1023)
Q Consensus 710 e~~K~~Ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~sri 785 (1023)
|++|+.||.+.++++.++.+..+ .++.++|||++|+++++|+++++.++|.++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999999998865543 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHh
Q psy6736 786 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 823 (1023)
Q Consensus 786 p~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~ 823 (1023)
|+|++.|+++|+ .++..+.||++|||+|||++|+++|
T Consensus 162 p~l~~~i~~~f~-~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFG-KEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHS-SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHC-CCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999994 5788899999999999999998764
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.5e-36 Score=307.56 Aligned_cols=191 Identities=91% Similarity=1.320 Sum_probs=184.7
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHH
Q psy6736 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 255 (1023)
Q Consensus 176 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~ 255 (1023)
.+++||||||||||||+|++++.++.+++++++|+..+||.+||++|++|+.++|.++++.++..+++.+.+|+.+||++
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 82 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA 82 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHH
Q psy6736 256 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 335 (1023)
Q Consensus 256 K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l 335 (1023)
|+.||.+.++.+.++.+..+.++..+|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.|
T Consensus 83 K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i 162 (193)
T d1bupa2 83 KRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 162 (193)
T ss_dssp HHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred hhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 336 QDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 336 ~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
++.|++.++..+.||++|||+|||++||.++
T Consensus 163 ~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 163 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 9999888888899999999999999999875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.3e-35 Score=303.51 Aligned_cols=189 Identities=47% Similarity=0.777 Sum_probs=175.8
Q ss_pred CcEEEEEEeCCceEEEEEEEEe----CCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHH
Q psy6736 177 ERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 252 (1023)
Q Consensus 177 ~~~vlV~D~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~a 252 (1023)
+++||||||||||||+|++++. .+.++++++.++..+||++||++|++|+.++|.++++.+...+++.+.+|+++|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 3579999999999999999997 457899999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHcCCCCceEEEEecccCC----ceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCc
Q psy6736 253 ERAKRTLSSSTQASIEIDSLFEG----VDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 328 (1023)
Q Consensus 253 e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~ 328 (1023)
|++|+.||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.++|.++|+++++.+.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 99999999999999988765443 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHHh
Q psy6736 329 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 366 (1023)
Q Consensus 329 p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l~ 366 (1023)
|+|++.|++.| +.++..++||++|||+|||++|+.+|
T Consensus 162 p~l~~~i~~~f-~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHH-CCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999 56788899999999999999998764
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=2.6e-30 Score=249.06 Aligned_cols=157 Identities=91% Similarity=1.266 Sum_probs=148.5
Q ss_pred cccceEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCC
Q psy6736 829 EVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPP 908 (1023)
Q Consensus 829 ~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~ 908 (1023)
.++++++.|++|+||||++.+|.|.++||||++||+++++.|+|..|+|+.+.|.||||++..+.+|.+||+|.|.++|+
T Consensus 3 ~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~ 82 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 82 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCC
T ss_pred ccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCCccEEEEEEEcccCceeeEEeccccccccccccccccccCcccceEEeeCCCCCCHHHHHHHHH
Q psy6736 909 APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRRYLNVTAIEKSTGKENKITITNDRGRLSKEDIERMVN 988 (1023)
Q Consensus 909 ~~~g~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eei~~~~~ 988 (1023)
+|+|.++|.|+|++|.||+|+|+|.+..||+...+.+. .....||++|++++++
T Consensus 83 ~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~--------------------------~~~~~Ls~eEIek~i~ 136 (159)
T d1yuwa1 83 APRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT--------------------------NDKGRLSKEDIERMVQ 136 (159)
T ss_dssp CSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEEC--------------------------CCSSCSCHHHHHHHHH
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEe--------------------------cCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987765554 3445799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 989 DAEKYKAEDEKQKAVISAKNSLE 1011 (1023)
Q Consensus 989 ~~~~~~~~d~~~~~~~~akN~lE 1011 (1023)
++++++.+|+..|+..++||.||
T Consensus 137 eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 137 EAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp HHHHTTTHHHHHTTSSCSCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999886
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=9.5e-30 Score=245.12 Aligned_cols=157 Identities=91% Similarity=1.266 Sum_probs=152.5
Q ss_pred ceeeeEEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCC
Q psy6736 372 EVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPP 451 (1023)
Q Consensus 372 ~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~ 451 (1023)
.++++++.|++|+|+|+++.+|.|.++||||++||++++..|+|..|+|+.+.|+||||++..+.+|.+||+|.|+++|+
T Consensus 3 ~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~ 82 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPP 82 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCC
T ss_pred ccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6736 452 APRGVPQIEVTFDIDANGILNVTAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLE 528 (1023)
Q Consensus 452 ~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE 528 (1023)
+|+|.+.|.|+|++|.||+|+|+|.+..||++..+++.+..+.|++++++++++++++++.+|++.|++.++||.||
T Consensus 83 ~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 83 APRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999876
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=9.7e-24 Score=191.86 Aligned_cols=116 Identities=66% Similarity=0.979 Sum_probs=111.4
Q ss_pred eEEeeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCC
Q psy6736 833 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRG 912 (1023)
Q Consensus 833 ~~~~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g 912 (1023)
+++.|++|+|||+++.+|.|.++||||++||+++++.|+|..|+|+.+.|+||||++..+.+|..||++.|.++|+.|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 913 VPQIEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 913 ~~~i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
.+.|+|+|++|.||+|+|+|.+..+|++.++++..+
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~ 116 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 116 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcC
Confidence 999999999999999999999999999988877654
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=5.1e-23 Score=186.42 Aligned_cols=113 Identities=49% Similarity=0.803 Sum_probs=109.4
Q ss_pred eeccceeeEEEeeCceeEEeecCCCCCCcceEEEEEeecCCCCcEEEEEeecCccccccCceeeEEEEecCCCCCCCCCe
Q psy6736 836 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 915 (1023)
Q Consensus 836 ~d~~~~sigi~~~~~~~~~ii~~~~~lP~~~~~~f~~~~~~q~~i~i~iyeg~~~~~~~~~~ig~~~l~~~~~~~~g~~~ 915 (1023)
.|++|+|+|+++.+|.|.+|||||++||+++++.|++..|+|+.+.|+||||++..+.+|..||.|.|.++|++|+|.+.
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEEEcccCceeeEEeccc
Q psy6736 916 IEVTFDIDANGILNVTAIEKSTGKENKITITND 948 (1023)
Q Consensus 916 i~v~f~id~~gil~V~a~~~~~~~~~~~~~~~~ 948 (1023)
|+|+|++|.||+|+|+|.+..||++.++++..+
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~ 113 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS 113 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCC
Confidence 999999999999999999999999998887754
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.2e-22 Score=184.63 Aligned_cols=116 Identities=66% Similarity=0.974 Sum_probs=112.2
Q ss_pred EEeeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCC
Q psy6736 377 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGV 456 (1023)
Q Consensus 377 ~~~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~ 456 (1023)
++.|++|+|+|+++.+|.|.+|||||+++|+++++.|+|..|+|+.+.|++||||+..+.+|..||+|.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcCCcceEEEEEeccCCcceeEEEecCC
Q psy6736 457 PQIEVTFDIDANGILNVTAIEKSTGKENKITITNDR 492 (1023)
Q Consensus 457 ~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~ 492 (1023)
+.|+|+|++|.||+|+|+|.+..||++..+++....
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999987653
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.1e-22 Score=180.41 Aligned_cols=114 Identities=48% Similarity=0.791 Sum_probs=110.7
Q ss_pred eeeccccceEEecCceEEEEEecCCCCCCceEEEEEeccCCCCcEEEEEeecCccccccCceeeEEEecCCCCCCCCCCe
Q psy6736 379 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 458 (1023)
Q Consensus 379 ~d~~~~sigi~~~~~~~~~ii~~~t~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~i~~~~~~~~g~~~ 458 (1023)
.||+|+|+|+++.+|.|.+|||||+++|++++..|+|..|+|+.+.|+||||++..+.+|..||+|.+.++|++|+|.+.
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCcceEEEEEeccCCcceeEEEecCC
Q psy6736 459 IEVTFDIDANGILNVTAIEKSTGKENKITITNDR 492 (1023)
Q Consensus 459 i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~ 492 (1023)
|+|+|++|.||+|+|+|.+..||++..+++..+.
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998754
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.2e-21 Score=197.86 Aligned_cols=180 Identities=18% Similarity=0.279 Sum_probs=132.7
Q ss_pred CCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHH
Q psy6736 631 GSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACE 710 (1023)
Q Consensus 631 ~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 710 (1023)
.+++..+|||||||||||+||++..+ + ...+....||.+++..+..++...+...... ...........
T Consensus 3 ~~~~~gvlV~DiGGGT~Dvsi~~~g~--~---~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 71 (196)
T d1jcea2 3 VEEPSGNMVVDIGGGTTEVAVISLGS--I---VTWESIRIAGDEMDEAIVQYVRETYRVAIGE------RTAERVKIEIG 71 (196)
T ss_dssp TTSSSCEEEEEECSSCEEEEEEETTE--E---EEEEEESCSHHHHHHHHHHHHHHHHCEECCH------HHHHHHHHHHC
T ss_pred CCCCCceEEEEcCCCcEEEEEEEcCC--E---eEEeeecCCCcccccchhhhhhhhhcccccc------hhHHHHHHHHh
Confidence 46788899999999999999988533 2 2223467899999999999988876433211 11111111111
Q ss_pred HHhhh-cCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---ccceEEEecCccCcH
Q psy6736 711 RAKRT-LSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKA---QIHDIVLVGGSTRIP 786 (1023)
Q Consensus 711 ~~K~~-Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~i~~V~LvGG~srip 786 (1023)
.++.. .+......+......++......+++.++++++.+++.++...+.++++.+..... .++.|+||||+|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip 151 (196)
T d1jcea2 72 NVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLR 151 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSB
T ss_pred hhhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcch
Confidence 11111 11123344555556677778889999999999999999999999999997765432 256799999999999
Q ss_pred HHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 787 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 787 ~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
.|+++|++.| +.++....||++|||+|||+++..+
T Consensus 152 ~v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 152 GLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp THHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred hHHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCH
Confidence 9999999999 5788889999999999999987443
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.82 E-value=7.2e-21 Score=191.08 Aligned_cols=137 Identities=36% Similarity=0.480 Sum_probs=111.5
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||+|+++.|.+ +.|++|.+.+||++.+. .++...+| ..|..+..++|+++|..
T Consensus 14 va~~~~~~~~i-i~n~~~~~~~ps~v~~~------------------~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~ 74 (183)
T d1dkgd1 14 VAIMDGTTPRV-LENAEGDRTTPSIIAYT------------------QDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRR 74 (183)
T ss_dssp EEEEETTEEEE-CCCTTSCSEEECEEEEC------------------TTSCEEESHHHHTTSTTCGGGEEECGGGTTTCB
T ss_pred EEEEECCEEEE-EEcCCCcccccceeeec------------------CCCCEEccHHHHHhhhcCCccEEeeeHHHcCCC
Confidence 57788888877 77888877777777664 22333344 45666777888888852
Q ss_pred C-----------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHH
Q psy6736 73 T-----------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNIS 129 (1023)
Q Consensus 73 ~-----------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 129 (1023)
. ......+..++|+++++++| ++|++.|+.++|.++.++|||||++|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L-------~~l~~~a~~~~~~~~~~~VitVPa~f~~~ 147 (183)
T d1dkgd1 75 FQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL-------KKMKKTAEDYLGEPVTEAVITVPAYFNDA 147 (183)
T ss_dssp SCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHH-------HHHHHHHHHHHSSCCCEEEECBCTTCCHH
T ss_pred CCcHHHHhhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHH-------HHHHHHHHHHhCCCCCeEEEEECCCCCHH
Confidence 1 11122345689999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhcccc
Q psy6736 130 SVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163 (1023)
Q Consensus 130 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~ 163 (1023)
||++|++||++||+++++||+||+|||++|++++
T Consensus 148 ~r~~l~~Aa~~AG~~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 148 QRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp HHHHHHHHHHHTTCEESCCCBHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEecCHHHHHHHhcccC
Confidence 9999999999999999999999999999999865
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=5.2e-21 Score=195.12 Aligned_cols=179 Identities=18% Similarity=0.274 Sum_probs=132.9
Q ss_pred CCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHH
Q psy6736 175 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 254 (1023)
Q Consensus 175 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~ 254 (1023)
.++.++|||||||||||+|+++.++..+ .+....||.+++..+..++...+..... .............
T Consensus 4 ~~~~gvlV~DiGGGT~Dvsi~~~g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 72 (196)
T d1jcea2 4 EEPSGNMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKIEIGN 72 (196)
T ss_dssp TSSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHHHHCB
T ss_pred CCCCceEEEEcCCCcEEEEEEEcCCEeE-----EeeecCCCcccccchhhhhhhhhccccc------chhHHHHHHHHhh
Confidence 3788999999999999999998754333 3446789999999999998887652221 1111111111100
Q ss_pred Hh-HHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcc---CcCeEEEEcCCCCcHH
Q psy6736 255 AK-RTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKA---QIHDIVLVGGSTRIPK 330 (1023)
Q Consensus 255 ~K-~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~---~i~~V~LvGG~sr~p~ 330 (1023)
++ ...+......+......++......+++.++++++.+++.++...+.++++.+..... .++.|+||||+|++|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~ 152 (196)
T d1jcea2 73 VFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRG 152 (196)
T ss_dssp CSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBT
T ss_pred hhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchh
Confidence 00 0001112344555566677788899999999999999999999999999997765432 2467999999999999
Q ss_pred HHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 331 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 331 v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
|+++|++.| +.++....||++|||+|||+++..+
T Consensus 153 v~~~l~~~f-g~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 153 LDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp HHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred HHHHHHHHH-CcCCccCCChHHHHHHHHHHHHHCH
Confidence 999999999 6889999999999999999987544
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=4.4e-20 Score=185.65 Aligned_cols=136 Identities=36% Similarity=0.400 Sum_probs=108.5
Q ss_pred CcccCCCCCeeEEeecccccccceeecccccccCCccccceeeEEEeccCeEEee--------cCCCceeeeeecccCCc
Q psy6736 1 MAIIHPDHPEVEITEEQSLLIQTSIMDLIGDNLGQGLIKPAFSGIRLEEGAVMLY--------CSDGYTAGWINSITGDL 72 (1023)
Q Consensus 1 vav~~~~~p~~~~~~~~~~~~~pS~~~~~~~~~g~~~~~ps~v~~~~~~~~~~~G--------~~~~~~~~~~k~~~g~~ 72 (1023)
||++.++.|.+ +.|++|++.+||++.+..+ ...+| ..|..++..+|+++|..
T Consensus 15 va~~~~g~~~i-i~~~~~~r~~Ps~i~~~~~-------------------~~~vG~~a~~~~~~~p~~~i~~~KrllG~~ 74 (185)
T d1bupa1 15 VGVFQHGKVEI-IANDQGNRTTPSYVAFTDT-------------------ERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 74 (185)
T ss_dssp EEEEETTEEEE-CCCTTSCSSEECCEEECSS-------------------CEEETHHHHTTTTTCGGGEECCHHHHTTCC
T ss_pred EEEEECCEEEE-EECCCCCccceeEEEECCC-------------------cEEEeechHHHhhcCcccchhHHHHHhCCC
Confidence 56777888877 7787777777777766421 12223 34556667788888742
Q ss_pred C--------------------------ccccccccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCC
Q psy6736 73 T--------------------------PWDGARLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYF 126 (1023)
Q Consensus 73 ~--------------------------~~~~~~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~ 126 (1023)
. +........++|++|++++| ++|++.|+.+++.++.++|||||++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l-------~~l~~~a~~~~~~~~~~~VitvPa~f 147 (185)
T d1bupa1 75 FDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL-------TKMKEIAEAYLGKTVTNAVVTVPAYF 147 (185)
T ss_dssp TTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHH-------HHHHHHHHHHHTSCCCEEEEEECTTC
T ss_pred CccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHH-------HHHHHHHHHHhCCCcCcEEEEECCCC
Confidence 1 11122335689999999999 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceeeeecchHHHHHHhcccc
Q psy6736 127 NISSVKSTKDSGTIAGLNVLRIINEPTAAAIAYGLDK 163 (1023)
Q Consensus 127 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~ 163 (1023)
++.||++|++||++|||++++||+||+|||++|++++
T Consensus 148 ~~~qr~~~~~Aa~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 148 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999999999999999998764
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=4.9e-15 Score=125.91 Aligned_cols=81 Identities=69% Similarity=1.151 Sum_probs=75.7
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q psy6736 523 AKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEKEEFEHKQKELEAICNPIITKLYQGSGGA 602 (1023)
Q Consensus 523 a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~~~~~~kl~~L~~~~~pi~~r~~e~~g~~ 602 (1023)
++|.||+|||.+|+.|.++.+..++++++++.|.+.|+++++||+++.++++++|.+|+++|++++.||+.|+++.+|+.
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~~ 81 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGM 81 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 57999999999999999888999999999999999999999999998889999999999999999999999998877654
Q ss_pred C
Q psy6736 603 P 603 (1023)
Q Consensus 603 ~ 603 (1023)
|
T Consensus 82 P 82 (84)
T d1ud0a_ 82 P 82 (84)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.9e-14 Score=138.74 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=102.3
Q ss_pred CCCCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Q psy6736 630 EGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 709 (1023)
Q Consensus 630 ~~~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 709 (1023)
++++..++||+|+||||||+++++ ++...+..+.++..+||.++++++++++...+... .......+
T Consensus 2 ~l~e~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~---- 68 (163)
T d2zgya2 2 ELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDI---- 68 (163)
T ss_dssp HSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHH----
T ss_pred CCCCCCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHH----
Confidence 346678999999999999999976 55566667777789999999999988765432211 01000111
Q ss_pred HHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHH
Q psy6736 710 ERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 789 (1023)
Q Consensus 710 e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~ 789 (1023)
++... ... +..........++.+.+++.+.++.+.+.+.+.+ ....+++.|+|+||+|+ .++
T Consensus 69 --~~~~~---~~~-------~~~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~--ll~ 130 (163)
T d2zgya2 69 --IIHRK---DNN-------YLKQRINDENKISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAE--LIC 130 (163)
T ss_dssp --HHTTT---CHH-------HHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHH--HHH
T ss_pred --HHhhc---ccc-------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHH--HHH
Confidence 00000 000 0000001122445555555555555555555444 34567899999999996 599
Q ss_pred HHHHHhhcC--cccCCCCCCccceecchHHHH
Q psy6736 790 KLLQDFFNG--KELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 790 ~~l~~~f~~--~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+.|++.|+. ..+....||..|+|+|+.++|
T Consensus 131 ~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 131 DAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 999999953 246678899999999998876
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=4.2e-14 Score=138.53 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHH---H
Q psy6736 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA---C 252 (1023)
Q Consensus 176 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~---a 252 (1023)
+..++||||+||||||+++++ ++...+....++..+||.++++.+++++...+... .......+... .
T Consensus 5 e~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~~~~~~~~ 75 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDIIIHRKDN 75 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHHHHTTTCH
T ss_pred CCCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHHHHhhccc
Confidence 567899999999999999976 34445556667789999999999988775433211 01000111000 0
Q ss_pred HHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHH
Q psy6736 253 ERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 332 (1023)
Q Consensus 253 e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~ 332 (1023)
...... ......++.+.+++.+.+..+.+.+.+.+ ....+++.|+|+||+|+ .++
T Consensus 76 ~~~~~~-------------------~~~~~~~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~--ll~ 130 (163)
T d2zgya2 76 NYLKQR-------------------INDENKISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAE--LIC 130 (163)
T ss_dssp HHHHHH-------------------SSSSCTHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHH--HHH
T ss_pred cccccc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHH--HHH
Confidence 000000 01122455556666555555555555544 34567899999999995 599
Q ss_pred HHHHHHcCC--ccccccCCCchhHHhHHHHHH
Q psy6736 333 KLLQDFFNG--KELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 333 ~~l~~~f~~--~~i~~~~~pd~aVa~GAa~~a 362 (1023)
+.|++.|+. ..+....||..|+|+|+.++|
T Consensus 131 ~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 131 DAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 999999953 246778899999999999876
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1.7e-13 Score=137.28 Aligned_cols=158 Identities=18% Similarity=0.271 Sum_probs=112.7
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHH
Q psy6736 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 255 (1023)
Q Consensus 176 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~ 255 (1023)
++..++|+|+|+||||++++. ++.+... ....+||++||+.|+..+.-.+ .+||+.
T Consensus 5 k~~Gv~vvDiG~~tt~i~i~~--~G~l~~~---~~i~~GG~~iT~~Ia~~l~i~~-------------------~~AE~i 60 (191)
T d1e4ft2 5 KDRGVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPVGMKHVIKDVSAVLDTSF-------------------EESERL 60 (191)
T ss_dssp HHHCEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCHHHHHHHHHHHHTCCH-------------------HHHHHH
T ss_pred hhCCEEEEEeCCCcEEEEEEE--CCeEEEE---EEEeeChHHHHHHHHHHhcccH-------------------HHHHHH
Confidence 456799999999999999976 3433222 2257999999999987654222 378999
Q ss_pred hHHcCCC-----CceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC------ccCcCeEEEEcC
Q psy6736 256 KRTLSSS-----TQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD------KAQIHDIVLVGG 324 (1023)
Q Consensus 256 K~~Ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~------~~~i~~V~LvGG 324 (1023)
|+.+... ....+.+.. .+......+++..+.+++++.++++...+.+.++..... ...+..|+|+||
T Consensus 61 K~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGG 138 (191)
T d1e4ft2 61 IITHGNAVYNDLKEEEIQYRG--LDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGG 138 (191)
T ss_dssp HHHHCCSCCTTCCCCEEEEEC--TTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESG
T ss_pred Hhhccccccccccchhccccc--ccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecc
Confidence 9986532 222333332 223345678999999999999999999988888754321 112346999999
Q ss_pred CCCcHHHHHHHHHHcCCccccc-----------------cCCCchhHHhHHHH
Q psy6736 325 STRIPKVQKLLQDFFNGKELNK-----------------SINPDEAVAYGAAV 360 (1023)
Q Consensus 325 ~sr~p~v~~~l~~~f~~~~i~~-----------------~~~pd~aVa~GAa~ 360 (1023)
+|++|.+.+.+++.| +.++.. ..+|..++|.|.++
T Consensus 139 gs~l~gl~~~l~~~l-~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 139 GAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGSTTHHHHHHHHH-CSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred hhhhhhHHHHHHHHH-CCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 999999999999999 454421 12577889999875
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1.1e-13 Score=130.92 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=68.8
Q ss_pred cccccCHHHHHhHhhhhccCcchHHHHHHHHHhCCcCCcceEecCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHH
Q psy6736 79 RLKAVSAQELSRGVKAIFTAPDILKKKTSEDILRKVDGQNEGLIPAYFNISSVKSTKDSGTIAGLNVLRIINEPTAAAIA 158 (1023)
Q Consensus 79 ~~~~~~~~~v~a~~L~~~~~~~~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 158 (1023)
.+..+.+.+..++++ .+++..++...+..+.++|||||++|++.||+++++||+.||+++++||+||+|||+.
T Consensus 63 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv~li~EPtAAAiG 135 (137)
T d1jcea1 63 RDGVIADYTVALVML-------RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIG 135 (137)
T ss_dssp ETTEESSHHHHHHHH-------HHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHH
T ss_pred cCCccCcHHHHHHHH-------HHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEEEEeCCHHHHHhC
Confidence 345678888999998 9999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q psy6736 159 Y 159 (1023)
Q Consensus 159 y 159 (1023)
.
T Consensus 136 a 136 (137)
T d1jcea1 136 S 136 (137)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=5.8e-13 Score=133.36 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=112.3
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++..++|+|+|+||+|+++++ +|.+....+ ..+||++||+.|+..+. . -+..||+
T Consensus 4 Ek~~Gv~vvDiG~~tt~i~i~~--~G~l~~~~~---i~~GG~~iT~~Ia~~l~--------i-----------~~~~AE~ 59 (191)
T d1e4ft2 4 EKDRGVVVVNLGYNFTGLIAYK--NGVPIKISY---VPVGMKHVIKDVSAVLD--------T-----------SFEESER 59 (191)
T ss_dssp HHHHCEEEEEECSSCEEEEEEE--TTEEEEEEE---ESCCHHHHHHHHHHHHT--------C-----------CHHHHHH
T ss_pred hhhCCEEEEEeCCCcEEEEEEE--CCeEEEEEE---EeeChHHHHHHHHHHhc--------c-----------cHHHHHH
Confidence 4556799999999999999976 776655544 45999999999986542 1 1246888
Q ss_pred HhhhcCC-----CceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------ccccceEEEec
Q psy6736 712 AKRTLSS-----STQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMD------KAQIHDIVLVG 780 (1023)
Q Consensus 712 ~K~~Ls~-----~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~i~~V~LvG 780 (1023)
.|+.+.. .....+.+.. .+......+++..+.+++++.++++...+.+.++..... ...+..|+|+|
T Consensus 60 iK~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtG 137 (191)
T d1e4ft2 60 LIITHGNAVYNDLKEEEIQYRG--LDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 137 (191)
T ss_dssp HHHHHCCSCCTTCCCCEEEEEC--TTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEES
T ss_pred HHhhccccccccccchhccccc--ccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEec
Confidence 9987532 1222333332 233445678999999999999999999988888753211 11245699999
Q ss_pred CccCcHHHHHHHHHhhcCcccCC-----------------CCCCccceecchHH
Q psy6736 781 GSTRIPKVQKLLQDFFNGKELNK-----------------SINPDEAVAYGAAV 817 (1023)
Q Consensus 781 G~srip~v~~~l~~~f~~~~~~~-----------------~~~p~~aVa~GAa~ 817 (1023)
|+|++|.+.+.+++.|+ .++.. ..+|..|+|.|.+|
T Consensus 138 Ggs~l~gl~~~l~~~l~-~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 138 GGAKIPRINELATEVFK-SPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGGSTTHHHHHHHHHC-SCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred chhhhhhHHHHHHHHHC-CCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 99999999999999994 33311 12566777777764
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.14 E-value=3.6e-11 Score=116.87 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=101.9
Q ss_pred CCcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHH
Q psy6736 632 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 711 (1023)
Q Consensus 632 ~~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 711 (1023)
+++.++||+|+||||||++++...+..+ +....+....|+.+++..|++++..++. ...... ..+.
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~----~~~~~~---------~~~~ 68 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETG----FVVPFD---------LAQE 68 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCCHH---------HHHH
T ss_pred cCCCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHH----hhhhHH---------HHHH
Confidence 4567899999999999999988544433 2223334578999999999888776653 322211 1111
Q ss_pred HhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccCcHHHHHH
Q psy6736 712 AKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 791 (1023)
Q Consensus 712 ~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~srip~v~~~ 791 (1023)
+.. . . ... .+.. .-.++.+.+.++++++.+...+...+.. ..+.++.|+|+||+|++ +++.
T Consensus 69 ~~~----~-~--~~~----~g~~---~~~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~ 129 (161)
T d2fsja1 69 ALS----H-P--VMF----RQKQ---VGGPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDR 129 (161)
T ss_dssp HTT----S-C--EEE----TTEE---ECSHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGG
T ss_pred HHh----c-c--ccc----cccc---chHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHH
Confidence 111 1 1 111 1111 1124566677777777777777666653 24578999999999987 7899
Q ss_pred HHHhhcCccc-CCCCCCccceecchHHHH
Q psy6736 792 LQDFFNGKEL-NKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 792 l~~~f~~~~~-~~~~~p~~aVa~GAa~~a 819 (1023)
+++.|+...+ ..+.||+.|.|+|--..|
T Consensus 130 l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 130 FEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 9999966543 345799999999976655
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.10 E-value=3.6e-11 Score=116.86 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=103.1
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHH
Q psy6736 176 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 255 (1023)
Q Consensus 176 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~ 255 (1023)
++.++||+|+||||||++++...+..+ +...++....|+.+++..|..++..++. .... .. .++.+
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~----~~~~--~~-------~~~~~ 69 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETG----FVVP--FD-------LAQEA 69 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCC--HH-------HHHHH
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHH----hhhh--HH-------HHHHH
Confidence 677899999999999999998755544 2222334678999999999988887764 2221 11 11111
Q ss_pred hHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHH
Q psy6736 256 KRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 335 (1023)
Q Consensus 256 K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l 335 (1023)
. .. . ... .+. ... .++.+.+.++++++.+...+...+.. ...+++.|+|+||+|.+ +++.+
T Consensus 70 ~----~~-~--~~~----~g~--~~~-~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~l 130 (161)
T d2fsja1 70 L----SH-P--VMF----RQK--QVG-GPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRF 130 (161)
T ss_dssp T----TS-C--EEE----TTE--EEC-SHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGGG
T ss_pred H----hc-c--ccc----ccc--cch-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHHH
Confidence 1 11 1 111 111 111 24566777777777777777766653 24568999999999987 88999
Q ss_pred HHHcCCccc-cccCCCchhHHhHHHHHH
Q psy6736 336 QDFFNGKEL-NKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 336 ~~~f~~~~i-~~~~~pd~aVa~GAa~~a 362 (1023)
++.|+...+ ..+.||..|+|+|--..|
T Consensus 131 ~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 131 EEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHccCCeeecCCCCccchHHHHHHHHH
Confidence 999966544 345699999999987665
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.5e-09 Score=90.24 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=87.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCH
Q psy6736 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 574 (1023)
Q Consensus 495 ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~ 574 (1023)
||+++|++|+...+.+..+|..+|++.++||.+|+|||.++..|.+ +...++++++..+.+.+.++.+||..+ +.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e--~~~~l~~~~k~~i~~~i~~l~~~l~~~---d~ 75 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGE---DK 75 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHTSS---CH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC---CH
Confidence 7899999999999999999999999999999999999999999975 678899999999999999999999765 56
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6736 575 EEFEHKQKELEAICNPIITK 594 (1023)
Q Consensus 575 ~~~~~kl~~L~~~~~pi~~r 594 (1023)
+.++.+.++|+....|+...
T Consensus 76 ~~i~~~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 76 AAIEAKMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78899999999998888754
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=9.5e-09 Score=91.71 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhccCCHHHHHHHHHhhHHHHHHHhhCCccCH
Q psy6736 495 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSTVEDEKLKDKISDAERTQILDKCNDVIKWLDANQLAEK 574 (1023)
Q Consensus 495 ls~~~~~~~~~~~~~~~~~d~~~~~~~~a~N~lE~~iy~~~~~l~~~~~~~~~~~~e~~~l~~~l~~~~~WL~~~~~a~~ 574 (1023)
||+++|++++.....+..+|..+|.+.+++|++|+++|.++..|.. +...++++++..+...+.++..||.++ +.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e--~~~~L~~~e~~~i~~~i~~l~~~l~~~---d~ 75 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD---DV 75 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS---CH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHhhCCHHHHHHHHHHHHHHHHHHHCC---CH
Confidence 7899999999999999999999999999999999999999999975 668899999999999999999999875 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Q psy6736 575 EEFEHKQKELEAICNPIITKLYQGS 599 (1023)
Q Consensus 575 ~~~~~kl~~L~~~~~pi~~r~~e~~ 599 (1023)
..++..++.|+..+.|+..|..+.+
T Consensus 76 ~~I~~~~~~L~~~~~~~a~~~m~~~ 100 (112)
T d1u00a1 76 DAIEQAIKNVDKQTQDFAARRMDQS 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998877643
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.72 E-value=0.00012 Score=66.73 Aligned_cols=161 Identities=21% Similarity=0.267 Sum_probs=85.7
Q ss_pred cEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHHHHHHHhH
Q psy6736 178 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 257 (1023)
Q Consensus 178 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~~K~ 257 (1023)
....|+|+||||||.+++.-.+....+-. +| .|+.++..+...|- .+- +.-||.+|+
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~avhl-AG----AG~mVTmlI~~eLG--------l~d----------~~lAE~IKk 60 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQITAVHL-AG----AGNMVSLLIKTELG--------LED----------LSLAEAIKK 60 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEEEEE-EC----CHHHHHHHHHHHHT--------CSC----------HHHHHHHHH
T ss_pred CceEEEEcCCCccchhhccCCCcEEEEEe-cC----CchhhHHHHHHHhC--------CCc----------HHHHHHHhh
Confidence 34799999999999999987555443322 22 46777766643321 110 114667776
Q ss_pred HcCCCCceEEEE----------ec------------ccCC--ceeEEEecHHHHHHHhHHHHHHH-HHHHHHHHHHcCCC
Q psy6736 258 TLSSSTQASIEI----------DS------------LFEG--VDFYTSITRARFEELNADLFRGT-MEPVEKSLRDAKMD 312 (1023)
Q Consensus 258 ~Ls~~~~~~i~i----------~~------------~~~~--~~~~~~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~ 312 (1023)
---..-+..+.+ +. +.++ ..+.-.++-+++..+=...-++. ..-+.++|+...-.
T Consensus 61 yPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~ 140 (202)
T d1nbwa3 61 YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPG 140 (202)
T ss_dssp SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTT
T ss_pred cchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCC
Confidence 421111110000 00 0000 11122334444443322222222 22344455543322
Q ss_pred --ccCcCeEEEEcCCCCcHHHHHHHHHHcC-------CccccccCCCchhHHhHHHHH
Q psy6736 313 --KAQIHDIVLVGGSTRIPKVQKLLQDFFN-------GKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 313 --~~~i~~V~LvGG~sr~p~v~~~l~~~f~-------~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
..+|..|+|||||+.=.-|-+++.+.+. .-.+.-..-|..|||.|.++.
T Consensus 141 gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 141 GSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 3589999999999987666666666541 224555557999999999863
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.66 E-value=0.00019 Score=65.22 Aligned_cols=61 Identities=30% Similarity=0.343 Sum_probs=43.9
Q ss_pred HHHHHHHHcC--CCccCcCeEEEEcCCCCcHHHHHHHHHHcCCc-------cccccCCCchhHHhHHHHH
Q psy6736 301 PVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 301 ~i~~~l~~~~--~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~-------~i~~~~~pd~aVa~GAa~~ 361 (1023)
-+.++|+... -...+|..|+|||||+.=.-|-+++.+.+..- .+.-..-|..|||.|.++.
T Consensus 129 Na~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 129 NALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp HHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 3445555443 23568999999999999888888888876322 3444557899999999864
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=9.9e-05 Score=76.03 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=96.1
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH--------
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT-------- 707 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-------- 707 (1023)
+=||+|+|++.++|+-|. +|..- ........+||.+++..|.+++.++ .+......+......+..
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG~~l-~~~~~~~~~GG~~lt~~L~~~L~~~---~~~~~~~~~~~~~~~~ke~~~~v~~d 77 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EGYVI-GSCIKHIPIAGRDITYFIQQLLRDR---EVGIPPEQSLETAKAVKERYSYVCPD 77 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHHHTT---CCCCCGGGHHHHHHHHHHHHCCCCSC
T ss_pred EEEEEEcCCCcEEEEEEE--CCEEc-hhheEEEeCcHHHHHHHHHHHHHHc---CCCCCcHHHHHHHHhHHhhhcccccc
Confidence 358999999999988765 55322 1111225699999999988877532 111111111111111111
Q ss_pred ---HHHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHH----------HHHHHHHHHHHHHcCCCc--cc
Q psy6736 708 ---ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLF----------RGTMEPVEKSLRDAKMDK--AQ 772 (1023)
Q Consensus 708 ---~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~----------~~~~~~i~~~l~~~~~~~--~~ 772 (1023)
..++....-+.. .......+........+.+..+.|. ..+.+| ..+.+.|.+++..+..+. .=
T Consensus 78 ~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~er~~-~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L 155 (258)
T d1k8ka2 78 LVKEFNKYDTDGSKW-IKQYTGINAISKKEFSIDVGYERFL-GPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPL 155 (258)
T ss_dssp HHHHHHHHHHSGGGT-CEEEEEECTTTCCEEEEEECTHHHH-HHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHH
T ss_pred hHHHHHhhccccccc-ccccccccccCCCCeEEecCcccee-ccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHH
Confidence 111111111111 1223333333334556777777663 223333 235667777777654322 22
Q ss_pred cceEEEecCccCcHHHHHHHHHhhcC-----------------------cccCCCCCCccceecchHHHHH
Q psy6736 773 IHDIVLVGGSTRIPKVQKLLQDFFNG-----------------------KELNKSINPDEAVAYGAAVQAA 820 (1023)
Q Consensus 773 i~~V~LvGG~srip~v~~~l~~~f~~-----------------------~~~~~~~~p~~aVa~GAa~~a~ 820 (1023)
...|+|+||+|.+|.+.+.|.+.+.. .++..+.++..++=+||+++|.
T Consensus 156 ~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 156 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 46799999999999999988765511 1122233455677788888874
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00012 Score=73.78 Aligned_cols=172 Identities=21% Similarity=0.310 Sum_probs=96.0
Q ss_pred eEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcch--hHHHHHHHHH------
Q psy6736 636 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT--NKRALRRLRT------ 707 (1023)
Q Consensus 636 ~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~~------ 707 (1023)
+=||+|+|++.+.|+-|. +|.. +........+||+++++.|.+++...- .+... +......+++
T Consensus 3 TglVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~~~~~~~~~~~ke~~~~~~ 74 (225)
T d2fxua2 3 TGIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVTTAEREIVRDIKEKLCYVA 74 (225)
T ss_dssp SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCSHHHHHHHHHHHHHHCCCC
T ss_pred EEEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhcc-----CCcCCHHHHHHHHHHHHHHhhcc
Confidence 358999999999888765 5532 112222256999999999988876532 11111 1111111111
Q ss_pred ---HHHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--cccc
Q psy6736 708 ---ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKMD--KAQI 773 (1023)
Q Consensus 708 ---~~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~---------~~~~~i~~~l~~~~~~--~~~i 773 (1023)
..|..+...+........+ .+|. .+.+..+.|. ..+.+|+ .+.+.|.+.+..+..+ +.-.
T Consensus 75 ~d~~~e~~~~~~~~~~~~~~~l---pdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~ 148 (225)
T d2fxua2 75 LDFENEMATAASSSSLEKSYEL---PDGQ--VITIGNERFR-CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLY 148 (225)
T ss_dssp SSHHHHHHHHHHCSTTCEEEEC---TTSC--EEEESTHHHH-HHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHH
T ss_pred cchhHHHhhcccCcccceeEEC---CCCC--EEEEchHhcc-ccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhh
Confidence 1122222222222333333 2333 4556655543 2333443 3556666666543221 1123
Q ss_pred ceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHHHH
Q psy6736 774 HDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAAI 821 (1023)
Q Consensus 774 ~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a~~ 821 (1023)
..|+|+||+|.+|.+.++|.+.+.. .++..+.++..++=+||+++|..
T Consensus 149 ~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 149 ANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp TCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred cCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 6899999999999999999875511 23344456667888899999853
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.57 E-value=0.00027 Score=64.28 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=43.3
Q ss_pred HHHHHHHcCC--CccccceEEEecCccCcHHHHHHHHHhhc-------CcccCCCCCCccceecchHHH
Q psy6736 759 VEKSLRDAKM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFN-------GKELNKSINPDEAVAYGAAVQ 818 (1023)
Q Consensus 759 i~~~l~~~~~--~~~~i~~V~LvGG~srip~v~~~l~~~f~-------~~~~~~~~~p~~aVa~GAa~~ 818 (1023)
+.++|+...- +..+|..|+|||||+.=.-|-+++.+.+. .-.+.-..-|..|||.|.++.
T Consensus 130 a~RaL~~vsp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 130 CLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp HHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 4455554332 23579999999999998877787777662 235666778999999998764
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.50 E-value=0.0004 Score=63.02 Aligned_cols=62 Identities=29% Similarity=0.323 Sum_probs=46.1
Q ss_pred HHHHHHHHcC--CCccccceEEEecCccCcHHHHHHHHHhhcC-------cccCCCCCCccceecchHHHH
Q psy6736 758 PVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 758 ~i~~~l~~~~--~~~~~i~~V~LvGG~srip~v~~~l~~~f~~-------~~~~~~~~p~~aVa~GAa~~a 819 (1023)
-+.++|+... -+..+|..|+|||||+.=.-|-+++.+.+.. -.+.-..-|..|||.|.++.-
T Consensus 129 Na~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y 199 (203)
T d2d0oa3 129 NALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSW 199 (203)
T ss_dssp HHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHh
Confidence 3445666542 2346899999999999998888999888732 345666789999999988643
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=7.1e-05 Score=64.10 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 978 ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
||++||++|++...+++.+|+.+|++.++||.+|+|||.++..+
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l 44 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV 44 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999998754
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.44 E-value=0.00023 Score=73.18 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=94.6
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccc--cHHHHHHHHH-------
Q psy6736 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT--NKRALRRLRT------- 250 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~--~~~~~~~L~~------- 250 (1023)
=+|+|+|++.|+|+-+. +|..- ........+||.+++..|.++|.+. +..... +......+..
T Consensus 5 GlVVDiG~~~T~v~PV~--eG~~l-~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~~~~~~~~ke~~~~v~~ 76 (258)
T d1k8ka2 5 GTVIDSGDGVTHVIPVA--EGYVI-GSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQSLETAKAVKERYSYVCP 76 (258)
T ss_dssp EEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGHHHHHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEEc-hhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHHHHHHHhHHhhhccccc
Confidence 49999999999998764 23211 1111225799999999988877532 111111 1111111111
Q ss_pred ----HHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHH---HHhHHH------HHHHHHHHHHHHHHcCCCcc--C
Q psy6736 251 ----ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE---ELNADL------FRGTMEPVEKSLRDAKMDKA--Q 315 (1023)
Q Consensus 251 ----~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~~~~~~~--~ 315 (1023)
+.++....-+ ..................+.+..+.|. -++.|- ...+.+.|.+++..+..... =
T Consensus 77 d~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L 155 (258)
T d1k8ka2 77 DLVKEFNKYDTDGS-KWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPL 155 (258)
T ss_dssp CHHHHHHHHHHSGG-GTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHH
T ss_pred chHHHHHhhccccc-ccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHH
Confidence 1111111111 111222333333334456667666663 122221 12466777888877654322 2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHHcCC-----------------------ccccccCCCchhHHhHHHHHHH
Q psy6736 316 IHDIVLVGGSTRIPKVQKLLQDFFNG-----------------------KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 316 i~~V~LvGG~sr~p~v~~~l~~~f~~-----------------------~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
...|+|+||+|.+|.+.++|.+.+.. ..+..+.++..++=.||+++|.
T Consensus 156 ~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 156 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 36699999999999999988655410 1222333566788888888874
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=0.00026 Score=71.14 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=94.1
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCcccc--HHHHHHHHH-------
Q psy6736 180 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN--KRALRRLRT------- 250 (1023)
Q Consensus 180 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~--~~~~~~L~~------- 250 (1023)
=+|+|+|++.|.|+-+. +|.. +........+||.++++.|.++|.... .+.... ......+..
T Consensus 4 glVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~~~~~~~~~~~ke~~~~~~~ 75 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVTTAEREIVRDIKEKLCYVAL 75 (225)
T ss_dssp EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCSHHHHHHHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhcc-----CCcCCHHHHHHHHHHHHHHhhccc
Confidence 49999999999988764 3321 111112257999999999988876432 111111 111111111
Q ss_pred --HHHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHH---HHhHHH-----HHHHHHHHHHHHHHcCCC--ccCcCe
Q psy6736 251 --ACERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFE---ELNADL-----FRGTMEPVEKSLRDAKMD--KAQIHD 318 (1023)
Q Consensus 251 --~ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e---~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ 318 (1023)
..|..+...+........+ .+|. .+++..+.|. -+++|. ...+.+.|.+++..+... +.-...
T Consensus 76 d~~~e~~~~~~~~~~~~~~~l---pdg~--~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~n 150 (225)
T d2fxua2 76 DFENEMATAASSSSLEKSYEL---PDGQ--VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYAN 150 (225)
T ss_dssp SHHHHHHHHHHCSTTCEEEEC---TTSC--EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTC
T ss_pred chhHHHhhcccCcccceeEEC---CCCC--EEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcC
Confidence 1122222222222222222 2333 3455554442 223332 123556666666654321 112367
Q ss_pred EEEEcCCCCcHHHHHHHHHHc----CC---ccccccCCCchhHHhHHHHHHH
Q psy6736 319 IVLVGGSTRIPKVQKLLQDFF----NG---KELNKSINPDEAVAYGAAVQAA 363 (1023)
Q Consensus 319 V~LvGG~sr~p~v~~~l~~~f----~~---~~i~~~~~pd~aVa~GAa~~a~ 363 (1023)
|+|+||+|.+|.+.++|.+.+ +. ..+..+.++..++=.||+++|.
T Consensus 151 Ivl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilas 202 (225)
T d2fxua2 151 NVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 202 (225)
T ss_dssp EEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred EEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhc
Confidence 999999999999999988754 11 2344455677888999999885
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.15 E-value=0.00057 Score=66.50 Aligned_cols=147 Identities=19% Similarity=0.291 Sum_probs=82.7
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH---------
Q psy6736 638 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA--------- 708 (1023)
Q Consensus 638 lV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--------- 708 (1023)
||+|+|.+.+.|+-+. +|..- ........+||+++++.|.+.+.+.- +......+......+...
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~l-~~a~~~~~igG~~lt~~l~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~v~~~~~ 75 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFSL-PHLTRRLDIAGRDITRYLIKLLLLRG---YAFNHSADFETVRMIKEKLCYVGYNIE 75 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEEC-STTCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTTHHHHHHHHHHHCCCCSSHH
T ss_pred EEEEcCCCcEEEEEeE--CCEEc-ccceEEEeccHHHHHHHHHHHHHhcC---CcccchHHHHHHHHHHhhhhhhcccHH
Confidence 6999999999887665 55321 11112256999999999887765421 111111111111111111
Q ss_pred HHHHhhhcCCCceeEEEEecccCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCCc--cccceEE
Q psy6736 709 CERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFRG---------TMEPVEKSLRDAKMDK--AQIHDIV 777 (1023)
Q Consensus 709 ~e~~K~~Ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~---------~~~~i~~~l~~~~~~~--~~i~~V~ 777 (1023)
.+..+...+........+ .++. .+.+..+.|. ..+.+|+. +.+.|.+++..+..+. .=...|+
T Consensus 76 ~e~~~~~~~~~~~~~~~l---pdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIv 149 (190)
T d1k8kb1 76 QEQKLALETTVLVESYTL---PDGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIV 149 (190)
T ss_dssp HHHHHHHHCSTTCEEEEC---TTSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCE
T ss_pred HHHHhhhcccceeeeeec---CCCc--EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEE
Confidence 111111222222233332 2333 4567776655 34455543 6677888887765432 2346799
Q ss_pred EecCccCcHHHHHHHHHhh
Q psy6736 778 LVGGSTRIPKVQKLLQDFF 796 (1023)
Q Consensus 778 LvGG~srip~v~~~l~~~f 796 (1023)
|+||+|.+|.+.+.|...+
T Consensus 150 l~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 150 LSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EESGGGCSTTHHHHHHHHH
T ss_pred EECcccCCCCHHHHHHHHH
Confidence 9999999999999998765
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.10 E-value=0.0015 Score=66.60 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHHHHHHH
Q psy6736 291 NADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 365 (1023)
Q Consensus 291 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~~a~~l 365 (1023)
+...+..+...+...+.. ..+++.|++.||.++.+++++.+++.+ +.++..+.+|+.+.|+|||++|..-
T Consensus 187 ~~~~~~~~~~~~~~~~~~----~~~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 187 IAGIHRSVASRVIGLANR----VGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCCCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----ccCCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 334444444444444433 234578999999999999999999999 7788889999999999999999754
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00037 Score=61.16 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q psy6736 978 LSKEDIERMVNDAEKYKAEDEKQKAVISAKNSLESYCFNMKSKG 1021 (1023)
Q Consensus 978 ls~eei~~~~~~~~~~~~~d~~~~~~~~akN~lE~~iy~~r~k~ 1021 (1023)
||++||++|++...+++.+|+.+|++.++||.+|++||.++..+
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L 44 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 44 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999998765
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.89 E-value=0.0011 Score=64.54 Aligned_cols=147 Identities=19% Similarity=0.288 Sum_probs=79.3
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHhhhccCccccHHHHHHHHH---------H
Q psy6736 181 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT---------A 251 (1023)
Q Consensus 181 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~---------~ 251 (1023)
||+|+|++.|.++-+- +|..- ........+||.++++.|.+.+.+.-. .............+.. .
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~l-~~a~~~~~igG~~lt~~l~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~ 75 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFSL-PHLTRRLDIAGRDITRYLIKLLLLRGY---AFNHSADFETVRMIKEKLCYVGYNIE 75 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEEC-STTCEEESCCHHHHHHHHHHHHHHTTC---CCCTTTTHHHHHHHHHHHCCCCSSHH
T ss_pred EEEEcCCCcEEEEEeE--CCEEc-ccceEEEeccHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHhhhhhhcccHH
Confidence 6999999999888664 22211 111112569999999998877653211 0111111111111111 0
Q ss_pred HHHHhHHcCCCCceEEEEecccCCceeEEEecHHHHHHHhHHHHH---------HHHHHHHHHHHHcCCCc--cCcCeEE
Q psy6736 252 CERAKRTLSSSTQASIEIDSLFEGVDFYTSITRARFEELNADLFR---------GTMEPVEKSLRDAKMDK--AQIHDIV 320 (1023)
Q Consensus 252 ae~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~---------~i~~~i~~~l~~~~~~~--~~i~~V~ 320 (1023)
.+..+...+........+ .++. .+.+..+.|. +.+.+++ .+.+.|.+++..+.... .=...|+
T Consensus 76 ~e~~~~~~~~~~~~~~~l---pdg~--~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIv 149 (190)
T d1k8kb1 76 QEQKLALETTVLVESYTL---PDGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIV 149 (190)
T ss_dssp HHHHHHHHCSTTCEEEEC---TTSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCE
T ss_pred HHHHhhhcccceeeeeec---CCCc--EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEE
Confidence 111122222222222222 2333 3556666554 2233332 36778888888775431 2236799
Q ss_pred EEcCCCCcHHHHHHHHHHc
Q psy6736 321 LVGGSTRIPKVQKLLQDFF 339 (1023)
Q Consensus 321 LvGG~sr~p~v~~~l~~~f 339 (1023)
|+||+|.+|.+.++|+..+
T Consensus 150 l~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 150 LSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EESGGGCSTTHHHHHHHHH
T ss_pred EECcccCCCCHHHHHHHHH
Confidence 9999999999999998765
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.13 E-value=0.0026 Score=64.69 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=45.1
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHH
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 822 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l 822 (1023)
+++.|++.||.++.|.+++.+++.+ +.++..+.+|+.+.|+|||++|...
T Consensus 207 ~~~~Iv~gGGv~~~~~~~~~l~~~l-~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 207 IVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp CCSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred CCCcEEEEccccccHHHHHHHHHHH-CCCEEcCCCccHHHHHHHHHHHHHH
Confidence 4678999999999999999999999 6778888999999999999999753
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.13 E-value=0.032 Score=55.49 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=55.9
Q ss_pred ecHHHHHH-HhHHHHHHHHHHHHHHHHHcCCCccCcCeEEEEcCCCCcHHHHHHHHHHcCCccccccCCCchhHHhHHHH
Q psy6736 282 ITRARFEE-LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 360 (1023)
Q Consensus 282 itr~~~e~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~pd~aVa~GAa~ 360 (1023)
-+|.++-. +++.+.-.+...++..-+..+.. ++.|.+.||.++++.+.+.+.+.+ +.++....+ .++.++|||+
T Consensus 116 ~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~---~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~-~e~~alGaA~ 190 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGID---IPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAAN-LETTALGAAY 190 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESC-CCTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEecCcchhCHHHHhhhhhcc-ceeeeeccc-cchHHHHHHH
Confidence 35555532 23333333333333333334543 688999999999999999999999 788876644 4689999999
Q ss_pred HHHHHhC
Q psy6736 361 QAAILHG 367 (1023)
Q Consensus 361 ~a~~l~~ 367 (1023)
.|+.-.+
T Consensus 191 la~~~~G 197 (235)
T d1r59o2 191 LAGLAVG 197 (235)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9987665
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.18 Score=48.75 Aligned_cols=47 Identities=26% Similarity=0.215 Sum_probs=34.8
Q ss_pred CcCeEEEEcCCCCcHHHHHHHHH----Hc--CCccccccCCCchhHHhHHHHH
Q psy6736 315 QIHDIVLVGGSTRIPKVQKLLQD----FF--NGKELNKSINPDEAVAYGAAVQ 361 (1023)
Q Consensus 315 ~i~~V~LvGG~sr~p~v~~~l~~----~f--~~~~i~~~~~pd~aVa~GAa~~ 361 (1023)
.++.|+++||.+..-.+++.+.+ ++ .+.++..+.|...+.|.||.+.
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~ 209 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLE 209 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHH
Confidence 46889999998877666666543 33 2446666778899999999875
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=93.93 E-value=0.033 Score=55.35 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=43.2
Q ss_pred ccceEEEecCccCcHHHHHHHHHhhcCcccCCCCCCccceecchHHHHHHHhC
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 824 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~~f~~~~~~~~~~p~~aVa~GAa~~a~~l~~ 824 (1023)
.++.|.+.||.++.|.+.+.+.+.+ +.++....++ ++.|+|||+.|+.-.+
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advl-g~~v~~~~~~-e~~alGaA~la~~~~G 197 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRAANL-ETTALGAAYLAGLAVG 197 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHH-SSEEEEESCC-CTTTHHHHHHHHHHHT
T ss_pred CCcEEEecCcchhCHHHHhhhhhcc-ceeeeecccc-chHHHHHHHHHHHHcC
Confidence 4678999999999999999999999 6676655444 6899999999987665
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.21 Score=48.25 Aligned_cols=48 Identities=25% Similarity=0.202 Sum_probs=34.8
Q ss_pred ccceEEEecCccCcHHHHHHHHH----hh--cCcccCCCCCCccceecchHHHH
Q psy6736 772 QIHDIVLVGGSTRIPKVQKLLQD----FF--NGKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 772 ~i~~V~LvGG~srip~v~~~l~~----~f--~~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
.++.|+++||.+..-.+++.+.+ ++ .+.++..+.|...+-|.||++.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 46789999998877666666543 33 23455667788999999988753
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=87.97 E-value=0.38 Score=45.11 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=30.4
Q ss_pred CcceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHH
Q psy6736 633 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 679 (1023)
Q Consensus 633 ~~~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l 679 (1023)
++.++||+|+|||++.+++++ ++.+....+ -.+|.-.+.+.+
T Consensus 1 Pe~~~lviDIGGGStEli~~~--~~~i~~~~S---l~lG~vrl~e~f 42 (180)
T d1t6ca2 1 PEGEVCVVDQGGGSTEYVFGK--GYKVREVIS---LPIGIVNLTETF 42 (180)
T ss_dssp CCSEEEEEEEETTEEEEEEEE--TTEEEEEEE---ECCCHHHHHHHH
T ss_pred CCCCEEEEEeCCChHhhEEee--CCceeeEEE---eecceEEeeccc
Confidence 356899999999999998875 665444333 468987775544
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=87.00 E-value=0.36 Score=47.88 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=38.7
Q ss_pred CcCeEEEEcCC-CCcHHHHHHHHHHc--CCccccccCCCchhHHhHHHHHH
Q psy6736 315 QIHDIVLVGGS-TRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAVQA 362 (1023)
Q Consensus 315 ~i~~V~LvGG~-sr~p~v~~~l~~~f--~~~~i~~~~~pd~aVa~GAa~~a 362 (1023)
+++.|++.||. +..|.+++.+++++ .+.++..+.+++.+-|+||++++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 45789999985 67999999999887 34566677789999999998764
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=85.09 E-value=0.3 Score=48.51 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=38.6
Q ss_pred ccceEEEecCc-cCcHHHHHHHHHhhc--CcccCCCCCCccceecchHHHH
Q psy6736 772 QIHDIVLVGGS-TRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQA 819 (1023)
Q Consensus 772 ~i~~V~LvGG~-srip~v~~~l~~~f~--~~~~~~~~~p~~aVa~GAa~~a 819 (1023)
+++.|++.||. +..|.+++.+++++. +.++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 45689999985 679999999999873 3466677789999999998764
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=82.59 E-value=0.69 Score=43.21 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=28.6
Q ss_pred CcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHH
Q psy6736 177 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 222 (1023)
Q Consensus 177 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l 222 (1023)
+..++|+|+|||+|.+++++ ++.+... ....+|...+.+.+
T Consensus 2 e~~~lviDIGGGStEli~~~--~~~i~~~---~Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK--GYKVREV---ISLPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE--TTEEEEE---EEECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEee--CCceeeE---EEeecceEEeeccc
Confidence 35789999999999999875 3333221 12578988776654
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=82.43 E-value=1 Score=41.66 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCcHHHHHHHH
Q psy6736 635 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 679 (1023)
Q Consensus 635 ~~vlV~D~GggT~dvsi~~~~~~~~~v~~~~gd~~lGG~~~D~~l 679 (1023)
.+.||+|+|||++.+++++ ++.+.-..+ -.+|.-.+.+.+
T Consensus 2 gr~Lv~DIGGGStEl~~~~--~~~~~~~~S---l~lG~vrl~e~~ 41 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE--NFEPILVES---RRMGCVSFAQLY 41 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE--TTEEEEEEE---ESCCHHHHHHHH
T ss_pred CCEEEEEeCCChhheEEEE--CCcEeEEEE---eccceEEeeccc
Confidence 4689999999999999765 665543333 468987765544
|