Psyllid ID: psy6822


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE
ccEEEEcccccccHHHHHHHHHccHHHHHccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHc
ccEEEEEcccccccHHHHHHHHcHHHHHHccccEEEccccccccEEEEEEEcccccEEccEEEEEEEEEEccEEEEccccHHcHHHHHHHHccccHHHHHHHccccc
mqylaavnkspsnlitEQILEAspllesfgnaktvrndnssrFGKFLQVHFKELNteeeekeegkeKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEEKKEEEEKE
MQYLAAVnkspsnliTEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQqekkeeeekkeeeeke
MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTeeeekeegkekeeeeqkqqqqqqqekeeqqekeeqqekkeeeekkeeeeke
********************************************KFLQV**********************************************************
MQYLAA*NK*****ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQK*****QQEKEEQQEKE******************
********KSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKEL*****************************************************
MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKEEGKEKEEEEQKQQQQQQQEKEEQQEKEEQQEKKEEEE**E*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query107 2.2.26 [Sep-21-2011]
Q17LW0 2163 Myosin-VIIa OS=Aedes aegy N/A N/A 0.467 0.023 0.666 1e-14
Q29P71 2168 Myosin-VIIa OS=Drosophila no N/A 0.579 0.028 0.571 2e-14
Q9V3Z6 2167 Myosin-VIIa OS=Drosophila no N/A 0.579 0.028 0.571 2e-14
P97479 2215 Unconventional myosin-VII yes N/A 0.915 0.044 0.415 5e-14
Q13402 2215 Unconventional myosin-VII no N/A 0.579 0.027 0.539 6e-14
Q28970 566 Unconventional myosin-VII no N/A 0.467 0.088 0.607 8e-14
Q622K8 2099 Unconventional myosin hea N/A N/A 0.579 0.029 0.555 1e-13
P91443 2098 Unconventional myosin hea yes N/A 0.579 0.029 0.555 1e-13
P02565 1940 Myosin-3 OS=Gallus gallus no N/A 0.476 0.026 0.507 2e-13
Q8MJV1 1937 Myosin-2 OS=Equus caballu no N/A 0.476 0.026 0.508 2e-13
>sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 1   MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
           +QYLAA++   S  I +QILEA+P+LE+FGNAKTVRNDNSSRFGK++ +HF
Sbjct: 165 LQYLAAISGKHS-WIEQQILEANPILEAFGNAKTVRNDNSSRFGKYIDIHF 214




Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.
Aedes aegypti (taxid: 7159)
>sp|Q29P71|MYO7A_DROPS Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura GN=ck PE=3 SV=1 Back     alignment and function description
>sp|Q9V3Z6|MYO7A_DROME Myosin-VIIa OS=Drosophila melanogaster GN=ck PE=1 SV=1 Back     alignment and function description
>sp|P97479|MYO7A_MOUSE Unconventional myosin-VIIa OS=Mus musculus GN=Myo7a PE=1 SV=2 Back     alignment and function description
>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2 Back     alignment and function description
>sp|Q28970|MYO7A_PIG Unconventional myosin-VIIa (Fragment) OS=Sus scrofa GN=MYO7A PE=2 SV=1 Back     alignment and function description
>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae GN=hum-6 PE=3 SV=1 Back     alignment and function description
>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans GN=hum-6 PE=1 SV=1 Back     alignment and function description
>sp|P02565|MYH3_CHICK Myosin-3 OS=Gallus gallus GN=MYH3 PE=2 SV=3 Back     alignment and function description
>sp|Q8MJV1|MYH2_HORSE Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
328712707 2918 PREDICTED: myosin-XV isoform 1 [Acyrthos 0.495 0.018 0.962 5e-24
328712705 2782 PREDICTED: myosin-XV isoform 2 [Acyrthos 0.495 0.019 0.962 5e-24
242017795 2941 myosin XV, putative [Pediculus humanus c 0.476 0.017 0.941 7e-23
322784026 2964 hypothetical protein SINV_11150 [Solenop 0.495 0.017 0.811 3e-21
307208120 4137 Myosin-XV [Harpegnathos saltator] 0.495 0.012 0.811 3e-21
307171858 3189 Myosin-XV [Camponotus floridanus] 0.495 0.016 0.811 3e-21
332018715 2920 Myosin-XV [Acromyrmex echinatior] 0.495 0.018 0.811 5e-21
307201803108 Myosin-VIIa [Harpegnathos saltator] 0.495 0.490 0.830 7e-21
350416998 3668 PREDICTED: LOW QUALITY PROTEIN: myosin-X 0.495 0.014 0.792 2e-20
345482651 3625 PREDICTED: LOW QUALITY PROTEIN: hypothet 0.495 0.014 0.811 2e-20
>gi|328712707|ref|XP_001944282.2| PREDICTED: myosin-XV isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 53/53 (100%)

Query: 1   MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
           MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFL+VHFK+
Sbjct: 321 MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLEVHFKQ 373




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712705|ref|XP_003244885.1| PREDICTED: myosin-XV isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242017795|ref|XP_002429372.1| myosin XV, putative [Pediculus humanus corporis] gi|212514281|gb|EEB16634.1| myosin XV, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|322784026|gb|EFZ11166.1| hypothetical protein SINV_11150 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307208120|gb|EFN85624.1| Myosin-XV [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307171858|gb|EFN63513.1| Myosin-XV [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332018715|gb|EGI59287.1| Myosin-XV [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307201803|gb|EFN81476.1| Myosin-VIIa [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350416998|ref|XP_003491207.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XV-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345482651|ref|XP_001608000.2| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC100124138 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
FB|FBgn0263705 3145 Myo10A "Myosin 10A" [Drosophil 0.485 0.016 0.727 4.7e-13
UNIPROTKB|Q28970 566 MYO7A "Unconventional myosin-V 0.485 0.091 0.584 4.4e-12
UNIPROTKB|Q17LW0 2163 ck "Myosin-VIIa" [Aedes aegypt 0.467 0.023 0.666 7.5e-12
TAIR|locus:2036655170 AT1G42680 [Arabidopsis thalian 0.476 0.3 0.584 8.2e-12
FB|FBgn0000317 2167 ck "crinkled" [Drosophila mela 0.467 0.023 0.647 9.5e-12
UNIPROTKB|Q29P71 2168 ck "Myosin-VIIa" [Drosophila p 0.467 0.023 0.647 9.5e-12
UNIPROTKB|B9A012 1178 MYO7A "Myosin VIIA, isoform CR 0.485 0.044 0.584 1.2e-11
ZFIN|ZDB-GENE-080425-2 4115 myo15aa "myosin XVAa" [Danio r 0.476 0.012 0.641 1.9e-11
ZFIN|ZDB-GENE-100921-21 2220 si:ch73-194h10.2 "si:ch73-194h 0.485 0.023 0.603 2e-11
UNIPROTKB|E2RPH4 1829 MYO7A "Uncharacterized protein 0.485 0.028 0.584 2.1e-11
FB|FBgn0263705 Myo10A "Myosin 10A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 190 (71.9 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 40/55 (72%), Positives = 47/55 (85%)

Query:     1 MQYLAAV---NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 52
             MQYLAAV     S S +ITEQILEA+PLLE+FGNA+T RNDNSSRFGK+L+V+FK
Sbjct:   260 MQYLAAVVPGGGSASAVITEQILEAAPLLEAFGNARTARNDNSSRFGKYLEVYFK 314




GO:0016461 "unconventional myosin complex" evidence=ISS;NAS
GO:0016459 "myosin complex" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0030175 "filopodium" evidence=IDA
GO:0043025 "neuronal cell body" evidence=IDA
GO:0046847 "filopodium assembly" evidence=IMP
GO:0007391 "dorsal closure" evidence=IMP
GO:0006886 "intracellular protein transport" evidence=IMP
UNIPROTKB|Q28970 MYO7A "Unconventional myosin-VIIa" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q17LW0 ck "Myosin-VIIa" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
TAIR|locus:2036655 AT1G42680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0000317 ck "crinkled" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q29P71 ck "Myosin-VIIa" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|B9A012 MYO7A "Myosin VIIA, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080425-2 myo15aa "myosin XVAa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100921-21 si:ch73-194h10.2 "si:ch73-194h10.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPH4 MYO7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P91443HUM6_CAEELNo assigned EC number0.55550.57940.0295yesN/A
P08964MYO1_YEASTNo assigned EC number0.52300.49530.0274yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
smart00242 677 smart00242, MYSc, Myosin 1e-20
cd00124 679 cd00124, MYSc, Myosin motor domain 3e-20
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 3e-20
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-18
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 4e-18
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 5e-18
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 7e-17
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 4e-16
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 7e-16
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 3e-15
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 7e-14
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-13
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 2e-11
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 7e-10
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 1e-09
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 2e-07
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 4e-06
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 1e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 6e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 7e-04
PRK00448 1437 PRK00448, polC, DNA polymerase III PolC; Validated 8e-04
pfam05758 832 pfam05758, Ycf1, Ycf1 9e-04
PRK04019330 PRK04019, rplP0, acidic ribosomal protein P0; Vali 0.001
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.002
PTZ00399651 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro 0.002
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.003
pfam14181155 pfam14181, YqfQ, YqfQ-like protein 0.003
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.004
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
 Score = 84.9 bits (211), Expect = 1e-20
 Identities = 32/55 (58%), Positives = 46/55 (83%), Gaps = 2/55 (3%)

Query: 1   MQYLAAVNKSPS--NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53
           MQYLA+V+ S +    + +QILE++P+LE+FGNAKT+RN+NSSRFGKF+++HF  
Sbjct: 113 MQYLASVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDA 167


Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated Back     alignment and domain information
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1 Back     alignment and domain information
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 107
PTZ00014 821 myosin-A; Provisional 99.77
COG5022 1463 Myosin heavy chain [Cytoskeleton] 99.77
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 99.75
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 99.75
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 99.75
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 99.74
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 99.74
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 99.72
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 99.72
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 99.72
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 99.71
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 99.7
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 99.7
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 99.7
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 99.69
KOG0163|consensus 1259 99.66
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 99.63
KOG0161|consensus 1930 99.63
KOG0164|consensus 1001 99.61
KOG0162|consensus 1106 99.59
KOG0160|consensus 862 99.5
KOG4229|consensus 1062 99.16
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 92.0
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
Probab=99.77  E-value=7.5e-20  Score=163.21  Aligned_cols=62  Identities=42%  Similarity=0.654  Sum_probs=55.5

Q ss_pred             CceeeeecCCCC-chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822           1 MQYLAAVNKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE   62 (107)
Q Consensus         1 LqYLA~va~s~~-~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~   62 (107)
                      |+|||.+++... ..++.+|+++||||||||||+|++||||||||||++|+|+.+|.|.|++-
T Consensus       204 m~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I  266 (821)
T PTZ00014        204 MRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSI  266 (821)
T ss_pred             HHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEE
Confidence            689998765433 46899999999999999999999999999999999999999999999863



>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 4e-12
2x51_A 789 M6 Delta Insert1 Length = 789 4e-12
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 4e-12
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 4e-12
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 4e-12
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 4e-12
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 4e-12
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 4e-12
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 4e-12
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 5e-12
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 5e-12
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 5e-12
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 5e-12
4db1_A 783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 5e-12
2x9h_A 695 Crystal Structure Of Myosin-2 Motor Domain In Compl 7e-12
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 7e-12
3mkd_A 692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 7e-12
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 7e-12
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 7e-12
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 8e-12
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 8e-12
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 8e-12
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 8e-12
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 8e-12
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 8e-12
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 8e-12
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 8e-12
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 8e-12
2y9e_X 758 Structural Basis For The Allosteric Interference Of 8e-12
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 8e-12
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 8e-12
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 8e-12
2y0r_X 758 Structural Basis For The Allosteric Interference Of 8e-12
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 8e-12
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 8e-12
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 8e-12
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 8e-12
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 1e-11
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 2e-11
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 3e-11
4a7f_C 697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 4e-11
1lkx_A 697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 4e-11
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 1e-10
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 1e-10
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-10
1w8j_A 766 Crystal Structure Of Myosin V Motor Domain - Nucleo 2e-10
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 2e-10
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 2e-10
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 2e-10
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 2e-10
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 2e-10
1b7t_A 835 Myosin Digested By Papain Length = 835 2e-10
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 2e-10
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 2e-10
1br2_A 791 Smooth Muscle Myosin Motor Domain Complexed With Mg 2e-10
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 2e-10
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 2e-10
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 2e-10
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 4e-10
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 8e-10
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure

Iteration: 1

Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 28/39 (71%), Positives = 37/39 (94%) Query: 15 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 53 I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E Sbjct: 178 IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query107
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 5e-25
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 5e-25
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 2e-24
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 8e-24
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 6e-23
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 2e-22
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 2e-20
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-20
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-18
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 3e-11
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
 Score = 96.9 bits (242), Expect = 5e-25
 Identities = 29/51 (56%), Positives = 42/51 (82%), Gaps = 1/51 (1%)

Query: 1   MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
           ++YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF
Sbjct: 161 LRYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHF 210


>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 99.77
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 99.77
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 99.77
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 99.77
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 99.77
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 99.76
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 99.76
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.76
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.76
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 99.76
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 99.75
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
Probab=99.77  E-value=2e-20  Score=164.69  Aligned_cols=62  Identities=44%  Similarity=0.702  Sum_probs=56.7

Q ss_pred             CceeeeecCCCC-chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhhh
Q psy6822           1 MQYLAAVNKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEKE   62 (107)
Q Consensus         1 LqYLA~va~s~~-~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k~   62 (107)
                      |+|||+++++.. ..+.++|+++||||||||||+|++||||||||||++|+|+.+|.|.|++-
T Consensus       177 ~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I  239 (795)
T 1w7j_A          177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANM  239 (795)
T ss_dssp             HHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEE
T ss_pred             HHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeec
Confidence            689999987653 46899999999999999999999999999999999999999999999863



>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 107
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-13
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 2e-12
d1lkxa_ 684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 3e-12
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 8e-12
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 9e-12
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 2e-11
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
 Score = 62.5 bits (151), Expect = 2e-13
 Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 1/52 (1%)

Query: 1   MQYLAAV-NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 51
           M+Y A V   +    + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 115 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 166


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query107
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.69
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.69
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 99.68
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 99.66
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.66
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.66
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=99.69  E-value=8.2e-19  Score=151.23  Aligned_cols=61  Identities=44%  Similarity=0.750  Sum_probs=54.0

Q ss_pred             CceeeeecCCCC-----------chHHHHHhhcCchhhhhcCccccCCCCCCcccceEEEEecCCCcchhhh
Q psy6822           1 MQYLAAVNKSPS-----------NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKELNTEEEEK   61 (107)
Q Consensus         1 LqYLA~va~s~~-----------~~leekIl~snpILEAFGNAKT~~NdNSSRFGKfieLqFd~~G~~~~~k   61 (107)
                      |+|||.+++...           ..++++|++++|||||||||+|++|+||||||||++|+|+.+|.|.|++
T Consensus       142 l~yL~~~~~~~~~~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~  213 (789)
T d1kk8a2         142 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGAD  213 (789)
T ss_dssp             HHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEE
T ss_pred             HHHHHHHhcccccccccccccccccHHHHHHHHhHHHHhccccCCCCCCccCCcceeEEEEECCCCCCccce
Confidence            578887764321           2488999999999999999999999999999999999999999999986



>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure