Psyllid ID: psy6779

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA
cccccccccccccccEEEEcHHHHHHHHHccccEEEEEEccHHHHccccccccccEEEEcHHHHHHHHccccccEEEEEEEcccccccccccccccEEEEEccccccccHHHHHHHHHHHccccEEEccccccccccHHHcccc
ccHHHccccccccccEEEcHHHHHHHHHHccccEEEEEEEcHHHcccccHccccEEEEEcHHHHHHHHcccccccEEEEEEcccccccccccccccEEEEEEccccccccHHHHHHHHHccccEEEEEcccccccccHEEEccc
MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDilkelplpedvpqhrvdykniqlwsdlvtppgiigifelpahpiasidpaslplnivcdnirdpgnmgSILRVCAAVGARQVVcsrgcvdiydnkvIRAAA
mvymksrkqrekkgwlmlegKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQvvcsrgcvdiydNKVIRAAA
MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA
*************GWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVI****
MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRA**
***********KKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA
*V***SRK*REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAA*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query144 2.2.26 [Sep-21-2011]
Q9HC36 420 RNA methyltransferase-lik yes N/A 0.986 0.338 0.48 1e-31
Q6GPJ4 419 RNA methyltransferase-lik N/A N/A 0.958 0.329 0.452 2e-31
Q5ND52 418 RNA methyltransferase-lik yes N/A 0.986 0.339 0.466 7e-31
A4QNL8 415 RNA methyltransferase-lik yes N/A 0.958 0.332 0.438 5e-30
Q566V3 435 RNA methyltransferase-lik yes N/A 0.965 0.319 0.448 4e-29
Q9VW14 407 RNA methyltransferase-lik yes N/A 0.993 0.351 0.354 4e-24
A1L2E4 445 RNA methyltransferase-lik no N/A 0.944 0.305 0.395 3e-23
P74261 274 Uncharacterized tRNA/rRNA N/A N/A 0.965 0.507 0.267 1e-08
P94538248 Uncharacterized tRNA/rRNA yes N/A 0.902 0.524 0.229 7e-08
Q9F5K6 287 23S rRNA (uridine(2479)-2 N/A N/A 0.958 0.480 0.241 2e-06
>sp|Q9HC36|RMTL1_HUMAN RNA methyltransferase-like protein 1 OS=Homo sapiens GN=RNMTL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 102/150 (68%), Gaps = 8/150 (5%)

Query: 1   MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
           M  +KSR  REK+G ++LEG+R++ DALKA    KM FFS+ + LKELP+ +   V   +
Sbjct: 108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167

Query: 59  VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
           V +++I+ WSDLVTP GI+GIF  P H     P   +   SLPL ++CDN+RDPGN+G+I
Sbjct: 168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQ-HSLPLLLICDNLRDPGNLGTI 226

Query: 114 LRVCAAVGARQVVCSRGCVDIYDNKVIRAA 143
           LR  A  G  +V+ ++GCVD ++ KV+RA 
Sbjct: 227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRAG 256
Probable RNA methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q6GPJ4|RMTL1_XENLA RNA methyltransferase-like protein 1 OS=Xenopus laevis GN=rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ND52|RMTL1_MOUSE RNA methyltransferase-like protein 1 OS=Mus musculus GN=Rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|A4QNL8|RMTL1_XENTR RNA methyltransferase-like protein 1 OS=Xenopus tropicalis GN=rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|Q566V3|RML1A_DANRE RNA methyltransferase-like protein 1A OS=Danio rerio GN=rnmtl1a PE=2 SV=1 Back     alignment and function description
>sp|Q9VW14|RMTL1_DROME RNA methyltransferase-like protein 1 homolog OS=Drosophila melanogaster GN=CG14100 PE=2 SV=1 Back     alignment and function description
>sp|A1L2E4|RML1B_DANRE RNA methyltransferase-like protein 1B OS=Danio rerio GN=rnmtl1b PE=2 SV=2 Back     alignment and function description
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1673 PE=3 SV=1 Back     alignment and function description
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2 Back     alignment and function description
>sp|Q9F5K6|AVRB_STRVR 23S rRNA (uridine(2479)-2'-O)-methyltransferase OS=Streptomyces viridochromogenes GN=aviRb PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
156545324 458 PREDICTED: RNA methyltransferase-like pr 0.979 0.307 0.479 2e-33
383863316 422 PREDICTED: RNA methyltransferase-like pr 1.0 0.341 0.479 2e-33
332030022 438 RNA methyltransferase-like protein 1 [Ac 0.979 0.321 0.455 1e-32
328779499 417 PREDICTED: RNA methyltransferase-like pr 1.0 0.345 0.479 1e-32
322797134 430 hypothetical protein SINV_11142 [Solenop 0.986 0.330 0.458 2e-32
307197937 436 RNA methyltransferase-like protein 1 [Ha 0.979 0.323 0.441 6e-32
340724742 418 PREDICTED: RNA methyltransferase-like pr 0.993 0.342 0.489 8e-32
307188520 459 RNA methyltransferase-like protein 1 [Ca 0.993 0.311 0.447 9e-32
115649674 449 PREDICTED: RNA methyltransferase-like pr 0.972 0.311 0.451 1e-31
189241058 403 PREDICTED: similar to RNA methyltransfer 0.979 0.349 0.455 2e-31
>gi|156545324|ref|XP_001605709.1| PREDICTED: RNA methyltransferase-like protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/144 (47%), Positives = 102/144 (70%), Gaps = 3/144 (2%)

Query: 1   MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPEDVPQ-HRV 59
           M+ ++S+KQR+K   ++LEG R + DA+KA +  + +FFS+W+ +K L       +  +V
Sbjct: 143 MMSLRSKKQRKKDELILLEGVRFIEDAIKAGIVPQYIFFSRWEDIKHLDFSNTGTKLFKV 202

Query: 60  DYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
            Y+NIQLWS L T PG++GIF+ P  P+  +  +SLP+ I+CDN+RDPGNMGSILR  A 
Sbjct: 203 TYRNIQLWSTLTTSPGVMGIFKRP-EPL-KVKKSSLPITIICDNVRDPGNMGSILRAAAG 260

Query: 120 VGARQVVCSRGCVDIYDNKVIRAA 143
           VG  +VV ++GCVD +D KV+R+A
Sbjct: 261 VGVEKVVLTKGCVDFWDTKVLRSA 284

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383863316|ref|XP_003707127.1| PREDICTED: RNA methyltransferase-like protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340724742|ref|XP_003400740.1| PREDICTED: RNA methyltransferase-like protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|115649674|ref|XP_782724.2| PREDICTED: RNA methyltransferase-like protein 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium castaneum] gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
UNIPROTKB|Q9HC36 420 RNMTL1 "RNA methyltransferase- 0.979 0.335 0.483 8.8e-31
MGI|MGI:1914640 418 Rnmtl1 "RNA methyltransferase 0.979 0.337 0.469 3e-30
UNIPROTKB|E2QXE5 423 RNMTL1 "Uncharacterized protei 0.986 0.335 0.466 3.8e-30
UNIPROTKB|F1RHK0 424 RNMTL1 "Uncharacterized protei 0.986 0.334 0.459 4.9e-30
UNIPROTKB|E1BBM0 417 RNMTL1 "Uncharacterized protei 0.986 0.340 0.445 1e-29
UNIPROTKB|F1NG21 387 RNMTL1 "Uncharacterized protei 0.958 0.356 0.457 6.4e-28
ZFIN|ZDB-GENE-050417-184 443 rnmtl1a "RNA methyltransferase 0.965 0.313 0.448 1e-27
UNIPROTKB|I3L443177 RNMTL1 "RNA methyltransferase- 0.895 0.728 0.474 1.5e-26
FB|FBgn0036889 407 CG14100 [Drosophila melanogast 0.958 0.339 0.366 1.1e-22
ZFIN|ZDB-GENE-030131-158 449 rnmtl1b "RNA methyltransferase 0.944 0.302 0.402 6e-22
UNIPROTKB|Q9HC36 RNMTL1 "RNA methyltransferase-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 72/149 (48%), Positives = 102/149 (68%)

Query:     1 MVYMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPE--DVPQHR 58
             M  +KSR  REK+G ++LEG+R++ DALKA    KM FFS+ + LKELP+ +   V   +
Sbjct:   108 MTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIK 167

Query:    59 VDYKNIQLWSDLVTPPGIIGIFELPAH-----PIASIDPASLPLNIVCDNIRDPGNMGSI 113
             V +++I+ WSDLVTP GI+GIF  P H     P   +   SLPL ++CDN+RDPGN+G+I
Sbjct:   168 VKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQH-SLPLLLICDNLRDPGNLGTI 226

Query:   114 LRVCAAVGARQVVCSRGCVDIYDNKVIRA 142
             LR  A  G  +V+ ++GCVD ++ KV+RA
Sbjct:   227 LRSAAGAGCSKVLLTKGCVDAWEPKVLRA 255
GO:0003723 "RNA binding" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
GO:0008173 "RNA methyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
MGI|MGI:1914640 Rnmtl1 "RNA methyltransferase like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXE5 RNMTL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHK0 RNMTL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBM0 RNMTL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG21 RNMTL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-184 rnmtl1a "RNA methyltransferase like 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3L443 RNMTL1 "RNA methyltransferase-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0036889 CG14100 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-158 rnmtl1b "RNA methyltransferase like 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
COG0566 260 COG0566, SpoU, rRNA methylases [Translation, ribos 6e-26
pfam00588142 pfam00588, SpoU_methylase, SpoU rRNA Methylase fam 1e-14
smart0096770 smart00967, SpoU_sub_bind, RNA 2'-O ribose methylt 3e-05
TIGR00186237 TIGR00186, rRNA_methyl_3, rRNA methylase, putative 7e-05
pfam0803274 pfam08032, SpoU_sub_bind, RNA 2'-O ribose methyltr 0.001
>gnl|CDD|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 98.1 bits (245), Expect = 6e-26
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 7   RKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-----WDILKELPLPEDVPQHRVDY 61
           +K R + G  ++EG+  +++AL +  K+  +  ++     ++ L  L   + +P + V  
Sbjct: 13  KKLRGRAGEFLIEGEHAVLEALASGPKIVRILVTEGRLPRFEELLALAAAKGIPVYVVSE 72

Query: 62  KNIQLWSDLVTPPGIIGIFELP--AHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAA 119
             +   S      GI+ + +          +D  + PL +V D + DP N+G+I+R   A
Sbjct: 73  AILDKLSGTENHQGIVAVVKKRRYPLLDDLLDAEAQPLLLVLDGVTDPHNLGAIIRTADA 132

Query: 120 VGARQVVCSRGCVDIYDNKVIRAAA 144
            G   V+  +   D  + KVIRA+A
Sbjct: 133 FGVDGVILPKRRADPLNPKVIRASA 157

Length = 260
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family Back     alignment and domain information
>gnl|CDD|214943 smart00967, SpoU_sub_bind, RNA 2'-O ribose methyltransferase substrate binding Back     alignment and domain information
>gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3 Back     alignment and domain information
>gnl|CDD|203842 pfam08032, SpoU_sub_bind, RNA 2'-O ribose methyltransferase substrate binding Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 144
COG0566 260 SpoU rRNA methylases [Translation, ribosomal struc 100.0
PRK11181 244 23S rRNA (guanosine-2'-O-)-methyltransferase; Prov 99.98
PRK10864 346 putative methyltransferase; Provisional 99.97
TIGR00186237 rRNA_methyl_3 rRNA methylase, putative, group 3. t 99.97
KOG2506|consensus 371 99.96
PRK10358 157 putative rRNA methylase; Provisional 99.67
KOG0838|consensus 271 99.65
TIGR00185 153 rRNA_methyl_2 rRNA methylase, putative, group 2. t 99.62
PF00588142 SpoU_methylase: SpoU rRNA Methylase family; InterP 99.61
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 99.57
PRK11081 229 tRNA guanosine-2'-O-methyltransferase; Provisional 99.36
PRK15114 245 tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr 99.31
TIGR00050 233 rRNA_methyl_1 RNA methyltransferase, TrmH family, 99.24
PRK10433 228 putative RNA methyltransferase; Provisional 98.56
COG0219 155 CspR Predicted rRNA methylase (SpoU class) [Transl 97.74
PF04705115 TSNR_N: Thiostrepton-resistance methylase, N termi 97.29
COG0565 242 LasT rRNA methylase [Translation, ribosomal struct 94.46
PRK0101899 50S ribosomal protein L30e; Reviewed 94.39
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 94.11
PTZ00106108 60S ribosomal protein L30; Provisional 91.48
PRK0728398 hypothetical protein; Provisional 91.4
PRK07714100 hypothetical protein; Provisional 91.19
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 90.73
KOG0839|consensus 1477 90.45
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 89.58
PRK05583104 ribosomal protein L7Ae family protein; Provisional 89.56
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 89.15
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 89.09
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 88.73
PRK0668382 hypothetical protein; Provisional 88.0
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-36  Score=235.72  Aligned_cols=135  Identities=26%  Similarity=0.443  Sum_probs=118.3

Q ss_pred             hhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc--ccc---CCCCCCCCEEEeCHHHHHhhcCCCCCCceEEEEeCCC
Q psy6779          10 REKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI--LKE---LPLPEDVPQHRVDYKNIQLWSDLVTPPGIIGIFELPA   84 (144)
Q Consensus        10 R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~--~~~---l~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~~   84 (144)
                      |+++++|++||.|+|+++++++..+.++|+++...  +.+   .+...+++++.++++.+++++++.+|||++|+++++.
T Consensus        16 r~~~~~~~~~G~~~v~~al~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~   95 (260)
T COG0566          16 RGRAGEFLIEGEHAVLEALASGPKIVRILVTEGRLPRFEELLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRR   95 (260)
T ss_pred             hcccCcEEEeeHHHHHHHHhcCCCceEEEEecccchhHHHHHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEeccc
Confidence            78889999999999999999998999999998743  222   2345689999999999999999999999999999988


Q ss_pred             CCCCC-CCC-CCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779          85 HPIAS-IDP-ASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA  144 (144)
Q Consensus        85 ~~~~~-~~~-~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~  144 (144)
                      +...+ ... ..++++|+||+||||||+|||||||+|||+++||++++|+|+|||+++|+||
T Consensus        96 ~~~~~~~~~~~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~  157 (260)
T COG0566          96 YPLLDDLLDAEAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASA  157 (260)
T ss_pred             ccchhhhhhcccCCEEEEEecCcCCcchhhHHhhHHHhCCCEEEECCCccCCccceeEEecC
Confidence            65322 111 2468999999999999999999999999999999999999999999999997

>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>PRK10864 putative methyltransferase; Provisional Back     alignment and domain information
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3 Back     alignment and domain information
>KOG2506|consensus Back     alignment and domain information
>PRK10358 putative rRNA methylase; Provisional Back     alignment and domain information
>KOG0838|consensus Back     alignment and domain information
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2 Back     alignment and domain information
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional Back     alignment and domain information
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1 Back     alignment and domain information
>PRK10433 putative RNA methyltransferase; Provisional Back     alignment and domain information
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO) Back     alignment and domain information
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>KOG0839|consensus Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
2i6d_A 257 The Structure Of A Putative Rna Methyltransferase O 8e-10
1ipa_A 274 Crystal Structure Of Rna 2'-O Ribose Methyltransfer 9e-08
1x7p_A 287 Crystal Structure Of The Spou Methyltransferase Avi 2e-07
1x7o_A 287 Crystal Structure Of The Spou Methyltransferase Avi 7e-07
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 4   MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDILKELPLPED-----VPQHR 58
           ++ RK R ++    +EG +++ + L       +V       L+ +  P D     +P+  
Sbjct: 16  LRERKYRLREQAFAVEGPKLVGEXLPFYRCRXLV--GTAAXLRAVSTPHDAEVVELPES- 72
Query: 59  VDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCA 118
            D+K I   S   TP  +  +F+LPA P    +P    L ++ D ++DPGN+G+ILR   
Sbjct: 73  FDFKRI---STQTTPQPLXAVFDLPAEP----EPVVEGLTLLLDGVQDPGNVGTILRTAD 125
Query: 119 AVGARQVVCSRGCVDIYDNKVIRAA 143
             G R V    G  D++  KV++A+
Sbjct: 126 WFGIRHVWLGTGSADVFSPKVVQAS 150
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Back     alignment and structure
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet Length = 287 Back     alignment and structure
>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
1ipa_A 274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 6e-39
2i6d_A 257 RNA methyltransferase, TRMH family; stuctural geno 2e-37
1x7o_A 287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 6e-37
3nk6_A 277 23S rRNA methyltransferase; nosiheptide, nosihepti 3e-30
1v2x_A 194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 1e-07
2ha8_A 184 TAR (HIV-1) RNA loop binding protein; methyltransf 2e-07
1zjr_A 211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 3e-06
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 4e-06
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274 Back     alignment and structure
 Score =  131 bits (332), Expect = 6e-39
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 5   KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFS-------QWDILKELPLPEDVPQH 57
             RK R+ +   ++EG R +  AL+A ++L+            +  +   L     +   
Sbjct: 18  LERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALL 77

Query: 58  RVDYKNIQLWSDLVTPPGIIGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVC 117
            V    ++  S    P G+I +  +P   +    P+   L +V   +  PGN+G++LR  
Sbjct: 78  EVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSA 137

Query: 118 AAVGARQVVCSRGCVDIYDNKVIRAAA 144
            A GA  V+ + G VD+Y  +VIR + 
Sbjct: 138 DAAGAEAVLVA-GGVDLYSPQVIRNST 163
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Length = 257 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287 Back     alignment and structure
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277 Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211 Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
1ipa_A 274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 100.0
2i6d_A 257 RNA methyltransferase, TRMH family; stuctural geno 100.0
3nk6_A 277 23S rRNA methyltransferase; nosiheptide, nosihepti 100.0
1x7o_A 287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 100.0
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 100.0
3l8u_A 182 SMU.1707C, putative rRNA methylase; methyltransfer 99.71
3n4j_A 165 RNA methyltransferase; center for structural genom 99.69
3e5y_A 160 TRMH family RNA methyltransferase; ssgcid, protein 99.69
3kty_A 173 Probable methyltransferase; alpha-beta-alpha sandw 99.62
2ha8_A 184 TAR (HIV-1) RNA loop binding protein; methyltransf 99.59
1v2x_A 194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 99.57
1zjr_A 211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 99.48
3ilk_A 244 Uncharacterized tRNA/RRNA methyltransferase HI038; 99.46
3onp_A 249 TRNA/RRNA methyltransferase (SPOU); structural gen 99.45
3ic6_A 223 Putative methylase family protein; putative methyl 99.39
1w41_A101 50S ribosomal protein L30E; electrostatic interact 90.37
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 89.56
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 86.69
3o85_A122 Ribosomal protein L7AE; alpha beta sandwich fold, 85.27
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 85.21
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 84.62
2fc3_A124 50S ribosomal protein L7AE; alpha-beta-alpha sandw 84.23
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 83.82
3iz5_f112 60S ribosomal protein L30 (L30E); eukaryotic ribos 83.72
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 83.0
2jnb_A144 NHP2-like protein 1; splicing, KINK-turn RNA-bindi 82.57
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 82.28
2aif_A135 Ribosomal protein L7A; high-mobility like protein, 81.71
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 81.67
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 81.66
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
Probab=100.00  E-value=4.7e-38  Score=244.58  Aligned_cols=140  Identities=26%  Similarity=0.438  Sum_probs=119.3

Q ss_pred             cccchhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc------cccCCCCCC-CCEEEeCHHHHHhhcCCCCCCce
Q psy6779           4 MKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI------LKELPLPED-VPQHRVDYKNIQLWSDLVTPPGI   76 (144)
Q Consensus         4 L~~~k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~------~~~l~~~~~-~~~~~v~~~~l~~l~~~~~~qGv   76 (144)
                      |+++|+|++++.|++||.|+|+|||+++..++++|++++..      +.+.+...+ ++++.++++.|++++++.+||||
T Consensus        17 L~~kk~R~~~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv   96 (274)
T 1ipa_A           17 LLERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGL   96 (274)
T ss_dssp             GGSHHHHHHHTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCSE
T ss_pred             HhccccccccCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccchHHHHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeE
Confidence            78889999999999999999999999987899999987631      222344457 89999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCCCCeEEEEecCCCCCcHHHHHHHHhHhCCCEEEEcCCccCCCCcceeeccC
Q psy6779          77 IGIFELPAHPIASIDPASLPLNIVCDNIRDPGNMGSILRVCAAVGARQVVCSRGCVDIYDNKVIRAAA  144 (144)
Q Consensus        77 ~a~~~~~~~~~~~~~~~~~~~ilvLD~i~DP~NlGaIiRtA~a~Gv~~vil~~~~~d~~~pkviRaS~  144 (144)
                      +|+++.+..++.++.....+++++||+||||||+|||+|||+|||+++|+++++ +|+|||+++|+||
T Consensus        97 ~a~~~~~~~~l~~~~~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~  163 (274)
T 1ipa_A           97 IALARMPERTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNST  163 (274)
T ss_dssp             EEEEECCCCCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHhccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcC
Confidence            999998775544432233568999999999999999999999999999999999 9999999999997
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Back     alignment and structure
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0 Back     alignment and structure
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A* Back     alignment and structure
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0 Back     alignment and structure
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis} Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Back     alignment and structure
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae} Back     alignment and structure
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Back     alignment and structure
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia} Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1 Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1 Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 144
d1ipaa2105 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain 1e-13
d1mxia_ 156 c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransf 1e-08
d1gz0a1166 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Esch 1e-07
d1v2xa_ 191 c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH 7e-07
d1ipaa1158 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal doma 7e-07
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 105 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RrmA (RrmH), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 60.8 bits (147), Expect = 1e-13
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 5   KSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQ-------WDILKELPLPEDVPQH 57
             RK R+ +   ++EG R +  AL+A ++L+     +         +   L     +   
Sbjct: 18  LERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALL 77

Query: 58  RVDYKNIQLWSDLVTPPGIIGIFELP 83
            V    ++  S    P G+I +  +P
Sbjct: 78  EVSEAVLKKLSVRDNPAGLIALARMP 103
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 156 Back     information, alignment and structure
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191 Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 99.71
d1gz0a1166 RlmB, C-terminal domain {Escherichia coli [TaxId: 99.7
d1ipaa1158 RrmA (RrmH), C-terminal domain {Thermus thermophil 99.69
d1v2xa_ 191 tRNA (Gm18) methyltransferase TrmH {Thermus thermo 99.46
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 99.42
d1mxia_ 156 Hypothetical tRNA/rRNA methyltransfease HI0766 (Yi 99.36
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 92.66
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 91.18
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 91.13
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 89.01
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 88.62
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 87.28
d2aifa1115 Ribosomal protein L7ae {Cryptosporidium parvum [Ta 85.64
d1rlga_113 Ribosomal protein L7ae {Archaeon Archaeoglobus ful 83.93
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 83.64
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 83.47
d2fc3a1124 Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 5 83.18
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RrmA (RrmH), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.8e-17  Score=109.46  Aligned_cols=82  Identities=21%  Similarity=0.310  Sum_probs=68.4

Q ss_pred             ccccchhhhhcCCEEEEeHHHHHHHHHcCCceeEEEEecccc-------cccCCCCCCCCEEEeCHHHHHhhcCCCCCCc
Q psy6779           3 YMKSRKQREKKGWLMLEGKRILIDALKANLKLKMVFFSQWDI-------LKELPLPEDVPQHRVDYKNIQLWSDLVTPPG   75 (144)
Q Consensus         3 ~L~~~k~R~~~~~~~v~G~~~v~eal~~~~~i~~l~~~~~~~-------~~~l~~~~~~~~~~v~~~~l~~l~~~~~~qG   75 (144)
                      .|+++|+|+++|.|+|||.+.|.||+++|+.++.+|+++...       +.......+++++.+++++|++++++.+|||
T Consensus        16 ~L~~~k~R~~~g~flvEG~r~v~eal~~g~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~~~~~~ls~~~tpqG   95 (105)
T d1ipaa2          16 RLLERKHRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAG   95 (105)
T ss_dssp             GGGSHHHHHHHTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEEEECHHHHHHHCCSSSCCS
T ss_pred             HHhcccchhhhCeEEEEcHHHHHHHHHcCCCceEEEEehhhhccchHHHHHHHhhcCCCeEEEECHHHHHHHhCCCCCCc
Confidence            378999999999999999999999999999999999986531       1222344578999999999999999999999


Q ss_pred             eEEEEeCCC
Q psy6779          76 IIGIFELPA   84 (144)
Q Consensus        76 v~a~~~~~~   84 (144)
                      |+|++++|+
T Consensus        96 iiAv~~~p~  104 (105)
T d1ipaa2          96 LIALARMPE  104 (105)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEecCC
Confidence            999999875
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure