Psyllid ID: psy682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM
Secondary Structure (PSIPRED)
ccccccccEEEEEEccHHHHHccccccccccHHcccccccccccccccccccEEEEEEEcccccEEEEcccccccccccEEEEEEcccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEcccccccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEccccccccccccccccHHHHHHccccEEEEEEEccccEEEcHHHHHHHccccccccccccccccccHHHHHccccccccccccccccccEEcccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccHHHHHHcHHHHHHHHHccccccccccccHcccccccEEEEEEccccccEEEEEccccccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccEEEccEEEEccccccccccccccccccccccEEcccEEEEEccccEEEEEccccccEEEEEccccEEEEEEEccEEEEEEccccEEEEccccccEEEEEEEEcccccccccccccccccEEEEEccccEEEEEEEEcEEEEccccccEEEEEccccHHHHcccccccccHHEEccccEEEEEEccccEEcccEcccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MSGGDKGIVEVWRTFNLALLYafpscdssvRSLAlshdqkyspmmfSTVLDDVCmslkfpsnspichvtantyvTLHMPSVVTVTANHQfainrwnpdyaasiqspsyaetpgsppgnlpltldpilthptsnnnapvpkrhlgdnfsqklrvrhncfvttVDSRFLLACgfwdnsfrepFTTMYLALQegkfdhpnrlfSSISLAWKNcqrdtsdvkvhTTFGDllrsldppsgfaspesvvmSREGVIVVNYERGHIAAFTmngnrlrheshndnlqelipelfflpemlvnsngyclgktednvninnvelppwasspeqFVRINRM
Flexible Loop (DISEMBL)
MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINnvelppwasspeqfvrinrm
Low Complexity Region (SEG)
MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM
Disordered region (IsUnstruct)
******GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA********************************************NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRS************VVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPW*************
Disordered Region (DISOPRED)
****DKGIVEVWRTFNLALLYAFPSCDSS*********QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD*******************NLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM
Disordered Region (DISEMBL)
MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS**********PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM
Disordered Region (DISPRO)
****DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLR*LDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9W4E2	3578	Neurobeachin OS=Drosophil	yes	N/A	0.754	0.069	0.453	4e-54
Q9ESE1	2856	Lipopolysaccharide-respon	yes	N/A	0.733	0.084	0.327	1e-26
Q9EPN1	2936	Neurobeachin OS=Mus muscu	no	N/A	0.742	0.083	0.341	1e-26
Q8NFP9	2946	Neurobeachin OS=Homo sapi	yes	N/A	0.742	0.083	0.341	2e-26
P50851	2863	Lipopolysaccharide-respon	no	N/A	0.733	0.084	0.323	2e-26
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.721	0.094	0.333	9e-26
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.721	0.094	0.329	3e-24
Q54U63	2491	BEACH domain-containing p	yes	N/A	0.081	0.010	0.490	2e-09
Q55AV3	2967	BEACH domain-containing p	no	N/A	0.290	0.032	0.307	5e-09
E7FAW3	2801	Neurobeachin-like protein	no	N/A	0.178	0.021	0.524	4e-08

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/269 (45%), Positives = 164/269 (60%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3201 SPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3260

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+    +RHLGDNFSQ L++R NCFVT
Sbjct: 3261 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVT 3320

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3321 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3375

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3376 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGP 3435

Query: 268  RLRHESHNDNLQELI-PELFFLPEMLVNS 295
             L H +  D L+ L  P  F  PE++  S
Sbjct: 3436 VLIHTTFGDLLRSLDPPAEFHSPELITMS 3464

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 39/281 (13%)

Query: 40   KYSPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN-- 96
            + SP+MF+     DV M LKFPSNSP+ HV ANT   L MP+V+TVTAN  FA+N+W+  
Sbjct: 2487 QASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNL 2546

Query: 97   PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN 156
            P +  ++Q   Y          LP+ +DP++   T  +     +R + D   Q ++V   
Sbjct: 2547 PAHQGAVQDQPY---------QLPVEIDPLIACGTGTH-----RRQVTDLLDQSIQVHSQ 2592

Query: 157  CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC---- 210
            CFV T D+R++L CGFWD SFR   T     +Q   G +D    L  S S    NC    
Sbjct: 2593 CFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILS 2652

Query: 211  -QRDTSDVKVH-----TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAA 261
              RD + +  +     +  GD     +P    A+P +++   +  I    V  E G + +
Sbjct: 2653 GSRDATLLLWYWNGKSSGIGD-----NPGGETATPRAILTGHDYEITCAAVCAELGLVLS 2707

Query: 262  FTMNGNRLRHESHNDNLQELI-PELFFLPEMLVNS-NGYCL 300
             +  G  L H  + D L+ L  PE    P+++  S  G+C+
Sbjct: 2708 GSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2748

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Mus musculus (taxid: 10090)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 33/278 (11%)

Query: 42   SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
            SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+ +  
Sbjct: 2565 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2623

Query: 101  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct: 2624 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2675

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQE---GKFDHPNRLFSSISLAWKNC-----QR 212
            T D+R++L CGFWD SFR  ++T    L +   G +D    L  S S    +C      R
Sbjct: 2676 TADNRYILICGFWDKSFR-VYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSR 2734

Query: 213  DTSDV-----KVHTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTM 264
            D + +       H   GD   S D P    +P +V+   +  +V   V  E G + +   
Sbjct: 2735 DATLLLWYWSGRHHIIGDNPNSSDYP----APRAVLTGHDHEVVCVSVCAELGLVISGAK 2790

Query: 265  NGNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct: 2791 EGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2828

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 33/278 (11%)

Query: 42   SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
            SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+ +  
Sbjct: 2575 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2633

Query: 101  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct: 2634 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2685

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQE---GKFDHPNRLFSSISLAWKNC-----QR 212
            T D+R++L CGFWD SFR  ++T    L +   G +D    L  S S    +C      R
Sbjct: 2686 TADNRYILICGFWDKSFR-VYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSR 2744

Query: 213  DTSDV-----KVHTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTM 264
            D + +       H   GD   S D P    +P +V+   +  +V   V  E G + +   
Sbjct: 2745 DATLLLWYWSGRHHIIGDNPNSSDYP----APRAVLTGHDHEVVCVSVCAELGLVISGAK 2800

Query: 265  NGNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct: 2801 EGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2838

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 39/281 (13%)

Query: 40   KYSPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN-- 96
            + SP+MF+     DV M LKFPSNSP+ HV ANT   L  P+V+TVTAN  FA+N+W+  
Sbjct: 2494 QVSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNL 2553

Query: 97   PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN 156
            P +  ++Q   Y          LP+ +DP++      +N  + +R + D   Q ++V   
Sbjct: 2554 PAHQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQVHSQ 2599

Query: 157  CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC---- 210
            CFV T D+R++L CGFWD SFR   T     +Q   G +D    L  S S    NC    
Sbjct: 2600 CFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILS 2659

Query: 211  -QRDTSDVKVH-----TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAA 261
              RD + +  +     +  GD     +P S  A+P +++   +  +    V  E G + +
Sbjct: 2660 GSRDATLLLWYWNGKCSGIGD-----NPGSETAAPRAILTGHDYEVTCAAVCAELGLVLS 2714

Query: 262  FTMNGNRLRHESHNDNLQELI-PELFFLPEMLVNS-NGYCL 300
             +  G  L H  + D L+ L  PE    P+++  S  G+C+
Sbjct: 2715 GSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2755

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 131/255 (51%), Gaps = 17/255 (6%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA- 100
            +P MF    DD+CM +K+ SNSP+ ++ ANT+  L  P+VV V  N  F++N+W+  Y+ 
Sbjct: 2137 APTMFRRHDDDLCMMMKYISNSPVVYLAANTFHQLPHPTVVGVAQNLVFSLNKWDNSYSY 2196

Query: 101  ASIQSPSYAETPGSPPGN--LPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
             S Q  + +  P +  G   LPLT DP L   T+ +  P+ +RHLGD F Q+L+V+ + F
Sbjct: 2197 GSTQRSALSMDPSNVEGQVALPLTADPQLA--TAASTTPIARRHLGDAFDQRLQVQCSNF 2254

Query: 159  VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC-----Q 211
            VTT DS+++ ACG+ D SFR   T      Q   G  D    +  S +  + +C      
Sbjct: 2255 VTTTDSKYIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGS 2314

Query: 212  RDTSDVKVH--TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNG 266
             D + V  H   T G +    + P    SP S++   E  I    V+ E G + +   +G
Sbjct: 2315 MDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDG 2374

Query: 267  NRLRHESHNDNLQEL 281
              L H + +D L+ +
Sbjct: 2375 VILIHTTASDLLRRI 2389

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 128/255 (50%), Gaps = 17/255 (6%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA- 100
            +P MF    +D+CM +K+ SNSP+ ++ ANT+  L  P+VV V  N  F++N+W+  Y+ 
Sbjct: 2113 APTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLVFSLNKWDNSYSY 2172

Query: 101  ASIQSPSYAETPGSPPG--NLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
             + Q  + +  P +  G  +LPLT D  L    S    PV +RHLGD F Q+L V+ + F
Sbjct: 2173 GASQRSALSMDPSNAEGQVSLPLTADAQLASAASTT--PVARRHLGDAFDQRLTVQCSNF 2230

Query: 159  VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC-----Q 211
            VTT DS+F+ ACG+ D SFR   T      Q   G  D    +  S +  + +C      
Sbjct: 2231 VTTTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFSDCYVVTGS 2290

Query: 212  RDTSDVKVH--TTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNG 266
             D + V  H   T G +    + P    SP S++   E  I    V+ E G + +   +G
Sbjct: 2291 MDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEHGLVVSGCEDG 2350

Query: 267  NRLRHESHNDNLQEL 281
              L H + +D L+ +
Sbjct: 2351 VILIHTTSSDLLRRI 2365

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 277  NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
            +++ELIPE +++PE L N N    G  ++ + I +V LPPWASSP  F+RINR
Sbjct: 1984 DVKELIPEFYYMPEFLTNHNHINFGIKQNGIGIEDVLLPPWASSPSDFIRINR 2036

Dictyostelium discoideum (taxid: 44689)

>sp|Q55AV3|LVSD_DICDI BEACH domain-containing protein lvsD OS=Dictyostelium discoideum GN=lvsD PE=4 SV=2

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 64/166 (38%), Gaps = 70/166 (42%)

Query: 166  FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGD 225
            FL+ C        EPFT+ ++ LQ G FDH +R+F SI   W+NC   +SDVK  T    
Sbjct: 2315 FLMRC--------EPFTSHFIKLQSGHFDHADRMFDSIIDCWRNCLNSSSDVKELT---- 2362

Query: 226  LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPEL 285
                   P  F  PE                     F +N NR+                
Sbjct: 2363 -------PEFFYLPE---------------------FLINRNRV---------------- 2378

Query: 286  FFLPEMLVNSNGYCLGKTEDNVNINNVELPPWA-SSPEQFVRINRM 330
                E  V  NG  L         +NV LPPWA  SP  F+ +NRM
Sbjct: 2379 ----EFGVKQNGKAL---------DNVSLPPWAQQSPYHFIMLNRM 2411

Dictyostelium discoideum (taxid: 44689)

>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 270  RHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTE-DNVNINNVELPPWASSPEQFVRIN 328
            R ES  D ++ELIPE F+ PE L N NG+ LG  +     +NNV LPPWASS E F+R +
Sbjct: 2251 RMESPAD-VKELIPEFFYFPEFLENMNGFDLGCLQISQEKVNNVLLPPWASSREDFIRKH 2309

Query: 329  R 329
            R
Sbjct: 2310 R 2310

Involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
312384812	2590	hypothetical protein AND_01512 [Anophele	0.660	0.084	0.525	5e-60
345481241	3146	PREDICTED: neurobeachin-like [Nasonia vi	0.460	0.048	0.655	6e-54
195129838	3747	GI15273 [Drosophila mojavensis] gi|19390	0.754	0.066	0.464	6e-54
195425835	3583	GK10290 [Drosophila willistoni] gi|19415	0.754	0.069	0.460	3e-53
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.751	0.083	0.447	4e-53
195396793	3654	GJ16846 [Drosophila virilis] gi|19414678	0.754	0.068	0.460	5e-53
195046432	3712	GH24603 [Drosophila grimshawi] gi|193892	0.754	0.067	0.453	1e-52
194763773	3624	GF21330 [Drosophila ananassae] gi|190618	0.754	0.068	0.457	1e-52
332025325	732	Neurobeachin [Acromyrmex echinatior]	0.754	0.340	0.444	2e-52
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.460	0.047	0.636	2e-52

>gi|312384812|gb|EFR29447.1| hypothetical protein AND_01512 [Anopheles darlingi]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 163/240 (67%), Gaps = 22/240 (9%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMF+T+ DDVCMSLKF  NSPI H++ANTY  L MPSVVTVTA HQFA+NRWN  Y A
Sbjct: 2320 SPMMFNTMPDDVCMSLKFHLNSPIIHISANTYPQLPMPSVVTVTAGHQFAVNRWNCQYTA 2379

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA--PVPKRHLGDNFSQKLRVRHNCFV 159
            SIQSPSYAE+  +   NLPLT+DP+L+    +N++     +RHLGDNFSQKL+++ NC+V
Sbjct: 2380 SIQSPSYAESAQNMNANLPLTMDPLLSQINGHNSSSNQQNRRHLGDNFSQKLQIKSNCYV 2439

Query: 160  TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKV 219
            TT+ +      G          T++ ++ + G       L  S S+        +  V V
Sbjct: 2440 TTIPTPRATLTG-----HETAVTSVVISAELG-------LVVSGSI--------SGPVLV 2479

Query: 220  HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQ 279
            HTTFGDLLRSL+ P GF SPE++ +SREG IVVNY+ G +AA+T+NG  LR+E+HNDN Q
Sbjct: 2480 HTTFGDLLRSLEAPKGFISPENITLSREGFIVVNYDEGSVAAYTINGKLLRYETHNDNFQ 2539

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481241|ref|XP_001602669.2| PREDICTED: neurobeachin-like [Nasonia vitripennis]

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/154 (65%), Positives = 125/154 (81%), Gaps = 2/154 (1%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS++ DDVCM+LKFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YAA
Sbjct: 2771 SPMMFSSIPDDVCMTLKFPSNSPICHISANTYPQLPLPSVVTVTVGQQFAVNRWNTNYAA 2830

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT 161
            S+QSPSYA+TP +   N PL++DPIL+  T+N++ P  +RHLGDNFSQKL++R NCFVTT
Sbjct: 2831 SVQSPSYADTPQAQAANQPLSMDPILSQ-TANSSNPALRRHLGDNFSQKLKIRSNCFVTT 2889

Query: 162  VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH 195
            VDSRFL+ACGFWDNSFR  F+T    + +  F H
Sbjct: 2890 VDSRFLVACGFWDNSFR-VFSTETAKIVQIVFGH 2922

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129838|ref|XP_002009361.1| GI15273 [Drosophila mojavensis] gi|193907811|gb|EDW06678.1| GI15273 [Drosophila mojavensis]

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/269 (46%), Positives = 167/269 (62%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSPI H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3370 SPMMFSAMPEDLCQMLKFYQNSPIIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3429

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+LT H T+NN+  V +RHLGDNFSQ L++R NCFVT
Sbjct: 3430 SVQSPSYAESPQSPGSNQPLTIDPVLTVHGTNNNSHAVSRRHLGDNFSQMLKIRSNCFVT 3489

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3490 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3544

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3545 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSTNGP 3604

Query: 268  RLRHESHNDNLQELIPEL-FFLPEMLVNS 295
             L H +  D L+ L P + F  PE++  S
Sbjct: 3605 VLIHTTFGDLLRSLDPPVDFHSPELITMS 3633

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425835|ref|XP_002061170.1| GK10290 [Drosophila willistoni] gi|194157255|gb|EDW72156.1| GK10290 [Drosophila willistoni]

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 165/269 (61%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSPI H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3206 SPMMFSAMPEDLCQMLKFYQNSPIIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3265

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+  V +RHLGDNFSQ L++R NCFVT
Sbjct: 3266 SVQSPSYAESPQSPGSNQPLTIDPVLAGHGTNNNSNAVSRRHLGDNFSQMLKIRSNCFVT 3325

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3326 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3380

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3381 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSTNGP 3440

Query: 268  RLRHESHNDNLQELI-PELFFLPEMLVNS 295
             L H +  D L+ L  P  F  PE++  S
Sbjct: 3441 VLIHTTFGDLLRSLDPPAEFHSPELITMS 3469

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/268 (44%), Positives = 169/268 (63%), Gaps = 20/268 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS++ DD+CM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YAA
Sbjct: 2608 SPMMFSSIPDDICMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYAA 2667

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT 161
            S+QSPSYA+TP +   N PL++DP+L+   +++N P  +RHLGDNFSQKL++R NCFVTT
Sbjct: 2668 SVQSPSYADTPQAQAANQPLSMDPVLSQAANSSN-PTLRRHLGDNFSQKLKIRSNCFVTT 2726

Query: 162  VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHT 221
            VDSRFL+ACGFWDNSFR  F+T    + +  F H    +  ++   ++    TSD  + +
Sbjct: 2727 VDSRFLVACGFWDNSFR-VFSTETAKIVQIVFGH----YGVVTCLSRSECNITSDCYIAS 2781

Query: 222  TFGD---LL-------RSLDPPSGFASPESVVMSREG---VIVVNYERGHIAAFTMNGNR 268
               D   LL       +++       +P + +   E     +V++ E G + + +  G  
Sbjct: 2782 GSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELGLVVSGSYYGPV 2841

Query: 269  LRHESHNDNLQEL-IPELFFLPEMLVNS 295
            L H +  D L+ L  P  F LPE +  S
Sbjct: 2842 LVHTTFGDLLRSLEAPNGFSLPENIAMS 2869

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396793|ref|XP_002057013.1| GJ16846 [Drosophila virilis] gi|194146780|gb|EDW62499.1| GJ16846 [Drosophila virilis]

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 165/269 (61%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSPI H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3277 SPMMFSAMPEDLCQMLKFYQNSPIIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3336

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+  V +RHLGDNFSQ L++R NCFVT
Sbjct: 3337 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAVSRRHLGDNFSQMLKIRSNCFVT 3396

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3397 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3451

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3452 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSTNGP 3511

Query: 268  RLRHESHNDNLQELIPELFF-LPEMLVNS 295
             L H +  D L+ L P   F  PE++  S
Sbjct: 3512 VLIHTTFGDLLRSLDPPADFNSPELITMS 3540

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195046432|ref|XP_001992152.1| GH24603 [Drosophila grimshawi] gi|193892993|gb|EDV91859.1| GH24603 [Drosophila grimshawi]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/269 (45%), Positives = 165/269 (61%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3335 SPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3394

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+    +RHLGDNFSQ L++R NCFVT
Sbjct: 3395 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVT 3454

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3455 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3509

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3510 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSTNGP 3569

Query: 268  RLRHESHNDNLQELIPEL-FFLPEMLVNS 295
             L H +  D L+ L P + F  PE++  S
Sbjct: 3570 VLIHTTFGDLLRSLDPPVDFHSPELITMS 3598

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763773|ref|XP_001964007.1| GF21330 [Drosophila ananassae] gi|190618932|gb|EDV34456.1| GF21330 [Drosophila ananassae]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 20/269 (7%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct: 3247 SPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3306

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
            S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+  V +RHLGDNFSQ L++R NCFVT
Sbjct: 3307 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAVSRRHLGDNFSQMLKIRSNCFVT 3366

Query: 161  TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH 220
            TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++   ++    TSD  + 
Sbjct: 3367 TVDSRFLIACGFWDNSFR-VFATETAKIVQIVFGH----FGVVTCMARSECNITSDCYIA 3421

Query: 221  TTFGD---LL-------RSLDPPSGFASPESVVMSREGV---IVVNYERGHIAAFTMNGN 267
            +   D   LL       +S+       +P + +   E     +V++ E G + + + NG 
Sbjct: 3422 SGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNGP 3481

Query: 268  RLRHESHNDNLQELIPEL-FFLPEMLVNS 295
             L H +  D L+ L P   F  PE++  S
Sbjct: 3482 VLIHTTFGDLLRSLDPPAEFHSPELITMS 3510

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025325|gb|EGI65493.1| Neurobeachin [Acromyrmex echinatior]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 168/268 (62%), Gaps = 19/268 (7%)

Query: 42  SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
           SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YAA
Sbjct: 356 SPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYAA 415

Query: 102 SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT 161
           S+QSPSYA+TP +   N PL++DP+L+   +++N  + +RHLGDNFSQKL++R NCFVTT
Sbjct: 416 SVQSPSYADTPQAQAANQPLSMDPVLSQAANSSNPTLQRRHLGDNFSQKLKIRSNCFVTT 475

Query: 162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHT 221
           VDSRFL+ACGFWDNSFR  F+T    + +  F H    +  ++   ++    TSD  + +
Sbjct: 476 VDSRFLVACGFWDNSFR-VFSTETAKIVQIVFGH----YGVVTCLSRSECNITSDCYIAS 530

Query: 222 TFGD---LL-------RSLDPPSGFASPESVVMSREG---VIVVNYERGHIAAFTMNGNR 268
              D   LL       +++       +P + +   E     +V++ E G + + +  G  
Sbjct: 531 GSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELGLVVSGSHYGPV 590

Query: 269 LRHESHNDNLQEL-IPELFFLPEMLVNS 295
           L H +  D L+ L  P  F  PE +  S
Sbjct: 591 LVHTTFGDLLRSLEAPNGFSSPENIAMS 618

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 42   SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
            SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YAA
Sbjct: 2829 SPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYAA 2888

Query: 102  SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT 161
            S+QSPSYA+TP +   N PL++DP+L+   ++ N P  +RHLGDNFSQKL++R NCFVTT
Sbjct: 2889 SVQSPSYADTPQAQAANQPLSMDPVLSQAANSPN-PTLRRHLGDNFSQKLKIRSNCFVTT 2947

Query: 162  VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH 195
            VDSRFL+ACGFWDNSFR  F+T    + +  F H
Sbjct: 2948 VDSRFLVACGFWDNSFR-VFSTETAKIVQIVFGH 2980

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
FB|FBgn0086911	3578	rg "rugose" [Drosophila melano	0.751	0.069	0.459	4.2e-51
UNIPROTKB|B7Z2H9	739	NBEA "Uncharacterized protein"	0.745	0.332	0.346	7.8e-27
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.745	0.087	0.346	5.8e-26
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.745	0.083	0.346	6.2e-26
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.745	0.083	0.346	6.2e-26
MGI|MGI:1933162	2856	Lrba "LPS-responsive beige-lik	0.742	0.085	0.335	1.6e-25
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.742	0.085	0.328	6.9e-25
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.730	0.084	0.329	1.4e-24
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.748	0.086	0.342	1.4e-24
RGD|1311428	2709	Lrba "LPS-responsive vesicle t	0.748	0.091	0.330	1.7e-24

FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)]

 Score = 549 (198.3 bits), Expect = 4.2e-51, P = 4.2e-51
 Identities = 124/270 (45%), Positives = 165/270 (61%)

Query:    42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA 101
             SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y A
Sbjct:  3201 SPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYTA 3260

Query:   102 SIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
             S+QSPSYAE+P SP  N PLT+DP+L  H T+NN+    +RHLGDNFSQ L++R NCFVT
Sbjct:  3261 SVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFVT 3320

Query:   161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSIS-LAWKNCQRDTSDVKV 219
             TVDSRFL+ACGFWDNSFR  F T    + +  F H    F  ++ +A   C   TSD  +
Sbjct:  3321 TVDSRFLIACGFWDNSFRV-FATETAKIVQIVFGH----FGVVTCMARSECNI-TSDCYI 3374

Query:   220 HTTFGD---LL-------RSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNG 266
              +   D   LL       +S+       +P + +   E  +   V++ E G + + + NG
Sbjct:  3375 ASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAELGLVVSGSSNG 3434

Query:   267 NRLRHESHNDNLQELIPEL-FFLPEMLVNS 295
               L H +  D L+ L P   F  PE++  S
Sbjct:  3435 PVLIHTTFGDLLRSLDPPAEFHSPELITMS 3464

GO:0016021 "integral to membrane" evidence=IDA

GO:0008104 "protein localization" evidence=NAS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051018 "protein kinase A binding" evidence=NAS;IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

UNIPROTKB|B7Z2H9 NBEA "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 96/277 (34%), Positives = 138/277 (49%)

Query:    42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:   368 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVG 427

Query:   101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                 +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct:   428 LR-GAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 478

Query:   161 TVDSRFLLACGFWDNSFREPFT-TMYLA-LQEGKFDHPNRLFSSISLAWKNC-----QRD 213
             T D+R++L CGFWD SFR   T T  L  +  G +D    L  S S    +C      RD
Sbjct:   479 TADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRD 538

Query:   214 TSDVKV-----HTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTMN 265
              + +       H   GD   S D P+    P +V+   +  +V   V  E G + +    
Sbjct:   539 ATLLLWYWSGRHHIIGDNPNSSDYPA----PRAVLTGHDHEVVCVSVCAELGLVISGAKE 594

Query:   266 GNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct:   595 GPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 631

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 5.8e-26, P = 5.8e-26
 Identities = 96/277 (34%), Positives = 138/277 (49%)

Query:    42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:  2438 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVG 2497

Query:   101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                 +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct:  2498 LR-GAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2548

Query:   161 TVDSRFLLACGFWDNSFREPFT-TMYLA-LQEGKFDHPNRLFSSISLAWKNC-----QRD 213
             T D+R++L CGFWD SFR   T T  L  +  G +D    L  S S    +C      RD
Sbjct:  2549 TADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRD 2608

Query:   214 TSDVKV-----HTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTMN 265
              + +       H   GD   S D P+    P +V+   +  +V   V  E G + +    
Sbjct:  2609 ATLLLWYWSGRHHIIGDNPNSSDYPA----PRAVLTGHDHEVVCVSVCAELGLVISGAKE 2664

Query:   266 GNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct:  2665 GPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2701

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 311 (114.5 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 96/277 (34%), Positives = 138/277 (49%)

Query:    42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:  2565 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVG 2624

Query:   101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                 +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct:  2625 LR-GAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2675

Query:   161 TVDSRFLLACGFWDNSFREPFT-TMYLA-LQEGKFDHPNRLFSSISLAWKNC-----QRD 213
             T D+R++L CGFWD SFR   T T  L  +  G +D    L  S S    +C      RD
Sbjct:  2676 TADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRD 2735

Query:   214 TSDVKV-----HTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTMN 265
              + +       H   GD   S D P+    P +V+   +  +V   V  E G + +    
Sbjct:  2736 ATLLLWYWSGRHHIIGDNPNSSDYPA----PRAVLTGHDHEVVCVSVCAELGLVISGAKE 2791

Query:   266 GNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct:  2792 GPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2828

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 96/277 (34%), Positives = 138/277 (49%)

Query:    42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:  2575 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVG 2634

Query:   101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
                 +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct:  2635 LR-GAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2685

Query:   161 TVDSRFLLACGFWDNSFREPFT-TMYLA-LQEGKFDHPNRLFSSISLAWKNC-----QRD 213
             T D+R++L CGFWD SFR   T T  L  +  G +D    L  S S    +C      RD
Sbjct:  2686 TADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRD 2745

Query:   214 TSDVKV-----HTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHIAAFTMN 265
              + +       H   GD   S D P+    P +V+   +  +V   V  E G + +    
Sbjct:  2746 ATLLLWYWSGRHHIIGDNPNSSDYPA----PRAVLTGHDHEVVCVSVCAELGLVISGAKE 2801

Query:   266 GNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
             G  L H    D L+ L  PE    P ++ V+S G+C+
Sbjct:  2802 GPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCI 2838

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 92/274 (33%), Positives = 135/274 (49%)

Query:    42 SPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN--PD 98
             SP+MF+     DV M LKFPSNSP+ HV ANT   L MP+V+TVTAN  FA+N+W+  P 
Sbjct:  2489 SPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPA 2548

Query:    99 YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
             +  ++Q   Y          LP+ +DP++   T  +     +R + D   Q ++V   CF
Sbjct:  2549 HQGAVQDQPY---------QLPVEIDPLIACGTGTH-----RRQVTDLLDQSIQVHSQCF 2594

Query:   159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNCQ--RDT 214
             V T D+R++L CGFWD SFR   T     +Q   G +D    L  S S    NC     +
Sbjct:  2595 VITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGS 2654

Query:   215 SDVKVHTTF--GDLLRSLDPPSG-FASPESVVMSREGVIV---VNYERGHIAAFTMNGNR 268
              D  +   +  G      D P G  A+P +++   +  I    V  E G + + +  G  
Sbjct:  2655 RDATLLLWYWNGKSSGIGDNPGGETATPRAILTGHDYEITCAAVCAELGLVLSGSQEGPC 2714

Query:   269 LRHESHNDNLQELI-PELFFLPEMLVNSN-GYCL 300
             L H  + D L+ L  PE    P+++  S  G+C+
Sbjct:  2715 LIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2748

GO:0005764 "lysosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016197 "endosomal transport" evidence=TAS

GO:0051018 "protein kinase A binding" evidence=ISA

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 6.9e-25, P = 6.9e-25
 Identities = 90/274 (32%), Positives = 135/274 (49%)

Query:    42 SPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN--PD 98
             SP+MF+     DV M LKFPSNSP+ HV ANT   L  P+V+TVTAN  FA+N+W+  P 
Sbjct:  2496 SPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPA 2555

Query:    99 YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 158
             +  ++Q   Y          LP+ +DP++      +N  + +R + D   Q ++V   CF
Sbjct:  2556 HQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQVHSQCF 2601

Query:   159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNCQ--RDT 214
             V T D+R++L CGFWD SFR   T     +Q   G +D    L  S S    NC     +
Sbjct:  2602 VITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGS 2661

Query:   215 SDVKVHTTF--GDLLRSLDPP-SGFASPESVVMSREGVIV---VNYERGHIAAFTMNGNR 268
              D  +   +  G      D P S  A+P +++   +  +    V  E G + + +  G  
Sbjct:  2662 RDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPC 2721

Query:   269 LRHESHNDNLQELI-PELFFLPEMLVNSN-GYCL 300
             L H  + D L+ L  PE    P+++  S  G+C+
Sbjct:  2722 LIHSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2755

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 298 (110.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 89/270 (32%), Positives = 132/270 (48%)

Query:    36 SHDQKYSPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINR 94
             S   + SP+MF+     DV M LKFPSNSP+ HV ANT   L  P+V+TVTAN  FA+N+
Sbjct:  2470 SSAMQVSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLTNPAVITVTANRLFAVNK 2529

Query:    95 WN--PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR 152
             W+  P +  ++Q   Y          LP+ +DP++      +N  + +R + D   Q ++
Sbjct:  2530 WHNLPAHQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQ 2575

Query:   153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC 210
             V   CFV T D+R++L CGFWD SFR   T     +Q   G +D    L  S S    NC
Sbjct:  2576 VHSQCFVITSDNRYILVCGFWDKSFRVYSTDSGKLMQVIFGHWDVVTCLARSESYIGGNC 2635

Query:   211 -----QRDTSDVKVHTTFGDLLRSLDPPSG-FASPESVVMSREGVIV---VNYERGHIAA 261
                   RD + +  +      +   +P  G FA+P +++   +  I    +  E G + +
Sbjct:  2636 YILSGSRDATLLLWYWNGKTNIVGDNPREGDFATPRAILTGHDYEITCATICAELGLVIS 2695

Query:   262 FTMNGNRLRHESHNDNLQELI-PELFFLPE 290
              +  G  L H  + D L+ L  PE    PE
Sbjct:  2696 GSKEGPCLIHSMNGDLLRTLEGPETLEGPE 2725

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 298 (110.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 96/280 (34%), Positives = 139/280 (49%)

Query:    42 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:  2480 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVD 2539

Query:   101 ASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 159
               ++ +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV
Sbjct:  2540 LGLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFV 2591

Query:   160 TTVDSRFLLACGFWDNSFREPFT-TMYLA-LQEGKFDHPNRLFSSISLAWKNC-----QR 212
              T D+R++L CGFWD SFR   T T  L  +  G +D    L  S S    +C      R
Sbjct:  2592 VTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSR 2651

Query:   213 DTSDVKV-----HTTFGDLLRSLDPPSGFASPESVVMSREGVIV---VNYERGHI--AAF 262
             D + +       H   GD   S D P+    P +V+   +  +V   V  E G +   A 
Sbjct:  2652 DATLLLWYWSGRHHIIGDNPNSSDYPA----PRAVLTGHDHEVVCVSVCAELGLVISGAK 2707

Query:   263 TMNGNRLRHESHNDNLQELI-PELFFLPEML-VNSNGYCL 300
                G  L H    D L+ L   E    P ++ V+S G+C+
Sbjct:  2708 DTEGPCLVHTITGDLLRALEGTENCLYPRLISVSSEGHCI 2747

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 90/272 (33%), Positives = 134/272 (49%)

Query:    42 SPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 100
             SP+MF+     DV M LKFPSNSP+ HV ANT   L +P+V+TVTAN  FA+N+W+    
Sbjct:  2342 SPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAVPAVITVTANRLFAVNKWH---- 2397

Query:   101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 160
              S+  P++       P  LP+ +DP++   T  +     +R + D   Q ++V   CFV 
Sbjct:  2398 -SL--PAHQGAVQDQPYQLPVEIDPLIACGTGTH-----RRQVTDLLDQSIQVHSQCFVI 2449

Query:   161 TVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRLFSSISLAWKNC-----QRD 213
             T D+R +L CGFWD SFR   T     +Q   G +D    L  S S    NC      RD
Sbjct:  2450 TSDNRHILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRD 2509

Query:   214 TSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVI---VVNYERGHIAAFTMNGNRLR 270
              + +  +          +P S   +P +++   +  I   VV  E G + + +  G  L 
Sbjct:  2510 ATLLLWYWNGKSSGIGDNPGSETTTPRAILTGHDYEITCAVVCAELGLVLSGSQEGPCLI 2569

Query:   271 HESHNDNLQELI-PELFFLPEMLVNSN-GYCL 300
             H  + D L+ L  PE    P+++  S  G+C+
Sbjct:  2570 HSMNGDLLRTLEGPENCLKPKLIQASREGHCV 2601

GO:0005764 "lysosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	330
smart01026	280	smart01026, Beach, Beige/BEACH domain	4e-28
pfam02138	274	pfam02138, Beach, Beige/BEACH domain	5e-18
cd06071	275	cd06071, Beach, BEACH (Beige and Chediak-Higashi)	9e-18
pfam02138	274	pfam02138, Beach, Beige/BEACH domain	3e-12
cd06071	275	cd06071, Beach, BEACH (Beige and Chediak-Higashi)	2e-11

>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain

 Score =  110 bits (276), Expect = 4e-28
 Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 61/154 (39%)

Query: 178 REPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA 237
            EPFTT++L LQ G+FDH +RLF S++  W++                           A
Sbjct: 107 LEPFTTLFLQLQGGRFDHADRLFHSVAATWRS---------------------------A 139

Query: 238 SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNG 297
           S ES  M+                                ++ELIPE F+LPE LVN NG
Sbjct: 140 SLES--MTD-------------------------------VKELIPEFFYLPEFLVNING 166

Query: 298 YCLGKTEDNVNINNVELPPWA-SSPEQFVRINRM 330
           +  G  +D  ++++VELPPWA  SPE+F+R +R 
Sbjct: 167 FDFGTRQDGEDVDDVELPPWAKGSPEEFIRKHRE 200

The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280

>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 273 SHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
              ++++ELIPE F+LPE L N N + LGK  D   +++VELPPWA SPE+FV  NR 
Sbjct: 140 ESMNDVKELIPEFFYLPEFLKNINNFDLGKR-DGEKVDDVELPPWAKSPEEFVYKNRK 196

Length = 274

>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

 Score = 81.5 bits (202), Expect = 9e-18
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 280 ELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
           ELIPE ++LPE  +N N +  GK +D   +N+VELPPWA SPE+F+R +R 
Sbjct: 148 ELIPEFYYLPEFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHRE 197

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275

>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
           EPFTT+++ LQ GKFDH +RLFSSI  AWK+     +DVK
Sbjct: 107 EPFTTLHIELQGGKFDHADRLFSSIEEAWKSVSESMNDVK 146

Length = 274

>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 179 EPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
           EPFTT++L+LQ G FD  +RLF+SI  +W++   + SDVK
Sbjct: 108 EPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASENPSDVK 147

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG0271|consensus	480		99.97
KOG0272|consensus	459		99.96
KOG0271|consensus	480		99.93
KOG0295|consensus	406		99.92
KOG0272|consensus	459		99.92
KOG0279|consensus	315		99.91
KOG0263|consensus	707		99.9
KOG0266|consensus	456		99.9
KOG0279|consensus	315		99.89
KOG0315|consensus	311		99.89
KOG0286|consensus	343		99.88
KOG0319|consensus	775		99.88
KOG0319|consensus	775		99.86
KOG0273|consensus	524		99.86
KOG0281|consensus	499		99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0306|consensus	888		99.82
KOG0266|consensus	456		99.82
KOG0286|consensus	343		99.81
KOG0291|consensus	893		99.81
KOG0293|consensus	519		99.81
KOG0281|consensus	499		99.81
KOG0285|consensus	460		99.8
KOG0263|consensus	707		99.8
KOG0276|consensus	794		99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.79
KOG0645|consensus	312		99.78
PTZ00421	493	coronin; Provisional	99.78
PTZ00420	568	coronin; Provisional	99.78
KOG0316|consensus	307		99.78
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.78
KOG0274|consensus	537		99.78
KOG0318|consensus	603		99.78
KOG0313|consensus	423		99.77
PLN00181	793	protein SPA1-RELATED; Provisional	99.77
cd06071	275	Beach BEACH (Beige and Chediak-Higashi) domains, i	99.76
KOG0316|consensus	307		99.76
KOG0295|consensus	406		99.76
KOG0291|consensus	893		99.76
KOG0265|consensus	338		99.75
KOG0300|consensus	481		99.74
KOG0645|consensus	312		99.74
KOG0301|consensus	745		99.74
KOG0301|consensus	745		99.74
KOG0296|consensus	399		99.73
KOG0318|consensus	603		99.73
KOG0265|consensus	338		99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.72
KOG1332|consensus	299		99.72
KOG0292|consensus	1202		99.71
KOG0284|consensus	464		99.7
KOG0282|consensus	503		99.69
PTZ00420	568	coronin; Provisional	99.69
KOG0276|consensus	794		99.68
KOG0308|consensus	735		99.68
KOG0278|consensus	334		99.67
PF02138	270	Beach: Beige/BEACH domain; InterPro: IPR000409 The	99.67
KOG0643|consensus	327		99.66
PTZ00421	493	coronin; Provisional	99.64
KOG0277|consensus	311		99.64
KOG0273|consensus	524		99.64
KOG0313|consensus	423		99.64
KOG0275|consensus	508		99.63
KOG0267|consensus	825		99.62
KOG0288|consensus	459		99.62
KOG0285|consensus	460		99.62
KOG0315|consensus	311		99.61
KOG0268|consensus	433		99.59
KOG0284|consensus	464		99.59
KOG0292|consensus	1202		99.59
KOG0274|consensus	537		99.56
KOG1446|consensus	311		99.56
KOG0306|consensus	888		99.56
KOG0275|consensus	508		99.55
KOG2096|consensus	420		99.55
KOG0973|consensus	942		99.55
KOG0288|consensus	459		99.53
KOG0310|consensus	487		99.53
KOG0283|consensus	712		99.51
KOG0289|consensus	506		99.51
KOG0294|consensus	362		99.5
KOG0296|consensus	399		99.5
KOG0305|consensus	484		99.48
KOG0310|consensus	487		99.48
KOG1539|consensus	910		99.47
KOG0293|consensus	519		99.47
KOG0299|consensus	479		99.45
KOG1408|consensus	1080		99.44
KOG1408|consensus	1080		99.44
KOG0283|consensus	712		99.44
KOG0264|consensus	422		99.43
KOG0772|consensus	641		99.42
KOG0278|consensus	334		99.41
KOG0646|consensus	476		99.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.36
KOG0302|consensus	440		99.35
KOG0640|consensus	430		99.35
KOG2096|consensus	420		99.34
KOG0300|consensus	481		99.34
KOG0299|consensus	479		99.33
KOG0305|consensus	484		99.32
KOG1787|consensus	1126		99.31
KOG0282|consensus	503		99.3
KOG0277|consensus	311		99.3
KOG0772|consensus	641		99.3
KOG1446|consensus	311		99.28
KOG0644|consensus	1113		99.28
KOG1407|consensus	313		99.27
KOG0973|consensus	942		99.27
PRK11028	330	6-phosphogluconolactonase; Provisional	99.27
KOG0641|consensus	350		99.26
KOG0289|consensus	506		99.26
KOG0269|consensus	839		99.25
PRK01742	429	tolB translocation protein TolB; Provisional	99.23
KOG0647|consensus	347		99.23
KOG4378|consensus	673		99.22
KOG0321|consensus	720		99.22
KOG1063|consensus	764		99.21
COG2319	466	FOG: WD40 repeat [General function prediction only	99.2
KOG0642|consensus	577		99.19
KOG0270|consensus	463		99.18
KOG0643|consensus	327		99.17
KOG0269|consensus	839		99.17
KOG1063|consensus	764		99.16
KOG0640|consensus	430		99.15
KOG0308|consensus	735		99.15
KOG1009|consensus	434		99.15
KOG1407|consensus	313		99.15
KOG0267|consensus	825		99.15
KOG4283|consensus	397		99.14
KOG0294|consensus	362		99.14
KOG1036|consensus	323		99.14
KOG2055|consensus	514		99.14
KOG2048|consensus	691		99.09
KOG0264|consensus	422		99.09
KOG4283|consensus	397		99.08
KOG0641|consensus	350		99.08
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
COG2319	466	FOG: WD40 repeat [General function prediction only	99.07
KOG2919|consensus	406		99.07
KOG1034|consensus	385		99.06
PRK05137	435	tolB translocation protein TolB; Provisional	99.05
KOG2445|consensus	361		99.04
KOG0307|consensus	1049		99.04
KOG0650|consensus	733		99.03
KOG1538|consensus	1081		99.03
KOG0639|consensus	705		99.03
KOG1274|consensus	933		99.01
KOG0303|consensus	472		99.0
KOG0270|consensus	463		99.0
PRK03629	429	tolB translocation protein TolB; Provisional	98.99
KOG0647|consensus	347		98.98
KOG0268|consensus	433		98.97
KOG1274|consensus	933		98.96
KOG0303|consensus	472		98.95
KOG0322|consensus	323		98.92
PRK02889	427	tolB translocation protein TolB; Provisional	98.91
KOG1539|consensus	910		98.9
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.89
KOG0771|consensus	398		98.89
KOG2048|consensus	691		98.88
KOG2106|consensus	626		98.87
KOG4378|consensus	673		98.86
KOG2106|consensus	626		98.83
KOG1332|consensus	299		98.83
PRK01742	429	tolB translocation protein TolB; Provisional	98.83
KOG0649|consensus	325		98.77
KOG0639|consensus	705		98.7
PRK11028	330	6-phosphogluconolactonase; Provisional	98.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.68
KOG1273|consensus	405		98.67
KOG4328|consensus	498		98.67
KOG1036|consensus	323		98.66
KOG4328|consensus	498		98.66
KOG0642|consensus	577		98.66
KOG0646|consensus	476		98.64
KOG0321|consensus	720		98.64
KOG2919|consensus	406		98.63
PRK00178	430	tolB translocation protein TolB; Provisional	98.62
PRK04792	448	tolB translocation protein TolB; Provisional	98.58
KOG1524|consensus	737		98.58
KOG1517|consensus	1387		98.58
PRK03629	429	tolB translocation protein TolB; Provisional	98.56
KOG0974|consensus	967		98.55
KOG1034|consensus	385		98.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.5
KOG1786|consensus	1081		98.46
KOG1445|consensus	1012		98.43
KOG1524|consensus	737		98.42
KOG1538|consensus	1081		98.4
KOG1445|consensus	1012		98.4
PRK01029	428	tolB translocation protein TolB; Provisional	98.4
KOG2111|consensus	346		98.4
KOG2055|consensus	514		98.38
KOG1007|consensus	370		98.37
KOG2110|consensus	391		98.36
KOG0644|consensus	1113		98.34
PRK05137	435	tolB translocation protein TolB; Provisional	98.31
KOG1188|consensus	376		98.29
KOG1009|consensus	434		98.29
KOG0307|consensus	1049		98.27
KOG0302|consensus	440		98.26
KOG0771|consensus	398		98.23
KOG0322|consensus	323		98.19
KOG1787|consensus	1126		98.17
KOG0974|consensus	967		98.15
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.14
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.14
KOG1963|consensus	792		98.11
PRK04922	433	tolB translocation protein TolB; Provisional	98.08
KOG1786|consensus	1081		98.05
PRK04043	419	tolB translocation protein TolB; Provisional	98.05
KOG2394|consensus	636		98.03
KOG1517|consensus	1387		98.03
KOG1007|consensus	370		98.03
PRK02889	427	tolB translocation protein TolB; Provisional	98.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.99
KOG1240|consensus	1431		97.97
KOG2110|consensus	391		97.95
KOG2394|consensus	636		97.93
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.9
KOG1523|consensus	361		97.9
KOG0649|consensus	325		97.86
KOG2445|consensus	361		97.85
KOG1963|consensus	792		97.74
KOG1310|consensus	758		97.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.69
KOG0650|consensus	733		97.66
KOG1587|consensus	555		97.66
KOG1272|consensus	545		97.64
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.64
KOG4227|consensus	609		97.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.63
PRK00178	430	tolB translocation protein TolB; Provisional	97.62
KOG4547|consensus	541		97.6
KOG1334|consensus	559		97.59
PRK04792	448	tolB translocation protein TolB; Provisional	97.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.52
KOG1310|consensus	758		97.47
KOG2139|consensus	445		97.45
KOG3914|consensus	390		97.32
PRK01029	428	tolB translocation protein TolB; Provisional	97.29
KOG1273|consensus	405		97.27
KOG4497|consensus	447		97.27
KOG1064|consensus	2439		97.2
KOG4190|consensus	1034		97.18
KOG2315|consensus	566		97.16
KOG2111|consensus	346		97.15
KOG3914|consensus	390		97.14
KOG2321|consensus	703		97.13
KOG1188|consensus	376		97.11
KOG1240|consensus	1431		97.11
KOG1354|consensus	433		97.05
KOG4190|consensus	1034		97.01
KOG0309|consensus	1081		96.9
KOG4547|consensus	541		96.79
KOG0290|consensus	364		96.77
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.75
KOG4227|consensus	609		96.69
KOG1272|consensus	545		96.68
KOG0290|consensus	364		96.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.47
COG4946	668	Uncharacterized protein related to the periplasmic	96.42
KOG1334|consensus	559		96.39
PRK04043	419	tolB translocation protein TolB; Provisional	96.35
KOG1587|consensus	555		96.23
KOG3881|consensus	412		96.14
KOG2315|consensus	566		96.14
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.03
KOG3881|consensus	412		95.95
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.9
KOG1064|consensus	2439		95.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.66
KOG4497|consensus	447		95.61
KOG2321|consensus	703		95.54
KOG1409|consensus	404		95.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.09
KOG2041|consensus	1189		94.91
KOG0309|consensus	1081		94.29
KOG2139|consensus	445		94.04
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	93.51
KOG2041|consensus	1189		93.49
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	93.14
KOG1523|consensus	361		93.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	92.94
KOG1409|consensus	404		92.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	90.97
KOG4532|consensus	344		90.23
KOG0882|consensus	558		89.79
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	89.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.15
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.12
KOG4714|consensus	319		88.75
KOG2695|consensus	425		88.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.91
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	87.78
KOG2114|consensus	933		87.67
KOG1916|consensus	1283		87.33
KOG1832|consensus	1516		87.02
KOG4532|consensus	344		86.7
KOG2695|consensus	425		86.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	86.02
PRK02888	635	nitrous-oxide reductase; Validated	85.29
PRK02888	635	nitrous-oxide reductase; Validated	85.14
KOG0280|consensus	339		84.63
KOG1354|consensus	433		83.8
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.07
KOG2079|consensus	1206		82.66
PRK13616	591	lipoprotein LpqB; Provisional	82.46
KOG3617|consensus	1416		82.21
KOG0280|consensus	339		81.95
KOG3621|consensus	726		81.87
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	81.51
KOG1920|consensus	1265		80.95

>KOG0271|consensus

Probab=99.97  E-value=6.2e-31  Score=251.71  Aligned_cols=240  Identities=15%  Similarity=0.144  Sum_probs=190.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------Cc------ceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------SP------MMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------~~------l~~~~~~~d~~~~v~Fs~   61 (330)
                      |||+.|.||||||+.+..+++|++||..||.+|++||||+.             +|      -..+++|...|+.++|-|
T Consensus       131 ~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             EecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence            68999999999999999999999999999999999999998             11      123568888888888876


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-CcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcce
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPK  140 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~  140 (330)
                      -            ++.++...+||++.|++|++|+.... .+..+.||+.    ++.|+.---++.+.++|.+.+.++|+
T Consensus       211 ~------------hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~----~VTCvrwGG~gliySgS~DrtIkvw~  274 (480)
T KOG0271|consen  211 L------------HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA----SVTCVRWGGEGLIYSGSQDRTIKVWR  274 (480)
T ss_pred             c------------ccCCCccceecccCCCCEEEEEccCceEEEEeccCcc----ceEEEEEcCCceEEecCCCceEEEEE
Confidence            3            34577788999999999999999754 4677779984    66778777777777666555555442


Q ss_pred             e-------ccCCC-------------------C-----------------------------------------------
Q psy682          141 R-------HLGDN-------------------F-----------------------------------------------  147 (330)
Q Consensus       141 ~-------~l~~~-------------------~-----------------------------------------------  147 (330)
                      -       .+.++                   |                                               
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            2       11111                   0                                               


Q ss_pred             -----ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE----eHHHHHhhhccC
Q psy682          148 -----SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS----SISLAWKNCQRD  213 (330)
Q Consensus       148 -----~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia----St~~lW~~SgS~  213 (330)
                           ..+..+|.   +.+.||||++| ||++|.|++||| |+-.+|+.+.++.||-+.|  ++    |-..+   |||.
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkL-W~g~tGk~lasfRGHv~~VYqvawsaDsRLlV---S~Sk  429 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKL-WDGRTGKFLASFRGHVAAVYQVAWSADSRLLV---SGSK  429 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCccE-EEEeecccceee-eeCCCcchhhhhhhccceeEEEEeccCccEEE---EcCC
Confidence                 01223333   67899999999 778889999999 9999999999999999988  33    23444   9999


Q ss_pred             CCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCe-EEEEe
Q psy682          214 TSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGH-IAAFT  263 (330)
Q Consensus       214 Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~-~~~~s  263 (330)
                      |.|+|+|.. +-++...|.||.+  .|+.|.+||||+.++||+++. +.+|.
T Consensus       430 DsTLKvw~V~tkKl~~DLpGh~D--EVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  430 DSTLKVWDVRTKKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceEEEEEeeeeeecccCCCCCc--eEEEEEecCCCceeecCCCceEEEeec
Confidence            999999986 6788889999999  999999999999999998665 45553

>KOG0272|consensus

Probab=99.96  E-value=4.8e-30  Score=247.74  Aligned_cols=235  Identities=16%  Similarity=0.111  Sum_probs=193.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCC-Cc-------------------CcceeeeecCccEEEEEeC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQ-KY-------------------SPMMFSTVLDDVCMSLKFP   60 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg-~~-------------------~~l~~~~~~~d~~~~v~Fs   60 (330)
                      ||||.+|++|||+..+++++.+|.||.+.|-++.|+|.. ..                   .|+..+++|...|-.|+|+
T Consensus       191 aT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH  270 (459)
T KOG0272|consen  191 ATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH  270 (459)
T ss_pred             EEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence            689999999999999999999999999999999999983 32                   4556678999999999999


Q ss_pred             CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc
Q psy682           61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP  139 (330)
Q Consensus        61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~  139 (330)
                      |+|+.+                 +|++.|.|-++|+..... +....||+.    .+++++|-+||.++. |+|.+.--+
T Consensus       271 PsG~~L-----------------~TasfD~tWRlWD~~tk~ElL~QEGHs~----~v~~iaf~~DGSL~~-tGGlD~~~R  328 (459)
T KOG0272|consen  271 PSGKFL-----------------GTASFDSTWRLWDLETKSELLLQEGHSK----GVFSIAFQPDGSLAA-TGGLDSLGR  328 (459)
T ss_pred             CCCcee-----------------eecccccchhhcccccchhhHhhccccc----ccceeEecCCCceee-ccCccchhh
Confidence            999975                 999999999999987544 555569984    788899999999774 344433334


Q ss_pred             eeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe---HHHHHh
Q psy682          140 KRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS---ISLAWK  208 (330)
Q Consensus       140 ~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS---t~~lW~  208 (330)
                      .|.+..- -.-.+.+|.   ..++|+|+|.. +|+|+.|+++|| |++..-+.+.++-+|.+.|    +..   ...+  
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~-lATgs~Dnt~kV-WDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~--  404 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYH-LATGSSDNTCKV-WDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV--  404 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceE-EeecCCCCcEEE-eeecccccceecccccchhhheEecccCCeEEE--
Confidence            4444221 011245565   57899999965 788889999999 9999888999999999987    221   3334  


Q ss_pred             hhccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          209 NCQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       209 ~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                       ++|.|+|+|||+ .+++++++|.||++  .|.+|.+||||+.+++++ |.++++|.+
T Consensus       405 -TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  405 -TASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             -EcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeeccC
Confidence             899999999995 57899999999999  999999999999999998 778999864

>KOG0271|consensus

Probab=99.93  E-value=2.2e-25  Score=213.80  Aligned_cols=225  Identities=13%  Similarity=0.185  Sum_probs=178.9

Q ss_pred             eeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682           22 AFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus        22 tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      ++.||.+.|-+++|||||..                  .|+.+-.+|...|.+|..||||..|                 
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~i-----------------  172 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKI-----------------  172 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchh-----------------
Confidence            46999999999999999987                  6677778999999999999999985                 


Q ss_pred             EEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCccccC-----CCc-eeccCCCCCCCcceeccCCCCccceeeee
Q psy682           84 VTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTL-----DPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH  155 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~fs~-----D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~  155 (330)
                      ||++.+++|++|++..++  .+.++||..    +..+|+++|     +.. +++++.+++..+|.-.++. ....+.+|.
T Consensus       173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K----~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT  247 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQIGRALRGHKK----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHT  247 (480)
T ss_pred             hccccCCeEEEecCCCCCcccccccCccc----ceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCc
Confidence            999999999999986554  555669974    666677643     334 6665555555555444322 123345555


Q ss_pred             e---EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------------------------------
Q psy682          156 N---CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------------------------------  199 (330)
Q Consensus       156 ~---~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------------------------------  199 (330)
                      +   |+.---+|  ++.+||.|+|||+ |....|++.+++.||..+|                                 
T Consensus       248 ~~VTCvrwGG~g--liySgS~DrtIkv-w~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  248 ASVTCVRWGGEG--LIYSGSQDRTIKV-WRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             cceEEEEEcCCc--eEEecCCCceEEE-EEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            3   55554455  4777889999999 9999999999999999998                                 


Q ss_pred             --------------EEe-----HHHHHhh------------------------------hccCCCcEEEEc-ccCceeee
Q psy682          200 --------------FSS-----ISLAWKN------------------------------CQRDTSDVKVHT-TFGDLLRS  229 (330)
Q Consensus       200 --------------iaS-----t~~lW~~------------------------------SgS~Dgtvkl~~-~~G~ll~t  229 (330)
                                    ++|     |+.+|+-                              |||-|+.||||+ .+|++|.+
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las  404 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS  404 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh
Confidence                          122     6667765                              999999999996 58999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeecc
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~  273 (330)
                      |+||-+  .|+.|++|.|..+|||++ |.+|..|.+.-|.|+...
T Consensus       405 fRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  405 FRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             hhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            999999  999999999999999998 667999998888877654

>KOG0295|consensus

Probab=99.92  E-value=3.8e-25  Score=210.86  Aligned_cols=199  Identities=15%  Similarity=0.159  Sum_probs=167.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----Ccc--------------eeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----SPM--------------MFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----~~l--------------~~~~~~~d~~~~v~Fs~   61 (330)
                      |+|++|.+||+||..+|++..+|+||.+.|.+|+|+..|+.     +-+              ....+|+-.|-+|+|-|
T Consensus       124 ~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P  203 (406)
T KOG0295|consen  124 VSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP  203 (406)
T ss_pred             EEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe
Confidence            57889999999999999999999999999999999999988     111              12448899999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcce
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPK  140 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~  140 (330)
                      .|..|                 +|+++|.|||.|..+.+. +.++++|.+                              
T Consensus       204 ~gd~i-----------------lS~srD~tik~We~~tg~cv~t~~~h~e------------------------------  236 (406)
T KOG0295|consen  204 LGDHI-----------------LSCSRDNTIKAWECDTGYCVKTFPGHSE------------------------------  236 (406)
T ss_pred             cCCee-----------------eecccccceeEEecccceeEEeccCchH------------------------------
Confidence            99764                 999999999999997664 444445531                              


Q ss_pred             eccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--E-----e---------
Q psy682          141 RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--S-----S---------  202 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--a-----S---------  202 (330)
                                   +...|+++-||.. +|+++-|.++|+ |-++++...+.+.+|.-.|  +  +     +         
T Consensus       237 -------------wvr~v~v~~DGti-~As~s~dqtl~v-W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  237 -------------WVRMVRVNQDGTI-IASCSNDQTLRV-WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             -------------hEEEEEecCCeeE-EEecCCCceEEE-EEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence                         2356778999965 777889999999 9999998899999999988  1  1     1         


Q ss_pred             ---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          203 ---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       203 ---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                         .+..   |||.|+|||+|+. +|++|-||.||.+  .|+.|+|+|.|++|+|. ++++++.|+.+.
T Consensus       302 ~~~~~l~---s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  302 NGGQVLG---SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             CCccEEE---eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence               1333   8999999999986 7999999999999  99999999999999998 799999998653

>KOG0272|consensus

Probab=99.92  E-value=1.3e-25  Score=217.11  Aligned_cols=194  Identities=14%  Similarity=0.187  Sum_probs=159.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |||+.||+||||++.+..++..|.||-..|-.|||.|+|++                  .-+..+.||...|..++|.||
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D  314 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD  314 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCC
Confidence            68999999999999988999999999999999999999999                  122336799999999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      |.++                 +|++.|..-++|+...+. +..+.||.    .+++.++|+|+|. +|+++++++-++|.
T Consensus       315 GSL~-----------------~tGGlD~~~RvWDlRtgr~im~L~gH~----k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  315 GSLA-----------------ATGGLDSLGRVWDLRTGRCIMFLAGHI----KEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             Ccee-----------------eccCccchhheeecccCcEEEEecccc----cceeeEeECCCceEEeecCCCCcEEEee
Confidence            9985                 999999999999987665 66667998    5788899999999 88767776666664


Q ss_pred             eccCCCCccceeeeee---EEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE------eHHHHHhhh
Q psy682          141 RHLGDNFSQKLRVRHN---CFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS------SISLAWKNC  210 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~---~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via------St~~lW~~S  210 (330)
                      .+.... .-++..|++   -|.|+| -|++ +++++.|+++|+ |+..++.++++|.||.+.|+.      +..++   |
T Consensus       374 LR~r~~-ly~ipAH~nlVS~Vk~~p~~g~f-L~TasyD~t~ki-Ws~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~---t  447 (459)
T KOG0272|consen  374 LRMRSE-LYTIPAHSNLVSQVKYSPQEGYF-LVTASYDNTVKI-WSTRTWSPLKSLAGHEGKVISLDISPDSQAIA---T  447 (459)
T ss_pred             eccccc-ceecccccchhhheEecccCCeE-EEEcccCcceee-ecCCCcccchhhcCCccceEEEEeccCCceEE---E
Confidence            332332 234667764   577999 5555 555567999999 999999999999999999953      24444   9


Q ss_pred             ccCCCcEEEEc
Q psy682          211 QRDTSDVKVHT  221 (330)
Q Consensus       211 gS~Dgtvkl~~  221 (330)
                      +|.|+|||||.
T Consensus       448 ~s~DRT~KLW~  458 (459)
T KOG0272|consen  448 SSFDRTIKLWR  458 (459)
T ss_pred             eccCceeeecc
Confidence            99999999995

>KOG0279|consensus

Probab=99.91  E-value=9.8e-24  Score=195.76  Aligned_cols=239  Identities=12%  Similarity=0.099  Sum_probs=178.9

Q ss_pred             CcccCCCcEEEeeccc-----ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFN-----LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-----g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v   57 (330)
                      .+++.|++|.+|++..     |..++.|+||...|..|+.|+||++                  .+...+-||...|++|
T Consensus        32 ~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv  111 (315)
T KOG0279|consen   32 VSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV  111 (315)
T ss_pred             EEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE
Confidence            3789999999998763     7789999999999999999999999                  1122356999999999


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC---ceeccCCCC
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP---ILTHPTSNN  134 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~---~l~~~s~~~  134 (330)
                      +|+||..-                 +||+++|+|||+||.-+...-+...+.+  ++++.+|.|+|+.   .+++++.+.
T Consensus       112 a~s~dn~q-----------------ivSGSrDkTiklwnt~g~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~Dk  172 (315)
T KOG0279|consen  112 AFSTDNRQ-----------------IVSGSRDKTIKLWNTLGVCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWDK  172 (315)
T ss_pred             EecCCCce-----------------eecCCCcceeeeeeecccEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCCc
Confidence            99998764                 3999999999999998877666665544  6899999999984   466645544


Q ss_pred             CCCcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE---EeHHHHH
Q psy682          135 NAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF---SSISLAW  207 (330)
Q Consensus       135 ~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi---aSt~~lW  207 (330)
                      +.+  .|.+.. .+.+++.+|+   +.+++||||.. .++|..|+.+.| |+++.+|-++++ +|.+.|.   .+--+.|
T Consensus       173 tvK--vWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGgkdg~~~L-wdL~~~k~lysl-~a~~~v~sl~fspnryw  247 (315)
T KOG0279|consen  173 TVK--VWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGGKDGEAML-WDLNEGKNLYSL-EAFDIVNSLCFSPNRYW  247 (315)
T ss_pred             eEE--EEccCCcchhhccccccccEEEEEECCCCCE-EecCCCCceEEE-EEccCCceeEec-cCCCeEeeEEecCCcee
Confidence            444  444432 2334555554   68899999977 677889999999 999999988777 6777772   2322333


Q ss_pred             hhhccCCCcEEEEcc-cCceeeecCCCCC----C---CCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682          208 KNCQRDTSDVKVHTT-FGDLLRSLDPPSG----F---ASPESVVMSREGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~----~---~~v~~v~fS~dG~~l~s~-~~~~~~~~s~  264 (330)
                      - ++..+-.||||+. .+..+.+|+.-..    .   ..-.++++|+||++|.+| .++-|+.|.+
T Consensus       248 L-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  248 L-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             E-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            3 5666677999976 5677777664211    0   123578999999999998 5777877753

>KOG0263|consensus

Probab=99.90  E-value=7.3e-24  Score=216.89  Aligned_cols=176  Identities=17%  Similarity=0.233  Sum_probs=149.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +|+|+|++||||.+.+-..+..++||...||.|.|+|-|.+    |                                  
T Consensus       467 lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyY----F----------------------------------  508 (707)
T KOG0263|consen  467 LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYY----F----------------------------------  508 (707)
T ss_pred             eeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceE----E----------------------------------
Confidence            47899999999999998899999999999999999997776    4                                  


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  159 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~  159 (330)
                         |||+.|.|.++|..+... ++.+.||                                      +.     -..|+.
T Consensus       509 ---atas~D~tArLWs~d~~~PlRifagh--------------------------------------ls-----DV~cv~  542 (707)
T KOG0263|consen  509 ---ATASHDQTARLWSTDHNKPLRIFAGH--------------------------------------LS-----DVDCVS  542 (707)
T ss_pred             ---EecCCCceeeeeecccCCchhhhccc--------------------------------------cc-----ccceEE
Confidence               899999999999997642 2222222                                      21     136999


Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---eHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCC
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---SISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSG  235 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---St~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~  235 (330)
                      |.|++.| +++||.|+|+|+ |+..+|..++.+.||.+.|.+   |-...|-.||+.||.|+||+. .|+++.+|.+|.+
T Consensus       543 FHPNs~Y-~aTGSsD~tVRl-WDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~  620 (707)
T KOG0263|consen  543 FHPNSNY-VATGSSDRTVRL-WDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG  620 (707)
T ss_pred             ECCcccc-cccCCCCceEEE-EEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC
Confidence            9999999 778899999999 999999999999999999942   423333339999999999976 7899999999988


Q ss_pred             CCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          236 FASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       236 ~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                        .|.+|+||+||.+||+++ +.++.+|..
T Consensus       621 --ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  621 --TIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             --ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence              999999999999999996 778999963

>KOG0266|consensus

Probab=99.90  E-value=3.3e-23  Score=208.58  Aligned_cols=241  Identities=13%  Similarity=0.174  Sum_probs=190.4

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEe
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKF   59 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~F   59 (330)
                      |+++.|++|++|+..+++  ++.++.+|...|.+++|||||+.                   ..++++.+|...|+++.|
T Consensus       175 ~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f  254 (456)
T KOG0266|consen  175 AAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAF  254 (456)
T ss_pred             EEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEe
Confidence            468899999999998888  88899999999999999999977                   234567799999999999


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP  137 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~  137 (330)
                      +|+|..+                 +|++.|++|++|+..+ ...+.+.+|++    ++..+.|++|+. +++++.++...
T Consensus       255 ~p~g~~i-----------------~Sgs~D~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  255 SPDGNLL-----------------VSGSDDGTVRIWDVRTGECVRKLKGHSD----GISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             cCCCCEE-----------------EEecCCCcEEEEeccCCeEEEeeeccCC----ceEEEEECCCCCEEEEcCCCccEE
Confidence            9999864                 9999999999999985 44777789984    677899999999 55544444333


Q ss_pred             cceeccCC-----CCccceee-eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE----eHHH
Q psy682          138 VPKRHLGD-----NFSQKLRV-RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS----SISL  205 (330)
Q Consensus       138 ~~~~~l~~-----~~~~~~~~-~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia----St~~  205 (330)
                      +|....+.     .+...... ...++.|+|+|++|++ ++.|+++|+ |++..++......+|..-+  +.    ++.-
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~-~~~d~~~~~-w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS-ASLDRTLKL-WDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG  391 (456)
T ss_pred             EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE-ecCCCeEEE-EEccCCcceeeecccCCcceeEecccccCCC
Confidence            33322222     11111111 2357789999999555 668999999 9999999999999999863  21    2333


Q ss_pred             HHhhhccCCCcEEEEcc-cCceeeecCCC-CCCCCCcEEEeCCCccEEEEcc---CCeEEEEeeCC
Q psy682          206 AWKNCQRDTSDVKVHTT-FGDLLRSLDPP-SGFASPESVVMSREGVIVVNYE---RGHIAAFTMNG  266 (330)
Q Consensus       206 lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~s~~---~~~~~~~s~nG  266 (330)
                      .|-.+|+.|++|.+|+. +|..+..|.+| ..  .|..++++|...++++++   ++.+..|..+.
T Consensus       392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~--~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA--AVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             CeEEEEeCCceEEEEeCCccchhhhhcCCCCC--ceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            34449999999999987 49999999999 66  899999999999999985   77888887654

>KOG0279|consensus

Probab=99.89  E-value=7.3e-23  Score=189.99  Aligned_cols=211  Identities=16%  Similarity=0.166  Sum_probs=163.5

Q ss_pred             cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      .+.-+|+||.++|.++|..+++.-                                        +.+++++|.++-+|..
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~----------------------------------------~l~sasrDk~ii~W~L   45 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSD----------------------------------------ILVSASRDKTIIVWKL   45 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCc----------------------------------------eEEEcccceEEEEEEe
Confidence            456789999999999999886443                                        4699999999999998


Q ss_pred             CCCC------cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecCCCeE
Q psy682           98 DYAA------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFL  167 (330)
Q Consensus        98 ~~~~------~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i  167 (330)
                      +...      .+.+.||+..    +..+.+++|+.++. |++-+..++.|.+.. .-.+.+.+|.   .+++|+||.+. 
T Consensus        46 ~~dd~~~G~~~r~~~GHsH~----v~dv~~s~dg~~al-S~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q-  119 (315)
T KOG0279|consen   46 TSDDIKYGVPVRRLTGHSHF----VSDVVLSSDGNFAL-SASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ-  119 (315)
T ss_pred             ccCccccCceeeeeeccceE----ecceEEccCCceEE-eccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce-
Confidence            5333      5666799864    45599999999664 233333344555432 3345677776   59999999998 


Q ss_pred             EEeeccCCeEEEeeecccccccccccCC--CCcE----EEe----HHHHHhhhccCCCcEEEEcccC-ceeeecCCCCCC
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDH--PNRL----FSS----ISLAWKNCQRDTSDVKVHTTFG-DLLRSLDPPSGF  236 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH--~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~~G-~ll~tL~~h~~~  236 (330)
                      |.+||.|+||++ |++. |.+.-++.++  .++|    |++    -+++   |+|.|+|||+|+..+ ++..++-||++ 
T Consensus       120 ivSGSrDkTikl-wnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv---s~s~DktvKvWnl~~~~l~~~~~gh~~-  193 (315)
T KOG0279|consen  120 IVSGSRDKTIKL-WNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIV---SASWDKTVKVWNLRNCQLRTTFIGHSG-  193 (315)
T ss_pred             eecCCCcceeee-eeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEE---EccCCceEEEEccCCcchhhccccccc-
Confidence            778999999999 9996 6666566655  6888    443    2334   999999999998865 77788999999 


Q ss_pred             CCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCccccccc
Q psy682          237 ASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDNLQEL  281 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~~dVkEL  281 (330)
                       .|+.+++||||.+.+||+ ++.+.+|..| ||.|.++.....|..|
T Consensus       194 -~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl  239 (315)
T KOG0279|consen  194 -YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL  239 (315)
T ss_pred             -cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE
Confidence             899999999999999997 7788899776 7778888877777765

>KOG0315|consensus

Probab=99.89  E-value=7e-22  Score=181.37  Aligned_cols=245  Identities=15%  Similarity=0.146  Sum_probs=193.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      ||||.|-|||+|+..+|.-..|++...+-|+.+.+.||++.                   +|.+.+.+|...|++|.|.-
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence            68999999999999999999999999999999999999998                   57888999999999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      +|.++                 .|++.|+++|+|++..........|.    ++++++-+.|+.. |.+  ++.+-.++.
T Consensus        94 dgrWM-----------------yTgseDgt~kIWdlR~~~~qR~~~~~----spVn~vvlhpnQteLis--~dqsg~irv  150 (311)
T KOG0315|consen   94 DGRWM-----------------YTGSEDGTVKIWDLRSLSCQRNYQHN----SPVNTVVLHPNQTELIS--GDQSGNIRV  150 (311)
T ss_pred             cCeEE-----------------EecCCCceEEEEeccCcccchhccCC----CCcceEEecCCcceEEe--ecCCCcEEE
Confidence            99996                 88899999999999664444444554    6888999999988 664  444444678


Q ss_pred             eccCCCC-----ccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccc------cccccccCCCCcEE---Ee---H
Q psy682          141 RHLGDNF-----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYL------ALQEGKFDHPNRLF---SS---I  203 (330)
Q Consensus       141 ~~l~~~~-----~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g------~l~~~l~gH~d~Vi---aS---t  203 (330)
                      |.|+.+.     -+.......+..+.|||++ ++++-.-++.-+ |++..+      +.+..+..|...++   .|   +
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyv-W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYV-WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEE-EEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence            8887652     1111122356779999999 555657888889 998653      23555667777662   23   4


Q ss_pred             HHHHhhhccCCCcEEEEcccCc--eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc
Q psy682          204 SLAWKNCQRDTSDVKVHTTFGD--LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN  275 (330)
Q Consensus       204 ~~lW~~SgS~Dgtvkl~~~~G~--ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~  275 (330)
                      -++   ++|.|+|||||+.++-  +-..|++|+.  .|+..+||.||+.|++|+ +...++|++ +|+.++....|
T Consensus       229 ~la---t~ssdktv~iwn~~~~~kle~~l~gh~r--WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  229 YLA---TCSSDKTVKIWNTDDFFKLELVLTGHQR--WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             EEE---eecCCceEEEEecCCceeeEEEeecCCc--eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            444   7899999999998774  5567999998  999999999999999995 888999975 56666655543

>KOG0286|consensus

Probab=99.88  E-value=9.6e-22  Score=183.61  Aligned_cols=232  Identities=16%  Similarity=0.142  Sum_probs=179.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---C---------cc------------eeeeecCccEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---S---------PM------------MFSTVLDDVCMS   56 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---~---------~l------------~~~~~~~d~~~~   56 (330)
                      +|||.||.+.+||..+....+.++..+.||-..||||-|+.   .         ++            ..+.+|..-+-.
T Consensus        71 vSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc  150 (343)
T KOG0286|consen   71 VSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC  150 (343)
T ss_pred             EeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEE
Confidence            58999999999999999999999999999999999999988   0         00            113344444455


Q ss_pred             EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCC
Q psy682           57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSN  133 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~  133 (330)
                      ..|.+|+++                  +|+++|.|.-+|+...+. ...+.||++.    +.+|+++| ||. +.+++.+
T Consensus       151 C~f~dD~~i------------------lT~SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~ntFvSg~cD  208 (343)
T KOG0286|consen  151 CRFLDDNHI------------------LTGSGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGNTFVSGGCD  208 (343)
T ss_pred             EEEcCCCce------------------EecCCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCCeEEecccc
Confidence            555555554                  788999999999997555 5556699975    45699999 999 5554555


Q ss_pred             CCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE------e
Q psy682          134 NNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS------S  202 (330)
Q Consensus       134 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia------S  202 (330)
                      ...++|..+-+ .--|++++|.   +++.|-|+|.- +++|+.|.+.|+ +++...+.+... .|...+  |.      |
T Consensus       209 ~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~a-fatGSDD~tcRl-yDlRaD~~~a~y-s~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  209 KSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDA-FATGSDDATCRL-YDLRADQELAVY-SHDSIICGITSVAFSKS  284 (343)
T ss_pred             cceeeeeccCc-ceeEeecccccccceEEEccCCCe-eeecCCCceeEE-EeecCCcEEeee-ccCcccCCceeEEEccc
Confidence            55555544422 3458888886   78999999987 888999999999 999866655443 354443  21      2


Q ss_pred             -HHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          203 -ISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                       -++.   +|-.|.+|-+|+ ..|+-...|.||++  +|++|..||||.-|++|+ |.++++|.
T Consensus       285 GRlLf---agy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  285 GRLLF---AGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccEEE---eeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHheeecC
Confidence             3333   788999999995 59999999999999  999999999999999998 88888874

>KOG0319|consensus

Probab=99.88  E-value=7.7e-22  Score=201.07  Aligned_cols=269  Identities=18%  Similarity=0.216  Sum_probs=198.8

Q ss_pred             CcccCCCcEEEeecccccc-cceeecCCCceeEEEeCCCCCc-------------------------------------C
Q psy682            1 MSGGDKGIVEVWRTFNLAL-LYAFPSCDSSVRSLALSHDQKY-------------------------------------S   42 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~-l~tl~gH~~~V~svafSpdg~~-------------------------------------~   42 (330)
                      ++|+.|++||+||++++.. +.++.+|.+.|++++|++|+..                                     +
T Consensus       165 ~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~  244 (775)
T KOG0319|consen  165 ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE  244 (775)
T ss_pred             eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence            5789999999999997665 8899999999999999999876                                     0


Q ss_pred             -----ccee-----------------------------------------------------------------eeecCc
Q psy682           43 -----PMMF-----------------------------------------------------------------STVLDD   52 (330)
Q Consensus        43 -----~l~~-----------------------------------------------------------------~~~~~d   52 (330)
                           ...+                                                                 .-|-.|
T Consensus       245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd  324 (775)
T KOG0319|consen  245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND  324 (775)
T ss_pred             hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence                 0000                                                                 114444


Q ss_pred             cEEEEEeC-CCCCeeEeeeccc----------------------eecc--CCcEEEEEcCCcceEEEeCCCCCC-----c
Q psy682           53 VCMSLKFP-SNSPICHVTANTY----------------------VTLH--MPSVVTVTANHQFAINRWNPDYAA-----S  102 (330)
Q Consensus        53 ~~~~v~Fs-~~~~v~~~~~~~~----------------------~~~~--~~~~v~vS~~~~~tv~lW~~~~~~-----~  102 (330)
                      .|..++|- |+-..++|++|+.                      .+|.  ..+..+||+++|.+|.+|..+.+.     .
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~  404 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV  404 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence            45555554 5566666666654                      1333  677789999999999999774333     3


Q ss_pred             ccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCC--C--Cccce------eee---eeEEEEecCCCeE
Q psy682          103 IQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGD--N--FSQKL------RVR---HNCFVTTVDSRFL  167 (330)
Q Consensus       103 ~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~--~--~~~~~------~~~---~~~~~~spDg~~i  167 (330)
                      .+..||+.    .+.++.++.-+.  +++.|.+  -.+..|.+..  +  +.-.+      ..|   .||++++|+-+. 
T Consensus       405 a~~~gH~~----svgava~~~~~asffvsvS~D--~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL-  477 (775)
T KOG0319|consen  405 AQANGHTN----SVGAVAGSKLGASFFVSVSQD--CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL-  477 (775)
T ss_pred             hhhccccc----ccceeeecccCccEEEEecCC--ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce-
Confidence            34458985    455677777666  4443333  3344555544  1  10111      122   279999999987 


Q ss_pred             EEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCc
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPE  240 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~  240 (330)
                      +|+||.|++.|+ |+++.++++.+|.||...|    |+.  .+.+   ++|.|+|||||.. ++..++||+||+.  .|-
T Consensus       478 iAT~SqDktaKi-W~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la---T~SgD~TvKIW~is~fSClkT~eGH~~--aVl  551 (775)
T KOG0319|consen  478 IATGSQDKTAKI-WDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA---TCSGDKTVKIWSISTFSCLKTFEGHTS--AVL  551 (775)
T ss_pred             EEecccccceee-ecccCceEEEEeeCCccceEEEEeccccceeE---eccCCceEEEEEeccceeeeeecCccc--eeE
Confidence            888889999999 9999999999999999998    332  4556   8999999999976 7999999999999  999


Q ss_pred             EEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCc-ccccccc
Q psy682          241 SVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN-DNLQELI  282 (330)
Q Consensus       241 ~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~-~dVkELi  282 (330)
                      .+.|=.+|+.|+|+ ++|.+++|+++ +..+.++..| ++|..|.
T Consensus       552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS  596 (775)
T ss_pred             eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence            99999999999998 59999999875 5566777644 5577664

>KOG0319|consensus

Probab=99.86  E-value=1.4e-21  Score=199.27  Aligned_cols=211  Identities=13%  Similarity=0.110  Sum_probs=167.4

Q ss_pred             CcccCCCcEEEeecccccc----cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFNLAL----LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~----l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      ||||.|++|+||+++++..    +....||...|.+||+|--|..                                   
T Consensus       381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as-----------------------------------  425 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS-----------------------------------  425 (775)
T ss_pred             EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc-----------------------------------
Confidence            6899999999999966442    3335899999999999664444                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCC------cc----cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAA------SI----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD  145 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~------~~----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~  145 (330)
                           +.||++.|.|+|+|......      ..    +-.-|..    .+++++++|+-+ ++++|.+-+.++|.-.. .
T Consensus       426 -----ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK----dIN~Vaia~ndkLiAT~SqDktaKiW~le~-~  495 (775)
T KOG0319|consen  426 -----FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK----DINCVAIAPNDKLIATGSQDKTAKIWDLEQ-L  495 (775)
T ss_pred             -----EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc----cccceEecCCCceEEecccccceeeecccC-c
Confidence                 46999999999999986611      11    1135653    577899999999 77767776666664442 2


Q ss_pred             CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCc
Q psy682          146 NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSD  216 (330)
Q Consensus       146 ~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgt  216 (330)
                      .+.-++.+|.   .||.|+|..|. ++++|.|+|||+ |++++...++++.||...|    |+.  +-.+   |+..||-
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~-laT~SgD~TvKI-W~is~fSClkT~eGH~~aVlra~F~~~~~qli---S~~adGl  570 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQL-LATCSGDKTVKI-WSISTFSCLKTFEGHTSAVLRASFIRNGKQLI---SAGADGL  570 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccce-eEeccCCceEEE-EEeccceeeeeecCccceeEeeeeeeCCcEEE---eccCCCc
Confidence            2334566665   59999999987 566678999999 9999999999999999999    343  4444   9999999


Q ss_pred             EEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          217 VKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       217 vkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      +|||+. ++..+++|.+|.+  +|++++-+|.+..+++|+ ++.++.|-
T Consensus       571 iKlWnikt~eC~~tlD~H~D--rvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  571 IKLWNIKTNECEMTLDAHND--RVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEEEeccchhhhhhhhhccc--eeEEEeecCccceeEecCCCeEEEEee
Confidence            999987 7999999999999  999999999999999985 88888884

>KOG0273|consensus

Probab=99.86  E-value=5.6e-21  Score=187.18  Aligned_cols=240  Identities=16%  Similarity=0.175  Sum_probs=176.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+|+.||.+|+|+. +|.++.+|.-|.+.|.+|..+-+|.+                                       
T Consensus       251 atG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~y---------------------------------------  290 (524)
T KOG0273|consen  251 ATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTY---------------------------------------  290 (524)
T ss_pred             EEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCE---------------------------------------
Confidence            68999999999988 78999999999999999999999988                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee---e
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---N  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~  156 (330)
                        ++|++.|+|+-+||.-.+. ..++.=|+....+    +----+-..++++.++..-+.+.. .+....++.+|.   +
T Consensus       291 --ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD----VdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  291 --ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD----VDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVN  363 (524)
T ss_pred             --EEeccCCccEEEEeccCceEEEeeeeccCCccc----eEEecCceEeecCCCceEEEEEec-CCCcceeeecccCceE
Confidence              5899999999999986544 3344455433121    111111122321111111122222 122334566665   5


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-e------------HHHHHhhhccCCCcEEEEc
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-S------------ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-S------------t~~lW~~SgS~Dgtvkl~~  221 (330)
                      ++.+.|.|+. ++++|.|+|+|| |+...+..++.+.+|+.-|  |. |            +.++   ++|.|+|||+|+
T Consensus       364 alk~n~tg~L-LaS~SdD~Tlki-Ws~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~---sas~dstV~lwd  438 (524)
T KOG0273|consen  364 ALKWNPTGSL-LASCSDDGTLKI-WSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA---SASFDSTVKLWD  438 (524)
T ss_pred             EEEECCCCce-EEEecCCCeeEe-eecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE---EeecCCeEEEEE
Confidence            7888999988 555567999999 9988889999999999665  11 1            4444   899999999998


Q ss_pred             c-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe-eCCceeeeccCccccccccccccchhhhhcccCCC
Q psy682          222 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT-MNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGY  298 (330)
Q Consensus       222 ~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s-~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~  298 (330)
                      . .|..+.+|..|..  +|++|+|||+|..+|||+ ++.++.|+ +-|++..+....+-|.||.          -|.++-
T Consensus       439 v~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~----------Wn~~G~  506 (524)
T KOG0273|consen  439 VESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC----------WNAAGD  506 (524)
T ss_pred             ccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE----------EcCCCC
Confidence            6 7999999999999  999999999999999998 78889995 5677778887777666653          566655


Q ss_pred             cccccc
Q psy682          299 CLGKTE  304 (330)
Q Consensus       299 ~~g~~~  304 (330)
                      .++..+
T Consensus       507 kl~~~~  512 (524)
T KOG0273|consen  507 KLGACA  512 (524)
T ss_pred             EEEEEe
Confidence            555554

>KOG0281|consensus

Probab=99.85  E-value=1.7e-21  Score=185.48  Aligned_cols=207  Identities=13%  Similarity=0.184  Sum_probs=159.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +||..|+||++||.++-+-++.|.||++.|.++-|-.                                           
T Consensus       211 VSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-------------------------------------------  247 (499)
T KOG0281|consen  211 VSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-------------------------------------------  247 (499)
T ss_pred             hcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-------------------------------------------
Confidence            6899999999999999999999999999999988844                                           


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc----ceeeee
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ----KLRVRH  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~----~~~~~~  155 (330)
                      .+++|++.|-||++|+.++++ +.++.+|.+    .+..+.|+....+. +|-+-+  ...|.+..|-+.    -+.+|-
T Consensus       248 rviisGSSDsTvrvWDv~tge~l~tlihHce----aVLhlrf~ng~mvt-cSkDrs--iaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE----AVLHLRFSNGYMVT-CSKDRS--IAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             eEEEecCCCceEEEEeccCCchhhHHhhhcc----eeEEEEEeCCEEEE-ecCCce--eEEEeccCchHHHHHHHHhhhh
Confidence            247999999999999998777 666679985    66678887655443 233322  333443332211    123343


Q ss_pred             eEEE-EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-EEe---HHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682          156 NCFV-TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-FSS---ISLAWKNCQRDTSDVKVHTT-FGDLLRS  229 (330)
Q Consensus       156 ~~~~-~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-iaS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~t  229 (330)
                      .++. +--|.|| |+++|.|+|||+ |++.+++.++++.||...| .+-   ...+   |||.|.||+||+. .|.+||.
T Consensus       321 AaVNvVdfd~ky-IVsASgDRTikv-W~~st~efvRtl~gHkRGIAClQYr~rlvV---SGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  321 AAVNVVDFDDKY-IVSASGDRTIKV-WSTSTCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             hheeeeccccce-EEEecCCceEEE-EeccceeeehhhhcccccceehhccCeEEE---ecCCCceEEEEeccccHHHHH
Confidence            2222 3346788 666778999999 9999999999999998876 111   2222   9999999999986 6999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      |+||+.  -|++|.|  |.+.||||. +|++..|..+.
T Consensus       396 LeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  396 LEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             HhchHH--hhhheee--cCceeeeccccceEEEEeccc
Confidence            999999  9999999  567899997 99999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=6.9e-20  Score=161.85  Aligned_cols=234  Identities=18%  Similarity=0.208  Sum_probs=169.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      ++|+.||.|++|++.+++....+.+|...+..+.|+|+++.                  ........|...+..+.|+++
T Consensus        25 ~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  104 (289)
T cd00200          25 ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD  104 (289)
T ss_pred             EEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC
Confidence            46788999999999998889999999999999999999855                  011122344445566666666


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      +.+                 .++++.++.|++|+.. +........|.    ..+.++.|++++.+...+. .+..+..+
T Consensus       105 ~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-~~~~i~i~  162 (289)
T cd00200         105 GRI-----------------LSSSSRDKTIKVWDVETGKCLTTLRGHT----DWVNSVAFSPDGTFVASSS-QDGTIKLW  162 (289)
T ss_pred             CCE-----------------EEEecCCCeEEEEECCCcEEEEEeccCC----CcEEEEEEcCcCCEEEEEc-CCCcEEEE
Confidence            554                 4666778889999997 33344444665    3577899999988554222 12233344


Q ss_pred             ccC-CCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE----e--HHHHHhhhc
Q psy682          142 HLG-DNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS----S--ISLAWKNCQ  211 (330)
Q Consensus       142 ~l~-~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via----S--t~~lW~~Sg  211 (330)
                      .+. ......+..+.   .+++++|+++.+++++ .|+.+++ |++.+++++..+.+|.+.+..    .  .+.+   ++
T Consensus       163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~  237 (289)
T cd00200         163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKL-WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA---SG  237 (289)
T ss_pred             EccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEE-EECCCCceecchhhcCCceEEEEEcCCCcEEE---EE
Confidence            432 12223333332   5788999998877766 4999999 999889999888889877621    1  2222   77


Q ss_pred             cCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          212 RDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      +.||.|++|+. +++.+..+.+|..  .|.+++|+|+|+.|++++ ++.++.|.
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            78999999986 5899999999988  899999999999999885 77788773

>KOG0306|consensus

Probab=99.82  E-value=2.1e-20  Score=190.97  Aligned_cols=219  Identities=17%  Similarity=0.160  Sum_probs=149.4

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      |...|.+.+.++..+.++.+.++|.+.||+++.+||++-                                         
T Consensus       430 G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g-----------------------------------------  468 (888)
T KOG0306|consen  430 GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG-----------------------------------------  468 (888)
T ss_pred             eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc-----------------------------------------
Confidence            444455555555555555555555555555555555555                                         


Q ss_pred             EEEcCCcceEEEeCCCCCCc------ccC-CCCCC--CCCCCCCCccccCCCceec-cCCCCCCCcceeccCCCCcccee
Q psy682           83 TVTANHQFAINRWNPDYAAS------IQS-PSYAE--TPGSPPGNLPLTLDPILTH-PTSNNNAPVPKRHLGDNFSQKLR  152 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~------~~~-~~h~~--~~~~~~~~l~fs~D~~l~~-~s~~~~~~~~~~~l~~~~~~~~~  152 (330)
                      .|+++.|.|||.|+.....-      +-+ .-|+.  ...+.+.++++||||++++ +==+++.++.-...- .|--++.
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLY  547 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLY  547 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeec
Confidence            38888999999999742211      100 01110  1224677999999999553 112222221100000 0112345


Q ss_pred             eee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-HHHHHhhhccCCCcEEEEcc-c
Q psy682          153 VRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       153 ~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                      +|.   .|+.+|||++. +++||.|+++|+ |.++.|.+.+.+++|.|.|    |.+ +-..|  ++++||.||=|+. .
T Consensus       548 GHkLPV~smDIS~DSkl-ivTgSADKnVKi-WGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF--t~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKL-IVTGSADKNVKI-WGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF--TCGKDGKVKQWDGEK  623 (888)
T ss_pred             ccccceeEEeccCCcCe-EEeccCCCceEE-eccccchhhhhhhcccCceeEEEEcccceeEE--EecCcceEEeechhh
Confidence            554   58889999998 566779999999 9999999999999999998    334 33333  7899999999986 4


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCcee
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRL  269 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~l  269 (330)
                      =+.+++|.+|..  .|++++.+|+|.+++|++ |.+|.+|...-..|
T Consensus       624 Fe~iq~L~~H~~--ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  624 FEEIQKLDGHHS--EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             hhhheeeccchh--eeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            478999999999  999999999999999997 78999999876554

>KOG0266|consensus

Probab=99.82  E-value=1.5e-19  Score=181.99  Aligned_cols=199  Identities=14%  Similarity=0.146  Sum_probs=153.9

Q ss_pred             CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-
Q psy682           51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      ...+..++|++||..+                 ++++.++++++|+.....   ++.+.+|.    ..+..++|+||++ 
T Consensus       159 ~~sv~~~~fs~~g~~l-----------------~~~~~~~~i~~~~~~~~~~~~~~~l~~h~----~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRAL-----------------AAASSDGLIRIWKLEGIKSNLLRELSGHT----RGVSDVAFSPDGSY  217 (456)
T ss_pred             cCceEEEEEcCCCCeE-----------------EEccCCCcEEEeecccccchhhccccccc----cceeeeEECCCCcE
Confidence            4566678888888864                 888888889999995444   45556897    4677799999998 


Q ss_pred             eeccCCCCCCCcceeccCC--CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-
Q psy682          127 LTHPTSNNNAPVPKRHLGD--NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-  200 (330)
Q Consensus       127 l~~~s~~~~~~~~~~~l~~--~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-  200 (330)
                      +++  ++.+..++.|.+..  ...+++.+|.   .+++|+|+|+. +++|+.|++||+ |++.+|++...+.+|.+.|. 
T Consensus       218 l~s--~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~-i~Sgs~D~tvri-Wd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  218 LLS--GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNL-LVSGSDDGTVRI-WDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             EEE--ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCE-EEEecCCCcEEE-EeccCCeEEEeeeccCCceEE
Confidence            554  44444455555522  3446677775   58999999966 777889999999 99999999999999999983 


Q ss_pred             -E-e---HHHHHhhhccCCCcEEEEcc-cCc--eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceee
Q psy682          201 -S-S---ISLAWKNCQRDTSDVKVHTT-FGD--LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLR  270 (330)
Q Consensus       201 -a-S---t~~lW~~SgS~Dgtvkl~~~-~G~--ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~la  270 (330)
                       + +   ..++   ++|.||+|+||+. +|+  +++++.+++...+|+++.|||+|+.++++. ++.+.+|... |+.+.
T Consensus       294 ~~f~~d~~~l~---s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  294 LAFSPDGNLLV---SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             EEECCCCCEEE---EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence             2 1   3333   7899999999987 566  468999998822599999999999999996 6699999887 77777


Q ss_pred             eccCccc
Q psy682          271 HESHNDN  277 (330)
Q Consensus       271 s~~~~~d  277 (330)
                      ....+..
T Consensus       371 ~~~~~~~  377 (456)
T KOG0266|consen  371 TYTGHSN  377 (456)
T ss_pred             eecccCC
Confidence            7776543

>KOG0286|consensus

Probab=99.81  E-value=9e-19  Score=163.79  Aligned_cols=236  Identities=11%  Similarity=0.058  Sum_probs=183.9

Q ss_pred             ccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682           19 LLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ..++|+||.+.|.++.+++|.+.                  +-....+.....||..+|+|.|+.|              
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V--------------  112 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV--------------  112 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE--------------
Confidence            34789999999999999999888                  1123356778889999999999986              


Q ss_pred             EEEEEcCCcceEEEeCCCCC--C-----cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceee
Q psy682           81 VVTVTANHQFAINRWNPDYA--A-----SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV  153 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~--~-----~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~  153 (330)
                         |.++.|+..-+++....  +     .+.++||++    -..+-.|..|+++.++|++.+-.+|....+. ..+.+.+
T Consensus       113 ---AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg----ylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~G  184 (343)
T KOG0286|consen  113 ---ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG----YLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHG  184 (343)
T ss_pred             ---EecCcCceeEEEecccccccccceeeeeecCccc----eeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecC
Confidence               88888888888887533  1     456779984    3446889999999986666655566555333 2355666


Q ss_pred             ee---eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc-
Q psy682          154 RH---NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-  222 (330)
Q Consensus       154 ~~---~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-  222 (330)
                      |.   .++.++| |+++ +++|+.|++-|| |++..|...|+++||...|    |.+  ...+   +||+|+||++++. 
T Consensus       185 H~gDV~slsl~p~~~nt-FvSg~cD~~akl-WD~R~~~c~qtF~ghesDINsv~ffP~G~afa---tGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNT-FVSGGCDKSAKL-WDVRSGQCVQTFEGHESDINSVRFFPSGDAFA---TGSDDATCRLYDLR  259 (343)
T ss_pred             CcccEEEEecCCCCCCe-EEecccccceee-eeccCcceeEeecccccccceEEEccCCCeee---ecCCCceeEEEeec
Confidence            65   4778899 9998 666778999999 9999999999999999988    332  2222   8999999999976 


Q ss_pred             cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEE-eeCCceeeeccCc-cccccc
Q psy682          223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAF-TMNGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~-s~nG~~las~~~~-~dVkEL  281 (330)
                      .++.+..+.+......|++|+||--|++|..| ++.++..| ++.|+....+..| ++|.+|
T Consensus       260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL  321 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence            57888888865554689999999999999986 78888888 8999999888855 446554

>KOG0291|consensus

Probab=99.81  E-value=3.8e-19  Score=181.97  Aligned_cols=232  Identities=14%  Similarity=0.162  Sum_probs=179.3

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      +|=..|...|+++.+=.+++.|.--+..|..++|+..|..                   .-.+-+++|-+.+.++.+|||
T Consensus       282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD  361 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD  361 (893)
T ss_pred             EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence            4456788899999888889999888899999999988776                   112346699999999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      ||++                 ||+..|+.||+||.+.+- .-|+..|+    +.+..|.|+.++. +.++|=++++..|.
T Consensus       362 gq~i-----------------aTG~eDgKVKvWn~~SgfC~vTFteHt----s~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  362 GQLI-----------------ATGAEDGKVKVWNTQSGFCFVTFTEHT----SGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             CcEE-----------------EeccCCCcEEEEeccCceEEEEeccCC----CceEEEEEEecCCEEEEeecCCeEEeee
Confidence            9985                 999999999999997654 56667887    4677899999999 77766667666553


Q ss_pred             eccCCCCcccee----eeeeEEEEecCCCeEEEeeccC-CeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhh
Q psy682          141 RHLGDNFSQKLR----VRHNCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKN  209 (330)
Q Consensus       141 ~~l~~~~~~~~~----~~~~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~  209 (330)
                      .+-...| ++++    ..-.|+++-|-|..+.|++ -| --|.+ |++++|+++..|.||...|.    ..  ...+   
T Consensus       421 lkRYrNf-RTft~P~p~QfscvavD~sGelV~AG~-~d~F~Ifv-WS~qTGqllDiLsGHEgPVs~l~f~~~~~~La---  494 (893)
T KOG0291|consen  421 LKRYRNF-RTFTSPEPIQFSCVAVDPSGELVCAGA-QDSFEIFV-WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA---  494 (893)
T ss_pred             eccccee-eeecCCCceeeeEEEEcCCCCEEEeec-cceEEEEE-EEeecCeeeehhcCCCCcceeeEEccccCeEE---
Confidence            3322222 2232    2236888888898755544 34 34788 99999999999999999993    22  5555   


Q ss_pred             hccCCCcEEEEcccCc--eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEe
Q psy682          210 CQRDTSDVKVHTTFGD--LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT  263 (330)
Q Consensus       210 SgS~Dgtvkl~~~~G~--ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s  263 (330)
                      |||.|+|||+|+.-++  -..+|+..++   |..|+|+|||+-||.+ -+|.|-.|.
T Consensus       495 S~SWDkTVRiW~if~s~~~vEtl~i~sd---vl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSGTVETLEIRSD---VLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             eccccceEEEEEeeccCceeeeEeeccc---eeEEEEcCCCCeEEEEEecceEEEEE
Confidence            9999999999998554  6778876544   8999999999999998 477776664

>KOG0293|consensus

Probab=99.81  E-value=4.4e-19  Score=171.91  Aligned_cols=237  Identities=15%  Similarity=0.136  Sum_probs=172.7

Q ss_pred             CcccCCCcEEEeecccc---cccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEE
Q psy682            1 MSGGDKGIVEVWRTFNL---ALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLK   58 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g---~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~   58 (330)
                      |||+.|.|..+|++..-   ++.+||.||...|-.|+||||.++                   ...++..++...+-+.+
T Consensus       240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~  319 (519)
T KOG0293|consen  240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA  319 (519)
T ss_pred             eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence            79999999999997643   468999999999999999999998                   00112223334444455


Q ss_pred             eCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc
Q psy682           59 FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV  138 (330)
Q Consensus        59 Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~  138 (330)
                      .-|||.                 -.|+++.|+++-.|+.||..+..-.|-..   ..+..+++++||+.... .+.+...
T Consensus       320 W~pDg~-----------------~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~-v~~d~~i  378 (519)
T KOG0293|consen  320 WCPDGF-----------------RFVTGSPDRTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLL-VTVDKKI  378 (519)
T ss_pred             EccCCc-----------------eeEecCCCCcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEE-Eecccce
Confidence            555555                 46999999999999999987554443322   35778999999993321 1222222


Q ss_pred             ceeccCCCCcc-ceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--EEEe-------HHHH
Q psy682          139 PKRHLGDNFSQ-KLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--LFSS-------ISLA  206 (330)
Q Consensus       139 ~~~~l~~~~~~-~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--ViaS-------t~~l  206 (330)
                      ........... -...+  ..+|.+|-||+++++.= .+..+++ |+++..++++..+||.-.  +|-|       +.++
T Consensus       379 ~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL-~~qei~L-WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  379 RLYNREARVDRGLISEEQPITSFSISKDGKLALVNL-QDQEIHL-WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             eeechhhhhhhccccccCceeEEEEcCCCcEEEEEc-ccCeeEE-eecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence            22111111111 01111  24677999999988765 7999999 999999999999999875  3444       5556


Q ss_pred             HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEc-cCCeEEEEeeC
Q psy682          207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~-~~~~~~~~s~n  265 (330)
                         |||.|+.|.||.+ +|+++.+|.||..  .|++|+.+|.. ..+||| +|++++.|.+.
T Consensus       457 ---SGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  457 ---SGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ---ecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence               9999999999975 8999999999999  99999999975 467888 58899999864

>KOG0281|consensus

Probab=99.81  E-value=5.1e-20  Score=175.45  Aligned_cols=208  Identities=17%  Similarity=0.149  Sum_probs=158.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +|||.|.|||+||+++|+++.++-+|...|..+.||-.                                          
T Consensus       251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng------------------------------------------  288 (499)
T KOG0281|consen  251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG------------------------------------------  288 (499)
T ss_pred             EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC------------------------------------------
Confidence            58999999999999999999999999999999999762                                          


Q ss_pred             EEEEEcCCcceEEEeCCCCCCccc----CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeee
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQ----SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~----~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~  156 (330)
                       ..||+++|.+|..|+++.+.-.+    +.||..    .++.+.|+-- -+.+||++-+.++|.-. ...+-+++.+|..
T Consensus       289 -~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA----aVNvVdfd~k-yIVsASgDRTikvW~~s-t~efvRtl~gHkR  361 (499)
T KOG0281|consen  289 -YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDFDDK-YIVSASGDRTIKVWSTS-TCEFVRTLNGHKR  361 (499)
T ss_pred             -EEEEecCCceeEEEeccCchHHHHHHHHhhhhh----heeeeccccc-eEEEecCCceEEEEecc-ceeeehhhhcccc
Confidence             24899999999999998665333    349974    5666777543 35555555555555444 3456778888887


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEccc---------
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTF---------  223 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~---------  223 (330)
                      -+|.-...-.++++||+|+|||+ |+.+.|++++.|.||.+.|    |-..-++   ||..||+||+|+..         
T Consensus       362 GIAClQYr~rlvVSGSSDntIRl-wdi~~G~cLRvLeGHEeLvRciRFd~krIV---SGaYDGkikvWdl~aaldpra~~  437 (499)
T KOG0281|consen  362 GIACLQYRDRLVVSGSSDNTIRL-WDIECGACLRVLEGHEELVRCIRFDNKRIV---SGAYDGKIKVWDLQAALDPRAPA  437 (499)
T ss_pred             cceehhccCeEEEecCCCceEEE-EeccccHHHHHHhchHHhhhheeecCceee---eccccceEEEEecccccCCcccc
Confidence            66655443345889999999999 9999999999999999988    3332233   99999999999853         


Q ss_pred             Cc-eeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee
Q psy682          224 GD-LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM  264 (330)
Q Consensus       224 G~-ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~  264 (330)
                      +. .+++|..|++  +|..+.|- +=||++|.-+++|-.|..
T Consensus       438 ~~~Cl~~lv~hsg--RVFrLQFD-~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  438 STLCLRTLVEHSG--RVFRLQFD-EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             cchHHHhhhhccc--eeEEEeec-ceEEEeccCCCeEEEEEc
Confidence            22 4778888998  99999995 345555555777766653

>KOG0285|consensus

Probab=99.80  E-value=1.6e-19  Score=172.47  Aligned_cols=185  Identities=17%  Similarity=0.240  Sum_probs=153.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||+.|+||++||+.+|++..+|+||-..|+.||||+---+                                       
T Consensus       167 ~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpY---------------------------------------  207 (460)
T KOG0285|consen  167 ATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPY---------------------------------------  207 (460)
T ss_pred             EecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCce---------------------------------------
Confidence            68999999999999999999999999999999999984222                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                        .-|++.|+.||-|++.+..                                     .+|+--++++     ...|++.
T Consensus       208 --lFs~gedk~VKCwDLe~nk-------------------------------------vIR~YhGHlS-----~V~~L~l  243 (460)
T KOG0285|consen  208 --LFSAGEDKQVKCWDLEYNK-------------------------------------VIRHYHGHLS-----GVYCLDL  243 (460)
T ss_pred             --EEEecCCCeeEEEechhhh-------------------------------------hHHHhccccc-----eeEEEec
Confidence              3677888889999996652                                     3344344443     2367888


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e---HHHHHhhhccCCCcEEEEcc-cCceeeecCC
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP  232 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~  232 (330)
                      .|.-..|+ +|+.|.++|+ |++.+-.-+.++.||...|.  .  +   .+.    +||.|+||+||+. .|+-+.+|..
T Consensus       244 hPTldvl~-t~grDst~Rv-WDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi----t~S~D~tvrlWDl~agkt~~tlt~  317 (460)
T KOG0285|consen  244 HPTLDVLV-TGGRDSTIRV-WDIRTRASVHVLSGHTNPVASVMCQPTDPQVI----TGSHDSTVRLWDLRAGKTMITLTH  317 (460)
T ss_pred             cccceeEE-ecCCcceEEE-eeecccceEEEecCCCCcceeEEeecCCCceE----EecCCceEEEeeeccCceeEeeec
Confidence            88777744 5558999999 99988888999999999882  1  1   343    8999999999976 7999999999


Q ss_pred             CCCCCCCcEEEeCCCccEEEEccCCeEEEE-eeCCceeeeccCcc
Q psy682          233 PSGFASPESVVMSREGVIVVNYERGHIAAF-TMNGNRLRHESHND  276 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~-s~nG~~las~~~~~  276 (330)
                      |..  .|+++++.|.-...||++.+.+.-| -+.|..++.++.+.
T Consensus       318 hkk--svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  318 HKK--SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             ccc--eeeEEecCCchhhhhccCCccceeccCCccchhhcccccc
Confidence            988  9999999999999999999999888 47898888877664

>KOG0263|consensus

Probab=99.80  E-value=4.7e-19  Score=181.80  Aligned_cols=209  Identities=14%  Similarity=0.148  Sum_probs=151.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeE-----------EEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRS-----------LALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVT   69 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~s-----------vafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~   69 (330)
                      |.|=.|-.|++|.+.. +.++.+++-+....-           ...+.+   ......-||+..|+..+|+|+...+   
T Consensus       394 A~Gf~dS~i~~~Sl~p-~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVyg~sFsPd~rfL---  466 (707)
T KOG0263|consen  394 ACGFVDSSVRVWSLTP-KKLKKLKDASDLSNIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVYGCSFSPDRRFL---  466 (707)
T ss_pred             hccccccEEEEEecch-hhhccccchhhhccccccccchhhhhccccCC---ceeEEeecCCCceeeeeecccccce---
Confidence            4456788999999865 355566544333322           111111   1223466999999999999999975   


Q ss_pred             eccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc
Q psy682           70 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ  149 (330)
Q Consensus        70 ~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~  149 (330)
                                    +|++.|.+|+||..+...                        .+.         .-+    ++.. 
T Consensus       467 --------------lScSED~svRLWsl~t~s------------------------~~V---------~y~----GH~~-  494 (707)
T KOG0263|consen  467 --------------LSCSEDSSVRLWSLDTWS------------------------CLV---------IYK----GHLA-  494 (707)
T ss_pred             --------------eeccCCcceeeeecccce------------------------eEE---------Eec----CCCc-
Confidence                          999999999999996531                        011         001    1111 


Q ss_pred             ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc-
Q psy682          150 KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-  222 (330)
Q Consensus       150 ~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-  222 (330)
                        +  ..++.|+|-|-| +|+|+.|+|-|+ |+.+.-+..+.+.||...|    |.+  --.+   +||.|.||++|+. 
T Consensus       495 --P--VwdV~F~P~GyY-Fatas~D~tArL-Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~a---TGSsD~tVRlWDv~  565 (707)
T KOG0263|consen  495 --P--VWDVQFAPRGYY-FATASHDQTARL-WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVA---TGSSDRTVRLWDVS  565 (707)
T ss_pred             --c--eeeEEecCCceE-EEecCCCceeee-eecccCCchhhhcccccccceEEECCcccccc---cCCCCceEEEEEcC
Confidence              1  245668999988 777788999999 9999999999999999888    222  2233   8999999999976 


Q ss_pred             cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeE-----------------------EEEeeCCceeeeccCcccc
Q psy682          223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHI-----------------------AAFTMNGNRLRHESHNDNL  278 (330)
Q Consensus       223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~-----------------------~~~s~nG~~las~~~~~dV  278 (330)
                      +|.-+|-|.||.+  +|.+|+|||+|+.||||+ ++.|                       ..|+.+|..|++-..+..|
T Consensus       566 ~G~~VRiF~GH~~--~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  566 TGNSVRIFTGHKG--PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             CCcEEEEecCCCC--ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence            8999999999999  999999999999999996 5554                       4555666666666555554


Q ss_pred             c
Q psy682          279 Q  279 (330)
Q Consensus       279 k  279 (330)
                      +
T Consensus       644 ~  644 (707)
T KOG0263|consen  644 R  644 (707)
T ss_pred             E
Confidence            4

>KOG0276|consensus

Probab=99.80  E-value=6.7e-19  Score=177.31  Aligned_cols=192  Identities=15%  Similarity=0.179  Sum_probs=144.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      ++|++|..||+++.++++..++|.+|.+.|++|+..|.--.                   +..+++.||+--||+|+|.|
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP  150 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence            47999999999999999999999999999999999995433                   33466889999999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      +.+-.                .||++.|+|||+|+.-.+               ..+|++                  ..
T Consensus       151 kD~nt----------------FaS~sLDrTVKVWslgs~---------------~~nfTl------------------~g  181 (794)
T KOG0276|consen  151 KDPNT----------------FASASLDRTVKVWSLGSP---------------HPNFTL------------------EG  181 (794)
T ss_pred             CCccc----------------eeeeeccccEEEEEcCCC---------------CCceee------------------ec
Confidence            87753                599999999999999221               111111                  11


Q ss_pred             ccCCCCccceeeeeeEEEE--ecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-EE---e--HHHHHhhhccC
Q psy682          142 HLGDNFSQKLRVRHNCFVT--TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-FS---S--ISLAWKNCQRD  213 (330)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~--spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-ia---S--t~~lW~~SgS~  213 (330)
                      +..         ..||+.+  -+|-.||+ +|+-|.++|+ |+.++..++++|.||..-| ++   +  .+++   |||.
T Consensus       182 Hek---------GVN~Vdyy~~gdkpylI-sgaDD~tiKv-WDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii---sgsE  247 (794)
T KOG0276|consen  182 HEK---------GVNCVDYYTGGDKPYLI-SGADDLTIKV-WDYQTKSCVQTLEGHTNNVSFVFFHPELPIII---SGSE  247 (794)
T ss_pred             ccc---------CcceEEeccCCCcceEE-ecCCCceEEE-eecchHHHHHHhhcccccceEEEecCCCcEEE---EecC
Confidence            111         1256655  45667855 4668999999 9999999999999999987 32   2  4445   9999


Q ss_pred             CCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCC
Q psy682          214 TSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERG  257 (330)
Q Consensus       214 Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~  257 (330)
                      |||||||.. +=++-.+|.=--+  +|++|+--+.+..++.| +.+
T Consensus       248 DGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  248 DGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             CccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCC
Confidence            999999954 4555566654444  88888877766666665 444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.79  E-value=1e-18  Score=186.38  Aligned_cols=209  Identities=18%  Similarity=0.150  Sum_probs=146.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      |+|+.||+|+|||+.+++.+.++.+|.+.|++|+|+| ++.+                                      
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~--------------------------------------  590 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTL--------------------------------------  590 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCE--------------------------------------
Confidence            5789999999999999999999999999999999997 4444                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccc-cCCCc-eeccCCCCCCCcceeccCCC--Cccceeeee
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL-TLDPI-LTHPTSNNNAPVPKRHLGDN--FSQKLRVRH  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f-s~D~~-l~~~s~~~~~~~~~~~l~~~--~~~~~~~~~  155 (330)
                         ++|++.|++|++|+...........+.    ..+.++.| ++++. +++++.++.  +..|.+...  ...++..|.
T Consensus       591 ---L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----~~v~~v~~~~~~g~~latgs~dg~--I~iwD~~~~~~~~~~~~~h~  661 (793)
T PLN00181        591 ---LASGSDDGSVKLWSINQGVSIGTIKTK----ANICCVQFPSESGRSLAFGSADHK--VYYYDLRNPKLPLCTMIGHS  661 (793)
T ss_pred             ---EEEEcCCCEEEEEECCCCcEEEEEecC----CCeEEEEEeCCCCCEEEEEeCCCe--EEEEECCCCCccceEecCCC
Confidence               588999999999998755433222221    24667888 45677 665444443  334443221  112333332


Q ss_pred             ---eEEEEecCCCeEEEeeccCCeEEEeeeccc------ccccccccCCCCcE--E-Ee---HHHHHhhhccCCCcEEEE
Q psy682          156 ---NCFVTTVDSRFLLACGFWDNSFREPFTTMY------LALQEGKFDHPNRL--F-SS---ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       156 ---~~~~~spDg~~i~asg~~D~tirl~w~~~~------g~l~~~l~gH~d~V--i-aS---t~~lW~~SgS~Dgtvkl~  220 (330)
                         .++.|. |+.+|+ +|+.|++||+ |++..      ++++..+.||...+  + .+   ...+   +||.||+|+||
T Consensus       662 ~~V~~v~f~-~~~~lv-s~s~D~~iki-Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la---sgs~D~~v~iw  735 (793)
T PLN00181        662 KTVSYVRFV-DSSTLV-SSSTDNTLKL-WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA---TGSETNEVFVY  735 (793)
T ss_pred             CCEEEEEEe-CCCEEE-EEECCCEEEE-EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE---EEeCCCEEEEE
Confidence               466676 777844 5568999999 99863      35778899999876  1 11   3333   89999999999


Q ss_pred             ccc-Cceeee-------------cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682          221 TTF-GDLLRS-------------LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       221 ~~~-G~ll~t-------------L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~  264 (330)
                      +.. +..+.+             +..|..  .|++|+|+|+|..|++| ++|++..|.+
T Consensus       736 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        736 HKAFPMPVLSYKFKTIDPVSGLEVDDASQ--FISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ECCCCCceEEEecccCCcccccccCCCCc--EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            753 322211             122333  69999999999999998 4889998864

>KOG0645|consensus

Probab=99.78  E-value=1.2e-18  Score=161.49  Aligned_cols=194  Identities=12%  Similarity=0.122  Sum_probs=146.0

Q ss_pred             ccceeecCCCceeEEEeCCC-CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           19 LLYAFPSCDSSVRSLALSHD-QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpd-g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      ++++++||.+.||++|++|- |.                                         ++||++.|++|++|+.
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~-----------------------------------------ilAscg~Dk~vriw~~   44 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV-----------------------------------------ILASCGTDKAVRIWST   44 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce-----------------------------------------EEEeecCCceEEEEec
Confidence            45678899999999999884 22                                         3699999999999999


Q ss_pred             CCCC---cccCC--CCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC--ccceeeee---eEEEEecCCCe
Q psy682           98 DYAA---SIQSP--SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF--SQKLRVRH---NCFVTTVDSRF  166 (330)
Q Consensus        98 ~~~~---~~~~~--~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~--~~~~~~~~---~~~~~spDg~~  166 (330)
                      ..+.   .++..  +|.-    .+.+++++|.|+ ++++|.+.+..++... .+.|  ..++++|.   .|+++|++|.|
T Consensus        45 ~~~~s~~ck~vld~~hkr----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~sG~~  119 (312)
T KOG0645|consen   45 SSGDSWTCKTVLDDGHKR----SVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEGHENEVKCVAWSASGNY  119 (312)
T ss_pred             CCCCcEEEEEeccccchh----eeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeeccccceeEEEEcCCCCE
Confidence            7322   23222  7875    455799999999 7777777777666555 2222  34667776   49999999999


Q ss_pred             EEEeeccCCeEEEeeecccc---cccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEccc-C---ceeeecCCCCC
Q psy682          167 LLACGFWDNSFREPFTTMYL---ALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTF-G---DLLRSLDPPSG  235 (330)
Q Consensus       167 i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~-G---~ll~tL~~h~~  235 (330)
                       +|+.+.|+++=+ |..+.+   .....|.+|...|    ..+|.-|-- |+|.|.|||+|... +   .+..+|.+|++
T Consensus       120 -LATCSRDKSVWi-We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~  196 (312)
T KOG0645|consen  120 -LATCSRDKSVWI-WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHEN  196 (312)
T ss_pred             -EEEeeCCCeEEE-EEecCCCcEEEEeeeccccccccEEEEcCCcceeE-EeccCCeEEEEeecCCCCeeEEEEecCccc
Confidence             555569999999 998754   3678889998877    223222211 99999999999553 3   47999999999


Q ss_pred             CCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          236 FASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       236 ~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                        .|.+++|.|.|..|+|++ ++++..|-
T Consensus       197 --TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  197 --TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             --eEEEEEecCCCceEEEecCCcceEeee
Confidence              999999999999999996 55555554

>PTZ00421 coronin; Provisional

Probab=99.78  E-value=4.4e-18  Score=173.21  Aligned_cols=226  Identities=9%  Similarity=0.078  Sum_probs=145.4

Q ss_pred             eecCccEEEEEeCC-CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC--------CcccCCCCCCCCCCCCCC
Q psy682           48 TVLDDVCMSLKFPS-NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA--------ASIQSPSYAETPGSPPGN  118 (330)
Q Consensus        48 ~~~~d~~~~v~Fs~-~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--------~~~~~~~h~~~~~~~~~~  118 (330)
                      .+|.+.|+.++|+| |+.+                 +||++.|++|++|+....        .+..+.+|.    ..+.+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~-----------------LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~----~~V~~  130 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQK-----------------LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT----KKVGI  130 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCE-----------------EEEEeCCCEEEEEecCCCccccccCcceEEecCCC----CcEEE
Confidence            35555555555555 4554                 488899999999998643        234566887    46778


Q ss_pred             ccccCCC--ceeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          119 LPLTLDP--ILTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       119 l~fs~D~--~l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      +.|+|++  .+++++.++...  .|.+.. .....+..|.   .+++|+|||++ +++|+.|++||+ |++.+++.+..+
T Consensus       131 l~f~P~~~~iLaSgs~DgtVr--IWDl~tg~~~~~l~~h~~~V~sla~spdG~l-Latgs~Dg~IrI-wD~rsg~~v~tl  206 (493)
T PTZ00421        131 VSFHPSAMNVLASAGADMVVN--VWDVERGKAVEVIKCHSDQITSLEWNLDGSL-LCTTSKDKKLNI-IDPRDGTIVSSV  206 (493)
T ss_pred             EEeCcCCCCEEEEEeCCCEEE--EEECCCCeEEEEEcCCCCceEEEEEECCCCE-EEEecCCCEEEE-EECCCCcEEEEE
Confidence            9999986  366544444444  444322 1122333332   57889999998 556678999999 999999999899


Q ss_pred             cCCCCcE----EEe----HHHHHhhhccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEE
Q psy682          193 FDHPNRL----FSS----ISLAWKNCQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIA  260 (330)
Q Consensus       193 ~gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~  260 (330)
                      .+|...+    +..    .+..=-.+++.|++|+||+..  .+.+.++..+.. ..+....|++||.+|+.++  +++++
T Consensus       207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~-~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS-SALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC-CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            9997643    111    110000045679999999863  345555554433 2566778999999988874  88999


Q ss_pred             EEeeC-CceeeeccCccccccccccccchhhhhcccCCCccc
Q psy682          261 AFTMN-GNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLG  301 (330)
Q Consensus       261 ~~s~n-G~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g  301 (330)
                      .|.+. |+.+...+..  -.+-+..+..+|..-++.+..++.
T Consensus       286 iwdl~~~~~~~~~~~~--s~~~~~g~~~~pk~~~dv~~~Ei~  325 (493)
T PTZ00421        286 CFELMNERLTFCSSYS--SVEPHKGLCMMPKWSLDTRKCEIA  325 (493)
T ss_pred             EEEeeCCceEEEeecc--CCCCCcceEecccccccccceeee
Confidence            99765 5554443221  223344666667666666665544

>PTZ00420 coronin; Provisional

Probab=99.78  E-value=4.2e-18  Score=175.44  Aligned_cols=249  Identities=9%  Similarity=0.054  Sum_probs=163.5

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCC-CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD-QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd-g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      .|+.++.|+||+....+.+..|.+|.+.|++++|+|+ +++                                       
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~l---------------------------------------   89 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEI---------------------------------------   89 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCE---------------------------------------
Confidence            4778899999998777788889999999999999996 344                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC---------cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCC-ccc
Q psy682           81 VVTVTANHQFAINRWNPDYAA---------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQK  150 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~---------~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~-~~~  150 (330)
                        +||++.|++|++|+.....         +..+.+|.    ..+.++.|+|++....++++.+..+..|.+...- ...
T Consensus        90 --LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~----~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~  163 (568)
T PTZ00420         90 --LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK----KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ  163 (568)
T ss_pred             --EEEEeCCCeEEEEECCCCCccccccccceEEeecCC----CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence              5889999999999985321         12345786    4677899999987322223333334445443211 011


Q ss_pred             ee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---------e--HHHHHhhhccCC---
Q psy682          151 LR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---------S--ISLAWKNCQRDT---  214 (330)
Q Consensus       151 ~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---------S--t~~lW~~SgS~D---  214 (330)
                      +.  ....+++|+|||++ +++++.|++||+ |++.+++.++++.+|...+..         .  ..++   +++.|   
T Consensus       164 i~~~~~V~SlswspdG~l-Lat~s~D~~IrI-wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il---TtG~d~~~  238 (568)
T PTZ00420        164 INMPKKLSSLKWNIKGNL-LSGTCVGKHMHI-IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL---STGFSKNN  238 (568)
T ss_pred             EecCCcEEEEEECCCCCE-EEEEecCCEEEE-EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE---EEEcCCCC
Confidence            11  11357889999998 455668999999 999999999999999875411         1  1122   55544   


Q ss_pred             -CcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCccccccccccccchhh
Q psy682          215 -SDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPE  290 (330)
Q Consensus       215 -gtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~  290 (330)
                       ++|+||+..  ++.+.++..+.....+.....+++|+++++| ++++++.|......+..+..-. -.+-.-.+.++|.
T Consensus       239 ~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pk  317 (568)
T PTZ00420        239 MREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPK  317 (568)
T ss_pred             ccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccc
Confidence             489999864  6777776544432255566667889999999 6999999987543333322110 1111123445555


Q ss_pred             hhcccCCCccc
Q psy682          291 MLVNSNGYCLG  301 (330)
Q Consensus       291 ~l~n~~~~~~g  301 (330)
                      --++....++.
T Consensus       318 r~~dv~~cEi~  328 (568)
T PTZ00420        318 QICDVYKCEIG  328 (568)
T ss_pred             cccCchhhhHh
Confidence            55555544443

>KOG0316|consensus

Probab=99.78  E-value=2.5e-18  Score=157.15  Aligned_cols=226  Identities=13%  Similarity=0.086  Sum_probs=160.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---------------Cc---ceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---------------SP---MMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---------------~~---l~~~~~~~d~~~~v~Fs~~   62 (330)
                      ++++.|+||||||...|.+++|+.||...|.+++.+.|...               +.   ..-+.+|...|..|+|..+
T Consensus        33 ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee  112 (307)
T KOG0316|consen   33 LTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE  112 (307)
T ss_pred             EEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc
Confidence            36889999999999999999999999999999999999877               11   1225588889999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC--cccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcc
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP  139 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~  139 (330)
                      +.++                 +|++.|.++++|+.....  ..|.. .-    .+.+.++.++--- +...|.+++....
T Consensus       113 sSVv-----------------~SgsfD~s~r~wDCRS~s~ePiQildea----~D~V~Si~v~~he-IvaGS~DGtvRty  170 (307)
T KOG0316|consen  113 SSVV-----------------ASGSFDSSVRLWDCRSRSFEPIQILDEA----KDGVSSIDVAEHE-IVAGSVDGTVRTY  170 (307)
T ss_pred             ceEE-----------------EeccccceeEEEEcccCCCCccchhhhh----cCceeEEEecccE-EEeeccCCcEEEE
Confidence            8875                 999999999999984321  11111 11    1222222221111 2323444443333


Q ss_pred             eeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-----E--e-HHHHHhhhc
Q psy682          140 KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-----S--S-ISLAWKNCQ  211 (330)
Q Consensus       140 ~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-----a--S-t~~lW~~Sg  211 (330)
                      ..+.|..+..-+--..+|+.||+||+..+++ +-|.++|+ -+-++|||++...||.+.=+     .  | +..+   ||
T Consensus       171 diR~G~l~sDy~g~pit~vs~s~d~nc~La~-~l~stlrL-lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~---sg  245 (307)
T KOG0316|consen  171 DIRKGTLSSDYFGHPITSVSFSKDGNCSLAS-SLDSTLRL-LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF---SG  245 (307)
T ss_pred             EeecceeehhhcCCcceeEEecCCCCEEEEe-eccceeee-cccchhHHHHHhcccccceeeeeeeecccceeEE---ec
Confidence            3333443333222234799999999997775 58999999 99999999999999998651     1  2 4444   99


Q ss_pred             cCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          212 RDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      |+||.|-+|++ +++.+..|+.|+. ..|.+|++-|-=..+..+
T Consensus       246 SEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A  288 (307)
T KOG0316|consen  246 SEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA  288 (307)
T ss_pred             cCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence            99999999975 8999999998877 137888888764444433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.78  E-value=1.2e-17  Score=147.52  Aligned_cols=227  Identities=14%  Similarity=0.155  Sum_probs=159.9

Q ss_pred             cceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682           20 LYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +.+|++|.+.|.+++|+|+++.                  ........|...+..+.|+|++..                
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------   65 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----------------   65 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCE----------------
Confidence            4678899999999999999877                  011112234444445555555543                


Q ss_pred             EEEEcCCcceEEEeCCCCC-CcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CCCccceeee---ee
Q psy682           82 VTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQKLRVR---HN  156 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~~~~~~~~~---~~  156 (330)
                       .++++.++.|++|+.+.. ......+|.    ..+.++.+++++.+..+++ .+..+..+.+. ......+..+   ..
T Consensus        66 -l~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~  139 (289)
T cd00200          66 -LASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPDGRILSSSS-RDKTIKVWDVETGKCLTTLRGHTDWVN  139 (289)
T ss_pred             -EEEEcCCCeEEEEEcCcccceEEEeccC----CcEEEEEEcCCCCEEEEec-CCCeEEEEECCCcEEEEEeccCCCcEE
Confidence             477777899999999764 344455665    3577899999987554222 13334444442 1111222222   35


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRS  229 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~t  229 (330)
                      +++++|++++ +++++.|+.+++ |++.+++++..+..|.+.|  +  ..  ...+   .++.||.|++|+. .++.+..
T Consensus       140 ~~~~~~~~~~-l~~~~~~~~i~i-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         140 SVAFSPDGTF-VASSSQDGTIKL-WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL---SSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             EEEEcCcCCE-EEEEcCCCcEEE-EEccccccceeEecCccccceEEECCCcCEEE---EecCCCcEEEEECCCCceecc
Confidence            7889999887 555657999999 9998899999999998766  2  12  1222   5677999999976 5899999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      +.+|.+  .+.+++|+|++.++++++ ++.+..|..+ ++.+.....+
T Consensus       215 ~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         215 LRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             hhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            989988  899999999999999998 9999999987 6766666533

>KOG0274|consensus

Probab=99.78  E-value=5.1e-18  Score=173.99  Aligned_cols=251  Identities=16%  Similarity=0.231  Sum_probs=180.1

Q ss_pred             CcccCCCcEEEeecccccccce-eecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCCCCCeeEeee---cccee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA-FPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPSNSPICHVTA---NTYVT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t-l~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~~~~v~~~~~---~~~~~   75 (330)
                      ++|+.|++|++|+..+|+.+.+ |.||.+.||+++|..-+..    ..+|..| .+.... -..|+-+++--   ++..-
T Consensus       222 ~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~----lvsgS~D~t~rvWd-~~sg~C~~~l~gh~stv~~  296 (537)
T KOG0274|consen  222 KSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDK----LVSGSTDKTERVWD-CSTGECTHSLQGHTSSVRC  296 (537)
T ss_pred             EecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCE----EEEEecCCcEEeEe-cCCCcEEEEecCCCceEEE
Confidence            3688999999999999999999 9999999999999862222    3444433 233333 22233222221   11123


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeee
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR  154 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~  154 (330)
                      +......++++++|.+||.|+.+.+....+. ||.+    +++++.+. .+.+.+.++++..++|.-..+ .+..++++|
T Consensus       297 ~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~----~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH  370 (537)
T KOG0274|consen  297 LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG----PVNCVQLD-EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGH  370 (537)
T ss_pred             EEccCceEeeccCCceEEEEeccCcceEEEeccccc----cEEEEEec-CCEEEEEecCceEEEEEhhhc-eeeeeecCC
Confidence            4455566788999999999999977755555 5985    66678887 666777777777777766633 344667777


Q ss_pred             eeE-EEEecCC-CeEEEeeccCCeEEEeeecccc-cccccccCCCCcE--EEe--HHHHHhhhccCCCcEEEEcc-cCce
Q psy682          155 HNC-FVTTVDS-RFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPNRL--FSS--ISLAWKNCQRDTSDVKVHTT-FGDL  226 (330)
Q Consensus       155 ~~~-~~~spDg-~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d~V--iaS--t~~lW~~SgS~Dgtvkl~~~-~G~l  226 (330)
                      ... ..+..|+ +. +.+|+.|++||+ |+++++ +++.++.+|...|  +..  ...+   |++.||+||+|+. +|+.
T Consensus       371 ~~~V~sl~~~~~~~-~~Sgs~D~~Ikv-Wdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lv---s~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  371 TGRVYSLIVDSENR-LLSGSLDTTIKV-WDLRTKRKCIHTLQGHTSLVSSLLLRDNFLV---SSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             cceEEEEEecCcce-EEeeeeccceEe-ecCCchhhhhhhhcCCcccccccccccceeE---eccccccEEEeecccCce
Confidence            642 2245566 67 455668999999 999988 8999999999987  111  3333   9999999999975 7999


Q ss_pred             eeecCC-CCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceee
Q psy682          227 LRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLR  270 (330)
Q Consensus       227 l~tL~~-h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~la  270 (330)
                      ++++.+ |.+  .|..+++. +-.+++++.++++..|.+ +|+...
T Consensus       446 ~~~~~~~~~~--~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  446 LRTLEGRHVG--GVSALALG-KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             eeeeccCCcc--cEEEeecC-cceEEEEecCCeeEEEecccCchhh
Confidence            999999 556  88999888 556777778999999953 343333

>KOG0318|consensus

Probab=99.78  E-value=7.3e-18  Score=167.22  Aligned_cols=248  Identities=13%  Similarity=0.127  Sum_probs=167.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Ccceeee---ecCccEEEEEe
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFST---VLDDVCMSLKF   59 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~---~~~d~~~~v~F   59 (330)
                      ||||+|++|-+++=.-=+.-.++..|+..|++|.|||||..                  .-+..+.   +|...|+.+..
T Consensus       164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW  243 (603)
T KOG0318|consen  164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW  243 (603)
T ss_pred             EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence            68999999999954333455678999999999999999998                  1122233   78888999999


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCC--------CccccCCCceeccC
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPG--------NLPLTLDPILTHPT  131 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~--------~l~fs~D~~l~~~s  131 (330)
                      |||+.-+                 +|++.|+++|+|+.....+.+..-..+++.++..        -+++|.+|.+.-  
T Consensus       244 sPDs~~~-----------------~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~--  304 (603)
T KOG0318|consen  244 SPDSTQF-----------------LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY--  304 (603)
T ss_pred             CCCCceE-----------------EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE--
Confidence            9999864                 8888889999999976654443322222323211        234444444321  


Q ss_pred             CCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccc-cCCCCcE--EE----
Q psy682          132 SNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-FDHPNRL--FS----  201 (330)
Q Consensus       132 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-~gH~d~V--ia----  201 (330)
                             ....-.. ..+.+.+|.   .+..++||+++|+++ +.|+.|-- |+..+|.--+-. .+|...|  ++    
T Consensus       305 -------ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~Sg-syDG~I~~-W~~~~g~~~~~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  305 -------LNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSG-SYDGHINS-WDSGSGTSDRLAGKGHTNQIKGMAASES  374 (603)
T ss_pred             -------ecccCCC-hhheecccccceeEEEEcCCCCEEEee-ccCceEEE-EecCCccccccccccccceEEEEeecCC
Confidence                   1111122 223455554   478899999997765 56999998 999766432111 3455554  00    


Q ss_pred             ----e-----HHHHHhh---------------------------------------------------------------
Q psy682          202 ----S-----ISLAWKN---------------------------------------------------------------  209 (330)
Q Consensus       202 ----S-----t~~lW~~---------------------------------------------------------------  209 (330)
                          +     +++.-..                                                               
T Consensus       375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~  454 (603)
T KOG0318|consen  375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD  454 (603)
T ss_pred             CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence                0     1111000                                                               


Q ss_pred             -----hccCCCcEEEEcccCcee---eecCCCCCCCCCcEEEeCCCccEEEEccCCe-----------------------
Q psy682          210 -----CQRDTSDVKVHTTFGDLL---RSLDPPSGFASPESVVMSREGVIVVNYERGH-----------------------  258 (330)
Q Consensus       210 -----SgS~Dgtvkl~~~~G~ll---~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~-----------------------  258 (330)
                           =|..||.|.|+++.|.-+   ..+..|.+  .|+.|+|||||..||+++...                       
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a--~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak  532 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA--AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK  532 (603)
T ss_pred             CCEEEEecccceEEEEEecCCcccceeeeecccC--CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence                 578899999999987443   23667888  999999999999999985221                       


Q ss_pred             --EEEEeeCCceeeeccCccccc
Q psy682          259 --IAAFTMNGNRLRHESHNDNLQ  279 (330)
Q Consensus       259 --~~~~s~nG~~las~~~~~dVk  279 (330)
                        ...|+||.+++|+-.++..|.
T Consensus       533 I~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  533 INCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             EEEEEeCCCceEEEeccccceEE
Confidence              688999999999999887643

>KOG0313|consensus

Probab=99.77  E-value=5.4e-18  Score=162.86  Aligned_cols=232  Identities=15%  Similarity=0.171  Sum_probs=165.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEe-CCCCCcCccee-------------------------eeecCccE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLAL-SHDQKYSPMMF-------------------------STVLDDVC   54 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svaf-Spdg~~~~l~~-------------------------~~~~~d~~   54 (330)
                      .||+.||++|+|++ .|+..+++.||.+.|.+++. .++... .+..                         -.||.+.|
T Consensus       119 ltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~-~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V  196 (423)
T KOG0313|consen  119 LTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSS-CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV  196 (423)
T ss_pred             EEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCcc-ceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence            37999999999998 68999999999999997765 333221 1111                         12555555


Q ss_pred             EEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC--------------------------CCCcccCCCC
Q psy682           55 MSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD--------------------------YAASIQSPSY  108 (330)
Q Consensus        55 ~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~--------------------------~~~~~~~~~h  108 (330)
                      -+|.-.++|-                 ..+|++.|.++++|+..                          ...+.++.||
T Consensus       197 ~sVsv~~sgt-----------------r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  197 DSVSVDSSGT-----------------RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             eEEEecCCCC-----------------eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            5555555555                 46999999999999921                          1124455699


Q ss_pred             CCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee-eEEEEecCCCeEEEeeccCCeEEEeeecccc-
Q psy682          109 AETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH-NCFVTTVDSRFLLACGFWDNSFREPFTTMYL-  186 (330)
Q Consensus       109 ~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~spDg~~i~asg~~D~tirl~w~~~~g-  186 (330)
                      ++    +|-.+-|++...+.+++-+-+.+.|...+++.-.......+ +|+..+|..+. ++||+.|+-||| |+..++ 
T Consensus       260 t~----~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~L-l~~gssdr~irl-~DPR~~~  333 (423)
T KOG0313|consen  260 TE----PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKL-LASGSSDRHIRL-WDPRTGD  333 (423)
T ss_pred             cc----ceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccce-eeecCCCCceee-cCCCCCC
Confidence            86    55568887755566656666666666665554322222222 68999999877 788889999999 998664 


Q ss_pred             -c-ccccccCCCCcEEE---e----HHHHHhhhccCCCcEEEEccc-Cc-eeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          187 -A-LQEGKFDHPNRLFS---S----ISLAWKNCQRDTSDVKVHTTF-GD-LLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       187 -~-l~~~l~gH~d~Via---S----t~~lW~~SgS~Dgtvkl~~~~-G~-ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                       + ..+++.||.+.|-+   +    ...+   |||.|||||||+.+ -+ .|.+|.+|.+  .|.+|.++ +|..||||+
T Consensus       334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~---S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~-~~~~IvSGG  407 (423)
T KOG0313|consen  334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLV---SGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWN-EGGLIVSGG  407 (423)
T ss_pred             CceeEEeeecchhhhhheecCCCCceEEE---EEecCCeEEEEEeccCCCcceeeccCCc--eEEEEecc-CCceEEecc
Confidence             3 58899999997721   1    1222   99999999999863 34 8999999999  89999997 677888886


Q ss_pred             -CCeEEEEe
Q psy682          256 -RGHIAAFT  263 (330)
Q Consensus       256 -~~~~~~~s  263 (330)
                       |.+|..|.
T Consensus       408 aD~~l~i~~  416 (423)
T KOG0313|consen  408 ADNKLRIFK  416 (423)
T ss_pred             CcceEEEec
Confidence             77787775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.77  E-value=1.6e-17  Score=177.32  Aligned_cols=244  Identities=11%  Similarity=0.136  Sum_probs=164.0

Q ss_pred             CCcEEEeecccccccce-----eecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCC---C-----CCeeEeeec
Q psy682            6 KGIVEVWRTFNLALLYA-----FPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPS---N-----SPICHVTAN   71 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~t-----l~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~---~-----~~v~~~~~~   71 (330)
                      +|.+++|+..+.+....     +.+|...|++++|+|||++    +.++..| .|....+..   +     .+++.+...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~----latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~  532 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEF----FATAGVNKKIKIFECESIIKDGRDIHYPVVELASR  532 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCE----EEEEeCCCEEEEEECCcccccccccccceEEeccc
Confidence            67789998876443333     4569999999999999987    5444433 333333211   1     122211111


Q ss_pred             c---ceeccC-CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccC
Q psy682           72 T---YVTLHM-PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        72 ~---~~~~~~-~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~  144 (330)
                      .   .....+ ..-.+|+++.|++|++|+..... +.+..+|.    ..+.++.|+| |+. +++++.++...+|....+
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~  608 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQG  608 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence            1   112222 23457899999999999987544 55566887    4678899996 776 665444444444432222


Q ss_pred             CCCccceeee--eeEEEEe-cCCCeEEEeeccCCeEEEeeeccccc-ccccccCCCCcE----EEe-HHHHHhhhccCCC
Q psy682          145 DNFSQKLRVR--HNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLA-LQEGKFDHPNRL----FSS-ISLAWKNCQRDTS  215 (330)
Q Consensus       145 ~~~~~~~~~~--~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~-l~~~l~gH~d~V----iaS-t~~lW~~SgS~Dg  215 (330)
                      .. ..++..+  ..++.|+ ++|++ +++|+.|++|++ |++.+++ .+..+.+|...|    +.. ...+   +||.|+
T Consensus       609 ~~-~~~~~~~~~v~~v~~~~~~g~~-latgs~dg~I~i-wD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lv---s~s~D~  682 (793)
T PLN00181        609 VS-IGTIKTKANICCVQFPSESGRS-LAFGSADHKVYY-YDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV---SSSTDN  682 (793)
T ss_pred             cE-EEEEecCCCeEEEEEeCCCCCE-EEEEeCCCeEEE-EECCCCCccceEecCCCCCEEEEEEeCCCEEE---EEECCC
Confidence            21 1122222  2467774 56877 667779999999 9997765 567888999887    221 3333   899999


Q ss_pred             cEEEEccc-------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          216 DVKVHTTF-------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       216 tvkl~~~~-------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      +|+||+..       ++.+++|.+|..  .+..++|+|+|++||+|+ ++.+.+|..+
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            99999863       578999999998  899999999999999996 8889999865

>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

Probab=99.76  E-value=1.4e-19  Score=171.03  Aligned_cols=108  Identities=43%  Similarity=0.856  Sum_probs=92.5

Q ss_pred             ecCCCeEEEeeccCCe------EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCC
Q psy682          161 TVDSRFLLACGFWDNS------FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPP  233 (330)
Q Consensus       161 spDg~~i~asg~~D~t------irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h  233 (330)
                      ..+.++++.++++...      +|+ |+....-+++.+.+++.+++|.|.-..|.. .+.                    
T Consensus        83 ~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~-~~~--------------------  141 (275)
T cd06071          83 DSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRS-ASE--------------------  141 (275)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHH-HHc--------------------
Confidence            3455677888877754      588 999877889999999999999998888873 211                    


Q ss_pred             CCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCcee
Q psy682          234 SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVE  313 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~  313 (330)
                                                              ...+++|||||||++||||+|.|+++||+ ++|+.++||+
T Consensus       142 ----------------------------------------~~~d~~ELIPEFf~~Pe~f~N~n~~~lg~-~~g~~~~DV~  180 (275)
T cd06071         142 ----------------------------------------NPSDVKELIPEFYYLPEFFLNINKFDFGK-QDGEKVNDVE  180 (275)
T ss_pred             ----------------------------------------cCCCcccCCchHhcCHHHHhCCCcccccc-cCCCccccee
Confidence                                                    13579999999999999999999999999 9999999999


Q ss_pred             cCCCCCCHHHHHHHhcC
Q psy682          314 LPPWASSPEQFVRINRM  330 (330)
Q Consensus       314 LP~wa~s~~~fi~~~r~  330 (330)
                      ||+||++|++||++||+
T Consensus       181 LP~Wa~s~~~FV~~~R~  197 (275)
T cd06071         181 LPPWAKSPEEFIRKHRE  197 (275)
T ss_pred             cCCCcCCHHHHHHHHHH
Confidence            99999999999999994

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.

>KOG0316|consensus

Probab=99.76  E-value=3e-18  Score=156.59  Aligned_cols=204  Identities=15%  Similarity=0.143  Sum_probs=155.2

Q ss_pred             cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      +.+.++.+|++.|++|.|+-||++                                         ..+++.|+||||||+
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY-----------------------------------------~ltcGsdrtvrLWNp   46 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNY-----------------------------------------CLTCGSDRTVRLWNP   46 (307)
T ss_pred             hhceeecccccceEEEEEccCCCE-----------------------------------------EEEcCCCceEEeecc
Confidence            467788999999999999999998                                         489999999999998


Q ss_pred             CCC-CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeec
Q psy682           98 DYA-ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGF  172 (330)
Q Consensus        98 ~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~  172 (330)
                      -.+ .+++-.||...|.+    +..+.|.. ++++.++-....|....|. ..+++++|   .|.+.|..++.. +++|+
T Consensus        47 ~rg~liktYsghG~EVlD----~~~s~Dnskf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~aqVNtV~fNeesSV-v~Sgs  120 (307)
T KOG0316|consen   47 LRGALIKTYSGHGHEVLD----AALSSDNSKFASCGGDKAVQVWDVNTGK-VDRRFRGHLAQVNTVRFNEESSV-VASGS  120 (307)
T ss_pred             cccceeeeecCCCceeee----ccccccccccccCCCCceEEEEEcccCe-eeeecccccceeeEEEecCcceE-EEecc
Confidence            644 46666799865554    88888887 6653333333344333222 23444444   478999998866 77888


Q ss_pred             cCCeEEEeeecccc--cccccccCCCCcEE----EeHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeC
Q psy682          173 WDNSFREPFTTMYL--ALQEGKFDHPNRLF----SSISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMS  245 (330)
Q Consensus       173 ~D~tirl~w~~~~g--~l~~~l~gH~d~Vi----aSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS  245 (330)
                      .|.++|+ |+-...  +++|++..-.|.|.    +-..++   .||.|||++.++. .|++....-||    +|++|+||
T Consensus       121 fD~s~r~-wDCRS~s~ePiQildea~D~V~Si~v~~heIv---aGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s  192 (307)
T KOG0316|consen  121 FDSSVRL-WDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV---AGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFS  192 (307)
T ss_pred             ccceeEE-EEcccCCCCccchhhhhcCceeEEEecccEEE---eeccCCcEEEEEeecceeehhhcCC----cceeEEec
Confidence            9999999 998643  57999998888882    225555   8999999999964 79998887776    99999999


Q ss_pred             CCccEEEEcc-CCeEEEEe-eCCceeeeccCcc
Q psy682          246 REGVIVVNYE-RGHIAAFT-MNGNRLRHESHND  276 (330)
Q Consensus       246 ~dG~~l~s~~-~~~~~~~s-~nG~~las~~~~~  276 (330)
                      +||+++..++ +.++++-. -.|++|++-+.|.
T Consensus       193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk  225 (307)
T KOG0316|consen  193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK  225 (307)
T ss_pred             CCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence            9999988876 66777763 4588888877664

>KOG0295|consensus

Probab=99.76  E-value=3.9e-18  Score=163.11  Aligned_cols=185  Identities=12%  Similarity=0.171  Sum_probs=147.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +|++.|++||.|++++|..+.+|++|..||+.|+.+.||.+                                       
T Consensus       209 lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti---------------------------------------  249 (406)
T KOG0295|consen  209 LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI---------------------------------------  249 (406)
T ss_pred             eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE---------------------------------------
Confidence            58999999999999999999999999999999999999887                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  159 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~  159 (330)
                        +||++.|.++++|-......+. +.+|.-    ++.++++-|+-.+-.        ...+. +               
T Consensus       250 --~As~s~dqtl~vW~~~t~~~k~~lR~hEh----~vEci~wap~~~~~~--------i~~at-~---------------  299 (406)
T KOG0295|consen  250 --IASCSNDQTLRVWVVATKQCKAELREHEH----PVECIAWAPESSYPS--------ISEAT-G---------------  299 (406)
T ss_pred             --EEecCCCceEEEEEeccchhhhhhhcccc----ceEEEEecccccCcc--------hhhcc-C---------------
Confidence              6999999999999986654333 336652    445555555543221        00000 0               


Q ss_pred             Eec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682          160 TTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLD  231 (330)
Q Consensus       160 ~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~  231 (330)
                       +- .+++ +++|++|++||+ |++.+|+++-+|.||.+.|    |.+  .-++   |..+|+|+++|+. +++.++++.
T Consensus       300 -~~~~~~~-l~s~SrDktIk~-wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~---ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  300 -STNGGQV-LGSGSRDKTIKI-WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL---SCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             -CCCCccE-EEeecccceEEE-EeccCCeEEEEEecccceeeeeEEcCCCeEEE---EEecCCcEEEEEeccceeeeccC
Confidence             01 3455 888999999999 9999999999999999999    444  4444   8999999999987 699999999


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          232 PPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                      +|+.  -|+++.|--+--.+++|+ +.+...|
T Consensus       374 ah~h--fvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  374 AHEH--FVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             CCcc--eeEEEecCCCCceEEeccccceeeee
Confidence            9999  899999999988999997 6666655

>KOG0291|consensus

Probab=99.76  E-value=3.8e-17  Score=167.47  Aligned_cols=266  Identities=14%  Similarity=0.131  Sum_probs=175.5

Q ss_pred             CcccCCCcEEEeecccccc--cceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeC--C--------------
Q psy682            1 MSGGDKGIVEVWRTFNLAL--LYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFP--S--------------   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~--l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs--~--------------   61 (330)
                      ++||.|-++|||.++.-+-  ...|.||.+.|-+--|..|...    ..+ ..+..+..+.++  |              
T Consensus       161 ~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~----l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~  236 (893)
T KOG0291|consen  161 VTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLD----LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD  236 (893)
T ss_pred             EeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcce----EEEEecCceEEEEEecCCCcccccccccccccc
Confidence            4789999999999876454  5568999999999888886554    222 233334444444  1              


Q ss_pred             ------C-----CCeeEeee-------c----cceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682           62 ------N-----SPICHVTA-------N----TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL  119 (330)
Q Consensus        62 ------~-----~~v~~~~~-------~----~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l  119 (330)
                            +     .++.+.-.       +    +-..+++...++|++=..+...|.....-.+....+-++   .+...+
T Consensus       237 d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~  313 (893)
T KOG0291|consen  237 DEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTV  313 (893)
T ss_pred             cccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEE
Confidence                  0     01111111       0    002345555566665555555677765544444333321   245556


Q ss_pred             cccCCCc-eeccCCC-CCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC
Q psy682          120 PLTLDPI-LTHPTSN-NNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD  194 (330)
Q Consensus       120 ~fs~D~~-l~~~s~~-~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g  194 (330)
                      +|..-|- +|.+++. +.-.+|.|+. +.+--+.++|.   .|++.|||||+ +++|..|+.||+ |+...|-+.-++..
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq~-iaTG~eDgKVKv-Wn~~SgfC~vTFte  390 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQL-IATGAEDGKVKV-WNTQSGFCFVTFTE  390 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEeec-cceeeeccccccceeeEEECCCCcE-EEeccCCCcEEE-EeccCceEEEEecc
Confidence            6665566 4432211 1122456663 33333344554   68999999999 666778999999 99999999999999


Q ss_pred             CCCcE-----------EE--e---HHHHHhh------------------------------hccCCC-cEEEEcc-cCce
Q psy682          195 HPNRL-----------FS--S---ISLAWKN------------------------------CQRDTS-DVKVHTT-FGDL  226 (330)
Q Consensus       195 H~d~V-----------ia--S---t~~lW~~------------------------------SgS~Dg-tvkl~~~-~G~l  226 (330)
                      |...|           +.  |   ||++|++                              .|+.|. -|.+|.. +|++
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence            99988           11  2   8888877                              333333 3666865 7999


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe-----------------------EEEEeeCCceeeeccCcccc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE-RGH-----------------------IAAFTMNGNRLRHESHNDNL  278 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~-----------------------~~~~s~nG~~las~~~~~dV  278 (330)
                      |-.|.||++  +|.+++|+|+|..|||+| |.+                       -+.|+|+|+.||..+.++++
T Consensus       471 lDiLsGHEg--PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  471 LDILSGHEG--PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             eehhcCCCC--cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence            999999999  999999999999999997 555                       36777888888888877644

>KOG0265|consensus

Probab=99.75  E-value=1.9e-17  Score=155.27  Aligned_cols=218  Identities=11%  Similarity=0.082  Sum_probs=161.6

Q ss_pred             cccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      ..+..++||.+.|..+.|+|||..                   +..+...+|...||.+.|.+|+..|            
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i------------  105 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI------------  105 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEE------------
Confidence            345667999999999999999988                   2234456888889999999998875            


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-ee-ccCCCCCCCcceeccCCCCccce--ee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LT-HPTSNNNAPVPKRHLGDNFSQKL--RV  153 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~-~~s~~~~~~~~~~~l~~~~~~~~--~~  153 (330)
                           +|++.|++|..|+...+. .+...+|+.    -++.+.-+--|. |. +++.+++-+++..+..+ -.+++  +.
T Consensus       106 -----~S~gtDk~v~~wD~~tG~~~rk~k~h~~----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~ky  175 (338)
T KOG0265|consen  106 -----LSCGTDKTVRGWDAETGKRIRKHKGHTS----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENKY  175 (338)
T ss_pred             -----EEecCCceEEEEecccceeeehhccccc----eeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccccce
Confidence                 899999999999997554 666678974    444555444444 33 22222322333222111 11223  22


Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-----------Ee-----HHHHHhh--------
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-----------SS-----ISLAWKN--------  209 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-----------aS-----t~~lW~~--------  209 (330)
                      ...+|.|.-++..++++| -|+-||+ |++..+....++.||.|.|+           -|     |+++|+.        
T Consensus       176 qltAv~f~d~s~qv~sgg-Idn~ikv-Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGG-IDNDIKV-WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             eEEEEEecccccceeecc-ccCceee-eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            234667888887766655 7999999 99988899999999999992           11     8888877        


Q ss_pred             -----------------------------hccCCCcEEEEcccC-ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe
Q psy682          210 -----------------------------CQRDTSDVKVHTTFG-DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGH  258 (330)
Q Consensus       210 -----------------------------SgS~Dgtvkl~~~~G-~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~  258 (330)
                                                   .||.|+-|.+|+.++ +++..|.||.+  +|+.+.|.|.-.+|.|++ |++
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCce
Confidence                                         899999999999877 88999999999  999999999999999984 666


Q ss_pred             EEE
Q psy682          259 IAA  261 (330)
Q Consensus       259 ~~~  261 (330)
                      |.+
T Consensus       332 i~l  334 (338)
T KOG0265|consen  332 IYL  334 (338)
T ss_pred             eEe
Confidence            654

>KOG0300|consensus

Probab=99.74  E-value=2.4e-17  Score=155.91  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=152.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCc----------------------------
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDD----------------------------   52 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d----------------------------   52 (330)
                      .++|.|.|-+||.+..|+-|.++.||.+.|++|+|++.|.+    .+++..|                            
T Consensus       164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L----~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLL----LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             eecccccceeEEeeccccceeeecccccceeeEEeccccce----EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            37899999999999999999999999999999999998887    1111100                            


Q ss_pred             --------cEEEEEeCCCCCeeEeeeccce-----ecc----CCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCC
Q psy682           53 --------VCMSLKFPSNSPICHVTANTYV-----TLH----MPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGS  114 (330)
Q Consensus        53 --------~~~~v~Fs~~~~v~~~~~~~~~-----~~~----~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~  114 (330)
                              .-..-.-.+||+.|-+.-+...     -..    ..+...|+++.|.|.++|+...+++.... ||..    
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~----  315 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS----  315 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch----
Confidence                    1122223456666555433331     000    12334688999999999999776544432 4531    


Q ss_pred             CCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-cccccccc
Q psy682          115 PPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKF  193 (330)
Q Consensus       115 ~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~  193 (330)
                                                 .|           ..| ...|..+. +.+++.|.|+|+ |+... ..-+..+.
T Consensus       316 ---------------------------EL-----------tHc-stHptQrL-VvTsSrDtTFRL-WDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  316 ---------------------------EL-----------THC-STHPTQRL-VVTSSRDTTFRL-WDFREAIQSVAVFQ  354 (481)
T ss_pred             ---------------------------hc-----------ccc-ccCCcceE-EEEeccCceeEe-ccchhhcceeeeec
Confidence                                       00           012 24566655 677789999999 99853 23477889


Q ss_pred             CCCCcEE----Ee-HHHHHhhhccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682          194 DHPNRLF----SS-ISLAWKNCQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       194 gH~d~Vi----aS-t~~lW~~SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n  265 (330)
                      ||.|.|-    .. --.+   |||+|.|||+|++.  -..|.|++--   .+++-|+.|--+.+||-- +...+.+|.+|
T Consensus       355 GHtdtVTS~vF~~dd~vV---SgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDDRVV---SGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ccccceeEEEEecCCcee---ecCCCceEEEeeeccccCcceeeecC---CccceeEeecCCceEEeccCCceEEEEecC
Confidence            9999983    22 1112   99999999999864  3456666642   379999999988888887 78889999999


Q ss_pred             Cceeeecc
Q psy682          266 GNRLRHES  273 (330)
Q Consensus       266 G~~las~~  273 (330)
                      |..|+-+.
T Consensus       429 G~RlaRlP  436 (481)
T KOG0300|consen  429 GNRLARLP  436 (481)
T ss_pred             CCccccCC
Confidence            99998664

>KOG0645|consensus

Probab=99.74  E-value=8.1e-17  Score=149.48  Aligned_cols=229  Identities=14%  Similarity=0.093  Sum_probs=166.7

Q ss_pred             CcccCCCcEEEeeccccccccee-----ecCCCceeEEEeCCCCCc--------------------CcceeeeecCccEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF-----PSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl-----~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d~~~   55 (330)
                      ||+|.|+.||+|+...+. -.+|     .+|...|++||+||.|++                    .-..++.||+..|-
T Consensus        31 Ascg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK  109 (312)
T KOG0645|consen   31 ASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK  109 (312)
T ss_pred             EeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee
Confidence            689999999999986432 2333     589999999999999998                    11233569999999


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHP  130 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~  130 (330)
                      +|+||++|..+                 |++++|+.|=+|..+.+.    ..-+.+|+.    -++-+.+.|-.- |+++
T Consensus       110 ~Vaws~sG~~L-----------------ATCSRDKSVWiWe~deddEfec~aVL~~Htq----DVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen  110 CVAWSASGNYL-----------------ATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ----DVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             EEEEcCCCCEE-----------------EEeeCCCeEEEEEecCCCcEEEEeeeccccc----cccEEEEcCCcceeEEe
Confidence            99999999975                 999999999999998333    445568885    467799999655 8888


Q ss_pred             CCCCCCCcceeccCCC--Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC-CCCcEE-Ee-
Q psy682          131 TSNNNAPVPKRHLGDN--FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRLF-SS-  202 (330)
Q Consensus       131 s~~~~~~~~~~~l~~~--~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~Vi-aS-  202 (330)
                      |++++.+.++....+.  .-+++.+|.   .+++|.+.|.. ++|++-|+++|| |...+     .+.+ |+..+. ++ 
T Consensus       169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~I-w~~~~-----~~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSI-WRLYT-----DLSGMHSRALYDVPW  241 (312)
T ss_pred             ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce-EEEecCCcceEe-eeecc-----CcchhcccceEeeee
Confidence            9999888877664332  235666665   48889999988 666779999999 98542     1222 222221 11 


Q ss_pred             --HHHHHhhhccCCCcEEEEccc----C---ceeee-cCCCCCCCCCcEEEeCCC-ccEEEEc-cCCeEEEEe
Q psy682          203 --ISLAWKNCQRDTSDVKVHTTF----G---DLLRS-LDPPSGFASPESVVMSRE-GVIVVNY-ERGHIAAFT  263 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~~----G---~ll~t-L~~h~~~~~v~~v~fS~d-G~~l~s~-~~~~~~~~s  263 (330)
                        -++.   ||..|+.|+|+-..    +   +++.. =..|+.  .|++|+..|. ..+|+|+ ++|.+..|.
T Consensus       242 ~~~~Ia---S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~--dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  242 DNGVIA---SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV--DVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             cccceE---eccCCCEEEEEEecCCCCCchHHHHHhhhccccc--ccceEEEcCCCCCceeecCCCceEEEEE
Confidence              1223   88899999998542    1   12222 234766  8999999994 6677777 588888886

>KOG0301|consensus

Probab=99.74  E-value=1.9e-17  Score=168.42  Aligned_cols=216  Identities=13%  Similarity=0.153  Sum_probs=161.8

Q ss_pred             CcccCCCcEEEeecccccccc--eeecCCCceeE-EEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFNLALLY--AFPSCDSSVRS-LALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~--tl~gH~~~V~s-vafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      ++||.||++|+|.-..++.+.  .+.+|.++|.. +++-+-                                       
T Consensus        29 ~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---------------------------------------   69 (745)
T KOG0301|consen   29 ISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---------------------------------------   69 (745)
T ss_pred             eecCCCCceeeeeccCcccccceecccCcceeeccceeccc---------------------------------------
Confidence            478999999999876655544  47888888866 666441                                       


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee-
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH-  155 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~-  155 (330)
                       +...++.++.|.+|.+|.+.+.... ++.||...    +-+++.-.|+.+.+  ++=+.....|..++ +...+++|. 
T Consensus        70 -~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn----VC~ls~~~~~~~iS--gSWD~TakvW~~~~-l~~~l~gH~a  141 (745)
T KOG0301|consen   70 -DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN----VCSLSIGEDGTLIS--GSWDSTAKVWRIGE-LVYSLQGHTA  141 (745)
T ss_pred             -cCcceEeecccceEEEEecCCCCchhhhhccccc----eeeeecCCcCceEe--cccccceEEecchh-hhcccCCcch
Confidence             1112588999999999999877744 45599864    44699889998775  33333445666544 445577775 


Q ss_pred             --eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-HHHHHhhhccCCCcEEEEcccCceee
Q psy682          156 --NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-ISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                        .++++=|+++  +.+|+.|++||+ |.-  |++++++.||.|.|    +.+ .-.+   |+|.||.||+|+.+|+.|+
T Consensus       142 sVWAv~~l~e~~--~vTgsaDKtIkl-Wk~--~~~l~tf~gHtD~VRgL~vl~~~~fl---ScsNDg~Ir~w~~~ge~l~  213 (745)
T KOG0301|consen  142 SVWAVASLPENT--YVTGSADKTIKL-WKG--GTLLKTFSGHTDCVRGLAVLDDSHFL---SCSNDGSIRLWDLDGEVLL  213 (745)
T ss_pred             heeeeeecCCCc--EEeccCcceeee-ccC--CchhhhhccchhheeeeEEecCCCeE---eecCCceEEEEeccCceee
Confidence              4677778884  567889999999 996  89999999999999    223 2333   9999999999999999999


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccC
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESH  274 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~  274 (330)
                      .+.||++  -|++++...+++.+||. .|++++.|..+ ...++..+
T Consensus       214 ~~~ghtn--~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~l  257 (745)
T KOG0301|consen  214 EMHGHTN--FVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITL  257 (745)
T ss_pred             eeeccce--EEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEec
Confidence            9999999  89999977777777776 58888888765 44444443

>KOG0301|consensus

Probab=99.74  E-value=1.9e-17  Score=168.35  Aligned_cols=212  Identities=16%  Similarity=0.212  Sum_probs=170.7

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +|+.|.+|.+|.+.+..++.+|+||+.-|.+++.--++.+                                        
T Consensus        76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~----------------------------------------  115 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTL----------------------------------------  115 (745)
T ss_pred             eecccceEEEEecCCCCchhhhhccccceeeeecCCcCce----------------------------------------
Confidence            5899999999999999999999999999999998776554                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeee---EE
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN---CF  158 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~---~~  158 (330)
                        +|++.|.|+++|.. +.....++||+.    .+..+.+=|+.++.++|++-+.+  .|+ ++...+++.+|..   .+
T Consensus       116 --iSgSWD~TakvW~~-~~l~~~l~gH~a----sVWAv~~l~e~~~vTgsaDKtIk--lWk-~~~~l~tf~gHtD~VRgL  185 (745)
T KOG0301|consen  116 --ISGSWDSTAKVWRI-GELVYSLQGHTA----SVWAVASLPENTYVTGSADKTIK--LWK-GGTLLKTFSGHTDCVRGL  185 (745)
T ss_pred             --EecccccceEEecc-hhhhcccCCcch----heeeeeecCCCcEEeccCcceee--ecc-CCchhhhhccchhheeee
Confidence              78888888888887 445555778874    56677777777877644444333  444 4556677888764   45


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--Ee----HHHHHhhhccCCCcEEEEcccCceeeecCC
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--SS----ISLAWKNCQRDTSDVKVHTTFGDLLRSLDP  232 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--aS----t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~  232 (330)
                      ++-+++.+ ++|+ -|+.||+ |++ +|..+....||...|.  ..    ..++   |.+.|+|++||... .+.+.++.
T Consensus       186 ~vl~~~~f-lScs-NDg~Ir~-w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv---s~gEDrtlriW~~~-e~~q~I~l  257 (745)
T KOG0301|consen  186 AVLDDSHF-LSCS-NDGSIRL-WDL-DGEVLLEMHGHTNFVYSISMALSDGLIV---STGEDRTLRIWKKD-ECVQVITL  257 (745)
T ss_pred             EEecCCCe-Eeec-CCceEEE-Eec-cCceeeeeeccceEEEEEEecCCCCeEE---EecCCceEEEeecC-ceEEEEec
Confidence            67888766 7877 6999999 999 6999999999999983  31    4444   99999999999876 89999998


Q ss_pred             CCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682          233 PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~  273 (330)
                      |.-  .++++++-+.|-|++-+|||.++.||.+-...|+.+
T Consensus       258 Ptt--siWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~e  296 (745)
T KOG0301|consen  258 PTT--SIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDE  296 (745)
T ss_pred             Ccc--ceEEEEEeeCCCEEEeccCceEEEEEecccccCCHH
Confidence            887  899999999999999999999999998866665543

>KOG0296|consensus

Probab=99.73  E-value=1.1e-16  Score=153.26  Aligned_cols=245  Identities=14%  Similarity=0.150  Sum_probs=169.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCCCCCeeEee--eccc--ee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPSNSPICHVT--ANTY--VT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~~~~v~~~~--~~~~--~~   75 (330)
                      |||+.|..--||+..+|+.+..+.||.+.|.+++||.||.+    ..+|.-+ .++..+-+......-+.  .+..  ..
T Consensus        80 aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl----LATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   80 ATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL----LATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             EecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE----EEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            68999999999999999999999999999999999999999    4443322 34444444433333221  1111  12


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV  153 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~  153 (330)
                      -++-+.+++.++.|+.+-.|+.+. ...+...||+    .+..+=-|.|||+ +.+...+++..+|.-..+.|+.   .+
T Consensus       156 WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~----~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~---~~  228 (399)
T KOG0296|consen  156 WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN----SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH---KI  228 (399)
T ss_pred             ecccccEEEeecCCCcEEEEECCCcceeeEecCCC----CCcccccccCCCceEEEEecCceEEEEecCCCceeE---Ee
Confidence            334555678899999999999876 5577778997    4677788999999 6655555555455444344321   11


Q ss_pred             e------eeEEEEecCCC----------------------------------------------------eEEEeeccCC
Q psy682          154 R------HNCFVTTVDSR----------------------------------------------------FLLACGFWDN  175 (330)
Q Consensus       154 ~------~~~~~~spDg~----------------------------------------------------~i~asg~~D~  175 (330)
                      .      ..|+.++.++.                                                    -|+||||-|+
T Consensus       229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG  308 (399)
T KOG0296|consen  229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG  308 (399)
T ss_pred             cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence            1      01111111111                                                    2477788888


Q ss_pred             eEEEeeecccccccccccCCCCcEE-----EeHHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCcc
Q psy682          176 SFREPFTTMYLALQEGKFDHPNRLF-----SSISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGV  249 (330)
Q Consensus       176 tirl~w~~~~g~l~~~l~gH~d~Vi-----aSt~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~  249 (330)
                      +|-| |++...++ +.++-|.+.|+     .+-..+   .++.||+|++|+ ++|+++.++.||..  .|..++++||++
T Consensus       309 ~i~i-yD~a~~~~-R~~c~he~~V~~l~w~~t~~l~---t~c~~g~v~~wDaRtG~l~~~y~GH~~--~Il~f~ls~~~~  381 (399)
T KOG0296|consen  309 TIAI-YDLAASTL-RHICEHEDGVTKLKWLNTDYLL---TACANGKVRQWDARTGQLKFTYTGHQM--GILDFALSPQKR  381 (399)
T ss_pred             eEEE-Eecccchh-heeccCCCceEEEEEcCcchhe---eeccCceEEeeeccccceEEEEecCch--heeEEEEcCCCc
Confidence            8887 88864443 45667777773     222222   799999999997 58999999999999  999999999999


Q ss_pred             EEEEcc-CCeEEEEe
Q psy682          250 IVVNYE-RGHIAAFT  263 (330)
Q Consensus       250 ~l~s~~-~~~~~~~s  263 (330)
                      .++++| +++...|-
T Consensus       382 ~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  382 LVVTVSDDNTALVFE  396 (399)
T ss_pred             EEEEecCCCeEEEEe
Confidence            999996 55565553

>KOG0318|consensus

Probab=99.73  E-value=1.2e-16  Score=158.71  Aligned_cols=237  Identities=14%  Similarity=0.140  Sum_probs=177.4

Q ss_pred             CcccCCCcEEEeeccc-cccc-ceeecCCCceeEEEeCCCCCc--------------------CcceeeeecCccEEEEE
Q psy682            1 MSGGDKGIVEVWRTFN-LALL-YAFPSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDDVCMSLK   58 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l-~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d~~~~v~   58 (330)
                      |||+..|+||+|+-.+ ...| ..|+--.+.|-++++++|++.                    +++-.++||...+.++.
T Consensus        75 ASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~  154 (603)
T KOG0318|consen   75 ASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVD  154 (603)
T ss_pred             eecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeee
Confidence            6899999999999765 3333 348888999999999999998                    44455789999999999


Q ss_pred             eCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC-CCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCC
Q psy682           59 FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP-DYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNA  136 (330)
Q Consensus        59 Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~  136 (330)
                      |-|--|.                .+||++.|++|....- ...-..+...|+    .=++++.|+|||. .+++++++..
T Consensus       155 ~KpsRPf----------------Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hs----kFV~~VRysPDG~~Fat~gsDgki  214 (603)
T KOG0318|consen  155 FKPSRPF----------------RIATGSDDNTVAFFEGPPFKFKSSFREHS----KFVNCVRYSPDGSRFATAGSDGKI  214 (603)
T ss_pred             ccCCCce----------------EEEeccCCCeEEEeeCCCeeeeecccccc----cceeeEEECCCCCeEEEecCCccE
Confidence            9999997                6899999999999884 344455666787    3677899999999 5554443322


Q ss_pred             CcceeccCCCC-----ccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEeHHHHHh
Q psy682          137 PVPKRHLGDNF-----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSSISLAWK  208 (330)
Q Consensus       137 ~~~~~~l~~~~-----~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaSt~~lW~  208 (330)
                      -+.....++..     ...-++...+++.+||++.++ +.+.|+|+|+ |++.+.++++++.--.. |   .+.  .+|.
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KI-WdVs~~slv~t~~~~~~-v~dqqvG--~lWq  289 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKI-WDVSTNSLVSTWPMGST-VEDQQVG--CLWQ  289 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEE-EEeeccceEEEeecCCc-hhceEEE--EEEe
Confidence            22222222211     111223335677899999955 5568999999 99999998887743332 2   111  1222


Q ss_pred             h----hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          209 N----CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       209 ~----SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      .    +-|.+|++-+.+. ++..++++.||..  .|.+++.||||++|.||+ +|.+..|..
T Consensus       290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCceEEEEec
Confidence            2    7788999999876 6889999999999  999999999999999998 899988864

>KOG0265|consensus

Probab=99.73  E-value=2.4e-17  Score=154.61  Aligned_cols=235  Identities=15%  Similarity=0.091  Sum_probs=148.7

Q ss_pred             CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCc
Q psy682           42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNL  119 (330)
Q Consensus        42 ~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l  119 (330)
                      +|+|..++|+..|+.++|+|+|+.+                 ||++.|..|-|||..+..  -..+.||++-|++    +
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~-----------------aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~----l   96 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCF-----------------ASGGSDRAIVLWNVYGDCENFWVLKGHSGAVME----L   96 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeE-----------------eecCCcceEEEEeccccccceeeeccccceeEe----e
Confidence            7788899999999999999999974                 999999999999985543  2233366643333    6


Q ss_pred             cccCCCc-eeccCCCCCCCcceeccCCCCccceeeeeeEEEEec---CCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682          120 PLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV---DSRFLLACGFWDNSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       120 ~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~sp---Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH  195 (330)
                      .++.|+. +.+++.+-....|.-+.+. -..+.++|..|+..-+   =|..++.+|+-|+|+|| |+..+...++++..-
T Consensus        97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl-~D~R~k~~~~t~~~k  174 (338)
T KOG0265|consen   97 HGMRDGSHILSCGTDKTVRGWDAETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKL-WDIRKKEAIKTFENK  174 (338)
T ss_pred             eeccCCCEEEEecCCceEEEEecccce-eeehhccccceeeecCccccCCeEEEecCCCceEEE-Eeecccchhhccccc
Confidence            6666665 4432222222222222211 1223444445544311   24445566666666666 665433333333221


Q ss_pred             CCcE---E--EeHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe----------
Q psy682          196 PNRL---F--SSISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGH----------  258 (330)
Q Consensus       196 ~d~V---i--aSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~----------  258 (330)
                      -..-   +  .+.-.+   ||..|+.||+|+. +++.+++|+||.+  +|..++.||+|..+.+-+ +.+          
T Consensus       175 yqltAv~f~d~s~qv~---sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVI---SGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             eeEEEEEeccccccee---eccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccC
Confidence            1110   1  111111   9999999999975 7899999999999  999999999999988753 221          


Q ss_pred             ---------------------EEEEeeCCceeeeccCcccccccc----ccccchhhhhcccCCCcccccc
Q psy682          259 ---------------------IAAFTMNGNRLRHESHNDNLQELI----PELFFLPEMLVNSNGYCLGKTE  304 (330)
Q Consensus       259 ---------------------~~~~s~nG~~las~~~~~dVkELi----pef~~~p~~l~n~~~~~~g~~~  304 (330)
                                           -+.|++|++.+..-..+..+.-+-    --+|.+|-..-..|+.+|=.++
T Consensus       250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE  320 (338)
T ss_pred             CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence                                 378889988887766555443221    2356778888888887776554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.72  E-value=6e-16  Score=141.93  Aligned_cols=258  Identities=11%  Similarity=0.093  Sum_probs=153.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCCeeE-eee---cccee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSPICH-VTA---NTYVT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~-~~~---~~~~~   75 (330)
                      +|++.|++|++|++.+++.+.++.+|.. +++++|+|||+.   .+.. ..++.+..+... .++.+. +..   .....
T Consensus         5 ~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~---l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~   79 (300)
T TIGR03866         5 VSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKL---LYVCASDSDTIQVIDLA-TGEVIGTLPSGPDPELFA   79 (300)
T ss_pred             EEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCE---EEEEECCCCeEEEEECC-CCcEEEeccCCCCccEEE
Confidence            4788999999999999999999987755 788999999986   1222 122233322221 122211 110   11123


Q ss_pred             ccCCc-EEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Ccccee
Q psy682           76 LHMPS-VVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLR  152 (330)
Q Consensus        76 ~~~~~-~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~  152 (330)
                      +.+++ .+.+++..++.+++|+....... ....+     ..+..+.|+||+.+...++........+..... ......
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            33333 23456667889999999764432 22211     134679999999954322322221222222110 000010


Q ss_pred             --eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-----Cc-----EEEe--HHHHHhhhccCCCcEE
Q psy682          153 --VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-----NR-----LFSS--ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       153 --~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-----d~-----ViaS--t~~lW~~SgS~Dgtvk  218 (330)
                        ....+++|+|||+++++++..|+.|++ |++++++.+..+..+.     ..     +..+  .-.+|- +...+++|.
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~-~~~~~~~i~  232 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSV-IDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV-ALGPANRVA  232 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEE-EEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE-EcCCCCeEE
Confidence              122467899999998787777999999 9999888766554221     11     1112  101111 334567899


Q ss_pred             EEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCce-eeecc
Q psy682          219 VHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNR-LRHES  273 (330)
Q Consensus       219 l~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~-las~~  273 (330)
                      +|+. +|++++.+.. ..  .+.+++|+|||+.|+++  .++.++.|..++.. ++...
T Consensus       233 v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       233 VVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9976 5787776642 23  68999999999998876  37889999876543 34443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332|consensus

Probab=99.72  E-value=7.8e-17  Score=147.95  Aligned_cols=213  Identities=14%  Similarity=0.133  Sum_probs=152.5

Q ss_pred             CcccCCCcEEEeeccc-c--cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFN-L--ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g--~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      ||++.|++||+..+.+ |  +++.+|.||++.||-|+|-.                                       +
T Consensus        27 ATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah---------------------------------------P   67 (299)
T KOG1332|consen   27 ATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH---------------------------------------P   67 (299)
T ss_pred             eeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc---------------------------------------c
Confidence            6899999999998764 3  68999999999999999954                                       1


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCCcccC---CCCCCCCCCCCCCccccCCCc---eeccCCCCCCCcceeccCCCCc-cc
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPI---LTHPTSNNNAPVPKRHLGDNFS-QK  150 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~~---~~h~~~~~~~~~~l~fs~D~~---l~~~s~~~~~~~~~~~l~~~~~-~~  150 (330)
                      .-+-++||++.|+.|-+|.-.++.-.+.   ..|..    .++++++-|..-   |+.++++++..+..-.-.+-.. .+
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~----SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k  143 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA----SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK  143 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc----cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence            1122469999999999999877754443   36654    466788888765   6666787777766444321111 11


Q ss_pred             ----eeeeeeEEEEecC---C-----------CeEEEeeccCCeEEEeeecccc--cccccccCCCCcE--EE--e----
Q psy682          151 ----LRVRHNCFVTTVD---S-----------RFLLACGFWDNSFREPFTTMYL--ALQEGKFDHPNRL--FS--S----  202 (330)
Q Consensus       151 ----~~~~~~~~~~spD---g-----------~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH~d~V--ia--S----  202 (330)
                          -++..+++.-+|-   |           +. +++|..|+++|+ |..+.+  ++.++|.+|.|.|  +|  +    
T Consensus       144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr-lvSgGcDn~Vki-W~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl  221 (299)
T KOG1332|consen  144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR-LVSGGCDNLVKI-WKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL  221 (299)
T ss_pred             hhhccccccceeeecCcCCCccccccCcccccce-eeccCCccceee-eecCCcchhhhhhhhhcchhhhhhhhccccCC
Confidence                1122245555553   4           44 566779999999 999765  6788899999999  22  1    


Q ss_pred             --HHHHHhhhccCCCcEEEEccc-------CceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          203 --ISLAWKNCQRDTSDVKVHTTF-------GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~~-------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                        ..++   |+|.||+|.||+.+       +++|.++.   +  .++.+++|+-|.+|+-+ ++..+.+|-.|+
T Consensus       222 ~~s~iA---S~SqDg~viIwt~~~e~e~wk~tll~~f~---~--~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  222 PKSTIA---SCSQDGTVIIWTKDEEYEPWKKTLLEEFP---D--VVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CceeeE---EecCCCcEEEEEecCccCcccccccccCC---c--ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence              2233   99999999999863       44555543   2  79999999999999655 688899996554

>KOG0292|consensus

Probab=99.71  E-value=3.6e-17  Score=169.79  Aligned_cols=215  Identities=12%  Similarity=0.132  Sum_probs=163.8

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      +=-.|.|+|||..=|.++..|.+|.+.|++|+|.|++-+                                         
T Consensus        27 slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qpl-----------------------------------------   65 (1202)
T KOG0292|consen   27 SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPL-----------------------------------------   65 (1202)
T ss_pred             eecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCe-----------------------------------------
Confidence            345799999999889999999999999999999997555                                         


Q ss_pred             EEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeeeeEEE-
Q psy682           83 TVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV-  159 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  159 (330)
                      .||++.|..||.||..... +-++.||-    +-+..+.|.+.-- +.+||.+-+..+|.|+-+. ..-.+++|...|- 
T Consensus        66 FVSGGDDykIkVWnYk~rrclftL~GHl----DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLFTLLGHL----DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMC  140 (1202)
T ss_pred             EEecCCccEEEEEecccceehhhhcccc----ceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEe
Confidence            4999999999999997666 55667996    5666799998877 7776666666667777443 3345677776554 


Q ss_pred             --EecCCCeEEEeeccCCeEEEeeeccccc---c-----------c---ccccCCCCcE----------------EEeHH
Q psy682          160 --TTVDSRFLLACGFWDNSFREPFTTMYLA---L-----------Q---EGKFDHPNRL----------------FSSIS  204 (330)
Q Consensus       160 --~spDg~~i~asg~~D~tirl~w~~~~g~---l-----------~---~~l~gH~d~V----------------iaSt~  204 (330)
                        |.|.-.. ++|+|-|.|||+ |++...+   .           +   ..|+|-.|.|                |..|.
T Consensus       141 AqFhptEDl-IVSaSLDQTVRV-WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  141 AQFHPTEDL-IVSASLDQTVRV-WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             eccCCccce-EEEecccceEEE-EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence              4564444 888999999999 9984211   1           1   1266666665                11222


Q ss_pred             HHHhhhccCCCcEEEEcc---cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCce
Q psy682          205 LAWKNCQRDTSDVKVHTT---FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~---~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~  268 (330)
                      -+-- ||++|+-||||--   .--.+-|.+||.+  .|.+|-|.|...+|+|.+ |++++.|.++-|.
T Consensus       219 pliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  219 PLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             ceEE-ecCCcceeeEEEeccccceeehhhhcccC--CcceEEecCccceeEecCCCccEEEEeccccc
Confidence            2211 9999999999942   4567889999999  999999999999999885 8899999988664

>KOG0284|consensus

Probab=99.70  E-value=7.5e-17  Score=156.18  Aligned_cols=236  Identities=15%  Similarity=0.150  Sum_probs=173.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------Cc-----ceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------SP-----MMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------~~-----l~~~~~~~d~~~~v~Fs~~   62 (330)
                      ++|+..|.+.||+...=..-..+++|.+.|+++..|++|..             .|     .++...|.+.|..++|||+
T Consensus       112 ltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpn  191 (464)
T KOG0284|consen  112 LTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPN  191 (464)
T ss_pred             EeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCC
Confidence            47899999999976322222346999999999999999998             11     1223466688999999997


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      ...                 .+|++.|++|++|+.- +.+-+.+.||.-    -++++.-.|--- +++++.++.+++|.
T Consensus       192 Dsk-----------------F~t~SdDg~ikiWdf~~~kee~vL~GHgw----dVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  192 DSK-----------------FLTCSDDGTIKIWDFRMPKEERVLRGHGW----DVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             Cce-----------------eEEecCCCeEEEEeccCCchhheeccCCC----CcceeccCCccceeEEccCCceeEeec
Confidence            664                 4999999999999964 555677788875    466788888766 66545545444443


Q ss_pred             eccCCCCccceeeeee---EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe-------HHHHHhhh
Q psy682          141 RHLGDNFSQKLRVRHN---CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS-------ISLAWKNC  210 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~---~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS-------t~~lW~~S  210 (330)
                      -+.+.-+ -++.+|.+   .+.|+|++.+ +++++.|.++|+ +++.+-+.+++..+|.+-|..-       -+..   +
T Consensus       251 prSg~cl-~tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv-~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft---s  324 (464)
T KOG0284|consen  251 PRSGSCL-ATLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKV-FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT---S  324 (464)
T ss_pred             CCCcchh-hhhhhccceEEEEEEcCCCCe-eEEccCCceEEE-EehhHhHHHHHhhcchhhheeecccccccccee---e
Confidence            3322222 35667765   4679999998 566789999999 9998778899999999987321       1222   8


Q ss_pred             ccCCCcEEEEccc-CceeeecC-CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          211 QRDTSDVKVHTTF-GDLLRSLD-PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       211 gS~Dgtvkl~~~~-G~ll~tL~-~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      |..||.|..|... -+.+-.+. +|.+  .|+++++.|=|.||++|+ +.++..|+.+
T Consensus       325 gg~Dgsvvh~~v~~~~p~~~i~~AHd~--~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  325 GGSDGSVVHWVVGLEEPLGEIPPAHDG--EIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccCCCceEEEeccccccccCCCccccc--ceeeeeccccceeEeecCCCcceeeeccC
Confidence            9999999999875 34454554 3666  999999999999999997 5567777643

>KOG0282|consensus

Probab=99.69  E-value=3.7e-17  Score=160.86  Aligned_cols=220  Identities=13%  Similarity=0.184  Sum_probs=132.5

Q ss_pred             CcccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +||+-|+.|+||++-+ +..++||.||...|.+++||.+|..                                      
T Consensus       231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~--------------------------------------  272 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTS--------------------------------------  272 (503)
T ss_pred             EecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCe--------------------------------------
Confidence            4899999999999876 8999999999999999999999988                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeeeeE
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRHNC  157 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~~~  157 (330)
                         ..|++-|+++|+|+..++...+. -|.   ...+.++-|.||+. +.. +++.+.+++.|.... .+-|...-|-.+
T Consensus       273 ---fLS~sfD~~lKlwDtETG~~~~~-f~~---~~~~~cvkf~pd~~n~fl-~G~sd~ki~~wDiRs~kvvqeYd~hLg~  344 (503)
T KOG0282|consen  273 ---FLSASFDRFLKLWDTETGQVLSR-FHL---DKVPTCVKFHPDNQNIFL-VGGSDKKIRQWDIRSGKVVQEYDRHLGA  344 (503)
T ss_pred             ---eeeeecceeeeeeccccceEEEE-Eec---CCCceeeecCCCCCcEEE-EecCCCcEEEEeccchHHHHHHHhhhhh
Confidence               37889999999999977653332 111   12455566666653 211 133333333333211 011111122234


Q ss_pred             EE---EecCCCeEEEeeccCCeEEEeeecccccccccccCCCC---cEEEe-HHHHHhhhccCCCcEEEEcccCc----e
Q psy682          158 FV---TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN---RLFSS-ISLAWKNCQRDTSDVKVHTTFGD----L  226 (330)
Q Consensus       158 ~~---~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d---~ViaS-t~~lW~~SgS~Dgtvkl~~~~G~----l  226 (330)
                      +.   |=++|++.+ +.+.|+++|+ |....+-+++-+..+.-   .-+.. ---=|..+-|.|.-|-|+.+.-+    .
T Consensus       345 i~~i~F~~~g~rFi-ssSDdks~ri-We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  345 ILDITFVDEGRRFI-SSSDDKSVRI-WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             eeeeEEccCCceEe-eeccCccEEE-EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            44   345555533 3345666666 65544433332222211   11111 00001116677777777654322    2


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCce
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~  268 (330)
                      -+.++||...+---.|.|||||.+|+||+ +|.+..|.-+-..
T Consensus       423 kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k  465 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK  465 (503)
T ss_pred             hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence            34677886655667899999999999995 9999999766443

>PTZ00420 coronin; Provisional

Probab=99.69  E-value=2.1e-16  Score=162.96  Aligned_cols=200  Identities=8%  Similarity=0.089  Sum_probs=131.2

Q ss_pred             CcccCCCcEEEeeccccc--------ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeecc
Q psy682            1 MSGGDKGIVEVWRTFNLA--------LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANT   72 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--------~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~   72 (330)
                      |||+.||+||||++.++.        .+.++.+|...|.+|+|+|++..                               
T Consensus        91 ASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-------------------------------  139 (568)
T PTZ00420         91 ASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-------------------------------  139 (568)
T ss_pred             EEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-------------------------------
Confidence            689999999999997542        23467888888888888887665                               


Q ss_pred             ceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccce
Q psy682           73 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKL  151 (330)
Q Consensus        73 ~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~  151 (330)
                               ++||++.|++|++|+...+.......|.    ..+.++.|++||.+.++ ++.+..+..|.+.. ....++
T Consensus       140 ---------iLaSgS~DgtIrIWDl~tg~~~~~i~~~----~~V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        140 ---------IMCSSGFDSFVNIWDIENEKRAFQINMP----KKLSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             ---------EEEEEeCCCeEEEEECCCCcEEEEEecC----CcEEEEEECCCCCEEEE-EecCCEEEEEECCCCcEEEEE
Confidence                     4588899999999999766533322343    35778999999995532 22223344444322 112334


Q ss_pred             eeeee-----E---EEEecCCCeEEEeeccC---CeEEEeeeccc-cccccccc--CCCCcEEE---e---HHHHHhhhc
Q psy682          152 RVRHN-----C---FVTTVDSRFLLACGFWD---NSFREPFTTMY-LALQEGKF--DHPNRLFS---S---ISLAWKNCQ  211 (330)
Q Consensus       152 ~~~~~-----~---~~~spDg~~i~asg~~D---~tirl~w~~~~-g~l~~~l~--gH~d~Via---S---t~~lW~~Sg  211 (330)
                      .+|..     +   ..|++|+++|+++|+.+   ++|+| |++.. ++.+....  .+...++-   +   .+.+   +|
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL-WDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l---sG  281 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL-WDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL---IG  281 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE-EECCCCCCceEEEEecCCccceEEeeeCCCCCEEE---EE
Confidence            44431     1   23568999988888644   47999 99874 55554432  23333311   1   3344   89


Q ss_pred             cCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCcc
Q psy682          212 RDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGV  249 (330)
Q Consensus       212 S~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~  249 (330)
                      +.|++|++|......++.|.......+...++|.|.-.
T Consensus       282 kGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        282 KGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            99999999987544566666543334788999999754

>KOG0276|consensus

Probab=99.68  E-value=1.1e-16  Score=161.37  Aligned_cols=208  Identities=12%  Similarity=0.104  Sum_probs=167.2

Q ss_pred             cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      =.+|.|.+||.++..+.+.|.-..-.|++-.|=+-.                        ++                 .
T Consensus        32 LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk------------------------nW-----------------i   70 (794)
T KOG0276|consen   32 LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK------------------------NW-----------------I   70 (794)
T ss_pred             eecCeeEEEecccceeeeeeeecccchhhheeeecc------------------------ce-----------------E
Confidence            367889999998877877777776677666665533                        33                 3


Q ss_pred             EEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC-CceeccCCCCCCCcceeccCCCCccceeeeee---EE
Q psy682           84 VTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN---CF  158 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D-~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~---~~  158 (330)
                      ++++.|+-|++.|.++.+ ..++..|.+    -..++...|- |.++++|.+...++|.|+-.-...|++++|+.   ++
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~D----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSD----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeecccc----ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            888889999999987555 777788874    4556777774 44676677777788888877778899999984   78


Q ss_pred             EEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-E---Ee----HHHHHhhhccCCCcEEEEcc-cCceee
Q psy682          159 VTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-F---SS----ISLAWKNCQRDTSDVKVHTT-FGDLLR  228 (330)
Q Consensus       159 ~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-i---aS----t~~lW~~SgS~Dgtvkl~~~-~G~ll~  228 (330)
                      +|.| |... +|+++-|+|||+ |++.+-...-++.||..-| .   .+    -.++   ||++|.|||||+- +-..++
T Consensus       147 ~fnPkD~nt-FaS~sLDrTVKV-Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI---sgaDD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  147 AFNPKDPNT-FASASLDRTVKV-WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI---SGADDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EecCCCccc-eeeeeccccEEE-EEcCCCCCceeeeccccCcceEEeccCCCcceEE---ecCCCceEEEeecchHHHHH
Confidence            8999 5555 888999999999 9997777888999999988 2   22    2333   9999999999986 578899


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      ||+||..  -|+.+.|.|+=-+++||+ ||++++|-
T Consensus       222 TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  222 TLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             Hhhcccc--cceEEEecCCCcEEEEecCCccEEEec
Confidence            9999999  899999999999999996 88887775

>KOG0308|consensus

Probab=99.68  E-value=1.5e-16  Score=160.91  Aligned_cols=203  Identities=11%  Similarity=0.114  Sum_probs=159.3

Q ss_pred             cccCCCcEEEeeccccc------ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeecccee
Q psy682            2 SGGDKGIVEVWRTFNLA------LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVT   75 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~------~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~   75 (330)
                      |||.||+||+|+...-.      -+.+++.|.+||++++.--+|+.                                  
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t----------------------------------   87 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT----------------------------------   87 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc----------------------------------
Confidence            79999999999876422      27789999999999999888776                                  


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccc-cCCCceeccCCCCCCCcceeccCCCCc---
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDNFS---  148 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~f-s~D~~l~~~s~~~~~~~~~~~l~~~~~---  148 (330)
                             .+|++.|.|||+|+..-+.   .+++..|.    +=+.+++. .+|-.++ +|+|-+..+..|.+.....   
T Consensus        88 -------lIS~SsDtTVK~W~~~~~~~~c~stir~H~----DYVkcla~~ak~~~lv-aSgGLD~~IflWDin~~~~~l~  155 (735)
T KOG0308|consen   88 -------LISASSDTTVKVWNAHKDNTFCMSTIRTHK----DYVKCLAYIAKNNELV-ASGGLDRKIFLWDINTGTATLV  155 (735)
T ss_pred             -------eEEecCCceEEEeecccCcchhHhhhhccc----chheeeeecccCceeE-EecCCCccEEEEEccCcchhhh
Confidence                   4888999999999997553   56667897    57788988 6666654 3566666666777653211   


Q ss_pred             ---cceeee---------eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe---HHHHHhhh
Q psy682          149 ---QKLRVR---------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS---ISLAWKNC  210 (330)
Q Consensus       149 ---~~~~~~---------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS---t~~lW~~S  210 (330)
                         ..++..         ..++|.++.| +++++|+..+-||+ |+..+++-+-.|.||.|-|   +.+   |-.|   |
T Consensus       156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~-wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l---s  230 (735)
T KOG0308|consen  156 ASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRL-WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL---S  230 (735)
T ss_pred             hhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEE-eccccccceeeeeccccceEEEEEcCCCCeEe---e
Confidence               111111         1478888888 66888889999999 9999998888888999987   232   5555   9


Q ss_pred             ccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCC
Q psy682          211 QRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG  257 (330)
Q Consensus       211 gS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~  257 (330)
                      ||.|||||||++ .-+.+.|+..|+.  .|+++..+|+=+.+.+|+++
T Consensus       231 ~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             cCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCC
Confidence            999999999987 5788999999999  89999999999999999744

>KOG0278|consensus

Probab=99.67  E-value=2.7e-16  Score=144.93  Aligned_cols=203  Identities=15%  Similarity=0.145  Sum_probs=152.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      |||+.|=+-|+||.-+|..|.+| .|...|.++||+.|.+.                   +|.+...+|...|..+.|-.
T Consensus        75 asaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   75 ASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH  153 (334)
T ss_pred             hhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec
Confidence            68899999999999999999998 59999999999999887                   45556678888888888776


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      ..+-+                 .|+..|+||+||+...+...++..-    +.++.++-+++||.+.+.+.++...-|.-
T Consensus       154 eD~~i-----------------LSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia~gssV~Fwda  212 (334)
T KOG0278|consen  154 EDKCI-----------------LSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQDGRILTIAYGSSVKFWDA  212 (334)
T ss_pred             cCceE-----------------EeeccCCceEEEEeccCcEEEEEec----CCCCcceeeccCCCEEEEecCceeEEecc
Confidence            65543                 5668899999999876654444322    34788999999999888777776665522


Q ss_pred             -ccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEE
Q psy682          142 -HLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       142 -~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~  220 (330)
                       .++-.=...++....+-..+|+..+ ++||..|.-+.. |+.++|+.+...                            
T Consensus       213 ksf~~lKs~k~P~nV~SASL~P~k~~-fVaGged~~~~k-fDy~TgeEi~~~----------------------------  262 (334)
T KOG0278|consen  213 KSFGLLKSYKMPCNVESASLHPKKEF-FVAGGEDFKVYK-FDYNTGEEIGSY----------------------------  262 (334)
T ss_pred             ccccceeeccCccccccccccCCCce-EEecCcceEEEE-EeccCCceeeec----------------------------
Confidence             2221111123333445568899866 777778887777 888777665431                            


Q ss_pred             cccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          221 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       221 ~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                               -+||.+  +|.+|.|||||...|||| ||+|++|..+-
T Consensus       263 ---------nkgh~g--pVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  263 ---------NKGHFG--PVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ---------ccCCCC--ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence                     145556  999999999999999997 99999998764

>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling

Probab=99.67  E-value=6.5e-18  Score=159.53  Aligned_cols=102  Identities=44%  Similarity=0.831  Sum_probs=63.3

Q ss_pred             CeEEEeeccCCe------EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCC
Q psy682          165 RFLLACGFWDNS------FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA  237 (330)
Q Consensus       165 ~~i~asg~~D~t------irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~  237 (330)
                      ++++.++|....      +|+ |++...-.++.+.++|.++++.|....|+.+-                          
T Consensus        86 ~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~--------------------------  139 (270)
T PF02138_consen   86 PFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVT--------------------------  139 (270)
T ss_dssp             --SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHH--------------------------
T ss_pred             CccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhh--------------------------
Confidence            344555544433      477 88776678888999999999999888888421                          


Q ss_pred             CCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCC
Q psy682          238 SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPW  317 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~w  317 (330)
                                                         ....+++|||||||++||||+|.|+|+||.   |+.|+||+||+|
T Consensus       140 -----------------------------------~~~~d~~EliPEff~~Pe~f~N~n~~~~g~---~~~~~dV~LP~W  181 (270)
T PF02138_consen  140 -----------------------------------ENMNDVKELIPEFFYLPEFFKNINNFDLGK---GEDVDDVELPPW  181 (270)
T ss_dssp             -----------------------------------H-TT----B-GGGGT-GGGGS-TT-SS--B---S-B-SS-B--TT
T ss_pred             -----------------------------------cCCccccccChhhhCCHHHhcccccccccC---CCccceeecCCc
Confidence                                               124579999999999999999999999998   899999999999


Q ss_pred             CCCHHHHHHHhcC
Q psy682          318 ASSPEQFVRINRM  330 (330)
Q Consensus       318 a~s~~~fi~~~r~  330 (330)
                      |+||++||++||+
T Consensus       182 a~s~~~FV~~~R~  194 (270)
T PF02138_consen  182 AKSPFEFVYKHRK  194 (270)
T ss_dssp             -SSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHH
Confidence            9999999999994

The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.

>KOG0643|consensus

Probab=99.66  E-value=4.6e-16  Score=144.35  Aligned_cols=170  Identities=14%  Similarity=0.184  Sum_probs=120.3

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      |++.|.++.+|...+|+.|-++.||++.||+++.+-+.+.                                        
T Consensus        27 scaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~----------------------------------------   66 (327)
T KOG0643|consen   27 SCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKH----------------------------------------   66 (327)
T ss_pred             EecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcce----------------------------------------
Confidence            6789999999999899999999999999999999887666                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc----ceeccCCCC----cc--ce
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV----PKRHLGDNF----SQ--KL  151 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~----~~~~l~~~~----~~--~~  151 (330)
                       .+|++.|.++|||+..++...-+..    .+.+++.+.|+.++.++.++.+..-+.    ....+...-    .+  -+
T Consensus        67 -liTGSAD~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   67 -LITGSADQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             -eeeccccceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence             5899999999999997665333221    135788999999999666544333221    111211110    00  11


Q ss_pred             eee-----eeEEEEecCCCeEEEeeccCCeEEEeeecccc-cccccccCCCCcE----EEe--HHHHHhhhccCCCcEEE
Q psy682          152 RVR-----HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKV  219 (330)
Q Consensus       152 ~~~-----~~~~~~spDg~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl  219 (330)
                      .+-     ......+|-+++|++++ .|++|+. |+..+| ++++....|...|    ++.  |.-+   +||.|.|.||
T Consensus       142 kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~-~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi---T~s~Dttakl  216 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLGETIIAGH-EDGSISI-YDARTGKELVDSDEEHSSKINDLQFSRDRTYFI---TGSKDTTAKL  216 (327)
T ss_pred             EecCCccceeeeeecccCCEEEEec-CCCcEEE-EEcccCceeeechhhhccccccccccCCcceEE---ecccCcccee
Confidence            111     13445688899977655 7999999 999988 5788888888766    221  3333   7888888888


Q ss_pred             Ec
Q psy682          220 HT  221 (330)
Q Consensus       220 ~~  221 (330)
                      |+
T Consensus       217 ~D  218 (327)
T KOG0643|consen  217 VD  218 (327)
T ss_pred             ee
Confidence            86

>PTZ00421 coronin; Provisional

Probab=99.64  E-value=1.3e-15  Score=155.14  Aligned_cols=198  Identities=11%  Similarity=0.116  Sum_probs=130.0

Q ss_pred             CcccCCCcEEEeecccc-------cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682            1 MSGGDKGIVEVWRTFNL-------ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g-------~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      |||+.|++|++|++.++       +.+.+|.+|...|++|+|+|++..                                
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--------------------------------  139 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--------------------------------  139 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC--------------------------------
Confidence            58999999999999765       346678888888888888886533                                


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccc
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQK  150 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~  150 (330)
                              +++|++.|++|++|+...+. ...+.+|.    +.+.++.|+||+. +++++.++.  +..|.+.. ....+
T Consensus       140 --------iLaSgs~DgtVrIWDl~tg~~~~~l~~h~----~~V~sla~spdG~lLatgs~Dg~--IrIwD~rsg~~v~t  205 (493)
T PTZ00421        140 --------VLASAGADMVVNVWDVERGKAVEVIKCHS----DQITSLEWNLDGSLLCTTSKDKK--LNIIDPRDGTIVSS  205 (493)
T ss_pred             --------EEEEEeCCCEEEEEECCCCeEEEEEcCCC----CceEEEEEECCCCEEEEecCCCE--EEEEECCCCcEEEE
Confidence                    25888999999999987654 44455786    4677899999999 554333333  33444321 11223


Q ss_pred             eeeee----eEEEEecCCCeEEEeec---cCCeEEEeeeccccc-ccccccCCC-CcEE---Ee--HHHHHhhhccCCCc
Q psy682          151 LRVRH----NCFVTTVDSRFLLACGF---WDNSFREPFTTMYLA-LQEGKFDHP-NRLF---SS--ISLAWKNCQRDTSD  216 (330)
Q Consensus       151 ~~~~~----~~~~~spDg~~i~asg~---~D~tirl~w~~~~g~-l~~~l~gH~-d~Vi---aS--t~~lW~~SgS~Dgt  216 (330)
                      +..|.    ....+.+++..|+++|.   .|++|++ |++.+.+ .......|. ..++   .+  .-.++- .|..||+
T Consensus       206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl-WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l-ggkgDg~  283 (493)
T PTZ00421        206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML-WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI-GSKGEGN  283 (493)
T ss_pred             EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE-EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE-EEeCCCe
Confidence            33342    24567888888888773   5899999 9986543 333333232 2221   11  111110 3446999


Q ss_pred             EEEEcc-cCceeeecCCCCCCCCCcEEEeCCC
Q psy682          217 VKVHTT-FGDLLRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       217 vkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d  247 (330)
                      |++|+. +|+++..++..+. .++..++|.|.
T Consensus       284 Iriwdl~~~~~~~~~~~~s~-~~~~g~~~~pk  314 (493)
T PTZ00421        284 IRCFELMNERLTFCSSYSSV-EPHKGLCMMPK  314 (493)
T ss_pred             EEEEEeeCCceEEEeeccCC-CCCcceEeccc
Confidence            999976 6888877765433 26788888885

>KOG0277|consensus

Probab=99.64  E-value=8.2e-16  Score=141.89  Aligned_cols=213  Identities=12%  Similarity=0.064  Sum_probs=160.5

Q ss_pred             CcccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++++.||++|||++.- ..++..|+.|...|.+|..++--+.                                      
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~--------------------------------------  118 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRR--------------------------------------  118 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccce--------------------------------------
Confidence            3678899999999642 4688999999999999999985444                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCccceeeee-
Q psy682           80 SVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQKLRVRH-  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~~~~~~-  155 (330)
                        ..++++.|+|||||+++-+. +.|+.||.    +-++...|+|--.  ++++|+++.-.+|..+..+.+ ..++.|. 
T Consensus       119 --~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~  191 (311)
T KOG0277|consen  119 --IFLTSSWDGTIKLWDPNRPNSVQTFNGHN----SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNS  191 (311)
T ss_pred             --eEEeeccCCceEeecCCCCcceEeecCCc----cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccc
Confidence              34667999999999998655 66777996    5677788887655  666555555555544433322 2266665 


Q ss_pred             --eEEEEecCCCeEEEeeccCCeEEEeeeccccc-ccccccCCCCcE--E--Ee---HHHHHhhhccCCCcEEEEcc--c
Q psy682          156 --NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-LQEGKFDHPNRL--F--SS---ISLAWKNCQRDTSDVKVHTT--F  223 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-l~~~l~gH~d~V--i--aS---t~~lW~~SgS~Dgtvkl~~~--~  223 (330)
                        .|-.++.....++++|..|+.||. |++..-+ .+..|.||.=.|  +  +.   .+++   |+|.|=|++||+.  .
T Consensus       192 Eil~cdw~ky~~~vl~Tg~vd~~vr~-wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa---SasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATGGVDNLVRG-WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA---SASYDMTVRIWDPERQ  267 (311)
T ss_pred             eeEeecccccCCcEEEecCCCceEEE-EehhhccccceeecCCceEEEEEecCcchhhHhh---hccccceEEecccccc
Confidence              354566667778999999999999 9996544 577889998777  2  22   6666   9999999999975  3


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCC-ccEEEEcc-CCeEEEEee
Q psy682          224 GDLLRSLDPPSGFASPESVVMSRE-GVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~d-G~~l~s~~-~~~~~~~s~  264 (330)
                      --++++...|+.  -|..+.+|+. +..+|+.+ |..+..|.+
T Consensus       268 ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence            567888889988  7889999964 66777776 888888886

>KOG0273|consensus

Probab=99.64  E-value=3e-15  Score=147.16  Aligned_cols=201  Identities=13%  Similarity=0.142  Sum_probs=149.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEe---------CCCCCc--------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLAL---------SHDQKY--------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svaf---------Spdg~~--------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      +||+.||++.|||..+|+..+.|..|...-.+|.+         ++||.+        .|..++.||...|..++|.|.+
T Consensus       292 lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg  371 (524)
T KOG0273|consen  292 LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG  371 (524)
T ss_pred             EeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence            47899999999999999999999999988333322         566666        8888999999999999999999


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceec
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH  142 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~  142 (330)
                      .++                 +|++.|.|+|+|+... ...--+..|+.    ..+.+.-||++.                
T Consensus       372 ~LL-----------------aS~SdD~TlkiWs~~~~~~~~~l~~Hsk----ei~t~~wsp~g~----------------  414 (524)
T KOG0273|consen  372 SLL-----------------ASCSDDGTLKIWSMGQSNSVHDLQAHSK----EIYTIKWSPTGP----------------  414 (524)
T ss_pred             ceE-----------------EEecCCCeeEeeecCCCcchhhhhhhcc----ceeeEeecCCCC----------------
Confidence            985                 9999999999999633 32333345542    111222222221                


Q ss_pred             cCCCCccceeeeeeEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e---HHHHHhhhccCCC
Q psy682          143 LGDNFSQKLRVRHNCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S---ISLAWKNCQRDTS  215 (330)
Q Consensus       143 l~~~~~~~~~~~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dg  215 (330)
                                     +.-.| ++-. +++++.|.++|+ |+.+.|..+.++.+|.+.|.+   |   --.+   |||.||
T Consensus       415 ---------------v~~n~~~~~~-l~sas~dstV~l-wdv~~gv~i~~f~kH~~pVysvafS~~g~ylA---sGs~dg  474 (524)
T KOG0273|consen  415 ---------------VTSNPNMNLM-LASASFDSTVKL-WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA---SGSLDG  474 (524)
T ss_pred             ---------------ccCCCcCCce-EEEeecCCeEEE-EEccCCceeEeeccCCCceEEEEecCCCcEEE---ecCCCC
Confidence                           11122 2334 445557999999 999999999999999999932   2   3334   999999


Q ss_pred             cEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCccEE-EEccCCeEEE
Q psy682          216 DVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIV-VNYERGHIAA  261 (330)
Q Consensus       216 tvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~~~~~~~~  261 (330)
                      -|-||. ..|++.+++.+-.   .|..|+++-+|..| |+++++.++.
T Consensus       475 ~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  475 CVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGSVCV  519 (524)
T ss_pred             eeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCCceE
Confidence            999995 5899999999853   59999999988655 4557776543

>KOG0313|consensus

Probab=99.64  E-value=1.6e-15  Score=145.92  Aligned_cols=195  Identities=12%  Similarity=0.126  Sum_probs=144.0

Q ss_pred             CcccCCCcEEEeeccccc----ccceeecCCCceeEEEeCCCCCc-----------------------------------
Q psy682            1 MSGGDKGIVEVWRTFNLA----LLYAFPSCDSSVRSLALSHDQKY-----------------------------------   41 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~----~l~tl~gH~~~V~svafSpdg~~-----------------------------------   41 (330)
                      ++||.|.|++||..+.|+    .++.++||.+.|-+|+-.+||..                                   
T Consensus       163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence            589999999999998775    44556899999999999999987                                   


Q ss_pred             --------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCC
Q psy682           42 --------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPG  113 (330)
Q Consensus        42 --------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~  113 (330)
                              .|+.+..||.+.|++|.|++.+-                  ..|++.|.|||.|+...+.......-.    
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v------------------~yS~SwDHTIk~WDletg~~~~~~~~~----  300 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATV------------------IYSVSWDHTIKVWDLETGGLKSTLTTN----  300 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcCCCc------------------eEeecccceEEEEEeecccceeeeecC----
Confidence                    45666779999999999988333                  488899999999999766544443221    


Q ss_pred             CCCCCccccCCCceec-cCCCCCCCcc-eeccCC-CCccceeeeee---EEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682          114 SPPGNLPLTLDPILTH-PTSNNNAPVP-KRHLGD-NFSQKLRVRHN---CFVTTVDSRFLLACGFWDNSFREPFTTMYLA  187 (330)
Q Consensus       114 ~~~~~l~fs~D~~l~~-~s~~~~~~~~-~~~l~~-~~~~~~~~~~~---~~~~spDg~~i~asg~~D~tirl~w~~~~g~  187 (330)
                      ..-+++..+++-.+.. ++++-.-.++ .|.-.+ -..+++.+|.+   .+-.+|...+++++|+.|+++|+ |++.+-+
T Consensus       301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl-WDvRS~k  379 (423)
T KOG0313|consen  301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL-WDVRSTK  379 (423)
T ss_pred             cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE-EEeccCC
Confidence            2455788888888443 2222212222 111111 12345666654   56679999999999999999999 9998877


Q ss_pred             -ccccccCCCCcEEEe-----HHHHHhhhccCCCcEEEEc
Q psy682          188 -LQEGKFDHPNRLFSS-----ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       188 -l~~~l~gH~d~ViaS-----t~~lW~~SgS~Dgtvkl~~  221 (330)
                       .+..+.+|.|.|++-     ..++   ||+.|.+++|..
T Consensus       380 ~plydI~~h~DKvl~vdW~~~~~Iv---SGGaD~~l~i~~  416 (423)
T KOG0313|consen  380 APLYDIAGHNDKVLSVDWNEGGLIV---SGGADNKLRIFK  416 (423)
T ss_pred             CcceeeccCCceEEEEeccCCceEE---eccCcceEEEec
Confidence             889999999999763     2333   999999999963

>KOG0275|consensus

Probab=99.63  E-value=1.5e-16  Score=150.86  Aligned_cols=221  Identities=14%  Similarity=0.191  Sum_probs=148.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +|||-||-|.+||.-+|++.+.|+-...         |   +.|    ++++.|..+.||-|+..               
T Consensus       229 vsgSvDGFiEVWny~~GKlrKDLkYQAq---------d---~fM----Mmd~aVlci~FSRDsEM---------------  277 (508)
T KOG0275|consen  229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------D---NFM----MMDDAVLCISFSRDSEM---------------  277 (508)
T ss_pred             eeccccceeeeehhccchhhhhhhhhhh---------c---cee----ecccceEEEeecccHHH---------------
Confidence            5899999999999999988776642111         0   111    34566666666666665               


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCC-CCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                        +||++.|+.||+|....+. ++.+- .|+.    .+.+++||.|+. +++++.+-+..+.-.+ .+.+...+++|+  
T Consensus       278 --lAsGsqDGkIKvWri~tG~ClRrFdrAHtk----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSy  350 (508)
T KOG0275|consen  278 --LASGSQDGKIKVWRIETGQCLRRFDRAHTK----GVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSY  350 (508)
T ss_pred             --hhccCcCCcEEEEEEecchHHHHhhhhhcc----CeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcCcccc
Confidence              4999999999999987665 56665 7873    677899999998 6653332222221112 233446677776  


Q ss_pred             -eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------------EEe----HHHH---------
Q psy682          156 -NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------------FSS----ISLA---------  206 (330)
Q Consensus       156 -~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------------iaS----t~~l---------  206 (330)
                       +...|++||.+|+++. .|+|+|+ |+..++++++++..-....               |+.    |+.+         
T Consensus       351 vn~a~ft~dG~~iisaS-sDgtvkv-W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr  428 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISAS-SDGTVKV-WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR  428 (508)
T ss_pred             ccceEEcCCCCeEEEec-CCccEEE-ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence             4566999999977765 7999999 9999998887776533221               110    1111         


Q ss_pred             ----------------------HhhhccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          207 ----------------------WKNCQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       207 ----------------------W~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                                            |--+...|+..--+. ..|+|-++|.-|+.  -|-.++-.|+-..||+++ |+.+.+|
T Consensus       429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhcccchhhhc
Confidence                                  111556666655553 46777778777777  677777778888888775 6667766


Q ss_pred             e
Q psy682          263 T  263 (330)
Q Consensus       263 s  263 (330)
                      .
T Consensus       507 k  507 (508)
T KOG0275|consen  507 K  507 (508)
T ss_pred             C
Confidence            5

>KOG0267|consensus

Probab=99.62  E-value=1.3e-15  Score=155.72  Aligned_cols=207  Identities=14%  Similarity=0.172  Sum_probs=152.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ++|+.|-.+.||....=-.+..|.||...|.+|.|+++..+                                       
T Consensus        44 ~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L---------------------------------------   84 (825)
T KOG0267|consen   44 VTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL---------------------------------------   84 (825)
T ss_pred             ccCCCceeeccccccCCchhheeeccCCcceeeecCcchhh---------------------------------------
Confidence            46778888888877443345567888888888888886555                                       


Q ss_pred             EEEEEcCCcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCcee-ccCCCCCCCcceeccCCCCccceeee---e
Q psy682           81 VVTVTANHQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVR---H  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~l~-~~s~~~~~~~~~~~l~~~~~~~~~~~---~  155 (330)
                        ++.+..+++||+|++.. ...+++.||.    ....+|.|+|=+.+. ..|.+.+-++|..+..+. .-++.+|   .
T Consensus        85 --laagsasgtiK~wDleeAk~vrtLtgh~----~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv  157 (825)
T KOG0267|consen   85 --LAAGSASGTIKVWDLEEAKIVRTLTGHL----LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVV  157 (825)
T ss_pred             --hcccccCCceeeeehhhhhhhhhhhccc----cCcceeeeccceEEeccccccccceehhhhccCc-eeeecCCccee
Confidence              47888899999999963 3477788997    466678899999954 334555555553332222 1122222   3


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe------HHHHHhhhccCCCcEEEEccc-Cceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS------ISLAWKNCQRDTSDVKVHTTF-GDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS------t~~lW~~SgS~Dgtvkl~~~~-G~ll~  228 (330)
                      ++.+|+|||++ ++.|..|.++|+ |+.-.|++...+.+|...|++-      ....   +||.|+||++|+.+ =+++.
T Consensus       158 ~~l~lsP~Gr~-v~~g~ed~tvki-~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla---~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  158 DVLRLSPDGRW-VASGGEDNTVKI-WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLA---PGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             EEEeecCCCce-eeccCCcceeee-ecccccccccccccccccccccccCchhhhhc---cCCCCceeeeeccceeEEee
Confidence            68899999999 555657999999 9998899999999999988542      3333   99999999999875 56666


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEccCCeEE
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYERGHIA  260 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~  260 (330)
                      ..++-.+  .|.+++|+|||+++.+|.+.++.
T Consensus       233 s~~~~~~--~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  233 SGKPETD--GVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccCCccC--CceeeeecCCceeeecCchhhhh
Confidence            6666555  89999999999999999655443

>KOG0288|consensus

Probab=99.62  E-value=1.2e-15  Score=148.03  Aligned_cols=219  Identities=14%  Similarity=0.180  Sum_probs=157.2

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.|..|++|++..++  ++.+|.|-.+.|.+++|.++++.                                     
T Consensus       191 atgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~-------------------------------------  233 (459)
T KOG0288|consen  191 ATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH-------------------------------------  233 (459)
T ss_pred             hhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce-------------------------------------
Confidence            589999999999998766  88999999999999999999888                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH  155 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~  155 (330)
                          ..+++.|+++++||.+... ..|+.||++    ++.++-|...-. ..+++++-+.+.|  .+.. .-..++-.-+
T Consensus       234 ----~iAas~d~~~r~Wnvd~~r~~~TLsGHtd----kVt~ak~~~~~~~vVsgs~DRtiK~W--Dl~k~~C~kt~l~~S  303 (459)
T KOG0288|consen  234 ----VIAASNDKNLRLWNVDSLRLRHTLSGHTD----KVTAAKFKLSHSRVVSGSADRTIKLW--DLQKAYCSKTVLPGS  303 (459)
T ss_pred             ----EEeecCCCceeeeeccchhhhhhhccccc----ceeeehhhccccceeeccccchhhhh--hhhhhheeccccccc
Confidence                3666778889999998666 455569985    666777777666 4443444434433  3321 1112222233


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee---HHHHHhhhccCCCcEEEEcccCce-ee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS---ISLAWKNCQRDTSDVKVHTTFGDL-LR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS---t~~lW~~SgS~Dgtvkl~~~~G~l-l~  228 (330)
                      .|..+-... ..+.+|+.|++||. |+..++.+......|. .|  + .+   .-.+   |.|.|.|+++++..+.- ..
T Consensus       304 ~cnDI~~~~-~~~~SgH~DkkvRf-wD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL---sssRDdtl~viDlRt~eI~~  377 (459)
T KOG0288|consen  304 QCNDIVCSI-SDVISGHFDKKVRF-WDIRSADKTRSVPLGG-RVTSLDLSMDGLELL---SSSRDDTLKVIDLRTKEIRQ  377 (459)
T ss_pred             cccceEecc-eeeeecccccceEE-EeccCCceeeEeecCc-ceeeEeeccCCeEEe---eecCCCceeeeecccccEEE
Confidence            443333323 34777889999999 9988888888888887 34  1 11   3333   67999999999876644 45


Q ss_pred             ecCCCCCC--CCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeec
Q psy682          229 SLDPPSGF--ASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       229 tL~~h~~~--~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~  272 (330)
                      ++.....+  +-++.+.|||||.++|.|+ ++.+++|+.++-.|-+.
T Consensus       378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            56654331  3589999999999999996 99999999998777544

>KOG0285|consensus

Probab=99.62  E-value=4.7e-15  Score=142.12  Aligned_cols=176  Identities=13%  Similarity=0.151  Sum_probs=137.9

Q ss_pred             cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      ++-+.++||.+||++||+-|-.+.                                         .+|++.|+|||+|+.
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~w-----------------------------------------f~tgs~DrtikIwDl  180 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEW-----------------------------------------FATGSADRTIKIWDL  180 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCcee-----------------------------------------EEecCCCceeEEEEc
Confidence            456678999999999999996665                                         499999999999999


Q ss_pred             CCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCe
Q psy682           98 DYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNS  176 (330)
Q Consensus        98 ~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~t  176 (330)
                      ..+.++ +++||-+                                           ...-++||+--.|+++|| .|+.
T Consensus       181 atg~LkltltGhi~-------------------------------------------~vr~vavS~rHpYlFs~g-edk~  216 (460)
T KOG0285|consen  181 ATGQLKLTLTGHIE-------------------------------------------TVRGVAVSKRHPYLFSAG-EDKQ  216 (460)
T ss_pred             ccCeEEEeecchhh-------------------------------------------eeeeeeecccCceEEEec-CCCe
Confidence            554322 2223321                                           123567888888988887 7999


Q ss_pred             EEEeeecccccccccccCCCCcEEE----eHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEE
Q psy682          177 FREPFTTMYLALQEGKFDHPNRLFS----SISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV  251 (330)
Q Consensus       177 irl~w~~~~g~l~~~l~gH~d~Via----St~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l  251 (330)
                      ||+ |+++..+.++...||-..|..    .|+.+-- +|++|-|||+|+. +-.-+.+|.||.+  .|.+|.+-|-.-.+
T Consensus       217 VKC-wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~grDst~RvWDiRtr~~V~~l~GH~~--~V~~V~~~~~dpqv  292 (460)
T KOG0285|consen  217 VKC-WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TGGRDSTIRVWDIRTRASVHVLSGHTN--PVASVMCQPTDPQV  292 (460)
T ss_pred             eEE-EechhhhhHHHhccccceeEEEeccccceeEE-ecCCcceEEEeeecccceEEEecCCCC--cceeEEeecCCCce
Confidence            999 999999999999999998832    2332211 9999999999975 5677999999999  99999999865556


Q ss_pred             EEcc-CCeEEEEe-eCCceeeeccCcc-cccccc
Q psy682          252 VNYE-RGHIAAFT-MNGNRLRHESHND-NLQELI  282 (330)
Q Consensus       252 ~s~~-~~~~~~~s-~nG~~las~~~~~-dVkELi  282 (330)
                      +++| |.++++|. .+||...++..|. .+++|.
T Consensus       293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~  326 (460)
T KOG0285|consen  293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC  326 (460)
T ss_pred             EEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence            6776 89999995 6899998888663 466664

>KOG0315|consensus

Probab=99.61  E-value=8.7e-15  Score=134.89  Aligned_cols=191  Identities=14%  Similarity=0.171  Sum_probs=143.0

Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc--CCC-Cccceeeee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--GDN-FSQKLRVRH  155 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l--~~~-~~~~~~~~~  155 (330)
                      +.+++|||+.|.||++|..-.+....+..|.+   +.++.|.++||.++++  +.+...++...+  +.+ ...+++++.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LA--aa~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLA--AAGNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhh--hccCCeeEEEEccCCCCCceeEEeccC
Confidence            55679999999999999998888888888886   6899999999999554  233333333332  222 234566663


Q ss_pred             ---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEEcccCc-
Q psy682          156 ---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVHTTFGD-  225 (330)
Q Consensus       156 ---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~~G~-  225 (330)
                         .++.|-.||+.++ +|+.|+++|+ |++.. ...|..+.|...|  +  -+  +..+   ||-.+|.|++|++.-. 
T Consensus        84 kNVtaVgF~~dgrWMy-TgseDgt~kI-WdlR~-~~~qR~~~~~spVn~vvlhpnQteLi---s~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMY-TGSEDGTVKI-WDLRS-LSCQRNYQHNSPVNTVVLHPNQTELI---SGDQSGNIRVWDLGENS  157 (311)
T ss_pred             CceEEEEEeecCeEEE-ecCCCceEEE-EeccC-cccchhccCCCCcceEEecCCcceEE---eecCCCcEEEEEccCCc
Confidence               4788999999955 5669999999 99974 5566777888777  3  23  6666   9999999999987443 


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCe-----------------------------EEEEeeCCceeeeccCc
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGH-----------------------------IAAFTMNGNRLRHESHN  275 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~-----------------------------~~~~s~nG~~las~~~~  275 (330)
                      ..+.|-+-.+ -+|.+++.-|||..|+.+ ++|+                             -+.||+|+|.||+...+
T Consensus       158 c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  158 CTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            4555554333 478999999999999888 4665                             37788999999999888


Q ss_pred             cccccc
Q psy682          276 DNLQEL  281 (330)
Q Consensus       276 ~dVkEL  281 (330)
                      ..+|-.
T Consensus       237 ktv~iw  242 (311)
T KOG0315|consen  237 KTVKIW  242 (311)
T ss_pred             ceEEEE
Confidence            877755

>KOG0268|consensus

Probab=99.59  E-value=1.4e-14  Score=139.08  Aligned_cols=245  Identities=14%  Similarity=0.179  Sum_probs=161.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCCeeEeeeccc----ee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSPICHVTANTY----VT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~~~~~----~~   75 (330)
                      |||+.||.|||||+.+-..+.+|++|.+.|.++++.. +     .+++ |.+..|-.++.-  +|.+++-....    +.
T Consensus        83 aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~-----~~~tvgdDKtvK~wk~~--~~p~~tilg~s~~~gId  154 (433)
T KOG0268|consen   83 ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T-----SFFTVGDDKTVKQWKID--GPPLHTILGKSVYLGID  154 (433)
T ss_pred             hccccCceEEEEehhhhhhhheeecccCceeeEEecc-c-----ceEEecCCcceeeeecc--CCcceeeeccccccccc
Confidence            6899999999999999899999999999999999987 1     2344 444455444432  23333332222    22


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCCcccCC--CCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCcc-c
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAASIQSP--SYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQ-K  150 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~--~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~-~  150 (330)
                      .+...-+.||++.+  |.+|+.+-....+..  |.     +...++.|.|--.  |+++.++....+..-+.+.|+.. .
T Consensus       155 h~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~-----Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi  227 (433)
T KOG0268|consen  155 HHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGA-----DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI  227 (433)
T ss_pred             cccccccccccCce--eeecccccCCccceeecCC-----CceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence            22233346888888  799998654433322  33     2345788888777  55433433333333333555432 2


Q ss_pred             eeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEccc
Q psy682          151 LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       151 ~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      +..+.|.++++|++ +.+++|+.|..+-. ++... -+.++...||-..|+    ++  +..+   |||.|+||+|+..+
T Consensus       228 ~~mRTN~IswnPea-fnF~~a~ED~nlY~-~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv---sgsyDksIRIf~~~  302 (433)
T KOG0268|consen  228 LTMRTNTICWNPEA-FNFVAANEDHNLYT-YDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV---SGSYDKSIRIFPVN  302 (433)
T ss_pred             eeccccceecCccc-cceeecccccccee-hhhhhhcccchhhcccceeEEEeccCCCcchhc---cccccceEEEeecC
Confidence            23456888899955 77999999999887 77643 245777778877773    33  5555   99999999998764


Q ss_pred             CceeeecCCCCCC-CCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          224 GDLLRSLDPPSGF-ASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       224 G~ll~tL~~h~~~-~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      ..--|..- |... ..|.+|.+|-|.+.|+||| ++++.+|--+.
T Consensus       303 ~~~SRdiY-htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  303 HGHSRDIY-HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             CCcchhhh-hHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            32111111 1110 3699999999999999995 78999998664

>KOG0284|consensus

Probab=99.59  E-value=3e-15  Score=145.14  Aligned_cols=226  Identities=12%  Similarity=0.128  Sum_probs=169.9

Q ss_pred             CCceeEEEeCCCCCc-------------Ccc-----eeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCC
Q psy682           27 DSSVRSLALSHDQKY-------------SPM-----MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH   88 (330)
Q Consensus        27 ~~~V~svafSpdg~~-------------~~l-----~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~   88 (330)
                      ...|..|.+.|+|+.             +..     +....|++.|..++.|+|+..+                 +|++.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wm-----------------iSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWM-----------------ISGDK  158 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEE-----------------EEcCC
Confidence            347899999999887             221     1245899999999999999985                 99999


Q ss_pred             cceEEEeCCCCCCcccCCCCC-CCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eEEEEecC
Q psy682           89 QFAINRWNPDYAASIQSPSYA-ETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVD  163 (330)
Q Consensus        89 ~~tv~lW~~~~~~~~~~~~h~-~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spD  163 (330)
                      ++.||.|+++-+..+....|. +    .+..++|||+-. .+++|.++..++|.-.-..+ ...+.+|.   .|+.-.|.
T Consensus       159 gG~iKyWqpnmnnVk~~~ahh~e----aIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVKIIQAHHAE----AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             CceEEecccchhhhHHhhHhhhh----hhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCc
Confidence            999999999888877777665 5    455699997554 77766666555543222111 12345554   58888887


Q ss_pred             CCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe----HHHHHhhhccCCCcEEEEccc-CceeeecCCCCCCCC
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS----ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSGFAS  238 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS----t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~  238 (330)
                      --. +++|+.|+.||+ |+..+|..+-++.+|...|.+-    .- =|-.++|+|..||+.+.. =+.|+++++|..  .
T Consensus       234 kgL-iasgskDnlVKl-WDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--d  308 (464)
T KOG0284|consen  234 KGL-IASGSKDNLVKL-WDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--D  308 (464)
T ss_pred             cce-eEEccCCceeEe-ecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchh--h
Confidence            654 888889999999 9999999999999999999542    11 233399999999999875 778999999999  8


Q ss_pred             CcEEEeCCCcc-EEEEc-cCCeEEEEeeC------------------------CceeeeccCccccc
Q psy682          239 PESVVMSREGV-IVVNY-ERGHIAAFTMN------------------------GNRLRHESHNDNLQ  279 (330)
Q Consensus       239 v~~v~fS~dG~-~l~s~-~~~~~~~~s~n------------------------G~~las~~~~~dVk  279 (330)
                      |.+++.+|=-. ++++| .++.++.|...                        |.+|++...+.+++
T Consensus       309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r  375 (464)
T KOG0284|consen  309 VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR  375 (464)
T ss_pred             heeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCccee
Confidence            99999998644 44454 47776555544                        78888877666655

>KOG0292|consensus

Probab=99.59  E-value=2.7e-14  Score=148.67  Aligned_cols=213  Identities=13%  Similarity=0.109  Sum_probs=153.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCC---------CCc---------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD---------QKY---------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd---------g~~---------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      +||++|.+||+|+.++.+.+.||.||-+.|+.+.|.+.         .|+         +.+..++||.--||.-.|.|.
T Consensus        67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             EecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence            68999999999999999999999999999999999873         333         344557788888888888885


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccC---CCCCCCcc
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPT---SNNNAPVP  139 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s---~~~~~~~~  139 (330)
                      -..|                 ||||.|-||++|+..|-..++....           ++.-++......   -+.++. .
T Consensus       147 EDlI-----------------VSaSLDQTVRVWDisGLRkk~~~pg-----------~~e~~~~~~~~~~dLfg~~Da-V  197 (1202)
T KOG0292|consen  147 EDLI-----------------VSASLDQTVRVWDISGLRKKNKAPG-----------SLEDQMRGQQGNSDLFGQTDA-V  197 (1202)
T ss_pred             cceE-----------------EEecccceEEEEeecchhccCCCCC-----------CchhhhhccccchhhcCCcCe-e
Confidence            5543                 9999999999999966544332211           111111111000   000111 1


Q ss_pred             eeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccc--ccccccCCCCcE----EEe--HHHHHh
Q psy682          140 KRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA--LQEGKFDHPNRL----FSS--ISLAWK  208 (330)
Q Consensus       140 ~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~V----iaS--t~~lW~  208 (330)
                      .++       -+++|.   |-.+|.|.-.. |+||+.|+-+|+ |....-|  ...+..||.+-|    |..  -.+|  
T Consensus       198 VK~-------VLEGHDRGVNwaAfhpTlpl-iVSG~DDRqVKl-WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl--  266 (1202)
T KOG0292|consen  198 VKH-------VLEGHDRGVNWAAFHPTLPL-IVSGADDRQVKL-WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL--  266 (1202)
T ss_pred             eee-------eecccccccceEEecCCcce-EEecCCcceeeE-EEeccccceeehhhhcccCCcceEEecCccceeE--
Confidence            122       245554   56789998887 667778999999 9886544  477888998877    333  4455  


Q ss_pred             hhccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCCCccEEEEccC
Q psy682          209 NCQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVNYER  256 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~  256 (330)
                       |.|.|++|++|+.+ -+-+++++.-.+  +-+.|+--|.+...|.|-|
T Consensus       267 -SnsEDksirVwDm~kRt~v~tfrrend--RFW~laahP~lNLfAAgHD  312 (1202)
T KOG0292|consen  267 -SNSEDKSIRVWDMTKRTSVQTFRREND--RFWILAAHPELNLFAAGHD  312 (1202)
T ss_pred             -ecCCCccEEEEecccccceeeeeccCC--eEEEEEecCCcceeeeecC
Confidence             99999999999864 466888887666  8899999999999999833

>KOG0274|consensus

Probab=99.56  E-value=1.2e-14  Score=149.31  Aligned_cols=160  Identities=18%  Similarity=0.179  Sum_probs=126.5

Q ss_pred             eeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCC
Q psy682           47 STVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDP  125 (330)
Q Consensus        47 ~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~  125 (330)
                      +.||.+.|+.++|..-+..+                 +|++.|+|+++|+...+. ...+.||++               
T Consensus       245 l~GH~g~V~~l~~~~~~~~l-----------------vsgS~D~t~rvWd~~sg~C~~~l~gh~s---------------  292 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKL-----------------VSGSTDKTERVWDCSTGECTHSLQGHTS---------------  292 (537)
T ss_pred             ccCCCCCceeEEEecCCCEE-----------------EEEecCCcEEeEecCCCcEEEEecCCCc---------------
Confidence            45999999999999977764                 999999999999985543 222223431               


Q ss_pred             ceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE--e-
Q psy682          126 ILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS--S-  202 (330)
Q Consensus       126 ~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via--S-  202 (330)
                                                  ...|  ++-+. ..+++|++|.+||+ |++++|+.++++.||.+.|-.  - 
T Consensus       293 ----------------------------tv~~--~~~~~-~~~~sgs~D~tVkV-W~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  293 ----------------------------SVRC--LTIDP-FLLVSGSRDNTVKV-WDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             ----------------------------eEEE--EEccC-ceEeeccCCceEEE-EeccCcceEEEeccccccEEEEEec
Confidence                                        0122  23333 44777999999999 999999999999999999932  1 


Q ss_pred             -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc--eeeeccCcc
Q psy682          203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN--RLRHESHND  276 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~--~las~~~~~  276 (330)
                       ...+   |||.||+|++|+. +|+++++|+||.+  +|+++.+.+. ..++||+ |+++..|+++++  .+.++..|.
T Consensus       341 ~~~lv---sgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  341 EPLLV---SGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             CCEEE---EEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence             4444   9999999999965 8999999999999  9999999887 8999997 788999999988  666666665

>KOG1446|consensus

Probab=99.56  E-value=1.1e-13  Score=130.55  Aligned_cols=233  Identities=9%  Similarity=0.103  Sum_probs=171.2

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------------------CcceeeeecCccEEEEEeCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      ++++|.+++|++..+|++++++..+...|.-+.|-.....                    .-+.+++||.+.|.+++-+|
T Consensus        31 tss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP  110 (311)
T KOG1446|consen   31 TSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP  110 (311)
T ss_pred             EecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC
Confidence            5688999999999999999999999999999999776554                    22345789999999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc--
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP--  139 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~--  139 (330)
                      -...                 ..|++.|++|++|+..........--     ......+|.|.|.+.+.+.++ ..+.  
T Consensus       111 ~~d~-----------------FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfDp~GLifA~~~~~-~~IkLy  167 (311)
T KOG1446|consen  111 KDDT-----------------FLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFDPEGLIFALANGS-ELIKLY  167 (311)
T ss_pred             CCCe-----------------EEecccCCeEEeeEecCCCCceEEec-----CCCcceeECCCCcEEEEecCC-CeEEEE
Confidence            8875                 48999999999999964432222211     123467899999955432222 2332  


Q ss_pred             -eecc-CCCCccceeee------eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-------EEe--
Q psy682          140 -KRHL-GDNFSQKLRVR------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-------FSS--  202 (330)
Q Consensus       140 -~~~l-~~~~~~~~~~~------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-------iaS--  202 (330)
                       .|.. .+|+ +++.+.      .+.+.||||||+|+.+- ..+-+.+ .+--+|.+++++.+|...-       +.+  
T Consensus       168 D~Rs~dkgPF-~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~-lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  168 DLRSFDKGPF-TTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYL-LDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EecccCCCCc-eeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEE-EEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence             4444 4454 344433      25788999999988875 4666777 7777899999998887653       211  


Q ss_pred             HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682          203 ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                      ...+   +|+.||+|.+|+. +|+.+..++|+.. +.+.++.|.|--...|+++. .+..|-++
T Consensus       245 ~Fvl---~gs~dg~i~vw~~~tg~~v~~~~~~~~-~~~~~~~fnP~~~mf~sa~s-~l~fw~p~  303 (311)
T KOG1446|consen  245 KFVL---SGSDDGTIHVWNLETGKKVAVLRGPNG-GPVSCVRFNPRYAMFVSASS-NLVFWLPD  303 (311)
T ss_pred             cEEE---EecCCCcEEEEEcCCCcEeeEecCCCC-CCccccccCCceeeeeecCc-eEEEEecc
Confidence            4444   9999999999976 7999999999633 38999999999888888654 45666654

>KOG0306|consensus

Probab=99.56  E-value=7.3e-14  Score=143.54  Aligned_cols=246  Identities=17%  Similarity=0.170  Sum_probs=176.1

Q ss_pred             CCcEEEeeccccccc---------ceeecCCCceeEEEeCCCCCc------Ccceeee---------ecCccEEEEEeCC
Q psy682            6 KGIVEVWRTFNLALL---------YAFPSCDSSVRSLALSHDQKY------SPMMFST---------VLDDVCMSLKFPS   61 (330)
Q Consensus         6 d~~V~lW~~~~g~~l---------~tl~gH~~~V~svafSpdg~~------~~l~~~~---------~~~d~~~~v~Fs~   61 (330)
                      +++|-++.+......         .++.||+..|++++||.|...      .++.+..         ...+-+...+|-|
T Consensus       343 nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvp  422 (888)
T KOG0306|consen  343 NNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVP  422 (888)
T ss_pred             cCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecC
Confidence            566777766552222         457899999999999998776      2222211         2222445666777


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcc
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVP  139 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~  139 (330)
                      .+..|                 +.+...+.+.+.+.-... +.+.+.|.+    ...+++.+||++ .++++++.+.+.|
T Consensus       423 gd~~I-----------------v~G~k~Gel~vfdlaS~~l~Eti~AHdg----aIWsi~~~pD~~g~vT~saDktVkfW  481 (888)
T KOG0306|consen  423 GDRYI-----------------VLGTKNGELQVFDLASASLVETIRAHDG----AIWSISLSPDNKGFVTGSADKTVKFW  481 (888)
T ss_pred             CCceE-----------------EEeccCCceEEEEeehhhhhhhhhcccc----ceeeeeecCCCCceEEecCCcEEEEE
Confidence            77654                 677777778888875333 455557874    678899999999 7776777766665


Q ss_pred             eeccCCC--Ccc----------cee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----E
Q psy682          140 KRHLGDN--FSQ----------KLR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----S  201 (330)
Q Consensus       140 ~~~l~~~--~~~----------~~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----a  201 (330)
                      .-.+...  -.|          +++  -...|+++||||++ ++-|=-|+|+|+ +-+++-|+.-+|+||.=.|+    +
T Consensus       482 df~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-LaVsLLdnTVkV-yflDtlKFflsLYGHkLPV~smDIS  559 (888)
T KOG0306|consen  482 DFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-LAVSLLDNTVKV-YFLDTLKFFLSLYGHKLPVLSMDIS  559 (888)
T ss_pred             eEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-EEEEeccCeEEE-EEecceeeeeeecccccceeEEecc
Confidence            3333211  111          111  12369999999999 555668999999 99999999999999999984    2


Q ss_pred             --eHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCC-eEEE----------------
Q psy682          202 --SISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG-HIAA----------------  261 (330)
Q Consensus       202 --St~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~-~~~~----------------  261 (330)
                        |...+   +||.|++||+|-+ .|+.-++|-+|.+  +|.+|.|-|+-+...+++++ .+.-                
T Consensus       560 ~DSkliv---TgSADKnVKiWGLdFGDCHKS~fAHdD--Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~  634 (888)
T KOG0306|consen  560 PDSKLIV---TGSADKNVKIWGLDFGDCHKSFFAHDD--SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH  634 (888)
T ss_pred             CCcCeEE---eccCCCceEEeccccchhhhhhhcccC--ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch
Confidence              35555   8999999999965 6999999999999  99999999999999888744 3333                


Q ss_pred             -------EeeCCceeeeccCccccc
Q psy682          262 -------FTMNGNRLRHESHNDNLQ  279 (330)
Q Consensus       262 -------~s~nG~~las~~~~~dVk  279 (330)
                             -++||..+-|..++..++
T Consensus       635 ~ev~cLav~~~G~~vvs~shD~sIR  659 (888)
T KOG0306|consen  635 SEVWCLAVSPNGSFVVSSSHDKSIR  659 (888)
T ss_pred             heeeeeEEcCCCCeEEeccCCceeE
Confidence                   367887777776655444

>KOG0275|consensus

Probab=99.55  E-value=2.2e-14  Score=136.23  Aligned_cols=194  Identities=14%  Similarity=0.176  Sum_probs=139.1

Q ss_pred             CcccCCCcEEEeecccccccceee-cCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      |||+.||.||+|.+.+|+-++.|. +|+..|.++.||.|+..                  ..++.+.||..-|.-..|++
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~  358 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD  358 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence            789999999999999999999996 99999999999999987                  22344679999999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-C-CCCCCCCCCCCC-ccccCCCc-eeccCCCCCCC
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-P-SYAETPGSPPGN-LPLTLDPI-LTHPTSNNNAP  137 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~-~h~~~~~~~~~~-l~fs~D~~-l~~~s~~~~~~  137 (330)
                      ||..|                 +||+.|+|||+|+...++...+ . ..++   -++++ +.|..+|. +.++  +-++.
T Consensus       359 dG~~i-----------------isaSsDgtvkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVC--Nrsnt  416 (508)
T KOG0275|consen  359 DGHHI-----------------ISASSDGTVKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVC--NRSNT  416 (508)
T ss_pred             CCCeE-----------------EEecCCccEEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEE--cCCCe
Confidence            99975                 8889999999999987774333 2 2222   12333 34444554 3332  12222


Q ss_pred             cceeccCCCCcccee-----ee-eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e--HHH
Q psy682          138 VPKRHLGDNFSQKLR-----VR-HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S--ISL  205 (330)
Q Consensus       138 ~~~~~l~~~~~~~~~-----~~-~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S--t~~  205 (330)
                      +..-.+.+..-+++.     +. -.+-.+||-|.+|+..| .|+.+-+ |+..+|+|..++.-|...||  +  +  ..+
T Consensus       417 v~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYC-F~~~sG~LE~tl~VhEkdvIGl~HHPHqNll  494 (508)
T KOG0275|consen  417 VYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYC-FSVLSGKLERTLPVHEKDVIGLTHHPHQNLL  494 (508)
T ss_pred             EEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEE-EEeecCceeeeeecccccccccccCcccchh
Confidence            222222222111111     00 12445899999988777 7999999 99999999999999988874  2  1  444


Q ss_pred             HHhhhccCCCcEEEEc
Q psy682          206 AWKNCQRDTSDVKVHT  221 (330)
Q Consensus       206 lW~~SgS~Dgtvkl~~  221 (330)
                      +   |=|.||+.|||.
T Consensus       495 A---sYsEDgllKLWk  507 (508)
T KOG0275|consen  495 A---SYSEDGLLKLWK  507 (508)
T ss_pred             h---hhcccchhhhcC
Confidence            4   778999999995

>KOG2096|consensus

Probab=99.55  E-value=1.1e-13  Score=131.35  Aligned_cols=245  Identities=15%  Similarity=0.100  Sum_probs=157.0

Q ss_pred             cceeecCCCceeEEEeCCCCCc-------Cccee---------------eeecCccEEEEEeCCCCCeeEeeeccc----
Q psy682           20 LYAFPSCDSSVRSLALSHDQKY-------SPMMF---------------STVLDDVCMSLKFPSNSPICHVTANTY----   73 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~~-------~~l~~---------------~~~~~d~~~~v~Fs~~~~v~~~~~~~~----   73 (330)
                      +.+|+||.+.|.+++||+||+.       ..+..               ....-|--..|.|+||-.-+.++....    
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4458999999999999999998       11100               111122235678998866555543211    


Q ss_pred             ----------------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682           74 ----------------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL  119 (330)
Q Consensus        74 ----------------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l  119 (330)
                                                        ......+.+++||+.|.+|-||+..|..+.+.    +.......--
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i----dtnq~~n~~a  234 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI----DTNQSSNYDA  234 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee----ccccccccce
Confidence                                              13445788999999999999999986544443    3333456678


Q ss_pred             cccCCCc-eeccCCCCCCCcceeccC--CCCcc-----ceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccc---
Q psy682          120 PLTLDPI-LTHPTSNNNAPVPKRHLG--DNFSQ-----KLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMY---  185 (330)
Q Consensus       120 ~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~~~-----~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~---  185 (330)
                      ++||||+ ++++.-..++++|..-.+  +.+.+     .+.+|+   ..++||++++. +++.|.|+++|+ |+++-   
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wri-wdtdVrY~  312 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRI-WDTDVRYE  312 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEE-eeccceEe
Confidence            9999999 666555566666633322  22211     255664   47889999999 667789999999 99851   


Q ss_pred             -c---cccccc--cCCCC---cE---EEe--HHHHHhhhccCCCcEEEE-cccCceeeecCC-CCCCCCCcEEEeCCCcc
Q psy682          186 -L---ALQEGK--FDHPN---RL---FSS--ISLAWKNCQRDTSDVKVH-TTFGDLLRSLDP-PSGFASPESVVMSREGV  249 (330)
Q Consensus       186 -g---~l~~~l--~gH~d---~V---iaS--t~~lW~~SgS~Dgtvkl~-~~~G~ll~tL~~-h~~~~~v~~v~fS~dG~  249 (330)
                       +   +++++.  .-|..   .+   +.+  .+.    ..|...+++++ +.+|+-+-+|+- |++  .+.+|+|++||+
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~l----A~s~gs~l~~~~se~g~~~~~~e~~h~~--~Is~is~~~~g~  386 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSL----AVSFGSDLKVFASEDGKDYPELEDIHST--TISSISYSSDGK  386 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEE----EeecCCceEEEEcccCccchhHHHhhcC--ceeeEEecCCCc
Confidence             1   122211  11111   11   111  111    34445567776 567888888875 666  899999999999


Q ss_pred             EEEEccCCeEEEEeeCCceeeeccCcccccccc
Q psy682          250 IVVNYERGHIAAFTMNGNRLRHESHNDNLQELI  282 (330)
Q Consensus       250 ~l~s~~~~~~~~~s~nG~~las~~~~~dVkELi  282 (330)
                      .+|+.++..+.++-      .+...+..|++|-
T Consensus       387 ~~atcGdr~vrv~~------ntpg~~~~V~~~~  413 (420)
T KOG2096|consen  387 YIATCGDRYVRVIR------NTPGWHSRVVKLN  413 (420)
T ss_pred             EEeeecceeeeeec------CCCchhhHHHHhh
Confidence            99999888776654      1223455666653

>KOG0973|consensus

Probab=99.55  E-value=6.3e-14  Score=148.35  Aligned_cols=266  Identities=13%  Similarity=0.117  Sum_probs=170.4

Q ss_pred             Cccc--CCCcEEEeeccc------------ccccceeecCCCceeEEEeCCCCCcCcceeeeecCcc-EEEEEeCC--CC
Q psy682            1 MSGG--DKGIVEVWRTFN------------LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDV-CMSLKFPS--NS   63 (330)
Q Consensus         1 asgs--~d~~V~lW~~~~------------g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~-~~~v~Fs~--~~   63 (330)
                      |||+  .|+.+++|+...            -+++.+..-|.+.|.+|-|||||++    +..|.+|. ++.....+  -+
T Consensus        29 aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~----lAsGSDD~~v~iW~~~~~~~~  104 (942)
T KOG0973|consen   29 ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY----LASGSDDRLVMIWERAEIGSG  104 (942)
T ss_pred             ecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe----EeeccCcceEEEeeecccCCc
Confidence            6788  899999997431            2567788999999999999999999    44444443 23333331  00


Q ss_pred             Cee---------------Eee-ec----cceeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCcccc
Q psy682           64 PIC---------------HVT-AN----TYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLT  122 (330)
Q Consensus        64 ~v~---------------~~~-~~----~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs  122 (330)
                      .+.               .+- .+    ..+--+++....||.+.|++|.+||.. ...+..+.||+.    .|+.++|-
T Consensus       105 ~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s----~VKGvs~D  180 (942)
T KOG0973|consen  105 TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS----LVKGVSWD  180 (942)
T ss_pred             ccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc----cccceEEC
Confidence            000               000 00    002233445557999999999999976 444666679984    77789999


Q ss_pred             CCCc-eeccCCCCCCCcceeccCC---------CCcccee-eeeeEEEEecCCCeEEEeeccC---CeEEEeeecccccc
Q psy682          123 LDPI-LTHPTSNNNAPVPKRHLGD---------NFSQKLR-VRHNCFVTTVDSRFLLACGFWD---NSFREPFTTMYLAL  188 (330)
Q Consensus       123 ~D~~-l~~~s~~~~~~~~~~~l~~---------~~~~~~~-~~~~~~~~spDg~~i~asg~~D---~tirl~w~~~~g~l  188 (330)
                      |=|+ +|+.+.  +..+..|++.+         ||.+... -+..-...||||++|.+...-.   .++.| .+.++.+.
T Consensus       181 P~Gky~ASqsd--Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I-ieR~tWk~  257 (942)
T KOG0973|consen  181 PIGKYFASQSD--DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI-IERGTWKV  257 (942)
T ss_pred             CccCeeeeecC--CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE-EecCCcee
Confidence            9999 555333  44444444332         3321111 1113455799999965554332   35788 88888888


Q ss_pred             cccccCCCCcEE-E---e---------------H----HHHHhhhccCCCcEEEEcc-cCceeeecCCCCC-CCCCcEEE
Q psy682          189 QEGKFDHPNRLF-S---S---------------I----SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSG-FASPESVV  243 (330)
Q Consensus       189 ~~~l~gH~d~Vi-a---S---------------t----~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~-~~~v~~v~  243 (330)
                      -..|.||...+. +   .               .    +.+   +||.|+++-||+. .=+.|  |..|+= ..+|..++
T Consensus       258 ~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A---vgSqDrSlSVW~T~~~RPl--~vi~~lf~~SI~Dms  332 (942)
T KOG0973|consen  258 DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA---VGSQDRSLSVWNTALPRPL--FVIHNLFNKSIVDMS  332 (942)
T ss_pred             eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE---EecCCccEEEEecCCCCch--hhhhhhhcCceeeee
Confidence            889999999871 1   0               1    444   8999999999975 22222  222221 14899999


Q ss_pred             eCCCccEEEEcc-CCeEEEEeeCCceeeeccCcccccccc
Q psy682          244 MSREGVIVVNYE-RGHIAAFTMNGNRLRHESHNDNLQELI  282 (330)
Q Consensus       244 fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~~~dVkELi  282 (330)
                      +||||..|...| ||++..+...-+-|.-.-.++...|+.
T Consensus       333 WspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~~~~  372 (942)
T KOG0973|consen  333 WSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEISELD  372 (942)
T ss_pred             EcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhchhh
Confidence            999999888776 888888776655444444444444443

>KOG0288|consensus

Probab=99.53  E-value=3.8e-14  Score=137.70  Aligned_cols=204  Identities=14%  Similarity=0.176  Sum_probs=134.6

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +++.|+.+++|++++++++.||.||++.|.++.|.-.-..                                        
T Consensus       236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~----------------------------------------  275 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR----------------------------------------  275 (459)
T ss_pred             eecCCCceeeeeccchhhhhhhcccccceeeehhhccccc----------------------------------------
Confidence            5789999999999999999999999999999999763221                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceec-----cCCCCCCCcceecc-CCCCcccee--e
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTH-----PTSNNNAPVPKRHL-GDNFSQKLR--V  153 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~-----~s~~~~~~~~~~~l-~~~~~~~~~--~  153 (330)
                       .||++.|.|||+|+++......+            .|+.|.+--+..     .|+-.+.+++-|.. +....+.++  +
T Consensus       276 -vVsgs~DRtiK~WDl~k~~C~kt------------~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg  342 (459)
T KOG0288|consen  276 -VVSGSADRTIKLWDLQKAYCSKT------------VLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG  342 (459)
T ss_pred             -eeeccccchhhhhhhhhhheecc------------ccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc
Confidence             38999999999999965432222            122222222221     01111122222221 111111222  2


Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC-----CC--cE-EEe--HHHHHhhhccCCCcEEEEcc-
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH-----PN--RL-FSS--ISLAWKNCQRDTSDVKVHTT-  222 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH-----~d--~V-iaS--t~~lW~~SgS~Dgtvkl~~~-  222 (330)
                      ...++..++||.-|++| +.|.++++ .++.+-...+++..-     .|  +| |++  -..+   .||.||.|+||++ 
T Consensus       343 ~vtSl~ls~~g~~lLss-sRDdtl~v-iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva---AGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  343 RVTSLDLSMDGLELLSS-SRDDTLKV-IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA---AGSADGSVYIWSVF  417 (459)
T ss_pred             ceeeEeeccCCeEEeee-cCCCceee-eecccccEEEEeeccccccccccceeEECCCCceee---eccCCCcEEEEEcc
Confidence            23577889999998888 59999999 888654444433221     11  22 443  2222   7999999999987 


Q ss_pred             cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCC-eEEEEe
Q psy682          223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG-HIAAFT  263 (330)
Q Consensus       223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~-~~~~~s  263 (330)
                      +|++-..|........|.+++|+|-|.-|++++++ .+.+|+
T Consensus       418 tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  418 TGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            68888888876553469999999999999999844 455553

>KOG0310|consensus

Probab=99.53  E-value=1e-13  Score=136.77  Aligned_cols=203  Identities=15%  Similarity=0.166  Sum_probs=154.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |.|++.|.|++.|.++---++.+.+|+..|..+-|+|++.+                                       
T Consensus        84 aaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t---------------------------------------  124 (487)
T KOG0310|consen   84 AAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNT---------------------------------------  124 (487)
T ss_pred             EccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCe---------------------------------------
Confidence            57899999999998776678889999999999999998776                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           81 VVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                       ..++|+.|+.+|.|+.++.... .+.||+    |-+.+.+++|-.-  ++++++++...+|.-+..+  ....+...  
T Consensus       125 -~l~s~sDd~v~k~~d~s~a~v~~~l~~ht----DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~  197 (487)
T KOG0310|consen  125 -MLVSGSDDKVVKYWDLSTAYVQAELSGHT----DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGC  197 (487)
T ss_pred             -EEEecCCCceEEEEEcCCcEEEEEecCCc----ceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCCC
Confidence             5699999999999999877753 456998    4677788887654  6666677766665333322  12222222  


Q ss_pred             --eEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc-cCc
Q psy682          156 --NCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-FGD  225 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-~G~  225 (330)
                        ..+.+-|.|..|++||  -+.+|+ |++-+ |+++...+.|.-.|    +++  +..+   |||-||-||+++. +=+
T Consensus       198 pVe~vl~lpsgs~iasAg--Gn~vkV-WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl---S~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAG--GNSVKV-WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL---SGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             ceeeEEEcCCCCEEEEcC--CCeEEE-EEecCCceehhhhhcccceEEEEEeecCCceEe---ecccccceEEEEccceE
Confidence              3566788888877776  589999 99974 56777777688888    555  7777   9999999999974 456


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCe
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGH  258 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~  258 (330)
                      .+.+++=+   ++|-++++|||++.+|-| ++|.
T Consensus       272 vv~s~~~~---~pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  272 VVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             EEEeeecc---cceeeEEecCCCceEEEecccce
Confidence            77776543   379999999999999999 4554

>KOG0283|consensus

Probab=99.51  E-value=1.2e-13  Score=143.07  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe---HHHHHhhhccCCCcEEEEcccCceeee
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS---ISLAWKNCQRDTSDVKVHTTFGDLLRS  229 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~~G~ll~t  229 (330)
                      .++-|- +++||++ |-|+|+|| |.+..-+.+ ..|.|.|.|    |.+   ---|   |||-||.|+||....+-+-.
T Consensus       374 DlSWSK-n~fLLSS-SMDKTVRL-Wh~~~~~CL-~~F~HndfVTcVaFnPvDDryFi---SGSLD~KvRiWsI~d~~Vv~  446 (712)
T KOG0283|consen  374 DLSWSK-NNFLLSS-SMDKTVRL-WHPGRKECL-KVFSHNDFVTCVAFNPVDDRYFI---SGSLDGKVRLWSISDKKVVD  446 (712)
T ss_pred             eccccc-CCeeEec-cccccEEe-ecCCCccee-eEEecCCeeEEEEecccCCCcEe---ecccccceEEeecCcCeeEe
Confidence            344454 4476765 58999999 999866666 467999988    223   1112   99999999999876554433


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeec
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~  272 (330)
                      -..-.+  .|++|+|+|||+..+-|. +|.++.|...|..+.+-
T Consensus       447 W~Dl~~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  447 WNDLRD--LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             ehhhhh--hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            222224  799999999999999997 99999999999887554

>KOG0289|consensus

Probab=99.51  E-value=2.8e-13  Score=132.47  Aligned_cols=211  Identities=14%  Similarity=0.103  Sum_probs=153.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ++|+.|+++-+.|...++.+.+|+||+-.|.+|.|+|+...                                       
T Consensus       235 lTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~---------------------------------------  275 (506)
T KOG0289|consen  235 LTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT---------------------------------------  275 (506)
T ss_pred             eecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh---------------------------------------
Confidence            47999999999999999999999999999999999997555                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeee-----
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR-----  154 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~-----  154 (330)
                        +++++.|..|++|...... .....-|.+    ++..+...|.|.|..  +.++.+.|....-..- ..+...     
T Consensus       276 --v~~aSad~~i~vws~~~~s~~~~~~~h~~----~V~~ls~h~tgeYll--sAs~d~~w~Fsd~~~g-~~lt~vs~~~s  346 (506)
T KOG0289|consen  276 --VITASADEIIRVWSVPLSSEPTSSRPHEE----PVTGLSLHPTGEYLL--SASNDGTWAFSDISSG-SQLTVVSDETS  346 (506)
T ss_pred             --eeecCCcceEEeeccccccCccccccccc----cceeeeeccCCcEEE--EecCCceEEEEEccCC-cEEEEEeeccc
Confidence              4677777789999975443 223337764    677899999999554  2333444422211100 111111     


Q ss_pred             ---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-eHHHHHhhhccCCCcEEEEcc-cCcee
Q psy682          155 ---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-SISLAWKNCQRDTSDVKVHTT-FGDLL  227 (330)
Q Consensus       155 ---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll  227 (330)
                         -.+.+|.||| .|+++|..|+-+|+ |++..+.-...+-||...|  |+ +----|-..+++|+.||||++ .-+..
T Consensus       347 ~v~~ts~~fHpDg-Lifgtgt~d~~vki-wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  347 DVEYTSAAFHPDG-LIFGTGTPDGVVKI-WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF  424 (506)
T ss_pred             cceeEEeeEcCCc-eEEeccCCCceEEE-EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence               2478899999 56999999999999 9999888888899999998  22 211112227889999999986 45667


Q ss_pred             eecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          228 RSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                      +|+.-.+.+ .|.++.|-+-|+.|+.++ +-.++.|
T Consensus       425 kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  425 KTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             ceeeccccc-cceeEEEcCCCCeEEeecceeEEEEE
Confidence            777766553 799999999999999985 3344444

>KOG0294|consensus

Probab=99.50  E-value=4.4e-13  Score=126.91  Aligned_cols=228  Identities=13%  Similarity=0.093  Sum_probs=166.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ||||.|.+|+|+|+....++.++..|++.|+++.|.++-..+                      .               
T Consensus        57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~s----------------------h---------------   99 (362)
T KOG0294|consen   57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKS----------------------H---------------   99 (362)
T ss_pred             eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchh----------------------h---------------
Confidence            789999999999999989999999999999999999864320                      1               


Q ss_pred             EEEEEcCCcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC---Cccceeeeee
Q psy682           81 VVTVTANHQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---FSQKLRVRHN  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~---~~~~~~~~~~  156 (330)
                        +.||+.|+-|-+|+... ..+.++.+|.+.    ++-+++.|-+++|. |-+++..++.|.|-..   +--.+.-...
T Consensus       100 --LlS~sdDG~i~iw~~~~W~~~~slK~H~~~----Vt~lsiHPS~KLAL-sVg~D~~lr~WNLV~Gr~a~v~~L~~~at  172 (362)
T KOG0294|consen  100 --LLSGSDDGHIIIWRVGSWELLKSLKAHKGQ----VTDLSIHPSGKLAL-SVGGDQVLRTWNLVRGRVAFVLNLKNKAT  172 (362)
T ss_pred             --eeeecCCCcEEEEEcCCeEEeeeecccccc----cceeEecCCCceEE-EEcCCceeeeehhhcCccceeeccCCcce
Confidence              36777788899999853 346666799864    66699999999885 4455555666766221   1111111123


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe-----HHHHHhhhccCCCcEEEEccc-Cceeeec
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS-----ISLAWKNCQRDTSDVKVHTTF-GDLLRSL  230 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS-----t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL  230 (330)
                      .+.|+|.|.+++..+  -+.|-+ |.+++.++...+.--....++.     ++.    .|.+|++|++|+.+ +..+..+
T Consensus       173 ~v~w~~~Gd~F~v~~--~~~i~i-~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~----vG~d~~~i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  173 LVSWSPQGDHFVVSG--RNKIDI-YQLDNASVFREIENPKRILCATFLDGSELL----VGGDNEWISLKDTDSDTPLTEF  245 (362)
T ss_pred             eeEEcCCCCEEEEEe--ccEEEE-EecccHhHhhhhhccccceeeeecCCceEE----EecCCceEEEeccCCCccceee
Confidence            588999999856655  355777 9999888776665543333332     333    68999999999775 8899999


Q ss_pred             CCCCCCCCCcEEEe--CCCccEEEEc-cCCeEEEEeeCCc------eeeeccCccccccc
Q psy682          231 DPPSGFASPESVVM--SREGVIVVNY-ERGHIAAFTMNGN------RLRHESHNDNLQEL  281 (330)
Q Consensus       231 ~~h~~~~~v~~v~f--S~dG~~l~s~-~~~~~~~~s~nG~------~las~~~~~dVkEL  281 (330)
                      .+|.+  +|-.+.+  -|++.+|+++ |+|.|+.|.++=.      +|+......++.||
T Consensus       246 ~AH~~--RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl  303 (362)
T KOG0294|consen  246 LAHEN--RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCL  303 (362)
T ss_pred             ecchh--heeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCcccee
Confidence            99999  9999984  3889999999 5999999998866      55555444444443

>KOG0296|consensus

Probab=99.50  E-value=3.9e-13  Score=129.12  Aligned_cols=242  Identities=10%  Similarity=0.030  Sum_probs=166.7

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      .-+.+|..|.+.|.+|+.+|+..+                  ..+...++|.|.|..+.||.+|..+             
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlL-------------  121 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLL-------------  121 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEE-------------
Confidence            346789999999999999997666                  1133467999999999999999975             


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeee--
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH--  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~--  155 (330)
                          ||++.++-|++|....+...-..-+  .+.+ .-=+.-.|-+. +++  ++.+-.+|.|++.. -..+.+.+|.  
T Consensus       122 ----ATGdmsG~v~v~~~stg~~~~~~~~--e~~d-ieWl~WHp~a~illA--G~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  122 ----ATGDMSGKVLVFKVSTGGEQWKLDQ--EVED-IEWLKWHPRAHILLA--GSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ----EecCCCccEEEEEcccCceEEEeec--ccCc-eEEEEecccccEEEe--ecCCCcEEEEECCCcceeeEecCCCCC
Confidence                9999999999999875542221110  0011 11233344444 332  23333467888765 4455666665  


Q ss_pred             -eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC------CC---------------CcE--EE---e------
Q psy682          156 -NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD------HP---------------NRL--FS---S------  202 (330)
Q Consensus       156 -~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g------H~---------------d~V--ia---S------  202 (330)
                       .|=.|.||||. +.+||.|+|||+ |+..+|..+..+.+      |.               +.+  ++   +      
T Consensus       193 ct~G~f~pdGKr-~~tgy~dgti~~-Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  193 CTCGEFIPDGKR-ILTGYDDGTIIV-WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             cccccccCCCce-EEEEecCceEEE-EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence             34558999999 778999999999 99999976655541      11               110  00   0      


Q ss_pred             --------------------------HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccC
Q psy682          203 --------------------------ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYER  256 (330)
Q Consensus       203 --------------------------t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~  256 (330)
                                                ++.|-- +||.||||.||+..-.-+|..-.|+.  .|..+.|-++-.++++..+
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A-~G~vdG~i~iyD~a~~~~R~~c~he~--~V~~l~w~~t~~l~t~c~~  347 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAA-CGSVDGTIAIYDLAASTLRHICEHED--GVTKLKWLNTDYLLTACAN  347 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhh-cccccceEEEEecccchhheeccCCC--ceEEEEEcCcchheeeccC
Confidence                                      111100 89999999999988777888888888  8999999995555555689


Q ss_pred             CeEEEE-eeCCceeeeccCccccccccccccchh
Q psy682          257 GHIAAF-TMNGNRLRHESHNDNLQELIPELFFLP  289 (330)
Q Consensus       257 ~~~~~~-s~nG~~las~~~~~dVkELipef~~~p  289 (330)
                      +.++.| ..-|+++-....|.   +=|-+|-+.|
T Consensus       348 g~v~~wDaRtG~l~~~y~GH~---~~Il~f~ls~  378 (399)
T KOG0296|consen  348 GKVRQWDARTGQLKFTYTGHQ---MGILDFALSP  378 (399)
T ss_pred             ceEEeeeccccceEEEEecCc---hheeEEEEcC
Confidence            999999 56788888887664   3334555555

>KOG0305|consensus

Probab=99.48  E-value=7.7e-13  Score=133.33  Aligned_cols=210  Identities=13%  Similarity=0.033  Sum_probs=161.6

Q ss_pred             CcccCCCcEEEeecccccccceeec-CCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPS-CDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~g-H~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      |.|-.+|+|.|||..+.+.+.++.+ |...|-++|.+..                                         
T Consensus       233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-----------------------------------------  271 (484)
T KOG0305|consen  233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-----------------------------------------  271 (484)
T ss_pred             EEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-----------------------------------------
Confidence            4577899999999999899999999 9999999999841                                         


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Cccceeeee-
Q psy682           80 SVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLRVRH-  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~~~~-  155 (330)
                        +..++++++.|..++..-..  ..+..+|...|+    -+.+++|+.+.+ |+++++.+..|....+ ...++..|. 
T Consensus       272 --~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVC----gLkws~d~~~lA-SGgnDN~~~Iwd~~~~~p~~~~~~H~a  344 (484)
T KOG0305|consen  272 --VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVC----GLKWSPDGNQLA-SGGNDNVVFIWDGLSPEPKFTFTEHTA  344 (484)
T ss_pred             --eEEEecCCCcEEEEEEecchhhhhhhhcccceee----eeEECCCCCeec-cCCCccceEeccCCCccccEEEeccce
Confidence              35889999999999976443  223568986544    599999999552 4777777777775221 122334443 


Q ss_pred             --eEEEEecCCCeEEEe--eccCCeEEEeeecccccccccccCCCCcE----------EEeHHHHHhhhccCCCcEEEEc
Q psy682          156 --NCFVTTVDSRFLLAC--GFWDNSFREPFTTMYLALQEGKFDHPNRL----------FSSISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       156 --~~~~~spDg~~i~as--g~~D~tirl~w~~~~g~l~~~l~gH~d~V----------iaSt~~lW~~SgS~Dgtvkl~~  221 (330)
                        .+++++|=.+-|+|+  |+.|+.||+ |++.+|+.++.+....-+-          |++|      -|=.++-|.||.
T Consensus       345 AVKA~awcP~q~~lLAsGGGs~D~~i~f-wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st------hG~s~n~i~lw~  417 (484)
T KOG0305|consen  345 AVKALAWCPWQSGLLATGGGSADRCIKF-WNTNTGARIDSVDTGSQVCSLIWSKKYKELLST------HGYSENQITLWK  417 (484)
T ss_pred             eeeEeeeCCCccCceEEcCCCcccEEEE-EEcCCCcEecccccCCceeeEEEcCCCCEEEEe------cCCCCCcEEEEe
Confidence              478889866555655  478999999 9999999998887766532          2222      355677899997


Q ss_pred             c-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCc
Q psy682          222 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN  267 (330)
Q Consensus       222 ~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~  267 (330)
                      . +=+++..|.||..  +|..+++||||..||+| +|.+++.|..-+.
T Consensus       418 ~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  418 YPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            5 6788999999999  99999999999999999 5999999987775

>KOG0310|consensus

Probab=99.48  E-value=2.2e-13  Score=134.53  Aligned_cols=205  Identities=18%  Similarity=0.187  Sum_probs=144.5

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCC----CCCc--------------CcceeeeecCccEEEEEeCCCCCeeEee
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSH----DQKY--------------SPMMFSTVLDDVCMSLKFPSNSPICHVT   69 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSp----dg~~--------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~   69 (330)
                      .++-|+..+-.   ...--.+.|.+++|||    |.-.              .+.+.+.-=.+.+.++.|=+||.++   
T Consensus        10 e~~~w~~~~~~---~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Ll---   83 (487)
T KOG0310|consen   10 EIRYWRQETFP---PVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLL---   83 (487)
T ss_pred             cchhhhhhccc---ccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEE---
Confidence            45667553311   1233446899999999    4333              1112222335677888888888875   


Q ss_pred             eccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc
Q psy682           70 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ  149 (330)
Q Consensus        70 ~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~  149 (330)
                                    |.++..+-|++.+...                                     ..+.|.+..+-  
T Consensus        84 --------------aaGD~sG~V~vfD~k~-------------------------------------r~iLR~~~ah~--  110 (487)
T KOG0310|consen   84 --------------AAGDESGHVKVFDMKS-------------------------------------RVILRQLYAHQ--  110 (487)
T ss_pred             --------------EccCCcCcEEEecccc-------------------------------------HHHHHHHhhcc--
Confidence                          8888888899988521                                     01223322211  


Q ss_pred             ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe---HHHHHhhhccCCCcEEEEcc
Q psy682          150 KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS---ISLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       150 ~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~  222 (330)
                       .++  +..-|+|+...++++|+-|+.+|+ |++.++..+-.+.||.|.|    +.+   -+.+   |||.||+||+|+.
T Consensus       111 -apv--~~~~f~~~d~t~l~s~sDd~v~k~-~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv---tGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  111 -APV--HVTKFSPQDNTMLVSGSDDKVVKY-WDLSTAYVQAELSGHTDYVRCGDISPANDHIVV---TGSYDGKVRLWDT  183 (487)
T ss_pred             -Cce--eEEEecccCCeEEEecCCCceEEE-EEcCCcEEEEEecCCcceeEeeccccCCCeEEE---ecCCCceEEEEEe
Confidence             122  344589998899999999999999 9998887766999999999    333   2334   9999999999975


Q ss_pred             --cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC--Cceeeecc-Cccccccc
Q psy682          223 --FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN--GNRLRHES-HNDNLQEL  281 (330)
Q Consensus       223 --~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n--G~~las~~-~~~dVkEL  281 (330)
                        .+..+.+|.+ ..  +|.+|.|-|.|.++|+++-..+..|..-  |+++.+.. ++..|.||
T Consensus       184 R~~~~~v~elnh-g~--pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  184 RSLTSRVVELNH-GC--PVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             ccCCceeEEecC-CC--ceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEE
Confidence              3567778864 33  8999999999999999999999999665  55556665 66777777

>KOG1539|consensus

Probab=99.47  E-value=4.1e-12  Score=131.96  Aligned_cols=262  Identities=13%  Similarity=0.147  Sum_probs=175.7

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCC----------CCCc--------CcceeeeecCccEEEEEeCCCCC
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH----------DQKY--------SPMMFSTVLDDVCMSLKFPSNSP   64 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp----------dg~~--------~~l~~~~~~~d~~~~v~Fs~~~~   64 (330)
                      |+..|.++|||+.+++.+.+|+++.+.|+++-=||          +|++        .-+|.+......|.++.|.-||+
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence            67889999999999999999999999999998888          4444        33444554457889999998876


Q ss_pred             eeEeeeccc---------------------------eeccCCcEEEEEcCCcceEEEeCCCCCC-----cccCCCCCCCC
Q psy682           65 ICHVTANTY---------------------------VTLHMPSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETP  112 (330)
Q Consensus        65 v~~~~~~~~---------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~  112 (330)
                      -+.++++..                           .++-+..-|.+|++.|+..|.|-.|.+.     ++.-.||++  
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~--  335 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA--  335 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC--
Confidence            665555432                           2444555577888999999999887322     334459985  


Q ss_pred             CCCCCCcccc-CCCc-eeccCCCCCCC--------------c-----c--eeccCCC-----------------------
Q psy682          113 GSPPGNLPLT-LDPI-LTHPTSNNNAP--------------V-----P--KRHLGDN-----------------------  146 (330)
Q Consensus       113 ~~~~~~l~fs-~D~~-l~~~s~~~~~~--------------~-----~--~~~l~~~-----------------------  146 (330)
                        |+.|+.|- ..+. +.+++.+.+-.              .     .  ++.+...                       
T Consensus       336 --Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N  413 (910)
T KOG1539|consen  336 --PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN  413 (910)
T ss_pred             --CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence              56666663 3333 22211111000              0     0  0010000                       


Q ss_pred             -------------------------Cccc----eeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc---C
Q psy682          147 -------------------------FSQK----LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF---D  194 (330)
Q Consensus       147 -------------------------~~~~----~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~---g  194 (330)
                                               +...    ......++++|+=|.+ ..-||+-++|-+ +++++|.....+.   .
T Consensus       414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~-fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF-VFIGYSKGTIDR-FNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce-EEEeccCCeEEE-EEcccCeeecccccCcc
Confidence                                     0000    1122347788888988 555889999999 9999888877773   7


Q ss_pred             CCCcE--EEe----HHHHHhhhccCCCcEEEEccc------------------------------------------Cce
Q psy682          195 HPNRL--FSS----ISLAWKNCQRDTSDVKVHTTF------------------------------------------GDL  226 (330)
Q Consensus       195 H~d~V--iaS----t~~lW~~SgS~Dgtvkl~~~~------------------------------------------G~l  226 (330)
                      |...|  ++.    +..+   |++.||-+|.|+-.                                          -+.
T Consensus       492 h~~~V~gla~D~~n~~~v---sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLV---SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccCceeEEEecCCCceEE---EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            88877  333    3333   77778888877632                                          234


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe----------------------EEEEeeCCceeeeccCc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE-RGH----------------------IAAFTMNGNRLRHESHN  275 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~----------------------~~~~s~nG~~las~~~~  275 (330)
                      +|.|.||++  .++..+|||||+.|++++ |++                      -..|+|||..||+...+
T Consensus       569 vR~f~gh~n--ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  569 VREFWGHGN--RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             hHHhhcccc--ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence            467779999  999999999999999997 454                      36677888888887654

>KOG0293|consensus

Probab=99.47  E-value=1.4e-12  Score=127.17  Aligned_cols=233  Identities=10%  Similarity=0.059  Sum_probs=160.3

Q ss_pred             cccceeecCCCceeEEEeCCCCCc---------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY---------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~---------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      +..++|..|.+.||=+.||++|++                     ....+..+|.+.|.-+.||||...+          
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL----------  284 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL----------  284 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE----------
Confidence            456678999999999999999999                     1223355888899999999998875          


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee--
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV--  153 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~--  153 (330)
                             ++++-+-.+.+|+.+.+.++..-+++  ....+.+..--|||+ +.+  ++.+.....|.+-+......++  
T Consensus       285 -------laCg~~e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~--Gs~dr~i~~wdlDgn~~~~W~gvr  353 (519)
T KOG0293|consen  285 -------LACGFDEVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVT--GSPDRTIIMWDLDGNILGNWEGVR  353 (519)
T ss_pred             -------EecCchHheeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEe--cCCCCcEEEecCCcchhhcccccc
Confidence                   77777777999999998877765443  123455677789999 664  3333344456654443222221  


Q ss_pred             --eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-E-Ee---HHHHHhhhccCCCcEEEEcc-cCc
Q psy682          154 --RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-F-SS---ISLAWKNCQRDTSDVKVHTT-FGD  225 (330)
Q Consensus       154 --~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS---t~~lW~~SgS~Dgtvkl~~~-~G~  225 (330)
                        ...++++++||+++++.+ .|+.||+ ++.++-...+.+.-|.-.. + .|   ...|   --=.|.++.+|+. +-+
T Consensus       354 ~~~v~dlait~Dgk~vl~v~-~d~~i~l-~~~e~~~dr~lise~~~its~~iS~d~k~~L---vnL~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVT-VDKKIRL-YNREARVDRGLISEEQPITSFSISKDGKLAL---VNLQDQEIHLWDLEENK  428 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEe-cccceee-echhhhhhhccccccCceeEEEEcCCCcEEE---EEcccCeeEEeecchhh
Confidence              236889999999988887 7999999 9987543333333333322 1 11   1111   1124678889976 567


Q ss_pred             eeeecCCCCCCCCCcEEEeC-CCccEEEEcc-CCeEEEE-eeCCceeeeccCcc
Q psy682          226 LLRSLDPPSGFASPESVVMS-REGVIVVNYE-RGHIAAF-TMNGNRLRHESHND  276 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS-~dG~~l~s~~-~~~~~~~-s~nG~~las~~~~~  276 (330)
                      +++...||....-+-.=+|. -+..++|||| |+.++.| ..+|++|+.++.|.
T Consensus       429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence            88888888763233333565 4568999996 7778777 78999999999875

>KOG0299|consensus

Probab=99.45  E-value=1.2e-12  Score=128.77  Aligned_cols=184  Identities=16%  Similarity=0.182  Sum_probs=119.3

Q ss_pred             cceeecCCCceeEEEeCCCCCc-----------------------------------Ccceee-eecCccEEEEEeCCCC
Q psy682           20 LYAFPSCDSSVRSLALSHDQKY-----------------------------------SPMMFS-TVLDDVCMSLKFPSNS   63 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~~-----------------------------------~~l~~~-~~~~d~~~~v~Fs~~~   63 (330)
                      ......|+-.|.+|+++||.+.                                   .++... .+|...+..++.|||+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4567889999999999998776                                   011111 1444555555555555


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceec
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH  142 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~  142 (330)
                      .                 ++|++++|.-|++|+.+..+.... .||.+    ++.++.|-....                
T Consensus       215 k-----------------ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~----------------  257 (479)
T KOG0299|consen  215 K-----------------YLATGGRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTS----------------  257 (479)
T ss_pred             c-----------------EEEecCCCceEEEecCcccchhhccccccc----ceeeeeeecCcc----------------
Confidence            5                 469999999999999987664333 56653    333333322222                


Q ss_pred             cCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----------Ee------HHHH
Q psy682          143 LGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----------SS------ISLA  206 (330)
Q Consensus       143 l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----------aS------t~~l  206 (330)
                                           .  +|+++ .|+++|+ |+++.-..+.+++||+|.|+          ++      |+++
T Consensus       258 ---------------------~--lys~s-~Drsvkv-w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rl  312 (479)
T KOG0299|consen  258 ---------------------E--LYSAS-ADRSVKV-WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRL  312 (479)
T ss_pred             ---------------------c--eeeee-cCCceEE-EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEE
Confidence                                 1  23333 4666666 66665556666666666651          11      5666


Q ss_pred             Hhh---------------------------hccCCCcEEEEcc-cCceeeecCCCCC----------CCCCcEEEeCCCc
Q psy682          207 WKN---------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSG----------FASPESVVMSREG  248 (330)
Q Consensus       207 W~~---------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~----------~~~v~~v~fS~dG  248 (330)
                      |.+                           |||.||.|-||.. +-+.|.+-+-.++          ..+|++|+..|-.
T Consensus       313 wKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s  392 (479)
T KOG0299|consen  313 WKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS  392 (479)
T ss_pred             EeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence            655                           9999999999964 5555554332111          0278999999999


Q ss_pred             cEEEEcc-CCeEEEEeeC
Q psy682          249 VIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       249 ~~l~s~~-~~~~~~~s~n  265 (330)
                      ..+|||+ +|.+++|-+.
T Consensus       393 dL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  393 DLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ceEEecCCCCceEEEEec
Confidence            9999997 9999999654

>KOG1408|consensus

Probab=99.44  E-value=8.1e-13  Score=135.43  Aligned_cols=114  Identities=12%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Ccc-ee-----------eeecCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPM-MF-----------STVLDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l-~~-----------~~~~~d~~~~v~Fs~~~~v~   66 (330)
                      -+|-|+|...-++-..+..|...+.+|||||+|++        .|. +.           +..|.=.+..++|+|.++.|
T Consensus        58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyv  137 (1080)
T KOG1408|consen   58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYV  137 (1080)
T ss_pred             cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEE
Confidence            47889999887888888999999999999999999        221 11           22455567788888888885


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP  139 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~  139 (330)
                                     ++|..-.|.-|+.|+..-+.    .+-++.+.+.+..++||-|+.+.+.+.+-..+.|
T Consensus       138 ---------------vSVGsQHDMIVnv~dWr~N~----~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~w  191 (1080)
T KOG1408|consen  138 ---------------VSVGSQHDMIVNVNDWRVNS----SGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLW  191 (1080)
T ss_pred             ---------------EeeccccceEEEhhhhhhcc----cccccccceeEEEEEEccCCceeeeeeeeeEEEE
Confidence                           77777888888888764432    2233344467778999999986653333333333

>KOG1408|consensus

Probab=99.44  E-value=9.2e-13  Score=135.01  Aligned_cols=236  Identities=12%  Similarity=0.107  Sum_probs=159.7

Q ss_pred             CcccCCCcEEEeeccccccccee-------------------------------------ecCCCceeEEEeCCCCCc--
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF-------------------------------------PSCDSSVRSLALSHDQKY--   41 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl-------------------------------------~gH~~~V~svafSpdg~~--   41 (330)
                      +|+|.|+|||||++..+..-.++                                     -+-.-.+++|+.|||||.  
T Consensus       396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA  475 (1080)
T KOG1408|consen  396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA  475 (1080)
T ss_pred             eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence            47899999999998642211111                                     233456888888888887  


Q ss_pred             ----------------CcceeeeecCccEEEEEeCC-C--CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC--CCC
Q psy682           42 ----------------SPMMFSTVLDDVCMSLKFPS-N--SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP--DYA  100 (330)
Q Consensus        42 ----------------~~l~~~~~~~d~~~~v~Fs~-~--~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~--~~~  100 (330)
                                      ..+-+...|+..|..+.||- +  -+                 .+|||++|..||+.+.  +|.
T Consensus       476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~k-----------------LLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNK-----------------LLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhH-----------------hhhhccCCceEEEEecccccc
Confidence                            12233557888888888873 2  22                 3599999999999996  466


Q ss_pred             CcccCCCCCCCCCCCCCCccccCCC---ceeccCCCCCCCcceecc-C----C-CCc---ccee-eeeeEEEEecCCCeE
Q psy682          101 ASIQSPSYAETPGSPPGNLPLTLDP---ILTHPTSNNNAPVPKRHL-G----D-NFS---QKLR-VRHNCFVTTVDSRFL  167 (330)
Q Consensus       101 ~~~~~~~h~~~~~~~~~~l~fs~D~---~l~~~s~~~~~~~~~~~l-~----~-~~~---~~~~-~~~~~~~~spDg~~i  167 (330)
                      .+.++-+|+.    .+.++-|--.|   +|.+   .++++.+..+. .    + .|.   +++. ..-..+++-|..+++
T Consensus       539 l~qtld~HSs----sITsvKFa~~gln~~Mis---cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  539 LVQTLDGHSS----SITSVKFACNGLNRKMIS---CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             hhhhhccccc----ceeEEEEeecCCceEEEe---ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            6777779985    45567777666   2553   23333321111 0    1 111   1111 111467789999995


Q ss_pred             EEeeccCCeEEEeeecccccccccccCCCC---c-E--EE--e-HHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCCC
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDHPN---R-L--FS--S-ISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGFA  237 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d---~-V--ia--S-t~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~  237 (330)
                      +. +--|+.||+ |+++.||..+.+.|-.+   . |  +.  | .-.+   +...|+|+-+.+ ..|+++.++.||+.  
T Consensus       612 ~t-~cQDrniri-f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a---tScsdktl~~~Df~sgEcvA~m~GHsE--  684 (1080)
T KOG1408|consen  612 VT-VCQDRNIRI-FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA---TSCSDKTLCFVDFVSGECVAQMTGHSE--  684 (1080)
T ss_pred             EE-EecccceEE-EeccccceeeeecccccCCCceEEEEECCCccEEE---EeecCCceEEEEeccchhhhhhcCcch--
Confidence            54 558999999 99999998877776333   2 3  11  1 1111   445689999986 58999999999999  


Q ss_pred             CCcEEEeCCCccEEEEc-cCCeEEEEeeCCc
Q psy682          238 SPESVVMSREGVIVVNY-ERGHIAAFTMNGN  267 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~  267 (330)
                      .|..+.|++|.+-|+|. +|+-|..|..--.
T Consensus       685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             heeeeeecccchhheeecCCceEEEEECchh
Confidence            99999999999999998 5888888875443

>KOG0283|consensus

Probab=99.44  E-value=6.1e-13  Score=137.92  Aligned_cols=195  Identities=13%  Similarity=0.113  Sum_probs=139.1

Q ss_pred             CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccc
Q psy682           42 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL  121 (330)
Q Consensus        42 ~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f  121 (330)
                      .|+-.+.||.+-|+.+..|-|.=+                  .|++.|+|||||.+......-.-.|.    +-|.|+.|
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~fL------------------LSSSMDKTVRLWh~~~~~CL~~F~Hn----dfVTcVaF  417 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNNFL------------------LSSSMDKTVRLWHPGRKECLKVFSHN----DFVTCVAF  417 (712)
T ss_pred             cchhhhhccchhheecccccCCee------------------EeccccccEEeecCCCcceeeEEecC----CeeEEEEe
Confidence            333445688888888888877764                  78999999999999877666666886    67889999


Q ss_pred             cCCCc-eeccCCCCCCCcceeccCCCCccceeee------eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc-
Q psy682          122 TLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF-  193 (330)
Q Consensus       122 s~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~-  193 (330)
                      .|--. +.. |++-+-+++.|.+.+.   .+-.+      ..+++++||||+.++ |..++..|+ +++..-++++... 
T Consensus       418 nPvDDryFi-SGSLD~KvRiWsI~d~---~Vv~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~f-Y~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  418 NPVDDRYFI-SGSLDGKVRLWSISDK---KVVDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRF-YDTEGLKLVSDFHI  491 (712)
T ss_pred             cccCCCcEe-ecccccceEEeecCcC---eeEeehhhhhhheeEEeccCCceEEE-EEeccEEEE-EEccCCeEEEeeeE
Confidence            88655 443 4555666777877442   22222      247779999999555 567999999 9987555432211 


Q ss_pred             -C-------CCCcE----EEe----HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-
Q psy682          194 -D-------HPNRL----FSS----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-  255 (330)
Q Consensus       194 -g-------H~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-  255 (330)
                       .       |. +|    +.+    .++    =.|.|.-|+|.+. +-+|+..|+|+.....-.+-+|+.||+.||+++ 
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vL----VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFPGDPDEVL----VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             eeccCccccCc-eeeeeEecCCCCCeEE----EecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence             1       22 44    222    233    2688999999865 678999999987755667889999999999996 


Q ss_pred             CCeEEEEeeCCcee
Q psy682          256 RGHIAAFTMNGNRL  269 (330)
Q Consensus       256 ~~~~~~~s~nG~~l  269 (330)
                      +..+++|..+...+
T Consensus       567 Ds~VYiW~~~~~~~  580 (712)
T KOG0283|consen  567 DSWVYIWKNDSFNS  580 (712)
T ss_pred             CceEEEEeCCCCcc
Confidence            66799999866553

>KOG0264|consensus

Probab=99.43  E-value=2.1e-12  Score=126.52  Aligned_cols=231  Identities=13%  Similarity=0.110  Sum_probs=155.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+++..+.|.+||...-.      +..... + .+.||      +.+.||++..+.+.++++.+-               
T Consensus       141 At~t~~~dv~Vfd~tk~~------s~~~~~-~-~~~Pd------l~L~gH~~eg~glsWn~~~~g---------------  191 (422)
T KOG0264|consen  141 ATKTSSGDVYVFDYTKHP------SKPKAS-G-ECRPD------LRLKGHEKEGYGLSWNRQQEG---------------  191 (422)
T ss_pred             EecCCCCCEEEEEeccCC------Cccccc-c-cCCCc------eEEEeecccccccccccccce---------------
Confidence            467788899999875411      111000 0 33333      234555555566666666554               


Q ss_pred             EEEEEcCCcceEEEeCCCCCCc--------ccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccC---CCC
Q psy682           81 VVTVTANHQFAINRWNPDYAAS--------IQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLG---DNF  147 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~--------~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~---~~~  147 (330)
                       -++|++.|.+|.+|+.+....        .-+.+|++.|.+    ++|.+=-.  +++  -+.+..+..+.++   ...
T Consensus       192 -~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~s--v~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  192 -TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGS--VGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             -eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhhee--ecCCCeEEEEEcCCCCCCC
Confidence             379999999999999975543        122488865554    66665444  443  3333344444433   122


Q ss_pred             ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccc-cccccccCCCCcEE----Ee---HHHHHhhhccCCCc
Q psy682          148 SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPNRLF----SS---ISLAWKNCQRDTSD  216 (330)
Q Consensus       148 ~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d~Vi----aS---t~~lW~~SgS~Dgt  216 (330)
                      ......|.   +|++|+|-+.+|||+|+.|+|++| |++..- +.+.++.+|.|-|+    ++   ||.+   |.+.||.
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L-wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA---SSg~D~r  340 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVAL-WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA---SSGTDRR  340 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEE-eechhcccCceeccCCCcceEEEEeCCCCCceeE---ecccCCc
Confidence            23344443   799999999999999999999999 999654 35789999999994    22   8877   8889999


Q ss_pred             EEEEccc--C-------------ceeeecCCCCCCCCCcEEEeCCCc-cEEEEc-cCCeEEEEeeCCceeeecc
Q psy682          217 VKVHTTF--G-------------DLLRSLDPPSGFASPESVVMSREG-VIVVNY-ERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       217 vkl~~~~--G-------------~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~-~~~~~~~~s~nG~~las~~  273 (330)
                      +.+|+..  |             +||-.=.||.+  .|..+++.|.- .+|+|. .+..+..|.+...+-....
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~--kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~~e~  412 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA--KVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYNPED  412 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCccc--ccccccCCCCCCeEEEEecCCceEEEeeccccccCccc
Confidence            9999852  2             23556668888  89999999875 466776 4778999998865544443

>KOG0772|consensus

Probab=99.42  E-value=7.6e-13  Score=131.69  Aligned_cols=195  Identities=12%  Similarity=0.127  Sum_probs=120.9

Q ss_pred             EEEcCCcceEEEeCCCCCCc-----ccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc----
Q psy682           83 TVTANHQFAINRWNPDYAAS-----IQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ----  149 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~-----~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~----  149 (330)
                      .+|++.|.+||.|+.+|...     +++   -+|      +.+++.+|+.+- +++.++....++..|. |-...+    
T Consensus       182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h------~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KG  254 (641)
T KOG0772|consen  182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH------QINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKG  254 (641)
T ss_pred             eeeccccceEEEEecccccccchhhhccCccccc------ccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeeecc
Confidence            59999999999999987541     122   144      577899998887 5544554444444443 111111    


Q ss_pred             --------ceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccc----cccCCCCcEEEeHHHHHhh-----
Q psy682          150 --------KLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE----GKFDHPNRLFSSISLAWKN-----  209 (330)
Q Consensus       150 --------~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~----~l~gH~d~ViaSt~~lW~~-----  209 (330)
                              .-.+|.   .|.++.|+.+-.+-+.+.|+|+|+ |+++.-|-+.    +...-..+|.+. .-.|+.     
T Consensus       255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi-Wdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~i  332 (641)
T KOG0772|consen  255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI-WDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKLI  332 (641)
T ss_pred             chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE-EecCCchhheeEEeeccCCCcccCce-eeecCCCcchh
Confidence                    112232   477789987764444457999999 9997544222    222222333221 112332     


Q ss_pred             -hccCCCcEEEEcccCceeee----cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeeccCccccccccc
Q psy682          210 -CQRDTSDVKVHTTFGDLLRS----LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHESHNDNLQELIP  283 (330)
Q Consensus       210 -SgS~Dgtvkl~~~~G~ll~t----L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~~~dVkELip  283 (330)
                       .|..||.|.+|...+..++.    =.+|..-..+++|+||+||++|+|-+ ++++.+|.+.           +.||-+-
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr-----------q~kkpL~  401 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR-----------QFKKPLN  401 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc-----------ccccchh
Confidence             89999999999875555443    12454434799999999999999975 8899988854           3445445


Q ss_pred             cccchhhhhcccCC
Q psy682          284 ELFFLPEMLVNSNG  297 (330)
Q Consensus       284 ef~~~p~~l~n~~~  297 (330)
                      ++..+|-.+...|+
T Consensus       402 ~~tgL~t~~~~tdc  415 (641)
T KOG0772|consen  402 VRTGLPTPFPGTDC  415 (641)
T ss_pred             hhcCCCccCCCCcc
Confidence            55555554444443

>KOG0278|consensus

Probab=99.41  E-value=4.3e-13  Score=123.96  Aligned_cols=209  Identities=15%  Similarity=0.111  Sum_probs=154.4

Q ss_pred             ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC
Q psy682           19 LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD   98 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~   98 (330)
                      .-.+|.||+..|-.++|||                                      +.+++-+++||+.|+.=-|-+-+
T Consensus         6 ~pl~c~ghtrpvvdl~~s~--------------------------------------itp~g~flisa~kd~~pmlr~g~   47 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSP--------------------------------------ITPDGYFLISASKDGKPMLRNGD   47 (334)
T ss_pred             CceEEcCCCcceeEEeccC--------------------------------------CCCCceEEEEeccCCCchhccCC
Confidence            3457999999999999999                                      34555667888888877777776


Q ss_pred             CCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee--eeEEEEecCCCeEEEeeccC
Q psy682           99 YAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR--HNCFVTTVDSRFLLACGFWD  174 (330)
Q Consensus        99 ~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~spDg~~i~asg~~D  174 (330)
                      ++. +.++.||.+    .+.+-++-.|.. -++++++-+.++|.--.++.+. +++-.  ...++|+.|.++|+++| -+
T Consensus        48 tgdwigtfeghkg----avw~~~l~~na~~aasaaadftakvw~a~tgdelh-sf~hkhivk~~af~~ds~~lltgg-~e  121 (334)
T KOG0278|consen   48 TGDWIGTFEGHKG----AVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-SFEHKHIVKAVAFSQDSNYLLTGG-QE  121 (334)
T ss_pred             CCCcEEeeeccCc----ceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-hhhhhheeeeEEecccchhhhccc-hH
Confidence            555 777889974    777888888888 4445666666676555454432 12211  25789999999966655 79


Q ss_pred             CeEEEeeeccccc-ccccccCCCCcE---E--Ee-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682          175 NSFREPFTTMYLA-LQEGKFDHPNRL---F--SS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       175 ~tirl~w~~~~g~-l~~~l~gH~d~V---i--aS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                      +-+|+ |+++.-+ ....+.||...|   +  .+ ..+|   |.++|+|||||+. +|+.+++|.-.   +.|.++-+|+
T Consensus       122 kllrv-fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL---SSadd~tVRLWD~rTgt~v~sL~~~---s~VtSlEvs~  194 (334)
T KOG0278|consen  122 KLLRV-FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL---SSADDKTVRLWDHRTGTEVQSLEFN---SPVTSLEVSQ  194 (334)
T ss_pred             HHhhh-hhccCCCCCchhhcCCCCcceeEEEeccCceEE---eeccCCceEEEEeccCcEEEEEecC---CCCcceeecc
Confidence            99999 9987543 455678888877   2  22 4444   7899999999975 89999999864   3699999999


Q ss_pred             CccEEEEccCCeEEEEeeCCc-eeeeccCcccc
Q psy682          247 EGVIVVNYERGHIAAFTMNGN-RLRHESHNDNL  278 (330)
Q Consensus       247 dG~~l~s~~~~~~~~~s~nG~-~las~~~~~dV  278 (330)
                      ||.+|..+.-+.+..|.++-- +|.+.+...+|
T Consensus       195 dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV  227 (334)
T KOG0278|consen  195 DGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNV  227 (334)
T ss_pred             CCCEEEEecCceeEEeccccccceeeccCcccc
Confidence            999999998888999987753 34555544444

>KOG0646|consensus

Probab=99.37  E-value=7.6e-12  Score=123.21  Aligned_cols=189  Identities=12%  Similarity=0.127  Sum_probs=131.7

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      |...|.|.||.+++|++|..+.+|...|+.+.||-||.+                                         
T Consensus        99 g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-----------------------------------------  137 (476)
T KOG0646|consen   99 GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-----------------------------------------  137 (476)
T ss_pred             ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-----------------------------------------
Confidence            347789999999999999999999999999999999888                                         


Q ss_pred             EEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEe-
Q psy682           83 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT-  161 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s-  161 (330)
                      ++|++.|+.|..|+...                    .+++|..-        +....+.+.+|   ++.+....+.+. 
T Consensus       138 iiTgskDg~V~vW~l~~--------------------lv~a~~~~--------~~~p~~~f~~H---tlsITDl~ig~Gg  186 (476)
T KOG0646|consen  138 IITGSKDGAVLVWLLTD--------------------LVSADNDH--------SVKPLHIFSDH---TLSITDLQIGSGG  186 (476)
T ss_pred             EEecCCCccEEEEEEEe--------------------ecccccCC--------CccceeeeccC---cceeEEEEecCCC
Confidence            58999999999999821                    11111110        12233333332   234444333344 


Q ss_pred             cCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--E-EEe--HHHHHhhhccCCCcEEEEc---------------
Q psy682          162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L-FSS--ISLAWKNCQRDTSDVKVHT---------------  221 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V-iaS--t~~lW~~SgS~Dgtvkl~~---------------  221 (330)
                      +++ ++++ +|.|+++|+ |++..|.|+-++.=....  | +..  ++.-   .|+.||.|-+-.               
T Consensus       187 ~~~-rl~T-aS~D~t~k~-wdlS~g~LLlti~fp~si~av~lDpae~~~y---iGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  187 TNA-RLYT-ASEDRTIKL-WDLSLGVLLLTITFPSSIKAVALDPAERVVY---IGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             ccc-eEEE-ecCCceEEE-EEeccceeeEEEecCCcceeEEEcccccEEE---ecCCcceEEeeehhcCCcccccccccc
Confidence            445 4354 568999999 999999886554322211  1 111  2221   567777665532               


Q ss_pred             --ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCcee
Q psy682          222 --TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRL  269 (330)
Q Consensus       222 --~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~l  269 (330)
                        ..|.-++.|.||.+...|+++++|-||.+|+||| ++.++.|.+-.|++
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence              2466678899998866899999999999999997 88999998887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.36  E-value=5.3e-11  Score=109.09  Aligned_cols=231  Identities=12%  Similarity=0.081  Sum_probs=127.0

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee---ccceecc
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA---NTYVTLH   77 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~---~~~~~~~   77 (330)
                      +++.|++|++|+..+|+.+..+..|.. +..++|+|||+.   .+.... +..+..+.......+..+..   .....+.
T Consensus        48 ~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~---l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  123 (300)
T TIGR03866        48 CASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKI---LYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVS  123 (300)
T ss_pred             EECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCE---EEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEEC
Confidence            567889999999999988888877654 568999999985   111111 11222222221111111100   1112333


Q ss_pred             CCcEEEEEcCCc-ceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Cccceee--
Q psy682           78 MPSVVTVTANHQ-FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLRV--  153 (330)
Q Consensus        78 ~~~~v~vS~~~~-~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~~--  153 (330)
                      +++...+.++.+ ..+..|+............    ...+.++.|++|++++..++..+..+..+.+... ...++..  
T Consensus       124 ~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       124 PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence            333333443333 3466778765443221111    1234578999999943222222222333333211 1011110  


Q ss_pred             --------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-HHHHHhhhccCCCcEEEE
Q psy682          154 --------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       154 --------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-t~~lW~~SgS~Dgtvkl~  220 (330)
                              ....++++|||++++++...++++.+ |+.++++++..+..+ ..+    +.+ --.++. +++.+|+|++|
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~-~~~~~~~i~v~  276 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV-VDAKTYEVLDYLLVG-QRVWQLAFTPDEKYLLT-TNGVSNDVSVI  276 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEE-EECCCCcEEEEEEeC-CCcceEEECCCCCEEEE-EcCCCCeEEEE
Confidence                    11357789999997766556788999 999888877654322 222    222 111110 34579999999


Q ss_pred             cc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682          221 TT-FGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                      +. +|+++++++.. .  .++.|+|+|
T Consensus       277 d~~~~~~~~~~~~~-~--~~~~~~~~~  300 (300)
T TIGR03866       277 DVAALKVIKSIKVG-R--LPWGVVVRP  300 (300)
T ss_pred             ECCCCcEEEEEEcc-c--ccceeEeCC
Confidence            76 68889999754 3  679999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302|consensus

Probab=99.35  E-value=6.5e-12  Score=121.28  Aligned_cols=188  Identities=15%  Similarity=0.171  Sum_probs=134.1

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCC--CCCeeEeeeccceeccCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPS--NSPICHVTANTYVTLHMP   79 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~--~~~v~~~~~~~~~~~~~~   79 (330)
                      +=++.|.|++|++  ++++..+..-...+-.      .+.+|++++.+|...=+.+.|||  .|.               
T Consensus       170 swse~G~V~Vw~l--~~~l~~l~~~~~~~~~------s~~~Pl~t~~ghk~EGy~LdWSp~~~g~---------------  226 (440)
T KOG0302|consen  170 SWSENGRVQVWDL--APHLNALSEPGLEVKD------SEFRPLFTFNGHKGEGYGLDWSPIKTGR---------------  226 (440)
T ss_pred             eecccCcEEEEEc--hhhhhhhcCccccccc------cccCceEEecccCccceeeecccccccc---------------
Confidence            4467899999988  3666666665555543      23366777778888788888888  232               


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeee---
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN---  156 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~---  156 (330)
                         ++|++-.+.|++|.+..+                                     .|...  .   +-+.+|..   
T Consensus       227 ---LlsGDc~~~I~lw~~~~g-------------------------------------~W~vd--~---~Pf~gH~~SVE  261 (440)
T KOG0302|consen  227 ---LLSGDCVKGIHLWEPSTG-------------------------------------SWKVD--Q---RPFTGHTKSVE  261 (440)
T ss_pred             ---cccCccccceEeeeeccC-------------------------------------ceeec--C---ccccccccchh
Confidence               588888899999998332                                     11111  0   01222322   


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeeccccc---ccccccCCCCcE-EEe-----HHHHHhhhccCCCcEEEEcc----c
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLA---LQEGKFDHPNRL-FSS-----ISLAWKNCQRDTSDVKVHTT----F  223 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~---l~~~l~gH~d~V-iaS-----t~~lW~~SgS~Dgtvkl~~~----~  223 (330)
                      -+.-||.-+.+++++|.|++||| |++..+.   .+-+ ..|...| +.|     +.++   ||++|||++||++    .
T Consensus       262 DLqWSptE~~vfaScS~DgsIrI-WDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLa---sG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  262 DLQWSPTEDGVFASCSCDGSIRI-WDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLA---SGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             hhccCCccCceEEeeecCceEEE-EEecCCCccceeEe-eccCCceeeEEccCCcceee---ecCCCceEEEEEhhhccC
Confidence            23357766677888899999999 9998773   2322 5676666 333     4455   9999999999986    4


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCC--ccEEEEccCCeEEEEee
Q psy682          224 GDLLRSLDPPSGFASPESVVMSRE--GVIVVNYERGHIAAFTM  264 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~d--G~~l~s~~~~~~~~~s~  264 (330)
                      |+.+.+++-|..  +|++|.++|.  +.++|+|++..+.+|.+
T Consensus       337 ~~pVA~fk~Hk~--pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  337 GQPVATFKYHKA--PITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             CCcceeEEeccC--CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            899999999999  9999999984  77888888999999984

>KOG0640|consensus

Probab=99.35  E-value=3.3e-12  Score=121.02  Aligned_cols=195  Identities=15%  Similarity=0.205  Sum_probs=137.1

Q ss_pred             cccceeecCCCceeEEEeCCCCCc-------C----------------------------cc-eeeeecCccEEEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY-------S----------------------------PM-MFSTVLDDVCMSLKFPS   61 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~-------~----------------------------~l-~~~~~~~d~~~~v~Fs~   61 (330)
                      ..-..+..|.+.+++.+|||||.+       .                            |+ .++-.|.|.|..+.|+|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            345678999999999999999998       1                            11 11226677777777888


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      ...+                 ++|+++|+|||+++.....                                     .+|
T Consensus       183 re~I-----------------LiS~srD~tvKlFDfsK~s-------------------------------------aKr  208 (430)
T KOG0640|consen  183 RETI-----------------LISGSRDNTVKLFDFSKTS-------------------------------------AKR  208 (430)
T ss_pred             hhhe-----------------EEeccCCCeEEEEecccHH-------------------------------------HHH
Confidence            7776                 4999999999999983321                                     011


Q ss_pred             ccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc---ccccCCCCcE----EEeHHHHHhhhccCC
Q psy682          142 HLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ---EGKFDHPNRL----FSSISLAWKNCQRDT  214 (330)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~---~~l~gH~d~V----iaSt~~lW~~SgS~D  214 (330)
                      -. ..+.+.-.  ..|+.|.|-|.+|++ |-.-.++|| +++++-+..   +--.+|.+.|    ..++-.++- +||+|
T Consensus       209 A~-K~~qd~~~--vrsiSfHPsGefllv-gTdHp~~rl-Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv-TaSkD  282 (430)
T KOG0640|consen  209 AF-KVFQDTEP--VRSISFHPSGEFLLV-GTDHPTLRL-YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV-TASKD  282 (430)
T ss_pred             HH-HHhhccce--eeeEeecCCCceEEE-ecCCCceeE-EeccceeEeeecCcccccccceeEEEecCCccEEE-EeccC
Confidence            11 11111122  246779999999666 546788999 999876542   2234577766    234555554 89999


Q ss_pred             CcEEEEc-ccCceeeecCC-CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682          215 SDVKVHT-TFGDLLRSLDP-PSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       215 gtvkl~~-~~G~ll~tL~~-h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~  273 (330)
                      |-||||+ ..++.++|+.. |.+ ..|-+..|+.+|+.|.|.+ |..+.+|-+ .||.|..-.
T Consensus       283 G~IklwDGVS~rCv~t~~~AH~g-sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  283 GAIKLWDGVSNRCVRTIGNAHGG-SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             CcEEeeccccHHHHHHHHhhcCC-ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            9999996 58999999875 555 5899999999999999987 445778854 466665444

>KOG2096|consensus

Probab=99.34  E-value=3.3e-12  Score=121.35  Aligned_cols=159  Identities=20%  Similarity=0.276  Sum_probs=115.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------------------------CcceeeeecCccE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------------------------SPMMFSTVLDDVC   54 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------------------------~~l~~~~~~~d~~   54 (330)
                      +|++.|.+|-||++. |++|.+....+..-...|.||||+.                          .-.|.+.||+..|
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV  281 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV  281 (420)
T ss_pred             EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence            578999999999996 9999999999988889999999998                          1123356888888


Q ss_pred             EEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC--CCC------cccC--CCCCCCCCCCCCCccccCC
Q psy682           55 MSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD--YAA------SIQS--PSYAETPGSPPGNLPLTLD  124 (330)
Q Consensus        55 ~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~--~~~------~~~~--~~h~~~~~~~~~~l~fs~D  124 (330)
                      ...+||+++.-                 .+|.++|+++++|+.|  |..      ++..  +-|..  ...+-.|.++|.
T Consensus       282 ~~~aFsn~S~r-----------------~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa--g~~p~RL~lsP~  342 (420)
T KOG2096|consen  282 LAAAFSNSSTR-----------------AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA--GSEPVRLELSPS  342 (420)
T ss_pred             eeeeeCCCcce-----------------eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc--CCCceEEEeCCC
Confidence            88888888875                 4888999999999986  211      2222  22221  123447999999


Q ss_pred             CceeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeee
Q psy682          125 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFT  182 (330)
Q Consensus       125 ~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~  182 (330)
                      |+.++.+.+++-.+..-+-+..++.--.+|+   .|+++++||+++++||  |+-+|+ +.
T Consensus       343 g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv-~~  400 (420)
T KOG2096|consen  343 GDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRV-IR  400 (420)
T ss_pred             CcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeee-ec
Confidence            9965556666655543333444433233444   5888999999999998  898988 54

>KOG0300|consensus

Probab=99.34  E-value=6e-12  Score=119.62  Aligned_cols=230  Identities=10%  Similarity=0.080  Sum_probs=142.4

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++.+.|.||.+.||.||--....+                  +.|..-+||...|.++||++.+.++             
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~-------------  205 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLL-------------  205 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceE-------------
Confidence            455668999999999987654333                  3344567999999999999999975             


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC--cc--cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee
Q psy682           80 SVVTVTANHQFAINRWNPDYAA--SI--QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~--~~--~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~  155 (330)
                          .++++|.+.++|..--+-  ..  -..+|++.   ....-+-+.++..-     ++.+.-.-.+..|+ -.+.+|.
T Consensus       206 ----lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE---eE~e~sDe~~~d~d-----~~~~sD~~tiRvPl-~~ltgH~  272 (481)
T KOG0300|consen  206 ----LTASGDETAHIWKAAVNWEVPSNNAPSDHSSE---EEEEHSDEHNRDTD-----SSEKSDGHTIRVPL-MRLTGHR  272 (481)
T ss_pred             ----EEccCCcchHHHHHhhcCcCCCCCCCCCCCch---hhhhcccccccccc-----cccccCCceeeeee-eeeeccc
Confidence                888999999999831110  00  00123210   00000001111111     00000000111111 2244443


Q ss_pred             eEEEEe----cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE--eHHHHHhhhccCCCcEEEEccc--Cc
Q psy682          156 NCFVTT----VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS--SISLAWKNCQRDTSDVKVHTTF--GD  225 (330)
Q Consensus       156 ~~~~~s----pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia--St~~lW~~SgS~Dgtvkl~~~~--G~  225 (330)
                      . ++..    .-|+. +.+++||+|-.+ |++++|++++.|.||..-+  +.  +|-+| .++.|+|-|.+||+-.  =+
T Consensus       273 ~-vV~a~dWL~gg~Q-~vTaSWDRTAnl-wDVEtge~v~~LtGHd~ELtHcstHptQrL-VvTsSrDtTFRLWDFReaI~  348 (481)
T KOG0300|consen  273 A-VVSACDWLAGGQQ-MVTASWDRTANL-WDVETGEVVNILTGHDSELTHCSTHPTQRL-VVTSSRDTTFRLWDFREAIQ  348 (481)
T ss_pred             c-ceEehhhhcCcce-eeeeecccccee-eeeccCceeccccCcchhccccccCCcceE-EEEeccCceeEeccchhhcc
Confidence            2 2222    34677 667889999999 9999999999999998876  22  13222 1178999999999854  34


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC--ceeeeccCccccc
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG--NRLRHESHNDNLQ  279 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG--~~las~~~~~dVk  279 (330)
                      -+..|.||.+  .|.++.|..|.+++-..++.+++.|....  ..||+...+..+.
T Consensus       349 sV~VFQGHtd--tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N  402 (481)
T KOG0300|consen  349 SVAVFQGHTD--TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN  402 (481)
T ss_pred             eeeeeccccc--ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence            5678999999  99999999988765444677888886543  2345544444433

>KOG0299|consensus

Probab=99.33  E-value=8.4e-12  Score=122.77  Aligned_cols=201  Identities=16%  Similarity=0.160  Sum_probs=134.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+|+.|..|.+|+..+++.+++|+||.+.|-+++|--.-.-                                       
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~---------------------------------------  258 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE---------------------------------------  258 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecCccc---------------------------------------
Confidence            68999999999999999999999999999999999653222                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeee---ee
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR---HN  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~---~~  156 (330)
                        .-|++.|++|++|+.+... +.++-||++    .+..+....=.+.++ -++-+...+.|.+.+.-.-.+.++   -.
T Consensus       259 --lys~s~Drsvkvw~~~~~s~vetlyGHqd----~v~~IdaL~reR~vt-VGgrDrT~rlwKi~eesqlifrg~~~sid  331 (479)
T KOG0299|consen  259 --LYSASADRSVKVWSIDQLSYVETLYGHQD----GVLGIDALSRERCVT-VGGRDRTVRLWKIPEESQLIFRGGEGSID  331 (479)
T ss_pred             --eeeeecCCceEEEehhHhHHHHHHhCCcc----ceeeechhcccceEE-eccccceeEEEeccccceeeeeCCCCCee
Confidence              3566777889999998655 555569984    444555554455443 133445556676644322222222   25


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccc-cCCC-----C------cE--EE----eHHHHHhhhccCCCcEE
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-FDHP-----N------RL--FS----SISLAWKNCQRDTSDVK  218 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-~gH~-----d------~V--ia----St~~lW~~SgS~Dgtvk  218 (330)
                      |++|=.|--  +++|+.|++|-| |++.+-+++-+. ..|.     +      +|  ++    |-+.+   |||-||-||
T Consensus       332 cv~~In~~H--fvsGSdnG~IaL-Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~a---sGS~~G~vr  405 (479)
T KOG0299|consen  332 CVAFINDEH--FVSGSDNGSIAL-WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLA---SGSWSGCVR  405 (479)
T ss_pred             eEEEecccc--eeeccCCceEEE-eeecccCceeEeeccccccCCccccccccceeeeEecccCceEE---ecCCCCceE
Confidence            888766554  567889999999 999765542211 1121     1      22  11    12222   999999999


Q ss_pred             EEcc-cC----ceeeecCCCCCCCCCcEEEeCCCccEEEEc-cC
Q psy682          219 VHTT-FG----DLLRSLDPPSGFASPESVVMSREGVIVVNY-ER  256 (330)
Q Consensus       219 l~~~-~G----~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~  256 (330)
                      ||-. +|    +++..|.- .  +.|++|+|+++|+.|+.| ++
T Consensus       406 LW~i~~g~r~i~~l~~ls~-~--GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  406 LWKIEDGLRAINLLYSLSL-V--GFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             EEEecCCccccceeeeccc-c--cEEEEEEEccCCCEEEEeccc
Confidence            9954 56    45555542 2  389999999999955555 53

>KOG0305|consensus

Probab=99.32  E-value=2.4e-11  Score=122.61  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=147.2

Q ss_pred             CCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEE
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVT   85 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS   85 (330)
                      ...|.||+..+|+-..-+..+...|.+|+++++|+.                                         +|.
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-----------------------------------------Lav  234 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-----------------------------------------LAV  234 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECCCCCE-----------------------------------------EEE
Confidence            347899998888866666666888888888887777                                         466


Q ss_pred             cCCcceEEEeCCCCCC-cccCCC-CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeeee---EEE
Q psy682           86 ANHQFAINRWNPDYAA-SIQSPS-YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRHN---CFV  159 (330)
Q Consensus        86 ~~~~~tv~lW~~~~~~-~~~~~~-h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~---~~~  159 (330)
                      +-.+++|.+|+..... +++..+ |...+..    ++-.  +. +.+.+.++.......+...+..+++.+|..   -..
T Consensus       235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             eecCCeEEEEehhhccccccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence            6778889999985443 444445 7655443    3332  22 222112111111222223333334555653   356


Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhh---------hccCCCcEEEEcc-cCceeee
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKN---------CQRDTSDVKVHTT-FGDLLRS  229 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~---------SgS~Dgtvkl~~~-~G~ll~t  229 (330)
                      .++|+++ +|+|.-|+.+.| |+...-+....+..|...|-|   +.|..         -|+.|++||+|+. +|+.+++
T Consensus       309 ws~d~~~-lASGgnDN~~~I-wd~~~~~p~~~~~~H~aAVKA---~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  309 WSPDGNQ-LASGGNDNVVFI-WDGLSPEPKFTFTEHTAAVKA---LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             ECCCCCe-eccCCCccceEe-ccCCCccccEEEeccceeeeE---eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            8999999 777779999999 999767788899999998832   11211         6899999999965 8999998


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEc---cCCeEE-----------------------EEeeCCceeeeccCccccc
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNY---ERGHIA-----------------------AFTMNGNRLRHESHNDNLQ  279 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~---~~~~~~-----------------------~~s~nG~~las~~~~~dVk  279 (330)
                      +.-.   ..|.+|.+|+..+-|+++   ++..+.                       .+++||..+++...|++++
T Consensus       384 vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  384 VDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             cccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence            8753   379999999999877776   455433                       3456666666666665544

>KOG1787|consensus

Probab=99.31  E-value=5.9e-13  Score=144.32  Aligned_cols=93  Identities=51%  Similarity=0.938  Sum_probs=82.1

Q ss_pred             EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          177 FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       177 irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      +|+ |+....+.++.+.|+|.|+.+.+...-|+.+                                             
T Consensus       576 ~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~---------------------------------------------  610 (1126)
T KOG1787|consen  576 LRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRC---------------------------------------------  610 (1126)
T ss_pred             eecCccccccccccccccccchhhHHHHHHHHhhh---------------------------------------------
Confidence            577 8888788999999999998888877777631                                             


Q ss_pred             CCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCCCCCHHHHHHHhcC
Q psy682          256 RGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM  330 (330)
Q Consensus       256 ~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~wa~s~~~fi~~~r~  330 (330)
                                      +....+||||||||||+||+|.|.+...+|.+.+|++|.||+|||||++|++|+.+||+
T Consensus       611 ----------------l~d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~  669 (1126)
T KOG1787|consen  611 ----------------LRDTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNRE  669 (1126)
T ss_pred             ----------------ccchhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHHHHHHHH
Confidence                            12346799999999999999999999999999999999999999999999999999994

>KOG0282|consensus

Probab=99.30  E-value=1.2e-11  Score=122.17  Aligned_cols=192  Identities=12%  Similarity=0.087  Sum_probs=129.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee----------------------ecCccEEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST----------------------VLDDVCMSLK   58 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~----------------------~~~d~~~~v~   58 (330)
                      .|+|.|++|||||..+|+.+..|.. ...+.+|.|.||++-   .|+.                      .|-..+..+.
T Consensus       274 LS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n---~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~  349 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQN---IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT  349 (503)
T ss_pred             eeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCc---EEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence            3789999999999999999888753 345679999999843   1222                      3334456667


Q ss_pred             eCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc
Q psy682           59 FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV  138 (330)
Q Consensus        59 Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~  138 (330)
                      |-++|.-                 -+|++.+.++++|...-+-........  .+-.-.+++..|++....+ .+.++.+
T Consensus       350 F~~~g~r-----------------FissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~a-Qs~dN~i  409 (503)
T KOG0282|consen  350 FVDEGRR-----------------FISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAA-QSMDNYI  409 (503)
T ss_pred             EccCCce-----------------EeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehh-hccCceE
Confidence            7777664                 589999999999998655433332110  0112347888888883321 2222222


Q ss_pred             ceeccCCCC----ccceeeee-----eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe-------
Q psy682          139 PKRHLGDNF----SQKLRVRH-----NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS-------  202 (330)
Q Consensus       139 ~~~~l~~~~----~~~~~~~~-----~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS-------  202 (330)
                      ..-.+..++    ...+++|.     -.+.|||||++ +.+|..|+.+-+ |+..+-+++..+..|...++.-       
T Consensus       410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~-wdwkt~kl~~~lkah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNF-WDWKTTKLVSKLKAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             EEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEE-eechhhhhhhccccCCcceEEEEecCCCc
Confidence            222222221    12344453     46889999999 777889999999 9999999999999997776431       


Q ss_pred             HHHHHhhhccCCCcEEEEc
Q psy682          203 ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~  221 (330)
                      ...+   +++.||-||+|.
T Consensus       488 Skva---t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVA---TCGWDGLIKIWD  503 (503)
T ss_pred             ceeE---ecccCceeEecC
Confidence            2222   788999999994

>KOG0277|consensus

Probab=99.30  E-value=4.9e-12  Score=117.08  Aligned_cols=173  Identities=13%  Similarity=0.059  Sum_probs=119.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +++|.|+|||||+.+-++.++||.||...|...+|||--.-                                       
T Consensus       121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n---------------------------------------  161 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN---------------------------------------  161 (311)
T ss_pred             EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC---------------------------------------
Confidence            36799999999999988999999999999999988883111                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc---eeccCCCCccceeeee-
Q psy682           81 VVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP---KRHLGDNFSQKLRVRH-  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~---~~~l~~~~~~~~~~~~-  155 (330)
                       ..+|++.|++.++|+..-.... ..+-|+.    ...+-.++.=-....++++.+..++   .|.+..|+. .+.+|. 
T Consensus       162 -lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~----Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~-eL~gh~~  235 (311)
T KOG0277|consen  162 -LFASASGDGTLRLWDVRSPGKFMSIEAHNS----EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF-ELNGHGL  235 (311)
T ss_pred             -eEEEccCCceEEEEEecCCCceeEEEeccc----eeEeecccccCCcEEEecCCCceEEEEehhhccccce-eecCCce
Confidence             2489999999999998644322 2345642    3334444443331122455555555   444444432 234443 


Q ss_pred             --eEEEEecCCCeEEEeeccCCeEEEeeecccc-cccccccCCCCcEEE-------eHHHHHhhhccCCCcEEEEcc
Q psy682          156 --NCFVTTVDSRFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPNRLFS-------SISLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d~Via-------St~~lW~~SgS~Dgtvkl~~~  222 (330)
                        ..+.|||-..-|+++++.|.|.|+ |+.+.+ .++.+..-|+..|+-       ..-.+   |.+-|+++.||+.
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~ri-w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA---s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRI-WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA---STGWDELLYVWNP  308 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEe-cccccchhhhhhhhccceEEeccccccccCceee---ecccccceeeecc
Confidence              467789988888999999999999 999844 467777788887731       12222   7888999999974

>KOG0772|consensus

Probab=99.30  E-value=2.3e-11  Score=121.26  Aligned_cols=194  Identities=16%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             CcccCCCcEEEeecccc-------cccceeecCCCceeEEEeCCCCCcCc------------------------------
Q psy682            1 MSGGDKGIVEVWRTFNL-------ALLYAFPSCDSSVRSLALSHDQKYSP------------------------------   43 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g-------~~l~tl~gH~~~V~svafSpdg~~~~------------------------------   43 (330)
                      +|||.|.+|++||++..       +.|.  +.-...|++++|||.|.+=+                              
T Consensus       183 ~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D  260 (641)
T KOG0772|consen  183 VSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD  260 (641)
T ss_pred             eeccccceEEEEecccccccchhhhccC--cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhh
Confidence            58999999999998642       2233  44555789999999888700                              


Q ss_pred             ceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC
Q psy682           44 MMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL  123 (330)
Q Consensus        44 l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~  123 (330)
                      |.-..||...+....|.|+..-                ...|++.|+|+++|+.+... .+                   
T Consensus       261 m~nTKGHia~lt~g~whP~~k~----------------~FlT~s~DgtlRiWdv~~~k-~q-------------------  304 (641)
T KOG0772|consen  261 MYNTKGHIAELTCGCWHPDNKE----------------EFLTCSYDGTLRIWDVNNTK-SQ-------------------  304 (641)
T ss_pred             hhccCCceeeeeccccccCccc----------------ceEEecCCCcEEEEecCCch-hh-------------------
Confidence            0001244444444555554332                35788999999999996541 11                   


Q ss_pred             CCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc----ccccccCCCC--
Q psy682          124 DPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPN--  197 (330)
Q Consensus       124 D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d--  197 (330)
                         +.         ++.-...+    -.++....-++++||+. ||+|--|++|++ |+.- +.    ....-..|.+  
T Consensus       305 ---~q---------Vik~k~~~----g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~-W~~~-~~~v~p~~~vk~AH~~g~  365 (641)
T KOG0772|consen  305 ---LQ---------VIKTKPAG----GKRVPVTSCAWNRDGKL-IAAGCLDGSIQI-WDKG-SRTVRPVMKVKDAHLPGQ  365 (641)
T ss_pred             ---ee---------EEeeccCC----CcccCceeeecCCCcch-hhhcccCCceee-eecC-CcccccceEeeeccCCCC
Confidence               11         11111111    12223344469999998 777779999999 9973 22    1333445665  


Q ss_pred             cE----EEe--HHHHHhhhccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          198 RL----FSS--ISLAWKNCQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       198 ~V----iaS--t~~lW~~SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      -|    |+.  ...|   |-+.|+|.|+|++.  -+.|.+..|-.....-..++||||.++|++|
T Consensus       366 ~Itsi~FS~dg~~Ll---SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  366 DITSISFSYDGNYLL---SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             ceeEEEeccccchhh---hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEec
Confidence            22    332  6667   99999999999863  5666665553332345688999999999998

>KOG1446|consensus

Probab=99.28  E-value=8.5e-11  Score=111.25  Aligned_cols=187  Identities=13%  Similarity=0.095  Sum_probs=130.0

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCcc---EEEEEeCCCCC-eeEeeeccceeccCCc
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDV---CMSLKFPSNSP-ICHVTANTYVTLHMPS   80 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~---~~~v~Fs~~~~-v~~~~~~~~~~~~~~~   80 (330)
                      .|.+||+-++.+-+-++.|+||...|.+++.||-+..    |.++..|.   .|.++ +++-| ++.+..+-...+.|.+
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~----FlS~S~D~tvrLWDlR-~~~cqg~l~~~~~pi~AfDp~G  152 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT----FLSSSLDKTVRLWDLR-VKKCQGLLNLSGRPIAAFDPEG  152 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe----EEecccCCeEEeeEec-CCCCceEEecCCCcceeECCCC
Confidence            4889999999999999999999999999999998877    88877663   46777 34433 3445556667899999


Q ss_pred             EEEEEcCCcceEEEeCCCC--CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           81 VVTVTANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~--~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                      ++.|.++....|||.+..-  ....++-..+......-..+.|||||+ |+. +.+...-.+.--..+...+++..+.  
T Consensus       153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSGYPNA  231 (311)
T ss_pred             cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEeeccCC
Confidence            9999999998999999741  112222222222234566899999999 444 2222211112222222334444443  


Q ss_pred             ----eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC-CCCcE
Q psy682          156 ----NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRL  199 (330)
Q Consensus       156 ----~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~V  199 (330)
                          ....|+||||+|++ |+.|++|-+ |++++|+....+.| |...+
T Consensus       232 ~~~~~~a~ftPds~Fvl~-gs~dg~i~v-w~~~tg~~v~~~~~~~~~~~  278 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLS-GSDDGTIHV-WNLETGKKVAVLRGPNGGPV  278 (311)
T ss_pred             CCcceeEEECCCCcEEEE-ecCCCcEEE-EEcCCCcEeeEecCCCCCCc
Confidence                24569999999665 567999999 99999998888887 44433

>KOG0644|consensus

Probab=99.28  E-value=1.6e-11  Score=127.71  Aligned_cols=220  Identities=12%  Similarity=0.156  Sum_probs=137.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      ++|++|..||+|...++..+.+|+||.+.|+.+|.|....+                  .|+..+.+|+..|..+.|+|-
T Consensus       206 itgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~  285 (1113)
T KOG0644|consen  206 ITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR  285 (1113)
T ss_pred             eecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc
Confidence            47899999999999999999999999999999999985444                  222223344444444444442


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCC-CCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYA-ETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~-~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                                           ++.+.|+|+++|+..-..+...+.-. -.-.+.+-++-|..++. .++.+-++..+.  
T Consensus       286 ---------------------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n--  342 (1113)
T KOG0644|consen  286 ---------------------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN--  342 (1113)
T ss_pred             ---------------------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc--
Confidence                                 26688999999999733333321100 00012334555555555 333222221111  


Q ss_pred             eccCCCCccceeeeeeE---EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-------eHHHHHhhh
Q psy682          141 RHLGDNFSQKLRVRHNC---FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-------SISLAWKNC  210 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~~---~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-------St~~lW~~S  210 (330)
                      ++.     ..+..+++-   +.++.|...+..++=.|..+.+ |++.+|.+.+.+.||.|.+.+       +.++.   |
T Consensus       343 ~e~-----~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v-wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m---s  413 (1113)
T KOG0644|consen  343 HEF-----EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV-WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM---S  413 (1113)
T ss_pred             chh-----hHhhhhccceEEEeccccccccceeeeeeeEeee-eecccchhhhhhcccccceeeeeecCCCcHhhh---h
Confidence            111     112223322   1123333333333434555566 999999999999999999843       35555   9


Q ss_pred             ccCCCcEEEEcc-cCceeeec-CCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          211 QRDTSDVKVHTT-FGDLLRSL-DPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       211 gS~Dgtvkl~~~-~G~ll~tL-~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      +..||...||+. .|-.++.. .|| +  .+..-+||+||+.++..+
T Consensus       414 ag~dgst~iwdi~eg~pik~y~~gh-~--kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEGIPIKHYFIGH-G--KLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             ccCCCceEeeecccCCcceeeeccc-c--eeeccccCCCCceEecCC
Confidence            999999999976 67666553 454 3  577889999999888764

>KOG1407|consensus

Probab=99.27  E-value=4.8e-11  Score=110.90  Aligned_cols=220  Identities=14%  Similarity=0.106  Sum_probs=144.3

Q ss_pred             CcccCCCcEEEeecccccccce--eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA--FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t--l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.|+++++|++..+++++.  ..||.+.|-.++.+|.                       +.+              
T Consensus        36 asgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-----------------------~~d--------------   78 (313)
T KOG1407|consen   36 ASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-----------------------HPD--------------   78 (313)
T ss_pred             eecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-----------------------CCc--------------
Confidence            6899999999999987766554  5899999999999883                       111              


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc-----eeccCCCCccceee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-----KRHLGDNFSQKLRV  153 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~-----~~~l~~~~~~~~~~  153 (330)
                       -  .++++.+++|++|+...+....    .-...-...+.+-+||+.+... .+.++.+.     ..+......+..+.
T Consensus        79 -~--~atas~dk~ir~wd~r~~k~~~----~i~~~~eni~i~wsp~g~~~~~-~~kdD~it~id~r~~~~~~~~~~~~e~  150 (313)
T KOG1407|consen   79 -L--FATASGDKTIRIWDIRSGKCTA----RIETKGENINITWSPDGEYIAV-GNKDDRITFIDARTYKIVNEEQFKFEV  150 (313)
T ss_pred             -c--eEEecCCceEEEEEeccCcEEE----EeeccCcceEEEEcCCCCEEEE-ecCcccEEEEEecccceeehhccccee
Confidence             1  2667777789999985443221    1112235678899999994431 33333221     22222222333444


Q ss_pred             eeeEEEEecCCCe-EEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcccC-c
Q psy682          154 RHNCFVTTVDSRF-LLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTTFG-D  225 (330)
Q Consensus       154 ~~~~~~~spDg~~-i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~G-~  225 (330)
                      +.-+  ++-++.+ ++..|  -++|.| -+.-..|.++++..|+.--|    ..  .-.+   .||.|--|-||+.+- -
T Consensus       151 ne~~--w~~~nd~Fflt~G--lG~v~I-LsypsLkpv~si~AH~snCicI~f~p~GryfA---~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  151 NEIS--WNNSNDLFFLTNG--LGCVEI-LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA---TGSADALVSLWDVDELI  222 (313)
T ss_pred             eeee--ecCCCCEEEEecC--CceEEE-EeccccccccccccCCcceEEEEECCCCceEe---eccccceeeccChhHhh
Confidence            4444  3344444 34444  688887 55556889999999986542    12  1112   699999999998753 4


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEccCCe--EEEEeeCCceeeeccCc
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNYERGH--IAAFTMNGNRLRHESHN  275 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~--~~~~s~nG~~las~~~~  275 (330)
                      .+|++.-+.-  +|+.|+||-||+.|||||.+.  -+.+...|..+-....+
T Consensus       223 C~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  223 CERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             hheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence            5788888877  999999999999999998554  35667777666555433

>KOG0973|consensus

Probab=99.27  E-value=4.3e-11  Score=127.14  Aligned_cols=205  Identities=10%  Similarity=0.025  Sum_probs=136.9

Q ss_pred             eeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC----C---------------CcccCCC
Q psy682           47 STVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY----A---------------ASIQSPS  107 (330)
Q Consensus        47 ~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~----~---------------~~~~~~~  107 (330)
                      ...|...|..|.|||||+.+                 |+++.|+-|-+|....    .               ....+.+
T Consensus        65 m~~h~~sv~CVR~S~dG~~l-----------------AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~  127 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYL-----------------ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG  127 (942)
T ss_pred             eccccCceeEEEECCCCCeE-----------------eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec
Confidence            44778889999999999985                 8889999899999872    1               1233457


Q ss_pred             CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeee
Q psy682          108 YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFT  182 (330)
Q Consensus       108 h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~  182 (330)
                      |...|.+    +.-+||+. +++.+.++  .+..|.... .....+++|.   .-+.|-|-||| +|+=+.|++||+ |.
T Consensus       128 H~~DV~D----v~Wsp~~~~lvS~s~Dn--sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikv-wr  199 (942)
T KOG0973|consen  128 HDSDVLD----VNWSPDDSLLVSVSLDN--SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKV-WR  199 (942)
T ss_pred             CCCccce----eccCCCccEEEEecccc--eEEEEccccceeeeeeecccccccceEECCccCe-eeeecCCceEEE-EE
Confidence            8765554    88999999 55434444  344443211 2334566665   35779999999 666668999999 99


Q ss_pred             cccccccccccCCCCcEEEeH--HHHHhhhccCCC--------------cEEEEcccC-ceeeecCCCCCCCCCcEEEeC
Q psy682          183 TMYLALQEGKFDHPNRLFSSI--SLAWKNCQRDTS--------------DVKVHTTFG-DLLRSLDPPSGFASPESVVMS  245 (330)
Q Consensus       183 ~~~g~l~~~l~gH~d~ViaSt--~~lW~~SgS~Dg--------------tvkl~~~~G-~ll~tL~~h~~~~~v~~v~fS  245 (330)
                      +.+-.+.+++.++.+-+.-+|  .++   |=|-||              ++.|-.+.+ +.=.+|-||++  +++.|+|+
T Consensus       200 t~dw~i~k~It~pf~~~~~~T~f~Rl---SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFn  274 (942)
T KOG0973|consen  200 TSDWGIEKSITKPFEESPLTTFFLRL---SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFN  274 (942)
T ss_pred             cccceeeEeeccchhhCCCcceeeec---ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeC
Confidence            877667777777766442211  111   223333              333333322 22457889999  99999999


Q ss_pred             CC------c-----------cEEEEccCCe-------------------------EEEEeeCCceeeeccCccccccc
Q psy682          246 RE------G-----------VIVVNYERGH-------------------------IAAFTMNGNRLRHESHNDNLQEL  281 (330)
Q Consensus       246 ~d------G-----------~~l~s~~~~~-------------------------~~~~s~nG~~las~~~~~dVkEL  281 (330)
                      |-      +           -++|+|+++.                         -..|++||..|--.+.++.|.-+
T Consensus       275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             hHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            62      2           1788887543                         36889999998777778777644

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.27  E-value=7.5e-10  Score=105.94  Aligned_cols=251  Identities=10%  Similarity=0.129  Sum_probs=144.6

Q ss_pred             cccCCCcEEEeeccc-cc--ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee------cc
Q psy682            2 SGGDKGIVEVWRTFN-LA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA------NT   72 (330)
Q Consensus         2 sgs~d~~V~lW~~~~-g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~------~~   72 (330)
                      +...|+.|++|++.+ |+  ++.+++ +.+....++|||||+.  ++........+....+..++.+..+..      ..
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~--lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRH--LYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCE--EEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            446789999999963 54  556665 3466778999999987  222223345666666665555433321      12


Q ss_pred             ceeccCCcEEEE-EcCCcceEEEeCCCCCC-cc----cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-
Q psy682           73 YVTLHMPSVVTV-TANHQFAINRWNPDYAA-SI----QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-  145 (330)
Q Consensus        73 ~~~~~~~~~v~v-S~~~~~tv~lW~~~~~~-~~----~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-  145 (330)
                      ++.+.+++..+. +...++.|..|+.+... +.    ..++.     ..+..+.|+||++++..+..++..+..+.+.. 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-----EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-----CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            345565554333 33347788999886321 11    11121     23566889999984422233334444444321 


Q ss_pred             -CCcc----ceee----eeeEEEEecCCCeEEEeeccCCeEEEeeeccc--cc--ccccccCCCC---------cE-EEe
Q psy682          146 -NFSQ----KLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY--LA--LQEGKFDHPN---------RL-FSS  202 (330)
Q Consensus       146 -~~~~----~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~--g~--l~~~l~gH~d---------~V-iaS  202 (330)
                       .+.+    ..+.    ....++|+|||++++++...+++|.+ |+++.  |+  +++.+..+..         .+ +..
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDV-WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEE-EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence             1110    0111    12468899999998888767999999 99862  33  3444432211         12 222


Q ss_pred             -HHHHHhhhccCCCcEEEEcc--cCc---eeeecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeC
Q psy682          203 -ISLAWKNCQRDTSDVKVHTT--FGD---LLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMN  265 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~--~G~---ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~n  265 (330)
                       --.++- +...+++|.+|..  +|.   ++.....  + ..++.++|+|||+.|+.++  ++++..|.+|
T Consensus       238 dg~~lyv-~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        238 DGRHLYA-CDRTASLISVFSVSEDGSVLSFEGHQPT--E-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCEEEE-ecCCCCeEEEEEEeCCCCeEEEeEEEec--c-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence             001111 3445788999865  343   2333221  1 1578899999999998763  7789999876

>KOG0641|consensus

Probab=99.26  E-value=1.9e-10  Score=105.40  Aligned_cols=223  Identities=15%  Similarity=0.144  Sum_probs=144.3

Q ss_pred             CcccCCCcEEEeeccccc-----ccceeecCCCceeEEEeCCCCCcCcceeee-ecCc-cEEEEEeCCCCCeeEeeeccc
Q psy682            1 MSGGDKGIVEVWRTFNLA-----LLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDD-VCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~-----~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d-~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      |+||.|++||+-..+...     .-..|.-|.+.|+++||=-|-+.......+ |..| .++..----.-+.-+++.+|.
T Consensus       105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence            689999999998766422     123478899999999997766552222222 1111 222111111111222222222


Q ss_pred             e---eccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccc
Q psy682           74 V---TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  150 (330)
Q Consensus        74 ~---~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~  150 (330)
                      .   ..+=.+...||+++|.||+.|+..-+.                ++..     +          -..++-++     
T Consensus       185 hilalyswn~~m~~sgsqdktirfwdlrv~~----------------~v~~-----l----------~~~~~~~g-----  228 (350)
T KOG0641|consen  185 HILALYSWNGAMFASGSQDKTIRFWDLRVNS----------------CVNT-----L----------DNDFHDGG-----  228 (350)
T ss_pred             cEEEEEEecCcEEEccCCCceEEEEeeeccc----------------eeee-----c----------cCcccCCC-----
Confidence            1   122244567999999999999983321                0000     0          00111111     


Q ss_pred             eeee-eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEccc
Q psy682          151 LRVR-HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       151 ~~~~-~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      ++.. ..++++-|-|+. +++|..|.+-.+ +++..|+++|.+..|+..|    |+.  --+|   ++|.|..|||=+++
T Consensus       229 lessavaav~vdpsgrl-l~sg~~dssc~l-ydirg~r~iq~f~phsadir~vrfsp~a~yll---t~syd~~ikltdlq  303 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGRL-LASGHADSSCML-YDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL---TCSYDMKIKLTDLQ  303 (350)
T ss_pred             cccceeEEEEECCCcce-eeeccCCCceEE-EEeeCCceeeeeCCCccceeEEEeCCCceEEE---EecccceEEEeecc
Confidence            1111 246778999987 888999999999 9999999999999999987    333  2233   89999999999999


Q ss_pred             CceeeecC-----CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          224 GDLLRSLD-----PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       224 G~ll~tL~-----~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      |+|-+.|.     .|.+  .+-.+.+.|...-.+|.+ +.+.-+|..||
T Consensus       304 gdla~el~~~vv~ehkd--k~i~~rwh~~d~sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKD--KAIQCRWHPQDFSFISSSADKTATLWALNG  350 (350)
T ss_pred             cchhhcCceEEEEeccC--ceEEEEecCccceeeeccCcceEEEeccCC
Confidence            99987765     4777  677788888877777765 77888888776

>KOG0289|consensus

Probab=99.26  E-value=2.4e-10  Score=112.11  Aligned_cols=212  Identities=15%  Similarity=0.247  Sum_probs=150.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEE-eCCCCCeeEeee------ccc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLK-FPSNSPICHVTA------NTY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~-Fs~~~~v~~~~~------~~~   73 (330)
                      ++|+.|..||+|.+.+.........|...|+.+...|.|.+    +....+|.+|... ++.+.+++.+++      .+.
T Consensus       277 ~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeY----llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts  352 (506)
T KOG0289|consen  277 ITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEY----LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS  352 (506)
T ss_pred             eecCCcceEEeeccccccCccccccccccceeeeeccCCcE----EEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence            47899999999998877777778999999999999999988    8899999988766 455667777776      344


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcc-eeccCCCCccc
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVP-KRHLGDNFSQK  150 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~-~~~l~~~~~~~  150 (330)
                      .++++|+.+.+++..|+-||+|+.. +.....++||++    ++..+.|+-||- |++++.++...+| .|++ ..+ ++
T Consensus       353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~----~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~-kt  426 (506)
T KOG0289|consen  353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG----PVKAISFSENGYWLATAADDGSVKLWDLRKL-KNF-KT  426 (506)
T ss_pred             eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC----ceeEEEeccCceEEEEEecCCeEEEEEehhh-ccc-ce
Confidence            7899999999999999999999985 445788899985    778899999999 6654444444444 2222 222 23


Q ss_pred             eeee----eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCce
Q psy682          151 LRVR----HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       151 ~~~~----~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      +..-    .+++.|-+-|+|++++| .|  +++ +-...                 .-+-|+                 .
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g-~~--l~V-y~~~k-----------------~~k~W~-----------------~  468 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAG-SD--LQV-YICKK-----------------KTKSWT-----------------E  468 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeec-ce--eEE-EEEec-----------------ccccce-----------------e
Confidence            3222    25666888899976665 34  455 33320                 001121                 2


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                      +..+.-|++  ....|.|..+-+.+++++ +..+.+|
T Consensus       469 ~~~~~~~sg--~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  469 IKELADHSG--LSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eehhhhccc--ccceeeecccceEEeeccchhheEEe
Confidence            233344444  678889999999999987 4344444

>KOG0269|consensus

Probab=99.25  E-value=2.7e-11  Score=125.18  Aligned_cols=202  Identities=11%  Similarity=0.157  Sum_probs=134.7

Q ss_pred             CcccCCCcEEEeeccc---ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFN---LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~---g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      |+++..|.|-+||++.   .+++..|..|...|..+.|++---.                                    
T Consensus       104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~------------------------------------  147 (839)
T KOG0269|consen  104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN------------------------------------  147 (839)
T ss_pred             eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc------------------------------------
Confidence            6889999999999986   6788899999999999999983222                                    


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCC--Ccccee
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDN--FSQKLR  152 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~--~~~~~~  152 (330)
                          +++|+++|++||+|+..-.. ..++.+.+++++|    |.|+|-+.  .+++..++.  +..|.+..+  ....+.
T Consensus       148 ----iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD----V~fsp~~~~~F~s~~dsG~--lqlWDlRqp~r~~~k~~  217 (839)
T KOG0269|consen  148 ----ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD----VKFSPGYGNKFASIHDSGY--LQLWDLRQPDRCEKKLT  217 (839)
T ss_pred             ----EEEecCCCceEEEEeeecccccccccccchhhhc----eeeccCCCceEEEecCCce--EEEeeccCchhHHHHhh
Confidence                46999999999999986544 4445587777776    77777665  443233333  334444332  222334


Q ss_pred             ee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe-HHHHHhh---------hccCCCcEEE
Q psy682          153 VR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS-ISLAWKN---------CQRDTSDVKV  219 (330)
Q Consensus       153 ~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS-t~~lW~~---------SgS~Dgtvkl  219 (330)
                      .|   ..|+..+|++.+ ||+|+.|++||| |+..+++.-..+.=|.   +++ +..-|+-         |--.|-.|.+
T Consensus       218 AH~GpV~c~nwhPnr~~-lATGGRDK~vki-Wd~t~~~~~~~~tInT---iapv~rVkWRP~~~~hLAtcsmv~dtsV~V  292 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPNREW-LATGGRDKMVKI-WDMTDSRAKPKHTINT---IAPVGRVKWRPARSYHLATCSMVVDTSVHV  292 (839)
T ss_pred             cccCceEEEeecCCCce-eeecCCCccEEE-EeccCCCccceeEEee---cceeeeeeeccCccchhhhhhccccceEEE
Confidence            44   368889998888 566669999999 9996544322111111   222 2222333         3445788999


Q ss_pred             EcccCcee--eecCCCCCCCCCcEEEeCC-CccEEEEcc
Q psy682          220 HTTFGDLL--RSLDPPSGFASPESVVMSR-EGVIVVNYE  255 (330)
Q Consensus       220 ~~~~G~ll--~tL~~h~~~~~v~~v~fS~-dG~~l~s~~  255 (330)
                      |++.-.++  +++..|.+  .|..+++-. |-..+-+.+
T Consensus       293 WDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~s  329 (839)
T KOG0269|consen  293 WDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCS  329 (839)
T ss_pred             EeeccccccceeeeccCc--cccceeccCCCceeeEeec
Confidence            99876554  78888888  777777643 334444544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1e-10  Score=116.89  Aligned_cols=227  Identities=12%  Similarity=-0.009  Sum_probs=124.2

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecC-ccEEEEEeCCCCCeeEee----eccceeccC
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLD-DVCMSLKFPSNSPICHVT----ANTYVTLHM   78 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~-d~~~~v~Fs~~~~v~~~~----~~~~~~~~~   78 (330)
                      .+.+|.+||. +|...+.+..|...|.+++|||||+.  +.+.. ... ..++.+... .++...+.    .+..+.+++
T Consensus       182 ~~~~i~i~d~-dg~~~~~lt~~~~~v~~p~wSPDG~~--la~~s~~~~~~~i~i~dl~-tg~~~~l~~~~g~~~~~~wSP  257 (429)
T PRK01742        182 QPYEVRVADY-DGFNQFIVNRSSQPLMSPAWSPDGSK--LAYVSFENKKSQLVVHDLR-SGARKVVASFRGHNGAPAFSP  257 (429)
T ss_pred             ceEEEEEECC-CCCCceEeccCCCccccceEcCCCCE--EEEEEecCCCcEEEEEeCC-CCceEEEecCCCccCceeECC
Confidence            4679999998 45667788899999999999999987  11111 000 012111111 11100000    011233334


Q ss_pred             CcEE-EEEcCCcceEEEe--CCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccCCCCccceee
Q psy682           79 PSVV-TVTANHQFAINRW--NPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLGDNFSQKLRV  153 (330)
Q Consensus        79 ~~~v-~vS~~~~~tv~lW--~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~~~~~~~~~~  153 (330)
                      |+.. .++.+.++.+++|  +.++.....+.+|.    .......|+|||+ ++..+. ++...++.....+...+.+..
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~----~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~  333 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA----GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG  333 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC----CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence            4322 2233445555555  55666666665554    2456799999999 443221 222233333322211111111


Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC--CcEEEe--HHHHHhhhccCCCcEEEE---cccCce
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP--NRLFSS--ISLAWKNCQRDTSDVKVH---TTFGDL  226 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~--d~ViaS--t~~lW~~SgS~Dgtvkl~---~~~G~l  226 (330)
                      ...+.+++|||++|+.++ .++ +-+ |++.+|+......++.  ...++.  ...+   .++.||.+++|   +.+|+.
T Consensus       334 ~~~~~~~SpDG~~ia~~~-~~~-i~~-~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~---~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        334 RGYSAQISADGKTLVMIN-GDN-VVK-QDLTSGSTEVLSSTFLDESPSISPNGIMII---YSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             CCCCccCCCCCCEEEEEc-CCC-EEE-EECCCCCeEEecCCCCCCCceECCCCCEEE---EEEcCCCceEEEEEECCCCc
Confidence            113456899999976665 355 445 7887776542222221  112332  2222   56668888775   358999


Q ss_pred             eeecCCCCCCCCCcEEEeCCC
Q psy682          227 LRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~d  247 (330)
                      +++|.+|.+  .+..++|||-
T Consensus       408 ~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        408 KARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             eEEccCCCC--CCCCcccCCC
Confidence            999999888  8889999973

>KOG0647|consensus

Probab=99.23  E-value=3.6e-10  Score=106.81  Aligned_cols=234  Identities=14%  Similarity=0.088  Sum_probs=143.3

Q ss_pred             CcccCCCcEEEeeccc-cccc-ceeecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCCCCCeeEeeeccce---
Q psy682            1 MSGGDKGIVEVWRTFN-LALL-YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPSNSPICHVTANTYV---   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l-~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~~~~v~~~~~~~~~---   74 (330)
                      +.||.||+||+|++++ |++. +....|.+.|.++++|-||..    .+.+.-| .+-.+-..++ |+.-|+++.-+   
T Consensus        44 ~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgsk----Vf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt  118 (347)
T KOG0647|consen   44 AAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSK----VFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKT  118 (347)
T ss_pred             EecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCce----EEeeccCCceEEEEccCC-CeeeeeecccceeE
Confidence            4689999999999987 4433 457899999999999999976    3332222 2222222222 44444443331   


Q ss_pred             -e--ccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc--
Q psy682           75 -T--LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ--  149 (330)
Q Consensus        75 -~--~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~--  149 (330)
                       +  -.+....+||++.|+|+|.|+........    +-...+.+++.....+.. ++++  ....+....|.++..+  
T Consensus       119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~----t~~LPeRvYa~Dv~~pm~-vVat--a~r~i~vynL~n~~te~k  191 (347)
T KOG0647|consen  119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA----TLQLPERVYAADVLYPMA-VVAT--AERHIAVYNLENPPTEFK  191 (347)
T ss_pred             EEEecCCCcceeEecccccceeecccCCCCeee----eeeccceeeehhccCcee-EEEe--cCCcEEEEEcCCCcchhh
Confidence             0  01223467999999999999986443221    112234455555554444 2212  2333445555333211  


Q ss_pred             ----ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccc--cccccccCCC------CcE-------EEe---HHHHH
Q psy682          150 ----KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDHP------NRL-------FSS---ISLAW  207 (330)
Q Consensus       150 ----~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH~------d~V-------iaS---t~~lW  207 (330)
                          -+.-...|++.-.|.+. ++-|+-.+.+-+ ..++.+  +---++.-|.      +.|       |..   |+.  
T Consensus       192 ~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~i-q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv--  267 (347)
T KOG0647|consen  192 RIESPLKWQTRCVACFQDKDG-FALGSIEGRVAI-QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV--  267 (347)
T ss_pred             hhcCcccceeeEEEEEecCCc-eEeeeecceEEE-EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEE--
Confidence                13333468888888876 566778887777 777765  2222233333      223       111   332  


Q ss_pred             hhhccCCCcEEEEcccC-ceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          208 KNCQRDTSDVKVHTTFG-DLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~~G-~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                        +++.|||.-.|+.+- .-|++-+.|..  +|.+.+|+.+|.+.|++
T Consensus       268 --TaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  268 --TAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYA  311 (347)
T ss_pred             --EecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEE
Confidence              678899999998753 44667777777  99999999999999998

>KOG4378|consensus

Probab=99.22  E-value=1.8e-10  Score=114.57  Aligned_cols=201  Identities=15%  Similarity=0.226  Sum_probs=141.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc----------------Ccce--eee-ecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY----------------SPMM--FST-VLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~----------------~~l~--~~~-~~~d~~~~v~Fs~   61 (330)
                      ++|+..++|||||+....-++-+++|++-|..|.++-...+                .-..  .+. +..+.|.-++|||
T Consensus        95 ~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen   95 ISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP  174 (673)
T ss_pred             eccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence            47899999999999853344558999999999999876655                0011  122 4456677888888


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      -...+                +++++.+++|++|+.++..    +-|                   -            +
T Consensus       175 skr~l----------------L~~asd~G~VtlwDv~g~s----p~~-------------------~------------~  203 (673)
T KOG4378|consen  175 SKRFL----------------LSIASDKGAVTLWDVQGMS----PIF-------------------H------------A  203 (673)
T ss_pred             cccee----------------eEeeccCCeEEEEeccCCC----ccc-------------------c------------h
Confidence            88775                7889999999999997741    000                   0            0


Q ss_pred             ccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEE
Q psy682          142 HLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK  218 (330)
Q Consensus       142 ~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvk  218 (330)
                               .+.|+   .-++|+|-.+.|+++-..|+.|-+ ++....+...+|.                 .       
T Consensus       204 ---------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~-yD~~s~~s~~~l~-----------------y-------  249 (673)
T KOG4378|consen  204 ---------SEAHSAPCRGICFSPSNEALLVSVGYDKKINI-YDIRSQASTDRLT-----------------Y-------  249 (673)
T ss_pred             ---------hhhccCCcCcceecCCccceEEEecccceEEE-eecccccccceee-----------------e-------
Confidence                     11121   234589988887887778998888 8874322222110                 0       


Q ss_pred             EEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCce--eeeccCc-cccccccccccchhhhhcc
Q psy682          219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR--LRHESHN-DNLQELIPELFFLPEMLVN  294 (330)
Q Consensus       219 l~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~--las~~~~-~dVkELipef~~~p~~l~n  294 (330)
                                     +  ++...|+|+++|.+|+.| ++|.++.|.+.|+.  ++....| ..|.++  .|-+.| ..++
T Consensus       250 ---------------~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v--afq~s~-tvlt  309 (673)
T KOG4378|consen  250 ---------------S--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV--AFQPSP-TVLT  309 (673)
T ss_pred             ---------------c--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE--Eeeecc-eeee
Confidence                           0  278899999999999999 69999999999875  4555533 346665  677777 7778


Q ss_pred             cCCCccccccCC
Q psy682          295 SNGYCLGKTEDN  306 (330)
Q Consensus       295 ~~~~~~g~~~~g  306 (330)
                      +.++..|+.+..
T Consensus       310 kssln~G~~~~~  321 (673)
T KOG4378|consen  310 KSSLNSGDNQQN  321 (673)
T ss_pred             ccccccCccCCC
Confidence            888889998743

>KOG0321|consensus

Probab=99.22  E-value=8.8e-11  Score=119.43  Aligned_cols=200  Identities=11%  Similarity=0.028  Sum_probs=130.8

Q ss_pred             CcccCCCcEEEeecccccccce--eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA--FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t--l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      ++++.|.|||+|+++.+++...  +.||++.|.++||.|+.+.                                     
T Consensus       116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~-------------------------------------  158 (720)
T KOG0321|consen  116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA-------------------------------------  158 (720)
T ss_pred             EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCc-------------------------------------
Confidence            4788999999999999888877  9999999999999997555                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcc--------cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccc
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASI--------QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  150 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~--------~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~  150 (330)
                         +.|++++|+.|.||+..-....        ...+|.+.           |          ...+...++........
T Consensus       159 ---vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~-----------p----------tpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  159 ---VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA-----------P----------TPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ---ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC-----------C----------CCCchhhcccccccccc
Confidence               5699999999999998432200        00122110           0          01111222222222211


Q ss_pred             eeeee-eEEEEecCCCeEEEeeccCCeEEEeeeccccc------ccc--cccCCCCc-E--------------EEe----
Q psy682          151 LRVRH-NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA------LQE--GKFDHPNR-L--------------FSS----  202 (330)
Q Consensus       151 ~~~~~-~~~~~spDg~~i~asg~~D~tirl~w~~~~g~------l~~--~l~gH~d~-V--------------iaS----  202 (330)
                      ..+.+ ..+.+.-|.-.|++||-.|++||+ |++.+-.      ..+  .+--|..+ +              +||    
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKV-WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKV-WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEE-EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            22221 235566788787888877999999 9996421      111  11112111 1              343    


Q ss_pred             HHHHHhh---------------------------------hccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeC--
Q psy682          203 ISLAWKN---------------------------------CQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMS--  245 (330)
Q Consensus       203 t~~lW~~---------------------------------SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS--  245 (330)
                      +|..|+.                                 |||.|.-+-+|.++  -.-...|.||.-  .|..|+..  
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~--eVt~V~w~pS  371 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR--EVTTVRWLPS  371 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce--EEEEEeeccc
Confidence            5555655                                 99999999999764  344567888888  89999887  


Q ss_pred             CCccEEEEccCCeEEEEee
Q psy682          246 REGVIVVNYERGHIAAFTM  264 (330)
Q Consensus       246 ~dG~~l~s~~~~~~~~~s~  264 (330)
                      +++.++.+.+|-++++|.+
T Consensus       372 ~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             cCCCceeeccCcceEEEec
Confidence            5688888866778999976

>KOG1063|consensus

Probab=99.21  E-value=1.9e-10  Score=117.90  Aligned_cols=103  Identities=9%  Similarity=0.003  Sum_probs=80.9

Q ss_pred             eEEEEecCCCeEEEeeccCC-----eEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcccC
Q psy682          156 NCFVTTVDSRFLLACGFWDN-----SFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTTFG  224 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~-----tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~~G  224 (330)
                      .|++.+|+|++|++|. .-.     -|+| |++.+.+.++.|.+|+=.|    |+.  +.+|   |.|+|+|+.||+..-
T Consensus       529 ~~l~~s~~gnliASaC-KS~~~ehAvI~l-w~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL---svsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  529 YALAISPTGNLIASAC-KSSLKEHAVIRL-WNTANWLQVQELEGHSLTVTRLAFSPDGRYLL---SVSRDRTVSLYEVQE  603 (764)
T ss_pred             EEEEecCCCCEEeehh-hhCCccceEEEE-EeccchhhhheecccceEEEEEEECCCCcEEE---EeecCceEEeeeeec
Confidence            4788999999854433 222     3899 9999888999999999877    232  7777   999999999998631


Q ss_pred             -----ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          225 -----DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       225 -----~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                           .-...++.|+-  .|+...++||++..|++| |++++.|..+
T Consensus       604 ~~~~e~~fa~~k~HtR--IIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  604 DIKDEFRFACLKAHTR--IIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             ccchhhhhccccccce--EEEEcccCcccceeEEecCCceEEEEecc
Confidence                 12334788988  899999999999999998 6678888754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.20  E-value=7.3e-10  Score=101.40  Aligned_cols=218  Identities=21%  Similarity=0.264  Sum_probs=147.4

Q ss_pred             cccCCCcEEEeeccccc-ccceeecCCC-ceeEEEe-CCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            2 SGGDKGIVEVWRTFNLA-LLYAFPSCDS-SVRSLAL-SHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~-~l~tl~gH~~-~V~svaf-Spdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      .++.|+.|++|+...+. .+..+.++.. .+..+.+ ++++..                                     
T Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  124 (466)
T COG2319          82 SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-------------------------------------  124 (466)
T ss_pred             EecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-------------------------------------
Confidence            35578999999987765 6666666443 5555555 454431                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCC--CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeee
Q psy682           79 PSVVTVTANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVR  154 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~--~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~  154 (330)
                        .+....+.++++++|+...  .......+|.+    .+..+.|++++. ++..+. .+..+..|.... .....+..+
T Consensus       125 --~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  197 (466)
T COG2319         125 --ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE----SVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGH  197 (466)
T ss_pred             --EEeccCCCCccEEEEEecCCCeEEEEEecCcc----cEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccC
Confidence              1345566688999999975  55566668874    445799999998 443221 133334444432 222333332


Q ss_pred             ---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccc-cccCCCCcE---EEe--HHHHHhhhccCCCcEEEEccc--
Q psy682          155 ---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE-GKFDHPNRL---FSS--ISLAWKNCQRDTSDVKVHTTF--  223 (330)
Q Consensus       155 ---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~-~l~gH~d~V---iaS--t~~lW~~SgS~Dgtvkl~~~~--  223 (330)
                         ..+++++|+++.++++++.|++|++ |+...++... .+.+|.+.+   +..  ...+   +++.|+++++|+..  
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~  273 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRL-WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA---SGSSDGTIRLWDLRSS  273 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEE-EECCCCcEEeeecCCCCcceeEeECCCCCEEE---EecCCCcEEEeeecCC
Confidence               2578889999855676678999999 9887788887 799999984   222  1222   79999999999764  


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCcee
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRL  269 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~l  269 (330)
                      ...+..+.+|..  .|.++.|+|++..+++++ ++.+..|.......
T Consensus       274 ~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         274 SSLLRTLSGHSS--SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             CcEEEEEecCCc--cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence            223556677766  999999999999888873 56678886554443

>KOG0642|consensus

Probab=99.19  E-value=2.2e-10  Score=115.24  Aligned_cols=59  Identities=12%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             hccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceee
Q psy682          210 CQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLR  270 (330)
Q Consensus       210 SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~la  270 (330)
                      ++-.|++|++.+ .+|+++.....|..  .|.++++-|.|-.|++++ ++++.+|..+-+...
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ecccCCceecccccccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccchhee
Confidence            677899999985 58999999999999  999999999999999996 888999987765443

>KOG0270|consensus

Probab=99.18  E-value=4.4e-10  Score=110.43  Aligned_cols=177  Identities=11%  Similarity=-0.002  Sum_probs=119.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ||||.|+||+|||+++|+.-.++..|...|.+++|.|..-.                                       
T Consensus       260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---------------------------------------  300 (463)
T KOG0270|consen  260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPS---------------------------------------  300 (463)
T ss_pred             EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCce---------------------------------------
Confidence            79999999999999999999999999999999999884222                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                       ++.+++.|++|++-+....      +++                            -..|+..+        ....++.
T Consensus       301 -~LLsGs~D~~V~l~D~R~~------~~s----------------------------~~~wk~~g--------~VEkv~w  337 (463)
T KOG0270|consen  301 -VLLSGSYDGTVALKDCRDP------SNS----------------------------GKEWKFDG--------EVEKVAW  337 (463)
T ss_pred             -EEEeccccceEEeeeccCc------ccc----------------------------CceEEecc--------ceEEEEe
Confidence             5799999999999988321      111                            12233211        1223444


Q ss_pred             ecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcE--EE-e----HHHHHhhhccCCCcEEEEcccCceeeecCC
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRL--FS-S----ISLAWKNCQRDTSDVKVHTTFGDLLRSLDP  232 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~V--ia-S----t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~  232 (330)
                      .|-+...+.+|.-|+++|- ++... |+++-++..|.+.|  +. +    -...   ++|.|++||||+..+.--+.-..
T Consensus       338 ~~~se~~f~~~tddG~v~~-~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~---t~s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  338 DPHSENSFFVSTDDGTVYY-FDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS---TASTDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             cCCCceeEEEecCCceEEe-eecCCCCCceeEEEeccCCcceEEecCCCCccee---eccccceEEEEeecCCCCccccc
Confidence            5555555667788999998 88654 68999999999988  21 1    2222   79999999999875443333333


Q ss_pred             CCCC-CCCcEEEeCCC-ccEEEEc-cCCeEEEEe
Q psy682          233 PSGF-ASPESVVMSRE-GVIVVNY-ERGHIAAFT  263 (330)
Q Consensus       233 h~~~-~~v~~v~fS~d-G~~l~s~-~~~~~~~~s  263 (330)
                      |.-. ++..+.++-|| --++|.| .+..++.|.
T Consensus       414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             ccccccceeecccCCCcceEEEecCccceEEEee
Confidence            3221 23445555566 2234444 466677775

>KOG0643|consensus

Probab=99.17  E-value=2.6e-10  Score=106.44  Aligned_cols=212  Identities=9%  Similarity=0.084  Sum_probs=124.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceee--eecCccEEEEEe-------CCCCCeeEeeec
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFS--TVLDDVCMSLKF-------PSNSPICHVTAN   71 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~--~~~~d~~~~v~F-------s~~~~v~~~~~~   71 (330)
                      +||+.|.++||||+.+|+.+.+++ -...|+.+.||++|++....+-  -+.+..|.....       .++.|++.+..+
T Consensus        68 iTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~  146 (327)
T KOG0643|consen   68 ITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP  146 (327)
T ss_pred             eeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence            589999999999999999999987 4578999999999998111000  011111111111       123333333322


Q ss_pred             cc----eeccCCcEEEEEcCCcceEEEeCCCCC-CcccC-CCCCCCCCCCCCCccccCCCce-eccCCCCCCCcceeccC
Q psy682           72 TY----VTLHMPSVVTVTANHQFAINRWNPDYA-ASIQS-PSYAETPGSPPGNLPLTLDPIL-THPTSNNNAPVPKRHLG  144 (330)
Q Consensus        72 ~~----~~~~~~~~v~vS~~~~~tv~lW~~~~~-~~~~~-~~h~~~~~~~~~~l~fs~D~~l-~~~s~~~~~~~~~~~l~  144 (330)
                      ..    .-..+-+..++++..++.|.+|+...+ ++..+ .-|+.    ..+.+.|++|..+ .++|-+.+.+++....-
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~----~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSS----KINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcc----ccccccccCCcceEEecccCccceeeeccce
Confidence            21    223444556799999999999998654 34443 36763    5667999999994 44445554444322210


Q ss_pred             CCCcccee--eeeeEEEEecCCCeEEEeeccCCeEEE-e------------eecccccccccccCCCCcE----EEe--H
Q psy682          145 DNFSQKLR--VRHNCFVTTVDSRFLLACGFWDNSFRE-P------------FTTMYLALQEGKFDHPNRL----FSS--I  203 (330)
Q Consensus       145 ~~~~~~~~--~~~~~~~~spDg~~i~asg~~D~tirl-~------------w~~~~g~l~~~l~gH~d~V----iaS--t  203 (330)
                      .. ..++.  .-.|+.+++|-...++-.|.-+- .-+ -            +.+-.-+.+..+.||-..|    |.+  +
T Consensus       223 ~v-~Kty~te~PvN~aaisP~~d~VilgGGqeA-~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk  300 (327)
T KOG0643|consen  223 EV-LKTYTTERPVNTAAISPLLDHVILGGGQEA-MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK  300 (327)
T ss_pred             ee-EEEeeecccccceecccccceEEecCCcee-eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence            00 01111  11278889997777555554332 222 0            1111123466677777776    333  3


Q ss_pred             HHHHhhhccCCCcEEEEcc
Q psy682          204 SLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       204 ~~lW~~SgS~Dgtvkl~~~  222 (330)
                      .-.   ||..||.|+||.-
T Consensus       301 sYs---SGGEDG~VR~h~F  316 (327)
T KOG0643|consen  301 SYS---SGGEDGYVRLHHF  316 (327)
T ss_pred             ccc---cCCCCceEEEEEe
Confidence            333   9999999999853

>KOG0269|consensus

Probab=99.17  E-value=5.2e-11  Score=123.15  Aligned_cols=160  Identities=15%  Similarity=0.125  Sum_probs=111.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------------------CcceeeeecCccEEEEEeC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDDVCMSLKFP   60 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d~~~~v~Fs   60 (330)
                      +|||.||+||+||+...+-..++.+.+..|++|+|||--..                    .+..-++.|...|+.+.++
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh  229 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH  229 (839)
T ss_pred             EecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec
Confidence            48999999999999988889999999999999999994322                    1111234566666666666


Q ss_pred             CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcce
Q psy682           61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPK  140 (330)
Q Consensus        61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~  140 (330)
                      ||..+                 +||+++|++||+|+.++.+...                                 +..
T Consensus       230 Pnr~~-----------------lATGGRDK~vkiWd~t~~~~~~---------------------------------~~t  259 (839)
T KOG0269|consen  230 PNREW-----------------LATGGRDKMVKIWDMTDSRAKP---------------------------------KHT  259 (839)
T ss_pred             CCCce-----------------eeecCCCccEEEEeccCCCccc---------------------------------eeE
Confidence            66665                 5999999999999996542111                                 111


Q ss_pred             eccCCCCccceeeeeeEEEEecCCCeEEEeec--cCCeEEEeeeccccc--ccccccCCCCcE--EE--e--HHHHHhhh
Q psy682          141 RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGF--WDNSFREPFTTMYLA--LQEGKFDHPNRL--FS--S--ISLAWKNC  210 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~--~D~tirl~w~~~~g~--l~~~l~gH~d~V--ia--S--t~~lW~~S  210 (330)
                      .+..-+        ..++.+-|+-++.+|+.+  -|.+|+| |++. ..  ...++.-|.|.|  ++  +  +..+|  |
T Consensus       260 InTiap--------v~rVkWRP~~~~hLAtcsmv~dtsV~V-WDvr-RPYIP~~t~~eH~~~vt~i~W~~~d~~~l~--s  327 (839)
T KOG0269|consen  260 INTIAP--------VGRVKWRPARSYHLATCSMVVDTSVHV-WDVR-RPYIPYATFLEHTDSVTGIAWDSGDRINLW--S  327 (839)
T ss_pred             Eeecce--------eeeeeeccCccchhhhhhccccceEEE-Eeec-cccccceeeeccCccccceeccCCCceeeE--e
Confidence            111111        146777777777666543  3678999 9994 33  467788899877  32  3  55555  7


Q ss_pred             ccCCCcEEEEcc
Q psy682          211 QRDTSDVKVHTT  222 (330)
Q Consensus       211 gS~Dgtvkl~~~  222 (330)
                      +|+||||..|..
T Consensus       328 ~sKD~tv~qh~~  339 (839)
T KOG0269|consen  328 CSKDGTVLQHLF  339 (839)
T ss_pred             ecCccHHHHhhh
Confidence            899999988753

>KOG1063|consensus

Probab=99.16  E-value=6.4e-11  Score=121.30  Aligned_cols=214  Identities=12%  Similarity=0.106  Sum_probs=146.5

Q ss_pred             cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      |....|-+|+..+-.-..+++||.+.|+++.+=|+.+..+                                      ..
T Consensus        31 Ga~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a--------------------------------------~~   72 (764)
T KOG1063|consen   31 GAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVA--------------------------------------EM   72 (764)
T ss_pred             cCCceEEEeCcccceeEEeccCCccceEEEEEcccccccc--------------------------------------eE
Confidence            3456788888876556677899999998888887655300                                      35


Q ss_pred             EEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCceecc-CCCCCCCcceeccCCC-Cccceeee----
Q psy682           84 VTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPILTHP-TSNNNAPVPKRHLGDN-FSQKLRVR----  154 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~l~~~-s~~~~~~~~~~~l~~~-~~~~~~~~----  154 (330)
                      +|++.|+.|.+|......   +.+.++|.      ..++.++..+...++ ++++....|+.+-.+- +.+.++..    
T Consensus        73 vsG~sD~~v~lW~l~~~~~~~i~~~~g~~------~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~  146 (764)
T KOG1063|consen   73 VSGDSDGRVILWKLRDEYLIKIYTIQGHC------KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEA  146 (764)
T ss_pred             EEccCCCcEEEEEEeehheEEEEeecCcc------eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhH
Confidence            999999999999986443   44555664      345666666663322 4555555555532220 11222222    


Q ss_pred             -eeEEEEec-CCCeEEEeeccCCeEEEeeecccc--cccccccCCCCcE--EEe-------HHHHHhhhccCCCcEEEEc
Q psy682          155 -HNCFVTTV-DSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDHPNRL--FSS-------ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       155 -~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH~d~V--iaS-------t~~lW~~SgS~Dgtvkl~~  221 (330)
                       ..|+++.+ .+.+++|+|..|..|.+ ..-..+  +....+.||.|.|  ++.       +..+   |+|.|..||||.
T Consensus       147 ipLcL~~~~~~~~~lla~Ggs~~~v~~-~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la---S~SQD~yIRiW~  222 (764)
T KOG1063|consen  147 IPLCLAALKNNKTFLLACGGSKFVVDL-YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA---SSSQDRYIRIWR  222 (764)
T ss_pred             hhHHHhhhccCCcEEEEecCcceEEEE-eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE---ecCCceEEEEEE
Confidence             25777777 78889999999999998 766444  3577899999999  321       3333   999999999996


Q ss_pred             c--cC--------------------cee---e------e-cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          222 T--FG--------------------DLL---R------S-LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       222 ~--~G--------------------~ll---~------t-L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      .  .|                    ..+   +      + |-||++  .|++|-++|+|..|.|++ |.+++.|-++-+
T Consensus       223 i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD--WV~sv~W~p~~~~LLSASaDksmiiW~pd~~  299 (764)
T KOG1063|consen  223 IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED--WVYSVWWHPEGLDLLSASADKSMIIWKPDEN  299 (764)
T ss_pred             EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc--ceEEEEEccchhhheecccCcceEEEecCCc
Confidence            4  22                    111   1      2 239999  999999999997777775 888888887754

>KOG0640|consensus

Probab=99.15  E-value=3.5e-10  Score=107.47  Aligned_cols=228  Identities=7%  Similarity=0.056  Sum_probs=151.5

Q ss_pred             CcccCCCcEEEeecc------------------cccccceeecCCCceeEEEeCCCCCc-------Ccceeee-------
Q psy682            1 MSGGDKGIVEVWRTF------------------NLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFST-------   48 (330)
Q Consensus         1 asgs~d~~V~lW~~~------------------~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~~-------   48 (330)
                      |+||.|-.|||-++.                  ....++||-.|.+.|+.+.|.|-.++       +.++++.       
T Consensus       128 ATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK  207 (430)
T KOG0640|consen  128 ATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK  207 (430)
T ss_pred             EccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH
Confidence            689999999999875                  12568899999999999999998877       2222211       


Q ss_pred             ------ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc--ccCC--CCCCCCCCCCCC
Q psy682           49 ------VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS--IQSP--SYAETPGSPPGN  118 (330)
Q Consensus        49 ------~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~--~~~~--~h~~~~~~~~~~  118 (330)
                            .....|.++.|+|.|..+                 .-+...-++++++.++-+.  .--|  +|++    .+.+
T Consensus       208 rA~K~~qd~~~vrsiSfHPsGefl-----------------lvgTdHp~~rlYdv~T~QcfvsanPd~qht~----ai~~  266 (430)
T KOG0640|consen  208 RAFKVFQDTEPVRSISFHPSGEFL-----------------LVGTDHPTLRLYDVNTYQCFVSANPDDQHTG----AITQ  266 (430)
T ss_pred             HHHHHhhccceeeeEeecCCCceE-----------------EEecCCCceeEEeccceeEeeecCccccccc----ceeE
Confidence                  223467889999999986                 4445566788988865442  1112  6764    6677


Q ss_pred             ccccCCCc-eeccCCCCCCCcce----eccCCCCccceeeee-eEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          119 LPLTLDPI-LTHPTSNNNAPVPK----RHLGDNFSQKLRVRH-NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       119 l~fs~D~~-l~~~s~~~~~~~~~----~~l~~~~~~~~~~~~-~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      +..|+.+. ++++|.++..++|.    |.+.. +...--+.. -+..|+-+||||+++| .|.++|| |.+.+|+.++..
T Consensus       267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t-~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkL-WEi~t~R~l~~Y  343 (430)
T KOG0640|consen  267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT-IGNAHGGSEVCSAVFTKNGKYILSSG-KDSTVKL-WEISTGRMLKEY  343 (430)
T ss_pred             EEecCCccEEEEeccCCcEEeeccccHHHHHH-HHhhcCCceeeeEEEccCCeEEeecC-Ccceeee-eeecCCceEEEE
Confidence            99999999 88888888877762    21100 100000111 2455999999999998 7999999 999999887766


Q ss_pred             cCCC-----------------CcEEEeHHHHHhhhccCCCcEEEEcc-cCceeeec-CCCCCCCCCcEEEeCCCccEEEE
Q psy682          193 FDHP-----------------NRLFSSISLAWKNCQRDTSDVKVHTT-FGDLLRSL-DPPSGFASPESVVMSREGVIVVN  253 (330)
Q Consensus       193 ~gH~-----------------d~ViaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL-~~h~~~~~v~~v~fS~dG~~l~s  253 (330)
                      .|-.                 |.|+..-.+    |+    .+--|+. +++-++-+ .||.+  .|+.|.-||.+--..+
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----s~----slcsWdaRtadr~~l~slgHn~--a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----SN----SLCSWDARTADRVALLSLGHNG--AVRWIVHSPVEPAFMT  413 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEccccc----cC----ceeeccccchhhhhhcccCCCC--CceEEEeCCCCCceee
Confidence            6541                 112221110    11    1223653 44433333 36888  9999999999988877


Q ss_pred             cc-CCeEEEE
Q psy682          254 YE-RGHIAAF  262 (330)
Q Consensus       254 ~~-~~~~~~~  262 (330)
                      ++ |.+.+.|
T Consensus       414 csdD~raRFW  423 (430)
T KOG0640|consen  414 CSDDFRARFW  423 (430)
T ss_pred             ecccceeeee
Confidence            75 4455555

>KOG0308|consensus

Probab=99.15  E-value=1.5e-10  Score=118.08  Aligned_cols=189  Identities=12%  Similarity=0.152  Sum_probs=143.2

Q ss_pred             EEEEcCCcceEEEeCCCCCC-------cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC-cccee
Q psy682           82 VTVTANHQFAINRWNPDYAA-------SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF-SQKLR  152 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~-------~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~-~~~~~  152 (330)
                      .+-|+++|+.|++|+.++..       +.....|+    ++++-+.+--+++ +.++|++.+.++|..+....+ -.++.
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs----DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS----DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhH----hHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            47899999999999986443       22334676    5888899999996 778888888888866644321 23344


Q ss_pred             eee---eEEEE-ecCCCeEEEeeccCCeEEEeeecccc--cc--------ccccc-CCCCcE--EEe----HHHHHhhhc
Q psy682          153 VRH---NCFVT-TVDSRFLLACGFWDNSFREPFTTMYL--AL--------QEGKF-DHPNRL--FSS----ISLAWKNCQ  211 (330)
Q Consensus       153 ~~~---~~~~~-spDg~~i~asg~~D~tirl~w~~~~g--~l--------~~~l~-gH~d~V--iaS----t~~lW~~Sg  211 (330)
                      -|.   .|++. .++.. ++|+|+-|+.|.| |++++|  ++        .+.+. ||.+.|  +|.    |+.+   +|
T Consensus       115 ~H~DYVkcla~~ak~~~-lvaSgGLD~~Ifl-WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv---sG  189 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNE-LVASGGLDRKIFL-WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV---SG  189 (735)
T ss_pred             cccchheeeeecccCce-eEEecCCCccEEE-EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE---ec
Confidence            443   58887 55665 5888889999999 999977  22        33344 888887  442    5777   99


Q ss_pred             cCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCc-eeeeccCccc-cccc
Q psy682          212 RDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN-RLRHESHNDN-LQEL  281 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~-~las~~~~~d-VkEL  281 (330)
                      +-.+-+++|+- +++.+..|+||.+  -|..|..++||..++|+ ||++|.+|+.+-+ .|++...|.+ |..|
T Consensus       190 gtek~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  190 GTEKDLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             CcccceEEeccccccceeeeecccc--ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            99999999984 7999999999999  89999999999999999 5999999998865 4566665543 4444

>KOG1009|consensus

Probab=99.15  E-value=4.2e-10  Score=109.62  Aligned_cols=205  Identities=14%  Similarity=0.126  Sum_probs=114.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||+.|..||+|.++.++.-.     .+          +.+..+..++.|+..|..+.|+|+|.+               
T Consensus        30 aT~G~D~~iriW~v~r~~~~~-----~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gel---------------   79 (434)
T KOG1009|consen   30 ATAGGDKDIRIWKVNRSEPGG-----GD----------MKVEYLSSLSRHTRAVNVVRFSPDGEL---------------   79 (434)
T ss_pred             ecccCccceeeeeeeecCCCC-----Cc----------eeEEEeecccCCcceeEEEEEcCCcCe---------------
Confidence            689999999999987543211     00          111112223344444555555555554               


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc--eeccCCCCccceeeeeeEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP--KRHLGDNFSQKLRVRHNCF  158 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~--~~~l~~~~~~~~~~~~~~~  158 (330)
                        +||++.++.|.+|......+.                  -.|. -    +.-+...|  .+.++++..   .  ....
T Consensus        80 --LASg~D~g~v~lWk~~~~~~~------------------~~d~-e----~~~~ke~w~v~k~lr~h~~---d--iydL  129 (434)
T KOG1009|consen   80 --LASGGDGGEVFLWKQGDVRIF------------------DADT-E----ADLNKEKWVVKKVLRGHRD---D--IYDL  129 (434)
T ss_pred             --eeecCCCceEEEEEecCcCCc------------------cccc-h----hhhCccceEEEEEeccccc---c--hhhh
Confidence              599999999999998431100                  0001 0    00111122  222222211   0  1345


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe----HHHHHhhhccCCCcEEEEc-----------
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS----ISLAWKNCQRDTSDVKVHT-----------  221 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS----t~~lW~~SgS~Dgtvkl~~-----------  221 (330)
                      +-+||+.+ +.+|+-|+++++ |++..|++..++.+|...|  ++.    .-.+   +-|.|...+...           
T Consensus       130 ~Ws~d~~~-l~s~s~dns~~l-~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~---s~s~dr~~~~~~~~~~~~~~~~~  204 (434)
T KOG1009|consen  130 AWSPDSNF-LVSGSVDNSVRL-WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVA---SKSSDRHPEGFSAKLKQVIKRHG  204 (434)
T ss_pred             hccCCCce-eeeeeccceEEE-EEeccceeEeeccccccccceeecchhhhhhh---hhccCcccceeeeeeeeeeeeee
Confidence            58999999 666789999999 9999999999999999988  232    1111   334444222111           


Q ss_pred             -----------ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-----CCeE---EEEeeCCceee
Q psy682          222 -----------TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-----RGHI---AAFTMNGNRLR  270 (330)
Q Consensus       222 -----------~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-----~~~~---~~~s~nG~~la  270 (330)
                                 ..|+..|-+..-+...--+-++|+|||..|+..+     .+..   .+|...|+.|.
T Consensus       205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence                       1233333221111111345789999999999863     2222   45666677653

>KOG1407|consensus

Probab=99.15  E-value=5.8e-10  Score=103.77  Aligned_cols=199  Identities=12%  Similarity=0.087  Sum_probs=126.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+++.|++||+|+.-.++......--.+-+ -++.||||++    +                                  
T Consensus        81 atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~----~----------------------------------  121 (313)
T KOG1407|consen   81 ATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEY----I----------------------------------  121 (313)
T ss_pred             EEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCE----E----------------------------------
Confidence            578999999999999999887766555544 6788888888    2                                  


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCcccc--CCCceeccCCCCCCCcceeccCCCCccceeeee---
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLT--LDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs--~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---  155 (330)
                         +-+++|--|..-+......    .+.+.-.-.++.+.+.  .|...++ ++.+...+...---+| .++++.|.   
T Consensus       122 ---~~~~kdD~it~id~r~~~~----~~~~~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsypsLkp-v~si~AH~snC  192 (313)
T KOG1407|consen  122 ---AVGNKDDRITFIDARTYKI----VNEEQFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPSLKP-VQSIKAHPSNC  192 (313)
T ss_pred             ---EEecCcccEEEEEecccce----eehhcccceeeeeeecCCCCEEEEe-cCCceEEEEecccccc-ccccccCCcce
Confidence               2222222222222211110    0111111122233333  3333332 1213333332221122 25566664   


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-e---HHHHHhhhccCCCcEEE-EcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-S---ISLAWKNCQRDTSDVKV-HTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-S---t~~lW~~SgS~Dgtvkl-~~~~G~ll~  228 (330)
                      .|+.|+||||| +|.|+.|..+-| |+++.--..+.+..|.=.|  ++ |   ..++   |||.|.-|-| ...+|+-+.
T Consensus       193 icI~f~p~Gry-fA~GsADAlvSL-WD~~ELiC~R~isRldwpVRTlSFS~dg~~lA---SaSEDh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  193 ICIEFDPDGRY-FATGSADALVSL-WDVDELICERCISRLDWPVRTLSFSHDGRMLA---SASEDHFIDIAEVETGDRVW  267 (313)
T ss_pred             EEEEECCCCce-Eeeccccceeec-cChhHhhhheeeccccCceEEEEeccCcceee---ccCccceEEeEecccCCeEE
Confidence            47889999999 888999999999 9998776777777776556  21 2   5555   9999999999 677999988


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      .+. +.+  +-+.|++.|.-.+||.+.
T Consensus       268 eI~-~~~--~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  268 EIP-CEG--PTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             Eee-ccC--CceeEEecCCCceeeEEe
Confidence            875 344  789999999999999983

>KOG0267|consensus

Probab=99.15  E-value=5.6e-11  Score=122.20  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=104.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+||+||+..++.++||.||..-+.+|+|+|=|.+                  .+..+..+|..++..+.|+|+
T Consensus        86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~  165 (825)
T KOG0267|consen   86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD  165 (825)
T ss_pred             cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC
Confidence            57899999999999999999999999999999999997776                  233445578888999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      |.++                 ++++.|.++++|+...+. +..+.+|.+                               
T Consensus       166 Gr~v-----------------~~g~ed~tvki~d~~agk~~~ef~~~e~-------------------------------  197 (825)
T KOG0267|consen  166 GRWV-----------------ASGGEDNTVKIWDLTAGKLSKEFKSHEG-------------------------------  197 (825)
T ss_pred             Ccee-----------------eccCCcceeeeecccccccccccccccc-------------------------------
Confidence            9985                 888999999999985432 333334432                               


Q ss_pred             ccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682          142 HLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                                  ...++.|.|- +++++.|+.|+++|+ |++++=.++.......+.|
T Consensus       198 ------------~v~sle~hp~-e~Lla~Gs~d~tv~f-~dletfe~I~s~~~~~~~v  241 (825)
T KOG0267|consen  198 ------------KVQSLEFHPL-EVLLAPGSSDRTVRF-WDLETFEVISSGKPETDGV  241 (825)
T ss_pred             ------------cccccccCch-hhhhccCCCCceeee-eccceeEEeeccCCccCCc
Confidence                        1123334443 366889999999999 9998766666655555555

>KOG4283|consensus

Probab=99.14  E-value=2.2e-10  Score=108.19  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             eEEEeeccCCeEEEeeecccccccccccCCCCcEEE---eHHHHHhh-hccCCCcEEEEccc--CceeeecCCCCC----
Q psy682          166 FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---SISLAWKN-CQRDTSDVKVHTTF--GDLLRSLDPPSG----  235 (330)
Q Consensus       166 ~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---St~~lW~~-SgS~Dgtvkl~~~~--G~ll~tL~~h~~----  235 (330)
                      .|+|+|+.|-.||| =++..|...++|.||.+-|++   |+---|-+ +||.||+||+|+..  .-.+++|.-|.+    
T Consensus       159 cLiA~gtr~~~VrL-CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  159 CLIAAGTRDVQVRL-CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP  237 (397)
T ss_pred             eEEEEecCCCcEEE-EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence            47999999999999 999999999999999999965   22222222 99999999999852  123444444432    


Q ss_pred             --------CCCCcEEEeCCCccEEEEcc-CCeEEEE-eeCCc
Q psy682          236 --------FASPESVVMSREGVIVVNYE-RGHIAAF-TMNGN  267 (330)
Q Consensus       236 --------~~~v~~v~fS~dG~~l~s~~-~~~~~~~-s~nG~  267 (330)
                              ++.|+.++|+.||..+++.+ ++++..| +.+|+
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence                    13899999999999999975 6777777 44554

>KOG0294|consensus

Probab=99.14  E-value=1.4e-10  Score=110.07  Aligned_cols=169  Identities=17%  Similarity=0.188  Sum_probs=114.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      .||++||.|.+|+...=+++.+|++|.+.|+.|++.|-|++                                       
T Consensus       101 lS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL---------------------------------------  141 (362)
T KOG0294|consen  101 LSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL---------------------------------------  141 (362)
T ss_pred             eeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce---------------------------------------
Confidence            47999999999999888899999999999999999998888                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC--Ccc-ceeeeee
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN--FSQ-KLRVRHN  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~--~~~-~~~~~~~  156 (330)
                        ..|-++|..+++||+=.+..    +.--........+.|+|.|- +..   ...+++-.+++..-  |.. ..+.+..
T Consensus       142 --ALsVg~D~~lr~WNLV~Gr~----a~v~~L~~~at~v~w~~~Gd~F~v---~~~~~i~i~q~d~A~v~~~i~~~~r~l  212 (362)
T KOG0294|consen  142 --ALSVGGDQVLRTWNLVRGRV----AFVLNLKNKATLVSWSPQGDHFVV---SGRNKIDIYQLDNASVFREIENPKRIL  212 (362)
T ss_pred             --EEEEcCCceeeeehhhcCcc----ceeeccCCcceeeEEcCCCCEEEE---EeccEEEEEecccHhHhhhhhccccce
Confidence              24456677799999743320    00001112334588888887 332   12233333443211  100 0112233


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe------HHHHHhhhccCCCcEEEEccc
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS------ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS------t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      |.-|- ++.++++++ .|..|++ |+.+++.....+.+|..||  |++      +.++   ++|.||-|++|+.+
T Consensus       213 ~~~~l-~~~~L~vG~-d~~~i~~-~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv---TaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  213 CATFL-DGSELLVGG-DNEWISL-KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV---TASSDGFIKVWDID  281 (362)
T ss_pred             eeeec-CCceEEEec-CCceEEE-eccCCCccceeeecchhheeeeEEEecCCceEEE---EeccCceEEEEEcc
Confidence            53333 455656655 6999999 9999899999999999999  654      3455   99999999999864

>KOG1036|consensus

Probab=99.14  E-value=1.4e-09  Score=103.03  Aligned_cols=222  Identities=10%  Similarity=0.084  Sum_probs=142.2

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc----------------CcceeeeecCccEEEEEeCCCCCe
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY----------------SPMMFSTVLDDVCMSLKFPSNSPI   65 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~----------------~~l~~~~~~~d~~~~v~Fs~~~~v   65 (330)
                      .++.||++||+++..- .++-.--|...+.+-+|-++.+.                ..-.+.-.|++.+..+.+++-.-.
T Consensus        30 vssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~  108 (323)
T KOG1036|consen   30 VSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGC  108 (323)
T ss_pred             EEeccCcEEEEeccch-hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCe
Confidence            4679999999999764 44444569999999999996555                111123367777888888765443


Q ss_pred             eEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc---eec
Q psy682           66 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP---KRH  142 (330)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~---~~~  142 (330)
                                       .+|++.|.+||+|++...   +..+-.+.. .++++++..-|-.+.   +..+..+.   .|.
T Consensus       109 -----------------vIsgsWD~~ik~wD~R~~---~~~~~~d~~-kkVy~~~v~g~~LvV---g~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  109 -----------------VISGSWDKTIKFWDPRNK---VVVGTFDQG-KKVYCMDVSGNRLVV---GTSDRKVLIYDLRN  164 (323)
T ss_pred             -----------------EEEcccCccEEEEecccc---ccccccccC-ceEEEEeccCCEEEE---eecCceEEEEEccc
Confidence                             389999999999999642   111222222 367777776665544   22233333   445


Q ss_pred             cCCCC---ccceeeeeeEEEEecCCCeEEEeeccCCeEEE-eeecc----cc----cccccccCCCCcE-----E--Ee-
Q psy682          143 LGDNF---SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRE-PFTTM----YL----ALQEGKFDHPNRL-----F--SS-  202 (330)
Q Consensus       143 l~~~~---~~~~~~~~~~~~~spDg~~i~asg~~D~tirl-~w~~~----~g----~l~~~l~gH~d~V-----i--aS-  202 (330)
                      +..++   ...++....|+++-|.+.= +++++-|+.+-+ =++..    .-    |.+....+-.+.+     |  .. 
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            55555   3455666689999996665 788889997765 12221    00    1222222222222     1  11 


Q ss_pred             --HHHHHhhhccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          203 --ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                        |..    +|..||-|.+|+.. -+-|+.|.+-+.  +|.+++||.||..||-|+
T Consensus       244 ~~tfa----TgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  244 HGTFA----TGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             cceEE----ecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEe
Confidence              332    89999999999874 455666766656  899999999999999875

>KOG2055|consensus

Probab=99.14  E-value=5.3e-10  Score=110.41  Aligned_cols=204  Identities=12%  Similarity=0.103  Sum_probs=129.2

Q ss_pred             cccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            2 SGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      +|+.||++||+++. |+   +++.+.--...|...+|.|+|+.                                     
T Consensus       230 vaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~-------------------------------------  271 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHS-------------------------------------  271 (514)
T ss_pred             EecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCce-------------------------------------
Confidence            68999999999994 44   44444444455555555555543                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec-cCCCCccc--e
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH-LGDNFSQK--L  151 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~-l~~~~~~~--~  151 (330)
                         +++++++-.-...|++........   .|+.+   .....|.+|+|+. ++.  +|...-+...+ ..+.+..+  +
T Consensus       272 ---~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~---~~~e~FeVShd~~fia~--~G~~G~I~lLhakT~eli~s~Ki  343 (514)
T KOG2055|consen  272 ---VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE---KSMERFEVSHDSNFIAI--AGNNGHIHLLHAKTKELITSFKI  343 (514)
T ss_pred             ---EEEecccceEEEEeeccccccccccCCCCccc---chhheeEecCCCCeEEE--cccCceEEeehhhhhhhhheeee
Confidence               357788888889999966553333   35542   2345899999999 554  22222121111 11112222  3


Q ss_pred             eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EE-eHHHHHhhhccCCCcEEEEccc----
Q psy682          152 RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FS-SISLAWKNCQRDTSDVKVHTTF----  223 (330)
Q Consensus       152 ~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---ia-St~~lW~~SgS~Dgtvkl~~~~----  223 (330)
                      ++....|.|+.||+.|++|| .++-|-+ |++.+-+.++...+-..+-   ++ |--.-|--+||.-|-|-|++.+    
T Consensus       344 eG~v~~~~fsSdsk~l~~~~-~~GeV~v-~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASG-GTGEVYV-WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA  421 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEc-CCceEEE-EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence            44556788999999999998 4888998 9998666665554433221   22 2000122289999999999842    


Q ss_pred             ---CceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          224 ---GDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       224 ---G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                         =+.+.++.--..  .|++++|+||+|+||-+|
T Consensus       422 s~~PkPik~~dNLtt--~Itsl~Fn~d~qiLAiaS  454 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTT--AITSLQFNHDAQILAIAS  454 (514)
T ss_pred             cCCCCchhhhhhhhe--eeeeeeeCcchhhhhhhh
Confidence               344555444334  799999999999999886

>KOG2048|consensus

Probab=99.09  E-value=9.2e-10  Score=112.62  Aligned_cols=181  Identities=17%  Similarity=0.186  Sum_probs=128.3

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      |.+.+|+|.-||+.+++++..+..-.+.||++|.+|.+..                                        
T Consensus        85 S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~----------------------------------------  124 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTI----------------------------------------  124 (691)
T ss_pred             eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccce----------------------------------------
Confidence            6788999999999999999999999999999999996654                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEe
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT  161 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s  161 (330)
                       .+-+..++.++....                        +||.. .          ..|.+.   .  -+.+..++.+.
T Consensus       125 -l~IgcddGvl~~~s~------------------------~p~~I-~----------~~r~l~---r--q~sRvLslsw~  163 (691)
T KOG2048|consen  125 -LAIGCDDGVLYDFSI------------------------GPDKI-T----------YKRSLM---R--QKSRVLSLSWN  163 (691)
T ss_pred             -EEeecCCceEEEEec------------------------CCceE-E----------EEeecc---c--ccceEEEEEec
Confidence             122223332332222                        12211 1          123321   1  23456788899


Q ss_pred             cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-eHHHHHhh---------hccCCCcEEEEcc-cCceeeec
Q psy682          162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-SISLAWKN---------CQRDTSDVKVHTT-FGDLLRSL  230 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-St~~lW~~---------SgS~Dgtvkl~~~-~G~ll~tL  230 (330)
                      |++.. +++|+.|+.||+ |+..+|.-.....---|++=- .-+++|.+         ||-.-|||+.|+. +|.|+++.
T Consensus       164 ~~~~~-i~~Gs~Dg~Iri-wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~  241 (691)
T KOG2048|consen  164 PTGTK-IAGGSIDGVIRI-WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSH  241 (691)
T ss_pred             CCccE-EEecccCceEEE-EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhh
Confidence            99987 677889999999 999877644311111111100 01222332         9999999999975 89999999


Q ss_pred             CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          231 DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       231 ~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      +-|.+  -|.+++-.+++..+++++ ++.+.-|+.+|.
T Consensus       242 ~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  242 SCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             hhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence            99998  899999999999998886 888888887776

>KOG0264|consensus

Probab=99.09  E-value=4.4e-10  Score=110.39  Aligned_cols=177  Identities=11%  Similarity=0.083  Sum_probs=118.3

Q ss_pred             CcccCCCcEEEeecccccc-------cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682            1 MSGGDKGIVEVWRTFNLAL-------LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~-------l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      +||+.|++|.+|+++....       ...|.+|.+.|.+|+|.|--+-                                
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~--------------------------------  241 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED--------------------------------  241 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh--------------------------------
Confidence            5899999999999975322       3346777777777777663222                                


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCC--C-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcc-eeccCCCC
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYA--A-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVP-KRHLGDNF  147 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~--~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~-~~~l~~~~  147 (330)
                              ..+|.+.|+.+.||+....  . ...-.+|+    .+++|++|.|=.-  +|+++++++..++ +|.+..++
T Consensus       242 --------lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~----~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l  309 (422)
T KOG0264|consen  242 --------LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS----AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL  309 (422)
T ss_pred             --------hheeecCCCeEEEEEcCCCCCCCcccccccC----CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence                    2477788888999998642  1 22223666    4788999988555  7776677776666 56665544


Q ss_pred             ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccc--------------ccccccCCCCcEE-Ee--HHHHH
Q psy682          148 SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA--------------LQEGKFDHPNRLF-SS--ISLAW  207 (330)
Q Consensus       148 ~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~--------------l~~~l~gH~d~Vi-aS--t~~lW  207 (330)
                       -+++.|.   .++.+||.-..++|+++.|+.+.+ |++....              |+-.--||.+.|. .+  -..-|
T Consensus       310 -h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v-WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  310 -HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV-WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             -eeccCCCcceEEEEeCCCCCceeEecccCCcEEE-EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence             2355554   588899999999999999999999 9996422              2233446666551 11  11111


Q ss_pred             hh-hccCCCcEEEEccc
Q psy682          208 KN-CQRDTSDVKVHTTF  223 (330)
Q Consensus       208 ~~-SgS~Dgtvkl~~~~  223 (330)
                      .+ |.+.|+.+.||.-.
T Consensus       388 ~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEecCCceEEEeecc
Confidence            11 89999999999743

>KOG4283|consensus

Probab=99.08  E-value=6.7e-10  Score=104.96  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=127.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+|-.|-.|||.|++.|.--++|.||.+.|.+|.+||....                                       
T Consensus       162 A~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~---------------------------------------  202 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW---------------------------------------  202 (397)
T ss_pred             EEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee---------------------------------------
Confidence            46777889999999999999999999999999999997666                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCC--CcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEE
Q psy682           81 VVTVTANHQFAINRWNPDYA--ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  158 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~--~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~  158 (330)
                       |++|++.|++||+|+....  -.+.+-.|+.                           ...--+.  -.....+..+..
T Consensus       203 -vLatgsaDg~irlWDiRrasgcf~~lD~hn~---------------------------k~~p~~~--~n~ah~gkvngl  252 (397)
T KOG4283|consen  203 -VLATGSADGAIRLWDIRRASGCFRVLDQHNT---------------------------KRPPILK--TNTAHYGKVNGL  252 (397)
T ss_pred             -EEEecCCCceEEEEEeecccceeEEeecccC---------------------------ccCcccc--ccccccceeeee
Confidence             6899999999999998432  1122212210                           0000000  001122344677


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccc--------cccccCCCCcEEEe----HHHHHhhhccCCCcEEEEc-ccCc
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLAL--------QEGKFDHPNRLFSS----ISLAWKNCQRDTSDVKVHT-TFGD  225 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l--------~~~l~gH~d~ViaS----t~~lW~~SgS~Dgtvkl~~-~~G~  225 (330)
                      +++.||.+++.+| .|..+|+ |+.+.|+-        ++...-|....+.+    .+.+    -=.|+++-|.+ ..|.
T Consensus       253 a~tSd~~~l~~~g-td~r~r~-wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~----~p~~~~lall~~~sgs  326 (397)
T KOG4283|consen  253 AWTSDARYLASCG-TDDRIRV-WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVL----FPNDGSLALLNLLEGS  326 (397)
T ss_pred             eecccchhhhhcc-CccceEE-eecccCcccccccccccccccccceEEEeecccceEEE----EecCCeEEEEEccCce
Confidence            8999999988888 6999999 99987742        11111111111111    0000    01245666654 4899


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      .+|.|.+|-.  .|.+-+|-||=+...+++ ++++..|++
T Consensus       327 ~ir~l~~h~k--~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  327 FVRRLSTHLK--RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEeeecccc--eeeEEeecCchhhhhccccCCccccccc
Confidence            9999999955  899999999999888887 778888887

>KOG0641|consensus

Probab=99.08  E-value=4.7e-09  Score=96.35  Aligned_cols=215  Identities=13%  Similarity=0.124  Sum_probs=125.3

Q ss_pred             ecCCCceeEEEeCCCCCc-----------------------------Cc-ce-e--eeecCccEEEEEeCCCCCeeEeee
Q psy682           24 PSCDSSVRSLALSHDQKY-----------------------------SP-MM-F--STVLDDVCMSLKFPSNSPICHVTA   70 (330)
Q Consensus        24 ~gH~~~V~svafSpdg~~-----------------------------~~-l~-~--~~~~~d~~~~v~Fs~~~~v~~~~~   70 (330)
                      -..+..|++|+|.|.|.+                             .| .. +  ...|...++.+++||.|+++    
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli----  104 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI----  104 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE----
Confidence            456778999999999988                             01 10 1  22666778889999999975    


Q ss_pred             ccceeccCCcEEEEEcCCcceEEEeCCCCC--Cc----ccCCCCCCCCCCCCCCccccCCCc----eeccCCCCCCCcce
Q psy682           71 NTYVTLHMPSVVTVTANHQFAINRWNPDYA--AS----IQSPSYAETPGSPPGNLPLTLDPI----LTHPTSNNNAPVPK  140 (330)
Q Consensus        71 ~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--~~----~~~~~h~~~~~~~~~~l~fs~D~~----l~~~s~~~~~~~~~  140 (330)
                                   |+++.|++||.--.+..  ..    ..+.-|.+++++    +.|--||.    ++...+.++-++..
T Consensus       105 -------------atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtird----l~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen  105 -------------ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRD----LAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             -------------EecCCCceEEEEecccccccccCcceeeeecCCceee----eEEecCCCcCceEEEecCCCcceEEE
Confidence                         88888999987554322  11    112234444443    55544443    11101111111111


Q ss_pred             eccCCCCccceeeeee--EEEE---ecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE----EE-----e--
Q psy682          141 RHLGDNFSQKLRVRHN--CFVT---TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL----FS-----S--  202 (330)
Q Consensus       141 ~~l~~~~~~~~~~~~~--~~~~---spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V----ia-----S--  202 (330)
                      -.-+.  .|.++..+.  -...   +=.| .++++|+-|+|||. |++.-...++++-.  |..-+    ++     .  
T Consensus       168 tdc~~--g~~~~a~sghtghilalyswn~-~m~~sgsqdktirf-wdlrv~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  168 TDCGR--GQGFHALSGHTGHILALYSWNG-AMFASGSQDKTIRF-WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             eecCC--CCcceeecCCcccEEEEEEecC-cEEEccCCCceEEE-EeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence            11110  111111110  1111   1223 34778888888888 88754333333321  11111    11     1  


Q ss_pred             HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCce
Q psy682          203 ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~  268 (330)
                      ...+   ||-.|..|-|++. -|+.++.+-+|+.  .|++|.|||-...+.+++ +-.|.+=...|.+
T Consensus       244 rll~---sg~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  244 RLLA---SGHADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             ceee---eccCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecccceEEEeecccch
Confidence            2223   8899999999976 4689999999999  999999999999999997 5567666666643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=6.9e-09  Score=103.81  Aligned_cols=205  Identities=11%  Similarity=0.038  Sum_probs=117.2

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc-C--------c-ceeee----------ecCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-S--------P-MMFST----------VLDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-~--------~-l~~~~----------~~~d~~~~v~Fs~~~~v~   66 (330)
                      .+|.+||. +|...+.+..|...+.+.+|||||+. .        + +....          .........+|||||+.+
T Consensus       184 ~~l~i~D~-~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADS-DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECC-CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            47899998 46666778888889999999999986 0        0 11100          011112244566666544


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccC
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLG  144 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~  144 (330)
                      ++              +.+.+....|.+|+.+++...+...|..    ....+.|+||++ ++..+. ++...+....+.
T Consensus       263 ~~--------------~~s~~g~~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        263 AL--------------TLSRDGNPEIYVMDLGSRQLTRLTNHFG----IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             EE--------------EEeCCCCceEEEEECCCCCeEECccCCC----CccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            22              2333444568999998877766655532    345689999998 443221 111123333321


Q ss_pred             CCCcccee--ee-eeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEE
Q psy682          145 DNFSQKLR--VR-HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKV  219 (330)
Q Consensus       145 ~~~~~~~~--~~-~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl  219 (330)
                      +.-.+.+.  +. ....++||||++|+.+...++  .|.+ |++++|++. .+                           
T Consensus       325 ~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v-~d~~~g~~~-~L---------------------------  375 (433)
T PRK04922        325 GGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAV-MDLSTGSVR-TL---------------------------  375 (433)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEE-EECCCCCeE-EC---------------------------
Confidence            11111111  11 125679999999766543333  4666 777654433 11                           


Q ss_pred             EcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeecc
Q psy682          220 HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       220 ~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~~  273 (330)
                                 .. ..  .....+|||||+.|+..+    ...|..++.+|+....+.
T Consensus       376 -----------t~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        376 -----------TP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             -----------CC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence                       10 01  234568999999887763    345888888887655443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.07  E-value=4.4e-09  Score=96.22  Aligned_cols=213  Identities=20%  Similarity=0.262  Sum_probs=139.2

Q ss_pred             ccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            3 GGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         3 gs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      ++.|+++++|+... +.....+.+|...|.+++|+|+++.                                        
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------------------------  169 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL----------------------------------------  169 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCE----------------------------------------
Confidence            34589999999976 7888889999999999999998765                                        


Q ss_pred             EEEEcC-CcceEEEeCCCC-CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC-CCCcc-ceeeeee
Q psy682           82 VTVTAN-HQFAINRWNPDY-AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG-DNFSQ-KLRVRHN  156 (330)
Q Consensus        82 v~vS~~-~~~tv~lW~~~~-~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~-~~~~~-~~~~~~~  156 (330)
                       .++++ .+..+++|+... .......+|.    ..+..+.++|++. +.. +.+.+..+..|... +.... .+..+..
T Consensus       170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~  243 (466)
T COG2319         170 -LASGSSLDGTIKLWDLRTGKPLSTLAGHT----DPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSD  243 (466)
T ss_pred             -EEecCCCCCceEEEEcCCCceEEeeccCC----CceEEEEEcCCcceEEE-EecCCCcEEEEECCCCcEEeeecCCCCc
Confidence             24445 488999999975 3455555776    4677899999997 443 21222222233221 11111 2333332


Q ss_pred             E-E-EEecCCCeEEEeeccCCeEEEeeecccccc-cccccCCCCcEEE----e--HHHHHhhhccCCCcEEEEcc-cCce
Q psy682          157 C-F-VTTVDSRFLLACGFWDNSFREPFTTMYLAL-QEGKFDHPNRLFS----S--ISLAWKNCQRDTSDVKVHTT-FGDL  226 (330)
Q Consensus       157 ~-~-~~spDg~~i~asg~~D~tirl~w~~~~g~l-~~~l~gH~d~Via----S--t~~lW~~SgS~Dgtvkl~~~-~G~l  226 (330)
                      . + .|+|++++++ +++.|+++++ |+...... ...+.+|...|..    .  ...+   +++.|+++++|+. .+..
T Consensus       244 ~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         244 SVVSSFSPDGSLLA-SGSSDGTIRL-WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA---SGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             ceeEeECCCCCEEE-EecCCCcEEE-eeecCCCcEEEEEecCCccEEEEEECCCCCEEE---EeeCCCcEEEEEcCCCce
Confidence            2 2 6999997744 6778999999 99875443 4444788777721    1  2222   6788899999965 3555


Q ss_pred             eeecC--CCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCce
Q psy682          227 LRSLD--PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNR  268 (330)
Q Consensus       227 l~tL~--~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~  268 (330)
                      .....  .|..  .|..+.|++++..++.+  .++.+..|..+...
T Consensus       319 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         319 LSSLTLKGHEG--PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeeecccCC--ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            55555  7777  79999995453444443  45667668776665

>KOG2919|consensus

Probab=99.07  E-value=1.4e-09  Score=103.73  Aligned_cols=232  Identities=13%  Similarity=0.090  Sum_probs=154.4

Q ss_pred             CcccCCCcEEEeecccccccceeec--CCCc---eeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeecccee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPS--CDSS---VRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~g--H~~~---V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~   75 (330)
                      |+.+.|.-|+|||.-+|++...+.+  |.+.   -.+++|||||..                                  
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq----------------------------------  172 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ----------------------------------  172 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe----------------------------------
Confidence            4567889999999999999888754  3322   347778887777                                  


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC----cccCCCC-CCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCCCc
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA----SIQSPSY-AETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDNFS  148 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h-~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~~~  148 (330)
                              .-|+...+||+.+...+.    ..++..| ...-..+..+++|+| |++ ++..+++...++....-+.|+ 
T Consensus       173 --------lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-  243 (406)
T KOG2919|consen  173 --------LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-  243 (406)
T ss_pred             --------EeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-
Confidence                    334445556666652111    1111111 111123556788887 443 777788888887777755554 


Q ss_pred             cceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCC----cEE---Ee--HHHHHhhhccCCC
Q psy682          149 QKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPN----RLF---SS--ISLAWKNCQRDTS  215 (330)
Q Consensus       149 ~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d----~Vi---aS--t~~lW~~SgS~Dg  215 (330)
                      +.+-+|.   ..+.+.+||..+++++-.|..|-+ |++.. +.++-.|.+|.+    +|+   .+  .+.+   ||+.||
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~-WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La---sG~tdG  319 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC-WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA---SGDTDG  319 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeecccccCCCeEEE-EeehhccchhhhhhhhccCccceEEEecCCCCceee---ccCCCc
Confidence            4454554   355689999999998888998999 99864 446667777766    553   23  4444   999999


Q ss_pred             cEEEEccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee--CCceeeeccCccccccc
Q psy682          216 DVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM--NGNRLRHESHNDNLQEL  281 (330)
Q Consensus       216 tvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~--nG~~las~~~~~dVkEL  281 (330)
                      -|++|+.+  |.....+..|++  .|+.|++.|-=.++|+++-.++..+-.  ||.+..++....+.+|+
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~~el~~~ad~n~~  387 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPILATSSGQRIFKYPKDDNGELETELEEEADENEK  387 (406)
T ss_pred             cEEEEecCCCCCcccccccccc--cccceecCcccceeeeccCceeecCCCcccccccccccchhhhhhh
Confidence            99999874  787888888888  899999999988888876555544432  34444333333334443

>KOG1034|consensus

Probab=99.06  E-value=1.1e-09  Score=104.64  Aligned_cols=210  Identities=14%  Similarity=0.203  Sum_probs=129.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |.|+.-|.||+-|+..++....+.||...|+.+.|-|+--.                                       
T Consensus       109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q---------------------------------------  149 (385)
T KOG1034|consen  109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ---------------------------------------  149 (385)
T ss_pred             EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCc---------------------------------------
Confidence            45678899999999999999999999999999998886322                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC-Cccceeee
Q psy682           81 VVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQKLRVR  154 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~-~~~~~~~~  154 (330)
                       .++|++.|-+||+||.+...    ..+.-||.    +.+.++.|++|+. ++  |.|.+-.+..|.+..+ +...++-.
T Consensus       150 -lvls~SkD~svRlwnI~~~~Cv~VfGG~egHr----deVLSvD~~~~gd~i~--ScGmDhslk~W~l~~~~f~~~lE~s  222 (385)
T KOG1034|consen  150 -LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR----DEVLSVDFSLDGDRIA--SCGMDHSLKLWRLNVKEFKNKLELS  222 (385)
T ss_pred             -EEEEecCCceEEEEeccCCeEEEEeccccccc----CcEEEEEEcCCCCeee--ccCCcceEEEEecChhHHhhhhhhh
Confidence             24888899999999997665    22233564    4555677777777 44  3555555556665321 22222211


Q ss_pred             eeEEEEecC--------------------------------CCeEEEeeccCCeEEEeeecccccccccc----cCCCCc
Q psy682          155 HNCFVTTVD--------------------------------SRFLLACGFWDNSFREPFTTMYLALQEGK----FDHPNR  198 (330)
Q Consensus       155 ~~~~~~spD--------------------------------g~~i~asg~~D~tirl~w~~~~g~l~~~l----~gH~d~  198 (330)
                         +-++|+                                |.++++ =+-++.|-. |..  ||+.+.+    .+-...
T Consensus       223 ---~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilS-kscenaI~~-w~p--gkl~e~~~~vkp~es~~  295 (385)
T KOG1034|consen  223 ---ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILS-KSCENAIVC-WKP--GKLEESIHNVKPPESAT  295 (385)
T ss_pred             ---cccCCCCccCcCCccccccccccccccccchHHHHHHHhhheee-cccCceEEE-Eec--chhhhhhhccCCCccce
Confidence               112222                                233333 234566666 665  3433221    111111


Q ss_pred             -EEE----eHHHHHhh------------hccCCCcEEEEcccC---ceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCC
Q psy682          199 -LFS----SISLAWKN------------CQRDTSDVKVHTTFG---DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERG  257 (330)
Q Consensus       199 -Via----St~~lW~~------------SgS~Dgtvkl~~~~G---~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~  257 (330)
                       |+.    ....+|-+            .|..-|+|-+|+++-   ...-||..+.....|+..+||.||.+|+.- +++
T Consensus       296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence             110    12222322            888999999998632   234455555444689999999999999887 788


Q ss_pred             eEEEEe
Q psy682          258 HIAAFT  263 (330)
Q Consensus       258 ~~~~~s  263 (330)
                      ++.-|+
T Consensus       376 ~Vwrwd  381 (385)
T KOG1034|consen  376 TVWRWD  381 (385)
T ss_pred             cEEEEE
Confidence            887775

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=1.4e-08  Score=101.64  Aligned_cols=147  Identities=7%  Similarity=0.044  Sum_probs=83.9

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc-C--------c-cee----------eeecCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-S--------P-MMF----------STVLDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-~--------~-l~~----------~~~~~d~~~~v~Fs~~~~v~   66 (330)
                      ..|.+||. +|...+.+..|...+.+.+|||||+. .        + +..          .+.....+....|||||..+
T Consensus       182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            47888887 57777889999999999999999986 0        0 111          01122233444566666544


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccC
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLG  144 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~  144 (330)
                      ++              +.+.+....|.+|+.+++..+.+..+..    ......++|||+ ++..+. ++...+....+.
T Consensus       261 a~--------------~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~----~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        261 VM--------------SLSQGGNTDIYTMDLRSGTTTRLTDSPA----IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             EE--------------EEecCCCceEEEEECCCCceEEccCCCC----ccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence            22              2233334446777887777766655542    355689999998 543222 122223333332


Q ss_pred             CCCcccee---eeeeEEEEecCCCeEEEeec
Q psy682          145 DNFSQKLR---VRHNCFVTTVDSRFLLACGF  172 (330)
Q Consensus       145 ~~~~~~~~---~~~~~~~~spDg~~i~asg~  172 (330)
                      +.-.+.+.   ......++||||++|+.+..
T Consensus       323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             CCCeEEeecCCCcccCeEECCCCCEEEEEEc
Confidence            21112221   11234668999999776654

>KOG2445|consensus

Probab=99.04  E-value=2.3e-09  Score=101.70  Aligned_cols=213  Identities=14%  Similarity=0.207  Sum_probs=133.1

Q ss_pred             CcccCCCcEEEeeccccc----ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFNLA----LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~----~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      ||+|.|++|++|+..+..    .-..++.|.+.||.|++-+                      +.=||+           
T Consensus        29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh----------------------PEfGqv-----------   75 (361)
T KOG2445|consen   29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH----------------------PEFGQV-----------   75 (361)
T ss_pred             eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC----------------------ccccce-----------
Confidence            689999999999975433    2233688999999998866                      111554           


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCCCCC---------CCCCCCCCCccccCCCc---eeccCCCCCCCcceeccC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYA---------ETPGSPPGNLPLTLDPI---LTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~---------~~~~~~~~~l~fs~D~~---l~~~s~~~~~~~~~~~l~  144 (330)
                            .|+++.|+|+.+|-=+...   ..+|+         ...++.+..+.|.|--+   |+++++++.  ++.....
T Consensus        76 ------vA~cS~Drtv~iWEE~~~~---~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~--lRIYEA~  144 (361)
T KOG2445|consen   76 ------VATCSYDRTVSIWEEQEKS---EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI--LRIYEAP  144 (361)
T ss_pred             ------EEEEecCCceeeeeecccc---cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE--EEEEecC
Confidence                  5999999999999863111   11111         01123455677766544   555444442  2222222


Q ss_pred             CCCcc-------cee--------eee--eEEEEec--CCCeEEEeeccCC------eEEEeeeccc-c-c--ccccccCC
Q psy682          145 DNFSQ-------KLR--------VRH--NCFVTTV--DSRFLLACGFWDN------SFREPFTTMY-L-A--LQEGKFDH  195 (330)
Q Consensus       145 ~~~~~-------~~~--------~~~--~~~~~sp--Dg~~i~asg~~D~------tirl~w~~~~-g-~--l~~~l~gH  195 (330)
                      ++++-       .++        -+.  .|+.-+|  -.+-+||-|+ |.      .++| |.... | |  -+..|.||
T Consensus       145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~I-ye~~e~~rKw~kva~L~d~  222 (361)
T KOG2445|consen  145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKI-YEYNENGRKWLKVAELPDH  222 (361)
T ss_pred             CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEE-EEecCCcceeeeehhcCCC
Confidence            22210       011        111  2333332  1222466675 54      6777 87643 3 2  47788899


Q ss_pred             CCcE----EEe------HHHHHhhhccCCCcEEEEcccC---------------------ceeeecCCCCCCCCCcEEEe
Q psy682          196 PNRL----FSS------ISLAWKNCQRDTSDVKVHTTFG---------------------DLLRSLDPPSGFASPESVVM  244 (330)
Q Consensus       196 ~d~V----iaS------t~~lW~~SgS~Dgtvkl~~~~G---------------------~ll~tL~~h~~~~~v~~v~f  244 (330)
                      .|.|    +|+      -+++   .|+.|| |+||+..+                     +++..|.+|.+  .|+.+.+
T Consensus       223 ~dpI~di~wAPn~Gr~y~~lA---vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--~VWrv~w  296 (361)
T KOG2445|consen  223 TDPIRDISWAPNIGRSYHLLA---VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG--EVWRVRW  296 (361)
T ss_pred             CCcceeeeeccccCCceeeEE---EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC--ceEEEEE
Confidence            9999    333      2233   689999 99997543                     33556778888  9999999


Q ss_pred             CCCccEEEEc-cCCeEEEEeeC
Q psy682          245 SREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       245 S~dG~~l~s~-~~~~~~~~s~n  265 (330)
                      .--|.+|+|. +||.+++|-.|
T Consensus       297 NmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhh
Confidence            9999999997 58899999754

>KOG0307|consensus

Probab=99.04  E-value=3.8e-09  Score=113.16  Aligned_cols=221  Identities=14%  Similarity=0.123  Sum_probs=150.8

Q ss_pred             CcccCCCcEEEeeccc------ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682            1 MSGGDKGIVEVWRTFN------LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~------g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      |.|.+||.|-||+.+.      -..+.++.-|.+.|+.+.|+|.+.-                                 
T Consensus        84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n---------------------------------  130 (1049)
T KOG0307|consen   84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN---------------------------------  130 (1049)
T ss_pred             eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc---------------------------------
Confidence            4578999999999764      2478889999999999999996553                                 


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCC---Ccc
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDN---FSQ  149 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~---~~~  149 (330)
                             ++||++.++.|.+|+++..+.-..+|.. ...+.+.+|+--.--+  ++++++++...+|..+...+   +..
T Consensus       131 -------lLASGa~~geI~iWDlnn~~tP~~~~~~-~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~  202 (1049)
T KOG0307|consen  131 -------LLASGADDGEILIWDLNKPETPFTPGSQ-APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD  202 (1049)
T ss_pred             -------eeeccCCCCcEEEeccCCcCCCCCCCCC-CCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence                   4699999999999999875544444421 1234455555543333  44433333333332222211   111


Q ss_pred             ce-eeeeeEEEEecCCCeEEEeeccCC---eEEEeeecccc-cccccccCCCCcEEE-e------HHHHHhhhccCCCcE
Q psy682          150 KL-RVRHNCFVTTVDSRFLLACGFWDN---SFREPFTTMYL-ALQEGKFDHPNRLFS-S------ISLAWKNCQRDTSDV  217 (330)
Q Consensus       150 ~~-~~~~~~~~~spDg~~i~asg~~D~---tirl~w~~~~g-~l~~~l~gH~d~Via-S------t~~lW~~SgS~Dgtv  217 (330)
                      .. +.+...++..||.-.-+..++-|.   .|++ |++..- ..++++.+|..-|++ +      ...|   |..+|+.|
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql-WDlR~assP~k~~~~H~~GilslsWc~~D~~lll---SsgkD~~i  278 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL-WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL---SSGKDNRI  278 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEe-ecccccCCchhhhcccccceeeeccCCCCchhhh---cccCCCCe
Confidence            11 133457888998766444444444   4899 997543 478899999999864 1      6666   99999999


Q ss_pred             EEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEE-EEcc-CCeEEEEeeCCce
Q psy682          218 KVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV-VNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       218 kl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~~-~~~~~~~s~nG~~  268 (330)
                      .+|+. +|+.|..|-.-.+  ++..|.|.|.---+ +.++ +|.+-.|++-|.-
T Consensus       279 i~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99975 7999999987555  89999999986633 3334 9999999877653

>KOG0650|consensus

Probab=99.03  E-value=2.3e-09  Score=108.71  Aligned_cols=246  Identities=17%  Similarity=0.165  Sum_probs=144.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||++||+||+|.+.+|..+++++- .+.|.+|||+|.+....+....+..-.+.--.|..  ++       ......+-
T Consensus       416 asGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~--~~-------e~~~t~el  485 (733)
T KOG0650|consen  416 ASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD--RL-------EVGPTKEL  485 (733)
T ss_pred             eecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccc--hh-------hhcchhhh
Confidence            6899999999999999999999864 44899999999877622211111110000001110  00       00001111


Q ss_pred             EEEE--EcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccCCCcee-ccC-CCCCCCcceeccCCCCc---
Q psy682           81 VVTV--TANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTLDPILT-HPT-SNNNAPVPKRHLGDNFS---  148 (330)
Q Consensus        81 ~v~v--S~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~D~~l~-~~s-~~~~~~~~~~~l~~~~~---  148 (330)
                      ...+  -+..+.+|-.|+.....     +.....|-    .++..++-.-+|.+. +.. .+++..+..-+|.....   
T Consensus       486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~----k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~P  561 (733)
T KOG0650|consen  486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP----KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSP  561 (733)
T ss_pred             hhcCCCccCCcccceeechhhhhhhccceEEEEecC----CccceeeeecCCceEEEeccCCCcceEEEEecccccccCc
Confidence            1111  02335567888875211     12233554    356668888888844 322 23333344444433222   


Q ss_pred             -cceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc----------cCCC--CcEEEe---HHHHH-----
Q psy682          149 -QKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK----------FDHP--NRLFSS---ISLAW-----  207 (330)
Q Consensus       149 -~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l----------~gH~--d~ViaS---t~~lW-----  207 (330)
                       +...+...++.|.|-..++++|.  .+.+|+ +++...++.+.+          .-|.  |-+|++   .-++|     
T Consensus       562 F~kskG~vq~v~FHPs~p~lfVaT--q~~vRi-YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  562 FRKSKGLVQRVKFHPSKPYLFVAT--QRSVRI-YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             hhhcCCceeEEEecCCCceEEEEe--ccceEE-EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence             23445567889999988888774  789999 998766544433          3343  333221   11112     


Q ss_pred             -----hh---------------------hccCCCcEEE-E-cccCce--------eeecCCCCCC--CCCcEEEeCCCcc
Q psy682          208 -----KN---------------------CQRDTSDVKV-H-TTFGDL--------LRSLDPPSGF--ASPESVVMSREGV  249 (330)
Q Consensus       208 -----~~---------------------SgS~Dgtvkl-~-~~~G~l--------l~tL~~h~~~--~~v~~v~fS~dG~  249 (330)
                           ..                     |||.|||+.+ | .+.-+|        |+.|+||.-.  ..|-.+.|.|.--
T Consensus       639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp  718 (733)
T KOG0650|consen  639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP  718 (733)
T ss_pred             CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence                 11                     9999999999 4 333444        5788898662  3488889999999


Q ss_pred             EEEEcc-CCeEEEEe
Q psy682          250 IVVNYE-RGHIAAFT  263 (330)
Q Consensus       250 ~l~s~~-~~~~~~~s  263 (330)
                      .|.+++ ++++.+|+
T Consensus       719 WLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  719 WLFSAGADGTIRLFT  733 (733)
T ss_pred             eEEecCCCceEEeeC
Confidence            999986 77999986

>KOG1538|consensus

Probab=99.03  E-value=1.4e-09  Score=111.40  Aligned_cols=206  Identities=16%  Similarity=0.120  Sum_probs=143.7

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTV   84 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~v   84 (330)
                      .+..+-++|.++|.++.+|+||.+.|..||+|.||+.                                         .|
T Consensus        31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkr-----------------------------------------FA   69 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKR-----------------------------------------FA   69 (1081)
T ss_pred             cCCEEEEEeCCCcccccccccccceEEEEEEccCCce-----------------------------------------ec
Confidence            3556899999999999999999999999999999999                                         39


Q ss_pred             EcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeeeeEEEEec
Q psy682           85 TANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV  162 (330)
Q Consensus        85 S~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~sp  162 (330)
                      |++.|+.|-+|+.+-.. ++.  +|+    +...+.+|-|=.. +++ .+=++-+.|.-....---++...+..+-+.+.
T Consensus        70 SG~aDK~VI~W~~klEG~LkY--SH~----D~IQCMsFNP~~h~Las-CsLsdFglWS~~qK~V~K~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   70 SGSADKSVIIWTSKLEGILKY--SHN----DAIQCMSFNPITHQLAS-CSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN  142 (1081)
T ss_pred             cCCCceeEEEecccccceeee--ccC----CeeeEeecCchHHHhhh-cchhhccccChhhhhHHhhhhheeEEEeeecC
Confidence            99999999999985332 222  565    5677899988877 554 33333444421111111122333445667899


Q ss_pred             CCCeEEEeeccCCeEEEeeecccccc---cccccCCCCcEE--E----e--------HHHHHhh----------------
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLAL---QEGKFDHPNRLF--S----S--------ISLAWKN----------------  209 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~l---~~~l~gH~d~Vi--a----S--------t~~lW~~----------------  209 (330)
                      ||+| ++-|..|+||.+ =+- +|+.   ++.--|....|+  .    |        -+.-|.-                
T Consensus       143 DGqy-lalG~~nGTIsi-RNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r  219 (1081)
T KOG1538|consen  143 DGQY-LALGMFNGTISI-RNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR  219 (1081)
T ss_pred             CCcE-EEEeccCceEEe-ecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc
Confidence            9999 666778999987 443 3432   222222333341  0    0        1111321                


Q ss_pred             -------------------hccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEe
Q psy682          210 -------------------CQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT  263 (330)
Q Consensus       210 -------------------SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s  263 (330)
                                         -|+.||-.+++|++|-+|.|+-.-..  +++.|+.-|+||.++-| -||++.-|.
T Consensus       220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             cCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence                               57889999999999999999987544  99999999999999998 488877665

>KOG0639|consensus

Probab=99.03  E-value=1.7e-09  Score=107.89  Aligned_cols=218  Identities=13%  Similarity=0.144  Sum_probs=137.3

Q ss_pred             CCceeEEEeCCCCCcCcc------eee-eecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC
Q psy682           27 DSSVRSLALSHDQKYSPM------MFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY   99 (330)
Q Consensus        27 ~~~V~svafSpdg~~~~l------~~~-~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~   99 (330)
                      .++-+=++|=||...-+-      +.. -.|.+.|-.+.+|..-+.|                 -| ++-+.||+|+..+
T Consensus       388 dg~~qPvpfP~dal~g~gIPrharq~~tL~HGEvVcAvtIS~~trhV-----------------yT-gGkgcVKVWdis~  449 (705)
T KOG0639|consen  388 DGQMQPVPFPPDALVGPGIPRHARQINTLAHGEVVCAVTISNPTRHV-----------------YT-GGKGCVKVWDISQ  449 (705)
T ss_pred             CCcccCCCCCchhhcCCCCCchHHhhhhhccCcEEEEEEecCCccee-----------------Ee-cCCCeEEEeeccC
Confidence            345556677777665110      111 1566666667766665553                 33 4456799999976


Q ss_pred             CCcccCCCCCCCCC--CCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---------eEEEEecCCCeE
Q psy682          100 AASIQSPSYAETPG--SPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---------NCFVTTVDSRFL  167 (330)
Q Consensus       100 ~~~~~~~~h~~~~~--~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~spDg~~i  167 (330)
                      ..-+....|-+-.+  +-..+.-+.+||. |.+  +|....+..|.|..+-   .++..         ..+++|||.+..
T Consensus       450 pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv--GGeastlsiWDLAapT---prikaeltssapaCyALa~spDakvc  524 (705)
T KOG0639|consen  450 PGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV--GGEASTLSIWDLAAPT---PRIKAELTSSAPACYALAISPDAKVC  524 (705)
T ss_pred             CCCCCccccccccCcccceeeeEecCCCceEEe--ccccceeeeeeccCCC---cchhhhcCCcchhhhhhhcCCcccee
Confidence            64333323322110  1122456789999 554  5556667778875542   22221         246689999998


Q ss_pred             EEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee--HHHHHhhhccCCCcEEEEcc-cCceee-------------
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS--ISLAWKNCQRDTSDVKVHTT-FGDLLR-------------  228 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~-------------  228 (330)
                      ++|- .|+.|+| |++..-.+++.+.||.|-+  | .|  --+||  +|.-|.|||-|+. +|+-+.             
T Consensus       525 Fscc-sdGnI~v-wDLhnq~~VrqfqGhtDGascIdis~dGtklW--TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~  600 (705)
T KOG0639|consen  525 FSCC-SDGNIAV-WDLHNQTLVRQFQGHTDGASCIDISKDGTKLW--TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY  600 (705)
T ss_pred             eeec-cCCcEEE-EEcccceeeecccCCCCCceeEEecCCCceee--cCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence            8887 6999999 9998888999999999987  2 34  55788  6999999999974 443321             


Q ss_pred             ---------------------------ecCCCCCCCCCcEEEeCCCccEEEEccCC-eEEEE-eeCCceeeecc
Q psy682          229 ---------------------------SLDPPSGFASPESVVMSREGVIVVNYERG-HIAAF-TMNGNRLRHES  273 (330)
Q Consensus       229 ---------------------------tL~~h~~~~~v~~v~fS~dG~~l~s~~~~-~~~~~-s~nG~~las~~  273 (330)
                                                 -|.-|+.  -|-++.|++-|+..||.+++ .|-.| ++=|..+-..+
T Consensus       601 cP~~dWlavGMens~vevlh~skp~kyqlhlheS--cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCccceeeccccc--EEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence                                       1112333  57788888888888887644 34455 45555444333

>KOG1274|consensus

Probab=99.01  E-value=4.7e-09  Score=110.45  Aligned_cols=122  Identities=11%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-cCc
Q psy682          153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-FGD  225 (330)
Q Consensus       153 ~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~  225 (330)
                      ....+++|+.+|++ ++.|+.|-.||+ -+.+++.-+..+.||...|.    .+  .+.+   +.+-||+|++|+. +|.
T Consensus        97 lp~r~~~v~g~g~~-iaagsdD~~vK~-~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA---vss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKM-IAAGSDDTAVKL-LNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA---VSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             ccceEEEEecCCcE-EEeecCceeEEE-EeccccchheeecccCCceeeeeEcCCCCEEE---EEecCceEEEEEcccch
Confidence            33467889999999 666778999999 99988889999999999993    22  3333   6788999999976 688


Q ss_pred             eeeecCCCCCC------CCCcEEEeCCC-ccEEEEccCCe-------------------------EEEEeeCCceeeecc
Q psy682          226 LLRSLDPPSGF------ASPESVVMSRE-GVIVVNYERGH-------------------------IAAFTMNGNRLRHES  273 (330)
Q Consensus       226 ll~tL~~h~~~------~~v~~v~fS~d-G~~l~s~~~~~-------------------------~~~~s~nG~~las~~  273 (330)
                      +..+|.+-..+      ..+..++|+|+ |+++|-+.++.                         ...|+|||+.||.-.
T Consensus       172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence            88888873221      25678899999 66666553332                         678999999999887


Q ss_pred             Cccccc
Q psy682          274 HNDNLQ  279 (330)
Q Consensus       274 ~~~dVk  279 (330)
                      .++.|.
T Consensus       252 ~~g~I~  257 (933)
T KOG1274|consen  252 LDGQIL  257 (933)
T ss_pred             cCCcEE
Confidence            776543

>KOG0303|consensus

Probab=99.00  E-value=1e-08  Score=100.02  Aligned_cols=205  Identities=15%  Similarity=0.149  Sum_probs=128.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ||||+|-+|++|++..+.+...+.                 .|...+.||+..|-.|.++|-.+=               
T Consensus        98 ASgSeD~~v~vW~IPe~~l~~~lt-----------------epvv~L~gH~rrVg~V~wHPtA~N---------------  145 (472)
T KOG0303|consen   98 ASGSEDTKVMVWQIPENGLTRDLT-----------------EPVVELYGHQRRVGLVQWHPTAPN---------------  145 (472)
T ss_pred             ecCCCCceEEEEECCCcccccCcc-----------------cceEEEeecceeEEEEeecccchh---------------
Confidence            799999999999998765544432                 334445555555555555554442               


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                       |+.|++.|.+|.+||...++..-                                     .+. +.+     -..++.|
T Consensus       146 -VLlsag~Dn~v~iWnv~tgeali-------------------------------------~l~-hpd-----~i~S~sf  181 (472)
T KOG0303|consen  146 -VLLSAGSDNTVSIWNVGTGEALI-------------------------------------TLD-HPD-----MVYSMSF  181 (472)
T ss_pred             -hHhhccCCceEEEEeccCCceee-------------------------------------ecC-CCC-----eEEEEEe
Confidence             57999999999999996553111                                     111 111     1245568


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc----E-E------EeHHHHHhhhccCCCcEEEEcc----cCc
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR----L-F------SSISLAWKNCQRDTSDVKVHTT----FGD  225 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~----V-i------aSt~~lW~~SgS~Dgtvkl~~~----~G~  225 (330)
                      +-||.+ +++...|+.||+ |+..+|+++....+|...    + +      ++|= .   |...|+.+-||+.    +.-
T Consensus       182 n~dGs~-l~TtckDKkvRv-~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG-f---sr~seRq~aLwdp~nl~eP~  255 (472)
T KOG0303|consen  182 NRDGSL-LCTTCKDKKVRV-IDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG-F---SRMSERQIALWDPNNLEEPI  255 (472)
T ss_pred             ccCCce-eeeecccceeEE-EcCCCCcEeeecccccCCCcceeEEeccCceeeec-c---ccccccceeccCcccccCcc
Confidence            999998 566669999999 999999998888788763    2 2      2221 1   5667888888864    344


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccc
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKT  303 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~  303 (330)
                      -+.+|..-++   |--=-+-||-.+|.-.  +|++|+-|-++              .=-|-+.|+-+|-.+....-+|..
T Consensus       256 ~~~elDtSnG---vl~PFyD~dt~ivYl~GKGD~~IRYyEit--------------~d~P~~hyln~f~S~epQRG~g~m  318 (472)
T KOG0303|consen  256 ALQELDTSNG---VLLPFYDPDTSIVYLCGKGDSSIRYFEIT--------------NEPPFVHYLNTFSSKEPQRGMGFM  318 (472)
T ss_pred             eeEEeccCCc---eEEeeecCCCCEEEEEecCCcceEEEEec--------------CCCceeEEecccccCCcccccccc
Confidence            4556655433   2222334554444333  46666655422              112557788888777777666655


Q ss_pred             c
Q psy682          304 E  304 (330)
Q Consensus       304 ~  304 (330)
                      .
T Consensus       319 P  319 (472)
T KOG0303|consen  319 P  319 (472)
T ss_pred             c
Confidence            4

>KOG0270|consensus

Probab=99.00  E-value=2.6e-09  Score=105.02  Aligned_cols=140  Identities=11%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEe
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT  161 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s  161 (330)
                      |+||++.|.||++|+.+.+...++..|.                                  ++        ..+++.+.
T Consensus       258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~----------------------------------~k--------~Vq~l~wh  295 (463)
T KOG0270|consen  258 VLASGSADKTVKLWDVDTGKPKSSITHH----------------------------------GK--------KVQTLEWH  295 (463)
T ss_pred             eEEecCCCceEEEEEcCCCCcceehhhc----------------------------------CC--------ceeEEEec
Confidence            5799999999999999766433322211                                  11        12455566


Q ss_pred             cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe--HHHHHhh-------hccCCCcEEEEcc--cCceee
Q psy682          162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS--ISLAWKN-------CQRDTSDVKVHTT--FGDLLR  228 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS--t~~lW~~-------SgS~Dgtvkl~~~--~G~ll~  228 (330)
                      |....++-+|+.|+++++ .+...       .++...-  +-+  -..+|+-       ++..||+|+=.+.  .|+.+.
T Consensus       296 ~~~p~~LLsGs~D~~V~l-~D~R~-------~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw  367 (463)
T KOG0270|consen  296 PYEPSVLLSGSYDGTVAL-KDCRD-------PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW  367 (463)
T ss_pred             CCCceEEEeccccceEEe-eeccC-------ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence            654444666778999988 66531       1111111  000  0111221       7899999998865  589999


Q ss_pred             ecCCCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeCCceeeecc
Q psy682          229 SLDPPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~nG~~las~~  273 (330)
                      +++.|.+  +|.+|++++.-. ++++++ ++.+.+|..++..=....
T Consensus       368 t~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~  412 (463)
T KOG0270|consen  368 TLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK  412 (463)
T ss_pred             EEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence            9999999  999999998744 566664 888999998876444443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=9.5e-09  Score=102.98  Aligned_cols=215  Identities=10%  Similarity=0.001  Sum_probs=121.2

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc-C--------c-ceeee---e-------cCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-S--------P-MMFST---V-------LDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-~--------~-l~~~~---~-------~~d~~~~v~Fs~~~~v~   66 (330)
                      ..|.+||.. |...+.+..+...+.+.+|||||+. .        + +....   +       ....+....|||||..|
T Consensus       179 ~~l~~~d~d-g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCC-CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            368888884 5556667778889999999999987 0        0 11100   0       01112234566666654


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCC-CCCCcceeccC
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-NNAPVPKRHLG  144 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~-~~~~~~~~~l~  144 (330)
                      ++.              .+.+....|.+|+.+++...++..+.    .......|+|||+ ++..+.. +...++...+.
T Consensus       258 a~~--------------~~~~g~~~I~~~d~~tg~~~~lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~  319 (429)
T PRK03629        258 AFA--------------LSKTGSLNLYVMDLASGQIRQVTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN  319 (429)
T ss_pred             EEE--------------EcCCCCcEEEEEECCCCCEEEccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence            222              12233345888898877766665442    2456789999999 5432221 11223333332


Q ss_pred             CCCccceeee---eeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCC--cEEEe--HHHHHhhhccCCC
Q psy682          145 DNFSQKLRVR---HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPN--RLFSS--ISLAWKNCQRDTS  215 (330)
Q Consensus       145 ~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d--~ViaS--t~~lW~~SgS~Dg  215 (330)
                      +.-.+.+...   ..+.++||||++|+.++..++  .|.+ |++++|+.......+.+  ..++.  ...+   .++.|+
T Consensus       320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~-~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~---~~s~~~  395 (429)
T PRK03629        320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK-QDLATGGVQVLTDTFLDETPSIAPNGTMVI---YSSSQG  395 (429)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEE-EECCCCCeEEeCCCCCCCCceECCCCCEEE---EEEcCC
Confidence            2111122111   135779999999777665443  3667 88877764322222211  12322  1122   333444


Q ss_pred             c---EEEEcccCceeeecCCCCCCCCCcEEEeCC
Q psy682          216 D---VKVHTTFGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       216 t---vkl~~~~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                      .   +.+++.+|+..+.|.+|.+  .+...++||
T Consensus       396 ~~~~l~~~~~~G~~~~~l~~~~~--~~~~p~Wsp  427 (429)
T PRK03629        396 MGSVLNLVSTDGRFKARLPATDG--QVKFPAWSP  427 (429)
T ss_pred             CceEEEEEECCCCCeEECccCCC--CcCCcccCC
Confidence            3   3446778999999999887  788888887

>KOG0647|consensus

Probab=98.98  E-value=2.5e-09  Score=101.17  Aligned_cols=225  Identities=11%  Similarity=0.097  Sum_probs=133.5

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-CcccC--CCCCCCCCCCCCCccccCCC
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-ASIQS--PSYAETPGSPPGNLPLTLDP  125 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~~~~~--~~h~~~~~~~~~~l~fs~D~  125 (330)
                      -.+|.|-.++|||....                ..+.++.|++|++|..+.. .....  ..|.    .++.++.++-||
T Consensus        25 pP~DsIS~l~FSP~~~~----------------~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~----~PvL~v~Wsddg   84 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADN----------------LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD----GPVLDVCWSDDG   84 (347)
T ss_pred             CcccchheeEeccccCc----------------eEEecccCCceEEEEEecCCcccchhhhccC----CCeEEEEEccCC
Confidence            45677777788874333                2578899999999999764 22222  2554    477889999999


Q ss_pred             c-eeccCCCCCCCcceeccCCCCccceeeee---e-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-
Q psy682          126 I-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---N-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-  199 (330)
Q Consensus       126 ~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-  199 (330)
                      . ..+++.+...++|...-+.  .+.+..|.   . |--+.+-...++++||||+|||. |++..-+++.++. -.++| 
T Consensus        85 skVf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf-WD~R~~~pv~t~~-LPeRvY  160 (347)
T KOG0647|consen   85 SKVFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF-WDTRSSNPVATLQ-LPERVY  160 (347)
T ss_pred             ceEEeeccCCceEEEEccCCC--eeeeeecccceeEEEEecCCCcceeEecccccceee-cccCCCCeeeeee-ccceee
Confidence            8 4543444444444333222  23344443   1 32345555557999999999999 9997666554442 23333 


Q ss_pred             ----------EEe---HHHHHhh-------------------------------hccCCCcEEEEcc-cC--ceeeecCC
Q psy682          200 ----------FSS---ISLAWKN-------------------------------CQRDTSDVKVHTT-FG--DLLRSLDP  232 (330)
Q Consensus       200 ----------iaS---t~~lW~~-------------------------------SgS~Dgtvkl~~~-~G--~ll~tL~~  232 (330)
                                ++.   -++++++                               =||..|-|-|+.. .+  +---+|+-
T Consensus       161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC  240 (347)
T KOG0647|consen  161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC  240 (347)
T ss_pred             ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence                      111   1111111                               5777888888644 33  33345555


Q ss_pred             CCC-------CCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCce--eeeccCccccccccccccchhhhhcccCCCc
Q psy682          233 PSG-------FASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR--LRHESHNDNLQELIPELFFLPEMLVNSNGYC  299 (330)
Q Consensus       233 h~~-------~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~--las~~~~~dVkELipef~~~p~~l~n~~~~~  299 (330)
                      |..       .-.|++|+|.|.=.++|++ +||+...|..|-|.  ..+..+...+.+.  .|-....+|...-++|
T Consensus       241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc--~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC--SFNRNGSIFAYALGYD  315 (347)
T ss_pred             eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--EecCCCCEEEEEeecc
Confidence            542       0168999999997777776 79999999877653  2334444444443  3333334444333333

>KOG0268|consensus

Probab=98.97  E-value=4.9e-09  Score=101.28  Aligned_cols=224  Identities=9%  Similarity=0.082  Sum_probs=138.9

Q ss_pred             cccceeecCCCceeEEEeCCC-----------CCc--------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682           18 ALLYAFPSCDSSVRSLALSHD-----------QKY--------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpd-----------g~~--------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      ..+..|.||.+.|.++|=.|.           |+.        .....+..|+..|..+.+.-                 
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----------------  119 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----------------  119 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----------------
Confidence            345567999999999999884           222        11122333444443333333                 


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC---CCceeccCCCCCCCcceeccCCCCccceeee-
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL---DPILTHPTSNNNAPVPKRHLGDNFSQKLRVR-  154 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~---D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~-  154 (330)
                        -..+|++.|+|||+|-.++....+..|-+.       .+.+..   +...+  +.|....+|.-+...|. +++.-. 
T Consensus       120 --~~~~tvgdDKtvK~wk~~~~p~~tilg~s~-------~~gIdh~~~~~~Fa--TcGe~i~IWD~~R~~Pv-~smswG~  187 (433)
T KOG0268|consen  120 --TSFFTVGDDKTVKQWKIDGPPLHTILGKSV-------YLGIDHHRKNSVFA--TCGEQIDIWDEQRDNPV-SSMSWGA  187 (433)
T ss_pred             --cceEEecCCcceeeeeccCCcceeeecccc-------cccccccccccccc--ccCceeeecccccCCcc-ceeecCC
Confidence              234888899999999998876666544331       111111   11223  23333334433322333 222222 


Q ss_pred             --eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe--HHHHHhh------hccCCCcEEEEccc-
Q psy682          155 --HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS--ISLAWKN------CQRDTSDVKVHTTF-  223 (330)
Q Consensus       155 --~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS--t~~lW~~------SgS~Dgtvkl~~~~-  223 (330)
                        -.|+.|+|--..||+|+..|++|-| +++.++++++.+      |+-.  --+-|+-      +|+.|-.+-.++.. 
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvL-yD~R~~~Pl~KV------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVL-YDLRQASPLKKV------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEE-EecccCCcccee------eeeccccceecCccccceeeccccccceehhhhh
Confidence              1578899988888888888999999 999888765432      2211  2223544      88888777666542 


Q ss_pred             -CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe------------------------EEEEeeCCceeeeccCccc
Q psy682          224 -GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGH------------------------IAAFTMNGNRLRHESHNDN  277 (330)
Q Consensus       224 -G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~------------------------~~~~s~nG~~las~~~~~d  277 (330)
                       -+.+....+|-.  .|.+|.|||-|+-+|||| |.+                        .+.||.|.+.+-|-+++.+
T Consensus       261 l~~p~~v~~dhvs--AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n  338 (433)
T KOG0268|consen  261 LSRPLNVHKDHVS--AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN  338 (433)
T ss_pred             hcccchhhcccce--eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence             455666677777  999999999999999997 554                        4666666666666666655


Q ss_pred             cc
Q psy682          278 LQ  279 (330)
Q Consensus       278 Vk  279 (330)
                      |+
T Consensus       339 vR  340 (433)
T KOG0268|consen  339 VR  340 (433)
T ss_pred             ee
Confidence            54

>KOG1274|consensus

Probab=98.96  E-value=7.3e-09  Score=109.07  Aligned_cols=179  Identities=16%  Similarity=0.109  Sum_probs=130.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ++|+.+++|.++...+|+.-..|.--.-.++.++|+-+|++                                       
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~---------------------------------------  110 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKM---------------------------------------  110 (933)
T ss_pred             EEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcE---------------------------------------
Confidence            46889999999998887766666666677888888888877                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCC-CcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEE
Q psy682           81 VVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  159 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~  159 (330)
                        +|.++.|.+||+=+.+.. ..+.+.||.                                           +-..++.
T Consensus       111 --iaagsdD~~vK~~~~~D~s~~~~lrgh~-------------------------------------------apVl~l~  145 (933)
T KOG1274|consen  111 --IAAGSDDTAVKLLNLDDSSQEKVLRGHD-------------------------------------------APVLQLS  145 (933)
T ss_pred             --EEeecCceeEEEEeccccchheeecccC-------------------------------------------Cceeeee
Confidence              588899999999887432 111111221                                           1235777


Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee--HHHHHhh------hccCCCcEEEEccc-Ccee
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS--ISLAWKN------CQRDTSDVKVHTTF-GDLL  227 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS--t~~lW~~------SgS~Dgtvkl~~~~-G~ll  227 (330)
                      +.|.+++ +|+.+-|+++++ |+++++.+..++.+-.-.-  + ++  +...|+-      -.+.|++||++.+. +.++
T Consensus       146 ~~p~~~f-LAvss~dG~v~i-w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  146 YDPKGNF-LAVSSCDGKVQI-WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             EcCCCCE-EEEEecCceEEE-EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            9999998 555668999999 9999999888776643322  2 22  4445655      35679999999875 4666


Q ss_pred             eecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          228 RSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      ..|++-.....+..++|||.|+.||+++ ++.|.+|..+
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            7777633322588999999999999997 8888888877

>KOG0303|consensus

Probab=98.95  E-value=3.9e-09  Score=102.79  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee---eEE
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCF  158 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~  158 (330)
                      ++||++.|-+|++|...-+.+..                                     .+.+|. -.+.+|+   ..+
T Consensus        96 vIASgSeD~~v~vW~IPe~~l~~-------------------------------------~ltepv-v~L~gH~rrVg~V  137 (472)
T KOG0303|consen   96 VIASGSEDTKVMVWQIPENGLTR-------------------------------------DLTEPV-VELYGHQRRVGLV  137 (472)
T ss_pred             eeecCCCCceEEEEECCCccccc-------------------------------------Ccccce-EEEeecceeEEEE
Confidence            35999999999999984332111                                     111111 1234444   245


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-e-----HHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-S-----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLD  231 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-S-----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~  231 (330)
                      +..|-..-++.+++.|++|++ |++.+|+-+-++. |.|.|.+ |     ....   ++++|+.|+||+. +|+++..-.
T Consensus       138 ~wHPtA~NVLlsag~Dn~v~i-Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~---TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  138 QWHPTAPNVLLSAGSDNTVSI-WNVGTGEALITLD-HPDMVYSMSFNRDGSLLC---TTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             eecccchhhHhhccCCceEEE-EeccCCceeeecC-CCCeEEEEEeccCCceee---eecccceeEEEcCCCCcEeeecc
Confidence            556655554555567999999 9999999766665 9998832 1     2333   7889999999974 899999999


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEc----cCCeEEEEeeC
Q psy682          232 PPSGFASPESVVMSREGVIVVNY----ERGHIAAFTMN  265 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~----~~~~~~~~s~n  265 (330)
                      +|.+ ....-+.|-.+|.++-+|    ++..+.+|.++
T Consensus       213 ~heG-~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  213 AHEG-AKPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             cccC-CCcceeEEeccCceeeeccccccccceeccCcc
Confidence            9999 477888899999977666    46667777655

>KOG0322|consensus

Probab=98.92  E-value=1.1e-08  Score=95.59  Aligned_cols=214  Identities=15%  Similarity=0.136  Sum_probs=133.9

Q ss_pred             cccCCCcEEEeecccccccceee-cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +|+.-|.|++|.+++.+.+..+. .|...|..+-.-|+++.                                       
T Consensus        30 sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l---------------------------------------   70 (323)
T KOG0322|consen   30 SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSL---------------------------------------   70 (323)
T ss_pred             cccccceEEEEEeecCccchhhhhhccceeeceeecCCcch---------------------------------------
Confidence            67888999999999888888887 66666666655554443                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCC-CccccCCCcee-----ccCCCCCCCcc--------eeccCCC
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPG-NLPLTLDPILT-----HPTSNNNAPVP--------KRHLGDN  146 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~-~l~fs~D~~l~-----~~s~~~~~~~~--------~~~l~~~  146 (330)
                         ++-++|..+-+|...+..-..  -|+=.+++-.+ .+++.+.++..     ..+-+.+. +.        +.+..++
T Consensus        71 ---~tqgRd~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   71 ---DTQGRDPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADD  144 (323)
T ss_pred             ---hhcCCCceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCc
Confidence               777888888888887743211  12211111111 13334444311     00000000 00        0111111


Q ss_pred             CccceeeeeeEEE--EecCCCeEEEeeccCCeEEEeeecccc----------cccccccCCCCcEE----Ee--------
Q psy682          147 FSQKLRVRHNCFV--TTVDSRFLLACGFWDNSFREPFTTMYL----------ALQEGKFDHPNRLF----SS--------  202 (330)
Q Consensus       147 ~~~~~~~~~~~~~--~spDg~~i~asg~~D~tirl~w~~~~g----------~l~~~l~gH~d~Vi----aS--------  202 (330)
                      -...-.+...|+.  +....+.++.+||.++.+-+ |++.++          +.......|...|.    ++        
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~-wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVI-WDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEE-EEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence            0001111223433  34456778999999999999 999887          55666667777761    11        


Q ss_pred             ----HHHHHhh---------------------------------hccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEEe
Q psy682          203 ----ISLAWKN---------------------------------CQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVVM  244 (330)
Q Consensus       203 ----t~~lW~~---------------------------------SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~f  244 (330)
                          ....|++                                 +++.|+-||++. ++++.|.-|+=|++  .|++|+|
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAf  301 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAF  301 (323)
T ss_pred             CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEe
Confidence                1222332                                 899999999975 68999999999998  9999999


Q ss_pred             CCCccEEEEcc-CCeEEEEe
Q psy682          245 SREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       245 S~dG~~l~s~~-~~~~~~~s  263 (330)
                      |||..++|.|+ |.+|.+|.
T Consensus       302 spd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWK  321 (323)
T ss_pred             CCCCchhhhccCCceEEeee
Confidence            99999999998 66788886

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=9.7e-08  Score=95.53  Aligned_cols=202  Identities=10%  Similarity=0.027  Sum_probs=108.1

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc-C--------c-ceeeee----------cCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-S--------P-MMFSTV----------LDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-~--------~-l~~~~~----------~~d~~~~v~Fs~~~~v~   66 (330)
                      ..|.+||. +|+..+.+..+...+.+.+|||||+. .        + +.....          .........|||||..+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            45666776 57777778889999999999999986 0        0 111110          11112234455555443


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCC--CCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceec
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNP--DYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRH  142 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~--~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~  142 (330)
                                      ..+.+.++..++|..  +++..+.+..|..    ...+..|+|||+ ++..+. ++...++...
T Consensus       255 ----------------a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~----~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        255 ----------------AVALSRDGNSQIYTVNADGSGLRRLTQSSG----IDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             ----------------EEEEccCCCceEEEEECCCCCcEECCCCCC----CCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence                            234455555666664  4555555544432    345678999999 443222 1222222322


Q ss_pred             cCCCCcccee--ee-eeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcE
Q psy682          143 LGDNFSQKLR--VR-HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDV  217 (330)
Q Consensus       143 l~~~~~~~~~--~~-~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtv  217 (330)
                      +.+.-.+.+.  .. ....++||||++|+.++...+  .|.+ |++.+|+..+                           
T Consensus       315 ~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v-~d~~~g~~~~---------------------------  366 (427)
T PRK02889        315 ASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYV-QDLATGQVTA---------------------------  366 (427)
T ss_pred             CCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEE-EECCCCCeEE---------------------------
Confidence            2111111111  11 124568999999765543332  4666 7776443321                           


Q ss_pred             EEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeec
Q psy682          218 KVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       218 kl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~  272 (330)
                                  |... .  ....++|||||+.|+.+.    ...+...+.+|+..+.+
T Consensus       367 ------------lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l  410 (427)
T PRK02889        367 ------------LTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL  410 (427)
T ss_pred             ------------ccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence                        1111 1  235678999999988873    22355556667644433

>KOG1539|consensus

Probab=98.90  E-value=1e-08  Score=107.20  Aligned_cols=172  Identities=20%  Similarity=0.236  Sum_probs=127.5

Q ss_pred             cccCCCcEEEeeccccccccee---ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAF---PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl---~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      .|...|+|-++|++.|....+|   +.|...|.+||...-++.                                     
T Consensus       465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~-------------------------------------  507 (910)
T KOG1539|consen  465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL-------------------------------------  507 (910)
T ss_pred             EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce-------------------------------------
Confidence            4677899999999999999999   799999999999765555                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEE
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  158 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~  158 (330)
                          +||++.++-++.|+.....++                                   ..++++...        .+.
T Consensus       508 ----~vsa~~~Gilkfw~f~~k~l~-----------------------------------~~l~l~~~~--------~~i  540 (910)
T KOG1539|consen  508 ----LVSAGADGILKFWDFKKKVLK-----------------------------------KSLRLGSSI--------TGI  540 (910)
T ss_pred             ----EEEccCcceEEEEecCCccee-----------------------------------eeeccCCCc--------cee
Confidence                588888888999999554211                                   122222211        122


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEcc-cCceeeecCCC
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP  233 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h  233 (330)
                      .-.-.+-. ++.+-.|-+|++ .+..+-+..+.+.||.++|    |++.-+ |-+++|.|+|||+|+. +|.++-.|.-.
T Consensus       541 v~hr~s~l-~a~~~ddf~I~v-vD~~t~kvvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  541 VYHRVSDL-LAIALDDFSIRV-VDVVTRKVVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             eeeehhhh-hhhhcCceeEEE-EEchhhhhhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcceeeeEecC
Confidence            12222222 333445899999 9999999999999999999    444222 5459999999999986 89998877543


Q ss_pred             CCCCCCcEEEeCCCccEEEEc--cCCeEEEEe
Q psy682          234 SGFASPESVVMSREGVIVVNY--ERGHIAAFT  263 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s  263 (330)
                       .  +..+++|||.|.+||+.  +..-+++|+
T Consensus       618 -~--~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  618 -S--PCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -C--cceeeEECCCCCEEEEEEecCceEEEEE
Confidence             2  67899999999999999  345688887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.89  E-value=5.3e-08  Score=87.74  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=57.0

Q ss_pred             eEEEEecCCCeEEEeecc--CCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCC
Q psy682          156 NCFVTTVDSRFLLACGFW--DNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPP  233 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~--D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h  233 (330)
                      +.+.+||+|++|+.+|..  .+.+++ |+.++.+.+... .|                                      
T Consensus       104 n~i~wsP~G~~l~~~g~~n~~G~l~~-wd~~~~~~i~~~-~~--------------------------------------  143 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGNLNGDLEF-WDVRKKKKISTF-EH--------------------------------------  143 (194)
T ss_pred             eEEEECCCCCEEEEEEccCCCcEEEE-EECCCCEEeecc-cc--------------------------------------
Confidence            578899999998887743  346898 998755554322 11                                      


Q ss_pred             CCCCCCcEEEeCCCccEEEEcc-------CCeEEEEeeCCceeeeccC
Q psy682          234 SGFASPESVVMSREGVIVVNYE-------RGHIAAFTMNGNRLRHESH  274 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~~-------~~~~~~~s~nG~~las~~~  274 (330)
                       .  .+..+++||||+.++++.       +..+.+|+.+|++|.....
T Consensus       144 -~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~  188 (194)
T PF08662_consen  144 -S--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF  188 (194)
T ss_pred             -C--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence             1  457899999999999983       5568999999999887753

>KOG0771|consensus

Probab=98.89  E-value=1.1e-08  Score=99.93  Aligned_cols=178  Identities=16%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+|+.||++|+|+..+-+.+.....|.+.|.+++|||||+.                                       
T Consensus       160 atgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~---------------------------------------  200 (398)
T KOG0771|consen  160 ATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKF---------------------------------------  200 (398)
T ss_pred             eeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcE---------------------------------------
Confidence            57899999999997677888889999999999999999988                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC-----ceeccCCCCCCCcce-----eccC--CCCc
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP-----ILTHPTSNNNAPVPK-----RHLG--DNFS  148 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~-----~l~~~s~~~~~~~~~-----~~l~--~~~~  148 (330)
                      +++++++   ...+|+.+.+...+..+-.+ -...-....|+.|+     .+++ ......++..     |+-+  .++.
T Consensus       201 lasig~d---~~~VW~~~~g~~~a~~t~~~-k~~~~~~cRF~~d~~~~~l~laa-~~~~~~~v~~~~~~~w~~~~~l~~~  275 (398)
T KOG0771|consen  201 LASIGAD---SARVWSVNTGAALARKTPFS-KDEMFSSCRFSVDNAQETLRLAA-SQFPGGGVRLCDISLWSGSNFLRLR  275 (398)
T ss_pred             EEEecCC---ceEEEEeccCchhhhcCCcc-cchhhhhceecccCCCceEEEEE-ecCCCCceeEEEeeeeccccccchh
Confidence            3455555   46999998765333322110 01112256788888     3332 1111111111     1100  0111


Q ss_pred             cceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCce
Q psy682          149 QKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       149 ~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      +.+..+  ..++++|+||++ +|-|.-|+++-+ ....+-+.++-.                                  
T Consensus       276 ~~~~~~~siSsl~VS~dGkf-~AlGT~dGsVai-~~~~~lq~~~~v----------------------------------  319 (398)
T KOG0771|consen  276 KKIKRFKSISSLAVSDDGKF-LALGTMDGSVAI-YDAKSLQRLQYV----------------------------------  319 (398)
T ss_pred             hhhhccCcceeEEEcCCCcE-EEEeccCCcEEE-EEeceeeeeEee----------------------------------
Confidence            112222  258999999999 666778999988 776533322111                                  


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                         =+.|..  .|+.|.||||-+.+++-+ +....+.+
T Consensus       320 ---k~aH~~--~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  320 ---KEAHLG--FVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             ---hhhhee--eeeeEEEcCCcCcccccccCCceeEEE
Confidence               123555  899999999999999875 44454444

>KOG2048|consensus

Probab=98.88  E-value=2e-08  Score=102.93  Aligned_cols=199  Identities=15%  Similarity=0.167  Sum_probs=119.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      |+|+.||.||+||+..|+.+...              ++++   +... +..-.||+|.|-.++.+              
T Consensus       170 ~~Gs~Dg~Iriwd~~~~~t~~~~--------------~~~~---d~l~k~~~~iVWSv~~Lrd~tI--------------  218 (691)
T KOG2048|consen  170 AGGSIDGVIRIWDVKSGQTLHII--------------TMQL---DRLSKREPTIVWSVLFLRDSTI--------------  218 (691)
T ss_pred             EecccCceEEEEEcCCCceEEEe--------------eecc---cccccCCceEEEEEEEeecCcE--------------
Confidence            57999999999999887755411              1111   1112 23445677777777764              


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC-------ccc
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF-------SQK  150 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~-------~~~  150 (330)
                          |+++..++|+.||.+.+.+.++. -|..    -+.+++...+.- +.+  +|-+-++.+.++...-       .+.
T Consensus       219 ----~sgDS~G~V~FWd~~~gTLiqS~~~h~a----dVl~Lav~~~~d~vfs--aGvd~~ii~~~~~~~~~~wv~~~~r~  288 (691)
T KOG2048|consen  219 ----ASGDSAGTVTFWDSIFGTLIQSHSCHDA----DVLALAVADNEDRVFS--AGVDPKIIQYSLTTNKSEWVINSRRD  288 (691)
T ss_pred             ----EEecCCceEEEEcccCcchhhhhhhhhc----ceeEEEEcCCCCeEEE--ccCCCceEEEEecCCccceeeecccc
Confidence                99999999999999877666654 5653    466788888855 443  4444444433332221       122


Q ss_pred             eeeee-eEEEEecCCCeEEEeeccCCeEEEe----eecccccccccccCCCCcEE------------EeHHHHHhhhccC
Q psy682          151 LRVRH-NCFVTTVDSRFLLACGFWDNSFREP----FTTMYLALQEGKFDHPNRLF------------SSISLAWKNCQRD  213 (330)
Q Consensus       151 ~~~~~-~~~~~spDg~~i~asg~~D~tirl~----w~~~~g~l~~~l~gH~d~Vi------------aSt~~lW~~SgS~  213 (330)
                      ++.|. .++++.++  . +.+|..|.++-++    +.... ..+...+.|.++|.            ++.+.+|++ ||.
T Consensus       289 ~h~hdvrs~av~~~--~-l~sgG~d~~l~i~~s~~~~~~~-h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl-GS~  363 (691)
T KOG2048|consen  289 LHAHDVRSMAVIEN--A-LISGGRDFTLAICSSREFKNMD-HRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL-GSV  363 (691)
T ss_pred             CCcccceeeeeecc--e-EEecceeeEEEEccccccCchh-hhccccccccceeecCccceEEEEeccccccceec-cCc
Confidence            33332 47777766  4 4455589988551    22221 23777888888772            225555554 111


Q ss_pred             CCcEEEEcccC-----ceee-ecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          214 TSDVKVHTTFG-----DLLR-SLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       214 Dgtvkl~~~~G-----~ll~-tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                          .   .+|     +|++ .++.|+.   +.+-++||||+.||.+.
T Consensus       364 ----~---~~g~~~~~~Llkl~~k~~~n---Is~~aiSPdg~~Ia~st  401 (691)
T KOG2048|consen  364 ----I---LQGEYNYIHLLKLFTKEKEN---ISCAAISPDGNLIAIST  401 (691)
T ss_pred             ----c---cccccChhhheeeecCCccc---eeeeccCCCCCEEEEee
Confidence                0   011     1122 3344444   88999999999999985

>KOG2106|consensus

Probab=98.87  E-value=4.3e-08  Score=98.03  Aligned_cols=212  Identities=18%  Similarity=0.251  Sum_probs=130.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +||+.+|+|-+|+...-+.-++-..|.+.|.++..-.||.+                                       
T Consensus       261 iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl---------------------------------------  301 (626)
T KOG2106|consen  261 ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL---------------------------------------  301 (626)
T ss_pred             EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE---------------------------------------
Confidence            47999999999988554544555589999988888888777                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccC--CCCCCCCCCCCCCccc-cCCCceeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQS--PSYAETPGSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~--~~h~~~~~~~~~~l~f-s~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                         +|+++|+.|-+|+-++..++-.  |.--+    ++..+.= -+|  +.+  +...+.+.+..+...+.+...+|.  
T Consensus       302 ---lSGgKDRki~~Wd~~y~k~r~~elPe~~G----~iRtv~e~~~d--i~v--GTtrN~iL~Gt~~~~f~~~v~gh~de  370 (626)
T KOG2106|consen  302 ---LSGGKDRKIILWDDNYRKLRETELPEQFG----PIRTVAEGKGD--ILV--GTTRNFILQGTLENGFTLTVQGHGDE  370 (626)
T ss_pred             ---eecCccceEEeccccccccccccCchhcC----CeeEEecCCCc--EEE--eeccceEEEeeecCCceEEEEecccc
Confidence               6799999999999776654332  11111    1111110 112  333  223334566777677777777776  


Q ss_pred             -eEEEEecCCCeEEEeeccCCeEEEeeeccccccc-ccccCCCCcE--EE-e-HHHHHhhhccCCCcEEEEcccCceeee
Q psy682          156 -NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFDHPNRL--FS-S-ISLAWKNCQRDTSDVKVHTTFGDLLRS  229 (330)
Q Consensus       156 -~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~gH~d~V--ia-S-t~~lW~~SgS~Dgtvkl~~~~G~ll~t  229 (330)
                       .-++..|+...+++|| -|+.++| |+-  -|++ ..+++.+..-  |. + ++.    -|+..|--.+-+.+-+-+-+
T Consensus       371 lwgla~hps~~q~~T~g-qdk~v~l-W~~--~k~~wt~~~~d~~~~~~fhpsg~va----~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  371 LWGLATHPSKNQLLTCG-QDKHVRL-WND--HKLEWTKIIEDPAECADFHPSGVVA----VGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             eeeEEcCCChhheeecc-CcceEEE-ccC--CceeEEEEecCceeEeeccCcceEE----EeeccceEEEEecccceeEE
Confidence             3688899888878887 6999999 993  3332 1122211110  11 1 222    24444444443333333334


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE--eeCCceeeec
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF--TMNGNRLRHE  272 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~--s~nG~~las~  272 (330)
                      +.--..  +++.|+|||||.++|-|+ +..|.+|  +.||+.+.-.
T Consensus       443 ~~~d~~--~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  443 IHTDNE--QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             EEecCC--ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence            433333  899999999999999998 5556666  4566666444

>KOG4378|consensus

Probab=98.86  E-value=7.4e-09  Score=103.30  Aligned_cols=143  Identities=13%  Similarity=0.165  Sum_probs=98.5

Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEe
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT  161 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s  161 (330)
                      ++++.++|..|.+|-.++.. .                               ..++ .+.+++.       ...|++..
T Consensus        49 vvas~~gdk~~~~~~K~g~~-~-------------------------------~Vp~-~~k~~gd-------~~~Cv~~~   88 (673)
T KOG4378|consen   49 VVASMAGDKVMRIKEKDGKT-P-------------------------------EVPR-VRKLTGD-------NAFCVACA   88 (673)
T ss_pred             EEeecCCceeEEEecccCCC-C-------------------------------ccce-eeccccc-------hHHHHhhh
Confidence            67999999999999997751 0                               1111 2222221       12466666


Q ss_pred             cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------EEe---------------------------H
Q psy682          162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------FSS---------------------------I  203 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------iaS---------------------------t  203 (330)
                      ..+.|+++.| -.+.+|| |++..-.+++-+.||.+.|           |||                           .
T Consensus        89 s~S~y~~sgG-~~~~Vki-wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   89 SQSLYEISGG-QSGCVKI-WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             hcceeeeccC-cCceeee-hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            6678866555 7999999 9997555688899999988           332                           1


Q ss_pred             HHHHh--h-------hccCCCcEEEEcccCc--eeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeCCce
Q psy682          204 SLAWK--N-------CQRDTSDVKVHTTFGD--LLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       204 ~~lW~--~-------SgS~Dgtvkl~~~~G~--ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~nG~~  268 (330)
                      +++-+  .       ++|+||+|-||+++|+  +..-++.|+.  +-..|+|||-. .++|+.+ |..|.+|.+..+.
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA--P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA--PCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC--CcCcceecCCccceEEEecccceEEEeeccccc
Confidence            11100  0       8999999999999885  4566788988  88999999975 4667766 6677777665443

>KOG2106|consensus

Probab=98.83  E-value=1.9e-07  Score=93.59  Aligned_cols=240  Identities=15%  Similarity=0.171  Sum_probs=158.1

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCCCCcC----------ccee------------eeecCccEEEEEeCCCCCe
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYS----------PMMF------------STVLDDVCMSLKFPSNSPI   65 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~----------~l~~------------~~~~~d~~~~v~Fs~~~~v   65 (330)
                      -||+|+.-+.+-|..+..-...|.+||||+-..=+          +|+.            ....++.+...+|.|-.+-
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN  214 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence            48999977777788888899999999999854331          1111            2366788899999998886


Q ss_pred             eEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC----CCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           66 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS----PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~----~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      +                +++.++.. +..|.+.++.+...    .++.   +.-+.++.|.+|+...+  ++++-.+..|
T Consensus       215 l----------------iit~Gk~H-~~Fw~~~~~~l~k~~~~fek~e---kk~Vl~v~F~engdviT--gDS~G~i~Iw  272 (626)
T KOG2106|consen  215 L----------------IITCGKGH-LYFWTLRGGSLVKRQGIFEKRE---KKFVLCVTFLENGDVIT--GDSGGNILIW  272 (626)
T ss_pred             E----------------EEEeCCce-EEEEEccCCceEEEeecccccc---ceEEEEEEEcCCCCEEe--ecCCceEEEE
Confidence            4                57776654 78899876653322    2343   24577999999999776  4444444556


Q ss_pred             ccCCC-Cccceeeeee-EEEE--ecCCCeEEEeeccCCeEEEeeeccc------------ccccccccCCCCcEE-----
Q psy682          142 HLGDN-FSQKLRVRHN-CFVT--TVDSRFLLACGFWDNSFREPFTTMY------------LALQEGKFDHPNRLF-----  200 (330)
Q Consensus       142 ~l~~~-~~~~~~~~~~-~~~~--spDg~~i~asg~~D~tirl~w~~~~------------g~l~~~l~gH~d~Vi-----  200 (330)
                      ..+.. +.+....|.. -|+.  --||+. ++ |..|+.|-+ |+-+-            |-......++.|.++     
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lS-GgKDRki~~-Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN  349 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDGTL-LS-GGKDRKIIL-WDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN  349 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCccE-ee-cCccceEEe-ccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence            54432 2222333332 4443  357754 66 779999998 98432            222334556666431     


Q ss_pred             -------------Ee---HHHHHhh----------hccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          201 -------------SS---ISLAWKN----------CQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       201 -------------aS---t~~lW~~----------SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                                   .+   +-.+|-+          +++.|++|.||+ +-+++-+-.- .+  ++.++.|-|-| .||-|
T Consensus       350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~-~d--~~~~~~fhpsg-~va~G  424 (626)
T KOG2106|consen  350 FILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKII-ED--PAECADFHPSG-VVAVG  424 (626)
T ss_pred             eEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEe-cC--ceeEeeccCcc-eEEEe
Confidence                         01   4456655          889999999999 5566554332 23  78899999999 56555


Q ss_pred             c-CC----------------------eEEEEeeCCceeeeccCccc
Q psy682          255 E-RG----------------------HIAAFTMNGNRLRHESHNDN  277 (330)
Q Consensus       255 ~-~~----------------------~~~~~s~nG~~las~~~~~d  277 (330)
                      . .|                      +++.|+++|..||--+.++.
T Consensus       425 t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  425 TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence            1 22                      37889999999998887754

>KOG1332|consensus

Probab=98.83  E-value=1.8e-08  Score=93.27  Aligned_cols=180  Identities=12%  Similarity=0.071  Sum_probs=106.0

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCCeeEee---eccc-
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSPICHVT---ANTY-   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~---~~~~-   73 (330)
                      ||++.||.|.||+-.+|+  ....+..|++.|++|+|-|-+.=  ++.+- ..+..|-.+.|-.+|....-.   ++++ 
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheyg--l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYG--LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccc--eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            789999999999998875  44557999999999999984322  22222 233345555555553322111   1111 


Q ss_pred             -------e----------eccCCcEEEEEcCCcceEEEeCCCCC---CcccCCCCCCCCCCCCCCcccc-CCCceeccCC
Q psy682           74 -------V----------TLHMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLT-LDPILTHPTS  132 (330)
Q Consensus        74 -------~----------~~~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~~h~~~~~~~~~~l~fs-~D~~l~~~s~  132 (330)
                             |          .+..+....||++-|+.||+|..+.+   +-.++.+|++=|++...+=+.. |--.++++|.
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence                   0          12233456899999999999999873   3566789997666633222221 1112555444


Q ss_pred             CCCCCcceecc-CCCCc----cceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          133 NNNAPVPKRHL-GDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       133 ~~~~~~~~~~l-~~~~~----~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      +++.-++.... .++..    ..+.--...+.+|+-|.+|.++| -|+.+.+ |..+
T Consensus       232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~-GdNkvtl-wke~  286 (299)
T KOG1332|consen  232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG-GDNKVTL-WKEN  286 (299)
T ss_pred             CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec-CCcEEEE-EEeC
Confidence            44433332221 01111    11221234566888898866655 6999999 9764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=8.1e-08  Score=96.08  Aligned_cols=198  Identities=12%  Similarity=0.020  Sum_probs=111.2

Q ss_pred             eeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEc-CCcceEEEeCCCCCCcc---cCCCCCCCCCCCCCCcccc
Q psy682           47 STVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTA-NHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLT  122 (330)
Q Consensus        47 ~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~-~~~~tv~lW~~~~~~~~---~~~~h~~~~~~~~~~l~fs  122 (330)
                      .+.+.+.++..+|||||+.+               +.++. +....|.+|+..++...   ...+|.       ..+.|+
T Consensus       199 lt~~~~~v~~p~wSPDG~~l---------------a~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~-------~~~~wS  256 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKL---------------AYVSFENKKSQLVVHDLRSGARKVVASFRGHN-------GAPAFS  256 (429)
T ss_pred             eccCCCccccceEcCCCCEE---------------EEEEecCCCcEEEEEeCCCCceEEEecCCCcc-------CceeEC
Confidence            34556678888899998876               22332 33457999998765432   223442       358999


Q ss_pred             CCCc-eeccC-CCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCC
Q psy682          123 LDPI-LTHPT-SNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHP  196 (330)
Q Consensus       123 ~D~~-l~~~s-~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~  196 (330)
                      |||+ ++..+ .++...++...+...-...+..+   ..+.+++|||+.|+.++..++..+| |.++. +.... +.++.
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I-~~~~~~~~~~~-~l~~~  334 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQV-YRMSASGGGAS-LVGGR  334 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceE-EEEECCCCCeE-EecCC
Confidence            9998 55422 23322233333321111122211   2467899999987777767888999 87643 22221 11332


Q ss_pred             Cc-E-EEe--HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCe---EEEEeeCCce
Q psy682          197 NR-L-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGH---IAAFTMNGNR  268 (330)
Q Consensus       197 d~-V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~---~~~~s~nG~~  268 (330)
                      .. . +..  ...+   .++.|+.+++...+|+......++    ...+++|||||+.|++++ ++.   +.+++.+|+.
T Consensus       335 ~~~~~~SpDG~~ia---~~~~~~i~~~Dl~~g~~~~lt~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~  407 (429)
T PRK01742        335 GYSAQISADGKTLV---MINGDNVVKQDLTSGSTEVLSSTF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF  407 (429)
T ss_pred             CCCccCCCCCCEEE---EEcCCCEEEEECCCCCeEEecCCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            21 1 111  1111   233366665333456654322232    346788999999999874 333   4455778998


Q ss_pred             eeeccCc
Q psy682          269 LRHESHN  275 (330)
Q Consensus       269 las~~~~  275 (330)
                      +..+..+
T Consensus       408 ~~~l~~~  414 (429)
T PRK01742        408 KARLPGS  414 (429)
T ss_pred             eEEccCC
Confidence            8877643

>KOG0649|consensus

Probab=98.77  E-value=1.1e-07  Score=88.21  Aligned_cols=101  Identities=10%  Similarity=0.069  Sum_probs=69.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe----HHHHHhhhccCCCcEEEEc-ccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS----ISLAWKNCQRDTSDVKVHT-TFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS----t~~lW~~SgS~Dgtvkl~~-~~G~ll~  228 (330)
                      |+.-+-|....|+.+| -|+-+-. |++++|+.+.++.||.|.|  +++    --++   ||+.|||||||+ .+++.+.
T Consensus       118 Nam~ldP~enSi~~Ag-GD~~~y~-~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil---sG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  118 NAMWLDPSENSILFAG-GDGVIYQ-VDLEDGRIQREYRGHTDYVHSVVGRNANGQIL---SGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             ceeEeccCCCcEEEec-CCeEEEE-EEecCCEEEEEEcCCcceeeeeeecccCccee---ecCCCccEEEEeccccceeE
Confidence            4555565444445555 4999998 9999999999999999998  332    3334   999999999996 5899998


Q ss_pred             ecCCCCC--C------CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682          229 SLDPPSG--F------ASPESVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       229 tL~~h~~--~------~~v~~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                      +++....  +      ..+-+++-+.  -.+++|+--.+.+|-
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgGp~lslwh  233 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGGPKLSLWH  233 (325)
T ss_pred             EeccccChhhcCcccCceeEEEeccC--ceEEecCCCceeEEe
Confidence            8876322  1      1334444443  367777554444443

>KOG0639|consensus

Probab=98.70  E-value=1e-07  Score=95.44  Aligned_cols=164  Identities=20%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      ++-.||.|++||+.+..+.+.|+||++.+-+|.+|+||.-                                        
T Consensus       526 sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk----------------------------------------  565 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK----------------------------------------  565 (705)
T ss_pred             eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce----------------------------------------
Confidence            4557999999999999999999999999999999999988                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eE
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NC  157 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~  157 (330)
                       +=|++.|.+|+-|+....  +++..|.  -.+.+++|...|.+. +++.-.+++  ++..+..++-.-.+..|.   .+
T Consensus       566 -lWTGGlDntvRcWDlreg--rqlqqhd--F~SQIfSLg~cP~~dWlavGMens~--vevlh~skp~kyqlhlheScVLS  638 (705)
T KOG0639|consen  566 -LWTGGLDNTVRCWDLREG--RQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSN--VEVLHTSKPEKYQLHLHESCVLS  638 (705)
T ss_pred             -eecCCCccceeehhhhhh--hhhhhhh--hhhhheecccCCCccceeeecccCc--EEEEecCCccceeecccccEEEE
Confidence             589999999999998543  4555564  236788899999998 655323222  333333332111122232   35


Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCC
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA  237 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~  237 (330)
                      +-|++=||+++++| .|+-+.. |.+--|--+          |-+                              .+. .
T Consensus       639 lKFa~cGkwfvStG-kDnlLna-wrtPyGasi----------Fqs------------------------------kE~-S  675 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTG-KDNLLNA-WRTPYGASI----------FQS------------------------------KES-S  675 (705)
T ss_pred             EEecccCceeeecC-chhhhhh-ccCccccce----------eec------------------------------ccc-C
Confidence            77899999977777 7988888 887533211          111                              011 2


Q ss_pred             CCcEEEeCCCccEEEEcc
Q psy682          238 SPESVVMSREGVIVVNYE  255 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~  255 (330)
                      +|.+..+|.|.++||+|+
T Consensus       676 sVlsCDIS~ddkyIVTGS  693 (705)
T KOG0639|consen  676 SVLSCDISFDDKYIVTGS  693 (705)
T ss_pred             cceeeeeccCceEEEecC
Confidence            799999999999999995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.68  E-value=1.3e-06  Score=83.51  Aligned_cols=221  Identities=14%  Similarity=0.117  Sum_probs=123.1

Q ss_pred             eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-
Q psy682           22 AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-  100 (330)
Q Consensus        22 tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-  100 (330)
                      .-.++...|....+..+|++..+...+. ......+.|+||++.+|++..                .+..|..|+.+.. 
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~----------------~~~~i~~~~~~~~g   68 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVR----------------PEFRVLSYRIADDG   68 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEEC----------------CCCcEEEEEECCCC
Confidence            3356778888888866676644444432 244567899999999866532                2345666666421 


Q ss_pred             CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--CCC---ccceee--eeeEEEEecCCCeEEEeec
Q psy682          101 ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--DNF---SQKLRV--RHNCFVTTVDSRFLLACGF  172 (330)
Q Consensus       101 ~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~---~~~~~~--~~~~~~~spDg~~i~asg~  172 (330)
                      .+.......  ....+..+.|+||++ +.+++. .+..+..+.+.  +..   .+.+..  +..+++++|||++++++.+
T Consensus        69 ~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         69 ALTFAAESP--LPGSPTHISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             ceEEeeeec--CCCCceEEEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC
Confidence            111111010  112345799999999 443222 22223333221  101   111111  2356779999999999999


Q ss_pred             cCCeEEEeeeccc-ccccc-------cccC-CCCcE-EEe-HHHHHhhhccCCCcEEEEccc---Cce--eeecCCCCC-
Q psy682          173 WDNSFREPFTTMY-LALQE-------GKFD-HPNRL-FSS-ISLAWKNCQRDTSDVKVHTTF---GDL--LRSLDPPSG-  235 (330)
Q Consensus       173 ~D~tirl~w~~~~-g~l~~-------~l~g-H~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~---G~l--l~tL~~h~~-  235 (330)
                      .+++|++ |++++ |++..       ...| +...+ |.. --.++- +...+++|.+|+.+   |++  +.++..+.. 
T Consensus       146 ~~~~v~v-~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv-~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        146 KEDRIRL-FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC-VNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             CCCEEEE-EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE-EecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence            9999999 99875 43321       0111 11122 222 011111 23347899998763   433  555432211 


Q ss_pred             ---CCCCcEEEeCCCccEEEEcc--CCeEEEEee
Q psy682          236 ---FASPESVVMSREGVIVVNYE--RGHIAAFTM  264 (330)
Q Consensus       236 ---~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~  264 (330)
                         ...+..+.|+|||+.|+.+.  .+.+..|.+
T Consensus       224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             CCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence               01344699999999888773  678888876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.68  E-value=1e-06  Score=86.53  Aligned_cols=173  Identities=13%  Similarity=0.035  Sum_probs=89.7

Q ss_pred             CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eecc-CCCCCCCcceeccCCCCccceeee---eeEEEEec
Q psy682           88 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHP-TSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTV  162 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~-s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~sp  162 (330)
                      ....|++|+..++.......+.    ....+..|+||++ ++.. +.++...+....+...-.+.+..+   .....++|
T Consensus       212 ~~~~i~v~d~~~g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~  287 (417)
T TIGR02800       212 GKPEIYVQDLATGQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP  287 (417)
T ss_pred             CCcEEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC
Confidence            3456889988766544443333    2345688999998 4432 233333444555433211222221   12456899


Q ss_pred             CCCeEEEeeccCCe--EEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCC-C--cEEEEcccCceeeecC
Q psy682          163 DSRFLLACGFWDNS--FREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDT-S--DVKVHTTFGDLLRSLD  231 (330)
Q Consensus       163 Dg~~i~asg~~D~t--irl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~D-g--tvkl~~~~G~ll~tL~  231 (330)
                      ||+.|+.++..++.  |-+ +++++++... +..+...+    +..  ...+   .++.+ +  .|.+++..+...+.+.
T Consensus       288 dg~~l~~~s~~~g~~~iy~-~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~---~~~~~~~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       288 DGKSIAFTSDRGGSPQIYM-MDADGGEVRR-LTFRGGYNASPSWSPDGDLIA---FVHREGGGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             CCCEEEEEECCCCCceEEE-EECCCCCEEE-eecCCCCccCeEECCCCCEEE---EEEccCCceEEEEEeCCCCCeEEcc
Confidence            99997766654444  444 6666555432 22222211    111  1111   12222 2  4444555544455555


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeec
Q psy682          232 PPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~  272 (330)
                      .+.   .....+|||||+.|+..+    ...+..+..+|+....+
T Consensus       363 ~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       363 DTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             CCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            432   345678999999887763    22456666666554433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1273|consensus

Probab=98.67  E-value=2.8e-07  Score=88.11  Aligned_cols=243  Identities=14%  Similarity=0.173  Sum_probs=140.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |.|..||-|-+||+.+-..-+.|.+|...|.++++|+||+.                                       
T Consensus        39 AvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~---------------------------------------   79 (405)
T KOG1273|consen   39 AVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRK---------------------------------------   79 (405)
T ss_pred             eeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCE---------------------------------------
Confidence            57889999999999987777889999999999999999998                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc-------ceeccCCCCccce
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV-------PKRHLGDNFSQKL  151 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~-------~~~~l~~~~~~~~  151 (330)
                        +.|+++|..|++|+.-.+. +.+.     .-.+++....+.|--. ...++-=...+.       ..+-|...-+..+
T Consensus        80 --LltsS~D~si~lwDl~~gs~l~ri-----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl  152 (405)
T KOG1273|consen   80 --LLTSSRDWSIKLWDLLKGSPLKRI-----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL  152 (405)
T ss_pred             --eeeecCCceeEEEeccCCCceeEE-----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence              5889999999999974332 2111     1112333333332221 111000000000       0000100001112


Q ss_pred             eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc---------------------cCCCCcEEEe--------
Q psy682          152 RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK---------------------FDHPNRLFSS--------  202 (330)
Q Consensus       152 ~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l---------------------~gH~d~ViaS--------  202 (330)
                      .....+..|.+-|+||+++ -..+-+-+ .+.++-+++..+                     ..-+|+||-.        
T Consensus       153 n~sas~~~fdr~g~yIitG-tsKGkllv-~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITG-TSKGKLLV-YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD  230 (405)
T ss_pred             ccccccccccCCCCEEEEe-cCcceEEE-EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence            2222345578888886664 45665555 555444332221                     2233444210        


Q ss_pred             -----------------HHHHHhh------------hccCCCcEEEE-cccCceeeecCCCCCCCCCcEEEeCCCccEEE
Q psy682          203 -----------------ISLAWKN------------CQRDTSDVKVH-TTFGDLLRSLDPPSGFASPESVVMSREGVIVV  252 (330)
Q Consensus       203 -----------------t~~lW~~------------SgS~Dgtvkl~-~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~  252 (330)
                                       .-.-|+-            +.+.-..+-|| ...|.|++-|.|..+- ..-.|..-|---+|+
T Consensus       231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~rp~i~  309 (405)
T KOG1273|consen  231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVRPIIA  309 (405)
T ss_pred             cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecccccceeeee
Confidence                             1112443            11233456678 4579999999998861 455677888888999


Q ss_pred             EccCCeEEEEeeCCceeeeccCccccccccccccchh---hhhcccCCCcc
Q psy682          253 NYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLP---EMLVNSNGYCL  300 (330)
Q Consensus       253 s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p---~~l~n~~~~~~  300 (330)
                      |-++|.+..|+..-.        .+-..+-|+|=++.   |...-.+.||.
T Consensus       310 si~sg~v~iw~~~~~--------enwsafAPdFqeleeNieY~EkEdeFDi  352 (405)
T KOG1273|consen  310 SIASGVVYIWAVVQV--------ENWSAFAPDFQELEENIEYEEKEDEFDI  352 (405)
T ss_pred             eccCCceEEEEeecc--------cchhhcCchHHHHHhhhhhccccccCCc
Confidence            999999999985522        22334456665554   35566666664

>KOG4328|consensus

Probab=98.67  E-value=3.4e-07  Score=90.74  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=121.4

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-----CcccCCCCCCCCCCCCCCccccC
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-----ASIQSPSYAETPGSPPGNLPLTL  123 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-----~~~~~~~h~~~~~~~~~~l~fs~  123 (330)
                      -+...+.++.|+|--+.               -..|.++.-+.|=+||.+++     ...-+..|+.    ++.++-|+|
T Consensus       184 v~~~Rit~l~fHPt~~~---------------~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~----~Vs~l~F~P  244 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENR---------------KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG----PVSGLKFSP  244 (498)
T ss_pred             ecccceEEEEecccCcc---------------eEEEEccCCCcEEEEecCCCCCccCceEEeccCCc----cccceEecC
Confidence            44455666666664442               12488899999999999522     2334457764    677799988


Q ss_pred             CCc--eeccCCCCCCCcceeccCCCCccc------eeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc-cccccC
Q psy682          124 DPI--LTHPTSNNNAPVPKRHLGDNFSQK------LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL-QEGKFD  194 (330)
Q Consensus       124 D~~--l~~~s~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l-~~~l~g  194 (330)
                      ...  +.+.|++++....  .+.....+.      -...-..+-|+.+.+.++....++ .+-+ |++.+++- ..-+.=
T Consensus       245 ~n~s~i~ssSyDGtiR~~--D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~-iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  245 ANTSQIYSSSYDGTIRLQ--DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNV-IDLRTDGSEYENLRL  320 (498)
T ss_pred             CChhheeeeccCceeeee--eecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEE-EEeecCCccchhhhh
Confidence            765  5555666654432  221111111      112223556788888888888777 7888 88876543 555556


Q ss_pred             CCCcE--EE--e---HHHHHhhhccCCCcEEEEcc---cCce---eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEE
Q psy682          195 HPNRL--FS--S---ISLAWKNCQRDTSDVKVHTT---FGDL---LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIA  260 (330)
Q Consensus       195 H~d~V--ia--S---t~~lW~~SgS~Dgtvkl~~~---~G~l---l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~  260 (330)
                      |.-.|  ++  .   -+.+   ++|.|+|+|||+.   .++-   |.++ .|.-  +|++..|||.|-.|++-+ |..|.
T Consensus       321 h~kKI~sv~~NP~~p~~la---T~s~D~T~kIWD~R~l~~K~sp~lst~-~Hrr--sV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLA---TASLDQTAKIWDLRQLRGKASPFLSTL-PHRR--SVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             hhcccceeecCCCCchhee---ecccCcceeeeehhhhcCCCCcceecc-cccc--eeeeeEEcCCCCceEeeccCCceE
Confidence            66666  22  1   4444   8999999999985   3544   4444 5666  899999999988888876 77899


Q ss_pred             EEee
Q psy682          261 AFTM  264 (330)
Q Consensus       261 ~~s~  264 (330)
                      +|+.
T Consensus       395 v~ds  398 (498)
T KOG4328|consen  395 VFDS  398 (498)
T ss_pred             Eeec
Confidence            9975

>KOG1036|consensus

Probab=98.66  E-value=1.8e-07  Score=88.75  Aligned_cols=189  Identities=10%  Similarity=0.088  Sum_probs=118.7

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCcee
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT  128 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~  128 (330)
                      -.+|.|-+|+|+|.+..+                +|+ +.|+++++++.....+++...|..    +.....|..+-+..
T Consensus        11 pP~d~IS~v~f~~~~~~L----------------Lvs-sWDgslrlYdv~~~~l~~~~~~~~----plL~c~F~d~~~~~   69 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDL----------------LVS-SWDGSLRLYDVPANSLKLKFKHGA----PLLDCAFADESTIV   69 (323)
T ss_pred             CChhceeeEEEcCcCCcE----------------EEE-eccCcEEEEeccchhhhhheecCC----ceeeeeccCCceEE
Confidence            457889999999888875                344 499999999999888888888874    56668999888877


Q ss_pred             ccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE------
Q psy682          129 HPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL------  199 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V------  199 (330)
                      +...++......+..+...  .+.-|   ..|+..++.-.- +.+|+||++||+ |+... +....-++-...|      
T Consensus        70 ~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~-vIsgsWD~~ik~-wD~R~-~~~~~~~d~~kkVy~~~v~  144 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGC-VISGSWDKTIKF-WDPRN-KVVVGTFDQGKKVYCMDVS  144 (323)
T ss_pred             EeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCe-EEEcccCccEEE-Eeccc-cccccccccCceEEEEecc
Confidence            6333333333333332211  11111   257777764334 456779999999 99863 3222222222344      


Q ss_pred             ----EE-e---HHHHHhh-------------------------------hccCCCcEEE-E-ccc---CceeeecCCCCC
Q psy682          200 ----FS-S---ISLAWKN-------------------------------CQRDTSDVKV-H-TTF---GDLLRSLDPPSG  235 (330)
Q Consensus       200 ----ia-S---t~~lW~~-------------------------------SgS~Dgtvkl-~-~~~---G~ll~tL~~h~~  235 (330)
                          ++ .   .+.+|++                               .+|.||-|-+ + +.+   -.--..|+-|..
T Consensus       145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~  224 (323)
T KOG1036|consen  145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL  224 (323)
T ss_pred             CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence                22 1   3334444                               6777777776 2 211   122334555543


Q ss_pred             C-------CCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          236 F-------ASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       236 ~-------~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      .       -+|++|+|+|=-+++|+|+ ||.+..|.
T Consensus       225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             ccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence            1       3899999999999999994 77654444

>KOG4328|consensus

Probab=98.66  E-value=3.9e-07  Score=90.28  Aligned_cols=226  Identities=20%  Similarity=0.228  Sum_probs=134.0

Q ss_pred             CcccCCCcEEEeecc----cccccceeecCCCceeEEEeCCCCCc-----------Cccee--------eee--cCccEE
Q psy682            1 MSGGDKGIVEVWRTF----NLALLYAFPSCDSSVRSLALSHDQKY-----------SPMMF--------STV--LDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~----~g~~l~tl~gH~~~V~svafSpdg~~-----------~~l~~--------~~~--~~d~~~   55 (330)
                      |+|+.-|+|-|||+.    +-.-..-|..|+..|.++.|+|...-           ...-+        .+.  ..-.+.
T Consensus       204 a~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs  283 (498)
T KOG4328|consen  204 AVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS  283 (498)
T ss_pred             EEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeee
Confidence            578899999999993    22345558999999999999995322           11111        112  122345


Q ss_pred             EEEeCCCCCeeEeeeccc--------------------------eeccC-CcEEEEEcCCcceEEEeCCCCCCcccCCCC
Q psy682           56 SLKFPSNSPICHVTANTY--------------------------VTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSY  108 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~--------------------------~~~~~-~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h  108 (330)
                      ++-|+.+.+.+++..+-.                          +.+.| -=.+.|||+.|.|+|+|+...-.-+-    
T Consensus       284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~----  359 (498)
T KOG4328|consen  284 SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA----  359 (498)
T ss_pred             eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC----
Confidence            566888888777765322                          12221 22347999999999999983221000    


Q ss_pred             CCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecc----
Q psy682          109 AETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTM----  184 (330)
Q Consensus       109 ~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~----  184 (330)
                               +      |.+-+                 +.-+..+  ++..|||+|-.|++++ .|..||| |+..    
T Consensus       360 ---------s------p~lst-----------------~~HrrsV--~sAyFSPs~gtl~TT~-~D~~IRv-~dss~~sa  403 (498)
T KOG4328|consen  360 ---------S------PFLST-----------------LPHRRSV--NSAYFSPSGGTLLTTC-QDNEIRV-FDSSCISA  403 (498)
T ss_pred             ---------C------cceec-----------------cccccee--eeeEEcCCCCceEeec-cCCceEE-eecccccc
Confidence                     0      11110                 1111222  3445999888866666 6999999 9972    


Q ss_pred             cccccccccCCCCcE--EEe-HHHHHhh------hccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          185 YLALQEGKFDHPNRL--FSS-ISLAWKN------CQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       185 ~g~l~~~l~gH~d~V--iaS-t~~lW~~------SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      .-.+. +..-|...-  -.+ .-..|++      .|-.-..|-+.+.+ |+++..|-.+.......-+.|.|=+..+++|
T Consensus       404 ~~~p~-~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  404 KDEPL-GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             cCCcc-ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence            11222 222333322  012 2223655      45555556676654 5667777766553344556899999988888


Q ss_pred             c--CCeEEEEeeCCc
Q psy682          255 E--RGHIAAFTMNGN  267 (330)
Q Consensus       255 ~--~~~~~~~s~nG~  267 (330)
                      +  .|.+++|+-++.
T Consensus       483 ~~s~Gki~vft~k~~  497 (498)
T KOG4328|consen  483 GNSSGKIYVFTNKKS  497 (498)
T ss_pred             CCccceEEEEecCCC
Confidence            4  778999986653

>KOG0642|consensus

Probab=98.66  E-value=7.1e-08  Score=97.40  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=96.9

Q ss_pred             eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC
Q psy682           46 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP  125 (330)
Q Consensus        46 ~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~  125 (330)
                      +..-|.|.+..+.|+|-.|++                 ++|+.++++|+|+.+..     .-|.                
T Consensus       289 tl~s~~d~ir~l~~~~sep~l-----------------it~sed~~lk~WnLqk~-----~~s~----------------  330 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVL-----------------ITASEDGTLKLWNLQKA-----KKSA----------------  330 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeE-----------------EEeccccchhhhhhccc-----CCcc----------------
Confidence            334567777778888877764                 88999999999999331     0110                


Q ss_pred             ceeccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecc------c----ccccccc
Q psy682          126 ILTHPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTM------Y----LALQEGK  192 (330)
Q Consensus       126 ~l~~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~------~----g~l~~~l  192 (330)
                              +-.-...+.        ++.|   ..|+++++.++.++++| -|++||+ |++-      +    -.+..++
T Consensus       331 --------~~~~epi~t--------fraH~gPVl~v~v~~n~~~~ysgg-~Dg~I~~-w~~p~n~dp~ds~dp~vl~~~l  392 (577)
T KOG0642|consen  331 --------EKDVEPILT--------FRAHEGPVLCVVVPSNGEHCYSGG-IDGTIRC-WNLPPNQDPDDSYDPSVLSGTL  392 (577)
T ss_pred             --------ccceeeeEE--------EecccCceEEEEecCCceEEEeec-cCceeee-eccCCCCCcccccCcchhccce
Confidence                    000011222        3333   36999999999988766 6999999 9542      1    2478899


Q ss_pred             cCCCCcE--EE-e---HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeC
Q psy682          193 FDHPNRL--FS-S---ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMS  245 (330)
Q Consensus       193 ~gH~d~V--ia-S---t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS  245 (330)
                      .||.|.|  ++ |   .-.+   |.|.||||++|...+....++..++..+-+.+|.|-
T Consensus       393 ~Ghtdavw~l~~s~~~~~Ll---scs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~  448 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLL---SCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRT  448 (577)
T ss_pred             eccccceeeeeeccccccee---eecCCceEEeeccCCcCccccCCccccCCcceEeec
Confidence            9999988  32 2   2333   899999999998877666888877665556666664

>KOG0646|consensus

Probab=98.64  E-value=8.4e-07  Score=88.06  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccc---------ccccccccCCCCcE----EEe----HHHHHhhhccCCCcEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMY---------LALQEGKFDHPNRL----FSS----ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~---------g~l~~~l~gH~d~V----iaS----t~~lW~~SgS~Dgtvk  218 (330)
                      .|+.||-||.+|++ |+.|+.+.+ |.+-+         =+.+..+.+|.=.|    |-+    ...+   ++|.|.|||
T Consensus       127 TcL~fs~dgs~iiT-gskDg~V~v-W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~---TaS~D~t~k  201 (476)
T KOG0646|consen  127 TCLKFSDDGSHIIT-GSKDGAVLV-WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY---TASEDRTIK  201 (476)
T ss_pred             eEEEEeCCCcEEEe-cCCCccEEE-EEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE---EecCCceEE
Confidence            69999999999655 568999999 99842         13456666776655    211    2223   899999999


Q ss_pred             EEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          219 VHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       219 l~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      +|+. .|.||.++.-+.   ++.+|++.|-+..+..|
T Consensus       202 ~wdlS~g~LLlti~fp~---si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITFPS---SIKAVALDPAERVVYIG  235 (476)
T ss_pred             EEEeccceeeEEEecCC---cceeEEEcccccEEEec
Confidence            9987 689998877553   58888888877666555

>KOG0321|consensus

Probab=98.64  E-value=2e-07  Score=95.45  Aligned_cols=182  Identities=14%  Similarity=0.100  Sum_probs=108.0

Q ss_pred             CcccCCCcEEEeecccc------cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682            1 MSGGDKGIVEVWRTFNL------ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g------~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      |.|.+||.|.|.+...-      ++++-+.+|...|-+++.-| |+.                                 
T Consensus        68 avadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~---------------------------------  113 (720)
T KOG0321|consen   68 AVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES---------------------------------  113 (720)
T ss_pred             EEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce---------------------------------
Confidence            35788999999986531      23455667777777777766 555                                 


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCCcccC---CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccce
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL  151 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~---~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~  151 (330)
                             .+|++++|-|+|.|+..+..+.+.   .||+.                                         
T Consensus       114 -------~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~-----------------------------------------  145 (720)
T KOG0321|consen  114 -------LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG-----------------------------------------  145 (720)
T ss_pred             -------eEEEccCCceeeeeeeccceeecceeeccccc-----------------------------------------
Confidence                   468999999999999977654432   13321                                         


Q ss_pred             eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc-------ccccccCCCC--------------------cEEEe-H
Q psy682          152 RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-------LQEGKFDHPN--------------------RLFSS-I  203 (330)
Q Consensus       152 ~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-------l~~~l~gH~d--------------------~ViaS-t  203 (330)
                        ...+++|.|+.+.++++|+.|+-|.| |++.--.       ..+..-+|..                    .++.+ |
T Consensus       146 --SvkS~cf~~~n~~vF~tGgRDg~ill-WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  146 --SVKSECFMPTNPAVFCTGGRDGEILL-WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             --ccchhhhccCCCcceeeccCCCcEEE-EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence              12345588988888999999999999 9973111       0111111222                    11111 1


Q ss_pred             HHHHhh-----hcc-CCCcEEEEccc-------CceeeecCCCCCC-CCCcEEEeCCC--cc-EEEEccCCeEEEEeeCC
Q psy682          204 SLAWKN-----CQR-DTSDVKVHTTF-------GDLLRSLDPPSGF-ASPESVVMSRE--GV-IVVNYERGHIAAFTMNG  266 (330)
Q Consensus       204 ~~lW~~-----SgS-~Dgtvkl~~~~-------G~ll~tL~~h~~~-~~v~~v~fS~d--G~-~l~s~~~~~~~~~s~nG  266 (330)
                      +.+..-     |++ .|++||+|++.       ++.++...-|... ..+=-+.|.-|  |. ..|+..|++|+.|++-+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            211110     444 59999999863       3344433333221 12333444444  55 45667899999998765


Q ss_pred             c
Q psy682          267 N  267 (330)
Q Consensus       267 ~  267 (330)
                      .
T Consensus       303 ~  303 (720)
T KOG0321|consen  303 L  303 (720)
T ss_pred             c
Confidence            4

>KOG2919|consensus

Probab=98.63  E-value=8e-07  Score=85.22  Aligned_cols=183  Identities=9%  Similarity=0.062  Sum_probs=121.2

Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCC---CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC------C
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSP---SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------F  147 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~---~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~------~  147 (330)
                      .|++-..++.+++.-||+|+.-.+.++-+-   .|.+.+. ...+|.|+|||...-  +|-..-++.-.+.-|      +
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~t-aAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYT-AAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhh-hheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcch
Confidence            345556678899999999998777666542   4444333 467899999999543  222222222221111      0


Q ss_pred             c------cceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee-HHHHHhhhcc-CCC
Q psy682          148 S------QKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS-ISLAWKNCQR-DTS  215 (330)
Q Consensus       148 ~------~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS-t~~lW~~SgS-~Dg  215 (330)
                      .      +...+-..|++|+|-....+++|+.-.++-| ..-+.+++++.+.||..-|-    -. --++.  ||+ .|-
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~gi-y~~~~~~pl~llggh~gGvThL~~~edGn~lf--sGaRk~d  273 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGI-YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF--SGARKDD  273 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeee-EecCCCCceeeecccCCCeeeEEeccCcCeec--ccccCCC
Confidence            0      0112223699999965545888888999888 88878899999999999981    11 11222  344 466


Q ss_pred             cEEEEcc--cCceeeecCCCCCCCCCcE--EEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          216 DVKVHTT--FGDLLRSLDPPSGFASPES--VVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       216 tvkl~~~--~G~ll~tL~~h~~~~~v~~--v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      .|..|+.  .++.+..|..|-+. .=--  ..+-|+|++||+|+ +|.++.|..++
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            7778986  58899999988652 2223  34559999999996 89999998664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=3.6e-06  Score=83.74  Aligned_cols=204  Identities=11%  Similarity=0.050  Sum_probs=106.6

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCCCCc---------Cc-ceeee---e-------cCccEEEEEeCCCCCeeE
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---------SP-MMFST---V-------LDDVCMSLKFPSNSPICH   67 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---------~~-l~~~~---~-------~~d~~~~v~Fs~~~~v~~   67 (330)
                      .|.+++.+ |...+.+..|...+.+.+|||||+.         .+ +....   +       .........|||||..++
T Consensus       180 ~l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            46667774 5556677778889999999999986         00 11100   0       011122345666665542


Q ss_pred             eeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccCC
Q psy682           68 VTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLGD  145 (330)
Q Consensus        68 ~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~~  145 (330)
                      ++              .+.+....|.+|+.+++....+..+.    .......|+||++ ++..+. ++...+....+.+
T Consensus       259 ~~--------------~~~~g~~~Iy~~d~~~~~~~~lt~~~----~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        259 FV--------------LSKDGNPEIYVMDLASRQLSRVTNHP----AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             EE--------------EccCCCceEEEEECCCCCeEEcccCC----CCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            22              22333445777788777666554443    2345678999998 443221 1112222322211


Q ss_pred             CCcccee--ee-eeEEEEecCCCeEEEeeccCCeEEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEc
Q psy682          146 NFSQKLR--VR-HNCFVTTVDSRFLLACGFWDNSFRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       146 ~~~~~~~--~~-~~~~~~spDg~~i~asg~~D~tirl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~  221 (330)
                      .-.+.+.  .. ....+++|||++|+.++..++..+| -|++++|+..                                
T Consensus       321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--------------------------------  368 (430)
T PRK00178        321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--------------------------------  368 (430)
T ss_pred             CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--------------------------------
Confidence            1011111  11 1234688999987766654443333 1454433221                                


Q ss_pred             ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeec
Q psy682          222 TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       222 ~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~  272 (330)
                             .|.. ..  .....+|||||+.|+..+    +..+...+.+|+....+
T Consensus       369 -------~lt~-~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        369 -------ILTD-TS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             -------EccC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence                   1111 01  223458999999998763    34467777777654333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=3.4e-06  Score=85.17  Aligned_cols=204  Identities=13%  Similarity=0.056  Sum_probs=108.7

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCCCCc-C---------cceeee----------ecCccEEEEEeCCCCCeeE
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-S---------PMMFST----------VLDDVCMSLKFPSNSPICH   67 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-~---------~l~~~~----------~~~d~~~~v~Fs~~~~v~~   67 (330)
                      .|.+++. +|...+.+..+...+.+.+|||||+. .         -+....          .-........|||||..++
T Consensus       199 ~l~i~d~-dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADY-DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeC-CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            5666676 45555677778889999999999987 0         011100          0001112345555655442


Q ss_pred             eeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccCC
Q psy682           68 VTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLGD  145 (330)
Q Consensus        68 ~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~~  145 (330)
                      +.              .+.+....|.+|+.+++.......+.    .......|+||++ ++..+. ++...+....+.+
T Consensus       278 ~~--------------~~~~g~~~Iy~~dl~tg~~~~lt~~~----~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        278 LV--------------LSKDGQPEIYVVDIATKALTRITRHR----AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             EE--------------EeCCCCeEEEEEECCCCCeEECccCC----CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            21              22233334677777777666655443    2345678999998 433221 2222233333321


Q ss_pred             CCcccee--ee-eeEEEEecCCCeEEEeeccCCeEEEeeec--ccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEE
Q psy682          146 NFSQKLR--VR-HNCFVTTVDSRFLLACGFWDNSFREPFTT--MYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       146 ~~~~~~~--~~-~~~~~~spDg~~i~asg~~D~tirl~w~~--~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~  220 (330)
                      .-.+.+.  .. ....+++|||++|+.++..++..++ |-+  ++|++.                               
T Consensus       340 g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I-~~~dl~~g~~~-------------------------------  387 (448)
T PRK04792        340 GKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNI-ARQDLETGAMQ-------------------------------  387 (448)
T ss_pred             CCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEE-EEEECCCCCeE-------------------------------
Confidence            1111111  11 1235689999998777765666666 543  322221                               


Q ss_pred             cccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeecc
Q psy682          221 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       221 ~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~~  273 (330)
                              .|... .  .....+|||||+.|+...    +..+..++.+|+....+.
T Consensus       388 --------~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        388 --------VLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             --------EccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence                    11110 0  112347999999887752    334777788888766654

>KOG1524|consensus

Probab=98.58  E-value=3.2e-07  Score=92.52  Aligned_cols=181  Identities=14%  Similarity=0.109  Sum_probs=124.3

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      .+.||.+.+-+- .|+--+...+|.+.|.+-.+||||.-                                         
T Consensus        81 ~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtg-----------------------------------------  118 (737)
T KOG1524|consen   81 CSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAG-----------------------------------------  118 (737)
T ss_pred             EcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCce-----------------------------------------
Confidence            456666666643 45555666777777777777777655                                         


Q ss_pred             EEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEec
Q psy682           83 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV  162 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~sp  162 (330)
                      ++|++.|+-||+|...|....+..                                   +.+.        ...|++..|
T Consensus       119 Llt~GEDG~iKiWSrsGMLRStl~-----------------------------------Q~~~--------~v~c~~W~p  155 (737)
T KOG1524|consen  119 LLTAGEDGVIKIWSRSGMLRSTVV-----------------------------------QNEE--------SIRCARWAP  155 (737)
T ss_pred             eeeecCCceEEEEeccchHHHHHh-----------------------------------hcCc--------eeEEEEECC
Confidence            589999999999999664222211                                   1111        236888888


Q ss_pred             CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE------eHHHHHhhhccCCCcEEEEcccCceeeecCCCCCC
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS------SISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGF  236 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via------St~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~  236 (330)
                      ++.-++-|..---.|| |-..+ .+.+ ....|...|+.      |-+++   ||+.|=.-|+|+..|+.|.+=.+|+- 
T Consensus       156 ~S~~vl~c~g~h~~IK-pL~~n-~k~i-~WkAHDGiiL~~~W~~~s~lI~---sgGED~kfKvWD~~G~~Lf~S~~~ey-  228 (737)
T KOG1524|consen  156 NSNSIVFCQGGHISIK-PLAAN-SKII-RWRAHDGLVLSLSWSTQSNIIA---SGGEDFRFKIWDAQGANLFTSAAEEY-  228 (737)
T ss_pred             CCCceEEecCCeEEEe-ecccc-ccee-EEeccCcEEEEeecCcccccee---ecCCceeEEeecccCcccccCChhcc-
Confidence            8877777764333444 34442 4444 35677776642      24555   99999999999999999999999988 


Q ss_pred             CCCcEEEeCCCccEEEEcc----------CCe--EEEEeeCCceeeeccCccc
Q psy682          237 ASPESVVMSREGVIVVNYE----------RGH--IAAFTMNGNRLRHESHNDN  277 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~----------~~~--~~~~s~nG~~las~~~~~d  277 (330)
                       ++.+|+|.|| +..+-++          -|+  -..||+||.+++..+..+.
T Consensus       229 -~ITSva~npd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  229 -AITSVAFNPE-KDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             -ceeeeeeccc-cceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCce
Confidence             9999999999 5444443          222  3689999999998876654

>KOG1517|consensus

Probab=98.58  E-value=9.1e-07  Score=94.91  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=81.8

Q ss_pred             CCeEEEeeccCCeEEEeeecccc---cccccccCCCCc--EE-Ee------HHHHHhhhccCCCcEEEEcccCceee---
Q psy682          164 SRFLLACGFWDNSFREPFTTMYL---ALQEGKFDHPNR--LF-SS------ISLAWKNCQRDTSDVKVHTTFGDLLR---  228 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d~--Vi-aS------t~~lW~~SgS~Dgtvkl~~~~G~ll~---  228 (330)
                      |.. +++|+.|+++|+ ++....   .++.....|+++  |+ ++      -..+   |||.||.|++|+..+....   
T Consensus      1221 gn~-i~AGfaDGsvRv-yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv---Sgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1221 GNI-IAAGFADGSVRV-YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV---SGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             Cce-EEEeecCCceEE-eecccCCccccceeecccCCcccceeEEeecCCCccee---eeccCCeEEEEecccCcccccc
Confidence            444 888999999999 987532   367788889998  63 33      2233   9999999999998763322   


Q ss_pred             ecCCCCCCC-CCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCc
Q psy682          229 SLDPPSGFA-SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       229 tL~~h~~~~-~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~  275 (330)
                      ++..|-.++ .++++...++.-++|+|+.+.++.|+..|.+|.....+
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYN 1343 (1387)
T ss_pred             eeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccC
Confidence            233454333 48999999999999999889999999999999887633

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=4.6e-06  Score=83.67  Aligned_cols=202  Identities=11%  Similarity=-0.011  Sum_probs=110.5

Q ss_pred             eecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-
Q psy682           48 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        48 ~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      +.+.+.++..+|||||+.++..              ...+....+.+|+.+++..+.+....+    ....+.|||||+ 
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~--------------s~~~g~~~i~i~dl~~G~~~~l~~~~~----~~~~~~~SPDG~~  256 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYV--------------TFESGRSALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSK  256 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEE--------------EecCCCcEEEEEECCCCCeEEccCCCC----CcCCeEECCCCCE
Confidence            3455678899999999876322              112334568888887765444332211    234589999998 


Q ss_pred             eecc-CCCCCCCcceeccCCCCcccee---eeeeEEEEecCCCeEEEeeccCCeEEEee--ecccccccccccCCCCc--
Q psy682          127 LTHP-TSNNNAPVPKRHLGDNFSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPF--TTMYLALQEGKFDHPNR--  198 (330)
Q Consensus       127 l~~~-s~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w--~~~~g~l~~~l~gH~d~--  198 (330)
                      ++.. +.++...++.+.+...-.+.+.   .......++|||+.|+.++..++..++ |  ++++|+..+ +..+...  
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~I-y~~d~~~g~~~~-lt~~~~~~~  334 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQV-YKVNINGGAPQR-ITWEGSQNQ  334 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceE-EEEECCCCCeEE-eecCCCCcc
Confidence            4432 2222223443433211111111   112467799999997666544556677 6  455454332 2222111  


Q ss_pred             --EEEe--HHHHHhhhccCC--CcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-C---CeEEEEeeCCce
Q psy682          199 --LFSS--ISLAWKNCQRDT--SDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R---GHIAAFTMNGNR  268 (330)
Q Consensus       199 --ViaS--t~~lW~~SgS~D--gtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~---~~~~~~s~nG~~  268 (330)
                        .+..  ..++.  .+..+  ..|.+|+..+...+.|... .  .....+|||||+.|+.++ +   ..+.+++.||+.
T Consensus       335 ~~~~SpDG~~Ia~--~~~~~g~~~I~~~dl~~g~~~~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        335 DADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQVLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CEEECCCCCEEEE--EEccCCCceEEEEECCCCCeEEeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence              1221  11110  22222  3456677655556666642 1  346788999999998874 2   237777888987


Q ss_pred             eeeccC
Q psy682          269 LRHESH  274 (330)
Q Consensus       269 las~~~  274 (330)
                      ...+..
T Consensus       410 ~~~l~~  415 (429)
T PRK03629        410 KARLPA  415 (429)
T ss_pred             eEECcc
Confidence            776653

>KOG0974|consensus

Probab=98.55  E-value=1.7e-07  Score=99.96  Aligned_cols=183  Identities=15%  Similarity=0.167  Sum_probs=121.3

Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCC-CCCCCccccCCCc-eeccCCCCCCCcceeccC-CCCccceeeeee-
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPG-SPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG-DNFSQKLRVRHN-  156 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~-~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~-~~~~~~~~~~~~-  156 (330)
                      +++++++..  +-+|+....-+-+-.++.+... ....-.-++++.. +++  +..-..++.|..- +.-+-.+.+|.. 
T Consensus       102 i~l~~~~ns--~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~--gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen  102 IALVTSRNS--LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS--GSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             EEEEEcCce--EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe--ccccccEEEEeccccCCcceecccCCc
Confidence            345555554  4555554444333333432111 1111233466666 333  2222233344432 211113555553 


Q ss_pred             --EEEEecCCCeEEEeeccCCeEEEeeecccccccc-cccCCCCcEEE----eHHHHHhhhccCCCcEEEEcccCceeee
Q psy682          157 --CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE-GKFDHPNRLFS----SISLAWKNCQRDTSDVKVHTTFGDLLRS  229 (330)
Q Consensus       157 --~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~-~l~gH~d~Via----St~~lW~~SgS~Dgtvkl~~~~G~ll~t  229 (330)
                        .+.++-||++ +++-|.|+++|+ |.+++++... +.+||+.+|..    ...++   +++.|-||++|+.+|..|.+
T Consensus       178 iF~i~~s~dg~~-i~s~SdDRsiRl-W~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~---t~gedctcrvW~~~~~~l~~  252 (967)
T KOG0974|consen  178 IFSIVTSLDGRY-IASVSDDRSIRL-WPIDSREVLGCTGFGHSARVWACCFLPNRII---TVGEDCTCRVWGVNGTQLEV  252 (967)
T ss_pred             eEEEEEccCCcE-EEEEecCcceee-eecccccccCcccccccceeEEEEeccceeE---EeccceEEEEEecccceehh
Confidence              4556889999 555568999999 9999998766 99999999832    22222   89999999999999999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeecc
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~  273 (330)
                      +++|.+ ..+..++..++-.+++++ .|+.+.+|..+|+.+....
T Consensus       253 y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~  296 (967)
T KOG0974|consen  253 YDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHV  296 (967)
T ss_pred             hhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhccccccce
Confidence            999998 489999999999998888 5889999999999875443

>KOG1034|consensus

Probab=98.54  E-value=1.3e-06  Score=83.90  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=80.3

Q ss_pred             CCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--E---eHHHHHhhhccCCCcEEEEcc-cCceeeec---CC
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--S---SISLAWKNCQRDTSDVKVHTT-FGDLLRSL---DP  232 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--a---St~~lW~~SgS~Dgtvkl~~~-~G~ll~tL---~~  232 (330)
                      ..+++++| .-+-||+ .+..++++.+.+.||.+.|  |  -   +...|   |||+|.+||||+. ++..+--|   +|
T Consensus       105 ~p~la~~G-~~GvIrV-id~~~~~~~~~~~ghG~sINeik~~p~~~qlvl---s~SkD~svRlwnI~~~~Cv~VfGG~eg  179 (385)
T KOG1034|consen  105 NPFLAAGG-YLGVIRV-IDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVL---SASKDHSVRLWNIQTDVCVAVFGGVEG  179 (385)
T ss_pred             CeeEEeec-ceeEEEE-EecchhhhccceeccCccchhhhcCCCCCcEEE---EecCCceEEEEeccCCeEEEEeccccc
Confidence            34656655 6999999 9999999999999999988  2  2   24555   9999999999986 56776654   56


Q ss_pred             CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          233 PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      |.+  .|-+|.||+||..|+|++ |.+|.+|.+|-+
T Consensus       180 Hrd--eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  180 HRD--EVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             ccC--cEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            777  999999999999999998 889999998844

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.50  E-value=7.6e-07  Score=80.21  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=26.5

Q ss_pred             eEEEEecCCCeEEEeecc-----CCeEEEeeecccccccc
Q psy682          156 NCFVTTVDSRFLLACGFW-----DNSFREPFTTMYLALQE  190 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~-----D~tirl~w~~~~g~l~~  190 (330)
                      ..++++|||++++++.+.     |+.++| |+.. |+++.
T Consensus       147 t~~~WsPdGr~~~ta~t~~r~~~dng~~I-w~~~-G~~l~  184 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATTSPRLRVDNGFKI-WSFQ-GRLLY  184 (194)
T ss_pred             EEEEEcCCCCEEEEEEeccceeccccEEE-EEec-CeEeE
Confidence            577899999998888764     888999 9984 77643

>KOG1786|consensus

Probab=98.46  E-value=4.7e-08  Score=107.81  Aligned_cols=56  Identities=38%  Similarity=0.677  Sum_probs=53.4

Q ss_pred             ccccccccccccchhhhhcccCCCccccccCCcccCceecCCCCC-CHHHHHHHhcC
Q psy682          275 NDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWAS-SPEQFVRINRM  330 (330)
Q Consensus       275 ~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~wa~-s~~~fi~~~r~  330 (330)
                      +.+|+|||||||+.|+||.|.+.+++|++++|..++||.||+||. +|++||+.||+
T Consensus       485 ~~~i~eli~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~  541 (1081)
T KOG1786|consen  485 HSCIKELIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRK  541 (1081)
T ss_pred             chhHHHHHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999999 69999999984

>KOG1445|consensus

Probab=98.43  E-value=3.1e-07  Score=94.10  Aligned_cols=138  Identities=18%  Similarity=0.236  Sum_probs=86.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |-|.+||.|+||++..+-+-                 ...+.|...++.|.++|.++.|+|=..=               
T Consensus       644 AVa~ddg~i~lWr~~a~gl~-----------------e~~~tPe~~lt~h~eKI~slRfHPLAad---------------  691 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLP-----------------ENEMTPEKILTIHGEKITSLRFHPLAAD---------------  691 (1012)
T ss_pred             eecccCceEEEEEeccCCCC-----------------cccCCcceeeecccceEEEEEecchhhh---------------
Confidence            45789999999998653321                 1122344455566666666666664332               


Q ss_pred             EEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcc-eeccCCCCcc---ceeee
Q psy682           81 VVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVP-KRHLGDNFSQ---KLRVR  154 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~-~~~l~~~~~~---~~~~~  154 (330)
                       ++++++.|.||+||+...... ..+.||+    +..+.++.||||+ +|+.+.++...+. .|.-..+..+   -+..+
T Consensus       692 -vLa~asyd~Ti~lWDl~~~~~~~~l~gHt----dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  692 -VLAVASYDSTIELWDLANAKLYSRLVGHT----DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             -HhhhhhccceeeeeehhhhhhhheeccCc----CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence             468999999999999876554 4455998    5788899999999 6654444433222 1111111110   01122


Q ss_pred             eeEEEEecCCCeEEEeeccCCe
Q psy682          155 HNCFVTTVDSRFLLACGFWDNS  176 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~t  176 (330)
                      ...+.+..||++++++|+ |+.
T Consensus       767 gARi~wacdgr~viv~Gf-dk~  787 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVGF-DKS  787 (1012)
T ss_pred             ceeEEEEecCcEEEEecc-ccc
Confidence            346778899999999995 654

>KOG1524|consensus

Probab=98.42  E-value=1.3e-06  Score=88.29  Aligned_cols=144  Identities=14%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------Ccce------eeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------SPMM------FSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------~~l~------~~~~~~d~~~~v~Fs~~~   63 (330)
                      +|+++||.||+|.. +|-+..++--....|.++++-|+..-           .||.      -...|+..|.++..+|.+
T Consensus       120 lt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s  198 (737)
T KOG1524|consen  120 LTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS  198 (737)
T ss_pred             eeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence            47899999999966 78888899999999999999998766           3332      134888899999999999


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  143 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l  143 (330)
                      .+|                 +|++.|+.-|+|+..|..+-++.-|..    +..+++|-||-.++..|.+.   . +  +
T Consensus       199 ~lI-----------------~sgGED~kfKvWD~~G~~Lf~S~~~ey----~ITSva~npd~~~~v~S~nt---~-R--~  251 (737)
T KOG1524|consen  199 NII-----------------ASGGEDFRFKIWDAQGANLFTSAAEEY----AITSVAFNPEKDYLLWSYNT---A-R--F  251 (737)
T ss_pred             cce-----------------eecCCceeEEeecccCcccccCChhcc----ceeeeeeccccceeeeeeee---e-e--e
Confidence            875                 999999999999999998888887764    67789999995577422211   1 1  2


Q ss_pred             CCCCccceeeeeeEEEEecCCCeEEEeeccCCeE
Q psy682          144 GDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSF  177 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~ti  177 (330)
                      ..|    -.+....++.|+||.. ++||-..+-+
T Consensus       252 ~~p----~~GSifnlsWS~DGTQ-~a~gt~~G~v  280 (737)
T KOG1524|consen  252 SSP----RVGSIFNLSWSADGTQ-ATCGTSTGQL  280 (737)
T ss_pred             cCC----CccceEEEEEcCCCce-eeccccCceE
Confidence            221    2233356778999988 8888666644

>KOG1538|consensus

Probab=98.40  E-value=7.1e-07  Score=92.00  Aligned_cols=189  Identities=13%  Similarity=0.161  Sum_probs=117.8

Q ss_pred             EEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCC-cceeccCCCCccceeeee----
Q psy682           82 VTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP-VPKRHLGDNFSQKLRVRH----  155 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~-~~~~~l~~~~~~~~~~~~----  155 (330)
                      +.|.+++   +-+++++ |+.+.++.||.    +-+++++.+.||+..+  +|++++ ++.|.-  .+...++...    
T Consensus        28 ~lAAg~r---lliyD~ndG~llqtLKgHK----DtVycVAys~dGkrFA--SG~aDK~VI~W~~--klEG~LkYSH~D~I   96 (1081)
T KOG1538|consen   28 ILAAGSR---LLVYDTSDGTLLQPLKGHK----DTVYCVAYAKDGKRFA--SGSADKSVIIWTS--KLEGILKYSHNDAI   96 (1081)
T ss_pred             EEecCCE---EEEEeCCCccccccccccc----ceEEEEEEccCCceec--cCCCceeEEEecc--cccceeeeccCCee
Confidence            3454444   4788876 45556666997    5788999999999442  333333 344431  1122233332    


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC--cEEE-e-----HHHHHhhhccCCCcEEEEcccCcee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN--RLFS-S-----ISLAWKNCQRDTSDVKVHTTFGDLL  227 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d--~Via-S-----t~~lW~~SgS~Dgtvkl~~~~G~ll  227 (330)
                      .|..|.|=.+.+++|+-.|  +-+ |+.+....+    -|..  +|+. |     +..+   =|=.||||-|-+.+|+.-
T Consensus        97 QCMsFNP~~h~LasCsLsd--Fgl-WS~~qK~V~----K~kss~R~~~CsWtnDGqyla---lG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSD--FGL-WSPEQKSVS----KHKSSSRIICCSWTNDGQYLA---LGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eEeecCchHHHhhhcchhh--ccc-cChhhhhHH----hhhhheeEEEeeecCCCcEEE---EeccCceEEeecCCCCcc
Confidence            5999999999988887544  567 998743332    2222  2322 1     2222   467789999988888776


Q ss_pred             eecCCCCCC-CCCcEEEeCCCc-----cEEEEcc-CCeEEEEeeCCceeeec-cCccccccccccccchhhhhc
Q psy682          228 RSLDPPSGF-ASPESVVMSREG-----VIVVNYE-RGHIAAFTMNGNRLRHE-SHNDNLQELIPELFFLPEMLV  293 (330)
Q Consensus       228 ~tL~~h~~~-~~v~~v~fS~dG-----~~l~s~~-~~~~~~~s~nG~~las~-~~~~dVkELipef~~~p~~l~  293 (330)
                      -.+.-|.+. .+|++|+|+|..     .+++-.+ ..++..|+.+|+.+... ...  +--+.-.+|...||++
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~--FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALN--FDPCCISYFTNGEYIL  238 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCC--CCchhheeccCCcEEE
Confidence            666654442 489999999873     2566666 67899999999999743 333  2223335666667554

>KOG1445|consensus

Probab=98.40  E-value=4e-07  Score=93.37  Aligned_cols=90  Identities=13%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             CCCeEEEeeccCCeEEEeeeccccc-------ccccccCCCCcE-------EEeHHHHHhhhccCCCcEEEEcc-cCcee
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLA-------LQEGKFDHPNRL-------FSSISLAWKNCQRDTSDVKVHTT-FGDLL  227 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~-------l~~~l~gH~d~V-------iaSt~~lW~~SgS~Dgtvkl~~~-~G~ll  227 (330)
                      |-+.|+++ ..|+-||| |.+..+-       ....|.+|.+.|       +|+-+.+   ++|.|-||+||++ ++++.
T Consensus       639 D~~rLAVa-~ddg~i~l-Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa---~asyd~Ti~lWDl~~~~~~  713 (1012)
T KOG1445|consen  639 DDERLAVA-TDDGQINL-WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLA---VASYDSTIELWDLANAKLY  713 (1012)
T ss_pred             ChHHeeec-ccCceEEE-EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhh---hhhccceeeeeehhhhhhh
Confidence            34454444 47999999 9997653       466788898888       3456777   9999999999986 78999


Q ss_pred             eecCCCCCCCCCcEEEeCCCccEEEEcc-CCeE
Q psy682          228 RSLDPPSGFASPESVVMSREGVIVVNYE-RGHI  259 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~  259 (330)
                      ..|.||.+  .|..+++||||+.+|+.. |+++
T Consensus       714 ~~l~gHtd--qIf~~AWSpdGr~~AtVcKDg~~  744 (1012)
T KOG1445|consen  714 SRLVGHTD--QIFGIAWSPDGRRIATVCKDGTL  744 (1012)
T ss_pred             heeccCcC--ceeEEEECCCCcceeeeecCceE
Confidence            99999999  999999999999999974 4443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=3.5e-05  Score=77.54  Aligned_cols=203  Identities=9%  Similarity=0.061  Sum_probs=101.5

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee---ec-------------------CccEEEEEeCCCCCe
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST---VL-------------------DDVCMSLKFPSNSPI   65 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~---~~-------------------~d~~~~v~Fs~~~~v   65 (330)
                      .|.+.+. +|...+.|......+.+-+|||||+.-.+.+.+   +.                   .......+|||||+.
T Consensus       166 ~l~~~d~-dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDY-DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcC-CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            4555555 455556676677778899999999741111111   10                   111233456677665


Q ss_pred             eEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC---CcccCC-CCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcc
Q psy682           66 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA---ASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVP  139 (330)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~  139 (330)
                      |+....            ..++.+.-+..|+...+   ..++.. ++.    .......|||||+ ++..+. ++...++
T Consensus       245 Laf~s~------------~~g~~di~~~~~~~~~g~~g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        245 LAFISD------------RYGNPDLFIQSFSLETGAIGKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             EEEEEC------------CCCCcceeEEEeecccCCCCcceEeecCCC----CCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            533321            01222444555665432   222222 111    1234679999998 554222 2222233


Q ss_pred             eeccC--CCCccceee---eeeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcEEEeHHHHHhhhcc
Q psy682          140 KRHLG--DNFSQKLRV---RHNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQR  212 (330)
Q Consensus       140 ~~~l~--~~~~~~~~~---~~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS  212 (330)
                      ...+.  +.-.+.+..   .....++||||+.|+.++..++  .|.+ |++++|+..                       
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v-~dl~~g~~~-----------------------  364 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICV-YDLATGRDY-----------------------  364 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEE-EECCCCCeE-----------------------
Confidence            33221  100111111   1235678999998776654333  3555 666544432                       


Q ss_pred             CCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc----cCCeEEEEeeCCcee
Q psy682          213 DTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY----ERGHIAAFTMNGNRL  269 (330)
Q Consensus       213 ~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~----~~~~~~~~s~nG~~l  269 (330)
                                      .|.....  .+...+|||||+.|+..    +...+..+..+|...
T Consensus       365 ----------------~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        365 ----------------QLTTSPE--NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             ----------------EccCCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence                            1111111  45678999999987753    234566667666543

>KOG2111|consensus

Probab=98.40  E-value=1.8e-05  Score=75.71  Aligned_cols=93  Identities=14%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             eEEEEecCCCeEEEeeccCCe-EEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNS-FREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS  234 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~t-irl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~  234 (330)
                      .|++.+-||.. +|++|..+| ||+ |+.++|.+++.+..-.|                                     
T Consensus       185 acv~Ln~~Gt~-vATaStkGTLIRI-Fdt~~g~~l~E~RRG~d-------------------------------------  225 (346)
T KOG2111|consen  185 ACVALNLQGTL-VATASTKGTLIRI-FDTEDGTLLQELRRGVD-------------------------------------  225 (346)
T ss_pred             eEEEEcCCccE-EEEeccCcEEEEE-EEcCCCcEeeeeecCCc-------------------------------------
Confidence            58999999966 777888888 599 99998888776643222                                     


Q ss_pred             CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeec--cCccccccccccccch
Q psy682          235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHE--SHNDNLQELIPELFFL  288 (330)
Q Consensus       235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~--~~~~dVkELipef~~~  288 (330)
                       ...+++++||||++.||.+ +++++|.|.+.+..+...  +.....+-.+|.++.-
T Consensus       226 -~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S  281 (346)
T KOG2111|consen  226 -RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSS  281 (346)
T ss_pred             -hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhccc
Confidence             1269999999999999887 599999999877554433  2222233344555443

>KOG2055|consensus

Probab=98.38  E-value=5.1e-06  Score=82.62  Aligned_cols=186  Identities=12%  Similarity=0.106  Sum_probs=116.0

Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccC
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPT  131 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s  131 (330)
                      .+...+.||++++|                 |.++..+-|+|-.....++.++..-.+    .+..+.|+.|++ +.+  
T Consensus       305 ~~e~FeVShd~~fi-----------------a~~G~~G~I~lLhakT~eli~s~KieG----~v~~~~fsSdsk~l~~--  361 (514)
T KOG2055|consen  305 SMERFEVSHDSNFI-----------------AIAGNNGHIHLLHAKTKELITSFKIEG----VVSDFTFSSDSKELLA--  361 (514)
T ss_pred             hhheeEecCCCCeE-----------------EEcccCceEEeehhhhhhhhheeeecc----EEeeEEEecCCcEEEE--
Confidence            45667778888865                 777888889999888888777654443    355699999999 443  


Q ss_pred             CCCCCCcceeccCCCCcc-----ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccc------cccccccCCCCcE-
Q psy682          132 SNNNAPVPKRHLGDNFSQ-----KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYL------ALQEGKFDHPNRL-  199 (330)
Q Consensus       132 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g------~l~~~l~gH~d~V-  199 (330)
                      ++++..++.+.++.+.-.     .-.++..+++.|++|+| +|+||--+-+.| ++.++-      +++.++-.=...| 
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-lA~GS~~GiVNI-Yd~~s~~~s~~PkPik~~dNLtt~It  439 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-LATGSDSGIVNI-YDGNSCFASTNPKPIKTVDNLTTAIT  439 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-EEeccCcceEEE-eccchhhccCCCCchhhhhhhheeee
Confidence            334446777777554211     11123356779999998 899987777788 886431      2222221111111 


Q ss_pred             ---EEe--HHHHHhhhccCCCcEEE-EcccCceeeecCCCCC-CCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682          200 ---FSS--ISLAWKNCQRDTSDVKV-HTTFGDLLRSLDPPSG-FASPESVVMSREGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       200 ---iaS--t~~lW~~SgS~Dgtvkl-~~~~G~ll~tL~~h~~-~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~  264 (330)
                         |..  .+++-- |--.+.++|| |-..-...+-+..... -+.|++++|||.|-.+|-| .++++++|-+
T Consensus       440 sl~Fn~d~qiLAia-S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  440 SLQFNHDAQILAIA-SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             eeeeCcchhhhhhh-hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence               211  221111 5556778888 6543333332222211 1479999999999999999 5888998864

>KOG1007|consensus

Probab=98.37  E-value=6.7e-06  Score=78.03  Aligned_cols=218  Identities=15%  Similarity=0.070  Sum_probs=127.1

Q ss_pred             CCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCc--C----------------------ccee-----------
Q psy682            5 DKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKY--S----------------------PMMF-----------   46 (330)
Q Consensus         5 ~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~--~----------------------~l~~-----------   46 (330)
                      .|+.|.+-++..+.   +-++|..|.+.||.+|=+|-.+.  +                      ++..           
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            46788888776533   33568999999999999996655  0                      0000           


Q ss_pred             ee-ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-------CCCCCCCCCCCCC
Q psy682           47 ST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-------PSYAETPGSPPGN  118 (330)
Q Consensus        47 ~~-~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-------~~h~~~~~~~~~~  118 (330)
                      +. .+-..+..|.|-||+.-+                 ++.. +..|-+|+++....+..       .+|.    ..-.+
T Consensus       118 Ldteavg~i~cvew~Pns~kl-----------------asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~----~~fts  175 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKL-----------------ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR----HSFTS  175 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCee-----------------EEec-cCceEEEEcccCcchheeeccccccccc----ceecc
Confidence            00 111134455566665543                 4433 55588999865432111       1111    01111


Q ss_pred             ccccC--CCceeccCCCCCCCcceeccCCCCccceee---e---eeEEEEecCCCeEEEeeccCCeEEEeeecccc-ccc
Q psy682          119 LPLTL--DPILTHPTSNNNAPVPKRHLGDNFSQKLRV---R---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL-ALQ  189 (330)
Q Consensus       119 l~fs~--D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~---~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g-~l~  189 (330)
                      =+-||  |+.....++++  .++-+.+. .+.+...+   |   ...+.|.|+-|++++++.-|+-+|+ |++..- ..+
T Consensus       176 g~WspHHdgnqv~tt~d~--tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvri-WD~R~tk~pv  251 (370)
T KOG1007|consen  176 GAWSPHHDGNQVATTSDS--TLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRI-WDTRKTKFPV  251 (370)
T ss_pred             cccCCCCccceEEEeCCC--cEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEE-EeccCCCccc
Confidence            22233  55522212222  23333332 12221111   1   2466789999999999989999999 998643 479


Q ss_pred             ccccCCCCcE----EEe---HHHHHhhhccCCCcEEEEcc------------------------------cCceeeecCC
Q psy682          190 EGKFDHPNRL----FSS---ISLAWKNCQRDTSDVKVHTT------------------------------FGDLLRSLDP  232 (330)
Q Consensus       190 ~~l~gH~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~------------------------------~G~ll~tL~~  232 (330)
                      +.+.+|+-+|    +-.   ..+|   |||.|-.|.||..                              ...+|.++..
T Consensus       252 ~el~~HsHWvW~VRfn~~hdqLiL---s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde  328 (370)
T KOG1007|consen  252 QELPGHSHWVWAVRFNPEHDQLIL---SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE  328 (370)
T ss_pred             cccCCCceEEEEEEecCccceEEE---ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence            9999999998    222   5555   8888888888741                              1223557888


Q ss_pred             CCCCCCCcEEEeCCC-ccEEEE
Q psy682          233 PSGFASPESVVMSRE-GVIVVN  253 (330)
Q Consensus       233 h~~~~~v~~v~fS~d-G~~l~s  253 (330)
                      |++  +|+++++|.- ==+.||
T Consensus       329 hED--SVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  329 HED--SVYALAWSSADPWIFAS  348 (370)
T ss_pred             ccc--ceEEEeeccCCCeeEEE
Confidence            999  8999998843 334444

>KOG2110|consensus

Probab=98.36  E-value=2e-06  Score=83.43  Aligned_cols=100  Identities=19%  Similarity=0.172  Sum_probs=73.7

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTV   84 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~v   84 (330)
                      +.|.|.|||..+-+...++.+|.+.+-++||||||.+                                         +|
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~l-----------------------------------------lA  189 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTL-----------------------------------------LA  189 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCE-----------------------------------------EE
Confidence            4588999999999999999999999999999999999                                         47


Q ss_pred             EcCCcceE-EEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecC
Q psy682           85 TANHQFAI-NRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVD  163 (330)
Q Consensus        85 S~~~~~tv-~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spD  163 (330)
                      ||+..+|| +....                         |+|+..-        ..+|..       ...+-.+++|+||
T Consensus       190 TASeKGTVIRVf~v-------------------------~~G~kl~--------eFRRG~-------~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  190 TASEKGTVIRVFSV-------------------------PEGQKLY--------EFRRGT-------YPVSIYSLSFSPD  229 (391)
T ss_pred             EeccCceEEEEEEc-------------------------CCccEee--------eeeCCc-------eeeEEEEEEECCC
Confidence            77777765 44443                         3334321        334442       2344567779999


Q ss_pred             CCeEEEeeccCCeEEEeeeccccc
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLA  187 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~  187 (330)
                      +++ ++|.+.-+||-+ |.+++-.
T Consensus       230 s~~-L~~sS~TeTVHi-FKL~~~~  251 (391)
T KOG2110|consen  230 SQF-LAASSNTETVHI-FKLEKVS  251 (391)
T ss_pred             CCe-EEEecCCCeEEE-EEecccc
Confidence            999 455557899999 9987433

>KOG0644|consensus

Probab=98.34  E-value=6.2e-07  Score=94.25  Aligned_cols=100  Identities=13%  Similarity=0.194  Sum_probs=86.7

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee---HHHHHhhhccCCCcEEEEc-ccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS---ISLAWKNCQRDTSDVKVHT-TFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS---t~~lW~~SgS~Dgtvkl~~-~~G~ll~  228 (330)
                      .|.+|---|++| .+||-|.-+|| |+.+++.+.....||+..+  . ++   +.++   +||.|..|++|- .+|.++.
T Consensus       194 yca~fDrtg~~I-itgsdd~lvKi-wS~et~~~lAs~rGhs~ditdlavs~~n~~ia---aaS~D~vIrvWrl~~~~pvs  268 (1113)
T KOG0644|consen  194 YCAIFDRTGRYI-ITGSDDRLVKI-WSMETARCLASCRGHSGDITDLAVSSNNTMIA---AASNDKVIRVWRLPDGAPVS  268 (1113)
T ss_pred             eeeeeccccceE-eecCccceeee-eeccchhhhccCCCCccccchhccchhhhhhh---hcccCceEEEEecCCCchHH
Confidence            588898899995 46889999999 9999999999999999998  2 23   6666   999999999995 5899999


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                      .|.||++  .|++|+|||--   .++++|++..|.-+
T Consensus       269 vLrghtg--avtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  269 VLRGHTG--AVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHhcccc--ceeeeccCccc---cCCCCCceEecccc
Confidence            9999999  99999999975   56679998888755

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=2.7e-05  Score=78.03  Aligned_cols=121  Identities=9%  Similarity=-0.015  Sum_probs=69.9

Q ss_pred             eeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc
Q psy682           47 STVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI  126 (330)
Q Consensus        47 ~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~  126 (330)
                      .+.+...++..+|||||+.|+..+              ..+.+..|.+|+..++.......+.+    .+....|+|||+
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s--------------~~~g~~~i~~~dl~~g~~~~l~~~~g----~~~~~~~SPDG~  258 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMS--------------YANGRPRVYLLDLETGQRELVGNFPG----MTFAPRFSPDGR  258 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEE--------------ecCCCCEEEEEECCCCcEEEeecCCC----cccCcEECCCCC
Confidence            456677899999999999763321              12345679999998776555544432    455789999998


Q ss_pred             -eecc-CCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCe--EEEeeecccc
Q psy682          127 -LTHP-TSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNS--FREPFTTMYL  186 (330)
Q Consensus       127 -l~~~-s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~t--irl~w~~~~g  186 (330)
                       ++.. +.++...++...+...-.+.+..+   ....+++|||+.|+.+...++.  |.+ |+++++
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~-~d~~g~  324 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV-MNADGS  324 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE-EECCCC
Confidence             4432 233333344333322111112211   2356789999986655433433  444 555433

>KOG1188|consensus

Probab=98.29  E-value=4.6e-06  Score=80.41  Aligned_cols=216  Identities=14%  Similarity=0.116  Sum_probs=127.5

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      +=.+|+|||++..+|+.+..|++|...++.|+|..+.                       +|-                .
T Consensus        46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-----------------------s~h----------------~   86 (376)
T KOG1188|consen   46 SLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-----------------------SPH----------------G   86 (376)
T ss_pred             EecCCeEEEEeccchhhhheecCCCCcccceEEecCC-----------------------CCC----------------e
Confidence            3467999999999999999999999999999997742                       111                2


Q ss_pred             EEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccC----CCCCCCcceeccCC-CCccceee
Q psy682           83 TVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPT----SNNNAPVPKRHLGD-NFSQKLRV  153 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s----~~~~~~~~~~~l~~-~~~~~~~~  153 (330)
                      ..|++.|++||+|+.....   .+...+|.   ..+-.+|..--... ++..+    ++.....|.++-.. ++.+-.+-
T Consensus        87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS  163 (376)
T KOG1188|consen   87 VISCSSDGTVRLWDIRSQAESARISWTQQS---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES  163 (376)
T ss_pred             eEEeccCCeEEEEEeecchhhhheeccCCC---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence            4778889999999985332   12222332   12223444432222 33211    11111122222111 12222233


Q ss_pred             ee---eEEEEecCCCeEEEeeccCCeEEEeeecccc----cccccccCCCCcE------------E--Ee---HHHHHhh
Q psy682          154 RH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL----ALQEGKFDHPNRL------------F--SS---ISLAWKN  209 (330)
Q Consensus       154 ~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g----~l~~~l~gH~d~V------------i--aS---t~~lW~~  209 (330)
                      |.   .++.|.|...-++.+||.|+-+-| |+++.-    -|+++ +.|...|            |  .+   +..+|++
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnl-fD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNL-FDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEe-eecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            33   478899987778999999999999 998532    13433 3454444            1  12   4444554


Q ss_pred             --------------------------------hccC----------CCcEEEE--c--ccC---ceeeecCC-CCCCCCC
Q psy682          210 --------------------------------CQRD----------TSDVKVH--T--TFG---DLLRSLDP-PSGFASP  239 (330)
Q Consensus       210 --------------------------------SgS~----------Dgtvkl~--~--~~G---~ll~tL~~-h~~~~~v  239 (330)
                                                      +-+.          -|+..++  .  ..|   +.+..|.| |..  .|
T Consensus       242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e--iV  319 (376)
T KOG1188|consen  242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE--IV  319 (376)
T ss_pred             cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH--HH
Confidence                                            2222          2222232  1  223   33344555 444  89


Q ss_pred             cEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          240 ESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       240 ~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      +++.|-..+..+.+|+ ++.+..|-.
T Consensus       320 R~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  320 RDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             HHHhhhcccceeeccCCCceEEEEec
Confidence            9999998899999986 889999973

>KOG1009|consensus

Probab=98.29  E-value=7.4e-06  Score=80.40  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=109.2

Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--e
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--L  127 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l  127 (330)
                      .-+.++++-|..|+.=                .++||+.|.-|++|..+..+-.+.                  |++  +
T Consensus        12 ~~~pv~s~dfq~n~~~----------------~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y   57 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLN----------------KLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEY   57 (434)
T ss_pred             CCCceEEEEeccCccc----------------ceecccCccceeeeeeeecCCCCC------------------ceeEEE
Confidence            4457888888888772                259999999999999865421110                  011  1


Q ss_pred             eccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecc--------c--------cccccc
Q psy682          128 THPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTM--------Y--------LALQEG  191 (330)
Q Consensus       128 ~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~--------~--------g~l~~~  191 (330)
                      ++        ...++-         .-.|++.|+|+|.. +|+|..++.+-+ |...        +        ......
T Consensus        58 ~s--------~Ls~H~---------~aVN~vRf~p~gel-LASg~D~g~v~l-Wk~~~~~~~~~d~e~~~~ke~w~v~k~  118 (434)
T KOG1009|consen   58 LS--------SLSRHT---------RAVNVVRFSPDGEL-LASGGDGGEVFL-WKQGDVRIFDADTEADLNKEKWVVKKV  118 (434)
T ss_pred             ee--------cccCCc---------ceeEEEEEcCCcCe-eeecCCCceEEE-EEecCcCCccccchhhhCccceEEEEE
Confidence            11        111111         12378999999988 677778888998 9875        1        223455


Q ss_pred             ccCCCCcEEEeHHHHHhh------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          192 KFDHPNRLFSSISLAWKN------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       192 l~gH~d~ViaSt~~lW~~------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      +.+|.+-|.   -..|..      +||.|.++++|+. .|+++..+.+|+.  -|..|++-|.+|.+++=+ +.....|+
T Consensus       119 lr~h~~diy---dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~--yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  119 LRGHRDDIY---DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH--YVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             ecccccchh---hhhccCCCceeeeeeccceEEEEEeccceeEeecccccc--ccceeecchhhhhhhhhccCcccceee
Confidence            666666542   122322      9999999999987 7999999999998  899999999999999864 33355555


Q ss_pred             eCCc
Q psy682          264 MNGN  267 (330)
Q Consensus       264 ~nG~  267 (330)
                      .+=+
T Consensus       194 ~~~~  197 (434)
T KOG1009|consen  194 AKLK  197 (434)
T ss_pred             eeee
Confidence            4433

>KOG0307|consensus

Probab=98.27  E-value=2.1e-06  Score=92.55  Aligned_cols=177  Identities=16%  Similarity=0.135  Sum_probs=116.7

Q ss_pred             CcccCCCcEEEeecccccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |||+.||+|-|||+++-+.-.++.  .-.+.|-+|+++-.-+.                                     
T Consensus       133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh-------------------------------------  175 (1049)
T KOG0307|consen  133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH-------------------------------------  175 (1049)
T ss_pred             eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH-------------------------------------
Confidence            799999999999998855544442  23455555555553333                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcc-eeccCC--CCcccee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVP-KRHLGD--NFSQKLR  152 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~-~~~l~~--~~~~~~~  152 (330)
                         |+||++.++.+-+|+........ +.-|..  +-....+...||..  +++++.+.....+ .|.++-  ...+.++
T Consensus       176 ---ILAS~s~sg~~~iWDlr~~~pii~ls~~~~--~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~  250 (1049)
T KOG0307|consen  176 ---ILASGSPSGRAVIWDLRKKKPIIKLSDTPG--RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE  250 (1049)
T ss_pred             ---HhhccCCCCCceeccccCCCcccccccCCC--ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc
Confidence               56889999889999987653222 222211  11244688889988  5553433333322 333221  1235666


Q ss_pred             eeee---EEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-------eHHHHHhhhccCCCcEEEEc
Q psy682          153 VRHN---CFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-------SISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       153 ~~~~---~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-------St~~lW~~SgS~Dgtvkl~~  221 (330)
                      +|..   ++...+ |..++++|| .|+.|-+ |+.++|+.+..+-.-.++++-       +-+..   .+|-||+|-|++
T Consensus       251 ~H~~GilslsWc~~D~~lllSsg-kD~~ii~-wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A---~asfdgkI~I~s  325 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSG-KDNRIIC-WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMA---AASFDGKISIYS  325 (1049)
T ss_pred             ccccceeeeccCCCCchhhhccc-CCCCeeE-ecCCCceEeeecCCCCcceeeeeecCCCcchhh---hheeccceeeee
Confidence            7763   444444 668888888 8999999 999999999999888888742       13444   789999999998


Q ss_pred             ccC
Q psy682          222 TFG  224 (330)
Q Consensus       222 ~~G  224 (330)
                      +.|
T Consensus       326 l~~  328 (1049)
T KOG0307|consen  326 LQG  328 (1049)
T ss_pred             eec
Confidence            754

>KOG0302|consensus

Probab=98.26  E-value=4.3e-06  Score=81.55  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=82.6

Q ss_pred             CcccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      +||+--+.|+||+..+|.   -...|.||...|.++..||.-..                                    
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~------------------------------------  271 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG------------------------------------  271 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc------------------------------------
Confidence            367777899999998865   23347889999999999996444                                    


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcc-eeccCCCCc----
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVP-KRHLGDNFS----  148 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~-~~~l~~~~~----  148 (330)
                          +.+||+-|++|++|+.....   ......|.+    -++-+++.-+-. |+   +|++++.+ .|.|...-.    
T Consensus       272 ----vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s----DVNVISWnr~~~lLa---sG~DdGt~~iwDLR~~~~~~pV  340 (440)
T KOG0302|consen  272 ----VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS----DVNVISWNRREPLLA---SGGDDGTLSIWDLRQFKSGQPV  340 (440)
T ss_pred             ----eEEeeecCceEEEEEecCCCccceeEeeccCC----ceeeEEccCCcceee---ecCCCceEEEEEhhhccCCCcc
Confidence                46999999999999985442   112234442    344555555544 33   34444433 333322111    


Q ss_pred             cceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          149 QKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       149 ~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      .+++.|.   .|+.++|.-..++++++.|+.|-+ |++.
T Consensus       341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti-WDls  378 (440)
T KOG0302|consen  341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI-WDLS  378 (440)
T ss_pred             eeEEeccCCeeEEEeccccCceEEeccCCCcEEE-EEee
Confidence            1333332   466677644444444556777777 7763

>KOG0771|consensus

Probab=98.23  E-value=9.7e-06  Score=79.64  Aligned_cols=94  Identities=20%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC-CC---------------cE--EEeHHHHHhhhccCCCcE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH-PN---------------RL--FSSISLAWKNCQRDTSDV  217 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH-~d---------------~V--iaSt~~lW~~SgS~Dgtv  217 (330)
                      .+..||||||+|++-| .| ..+| |++++|..++.+.+- .|               .+  ++++.        .-+-|
T Consensus       190 ~DL~FS~dgk~lasig-~d-~~~V-W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~--------~~~~v  258 (398)
T KOG0771|consen  190 KDLDFSPDGKFLASIG-AD-SARV-WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF--------PGGGV  258 (398)
T ss_pred             ccceeCCCCcEEEEec-CC-ceEE-EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecC--------CCCce
Confidence            4566888888755555 56 7788 888877555555521 11               11  22211        11112


Q ss_pred             EE-----Eccc--CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          218 KV-----HTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       218 kl-----~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      ++     |..+  +++.+.+..+.   .+++++.|+||+++|-|. ++.+..|.
T Consensus       259 ~~~~~~~w~~~~~l~~~~~~~~~~---siSsl~VS~dGkf~AlGT~dGsVai~~  309 (398)
T KOG0771|consen  259 RLCDISLWSGSNFLRLRKKIKRFK---SISSLAVSDDGKFLALGTMDGSVAIYD  309 (398)
T ss_pred             eEEEeeeeccccccchhhhhhccC---cceeEEEcCCCcEEEEeccCCcEEEEE
Confidence            22     3221  23333333332   699999999999999996 66655554

>KOG0322|consensus

Probab=98.19  E-value=6.1e-06  Score=77.42  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~  222 (330)
                      +-+.+-||+|. +|++.||+.||+ ++-.+++.+..|.=|.+.|    |.+  -+++   +||+|++|-||.+
T Consensus       255 ~gvrIRpD~KI-lATAGWD~RiRV-yswrtl~pLAVLkyHsagvn~vAfspd~~lmA---aaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDGKI-LATAGWDHRIRV-YSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA---AASKDARISLWKL  322 (323)
T ss_pred             cceEEccCCcE-EeecccCCcEEE-EEeccCCchhhhhhhhcceeEEEeCCCCchhh---hccCCceEEeeec
Confidence            45678899998 666669999999 9888899999999999998    333  5666   8999999999964

>KOG1787|consensus

Probab=98.17  E-value=1.5e-06  Score=95.27  Aligned_cols=209  Identities=26%  Similarity=0.240  Sum_probs=161.7

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC------CCcccCC-CCCCCCCCCCCCccc
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY------AASIQSP-SYAETPGSPPGNLPL  121 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~------~~~~~~~-~h~~~~~~~~~~l~f  121 (330)
                      ...+..+..++.+++++++..+++..++.-|+++.+....-+..++|++.+      ..+.+.. .|..    ...-.++
T Consensus       768 ~~~~~~~~~~~~s~s~~~v~aan~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~  843 (1126)
T KOG1787|consen  768 SQLDVGIVLKRPSNSSVVVVAANTLFELCQPTVLGVRSLLEFPRNISSPSVVVKRATEALRGARGSHLD----QIPLATD  843 (1126)
T ss_pred             hhhhhhhccccCCCCcceeecccccccccccceeeeeeeEEeehhccccchhhhhhhHhhccCCccccc----ccccccc
Confidence            456678999999999999999999999999999999999999999999932      1122222 2221    1111222


Q ss_pred             cCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-
Q psy682          122 TLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-  200 (330)
Q Consensus       122 s~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-  200 (330)
                      .++..++     ++..+-+|...+.+.+.+.++.++|+...++.++..+|+||.+.++ ...+.+++.+.-++|.++|. 
T Consensus       844 ~~~~~~~-----~~~~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v-~~~~~~r~~~~~~~d~~vv~~  917 (1126)
T KOG1787|consen  844 EPLQLTA-----SNQFVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRV-YSTDSLRMRQSVFRDGDVVTC  917 (1126)
T ss_pred             chhhhhh-----ccceehhhcccchhheeeeeecceEEEeccCccccccCccccccce-Eeeehhhhccccccccceeee
Confidence            2223232     3455668888888899999999999999999999999999999999 88888999999999999971 


Q ss_pred             --------------Ee-----HHHHHhh------------------------------------------hccCCCcEEE
Q psy682          201 --------------SS-----ISLAWKN------------------------------------------CQRDTSDVKV  219 (330)
Q Consensus       201 --------------aS-----t~~lW~~------------------------------------------SgS~Dgtvkl  219 (330)
                                    .+     |+..|.+                                          ++++|+.+.+
T Consensus       918 ~ar~~~~l~~~~~~~s~s~D~tI~~~~~s~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~~~~~~i  997 (1126)
T KOG1787|consen  918 GARLEQYLAALQYPVSSSEDGTIPLLYWSHISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAKGGLCLI  997 (1126)
T ss_pred             eecccccccccccccccCCCcceeeeeeccccccccccccccccCccchheecccceeeeecchhhhhhhhhccccccee
Confidence                          11     4444443                                          7888889999


Q ss_pred             EcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682          220 HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       220 ~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~  267 (330)
                      |+..|.+++++.+|........+++++.+..+.....+.-+.|+.+|+
T Consensus       998 ~~~~gl~l~~~~~~~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~ 1045 (1126)
T KOG1787|consen  998 HLVGGLLLRLLEHPINLSILGLISLSETINCLELYEPGRFVNYTKNGK 1045 (1126)
T ss_pred             eeecchhhhcccCccceechhhhhhcccccchhhccccccceeccccc
Confidence            999999999998876644455678888888888888888889998888

>KOG0974|consensus

Probab=98.15  E-value=4.8e-06  Score=89.13  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+|+.-+.|.+|+.+.-+.-..+.||.+.|.++.+|-||++                                       
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~---------------------------------------  189 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRY---------------------------------------  189 (967)
T ss_pred             EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcE---------------------------------------
Confidence            45667788888987621111236666666666666666655                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCccc--CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  158 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~--~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~  158 (330)
                        .+|.+.|+++++|..+..+...  .-||+                                         .+++..| 
T Consensus       190 --i~s~SdDRsiRlW~i~s~~~~~~~~fgHs-----------------------------------------aRvw~~~-  225 (967)
T KOG0974|consen  190 --IASVSDDRSIRLWPIDSREVLGCTGFGHS-----------------------------------------ARVWACC-  225 (967)
T ss_pred             --EEEEecCcceeeeecccccccCccccccc-----------------------------------------ceeEEEE-
Confidence              4777788889999996653111  11222                                         2223334 


Q ss_pred             EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEcccCceee
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                       |.|.  . +.+++.|-|.|+ |..+ |+.++.+.+|...-    ++..-..|..++..||++|+|+..|++++
T Consensus       226 -~~~n--~-i~t~gedctcrv-W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  226 -FLPN--R-IITVGEDCTCRV-WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             -eccc--e-eEEeccceEEEE-Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence             6666  4 445558999999 9885 77666888887653    23322223338889999999887666554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.14  E-value=0.00017  Score=80.23  Aligned_cols=110  Identities=12%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccccc--c----------------------cccCCCCcEE-Ee--HHHHHh
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ--E----------------------GKFDHPNRLF-SS--ISLAWK  208 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~--~----------------------~l~gH~d~Vi-aS--t~~lW~  208 (330)
                      ..++++|||++|+++-+.+++||+ |+++++...  .                      ....|...|. .+  .+.+  
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv-~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV--  819 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRA-LDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV--  819 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEE-EECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE--
Confidence            568899999988888888999999 998765421  0                      0112333332 22  2222  


Q ss_pred             hhccCCCcEEEEcccCceeeecCCCCC------------CCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682          209 NCQRDTSDVKVHTTFGDLLRSLDPPSG------------FASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  269 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~~G~ll~tL~~h~~------------~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~l  269 (330)
                       +-+.+++|++|+.++..+.++-+...            ...+..|++++||+++|+- +.+.++.|.++.+.+
T Consensus       820 -ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        820 -ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence             67788999999987777776654321            1268999999999988776 578899999877544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.14  E-value=3e-06  Score=55.74  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN   96 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~   96 (330)
                      |+++.+|++|.+.|++|+|+|+++.                                         .+|++.|++|++|+
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~-----------------------------------------~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNF-----------------------------------------LASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSE-----------------------------------------EEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccccc-----------------------------------------ceeeCCCCEEEEEC
Confidence            5678899999999999999998666                                         48888999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1963|consensus

Probab=98.11  E-value=2e-05  Score=83.27  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=61.0

Q ss_pred             CcccCCCcEEEeeccc----ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFN----LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~----g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |+|+.||.|.+|+-..    ....++|.=|.+.|.+++||+||..                                   
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-----------------------------------  265 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-----------------------------------  265 (792)
T ss_pred             EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-----------------------------------
Confidence            6789999999996422    1344456778888888888887777                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN  134 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~  134 (330)
                            +-|+++-+..-+|...++...-+|.-+    ++..++.+|||+. ++...+|+
T Consensus       266 ------LlSGG~E~VLv~Wq~~T~~kqfLPRLg----s~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  266 ------LLSGGREGVLVLWQLETGKKQFLPRLG----SPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             ------EeecccceEEEEEeecCCCcccccccC----CeeEEEEEcCCCCeEEEEecCc
Confidence                  477888888888888666533333433    4666788888888 44434433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.08  E-value=0.00011  Score=73.74  Aligned_cols=114  Identities=11%  Similarity=-0.005  Sum_probs=62.9

Q ss_pred             eecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-
Q psy682           48 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        48 ~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      +.+.+.++..+|+|||+.++..+              ..+....|.+|+.+++.......+.    .......|+|||+ 
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s--------------~~~~~~~l~~~dl~~g~~~~l~~~~----g~~~~~~~SpDG~~  261 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVS--------------FERGRSAIYVQDLATGQRELVASFR----GINGAPSFSPDGRR  261 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEe--------------cCCCCcEEEEEECCCCCEEEeccCC----CCccCceECCCCCE
Confidence            34555678888888888653221              1223446889998776654443332    1234689999998 


Q ss_pred             eec-cCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEE
Q psy682          127 LTH-PTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       127 l~~-~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl  179 (330)
                      ++. .+.++...+..+.+...-.+.+..+   ....+|+|||++|+.+...++..++
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i  318 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI  318 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            442 2333333344444322111112111   1356799999987766544555455

>KOG1786|consensus

Probab=98.05  E-value=1.9e-06  Score=95.34  Aligned_cols=59  Identities=36%  Similarity=0.717  Sum_probs=53.6

Q ss_pred             eeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCCCCCHHHHHHHhcC
Q psy682          268 RLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM  330 (330)
Q Consensus       268 ~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~wa~s~~~fi~~~r~  330 (330)
                      .+++.....++|||+| |||.||+|.|.|.++||++|+|+++++|++   -.+|+-||++||+
T Consensus      1007 ~~~~~~s~td~kel~p-~f~~pe~l~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~ 1065 (1081)
T KOG1786|consen 1007 SLASIESSTDVKELIP-FFYLPEFLRNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQ 1065 (1081)
T ss_pred             cccccccccchhhccc-cccCcceeecCCccccCcccCCCcccceee---ccchHHHHHHHHH
Confidence            3456667788999999 999999999999999999999999999999   4499999999995

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.05  E-value=0.00074  Score=67.94  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=23.1

Q ss_pred             cEEEeCCCccEEEEcc----CCeEEEEeeCCceeeec
Q psy682          240 ESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       240 ~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~  272 (330)
                      ...+|||||+.|+...    ...|...+.||+.-..+
T Consensus       371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence            4578999999887762    33477778888655444

>KOG2394|consensus

Probab=98.03  E-value=1.1e-05  Score=81.62  Aligned_cols=42  Identities=12%  Similarity=0.155  Sum_probs=37.8

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                      .|++.|||||||+ +|..|--+.| |++..+|++..=.||..+|
T Consensus       336 LCvcWSPDGKyIv-tGGEDDLVtV-wSf~erRVVARGqGHkSWV  377 (636)
T KOG2394|consen  336 LCVCWSPDGKYIV-TGGEDDLVTV-WSFEERRVVARGQGHKSWV  377 (636)
T ss_pred             EEEEEcCCccEEE-ecCCcceEEE-EEeccceEEEeccccccce
Confidence            5999999999955 5558999999 9999999999999999998

>KOG1517|consensus

Probab=98.03  E-value=7.9e-05  Score=80.54  Aligned_cols=171  Identities=12%  Similarity=0.119  Sum_probs=98.3

Q ss_pred             EEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCC-c-eeccCCCCCCCcceeccCCC--Cccceeeee---
Q psy682           84 VTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDP-I-LTHPTSNNNAPVPKRHLGDN--FSQKLRVRH---  155 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~-~-l~~~s~~~~~~~~~~~l~~~--~~~~~~~~~---  155 (330)
                      +++ ....|++|+.+....-.- +-.++   .-+.+++-..+. - ++++-+++...+..++...+  +-...+.|.   
T Consensus      1182 ~tG-d~r~IRIWDa~~E~~~~diP~~s~---t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1182 VTG-DVRSIRIWDAHKEQVVADIPYGSS---TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             ecC-CeeEEEEEecccceeEeecccCCC---ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            444 488899999976542221 11111   122233333222 2 55444555555555554332  111111111   


Q ss_pred             --eEEEEec--CCCeEEEeeccCCeEEEeeeccccccccc--cc-----C--CCCcEEE--eHHHHHhhhccCCCcEEEE
Q psy682          156 --NCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEG--KF-----D--HPNRLFS--SISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       156 --~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~--l~-----g--H~d~Via--St~~lW~~SgS~Dgtvkl~  220 (330)
                        ..+.+-+  .++  +++|+.|+.|++ |++..-.....  +.     |  |...-+.  .-+++   |||. +-||||
T Consensus      1258 ~Iv~~slq~~G~~e--lvSgs~~G~I~~-~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA---sGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGE--LVSGSQDGDIQL-LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA---SGSA-QLIKIY 1330 (1387)
T ss_pred             cceeEEeecCCCcc--eeeeccCCeEEE-EecccCcccccceeeeccccCccceeeeeccCCCeee---ecCc-ceEEEE
Confidence              2233434  443  667889999999 99864111111  11     1  1110011  12333   8888 999999


Q ss_pred             cccCceeeecCCCCCC-----CCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          221 TTFGDLLRSLDPPSGF-----ASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       221 ~~~G~ll~tL~~h~~~-----~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      +..|+.+..++.+.++     +++.+++|.|.-..+|.|+ |.++.+|+..
T Consensus      1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            9999999999987664     5899999999999999985 6678888754

>KOG1007|consensus

Probab=98.03  E-value=2.5e-05  Score=74.25  Aligned_cols=37  Identities=22%  Similarity=0.401  Sum_probs=33.7

Q ss_pred             CcccCCCcEEEeecc-cccccceeecCCCceeEEEeCC
Q psy682            1 MSGGDKGIVEVWRTF-NLALLYAFPSCDSSVRSLALSH   37 (330)
Q Consensus         1 asgs~d~~V~lW~~~-~g~~l~tl~gH~~~V~svafSp   37 (330)
                      |||++||-||+||.. ....++++++|+.|||+|.|+|
T Consensus       231 vt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  231 VTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             EEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence            689999999999965 4568899999999999999999

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00013  Score=73.11  Aligned_cols=175  Identities=11%  Similarity=0.027  Sum_probs=97.3

Q ss_pred             cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCC-CCCcceeccCCCCccc---eeeeeeEEEEecC
Q psy682           89 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN-NAPVPKRHLGDNFSQK---LRVRHNCFVTTVD  163 (330)
Q Consensus        89 ~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~-~~~~~~~~l~~~~~~~---~~~~~~~~~~spD  163 (330)
                      ...+.+|+.++...++...+.    ..+.+..+|||++ ++..+... ...++.+.+...-...   +.+...+.++|||
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~----~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD  250 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSP----EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD  250 (427)
T ss_pred             ccEEEEECCCCCCceEeccCC----CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence            445677777776666665554    3566789999998 55433222 2224555543221111   2223346789999


Q ss_pred             CCeEEEeeccCCeEEEeeec--ccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEcc--cCceeeecCCC
Q psy682          164 SRFLLACGFWDNSFREPFTT--MYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTT--FGDLLRSLDPP  233 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~--~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~~h  233 (330)
                      |+.|+.+...|+..+| |..  .+++ .+.+..|...+    ++.  .-++.  ....+|...||..  .|...+.+..+
T Consensus       251 G~~la~~~~~~g~~~I-y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f--~s~~~g~~~Iy~~~~~~g~~~~lt~~  326 (427)
T PRK02889        251 GRTLAVALSRDGNSQI-YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYF--TSDRGGAPQIYRMPASGGAAQRVTFT  326 (427)
T ss_pred             CCEEEEEEccCCCceE-EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEE--EecCCCCcEEEEEECCCCceEEEecC
Confidence            9997766667888888 765  3333 34454444322    211  11111  2234566777743  34333333322


Q ss_pred             CCCCCCcEEEeCCCccEEEEcc-C---CeEEEEeeCCceeeecc
Q psy682          234 SGFASPESVVMSREGVIVVNYE-R---GHIAAFTMNGNRLRHES  273 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~~-~---~~~~~~s~nG~~las~~  273 (330)
                      ..  .....+|||||+.||..+ .   ..+..|..++.....+.
T Consensus       327 g~--~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt  368 (427)
T PRK02889        327 GS--YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT  368 (427)
T ss_pred             CC--CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence            22  345689999999998763 2   25777776655444443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.99  E-value=0.00055  Score=66.62  Aligned_cols=71  Identities=20%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecc--cccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTM--YLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPP  233 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h  233 (330)
                      ..++++|||++|+++--.+++|-+ |+++  +|+|...-                          .....|         
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~v-f~~d~~~g~l~~~~--------------------------~~~~~G---------  291 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISV-FDLDPATGTLTLVQ--------------------------TVPTGG---------  291 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEE-EEECTTTTTEEEEE--------------------------EEEESS---------
T ss_pred             eeEEEecCCCEEEEEeccCCEEEE-EEEecCCCceEEEE--------------------------EEeCCC---------
Confidence            468899999999999888899998 8883  23332100                          000011         


Q ss_pred             CCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682          234 SGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  265 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n  265 (330)
                         ..++.++|+|||+.|+.+  ..+.+..|.+|
T Consensus       292 ---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  292 ---KFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             ---SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ---CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence               158999999999999887  47789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240|consensus

Probab=97.97  E-value=9e-05  Score=81.06  Aligned_cols=184  Identities=14%  Similarity=0.072  Sum_probs=107.0

Q ss_pred             eecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcce
Q psy682           12 WRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFA   91 (330)
Q Consensus        12 W~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~t   91 (330)
                      |++ .|.++..|..|...|..+|-|++-.                       +                 ..||++.|+|
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~-----------------------s-----------------~FvsgS~DGt 1072 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT-----------------------S-----------------LFVSGSDDGT 1072 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCC-----------------------c-----------------eEEEecCCce
Confidence            877 6888889999999988888877431                       2                 2499999999


Q ss_pred             EEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEee
Q psy682           92 INRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACG  171 (330)
Q Consensus        92 v~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg  171 (330)
                      ||+|+..--     .||.++.++                       ...+...+       .+..++.+-+.|.+ +|+|
T Consensus      1073 VKvW~~~k~-----~~~~~s~rS-----------------------~ltys~~~-------sr~~~vt~~~~~~~-~Av~ 1116 (1431)
T KOG1240|consen 1073 VKVWNLRKL-----EGEGGSARS-----------------------ELTYSPEG-------SRVEKVTMCGNGDQ-FAVS 1116 (1431)
T ss_pred             EEEeeehhh-----hcCcceeee-----------------------eEEEeccC-------CceEEEEeccCCCe-EEEE
Confidence            999998322     222211110                       11111100       11245666677777 6667


Q ss_pred             ccCCeEEEeeeccc--cc-----ccccccCCCCcEEEe----HHHHHh---hhccCCCcEEEEcc-cCceeeecCCCCCC
Q psy682          172 FWDNSFREPFTTMY--LA-----LQEGKFDHPNRLFSS----ISLAWK---NCQRDTSDVKVHTT-FGDLLRSLDPPSGF  236 (330)
Q Consensus       172 ~~D~tirl~w~~~~--g~-----l~~~l~gH~d~ViaS----t~~lW~---~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~  236 (330)
                      +.||.|++ ..++.  ++     .......+.+.+.++    +...=.   +-+-.-+-|..|+. .-.-+.+++....+
T Consensus      1117 t~DG~v~~-~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRV-LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             cCCCeEEE-EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            89999999 88764  11     122223333333222    111000   00111222444543 22233445444334


Q ss_pred             CCCcEEEeCCCccEEEEc-cCCeEEEEeeCCc-eeeecc
Q psy682          237 ASPESVVMSREGVIVVNY-ERGHIAAFTMNGN-RLRHES  273 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~-~las~~  273 (330)
                      +.|++++.+|.|..++.| ++|.+.+|.+.=+ ++.+.+
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence            589999999999999999 6999999987633 344544

>KOG2110|consensus

Probab=97.95  E-value=0.00013  Score=71.03  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=82.3

Q ss_pred             EEEecCCCeEEEeeccC-CeEEEeeecccccccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEE-E-cccCceee
Q psy682          158 FVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKV-H-TTFGDLLR  228 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl-~-~~~G~ll~  228 (330)
                      +++++++-|++-=++.+ +.|.| |++.+-+....+..|.+.|  +  .+  +.++   +||+-|||+- + ..+|+++.
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l-~d~~nl~~v~~I~aH~~~lAalafs~~G~llA---TASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVL-FDTINLQPVNTINAHKGPLAALAFSPDGTLLA---TASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEE-EEcccceeeeEEEecCCceeEEEECCCCCEEE---EeccCceEEEEEEcCCccEee
Confidence            34445555754433333 45899 9999999999999999998  2  22  7777   8999999754 5 56899999


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCce
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR  268 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~  268 (330)
                      .|+--.-+..+++++||||+++|++. +.+++|.|.++-..
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            99865445689999999999999877 59999999877554

>KOG2394|consensus

Probab=97.93  E-value=7.3e-05  Score=75.86  Aligned_cols=91  Identities=22%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             CCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCC
Q psy682          136 APVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTS  215 (330)
Q Consensus       136 ~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dg  215 (330)
                      +++.+|++++-       ..+.|+|||||++ +||-+.|+.+|| |+.++-+|+...            +          
T Consensus       281 NPv~~w~~~~g-------~in~f~FS~DG~~-LA~VSqDGfLRv-F~fdt~eLlg~m------------k----------  329 (636)
T KOG2394|consen  281 NPVARWHIGEG-------SINEFAFSPDGKY-LATVSQDGFLRI-FDFDTQELLGVM------------K----------  329 (636)
T ss_pred             CccceeEeccc-------cccceeEcCCCce-EEEEecCceEEE-eeccHHHHHHHH------------H----------
Confidence            44556665332       3477889999999 777889999999 999765554322            1          


Q ss_pred             cEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCcee-eeccCc
Q psy682          216 DVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRL-RHESHN  275 (330)
Q Consensus       216 tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~l-as~~~~  275 (330)
                                        +-++...+|++||||++||.|+ |+.+-.||.--+.+ |--..|
T Consensus       330 ------------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  330 ------------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             ------------------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence                              1123678999999999999996 88888898654444 443444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.90  E-value=0.00023  Score=70.45  Aligned_cols=179  Identities=13%  Similarity=0.121  Sum_probs=97.1

Q ss_pred             cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      ..++.|.+.|..+.+.+.+++.....--.++|||||+.                        +               . 
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~------------------------~---------------y-   52 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRY------------------------L---------------Y-   52 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSE------------------------E---------------E-
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCE------------------------E---------------E-
Confidence            35788999998888888888766544445778888777                        1               2 


Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecC
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVD  163 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spD  163 (330)
                      + +++|+.|-++++...                         ++          +.....+.        ....+++|+|
T Consensus        53 v-~~rdg~vsviD~~~~-------------------------~~----------v~~i~~G~--------~~~~i~~s~D   88 (369)
T PF02239_consen   53 V-ANRDGTVSVIDLATG-------------------------KV----------VATIKVGG--------NPRGIAVSPD   88 (369)
T ss_dssp             E-EETTSEEEEEETTSS-------------------------SE----------EEEEE-SS--------EEEEEEE--T
T ss_pred             E-EcCCCeEEEEECCcc-------------------------cE----------EEEEecCC--------CcceEEEcCC
Confidence            2 256888999999443                         11          11222222        3468999999


Q ss_pred             CCeEEEeeccCCeEEEeeecccccccccccCC-------CCcE---EEe-HHHHHhhhccCCCcEEEEcc---cCcee--
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLALQEGKFDH-------PNRL---FSS-ISLAWKNCQRDTSDVKVHTT---FGDLL--  227 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH-------~d~V---iaS-t~~lW~~SgS~Dgtvkl~~~---~G~ll--  227 (330)
                      |++++++.++++++.+ ++.++.++++.+...       ..+|   +++ --..|-. .-.| +=++|-.   +.+.+  
T Consensus        89 G~~~~v~n~~~~~v~v-~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv-~lkd-~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSV-IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV-NLKD-TGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             TTEEEEEEEETTEEEE-EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE-EETT-TTEEEEEETTTSSCEEE
T ss_pred             CCEEEEEecCCCceeE-eccccccceeecccccccccccCCCceeEEecCCCCEEEE-EEcc-CCeEEEEEeccccccce
Confidence            9999999999999999 999988887766443       2233   222 0000100 0011 1133422   22222  


Q ss_pred             eecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEE-eeCCceeeec
Q psy682          228 RSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAF-TMNGNRLRHE  272 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~-s~nG~~las~  272 (330)
                      +++.. ..  .+....|+|||+.++.+  ..+.+..+ ...+++.+..
T Consensus       166 ~~i~~-g~--~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  166 TTIKV-GR--FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEE---T--TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eeecc-cc--cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            22321 22  57789999999866444  35555554 4455555544

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.90  E-value=1.5e-05  Score=52.28  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      |+++++|++|.+  .|++|+|+|++..+++++ |++++.|.
T Consensus         1 g~~~~~~~~h~~--~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSS--SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSS--SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCC--cEEEEEEecccccceeeCCCCEEEEEC
Confidence            678999999999  999999999999999996 78888884

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1523|consensus

Probab=97.90  E-value=0.0001  Score=70.84  Aligned_cols=148  Identities=15%  Similarity=0.143  Sum_probs=93.9

Q ss_pred             eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC-CCCCcccCCCCCCCCCCCCCCccccCC
Q psy682           46 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP-DYAASIQSPSYAETPGSPPGNLPLTLD  124 (330)
Q Consensus        46 ~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~h~~~~~~~~~~l~fs~D  124 (330)
                      ++..|+..++.|-.+|.++-|                 |+++.|...++|.. +++                        
T Consensus        50 tls~Hd~~vtgvdWap~snrI-----------------vtcs~drnayVw~~~~~~------------------------   88 (361)
T KOG1523|consen   50 TLSEHDKIVTGVDWAPKSNRI-----------------VTCSHDRNAYVWTQPSGG------------------------   88 (361)
T ss_pred             ehhhhCcceeEEeecCCCCce-----------------eEccCCCCccccccCCCC------------------------
Confidence            345677777777777777653                 88888888899988 222                        


Q ss_pred             CceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc----cccccCCCCcEE
Q psy682          125 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPNRLF  200 (330)
Q Consensus       125 ~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d~Vi  200 (330)
                       +            |...|   ..-++..-..|+.-+|.+.. +|.|+.-+.|-+ |..+.-+-    .++...+...| 
T Consensus        89 -~------------Wkptl---vLlRiNrAAt~V~WsP~enk-FAVgSgar~isV-cy~E~ENdWWVsKhikkPirStv-  149 (361)
T KOG1523|consen   89 -T------------WKPTL---VLLRINRAATCVKWSPKENK-FAVGSGARLISV-CYYEQENDWWVSKHIKKPIRSTV-  149 (361)
T ss_pred             -e------------eccce---eEEEeccceeeEeecCcCce-EEeccCccEEEE-EEEecccceehhhhhCCccccce-
Confidence             1            21111   00001112368888998877 667777888998 88863211    11222233322 


Q ss_pred             EeHHHHHhh------hccCCCcEEEEcc-------------------cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          201 SSISLAWKN------CQRDTSDVKVHTT-------------------FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       201 aSt~~lW~~------SgS~Dgtvkl~~~-------------------~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                        +..-|+.      .||.|+.|+++..                   .|+|+..+..-.  +.|..|.|||+|..|+..+
T Consensus       150 --~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g--gwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  150 --TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG--GWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             --eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC--CceeeeEeCCCCCEeeEec
Confidence              1112322      7999999999862                   388887776333  4899999999999999986


Q ss_pred             CC
Q psy682          256 RG  257 (330)
Q Consensus       256 ~~  257 (330)
                      -+
T Consensus       226 Hd  227 (361)
T KOG1523|consen  226 HD  227 (361)
T ss_pred             CC
Confidence            33

>KOG0649|consensus

Probab=97.86  E-value=0.00019  Score=67.03  Aligned_cols=148  Identities=13%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEe-CCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLAL-SHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svaf-Spdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      .|+.|+.+.-|++.+|+..++|+||++.|.+|+- +..+|+                                       
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi---------------------------------------  171 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI---------------------------------------  171 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce---------------------------------------
Confidence            4668999999999999999999999999999998 665555                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                         .|++.|+|+++|+..++...+..+-                       +..  +...|-       ..--+.-|++.
T Consensus       172 ---lsG~EDGtvRvWd~kt~k~v~~ie~-----------------------yk~--~~~lRp-------~~g~wigala~  216 (325)
T KOG0649|consen  172 ---LSGAEDGTVRVWDTKTQKHVSMIEP-----------------------YKN--PNLLRP-------DWGKWIGALAV  216 (325)
T ss_pred             ---eecCCCccEEEEeccccceeEEecc-----------------------ccC--hhhcCc-------ccCceeEEEec
Confidence               7999999999999966532221100                       000  001110       00011245544


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEcccCceeeecCC
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDP  232 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~  232 (330)
                        |..+ +.||. -+.+-+ |.+..-+..+ .+.-..+|    |.-...+   +|...+-|.-|+..|.+-.-...
T Consensus       217 --~edW-lvCGg-Gp~lsl-whLrsse~t~-vfpipa~v~~v~F~~d~vl---~~G~g~~v~~~~l~Gvl~a~ip~  283 (325)
T KOG0649|consen  217 --NEDW-LVCGG-GPKLSL-WHLRSSESTC-VFPIPARVHLVDFVDDCVL---IGGEGNHVQSYTLNGVLQANIPV  283 (325)
T ss_pred             --cCce-EEecC-CCceeE-EeccCCCceE-EEecccceeEeeeecceEE---EeccccceeeeeeccEEEEeccC
Confidence              4446 66763 677888 9997555443 23333333    3333334   67777788889998877655443

>KOG2445|consensus

Probab=97.85  E-value=6.3e-05  Score=71.98  Aligned_cols=118  Identities=11%  Similarity=0.074  Sum_probs=82.9

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeeccc----ccccccccCCCCcEE----Ee----HHHHHhhhccCCCcEEEEcc
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMY----LALQEGKFDHPNRLF----SS----ISLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~----g~l~~~l~gH~d~Vi----aS----t~~lW~~SgS~Dgtvkl~~~  222 (330)
                      .+|+.|.+.|+.++ +++.|.++|| |+...    ..+......|...|.    +.    .+.+   +.|.|+|++||-.
T Consensus        16 ihdVs~D~~GRRmA-tCSsDq~vkI-~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA---~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMA-TCSSDQTVKI-WDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA---TCSYDRTVSIWEE   90 (361)
T ss_pred             eeeeeecccCceee-eccCCCcEEE-EeccCCCCceEEeeeEEecCCcEEEEEecCccccceEE---EEecCCceeeeee
Confidence            36888999999955 5567999999 99533    245666777877662    11    4555   8999999999964


Q ss_pred             c-------C---ceeeecCCCCCCCCCcEEEeCCC--ccEEEEc-cCCeEEEEe-eCCceeeeccCccccc
Q psy682          223 F-------G---DLLRSLDPPSGFASPESVVMSRE--GVIVVNY-ERGHIAAFT-MNGNRLRHESHNDNLQ  279 (330)
Q Consensus       223 ~-------G---~ll~tL~~h~~~~~v~~v~fS~d--G~~l~s~-~~~~~~~~s-~nG~~las~~~~~dVk  279 (330)
                      +       |   ..+.+|..-..  .|..|.|.|-  |-.+|++ .+|.+++|- +|=--|....+...++
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~Dsrs--sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRS--SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             cccccccccceeEEEEEeecCCc--ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence            2       3   22445655444  8999999987  8888888 499999984 4544455555554444

>KOG1963|consensus

Probab=97.74  E-value=0.00033  Score=74.26  Aligned_cols=212  Identities=10%  Similarity=0.056  Sum_probs=121.3

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTV   84 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~v   84 (330)
                      .+.+|+++-..+|+.++.|.+|...+.++.+-|...-                                      .....
T Consensus        35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~--------------------------------------~~~~~   76 (792)
T KOG1963|consen   35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN--------------------------------------ANYLI   76 (792)
T ss_pred             eCCEEEEEecchHhhhhhcccccCccceeeecCCCcc--------------------------------------ceEEE
Confidence            4568999999999999999999999999999884221                                      11346


Q ss_pred             EcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc--ceeccCC------------CCccc
Q psy682           85 TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV--PKRHLGD------------NFSQK  150 (330)
Q Consensus        85 S~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~--~~~~l~~------------~~~~~  150 (330)
                      +++.+++|++|+...+.+..+..-+-.+..-+....+-.++..+..+.......  ...++.+            ...+.
T Consensus        77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen   77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence            778888899999865554333211101111111111111111110000000000  0011110            01111


Q ss_pred             eeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---E----E--e---HHHHHhhhccCCCc
Q psy682          151 LRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---F----S--S---ISLAWKNCQRDTSD  216 (330)
Q Consensus       151 ~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---i----a--S---t~~lW~~SgS~Dgt  216 (330)
                      +..+  ..+++.++-|++...+.  +..+-+ |...++.  ....+|...+   +    .  |   -+.+   +|-.||-
T Consensus       157 ~~~~~~~~~I~~~~~ge~~~i~~--~~~~~~-~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~A---a~d~dGr  228 (792)
T KOG1963|consen  157 LKEHQEPKSIVDNNSGEFKGIVH--MCKIHI-YFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLA---AGDSDGR  228 (792)
T ss_pred             hhhhcCCccEEEcCCceEEEEEE--eeeEEE-EEecccc--eeeccchhhhhhcccceeEEeccccceEE---EeccCCc
Confidence            1122  35788888888755554  555666 7776544  3444444444   1    1  1   2223   7888999


Q ss_pred             EEEEcccC----ce-eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          217 VKVHTTFG----DL-LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       217 vkl~~~~G----~l-l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      |.+|...|    ++ -++|.=|.+  +|.+++||+||..|.||+ .+-++.|+.
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~~--~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHHD--EVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             EEEEeccccccccccceEEEeccc--ccceeEEecCCceEeecccceEEEEEee
Confidence            99997655    12 234555778  999999999999999997 556777764

>KOG1310|consensus

Probab=97.71  E-value=6.2e-05  Score=76.62  Aligned_cols=63  Identities=10%  Similarity=0.079  Sum_probs=41.6

Q ss_pred             EEEEecC-CCeEEEeeccCCeEEEeeecccc----------cccccccCCCCcE--EEe----HHHHHhhhccCCCcEEE
Q psy682          157 CFVTTVD-SRFLLACGFWDNSFREPFTTMYL----------ALQEGKFDHPNRL--FSS----ISLAWKNCQRDTSDVKV  219 (330)
Q Consensus       157 ~~~~spD-g~~i~asg~~D~tirl~w~~~~g----------~l~~~l~gH~d~V--iaS----t~~lW~~SgS~Dgtvkl  219 (330)
                      |+-|-|. +..|+.+|..|+-||| +++...          ........|.++|  ||.    --..|  |+|.|||++=
T Consensus        98 svKFvP~tnnriv~sgAgDk~i~l-fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw--sasEDGtirQ  174 (758)
T KOG1310|consen   98 SVKFVPYTNNRIVLSGAGDKLIKL-FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW--SASEDGTIRQ  174 (758)
T ss_pred             EEeeeccCCCeEEEeccCcceEEE-EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE--EecCCcceee
Confidence            4555552 3345667778999999 999631          2344455677777  654    11223  8999999999


Q ss_pred             Ecc
Q psy682          220 HTT  222 (330)
Q Consensus       220 ~~~  222 (330)
                      ++.
T Consensus       175 yDi  177 (758)
T KOG1310|consen  175 YDI  177 (758)
T ss_pred             ecc
Confidence            874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.69  E-value=0.00067  Score=66.64  Aligned_cols=176  Identities=15%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCC-CCCcceeccCCCCccc---eeeeeeEEEEec
Q psy682           88 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN-NAPVPKRHLGDNFSQK---LRVRHNCFVTTV  162 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~-~~~~~~~~l~~~~~~~---~~~~~~~~~~sp  162 (330)
                      ....|.+++.++...+.+..+.    ..+.+..++||++ ++..+..+ ...+..+.+...-...   ......+.+++|
T Consensus       168 ~~~~l~~~d~~g~~~~~l~~~~----~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       168 RRYELQVADYDGANPQTITRSR----EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP  243 (417)
T ss_pred             CcceEEEEcCCCCCCEEeecCC----CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence            3445677777766666665554    2456788999999 44322222 2223444432210011   111224678999


Q ss_pred             CCCeEEEeeccCCe--EEEeeecccccccccccCCCCcE----EEe--HHHHHhhhccCCCcEEE--EcccCceeeecCC
Q psy682          163 DSRFLLACGFWDNS--FREPFTTMYLALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKV--HTTFGDLLRSLDP  232 (330)
Q Consensus       163 Dg~~i~asg~~D~t--irl~w~~~~g~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl--~~~~G~ll~tL~~  232 (330)
                      ||+.|+.+.+.++.  |.+ |++.+++..+ +..|....    +..  .-+++  +...+|...|  ++..+...+.|..
T Consensus       244 Dg~~l~~~~~~~~~~~i~~-~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~--~s~~~g~~~iy~~d~~~~~~~~l~~  319 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYV-MDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAF--TSDRGGSPQIYMMDADGGEVRRLTF  319 (417)
T ss_pred             CCCEEEEEECCCCCccEEE-EECCCCCEEE-CCCCCCCCCCEEECCCCCEEEE--EECCCCCceEEEEECCCCCEEEeec
Confidence            99987766555544  677 8887665433 33333221    111  11111  2233444344  4555544555655


Q ss_pred             CCCCCCCcEEEeCCCccEEEEccC----CeEEEEeeCCceeeecc
Q psy682          233 PSGFASPESVVMSREGVIVVNYER----GHIAAFTMNGNRLRHES  273 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~~~----~~~~~~s~nG~~las~~  273 (330)
                      +..  .+..++|||||+.|+..+.    ..+..+.+++.....+.
T Consensus       320 ~~~--~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       320 RGG--YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             CCC--CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence            544  6788999999999888742    26777777765444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0650|consensus

Probab=97.66  E-value=0.00027  Score=72.68  Aligned_cols=52  Identities=10%  Similarity=0.057  Sum_probs=43.5

Q ss_pred             hccCCCcEEEEcc--cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          210 CQRDTSDVKVHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       210 SgS~Dgtvkl~~~--~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      .||.|+.+..++.  .-+..++|+.|..  .|++|+|.+-=-+.+||+ +++++.|-
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~--avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEK--AVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhh--hhhhhhhccccceeeeecCCCcEEEEe
Confidence            7888988877765  5788999999999  999999999988999996 57777664

>KOG1587|consensus

Probab=97.66  E-value=0.00063  Score=70.73  Aligned_cols=103  Identities=11%  Similarity=0.007  Sum_probs=72.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecc-cccccccccCCCCcEE--E-e----HHHHHhhhccCCCcEEEEccc---C
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTM-YLALQEGKFDHPNRLF--S-S----ISLAWKNCQRDTSDVKVHTTF---G  224 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l~~~l~gH~d~Vi--a-S----t~~lW~~SgS~Dgtvkl~~~~---G  224 (330)
                      .++.++|=+.-++.++. |-++|+ |+.. .-.++-.+..+.|.|.  + |    ++-+   ++..||++-||+..   -
T Consensus       402 ~~v~~nPF~~k~fls~g-DW~vri-Ws~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~---~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVG-DWTVRI-WSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA---TVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             EeeecCCCccceeeeec-cceeEe-ccccCCCCcchhhhhccceeeeeEEcCcCceEEE---EEcCCCceehhhhhcccc
Confidence            46667776655555554 999999 9997 5667777888888773  1 1    3333   78889999999862   2


Q ss_pred             ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          225 DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       225 ~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      +...+..-+..  ..+.+.++++|++|+.|+ .|+++.+...
T Consensus       477 ~Pv~s~~~~~~--~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  477 EPVLSQKVCSP--ALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CCccccccccc--ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            33444433323  567788888899999996 8888887754

>KOG1272|consensus

Probab=97.64  E-value=6e-05  Score=75.32  Aligned_cols=96  Identities=21%  Similarity=0.325  Sum_probs=74.5

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      .|..+|+|-||..+..+.|.-+..|.+.|.+||+.|+|++                                        
T Consensus       268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~Y----------------------------------------  307 (545)
T KOG1272|consen  268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRY----------------------------------------  307 (545)
T ss_pred             EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcE----------------------------------------
Confidence            4778999999999888888889999999999999999998                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  143 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l  143 (330)
                       .||++.|..+|+|+...-.  ++..|..  +-+...++||+-|.+|. +.|....+|.-.+
T Consensus       308 -MaTtG~Dr~~kIWDlR~~~--ql~t~~t--p~~a~~ls~SqkglLA~-~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  308 -MATTGLDRKVKIWDLRNFY--QLHTYRT--PHPASNLSLSQKGLLAL-SYGDHVQIWKDAL  363 (545)
T ss_pred             -EeecccccceeEeeecccc--ccceeec--CCCccccccccccceee-ecCCeeeeehhhh
Confidence             5999999999999985433  2222221  34677899999999885 4444454554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.0095  Score=58.14  Aligned_cols=127  Identities=16%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc-------cCCCCcEEEe-------HHHHHhhhccCCCcEE
Q psy682          153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-------FDHPNRLFSS-------ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       153 ~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-------~gH~d~ViaS-------t~~lW~~SgS~Dgtvk  218 (330)
                      .|..+..|+||+++++++-=---.|.+ ++++.|+|...-       .|-.-.+|..       +..|       ++||.
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~-y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-------~stV~  216 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFL-YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-------NSTVD  216 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEE-EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-------CCEEE
Confidence            345677799999998887532333666 888888763221       1111112211       2222       55777


Q ss_pred             EEcccC--ceeeecCCC----CCC---CCCcEEEeCCCccEEEEcc--CCeEEEEe--eCCceeeeccCccccccccccc
Q psy682          219 VHTTFG--DLLRSLDPP----SGF---ASPESVVMSREGVIVVNYE--RGHIAAFT--MNGNRLRHESHNDNLQELIPEL  285 (330)
Q Consensus       219 l~~~~G--~ll~tL~~h----~~~---~~v~~v~fS~dG~~l~s~~--~~~~~~~s--~nG~~las~~~~~dVkELipef  285 (330)
                      +|..++  .-++.|..+    .++   .+...|.+||||++|...+  .++|..|+  ++|.+|+.++... ..+..|-.
T Consensus       217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~  295 (346)
T COG2706         217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRD  295 (346)
T ss_pred             EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCcc
Confidence            775432  333433332    121   3677999999999998875  55788885  5566676665332 33444776


Q ss_pred             cch
Q psy682          286 FFL  288 (330)
Q Consensus       286 ~~~  288 (330)
                      |.+
T Consensus       296 F~i  298 (346)
T COG2706         296 FNI  298 (346)
T ss_pred             cee
Confidence            665

>KOG4227|consensus

Probab=97.63  E-value=0.001  Score=65.65  Aligned_cols=213  Identities=13%  Similarity=0.063  Sum_probs=112.0

Q ss_pred             cccCCCcEEEeecccccccceeec--CCCceeEEEeCCCCCcCcceeeeecC-------------------------ccE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPS--CDSSVRSLALSHDQKYSPMMFSTVLD-------------------------DVC   54 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~g--H~~~V~svafSpdg~~~~l~~~~~~~-------------------------d~~   54 (330)
                      ||+.+++|.+-++.+.+-+..+..  ..+.|..+.-+|-..+    +.....                         ..+
T Consensus       122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~----~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT----LIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             cCCCcceeEeeecccceeeeeecccCcccceeecccCCCCce----EEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            788999999999998777766632  2348999999996555    211111                         123


Q ss_pred             EEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCC---CCccccCCCceecc
Q psy682           55 MSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPP---GNLPLTLDPILTHP  130 (330)
Q Consensus        55 ~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~---~~l~fs~D~~l~~~  130 (330)
                      +++.|.|--|-+                +++++..+++.+|+..-++..-.. +.........   -.+.|+|+|.... 
T Consensus       198 ~t~~F~P~~P~L----------------i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m-  260 (609)
T KOG4227|consen  198 YTAEFHPETPAL----------------ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM-  260 (609)
T ss_pred             eeeeecCCCcee----------------EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh-
Confidence            444444444432                577888888999998433211100 1100001111   2466777777221 


Q ss_pred             CCCCCCCcceeccCCCCccceeeee-eEEEEecC-CC--e---------------EEEeeccCCeEEEeeecccccccc-
Q psy682          131 TSNNNAPVPKRHLGDNFSQKLRVRH-NCFVTTVD-SR--F---------------LLACGFWDNSFREPFTTMYLALQE-  190 (330)
Q Consensus       131 s~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~spD-g~--~---------------i~asg~~D~tirl~w~~~~g~l~~-  190 (330)
                             .++|.+. |+.  +..++ .|++|-.| .+  |               -+++|+-|=.|-+ |.+-...--. 
T Consensus       261 -------siRR~~~-P~~--~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~-WklP~~~ds~G  329 (609)
T KOG4227|consen  261 -------SIRRGKC-PLY--FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHI-WKLPRANDSYG  329 (609)
T ss_pred             -------hhhccCC-CEE--eeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEE-EecCCCccccC
Confidence                   1334332 211  34444 46665444 22  1               1333333333333 3332111000 


Q ss_pred             -cccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          191 -GKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       191 -~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                       +..||..--.-|.+.                . .+.+..|+||..  .|+.|.|+|.-..|+|.+ ...+++||+-
T Consensus       330 ~~~IG~~~~~~~~~~~----------------i-~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  330 FTQIGHDEEEMPSEIF----------------I-EKELTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccccCcchhhCchhhe----------------e-cceeEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence             011221100001000                0 124567999988  999999999999999986 7778888753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.0059  Score=59.52  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCC
Q psy682           54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSN  133 (330)
Q Consensus        54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~  133 (330)
                      +-...|.|+++.|               +++.-+.|+ |.++..+-+.+.-...+.-.....+..+.|.||++++=.-.-
T Consensus       147 ~H~a~~tP~~~~l---------------~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         147 VHSANFTPDGRYL---------------VVPDLGTDR-IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             cceeeeCCCCCEE---------------EEeecCCce-EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence            5555566666554               344445565 677776533222222222233456778999999995421011


Q ss_pred             CCCCcceec------------cCCCCccceeeee--eEEEEecCCCeEEEeeccCCeEEEeeeccc--ccccccccCCCC
Q psy682          134 NNAPVPKRH------------LGDNFSQKLRVRH--NCFVTTVDSRFLLACGFWDNSFREPFTTMY--LALQEGKFDHPN  197 (330)
Q Consensus       134 ~~~~~~~~~------------l~~~~~~~~~~~~--~~~~~spDg~~i~asg~~D~tirl~w~~~~--g~l~~~l~gH~d  197 (330)
                      -++.+.-+.            .-.-+...+.+..  ..+.++|||++|++|-=-..+|-+ |.++.  |+|.        
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~-f~V~~~~g~L~--------  281 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV-FSVDPDGGKLE--------  281 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE-EEEcCCCCEEE--------
Confidence            111111111            1111222233322  367789999999998655556666 65531  1111        


Q ss_pred             cEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCc
Q psy682          198 RLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGN  267 (330)
Q Consensus       198 ~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~  267 (330)
                                        .+..|...|+            .++...|+|.|.+|+.+  ..+++..|.+|.+
T Consensus       282 ------------------~~~~~~teg~------------~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         282 ------------------LVGITPTEGQ------------FPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             ------------------EEEEeccCCc------------CCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence                              1111222222            58899999999999998  4778999998864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.62  E-value=0.0024  Score=63.53  Aligned_cols=123  Identities=11%  Similarity=-0.036  Sum_probs=65.3

Q ss_pred             eecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-
Q psy682           48 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        48 ~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      ..+.+.++..+|||||+.|+..+              ..+....|.+|+.+++.........    .......|+|||+ 
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s--------------~~~~~~~l~~~~l~~g~~~~l~~~~----g~~~~~~~SpDG~~  256 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVS--------------FEQKRPRIFVQNLDTGRREQITNFE----GLNGAPAWSPDGSK  256 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEE--------------cCCCCCEEEEEECCCCCEEEccCCC----CCcCCeEECCCCCE
Confidence            34556678888999998763221              1122345778888766544443222    1234689999998 


Q ss_pred             eec-cCCCCCCCcceeccCCCCccceee---eeeEEEEecCCCeEEEeeccCCeEEE-eeecccccc
Q psy682          127 LTH-PTSNNNAPVPKRHLGDNFSQKLRV---RHNCFVTTVDSRFLLACGFWDNSFRE-PFTTMYLAL  188 (330)
Q Consensus       127 l~~-~s~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~spDg~~i~asg~~D~tirl-~w~~~~g~l  188 (330)
                      ++. .+.++...++...+...-.+.+..   ......++|||+.|+.++..++..++ -+++.+|+.
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            442 223333333333332211111111   12346789999987766544544444 155555554

>KOG4547|consensus

Probab=97.60  E-value=0.00065  Score=69.43  Aligned_cols=39  Identities=10%  Similarity=0.089  Sum_probs=32.1

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                      +.+++|||++++ +||  +.||+ |++++++++.++.||...|
T Consensus       149 sl~is~D~~~l~-~as--~~ik~-~~~~~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  149 SLCISPDGKILL-TAS--RQIKV-LDIETKEVVITFTGHGSPV  187 (541)
T ss_pred             eEEEcCCCCEEE-ecc--ceEEE-EEccCceEEEEecCCCcce
Confidence            555899999854 443  78999 9999999999999998876

>KOG1334|consensus

Probab=97.59  E-value=0.00029  Score=70.89  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             eeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccc--c----------cccc-cccCCCCc--E----EE---eHHHHHh
Q psy682          151 LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY--L----------ALQE-GKFDHPNR--L----FS---SISLAWK  208 (330)
Q Consensus       151 ~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~--g----------~l~~-~l~gH~d~--V----ia---St~~lW~  208 (330)
                      ..++..|++++.|+.=|++ +|.|--|-+ |+-+-  |          .+.. ...||.+.  |    |.   +-..+  
T Consensus       335 ~~v~ITgl~Ysh~~sElLa-SYnDe~IYL-F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv--  410 (559)
T KOG1334|consen  335 DPVNITGLVYSHDGSELLA-SYNDEDIYL-FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV--  410 (559)
T ss_pred             CcccceeEEecCCccceee-eecccceEE-eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEE--
Confidence            3444569999988877666 588999988 86543  3          2222 37788764  2    21   11111  


Q ss_pred             hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeee
Q psy682          209 NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRH  271 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las  271 (330)
                       |||+=|-|-||.. +|++|+-|+|-..  .|+++-=.|.=-+|||.+ +.-+++|+|-+..-++
T Consensus       411 -SGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~  472 (559)
T KOG1334|consen  411 -SGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERAT  472 (559)
T ss_pred             -ecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcccccc
Confidence             9999999999976 7899999998655  899999999999999987 7789999996654443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.55  E-value=0.0026  Score=64.33  Aligned_cols=119  Identities=8%  Similarity=-0.031  Sum_probs=60.9

Q ss_pred             CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eec
Q psy682           51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTH  129 (330)
Q Consensus        51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~  129 (330)
                      .+.++...|||||+.|+..+              ..+....|.+|+.+++.........    .......+|||++ ++.
T Consensus       217 ~~~~~~p~wSPDG~~La~~s--------------~~~g~~~L~~~dl~tg~~~~lt~~~----g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVS--------------FENRKAEIFVQDIYTQVREKVTSFP----GINGAPRFSPDGKKLAL  278 (448)
T ss_pred             CCcccCceECCCCCEEEEEE--------------ecCCCcEEEEEECCCCCeEEecCCC----CCcCCeeECCCCCEEEE
Confidence            34556778888887653321              1223345777777665533332111    1234688999999 543


Q ss_pred             c-CCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEE-eeeccccc
Q psy682          130 P-TSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFRE-PFTTMYLA  187 (330)
Q Consensus       130 ~-s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl-~w~~~~g~  187 (330)
                      . +.++...+....+...-.+.+..+   ....+++|||++|+.++..++...+ -+++++|+
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            2 223322333333322111112111   1356789999997776655555555 13444444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.52  E-value=0.01  Score=58.67  Aligned_cols=37  Identities=16%  Similarity=0.016  Sum_probs=30.2

Q ss_pred             CCCcEEEeecccccccceeecC-------CCceeEEEeCCCCCc
Q psy682            5 DKGIVEVWRTFNLALLYAFPSC-------DSSVRSLALSHDQKY   41 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH-------~~~V~svafSpdg~~   41 (330)
                      .+..|.+||.++++.+..++--       -..-...++||||+.
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence            6789999999999998888642       334558999999997

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.52  E-value=0.0058  Score=59.47  Aligned_cols=224  Identities=13%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             CCcEEEeec--cccccc--ceeecCCCceeEEEeCCCCCcCcceeeee---cCccEEEEEeCCC-CCeeEeeecc-----
Q psy682            6 KGIVEVWRT--FNLALL--YAFPSCDSSVRSLALSHDQKYSPMMFSTV---LDDVCMSLKFPSN-SPICHVTANT-----   72 (330)
Q Consensus         6 d~~V~lW~~--~~g~~l--~tl~gH~~~V~svafSpdg~~~~l~~~~~---~~d~~~~v~Fs~~-~~v~~~~~~~-----   72 (330)
                      .+.|..+++  .+|++.  ... .-...-..++++|++++  |+....   ....|.+.++.++ +.+..+....     
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~--LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRR--LYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSE--EEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCE--EEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            378999988  344432  222 23344456889998877  222221   3457888888887 6665554322     


Q ss_pred             --ceeccCCcEEEEEcC-CcceEEEeCCCCCC-ccc---CCCCCC-------CCCCCCCCccccCCCceeccCCCCCCCc
Q psy682           73 --YVTLHMPSVVTVTAN-HQFAINRWNPDYAA-SIQ---SPSYAE-------TPGSPPGNLPLTLDPILTHPTSNNNAPV  138 (330)
Q Consensus        73 --~~~~~~~~~v~vS~~-~~~tv~lW~~~~~~-~~~---~~~h~~-------~~~~~~~~l~fs~D~~l~~~s~~~~~~~  138 (330)
                        ++.+++++..+..++ ..++|.++..+... +..   ...|.+       +...-+.++.|+||++++..+.-+.+.+
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v  168 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV  168 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence              245555554444444 46667766665421 111   011100       0111223577777777332223333444


Q ss_pred             ceeccCCC---Ccc--ceeee----eeEEEEecCCCeEEEeeccCCeEEEeeecc--cccccccccCCCCcEEEeHHHHH
Q psy682          139 PKRHLGDN---FSQ--KLRVR----HNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLALQEGKFDHPNRLFSSISLAW  207 (330)
Q Consensus       139 ~~~~l~~~---~~~--~~~~~----~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l~~~l~gH~d~ViaSt~~lW  207 (330)
                      +...+...   +..  .+...    ...++|+|||+++++..-.+++|-+ +++.  +|++...-       .       
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v-~~~~~~~g~~~~~~-------~-------  233 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV-FDYDPSDGSLTEIQ-------T-------  233 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE-EEEETTTTEEEEEE-------E-------
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE-EeecccCCceeEEE-------E-------
Confidence            44333221   111  00000    1356677777777777777777777 6654  23221000       0       


Q ss_pred             hhhccCCCcEEEEcccCceeeecC-CCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCC
Q psy682          208 KNCQRDTSDVKVHTTFGDLLRSLD-PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  266 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~~G~ll~tL~-~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG  266 (330)
                                         +.++. +..+......|++||||+.|..+  +.++|..|.+|+
T Consensus       234 -------------------~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  234 -------------------ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             -------------------EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             -------------------eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence                               01110 00110157899999999987666  577899999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310|consensus

Probab=97.47  E-value=0.0015  Score=66.88  Aligned_cols=205  Identities=14%  Similarity=0.207  Sum_probs=113.9

Q ss_pred             CcccCCCcEEEeeccccccccee-ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ||||+|--+.+||...-+++..+ .||.+-|.++.|=|-.                      +.                
T Consensus        66 ~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t----------------------nn----------------  107 (758)
T KOG1310|consen   66 ASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT----------------------NN----------------  107 (758)
T ss_pred             eecCCcceEEeecchhcceeeeeecccccceeEEeeeccC----------------------CC----------------
Confidence            68999999999998876666554 6777666666665521                      11                


Q ss_pred             cEEEEEcCCcceEEEeCCCCC--------CcccC---CCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCC
Q psy682           80 SVVTVTANHQFAINRWNPDYA--------ASIQS---PSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDN  146 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~--------~~~~~---~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~  146 (330)
                       .+.+|+.+|.-||+.+.+..        ...++   .-|+    +.++.++-.|++-  .-+  ++.+-.+++-.+.++
T Consensus       108 -riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht----~rVKria~~p~~Phtfws--asEDGtirQyDiREp  180 (758)
T KOG1310|consen  108 -RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHT----DRVKRIATAPNGPHTFWS--ASEDGTIRQYDIREP  180 (758)
T ss_pred             -eEEEeccCcceEEEEecccccccccccCccchhhhhhhhh----hhhhheecCCCCCceEEE--ecCCcceeeecccCC
Confidence             23588888999999999731        11222   2455    3566788888773  333  333333344444442


Q ss_pred             C--cccee------------eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhcc
Q psy682          147 F--SQKLR------------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQR  212 (330)
Q Consensus       147 ~--~~~~~------------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS  212 (330)
                      -  .+...            +.-.|..++|.-.+.++-|..|.=.|| ++..  +....+.+..-+....- +       
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarL-YD~R--r~lks~~s~~~~~~~pp-~-------  249 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARL-YDRR--RVLKSFRSDGTMNTCPP-K-------  249 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhh-hhhh--hhccCCCCCccccCCCC-c-------
Confidence            1  11111            122588899977776777778988888 7742  22222221111000000 0       


Q ss_pred             CCCcEEEE------cccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEccCCeEEEEeeCCc
Q psy682          213 DTSDVKVH------TTFGDLLRSLDPPSGFASPESVVMSREGV-IVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       213 ~Dgtvkl~------~~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~~~~~~~~~s~nG~  267 (330)
                      .++-|+-+      +.+|.+.+-..      ...-|+|+|+|. +|++.+-..+.+|..|-.
T Consensus       250 ~~~cv~yf~p~hlkn~~gn~~~~~~------~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  250 DCRCVRYFSPGHLKNSQGNLDRYIT------CCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             ccchhheecCccccCccccccccee------eeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            00011111      11222211111      256789999996 678888888888887643

>KOG2139|consensus

Probab=97.45  E-value=0.0025  Score=62.38  Aligned_cols=31  Identities=13%  Similarity=0.043  Sum_probs=17.7

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccc
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLAL  188 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l  188 (330)
                      +....+||-.++++++-|.+|++ |+.++|..
T Consensus       200 smqwn~dgt~l~tAS~gsssi~i-Wdpdtg~~  230 (445)
T KOG2139|consen  200 SMQWNEDGTILVTASFGSSSIMI-WDPDTGQK  230 (445)
T ss_pred             EEEEcCCCCEEeecccCcceEEE-EcCCCCCc
Confidence            33455666555555555666666 66666543

>KOG3914|consensus

Probab=97.32  E-value=0.00093  Score=65.71  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE--eHHHHHhhhccCCCcEEEEcc-cCceeeec
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS--SISLAWKNCQRDTSDVKVHTT-FGDLLRSL  230 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia--St~~lW~~SgS~Dgtvkl~~~-~G~ll~tL  230 (330)
                      ..++++||+++|+.+ -.|.-||+.|--..--...=..||.+.|  ++  .+-.||  |||-|+|+++|+. +|+.|+++
T Consensus       155 ~dVavS~D~~~Iita-DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~Ll--S~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  155 LDVAVSPDDQFIITA-DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLL--SGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             heeeecCCCCEEEEe-cCCceEEEEecCcccchhhhccccHhheeeeeeccCceee--ecCCCCcEEEEecccCCccccc
Confidence            478999999997765 5899999944443222333345899966  22  121222  8999999999975 89999887


Q ss_pred             CC
Q psy682          231 DP  232 (330)
Q Consensus       231 ~~  232 (330)
                      .-
T Consensus       232 dl  233 (390)
T KOG3914|consen  232 DL  233 (390)
T ss_pred             ch
Confidence            63

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.29  E-value=0.0076  Score=60.73  Aligned_cols=174  Identities=10%  Similarity=-0.045  Sum_probs=90.9

Q ss_pred             eEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eec--cCC-CCCCCcceeccCCCCccc---eeeeeeEEEEecC
Q psy682           91 AINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTH--PTS-NNNAPVPKRHLGDNFSQK---LRVRHNCFVTTVD  163 (330)
Q Consensus        91 tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~--~s~-~~~~~~~~~~l~~~~~~~---~~~~~~~~~~spD  163 (330)
                      .+.+.+.+|...+++....+    ...+-.+||||+ ++.  .+. ++...++...+.+.-.+.   +.+.....++|||
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~----~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHS----LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPR  241 (428)
T ss_pred             eEEEEcCCCCCceEcccCCC----CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCC
Confidence            34455556666655543332    344568999986 321  122 222334444443221111   1222346779999


Q ss_pred             CCeEEEeecc----CCeEEEeeeccc---ccccccccCCCCc----EEEe--HHHHHhhhccCCCcEEEEcc----cCce
Q psy682          164 SRFLLACGFW----DNSFREPFTTMY---LALQEGKFDHPNR----LFSS--ISLAWKNCQRDTSDVKVHTT----FGDL  226 (330)
Q Consensus       164 g~~i~asg~~----D~tirl~w~~~~---g~l~~~l~gH~d~----ViaS--t~~lW~~SgS~Dgtvkl~~~----~G~l  226 (330)
                      |+.|+.+...    |.-+.+ |++..   |+..+...++...    .++.  ..+++  ....+|...||..    .|..
T Consensus       242 G~~Laf~s~~~g~~di~~~~-~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf--~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQS-FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVF--VSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCEEEEEECCCCCcceeEEE-eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEE--EECCCCCceEEEEECcccccc
Confidence            9997765533    333444 77654   3333333222211    1222  11121  2234676677642    2444


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeeecc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las~~  273 (330)
                      .+.|..+.+  .+...++||||+.||...    ...|..|.++|.....+.
T Consensus       319 ~~~lt~~~~--~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt  367 (428)
T PRK01029        319 PRLLTKKYR--NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT  367 (428)
T ss_pred             eEEeccCCC--CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence            555665544  678899999999888752    235777777666555444

>KOG1273|consensus

Probab=97.27  E-value=0.003  Score=61.01  Aligned_cols=186  Identities=8%  Similarity=0.058  Sum_probs=108.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccc------e
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTY------V   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~------~   74 (330)
                      +|+|.|..|++||+..|.+++.+. -.+.||.+.|.|-.+-.-+ .....+. -..+.|++ +.-.++...+.      +
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~v-a~~~~~s-p~vi~~s~-~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCV-ATIMEES-PVVIDFSD-PKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEE-EEEecCC-cEEEEecC-CceeeccCCCcccccccc
Confidence            478999999999999999988876 4678999999985443111 1112222 23445553 11111111111      1


Q ss_pred             ---eccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc-ceeccCCCCcc
Q psy682           75 ---TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV-PKRHLGDNFSQ  149 (330)
Q Consensus        75 ---~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~-~~~~l~~~~~~  149 (330)
                         .+..-+..+.+++.-+-+...+........+..-+  .-...+.+-|+..|. ++.   +.++.+ +...+.+...+
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~~g~~lii---NtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSRKGRFLII---NTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEeccCcEEEE---ecCCceEEEEehhhhccc
Confidence               24445556677777776777766554422221111  112466788888888 553   222222 22222211111


Q ss_pred             ----ceee-e----------eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC
Q psy682          150 ----KLRV-R----------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP  196 (330)
Q Consensus       150 ----~~~~-~----------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~  196 (330)
                          .++. +          -++..||-||.|+.|+...-..+-+ |....|.|++.|.|-.
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI-WE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI-WEKSIGSLVKILHGTK  292 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE-EecCCcceeeeecCCc
Confidence                1110 0          1466799999998887777778888 9999999999999877

>KOG4497|consensus

Probab=97.27  E-value=0.0078  Score=58.53  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      ..|+.|.+|++..-+--.....-++.+-++.+||||+.                                        ++
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrh----------------------------------------iL  107 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRH----------------------------------------IL  107 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCCcceeeeECCCcce----------------------------------------Ee
Confidence            46788999988654444445667777888888888866                                        35


Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceec
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTH  129 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~  129 (330)
                      -+...+.-|..|..++...--. .|   +...++.++|.|||++.+
T Consensus       108 ~tseF~lriTVWSL~t~~~~~~-~~---pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen  108 LTSEFDLRITVWSLNTQKGYLL-PH---PKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             eeecceeEEEEEEeccceeEEe-cc---cccCceeEEECCCCceee
Confidence            6667777788888865431111 11   123457789999999553

>KOG1064|consensus

Probab=97.20  E-value=0.0018  Score=73.63  Aligned_cols=175  Identities=11%  Similarity=0.077  Sum_probs=100.4

Q ss_pred             CcccCCCcEEEeeccccccccee-ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +||+.||.||+|.--.|+.+..+ .+-.+.|....|+.+|.-                                      
T Consensus      2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk-------------------------------------- 2265 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK-------------------------------------- 2265 (2439)
T ss_pred             EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc--------------------------------------
Confidence            47788888888877666665554 222255666666665555                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCC-CCcceeccCCCCccceeee----
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN-APVPKRHLGDNFSQKLRVR----  154 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~-~~~~~~~l~~~~~~~~~~~----  154 (330)
                         -..++.|+-+-+|........+-.-|.....    -|.|---. ++++..+++ ..+-.|..-.+... -.+|    
T Consensus      2266 ---~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~----Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~-s~v~~~H~ 2336 (2439)
T KOG1064|consen 2266 ---FGIVDGDGDLSLWQASPKPYTSWQCHNKALS----DFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMN-SLVHTCHD 2336 (2439)
T ss_pred             ---eeeeccCCceeecccCCcceeccccCCcccc----ceeeeehh-hhccccCCCCCcccchhcccCccc-ceeeeecC
Confidence               1445667778999986333333334543222    36665422 222211111 11112221111000 1111    


Q ss_pred             --eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe-HHHHHhhhccCCCcEEEEcccC-ceeeec
Q psy682          155 --HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS-ISLAWKNCQRDTSDVKVHTTFG-DLLRSL  230 (330)
Q Consensus       155 --~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~~G-~ll~tL  230 (330)
                        ..|.++-|..|.||++| .++-+++ |++...+|++++..    +..- ++.    +||..|++|||..++ .+++++
T Consensus      2337 ~gaT~l~~~P~~qllisgg-r~G~v~l-~D~rqrql~h~~~~----~~~~~~f~----~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGG-RKGEVCL-FDIRQRQLRHTFQA----LDTREYFV----TGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CCceEEEEcCcceEEEecC-CcCcEEE-eehHHHHHHHHhhh----hhhhheee----ccCcccceEEEEccccchhhcC
Confidence              25888999999866655 8999999 99988888776643    1100 111    899999999998754 677777


Q ss_pred             CC
Q psy682          231 DP  232 (330)
Q Consensus       231 ~~  232 (330)
                      .+
T Consensus      2407 p~ 2408 (2439)
T KOG1064|consen 2407 PS 2408 (2439)
T ss_pred             ch
Confidence            64

>KOG4190|consensus

Probab=97.18  E-value=0.0034  Score=64.40  Aligned_cols=184  Identities=13%  Similarity=0.122  Sum_probs=112.0

Q ss_pred             CcccCCCcEEEeeccc-cc------ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682            1 MSGGDKGIVEVWRTFN-LA------LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~------~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      +|+|.|+|||||.+.. |.      -..|++.|...|.++.|=.|-+.                                
T Consensus       751 iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--------------------------------  798 (1034)
T KOG4190|consen  751 ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--------------------------------  798 (1034)
T ss_pred             eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--------------------------------
Confidence            4799999999998763 22      45577899999988888766544                                


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCC-cccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS  148 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~  148 (330)
                               +||++  +.|++|++=-+. +.+-   +.|+.  ...+.++.----+. ++-+++-+++++..-+..+.. 
T Consensus       799 ---------i~ScD--~giHlWDPFigr~Laq~~dapk~~a--~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~-  864 (1034)
T KOG4190|consen  799 ---------IASCD--GGIHLWDPFIGRLLAQMEDAPKEGA--GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT-  864 (1034)
T ss_pred             ---------eeecc--CcceeecccccchhHhhhcCcccCC--CceeEecccCcchheeeeccchhhheeeecccccce-
Confidence                     35554  458999984332 2211   22321  11223333211222 333355566665433322211 


Q ss_pred             cceee--------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-e--HHHHHhhhccCCC
Q psy682          149 QKLRV--------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-S--ISLAWKNCQRDTS  215 (330)
Q Consensus       149 ~~~~~--------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-S--t~~lW~~SgS~Dg  215 (330)
                      -.+++        ...|+++.+.|.. ++.|-+.+.|-+ -+..+|+.++....-.-.+  ++ .  ...+   +...|.
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~-LDaR~G~vINswrpmecdllqlaapsdq~L~---~saldH  939 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAI-LDARNGKVINSWRPMECDLLQLAAPSDQALA---QSALDH  939 (1034)
T ss_pred             eeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEE-EecCCCceeccCCcccchhhhhcCchhHHHH---hhcccc
Confidence            11222        2368999999999 566667899988 8888899888776544333  22 2  3333   556688


Q ss_pred             cEEE-Ec-ccCceeeecCCCCC
Q psy682          216 DVKV-HT-TFGDLLRSLDPPSG  235 (330)
Q Consensus       216 tvkl-~~-~~G~ll~tL~~h~~  235 (330)
                      ++-+ |. .+|....+++++..
T Consensus       940 slaVnWhaldgimh~q~kpppe  961 (1034)
T KOG4190|consen  940 SLAVNWHALDGIMHLQDKPPPE  961 (1034)
T ss_pred             eeEeeehhcCCeeeeccCCCCc
Confidence            8888 75 58888888887544

>KOG2315|consensus

Probab=97.16  E-value=0.015  Score=59.63  Aligned_cols=216  Identities=11%  Similarity=0.014  Sum_probs=121.8

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc------Cccee----------eeecCccEEEEEeCCCCCeeEeee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------SPMMF----------STVLDDVCMSLKFPSNSPICHVTA   70 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------~~l~~----------~~~~~d~~~~v~Fs~~~~v~~~~~   70 (330)
                      -.+++|++.++.+...++.-...-|...||+|..+      +-+.|          ...|...+....+||..+--+|+.
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             CceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence            35789999998777777655555589999999888      11222          235667778888888765555553


Q ss_pred             ccce--------------------------------------eccCCcEEEEEcCCcc---------eEEEeCCCCCCcc
Q psy682           71 NTYV--------------------------------------TLHMPSVVTVTANHQF---------AINRWNPDYAASI  103 (330)
Q Consensus        71 ~~~~--------------------------------------~~~~~~~v~vS~~~~~---------tv~lW~~~~~~~~  103 (330)
                      .+-.                                      ++...-+++++.+-|.         ++++-..+     
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----  259 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----  259 (566)
T ss_pred             EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----
Confidence            2221                                      1111233344444333         22222222     


Q ss_pred             cCCCCCCCC----CCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeeeeEEEEecCCCeEEEeeccC--C
Q psy682          104 QSPSYAETP----GSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRHNCFVTTVDSRFLLACGFWD--N  175 (330)
Q Consensus       104 ~~~~h~~~~----~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~spDg~~i~asg~~D--~  175 (330)
                         |++.+|    ..++..+.++++++ .++.-+=...+...-.+.. +.-.--++--|+.-|+|-|.+|+.+|+-.  +
T Consensus       260 ---g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  260 ---GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPG  336 (566)
T ss_pred             ---CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCC
Confidence               222211    13666788888886 4432221222222222221 11111122236777899998888888522  3


Q ss_pred             eEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-
Q psy682          176 SFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-  254 (330)
Q Consensus       176 tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-  254 (330)
                      .+-+ |++.+-|++..+                                      +..    --.-+.+||||+.++++ 
T Consensus       337 ~mEv-wDv~n~K~i~~~--------------------------------------~a~----~tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  337 DMEV-WDVPNRKLIAKF--------------------------------------KAA----NTTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             ceEE-Eeccchhhcccc--------------------------------------ccC----CceEEEEcCCCcEEEEEe
Confidence            4667 777654444322                                      211    12456889999999888 


Q ss_pred             -c-----CCeEEEEeeCCceeeecc
Q psy682          255 -E-----RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       255 -~-----~~~~~~~s~nG~~las~~  273 (330)
                       +     |..+.+|-..|++|...+
T Consensus       374 TaPRlrvdNg~KiwhytG~~l~~~~  398 (566)
T KOG2315|consen  374 TAPRLRVDNGIKIWHYTGSLLHEKM  398 (566)
T ss_pred             ccccEEecCCeEEEEecCceeehhh
Confidence             2     667899999999887654

>KOG2111|consensus

Probab=97.15  E-value=0.0026  Score=61.30  Aligned_cols=30  Identities=17%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeeccc
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY  185 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~  185 (330)
                      .-.|++||||+++ ++++|.-+|+-+ |.+..
T Consensus       228 ~iy~iaFSp~~s~-LavsSdKgTlHi-F~l~~  257 (346)
T KOG2111|consen  228 DIYCIAFSPNSSW-LAVSSDKGTLHI-FSLRD  257 (346)
T ss_pred             eEEEEEeCCCccE-EEEEcCCCeEEE-EEeec
Confidence            4479999999999 666677889999 99864

>KOG3914|consensus

Probab=97.14  E-value=0.0036  Score=61.69  Aligned_cols=105  Identities=14%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV  153 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~  153 (330)
                      .-....++...++....+..|..+-...+-..||-    +...-+.++||++ +.  +++-+.+++.-+...    .+-+
T Consensus       117 ~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv----Sml~dVavS~D~~~Ii--taDRDEkIRvs~ypa----~f~I  186 (390)
T KOG3914|consen  117 REDTSVLVADKAGDVYSFDILSADSGRCEPILGHV----SMLLDVAVSPDDQFII--TADRDEKIRVSRYPA----TFVI  186 (390)
T ss_pred             eccceEEEEeecCCceeeeeecccccCcchhhhhh----hhhheeeecCCCCEEE--EecCCceEEEEecCc----ccch
Confidence            33444567788899999999998754455566997    4566799999999 44  367766665544332    2333


Q ss_pred             eeeE---------EEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          154 RHNC---------FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       154 ~~~~---------~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      .+.|         +++. |++.|+ +|+-|+++|+ |+..+|+.+.++
T Consensus       187 esfclGH~eFVS~isl~-~~~~Ll-S~sGD~tlr~-Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  187 ESFCLGHKEFVSTISLT-DNYLLL-SGSGDKTLRL-WDITSGKLLDTC  231 (390)
T ss_pred             hhhccccHhheeeeeec-cCceee-ecCCCCcEEE-EecccCCccccc
Confidence            3322         2233 455545 4557999999 999999988554

>KOG2321|consensus

Probab=97.13  E-value=0.0049  Score=63.43  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=83.1

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC------c-----E----EEe---HHHHHhhhccCCCcE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN------R-----L----FSS---ISLAWKNCQRDTSDV  217 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d------~-----V----iaS---t~~lW~~SgS~Dgtv  217 (330)
                      +++.+++-... ++||.-|+.+.. |+..+-....++.-...      .     |    |.-   ++-    .|..+|.|
T Consensus       179 N~v~in~~hgL-la~Gt~~g~VEf-wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a----VGts~G~v  252 (703)
T KOG2321|consen  179 NVVSINEEHGL-LACGTEDGVVEF-WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA----VGTSTGSV  252 (703)
T ss_pred             eeeeecCccce-EEecccCceEEE-ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE----eeccCCcE
Confidence            67778887766 888989999999 99865544444433322      1     1    000   222    58889999


Q ss_pred             EEEcccCceeeecCCCCCCCCCcEEEeCCC--ccEEEEccCCeEEEEe-eCCceeeeccCccccccccccccchh
Q psy682          218 KVHTTFGDLLRSLDPPSGFASPESVVMSRE--GVIVVNYERGHIAAFT-MNGNRLRHESHNDNLQELIPELFFLP  289 (330)
Q Consensus       218 kl~~~~G~ll~tL~~h~~~~~v~~v~fS~d--G~~l~s~~~~~~~~~s-~nG~~las~~~~~dVkELipef~~~p  289 (330)
                      .||++.-.----.+.|....++..+.|-+.  +..|+|.++..+.+|. .+|+..++.+...+++    +|+.+|
T Consensus       253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lN----D~C~~p  323 (703)
T KOG2321|consen  253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLN----DFCFVP  323 (703)
T ss_pred             EEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcC----ceeeec
Confidence            999864222122334555346777777554  6789999999999995 5699999998776655    455555

>KOG1188|consensus

Probab=97.11  E-value=0.0016  Score=63.22  Aligned_cols=111  Identities=18%  Similarity=0.165  Sum_probs=78.4

Q ss_pred             EEEeeccCCeEEEeeecccccccccccCCCCcE----EEe----HHHHHhhhccCCCcEEEEcc--cCc-eeeecCCCCC
Q psy682          167 LLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS----ISLAWKNCQRDTSDVKVHTT--FGD-LLRSLDPPSG  235 (330)
Q Consensus       167 i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~--~G~-ll~tL~~h~~  235 (330)
                      .++.+.+.++||+ ++..+|++++.+.+|++.+    |++    -..+   |+|.|||||+|+.  .++ -.+..+.+++
T Consensus        42 ~vav~lSngsv~l-yd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~---s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   42 AVAVSLSNGSVRL-YDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVI---SCSSDGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eEEEEecCCeEEE-EeccchhhhheecCCCCcccceEEecCCCCCeeE---EeccCCeEEEEEeecchhhhheeccCCCC
Confidence            3667788999999 9999999999999999987    443    2223   8999999999975  233 3444555553


Q ss_pred             CCCCcEEEeCCCccEEEEc-----cCCeEEEEeeC--Cceeeec--cCcccccccc
Q psy682          236 FASPESVVMSREGVIVVNY-----ERGHIAAFTMN--GNRLRHE--SHNDNLQELI  282 (330)
Q Consensus       236 ~~~v~~v~fS~dG~~l~s~-----~~~~~~~~s~n--G~~las~--~~~~dVkELi  282 (330)
                       .+-.+++..-.+++++.|     ++-.+++|...  -++|+.+  +++++|..|-
T Consensus       118 -~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr  172 (376)
T KOG1188|consen  118 -TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR  172 (376)
T ss_pred             -CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence             145566666688999998     34457777543  3335555  3677788774

>KOG1240|consensus

Probab=97.11  E-value=0.011  Score=65.50  Aligned_cols=38  Identities=8%  Similarity=-0.094  Sum_probs=29.2

Q ss_pred             eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       153 ~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      +...+++++|-+.+ ++.|..-|.+-+ |++..+.++...
T Consensus      1196 G~vTSi~idp~~~W-lviGts~G~l~l-WDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNW-LVIGTSRGQLVL-WDLRFRVPILSW 1233 (1431)
T ss_pred             cceeEEEecCCceE-EEEecCCceEEE-EEeecCceeecc
Confidence            34467889999998 666778888999 999877666544

>KOG1354|consensus

Probab=97.05  E-value=0.0028  Score=61.73  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             CCcEEEeCCCccEEEEccCCeEEEEe--eCCceeeeccCccccccccccccch
Q psy682          238 SPESVVMSREGVIVVNYERGHIAAFT--MNGNRLRHESHNDNLQELIPELFFL  288 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~~~~~~~~s--~nG~~las~~~~~dVkELipef~~~  288 (330)
                      +|+.|.||+.|..+++-+--++.+|.  ++.+.+.+...|+..++=+-.+|-.
T Consensus       274 SISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  274 SISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             hhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence            78999999999999999999999996  5788999988888777655555543

>KOG4190|consensus

Probab=97.01  E-value=0.0014  Score=67.18  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC---CCCc-EE------Ee-HHHHHhhhccCCCcEEEEcc-c
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD---HPNR-LF------SS-ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g---H~d~-Vi------aS-t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                      +.+-|-.|-++|++   .|+.|.+ |+..-|+++....+   |... +|      .+ .+++   -.|...|||+.+. .
T Consensus       788 ~~igfL~~lr~i~S---cD~giHl-WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA---gcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  788 HDIGFLADLRSIAS---CDGGIHL-WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA---GCSAESTVKLFDARS  860 (1034)
T ss_pred             cceeeeeccceeee---ccCccee-ecccccchhHhhhcCcccCCCceeEecccCcchheee---eccchhhheeeeccc
Confidence            35557778888543   4899999 99877876542222   2211 11      11 2222   2377889999764 5


Q ss_pred             CceeeecC-----CCCCCCCCcEEEeCCCccEEEEc-cCCeE-EEEeeCCceeeecc
Q psy682          224 GDLLRSLD-----PPSGFASPESVVMSREGVIVVNY-ERGHI-AAFTMNGNRLRHES  273 (330)
Q Consensus       224 G~ll~tL~-----~h~~~~~v~~v~fS~dG~~l~s~-~~~~~-~~~s~nG~~las~~  273 (330)
                      +.....++     ++.+  .+++++.-+.|..+|.+ +.|.+ .+-..||+.+.+..
T Consensus       861 ce~~~E~kVcna~~Pna--~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  861 CEWTCELKVCNAPGPNA--LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             ccceeeEEeccCCCCch--heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            66655554     3444  78999999999999998 77765 55688999888765

>KOG0309|consensus

Probab=96.90  E-value=0.0028  Score=66.80  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=82.0

Q ss_pred             ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc
Q psy682           24 PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI  103 (330)
Q Consensus        24 ~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~  103 (330)
                      ..|...||.+|-|.+..+  -..+.||...+..+.|.|+-|.                |+++++-|..|+.|+....   
T Consensus        89 s~qkaiiwnlA~ss~~aI--ef~lhghsraitd~n~~~q~pd----------------Vlatcsvdt~vh~wd~rSp---  147 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSSSNAI--EFVLHGHSRAITDINFNPQHPD----------------VLATCSVDTYVHAWDMRSP---  147 (1081)
T ss_pred             CcchhhhhhhhcCCccce--EEEEecCccceeccccCCCCCc----------------ceeeccccccceeeeccCC---
Confidence            556666677777666444  2335699999999999999997                5899999999999999432   


Q ss_pred             cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEec-CCCeEEEeeccCCeEEEeee
Q psy682          104 QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV-DSRFLLACGFWDNSFREPFT  182 (330)
Q Consensus       104 ~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~i~asg~~D~tirl~w~  182 (330)
                          |.               |.+.         ...|+-+.          ..|..+- |+.. +|+. --+-|++ |+
T Consensus       148 ----~~---------------p~ys---------~~~w~s~a----------sqVkwnyk~p~v-lass-hg~~i~v-wd  186 (1081)
T KOG0309|consen  148 ----HR---------------PFYS---------TSSWRSAA----------SQVKWNYKDPNV-LASS-HGNDIFV-WD  186 (1081)
T ss_pred             ----Cc---------------ceee---------eecccccC----------ceeeecccCcch-hhhc-cCCceEE-Ee
Confidence                10               0111         11222111          1122221 3333 3333 2566888 99


Q ss_pred             cccc-cccccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEc
Q psy682          183 TMYL-ALQEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       183 ~~~g-~l~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~  221 (330)
                      +..| ..+..+.+|...|    +-.  --.+|  +.+.|||||.|+
T Consensus       187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~--s~~~d~tvkfw~  230 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM--SSSNDGTVKFWD  230 (1081)
T ss_pred             ccCCCcceEEecccceeeehHHHhhhhhhhhc--ccCCCCceeeec
Confidence            8765 4677788887766    111  11222  678888888886

>KOG4547|consensus

Probab=96.79  E-value=0.0019  Score=66.06  Aligned_cols=94  Identities=18%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      |+++|+.|-+|+.+.++.++.+++-...+.++.++|||.+                                        
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~----------------------------------------  158 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI----------------------------------------  158 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE----------------------------------------
Confidence            6789999999999999999999999999999999999888                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC-----CceeccCCCCCCCcceec
Q psy682           82 VTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD-----PILTHPTSNNNAPVPKRH  142 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D-----~~l~~~s~~~~~~~~~~~  142 (330)
                       +++|++.  |++|+....+ +++++||.+    ++.+++|.-+     |++...++........|.
T Consensus       159 -l~~as~~--ik~~~~~~kevv~~ftgh~s----~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  159 -LLTASRQ--IKVLDIETKEVVITFTGHGS----PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             -EEeccce--EEEEEccCceEEEEecCCCc----ceEEEEEEEeccccccceeeeccccccceeEEE
Confidence             5888887  8999997666 788889984    6777888877     554333444444444333

>KOG0290|consensus

Probab=96.77  E-value=0.029  Score=53.80  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE----eH--HHH-Hhh-------h-ccCCCcEEEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS----SI--SLA-WKN-------C-QRDTSDVKVH  220 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via----St--~~l-W~~-------S-gS~Dgtvkl~  220 (330)
                      ..++|.-+|.-++|+-+.|+++|+ |++...       .|+..|.-    ++  .+| |+-       + +-....|.|-
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRm-FDLR~l-------eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRM-FDLRSL-------EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEE-EEeccc-------ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            457788888888888889999999 999532       34333310    00  000 111       0 1111234444


Q ss_pred             cc--cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeC
Q psy682          221 TT--FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       221 ~~--~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~n  265 (330)
                      +.  -+..+.+|++|.+  .|+.|++-|.. ..|++++ |...-.|.++
T Consensus       272 DiR~P~tpva~L~~H~a--~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQA--SVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             EecCCCcceehhhcCcc--cccceEecCCCCceeeecCCcceEEEEecc
Confidence            43  4888999999999  99999999984 4666665 4455666644

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.75  E-value=0.041  Score=52.37  Aligned_cols=48  Identities=15%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             CCcEEEeCCCccEEEEcc-CCeEEEEeeCCce-eeeccCc--cccccccccc
Q psy682          238 SPESVVMSREGVIVVNYE-RGHIAAFTMNGNR-LRHESHN--DNLQELIPEL  285 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~-las~~~~--~dVkELipef  285 (330)
                      .|..+++||||+.||+.. .|.|.+|.+-.-. .++...+  ....|+=|||
T Consensus       231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg~~e~np~~  282 (282)
T PF15492_consen  231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPGYNEINPDW  282 (282)
T ss_pred             ceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCCCCccCCCCC
Confidence            799999999999999996 9999999866543 3444433  2355555553

>KOG4227|consensus

Probab=96.69  E-value=0.005  Score=60.95  Aligned_cols=106  Identities=15%  Similarity=0.025  Sum_probs=73.0

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccc------cccccccC-CCCcEEE----e--HHHHHhhhccCCCcEEEEc
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL------ALQEGKFD-HPNRLFS----S--ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g------~l~~~l~g-H~d~Via----S--t~~lW~~SgS~Dgtvkl~~  221 (330)
                      .+++.||.++++ +++|.-|...++ |+++..      |.++.... |..-||.    +  +...   ||..||||++|+
T Consensus        59 iNAlqFS~N~~~-L~SGGDD~~~~~-W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~---SG~~~~~VI~HD  133 (609)
T KOG4227|consen   59 INALQFSHNDRF-LASGGDDMHGRV-WNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY---SGERWGTVIKHD  133 (609)
T ss_pred             cceeeeccCCeE-EeecCCcceeee-echHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe---cCCCcceeEeee
Confidence            367789999999 566668999999 999753      44543332 2233421    2  4433   999999999998


Q ss_pred             c-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccC-CeEEEEeeC
Q psy682          222 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYER-GHIAAFTMN  265 (330)
Q Consensus       222 ~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~-~~~~~~s~n  265 (330)
                      . +-+-|..+....+.+.|+.+..+|-..++|+.++ +.+..|.+.
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            7 4555666555443468999999999999988864 444445443

>KOG1272|consensus

Probab=96.68  E-value=0.0064  Score=61.19  Aligned_cols=99  Identities=9%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |+++..|-.+.=|+..|++...+.--.+.+..++=+|-                        -.                
T Consensus       225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------------------------Na----------------  264 (545)
T KOG1272|consen  225 VAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------------------------NA----------------  264 (545)
T ss_pred             eecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------------------------cc----------------
Confidence            46677777777777777777777666666655555552                        11                


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                       |+-.+...++|-+|.++-.+..-                     ++++            + .+        -..++||
T Consensus       265 -Vih~GhsnGtVSlWSP~skePLv---------------------KiLc------------H-~g--------~V~siAv  301 (545)
T KOG1272|consen  265 -VIHLGHSNGTVSLWSPNSKEPLV---------------------KILC------------H-RG--------PVSSIAV  301 (545)
T ss_pred             -eEEEcCCCceEEecCCCCcchHH---------------------HHHh------------c-CC--------CcceEEE
Confidence             34777888999999994431000                     1111            1 11        1358899


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecc
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      .++|+|++++| .|+.+|| |++.
T Consensus       302 ~~~G~YMaTtG-~Dr~~kI-WDlR  323 (545)
T KOG1272|consen  302 DRGGRYMATTG-LDRKVKI-WDLR  323 (545)
T ss_pred             CCCCcEEeecc-cccceeE-eeec
Confidence            99999977777 8999999 9995

>KOG0290|consensus

Probab=96.53  E-value=0.019  Score=55.02  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=84.1

Q ss_pred             cccCCCcEEEeecccccc---cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            2 SGGDKGIVEVWRTFNLAL---LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~---l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      +.|-|-|-.+|++..|..   -..|-+|...|.+|||+-+|.-                                     
T Consensus       168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-------------------------------------  210 (364)
T KOG0290|consen  168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-------------------------------------  210 (364)
T ss_pred             eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-------------------------------------
Confidence            567889999999988643   4458899999999999986655                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC---CCc-eeccCCCCCCCcceeccC--CCCcccee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL---DPI-LTHPTSNNNAPVPKRHLG--DNFSQKLR  152 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~---D~~-l~~~s~~~~~~~~~~~l~--~~~~~~~~  152 (330)
                         +.||.+.|+.|++.++.--+..|.. |.+. .....-+.++.   ||. ||+-..++.. +....+.  ...--+++
T Consensus       211 ---~FASvgaDGSvRmFDLR~leHSTII-YE~p-~~~~pLlRLswnkqDpnymATf~~dS~~-V~iLDiR~P~tpva~L~  284 (364)
T KOG0290|consen  211 ---VFASVGADGSVRMFDLRSLEHSTII-YEDP-SPSTPLLRLSWNKQDPNYMATFAMDSNK-VVILDIRVPCTPVARLR  284 (364)
T ss_pred             ---eEEEecCCCcEEEEEecccccceEE-ecCC-CCCCcceeeccCcCCchHHhhhhcCCce-EEEEEecCCCcceehhh
Confidence               4588888888999998655544432 1100 00112233433   343 4432333322 2222222  21223444


Q ss_pred             eee---eEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          153 VRH---NCFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       153 ~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      .|.   +.++..|-++--|.++.-|.-.-+ |++.
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qali-WDl~  318 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALI-WDLQ  318 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEE-Eecc
Confidence            453   677888887765666656777777 9985

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.51  E-value=0.049  Score=61.07  Aligned_cols=31  Identities=6%  Similarity=-0.035  Sum_probs=25.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL  188 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l  188 (330)
                      ..+++++||+. +++-+.+++||+ |+++++++
T Consensus       862 ~GIavd~dG~l-yVaDt~Nn~Irv-id~~~~~~  892 (1057)
T PLN02919        862 AGLALGENGRL-FVADTNNSLIRY-LDLNKGEA  892 (1057)
T ss_pred             eEEEEeCCCCE-EEEECCCCEEEE-EECCCCcc
Confidence            46789999986 555668999999 99988765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.47  E-value=0.048  Score=53.87  Aligned_cols=36  Identities=17%  Similarity=-0.065  Sum_probs=29.7

Q ss_pred             eEEEEecCCCeEEEeecc-CCeEEEeeecccccccccc
Q psy682          156 NCFVTTVDSRFLLACGFW-DNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~-D~tirl~w~~~~g~l~~~l  192 (330)
                      ..|++|||||+|+++--. +.++-+ .++++++.+..+
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~V-vD~~~~kvv~ei  144 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGV-VDLEGKAFVRMM  144 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEE-EECCCCcEEEEE
Confidence            578899999999987744 888999 999888876544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.47  E-value=0.015  Score=57.59  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=28.4

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY   41 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~   41 (330)
                      ++.||.|.++|+.+++.+.+++.-.. -.++++||||++
T Consensus        54 ~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~   91 (369)
T PF02239_consen   54 ANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKY   91 (369)
T ss_dssp             EETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTE
T ss_pred             EcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCE
Confidence            35688999999999998888876554 468999998888

...

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.42  E-value=0.17  Score=51.47  Aligned_cols=106  Identities=10%  Similarity=0.070  Sum_probs=71.1

Q ss_pred             cccCCC-cEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            2 SGGDKG-IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         2 sgs~d~-~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      .|..|| .+-+++..+ -+.+.+.+.-+-|.+|+.||||+.                  +.-+.-....+-+.....+||
T Consensus       376 igt~dgD~l~iyd~~~-~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         376 IGTNDGDKLGIYDKDG-GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             EeccCCceEEEEecCC-ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence            466777 788998854 556788899999999999999995                  111111233445677889999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc---ccCCCCCCCCCCCCCCccccCCCcee
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPILT  128 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~---~~~~~h~~~~~~~~~~l~fs~D~~l~  128 (330)
                      +.+++.+-.       .+.+      ...||+.+++++.+   .+-.+|       -++=+|-||++++
T Consensus       455 sr~iAYafP-------~gy~------tq~Iklydm~~~Kiy~vTT~ta~-------DfsPaFD~d~ryL  503 (668)
T COG4946         455 SRWIAYAFP-------EGYY------TQSIKLYDMDGGKIYDVTTPTAY-------DFSPAFDPDGRYL  503 (668)
T ss_pred             ceeEEEecC-------ccee------eeeEEEEecCCCeEEEecCCccc-------ccCcccCCCCcEE
Confidence            999876622       2222      34588888877542   222244       3567888999833

>KOG1334|consensus

Probab=96.39  E-value=0.023  Score=57.60  Aligned_cols=240  Identities=13%  Similarity=0.078  Sum_probs=136.1

Q ss_pred             ccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           19 LLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +..-|.+|.+.|+.|.|+..|..                   ..+.|..||...|.+-||-|++-..             
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-------------  200 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-------------  200 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-------------
Confidence            44557889999999999988877                   2234556777788888887764431             


Q ss_pred             cEEEEEcCCcceEEEeCCC---CCC-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCC------
Q psy682           80 SVVTVTANHQFAINRWNPD---YAA-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNF------  147 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~---~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~------  147 (330)
                        -+|++++|+.|+.=...   |.+ .+....|.+    ++.-+++.|+-.  +.+++.++.+....++...+-      
T Consensus       201 --ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g----~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  201 --TIVTSSRDGQVRVSEILETGYVENTKRLAPHEG----PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             --CceeccccCceeeeeeccccceecceecccccC----ccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence              24777788777655442   222 223335654    444455555444  333233333332222222221      


Q ss_pred             --ccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc------ccccccCC----CCcE-E----Ee---HHHHH
Q psy682          148 --SQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA------LQEGKFDH----PNRL-F----SS---ISLAW  207 (330)
Q Consensus       148 --~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~------l~~~l~gH----~d~V-i----aS---t~~lW  207 (330)
                        .....+.-+.+++.|-..+.++.|..|.=.|+ ++...-.      .+..+..|    .+.| |    .|   +.+| 
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv-YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-  352 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV-YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-  352 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhh-hcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-
Confidence              11122344577788888766777778988888 6653211      12222222    2223 1    11   3333 


Q ss_pred             hhhccCCCcEEEEcc---cC----------ceeee-cCCCCCCCCCcEEEe-CCCccEEEEcc-CCeEEEEeeCCc-eee
Q psy682          208 KNCQRDTSDVKVHTT---FG----------DLLRS-LDPPSGFASPESVVM-SREGVIVVNYE-RGHIAAFTMNGN-RLR  270 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~---~G----------~ll~t-L~~h~~~~~v~~v~f-S~dG~~l~s~~-~~~~~~~s~nG~-~la  270 (330)
                        +.=.|--|-|.+.   .|          +++.. .+||.++-.|-.|.| .|-..+++||+ =|.|..|..++- +|.
T Consensus       353 --aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  353 --ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             --eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence              2223444555543   46          66666 899988767888876 58999999996 578999976654 444


Q ss_pred             eccCcc-ccccc
Q psy682          271 HESHND-NLQEL  281 (330)
Q Consensus       271 s~~~~~-dVkEL  281 (330)
                      -++.+. -|.||
T Consensus       431 ~MegDr~VVNCL  442 (559)
T KOG1334|consen  431 FMEGDRHVVNCL  442 (559)
T ss_pred             HhhcccceEecc
Confidence            444332 24444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.35  E-value=0.07  Score=53.76  Aligned_cols=35  Identities=11%  Similarity=0.017  Sum_probs=23.7

Q ss_pred             CCcEEEeecccccccceeecCCCceeEEEeCCCCCc
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY   41 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~   41 (330)
                      +..|.++++.+|+... +....+.+...+|||||+.
T Consensus       212 ~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        212 KPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             CCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCE
Confidence            3467888887765433 3334555667889999976

>KOG1587|consensus

Probab=96.23  E-value=0.01  Score=61.85  Aligned_cols=100  Identities=18%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             cccCCCcEEEeecc-cccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            2 SGGDKGIVEVWRTF-NLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         2 sgs~d~~V~lW~~~-~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |++ |.+||||.-. .-.++..+..+.+.|.+||+||-   .|.                                    
T Consensus       416 s~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt---rpa------------------------------------  455 (555)
T KOG1587|consen  416 SVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT---RPA------------------------------------  455 (555)
T ss_pred             eec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc---Cce------------------------------------
Confidence            344 9999999876 66788888889999999999993   333                                    


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT  160 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  160 (330)
                       +.++.+.++.+.+||+....       .              +| .+         .....  .+       -..++.+
T Consensus       456 -vF~~~d~~G~l~iWDLl~~~-------~--------------~P-v~---------s~~~~--~~-------~l~~~~~  494 (555)
T KOG1587|consen  456 -VFATVDGDGNLDIWDLLQDD-------E--------------EP-VL---------SQKVC--SP-------ALTRVRW  494 (555)
T ss_pred             -EEEEEcCCCceehhhhhccc-------c--------------CC-cc---------ccccc--cc-------ccceeec
Confidence             34888899999999994431       0              01 11         00011  11       1246667


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecc
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      ++.|+. +++|..-|++.+ +.+.
T Consensus       495 s~~g~~-lavGd~~G~~~~-~~l~  516 (555)
T KOG1587|consen  495 SPNGKL-LAVGDANGTTHI-LKLS  516 (555)
T ss_pred             CCCCcE-EEEecCCCcEEE-EEcC
Confidence            888988 788888999998 8874

>KOG3881|consensus

Probab=96.14  E-value=0.031  Score=55.25  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=30.8

Q ss_pred             cceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccc
Q psy682          149 QKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE  190 (330)
Q Consensus       149 ~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~  190 (330)
                      +.+.+...++...|..+++++|| -|+-+|| +++++-+|+.
T Consensus       287 kg~tGsirsih~hp~~~~las~G-LDRyvRI-hD~ktrkll~  326 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCG-LDRYVRI-HDIKTRKLLH  326 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeec-cceeEEE-eecccchhhh
Confidence            44566667777889889966665 8999999 9998866654

>KOG2315|consensus

Probab=96.14  E-value=0.031  Score=57.33  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=26.7

Q ss_pred             eeEEEEecCCCeEEEeecc-----CCeEEEeeeccccccc
Q psy682          155 HNCFVTTVDSRFLLACGFW-----DNSFREPFTTMYLALQ  189 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~-----D~tirl~w~~~~g~l~  189 (330)
                      +..|..+|||++++++--.     |+.||| |.. +|+++
T Consensus       357 tt~~eW~PdGe~flTATTaPRlrvdNg~Ki-why-tG~~l  394 (566)
T KOG2315|consen  357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKI-WHY-TGSLL  394 (566)
T ss_pred             ceEEEEcCCCcEEEEEeccccEEecCCeEE-EEe-cCcee
Confidence            3567899999998887766     889999 999 57654

>smart00320 WD40 WD40 repeats

Probab=96.03  E-value=0.015  Score=34.73  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=15.4

Q ss_pred             cccceeecCCCceeEEEeCCCCCc
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY   41 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~   41 (330)
                      +.+.++.+|...|++++|+|+++.
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~   26 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKY   26 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCE
Confidence            445566677777777777765533

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3881|consensus

Probab=95.95  E-value=0.17  Score=50.12  Aligned_cols=109  Identities=13%  Similarity=0.006  Sum_probs=71.2

Q ss_pred             ceeeeeeEEEEecC--CCeEEEeeccCCeEEEeeeccccc-ccccccCCCCcEEEe-------HHHHHhhhccCCCcEEE
Q psy682          150 KLRVRHNCFVTTVD--SRFLLACGFWDNSFREPFTTMYLA-LQEGKFDHPNRLFSS-------ISLAWKNCQRDTSDVKV  219 (330)
Q Consensus       150 ~~~~~~~~~~~spD--g~~i~asg~~D~tirl~w~~~~g~-l~~~l~gH~d~ViaS-------t~~lW~~SgS~Dgtvkl  219 (330)
                      .++++.....|-++  .+. ++++..-+-+|+ +++..++ ++..+ +-..-.+.+       ..++   .|-.-|-+..
T Consensus       200 rVPvW~tdi~Fl~g~~~~~-fat~T~~hqvR~-YDt~~qRRPV~~f-d~~E~~is~~~l~p~gn~Iy---~gn~~g~l~~  273 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYK-FATITRYHQVRL-YDTRHQRRPVAQF-DFLENPISSTGLTPSGNFIY---TGNTKGQLAK  273 (412)
T ss_pred             eeeeeeccceecCCCCCce-EEEEecceeEEE-ecCcccCcceeEe-ccccCcceeeeecCCCcEEE---Eecccchhhe
Confidence            35566667777765  545 555556778999 9987654 22222 111111221       1111   4555556666


Q ss_pred             Ec-ccCceeee-cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          220 HT-TFGDLLRS-LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       220 ~~-~~G~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      ++ +.|+++.. |.|-.+  +|++|..-|.++.|||++ |..++.|...-
T Consensus       274 FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ecccCceeeccccCCccC--CcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            65 46777776 888877  999999999999999998 77789997766

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.91  E-value=0.015  Score=56.20  Aligned_cols=124  Identities=15%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-CcE-------------EEe------HHHHHhhhccC
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-NRL-------------FSS------ISLAWKNCQRD  213 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-d~V-------------iaS------t~~lW~~SgS~  213 (330)
                      |-+++.|..|.++++++  -|-.|.+ |+++       +.+|. ..|             |-|      .+.+.. =.|.
T Consensus       174 hiNSiS~NsD~et~lSa--DdLrINL-Wnl~-------i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm-YSsS  242 (460)
T COG5170         174 HINSISFNSDKETLLSA--DDLRINL-WNLE-------IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM-YSSS  242 (460)
T ss_pred             EeeeeeecCchheeeec--cceeeee-cccc-------ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE-EecC
Confidence            34788899999997765  4788999 9996       22222 112             111      111111 2244


Q ss_pred             CCcEEEEccc-C-------cee-eecCC--CCCC----CCCcEEEeCCCccEEEEccCCeEEEEeeC--CceeeeccCcc
Q psy682          214 TSDVKVHTTF-G-------DLL-RSLDP--PSGF----ASPESVVMSREGVIVVNYERGHIAAFTMN--GNRLRHESHND  276 (330)
Q Consensus       214 Dgtvkl~~~~-G-------~ll-~tL~~--h~~~----~~v~~v~fS~dG~~l~s~~~~~~~~~s~n--G~~las~~~~~  276 (330)
                      -|+|||-+.. .       ++. -++.|  |..+    .++..+.||+.|..|++-+-.++.+|.+|  -+.+.+...|.
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHH
Confidence            5788886532 0       110 11222  1111    37889999999999999999999999765  45677776777


Q ss_pred             ccccccccccch
Q psy682          277 NLQELIPELFFL  288 (330)
Q Consensus       277 dVkELipef~~~  288 (330)
                      +.++-+.+.|-.
T Consensus       323 ~l~~~l~d~YEn  334 (460)
T COG5170         323 DLMDELNDVYEN  334 (460)
T ss_pred             HHHHHHHhhhhc
Confidence            777666665544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.90  E-value=0.13  Score=47.13  Aligned_cols=93  Identities=18%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecc--cccc-----ccccc---CCCCcE-EEeHHHHHhhhccCCCcEEEEccc
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLAL-----QEGKF---DHPNRL-FSSISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l-----~~~l~---gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      .+-++|+||++.|+.+-+..+.|.. ++++  ++++     ...+.   +..|-+ +.+.=.||- +.-..+.|.+.+.+
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v-a~~~~~~I~~~~p~  213 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWR-FDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV-ADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEE-EEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE-EEETTTEEEEEETT
T ss_pred             ccceEECCcchheeecccccceeEE-EeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE-EEcCCCEEEEECCC
Confidence            4678899999988887777777655 4443  2211     11111   123333 223334444 33356678888889


Q ss_pred             CceeeecCCCCCCCCCcEEEeC-CCccEE
Q psy682          224 GDLLRSLDPPSGFASPESVVMS-REGVIV  251 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS-~dG~~l  251 (330)
                      |++++.+.-+..  .+.+++|. ||...|
T Consensus       214 G~~~~~i~~p~~--~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  214 GKLLREIELPVP--RPTNCAFGGPDGKTL  240 (246)
T ss_dssp             SCEEEEEE-SSS--SEEEEEEESTTSSEE
T ss_pred             ccEEEEEcCCCC--CEEEEEEECCCCCEE
Confidence            999999988755  89999994 675544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064|consensus

Probab=95.86  E-value=0.02  Score=65.58  Aligned_cols=78  Identities=10%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeC----------CCCCc--------Ccc--eeeeecCccEEEEEeCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALS----------HDQKY--------SPM--MFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafS----------pdg~~--------~~l--~~~~~~~d~~~~v~Fs~   61 (330)
                      .++.||.+-+|+... +.....+.|.-...+..|=          ||+.-        .++  ...+.|...+..+.|-|
T Consensus      2268 i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred             eeccCCceeecccCC-cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence            467899999999964 7777889999999999994          44433        222  23578999999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      +-|++                 .|+++++-|++|+.
T Consensus      2347 ~~qll-----------------isggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2347 KHQLL-----------------ISGGRKGEVCLFDI 2365 (2439)
T ss_pred             cceEE-----------------EecCCcCcEEEeeh
Confidence            99975                 99999999999998

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.66  E-value=0.7  Score=44.87  Aligned_cols=122  Identities=11%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             EEeCCCCCeeEeee---ccc---------eeccCCcEEEE-EcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC
Q psy682           57 LKFPSNSPICHVTA---NTY---------VTLHMPSVVTV-TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL  123 (330)
Q Consensus        57 v~Fs~~~~v~~~~~---~~~---------~~~~~~~~v~v-S~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~  123 (330)
                      +.+.|||+.+.|+-   .|.         .--|.|+++.+ +.+... +..|-+.-...+-          ....|++..
T Consensus       104 l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~Lp~~~~~l----------SiRHLa~~~  172 (305)
T PF07433_consen  104 LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-LEQVELPPDLHQL----------SIRHLAVDG  172 (305)
T ss_pred             EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-eeeeecCcccccc----------ceeeEEecC
Confidence            44668998888773   222         24456777777 444443 5566552222122          233477888


Q ss_pred             CCceeccC-----CCCCCCcc-eeccCCCC---------ccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc
Q psy682          124 DPILTHPT-----SNNNAPVP-KRHLGDNF---------SQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL  188 (330)
Q Consensus       124 D~~l~~~s-----~~~~~~~~-~~~l~~~~---------~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l  188 (330)
                      ||..+.+.     .....++. ..+.++.+         ...+..+.-+++++.||..+++++=.-+.+-+ |+..+|++
T Consensus       173 ~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~-~d~~tg~~  251 (305)
T PF07433_consen  173 DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV-WDAATGRL  251 (305)
T ss_pred             CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE-EECCCCCE
Confidence            88744321     01111111 11112211         12344555688899999887776656666777 88877777


Q ss_pred             cc
Q psy682          189 QE  190 (330)
Q Consensus       189 ~~  190 (330)
                      +.
T Consensus       252 ~~  253 (305)
T PF07433_consen  252 LG  253 (305)
T ss_pred             ee
Confidence            64

>KOG4497|consensus

Probab=95.61  E-value=0.043  Score=53.50  Aligned_cols=125  Identities=12%  Similarity=0.005  Sum_probs=73.5

Q ss_pred             CccccCCCceeccCCCCCCCcceeccCCCCccceeeee--------eEEEEecCCCeEEEeeccCCeEEEeeeccccccc
Q psy682          118 NLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH--------NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ  189 (330)
Q Consensus       118 ~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~  189 (330)
                      --.|||||++.+  +-+...+..|..     .+++++.        ..+....|+-+|+...|.|+.|.+ |++..-+-.
T Consensus        13 ~c~fSp~g~yiA--s~~~yrlviRd~-----~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqv-wsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIA--SLSRYRLVIRDS-----ETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQV-WSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeee--eeeeeEEEEecc-----chhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEE-EEeecceeE
Confidence            357999999543  222233444443     3455554        246678999999999999999999 999754332


Q ss_pred             ccccCCCCcEEE-e------HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          190 EGKFDHPNRLFS-S------ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       190 ~~l~gH~d~Via-S------t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      -.+..-++.+.+ +      -+.+   ..+-|-.|-+|...-+-..-+..+..  -+-.++|.|||++.+-.+
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~---tseF~lriTVWSL~t~~~~~~~~pK~--~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILL---TSEFDLRITVWSLNTQKGYLLPHPKT--NVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEee---eecceeEEEEEEeccceeEEeccccc--CceeEEECCCCceeeeee
Confidence            222222222211 1      1222   22344455567554333333444444  678899999999887663

>KOG2321|consensus

Probab=95.54  E-value=0.064  Score=55.51  Aligned_cols=111  Identities=14%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--E---EEe-----HHHH-----------------
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L---FSS-----ISLA-----------------  206 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V---iaS-----t~~l-----------------  206 (330)
                      -++.+.+||||||++|+|-.-..||+ +++..-.|  -+..|.|.  |   |.|     .+.|                 
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikv-ydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~  129 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKV-YDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR  129 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEE-EEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence            34678899999999999999999999 99864333  34455443  3   111     1111                 


Q ss_pred             --------------Hhh----hccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          207 --------------WKN----CQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       207 --------------W~~----SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                                    |+-    -||.+---+|...+|++|+.|.--.+  .++.|.+++.-++||+|. ++.+-.|.+.-|
T Consensus       130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecccCceEEEecchhh
Confidence                          000    34444455666668999999987666  899999999999999996 787777777655


Q ss_pred             ee
Q psy682          268 RL  269 (330)
Q Consensus       268 ~l  269 (330)
                      .+
T Consensus       208 sr  209 (703)
T KOG2321|consen  208 SR  209 (703)
T ss_pred             hh
Confidence            44

>KOG1409|consensus

Probab=95.45  E-value=0.19  Score=49.31  Aligned_cols=218  Identities=12%  Similarity=0.082  Sum_probs=122.1

Q ss_pred             cccCCCcEEEee-cccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            2 SGGDKGIVEVWR-TFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         2 sgs~d~~V~lW~-~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ++++|.+||+|- ++.||                ++|+=..       --...|.++.|.++...++++-      ...+
T Consensus        41 ~~s~drtvrv~lkrds~q----------------~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg~------~ngt   91 (404)
T KOG1409|consen   41 SVSEDRTVRVWLKRDSGQ----------------YWPSIYH-------YMPSPCSAMEYVSESRRLYVGQ------DNGT   91 (404)
T ss_pred             EccccceeeeEEeccccc----------------cCchhhh-------hCCCCceEeeeeccceEEEEEE------ecce
Confidence            678899999994 33344                2232111       1123566667777777776662      2233


Q ss_pred             EEEEEcCCcce----EEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeee
Q psy682           81 VVTVTANHQFA----INRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN  156 (330)
Q Consensus        81 ~v~vS~~~~~t----v~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~  156 (330)
                      +-.++.+.|+.    +|.|..          |..    .+..+-|+.-+....  +.+-++...|+-.+ ....+-.+. 
T Consensus        92 vtefs~sedfnkm~~~r~~~~----------h~~----~v~~~if~~~~e~V~--s~~~dk~~~~hc~e-~~~~lg~Y~-  153 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLA----------HQA----RVSAIVFSLTHEWVL--STGKDKQFAWHCTE-SGNRLGGYN-  153 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhh----------hhc----ceeeEEecCCceeEE--EeccccceEEEeec-cCCcccceE-
Confidence            34444444432    244443          432    344455555555332  23333444444322 112222111 


Q ss_pred             EEEEecCCCeEEEeeccCC------eEEEeeecccccccccccCCCCcEEEe------HHHHHhhhccCCCcEEEEcccC
Q psy682          157 CFVTTVDSRFLLACGFWDN------SFREPFTTMYLALQEGKFDHPNRLFSS------ISLAWKNCQRDTSDVKVHTTFG  224 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~------tirl~w~~~~g~l~~~l~gH~d~ViaS------t~~lW~~SgS~Dgtvkl~~~~G  224 (330)
                      -.+...+-++.+.+++-+-      ..|+ ... .-.++.++.||.+.|..-      .+..   ||+.|..|..|+.-|
T Consensus       154 ~~~~~t~~~~d~~~~fvGd~~gqvt~lr~-~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf---Sg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  154 FETPASALQFDALYAFVGDHSGQITMLKL-EQN-GCQLITTFNGHTGEVTCLKWDPGQRLLF---SGASDHSVIMWDIGG  228 (404)
T ss_pred             eeccCCCCceeeEEEEecccccceEEEEE-eec-CCceEEEEcCcccceEEEEEcCCCcEEE---eccccCceEEEeccC
Confidence            1011123444444554222      1344 322 346788899998877321      2222   999999999999855


Q ss_pred             ce--eeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeecc
Q psy682          225 DL--LRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       225 ~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~  273 (330)
                      +-  ...|.+|.+  .|..+..-+.-+.++|.+ ++.|..|.+|-+..-+..
T Consensus       229 ~~g~~~el~gh~~--kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpe  278 (404)
T KOG1409|consen  229 RKGTAYELQGHND--KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPE  278 (404)
T ss_pred             Ccceeeeeccchh--hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCcc
Confidence            43  456788888  888888888888888885 889999999987665554

>smart00320 WD40 WD40 repeats

Probab=95.21  E-value=0.046  Score=32.44  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                      +++++++.+|..  .|.++.|.|++..+++++ ++.+..|
T Consensus         2 ~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320        2 GELLKTLKGHTG--PVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             cEEEEEEEecCC--ceeEEEECCCCCEEEEecCCCeEEEc
Confidence            567788888888  899999999999888885 6666665

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.09  E-value=2.5  Score=41.07  Aligned_cols=105  Identities=10%  Similarity=-0.008  Sum_probs=61.2

Q ss_pred             CCeEEEeeccCCeEEEeeeccccccccccc--CCCCcEEEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCC
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRLFSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASP  239 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v  239 (330)
                      +..+++++ .++.+.. ++.++|+++-...  .....++.- .+.    -++.||.+..++. +|+.+-......+ ...
T Consensus       241 ~~~vy~~~-~~g~l~a-~d~~tG~~~W~~~~~~~~~p~~~~~~vy----v~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~  313 (377)
T TIGR03300       241 GGQVYAVS-YQGRVAA-LDLRSGRVLWKRDASSYQGPAVDDNRLY----VTDADGVVVALDRRSGSELWKNDELKY-RQL  313 (377)
T ss_pred             CCEEEEEE-cCCEEEE-EECCCCcEEEeeccCCccCceEeCCEEE----EECCCCeEEEEECCCCcEEEccccccC-Ccc
Confidence            34556655 6899998 9998887643322  222222221 222    3567888888865 7888866533222 012


Q ss_pred             cEEEeCCCccEEEEccCCeEEEEee-CCceeeeccCcc
Q psy682          240 ESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHESHND  276 (330)
Q Consensus       240 ~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~~~~  276 (330)
                      .+..+ -++.+++...++.++.+.. +|+.+.+.+...
T Consensus       314 ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       314 TAPAV-VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             ccCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            22222 2445555456889999887 598888776443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041|consensus

Probab=94.91  E-value=0.11  Score=55.25  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccc---------------cccccccCCCCcEE-Ee----HHHHHhhhccCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYL---------------ALQEGKFDHPNRLF-SS----ISLAWKNCQRDTS  215 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g---------------~l~~~l~gH~d~Vi-aS----t~~lW~~SgS~Dg  215 (330)
                      +|++..-++-| ||||..|+-+|+ -.+++.               .+-|+|.||...|. ++    .-+|  .+...+|
T Consensus        18 ~c~~WNke~gy-IAcgG~dGlLKV-lKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL--TtSDt~G   93 (1189)
T KOG2041|consen   18 HCAEWNKESGY-IACGGADGLLKV-LKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL--TTSDTSG   93 (1189)
T ss_pred             EEEEEcccCCe-EEeccccceeEE-EEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc--cccCCCc
Confidence            57778888888 888889999998 665431               24688999999883 33    2222  0445688


Q ss_pred             cEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682          216 DVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  269 (330)
Q Consensus       216 tvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~l  269 (330)
                      -|.+|-. +|.-...+....+...|.++++..||+.|+-. .||.++.=|.||..+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI  149 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI  149 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence            8888964 67665555444444589999999999977554 788888778777655

>KOG0309|consensus

Probab=94.29  E-value=0.041  Score=58.42  Aligned_cols=148  Identities=14%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             cCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            4 GDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         4 s~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      +..+.|++|++.. +..+.++++|-..|++++|+.--..                                        -
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s----------------------------------------~  216 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS----------------------------------------E  216 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhh----------------------------------------h
Confidence            3446799999764 5788999999999999999773222                                        2


Q ss_pred             EEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEec
Q psy682           83 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV  162 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~sp  162 (330)
                      +.+.+.|+|||.|+.+..  .+...|.                 ..     .+..+|+.+. -|+-     ...|.-+..
T Consensus       217 ~~s~~~d~tvkfw~y~kS--t~e~~~~-----------------vt-----t~~piw~~r~-~Pfg-----~g~~~mp~~  266 (1081)
T KOG0309|consen  217 IMSSSNDGTVKFWDYSKS--TTESKRT-----------------VT-----TNFPIWRGRY-LPFG-----EGYCIMPMV  266 (1081)
T ss_pred             hcccCCCCceeeeccccc--cccccee-----------------cc-----ccCcceeccc-cccC-----ceeEecccc
Confidence            477888999999998543  1111121                 10     1122332221 1221     112222222


Q ss_pred             CCCeEEEeeccCCeEEEeeecccc-cccccccCCCCcEEEeHHHHHhh----------------hccCCCcEEEEcccCc
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPNRLFSSISLAWKN----------------CQRDTSDVKVHTTFGD  225 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d~ViaSt~~lW~~----------------SgS~Dgtvkl~~~~G~  225 (330)
                      -+.. +--=-.++.-++ |+..++ +.+.++.||.|+|+-   -+|+-                +=|+|.++|||-...+
T Consensus       267 G~n~-v~~~~c~n~d~e-~n~~~~~~pVh~F~GH~D~V~e---FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  267 GGNM-VPQLRCENSDLE-WNVFDLNTPVHTFVGHDDVVLE---FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CCee-eeeccccchhhh-hccccCCcceeeecCcchHHHH---HhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            1211 111112455567 888765 579999999999831   12221                4578999999965433


Q ss_pred             e
Q psy682          226 L  226 (330)
Q Consensus       226 l  226 (330)
                      .
T Consensus       342 i  342 (1081)
T KOG0309|consen  342 I  342 (1081)
T ss_pred             H
Confidence            3

>KOG2139|consensus

Probab=94.04  E-value=0.38  Score=47.56  Aligned_cols=138  Identities=9%  Similarity=0.020  Sum_probs=69.0

Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCccceeee--e-
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQKLRVR--H-  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~~~~~--~-  155 (330)
                      +..|.+..|-+|++.+..+.....+..-+   ...+.++++-|...  ++++..+   ++..|...-++.-...++  + 
T Consensus       111 ~~fava~nddvVriy~ksst~pt~Lks~s---QrnvtclawRPlsaselavgCr~---gIciW~~s~tln~~r~~~~~s~  184 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSSTCPTKLKSVS---QRNVTCLAWRPLSASELAVGCRA---GICIWSDSRTLNANRNIRMMST  184 (445)
T ss_pred             hhhhhhccCcEEEEeccCCCCCceecchh---hcceeEEEeccCCcceeeeeecc---eeEEEEcCcccccccccccccc
Confidence            34567777778999998774422222111   13467888888776  5543332   244555433222111111  1 


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcc-cC--ceeeecCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTT-FG--DLLRSLDP  232 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~-~G--~ll~tL~~  232 (330)
                      .+..+.-|.-.+.++.      . -|+-+.+.+...-+                   .|..|.||+. +|  ..|+-+.+
T Consensus       185 ~~~qvl~~pgh~pVts------m-qwn~dgt~l~tAS~-------------------gsssi~iWdpdtg~~~pL~~~gl  238 (445)
T KOG2139|consen  185 HHLQVLQDPGHNPVTS------M-QWNEDGTILVTASF-------------------GSSSIMIWDPDTGQKIPLIPKGL  238 (445)
T ss_pred             cchhheeCCCCceeeE------E-EEcCCCCEEeeccc-------------------CcceEEEEcCCCCCcccccccCC
Confidence            1111111111112221      1 27775333332111                   2445777865 23  33442222


Q ss_pred             CCCCCCCcEEEeCCCccEEEEc
Q psy682          233 PSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                          +.++-+.|||||..+..+
T Consensus       239 ----gg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  239 ----GGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ----CceeeEEEcCCCCEEEEe
Confidence                368899999999998777

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.01  E-value=1.7  Score=42.32  Aligned_cols=93  Identities=12%  Similarity=-0.012  Sum_probs=54.6

Q ss_pred             CCCeEEEeeccCCeEEEeeecccccccccccCCCC-----cEEEeHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN-----RLFSSISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF  236 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d-----~ViaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~  236 (330)
                      ++..++++. .|+.+.. ++..+|+++-....-..     .+++.-...   .++.||.+.+++. +|+++.+++.+.. 
T Consensus       278 ~~~~vyv~~-~~G~l~~-~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~---~~~~~G~l~~~d~~tG~~~~~~~~~~~-  351 (377)
T TIGR03300       278 DDNRLYVTD-ADGVVVA-LDRRSGSELWKNDELKYRQLTAPAVVGGYLV---VGDFEGYLHWLSREDGSFVARLKTDGS-  351 (377)
T ss_pred             eCCEEEEEC-CCCeEEE-EECCCCcEEEccccccCCccccCEEECCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCC-
Confidence            455656654 6899998 99888876533211111     122221111   5788999999865 7999999886653 


Q ss_pred             CCCcEEEeCCCccEEEEccCCeEEEE
Q psy682          237 ASPESVVMSREGVIVVNYERGHIAAF  262 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~~~~~~~~  262 (330)
                       .+.+--...++++++...+|.|+.|
T Consensus       352 -~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       352 -GIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             -ccccCCEEECCEEEEEeCCceEEEe
Confidence             2222212234555555566666655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=93.51  E-value=1.1  Score=49.65  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             cEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc----cCCeEEEEeeCCceeeeccC
Q psy682          216 DVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY----ERGHIAAFTMNGNRLRHESH  274 (330)
Q Consensus       216 tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~----~~~~~~~~s~nG~~las~~~  274 (330)
                      .+|+|+++|.|..+-++-.+  --.++++-|.|..||+.    ++..++.|-.||-.-.....
T Consensus       238 ~iRVy~ReG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l  298 (928)
T PF04762_consen  238 VIRVYSREGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTL  298 (928)
T ss_pred             EEEEECCCceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEec
Confidence            44555555555444443333  34567788888888887    35667788888876655543

>KOG2041|consensus

Probab=93.49  E-value=1.1  Score=48.00  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |.|++||.+|+-.+.+...-...+| -+.+..+..        -+++.||...||.+....+-|-+              
T Consensus        30 AcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsm--------NQtLeGH~~sV~vvTWNe~~QKL--------------   86 (1189)
T KOG2041|consen   30 ACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSM--------NQTLEGHNASVMVVTWNENNQKL--------------   86 (1189)
T ss_pred             EeccccceeEEEEccccCCcccccc-cccccccch--------hhhhccCcceEEEEEeccccccc--------------
Confidence            5688999999887754221111111 011111111        12456888888888888888764              


Q ss_pred             EEEEEcCCcceEEEeCC
Q psy682           81 VVTVTANHQFAINRWNP   97 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~   97 (330)
                         -|++.++-|-.|..
T Consensus        87 ---TtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   87 ---TTSDTSGLIIVWML  100 (1189)
T ss_pred             ---cccCCCceEEEEee
Confidence               67788888999998

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=93.14  E-value=2.1  Score=41.00  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeeccccccccc
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG  191 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~  191 (330)
                      .+..||||+.|+ |-+.+++|-| |.+-.-++++.
T Consensus       234 kmSlSPdg~~La-~ih~sG~lsL-W~iPsL~~~~~  266 (282)
T PF15492_consen  234 KMSLSPDGSLLA-CIHFSGSLSL-WEIPSLRLQRS  266 (282)
T ss_pred             EEEECCCCCEEE-EEEcCCeEEE-EecCcchhhcc
Confidence            466899999855 5557999999 99976666543

>KOG1523|consensus

Probab=93.01  E-value=0.93  Score=44.19  Aligned_cols=56  Identities=13%  Similarity=0.133  Sum_probs=37.8

Q ss_pred             CCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCC
Q psy682            5 DKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSP   64 (330)
Q Consensus         5 ~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~   64 (330)
                      ....|-++...+.+   +..+|+.|...|..|.++|.+..    ..+ .|++.-+...+.+++.
T Consensus        30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr----Ivtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR----IVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc----eeEccCCCCccccccCCCCe
Confidence            45678888766544   67889999999999999997644    333 3344444455544443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=92.94  E-value=0.095  Score=50.88  Aligned_cols=39  Identities=10%  Similarity=0.114  Sum_probs=28.1

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccc-cccccccCCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYL-ALQEGKFDHPN  197 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g-~l~~~l~gH~d  197 (330)
                      ..|-|++.|+||++-.|  .|+|+ |+.... +++.++.=|.+
T Consensus       284 SD~kFs~ngryIlsRdy--ltvki-wDvnm~k~pikTi~~h~~  323 (460)
T COG5170         284 SDFKFSDNGRYILSRDY--LTVKI-WDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             cceEEcCCCcEEEEecc--ceEEE-EecccccCCceeechHHH
Confidence            36889999999776544  78999 998643 45666655544

>KOG1409|consensus

Probab=92.60  E-value=1.2  Score=43.79  Aligned_cols=186  Identities=13%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             EEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee-----e--
Q psy682           84 VTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV-----R--  154 (330)
Q Consensus        84 vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~-----~--  154 (330)
                      .+++.|.++|+|... .++-.-..-|.  ...+.....+..+-. |...--+++  +..-.+.+.+......     |  
T Consensus        40 ~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~~~L~vg~~ngt--vtefs~sedfnkm~~~r~~~~h~~  115 (404)
T KOG1409|consen   40 ISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSESRRLYVGQDNGT--VTEFALSEDFNKMTFLKDYLAHQA  115 (404)
T ss_pred             EEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccceEEEEEEecce--EEEEEhhhhhhhcchhhhhhhhhc
Confidence            566778889999863 33222222332  123444555555554 221000110  1122222222211111     1  


Q ss_pred             -eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC---CcE-EEeHHHHHhhhccCCCcE---EEEcccCce
Q psy682          155 -HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP---NRL-FSSISLAWKNCQRDTSDV---KVHTTFGDL  226 (330)
Q Consensus       155 -~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~---d~V-iaSt~~lW~~SgS~Dgtv---kl~~~~G~l  226 (330)
                       ...+.|+--.+.++++| -|+.+.- -..+.|+-+....=-.   +.. .+. ..-   =|-..|.|   |+-...=.+
T Consensus       116 ~v~~~if~~~~e~V~s~~-~dk~~~~-hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~f---vGd~~gqvt~lr~~~~~~~~  189 (404)
T KOG1409|consen  116 RVSAIVFSLTHEWVLSTG-KDKQFAW-HCTESGNRLGGYNFETPASALQFDAL-YAF---VGDHSGQITMLKLEQNGCQL  189 (404)
T ss_pred             ceeeEEecCCceeEEEec-cccceEE-EeeccCCcccceEeeccCCCCceeeE-EEE---ecccccceEEEEEeecCCce
Confidence             12445666677878877 6988864 3344454332211000   000 011 000   12222222   233334578


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeecc---Cccccccc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHES---HNDNLQEL  281 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~---~~~dVkEL  281 (330)
                      +.++.||.+  .+.+++.-|--++|.|+ ++.+++.|.+-|+.=...+   ++++|++|
T Consensus       190 i~~~~~h~~--~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  190 ITTFNGHTG--EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEEEcCccc--ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            889999999  99999999999999999 5888999999887643332   33445544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=90.97  E-value=13  Score=38.53  Aligned_cols=85  Identities=15%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             hccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceeee---ccCcccccccc
Q psy682          210 CQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRH---ESHNDNLQELI  282 (330)
Q Consensus       210 SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~las---~~~~~dVkELi  282 (330)
                      +|=.+-++-+++..|.+..-+-  +.  .=+-+.|||.+.+++-++    .+++..|.+-|+.+--   ......+-+.-
T Consensus       293 ~g~~pa~~s~~~lr~Nl~~~~P--e~--~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~ws  368 (561)
T COG5354         293 SGYMPASVSVFDLRGNLRFYFP--EQ--KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWS  368 (561)
T ss_pred             ecccccceeecccccceEEecC--Cc--ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeecc
Confidence            6777778888999999655443  33  447889999999888864    6778888888887733   12222333333


Q ss_pred             --ccccchh---hhhcccCCC
Q psy682          283 --PELFFLP---EMLVNSNGY  298 (330)
Q Consensus       283 --pef~~~p---~~l~n~~~~  298 (330)
                        -|||+..   |.|.+-|..
T Consensus       369 pd~qF~~~~~ts~k~~~Dn~i  389 (561)
T COG5354         369 PDGQFYDTDTTSEKLRVDNSI  389 (561)
T ss_pred             CCceEEEecCCCcccccCcce
Confidence              3566553   566665554

>KOG4532|consensus

Probab=90.23  E-value=1.5  Score=42.07  Aligned_cols=146  Identities=12%  Similarity=0.121  Sum_probs=91.9

Q ss_pred             CcccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCcCcceee-eecCccEEEEEeCCCCCeeEeee--ccceec
Q psy682            1 MSGGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKYSPMMFS-TVLDDVCMSLKFPSNSPICHVTA--NTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~~~l~~~-~~~~d~~~~v~Fs~~~~v~~~~~--~~~~~~   76 (330)
                      |.|+.-|..++|..++ ..+++.+.-|...|.-+.-.-|.+. ++... -.|+.++|.+.--+++..+|..-  ....+.
T Consensus        88 a~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~  166 (344)
T KOG4532|consen   88 ADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHY  166 (344)
T ss_pred             EeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCcccceeeccccceeeeEE
Confidence            4577889999999984 4466677777776654444444433 33332 37777888888888888887773  222456


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcc-eeccCCCC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVP-KRHLGDNF  147 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~-~~~l~~~~  147 (330)
                      +++....++-+...-|-++-.+...-.-..-+..+..+..++.+|+.... .|+++.++.-.++ .|.++.||
T Consensus       167 snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  167 SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            66666667766666688888764431111112223346778888887666 7776777766655 55555555

>KOG0882|consensus

Probab=89.79  E-value=2.5  Score=43.07  Aligned_cols=144  Identities=18%  Similarity=0.143  Sum_probs=82.4

Q ss_pred             cccC-CCcEEEeeccc-----ccccceeecCCCcee-------EEEeCCC--CCc----------CcceeeeecCccEEE
Q psy682            2 SGGD-KGIVEVWRTFN-----LALLYAFPSCDSSVR-------SLALSHD--QKY----------SPMMFSTVLDDVCMS   56 (330)
Q Consensus         2 sgs~-d~~V~lW~~~~-----g~~l~tl~gH~~~V~-------svafSpd--g~~----------~~l~~~~~~~d~~~~   56 (330)
                      |..+ |..+|+.++.+     +..+.-|+|-..|+.       .||.|.-  |..          ....+...|...|-.
T Consensus        70 Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   70 SVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK  149 (558)
T ss_pred             eccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence            4344 88999987664     455555666655553       4554432  111          112233355555666


Q ss_pred             EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCC
Q psy682           57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNN  134 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~  134 (330)
                      +.+.|-+..                 .+|.+..+.|.-|...+.  -+.|         -..+.|++--.  |.      
T Consensus       150 i~y~qa~Ds-----------------~vSiD~~gmVEyWs~e~~--~qfP---------r~~l~~~~K~eTdLy------  195 (558)
T KOG0882|consen  150 IRYNQAGDS-----------------AVSIDISGMVEYWSAEGP--FQFP---------RTNLNFELKHETDLY------  195 (558)
T ss_pred             EEeeccccc-----------------eeeccccceeEeecCCCc--ccCc---------cccccccccccchhh------
Confidence            666655554                 377788888999999652  1111         01122211111  00      


Q ss_pred             CCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682          135 NAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       135 ~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~  193 (330)
                         ...+.         .....+|.|+|||..|..-+ .|..||+ +.+.+|++.|.+.
T Consensus       196 ---~f~K~---------Kt~pts~Efsp~g~qistl~-~DrkVR~-F~~KtGklvqeiD  240 (558)
T KOG0882|consen  196 ---GFPKA---------KTEPTSFEFSPDGAQISTLN-PDRKVRG-FVFKTGKLVQEID  240 (558)
T ss_pred             ---ccccc---------ccCccceEEccccCcccccC-cccEEEE-EEeccchhhhhhh
Confidence               00111         11125899999999955555 8999999 9999999887764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=89.58  E-value=3.4  Score=46.00  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             CCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Cccee--ee----ecCccEEEEEeCC
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMF--ST----VLDDVCMSLKFPS   61 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~--~~----~~~d~~~~v~Fs~   61 (330)
                      -+.||+|+. +|++..+-..-.+.-.++++.|.|++                  |.+.-  +.    ..+..|..+.+++
T Consensus       236 ~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  236 RRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS  314 (928)
T ss_pred             eeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence            478999988 48888887766667778999999988                  11100  11    2345788999999


Q ss_pred             CCCeeEee
Q psy682           62 NSPICHVT   69 (330)
Q Consensus        62 ~~~v~~~~   69 (330)
                      ||.++++-
T Consensus       315 ds~iLAv~  322 (928)
T PF04762_consen  315 DSEILAVW  322 (928)
T ss_pred             CCCEEEEE
Confidence            99998543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.15  E-value=1.2  Score=45.34  Aligned_cols=138  Identities=13%  Similarity=0.118  Sum_probs=69.4

Q ss_pred             CCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC-
Q psy682          116 PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD-  194 (330)
Q Consensus       116 ~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-  194 (330)
                      +.+++++|+++.....+++   ....-....+.....+....++|.+.++| ++-- ..++|++ +.--+.+....+.- 
T Consensus        35 p~~ls~npngr~v~V~g~g---eY~iyt~~~~r~k~~G~g~~~vw~~~n~y-Av~~-~~~~I~I-~kn~~~~~~k~i~~~  108 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGDG---EYEIYTALAWRNKAFGSGLSFVWSSRNRY-AVLE-SSSTIKI-YKNFKNEVVKSIKLP  108 (443)
T ss_dssp             -SEEEE-TTSSEEEEEETT---EEEEEETTTTEEEEEEE-SEEEE-TSSEE-EEE--TTS-EEE-EETTEE-TT-----S
T ss_pred             CeeEEECCCCCEEEEEcCC---EEEEEEccCCcccccCceeEEEEecCccE-EEEE-CCCeEEE-EEcCccccceEEcCC
Confidence            4568888888844322222   11111122233334455567889988886 3333 3677888 64323332112211 


Q ss_pred             -CCCcEEEeHHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682          195 -HPNRLFSSISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       195 -H~d~ViaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~  267 (330)
                       ..+.++.-.+.+    .+.++.|.+++. +|++++.+.-.    .|..|.+|++|..+|-.+++++....-|-.
T Consensus       109 ~~~~~If~G~LL~----~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  109 FSVEKIFGGNLLG----VKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             S-EEEEE-SSSEE----EEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             cccceEEcCcEEE----EECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence             123333322221    223446888875 69999999853    479999999999999999999888887766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.12  E-value=2.6  Score=42.70  Aligned_cols=89  Identities=8%  Similarity=-0.069  Sum_probs=39.9

Q ss_pred             EEEcCCcceEEEeCCC--CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccCCCCcccee--eeee
Q psy682           83 TVTANHQFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLGDNFSQKLR--VRHN  156 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~--~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~~~~~~~~~--~~~~  156 (330)
                      ..+.++++...+|..|  +.....+ .+..   .....=+++|||+ ++-.|. ++...+.+....+.-.+.+.  +...
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~---gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~  328 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPRL-TNGF---GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN  328 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcceec-ccCC---ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC
Confidence            3444555556666554  3332222 2211   1222567899999 333222 12122223332221111111  1111


Q ss_pred             -EEEEecCCCeEEEeeccCC
Q psy682          157 -CFVTTVDSRFLLACGFWDN  175 (330)
Q Consensus       157 -~~~~spDg~~i~asg~~D~  175 (330)
                       +-..||||++|+..++.++
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             cCccCCCCCCEEEEEeccCC
Confidence             3447899999777775444

>KOG4714|consensus

Probab=88.75  E-value=1.5  Score=41.83  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             CcccCCCcEEEeeccccccc-ceeecCCCceeEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALL-YAFPSCDSSVRSLALSHD   38 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l-~tl~gH~~~V~svafSpd   38 (330)
                      +.|++||.|-||+..++... ..|+.|...+|-|-|.|.
T Consensus       196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            36889999999998876543 447999999999999884

>KOG2695|consensus

Probab=88.67  E-value=1  Score=44.45  Aligned_cols=33  Identities=12%  Similarity=-0.103  Sum_probs=24.6

Q ss_pred             EEecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682          159 VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~  193 (330)
                      -+.+....|++.| -|--.|+ |+++.|.|+.++.
T Consensus       353 ~v~~eeg~I~s~G-dDcytRi-Wsl~~ghLl~tip  385 (425)
T KOG2695|consen  353 HVKEEEGSIFSVG-DDCYTRI-WSLDSGHLLCTIP  385 (425)
T ss_pred             ccccccceEEEcc-CeeEEEE-EecccCceeeccC
Confidence            3556666766644 7999999 9999898877664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.91  E-value=27  Score=33.85  Aligned_cols=95  Identities=13%  Similarity=0.104  Sum_probs=57.5

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEE-eeeccccccccc----c----cCCCCcE-EEeHHHHHhhhccCC-CcEEEEccc
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFRE-PFTTMYLALQEG----K----FDHPNRL-FSSISLAWKNCQRDT-SDVKVHTTF  223 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl-~w~~~~g~l~~~----l----~gH~d~V-iaSt~~lW~~SgS~D-gtvkl~~~~  223 (330)
                      .|.++||||++.++.+=+.-+.|.- +|+..+|..-..    .    .|-.|-. +.+-=.+|. ++-.+ +-|..++.+
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pd  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPD  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCC
Confidence            4789999999999988766666644 333222332211    1    1222221 223334454 22222 367788999


Q ss_pred             CceeeecCCCCCCCCCcEEEeC-CCccEEE
Q psy682          224 GDLLRSLDPPSGFASPESVVMS-REGVIVV  252 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS-~dG~~l~  252 (330)
                      |++++..+-|..  .+.+++|- |++.+|.
T Consensus       244 G~l~~~i~lP~~--~~t~~~FgG~~~~~L~  271 (307)
T COG3386         244 GKLLGEIKLPVK--RPTNPAFGGPDLNTLY  271 (307)
T ss_pred             CcEEEEEECCCC--CCccceEeCCCcCEEE
Confidence            999999988866  78999997 5555553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=87.78  E-value=0.94  Score=31.72  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             CCcEEEeCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682          238 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  269 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~l  269 (330)
                      .|..+++||..-+||-+ .+|.+.+|..||+.+
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            78999999999999999 599999999999865

>KOG2114|consensus

Probab=87.67  E-value=13  Score=40.83  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccc-----cccCCC--CcE----EEe--HHHHHhhhccCCCcEEEEcc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE-----GKFDHP--NRL----FSS--ISLAWKNCQRDTSDVKVHTT  222 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~-----~l~gH~--d~V----iaS--t~~lW~~SgS~Dgtvkl~~~  222 (330)
                      .+++++.|=+. ++||+.+|.|-+ .   .|...+     ...-|.  +.|    +.+  +..+.   ...-..|+++..
T Consensus       129 s~l~Vs~~l~~-Iv~Gf~nG~V~~-~---~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF---v~Tt~~V~~y~l  200 (933)
T KOG2114|consen  129 SSLAVSEDLKT-IVCGFTNGLVIC-Y---KGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF---VATTEQVMLYSL  200 (933)
T ss_pred             eEEEEEccccE-EEEEecCcEEEE-E---cCcchhccccceeeeccCCCCceeeEEecCCceeEE---EEecceeEEEEe
Confidence            46778888777 899999998754 2   132211     001111  111    111  00010   111223566766


Q ss_pred             cCce--eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682          223 FGDL--LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL  269 (330)
Q Consensus       223 ~G~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l  269 (330)
                      +|+-  +.+|..|..  ++++.+|++--.-++.++...+..|+.+|+..
T Consensus       201 ~gr~p~~~~ld~~G~--~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  201 SGRTPSLKVLDNNGI--SLNCSSFSDGTYQFICAGSEFLYFYDSDGRGP  247 (933)
T ss_pred             cCCCcceeeeccCCc--cceeeecCCCCccEEEecCceEEEEcCCCcce
Confidence            6766  666777766  89999999776655566666666676666544

>KOG1916|consensus

Probab=87.33  E-value=0.27  Score=53.57  Aligned_cols=64  Identities=14%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      +..+++|+|-+.+. .+...|.+|..++.++||=..|-+             +.-..||||.++                
T Consensus       201 ~~~~~~i~lL~~~r-a~~~l~rsHs~~~~d~a~~~~g~~-------------~l~~lSpDGtv~----------------  250 (1283)
T KOG1916|consen  201 GLKGGEIRLLNINR-ALRSLFRSHSQRVTDMAFFAEGVL-------------KLASLSPDGTVF----------------  250 (1283)
T ss_pred             ccCCCceeEeeech-HHHHHHHhcCCCcccHHHHhhchh-------------hheeeCCCCcEE----------------
Confidence            45788999877754 444678889999999999765544             222377888764                


Q ss_pred             EEEcCCcceEEEeCC
Q psy682           83 TVTANHQFAINRWNP   97 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~   97 (330)
                       |.+..|+.++-|.+
T Consensus       251 -a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  251 -AWAISDGSVGFYQI  264 (1283)
T ss_pred             -EEeecCCccceeee
Confidence             88888888999998

>KOG1832|consensus

Probab=87.02  E-value=0.44  Score=51.98  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=70.2

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee--------ee-ecCccEEEEEeCCCCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF--------ST-VLDDVCMSLKFPSNSP   64 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~--------~~-~~~d~~~~v~Fs~~~~   64 (330)
                      -|+-.|.||+.++.+|.......+|+..|+-|--|-||.+        +|+..        .. ..=+.+-.+||+-..+
T Consensus      1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q 1197 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQ 1197 (1516)
T ss_pred             eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhhHH
Confidence            4778899999999999999999999999999999999988        22211        01 1123445567765544


Q ss_pred             eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCcee
Q psy682           65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILT  128 (330)
Q Consensus        65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~  128 (330)
                      .=               ++.++. |. +.+++.+++...++ ..-.....-..++..|+|+-++.
T Consensus      1198 ~r---------------~~gt~~-d~-a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1198 FR---------------ALGTEA-DD-ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HH---------------Hhcccc-cc-eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            31               223333 33 68888876653222 11111111234678888888855

>KOG4532|consensus

Probab=86.70  E-value=6.1  Score=37.99  Aligned_cols=95  Identities=7%  Similarity=-0.050  Sum_probs=55.4

Q ss_pred             cccCCCcEEEeecccccccceeecCCC--ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCee---Eeeeccc---
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDS--SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPIC---HVTANTY---   73 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~--~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~---~~~~~~~---   73 (330)
                      .++.|.|+|+-.+..+-.-.  .-|..  -+.+.++|+|++.   +..-|....|..-+..-+|..+   +++.++.   
T Consensus       133 i~sndht~k~~~~~~~s~~~--~~h~~~~~~ns~~~snd~~~---~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  133 IASNDHTGKTMVVSGDSNKF--AVHNQNLTQNSLHYSNDPSW---GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF  207 (344)
T ss_pred             eccCCcceeEEEEecCcccc--eeeccccceeeeEEcCCCce---EEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence            36789999999885433322  33443  3899999999988   2222333333333333333322   1111111   


Q ss_pred             -eeccCCcEEEEEcCCcceEEEeCCCCCC
Q psy682           74 -VTLHMPSVVTVTANHQFAINRWNPDYAA  101 (330)
Q Consensus        74 -~~~~~~~~v~vS~~~~~tv~lW~~~~~~  101 (330)
                       ..++.-....|.+.+|+++-+|+..+..
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccc
Confidence             2344444456888899999999987654

>KOG2695|consensus

Probab=86.60  E-value=1.6  Score=43.07  Aligned_cols=66  Identities=8%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             hccCCCcEEEEcc----cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCc
Q psy682          210 CQRDTSDVKVHTT----FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       210 SgS~Dgtvkl~~~----~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~  275 (330)
                      +.+.||+|+||+.    .|+-+++.+||.+.....-+-+-++--+|+++ +|.-.+.|+++ |++|.+..-.
T Consensus       316 aS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  316 ASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            6678999999985    47779999999875455555556654455555 67789999987 7777776533

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=86.02  E-value=33  Score=33.69  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             hccCCCcEEEEc-ccCceeeecCCCCCCCCCc-EEEeCCCccEEEEccCCeEEEEe
Q psy682          210 CQRDTSDVKVHT-TFGDLLRSLDPPSGFASPE-SVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       210 SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~-~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                      -++.||.+...+ .+|+++-..+-+..  .+. +-.+ .+|++++...++.++.|.
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~-~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV-ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE-ECCEEEEEeCCceEEEEe
Confidence            467888877755 48998877653222  111 1122 356666666666666654

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.29  E-value=19  Score=38.37  Aligned_cols=69  Identities=9%  Similarity=-0.006  Sum_probs=40.5

Q ss_pred             CCCCccccCCCceeccCCCCCCCcceeccCC---CCcc------ceeee------eeEEEEecCCCeEEEeeccCCeEEE
Q psy682          115 PPGNLPLTLDPILTHPTSNNNAPVPKRHLGD---NFSQ------KLRVR------HNCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       115 ~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~---~~~~------~~~~~------~~~~~~spDg~~i~asg~~D~tirl  179 (330)
                      .+..+.+||||+++..+...+..+....+..   .+..      .+...      ....+|.++|.. +++=+-|..|-.
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~a-ytslf~dsqv~k  400 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNA-YTTLFLDSQIVK  400 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCE-EEeEeecceeEE
Confidence            4667999999996654444333333222211   1111      11111      135678888865 888889998877


Q ss_pred             eeeccc
Q psy682          180 PFTTMY  185 (330)
Q Consensus       180 ~w~~~~  185 (330)
                       |++++
T Consensus       401 -wn~~~  405 (635)
T PRK02888        401 -WNIEA  405 (635)
T ss_pred             -EehHH
Confidence             99864

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.14  E-value=6.1  Score=42.02  Aligned_cols=80  Identities=14%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccc-ccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-LQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS  234 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~  234 (330)
                      .-+++||||+++++++--++++-+ .++++.+ ++..-..-.+.|.+ .+.+    |                       
T Consensus       324 HGV~vSPDGkylyVanklS~tVSV-IDv~k~k~~~~~~~~~~~~vva-evev----G-----------------------  374 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTV-IDVRKLDDLFDGKIKPRDAVVA-EPEL----G-----------------------  374 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEE-EEChhhhhhhhccCCccceEEE-eecc----C-----------------------
Confidence            468899999999999988999999 8886433 12111233332322 2222    1                       


Q ss_pred             CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                        ..+.-.+|.++|....|- -+..++-|.++.
T Consensus       375 --lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        375 --LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              145667788888755443 356667776553

>KOG0280|consensus

Probab=84.63  E-value=28  Score=33.91  Aligned_cols=126  Identities=10%  Similarity=0.029  Sum_probs=80.9

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccc--cccCCCCcE-EEeHHHHHhh----hccCCCcEEEEccc--Cce
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE--GKFDHPNRL-FSSISLAWKN----CQRDTSDVKVHTTF--GDL  226 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~--~l~gH~d~V-iaSt~~lW~~----SgS~Dgtvkl~~~~--G~l  226 (330)
                      .+..+++-|.-|+++ -.++++-+ -+...+.+.+  .+.+|.--. .+. .-.|+.    +|++|+.+.-|+..  ++.
T Consensus       125 lslD~~~~~~~i~vs-~s~G~~~~-v~~t~~~le~vq~wk~He~E~Wta~-f~~~~pnlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVS-DSRGSISG-VYETEMVLEKVQTWKVHEFEAWTAK-FSDKEPNLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eEEEeeccCceEEEE-cCCCcEEE-Eecceeeeeecccccccceeeeeee-cccCCCceEEecCCCceEEEEEecCCcce
Confidence            355567777775554 35676664 3333355543  777886433 111 001111    99999999999864  555


Q ss_pred             eee-cCCCCCCCCCcEEEeCC-CccEEEEcc-CCeEEEEeeC--CceeeeccCcccccccc--cccc
Q psy682          227 LRS-LDPPSGFASPESVVMSR-EGVIVVNYE-RGHIAAFTMN--GNRLRHESHNDNLQELI--PELF  286 (330)
Q Consensus       227 l~t-L~~h~~~~~v~~v~fS~-dG~~l~s~~-~~~~~~~s~n--G~~las~~~~~dVkELi--pef~  286 (330)
                      +-+ -+-|..  .|-+|.=|| ++..|++|+ +..+++|...  |+.|......+-|..+.  |+.+
T Consensus       202 i~~n~kvH~~--GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  202 IWHNSKVHTS--GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             eeecceeeec--ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            544 555655  788998885 589999998 8889888655  88888877666555443  5555

>KOG1354|consensus

Probab=83.80  E-value=2.7  Score=41.53  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccc-----ccccccCCCCcE--EEe---HHHH----Hhh--------hccC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-----LQEGKFDHPNRL--FSS---ISLA----WKN--------CQRD  213 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-----l~~~l~gH~d~V--iaS---t~~l----W~~--------SgS~  213 (330)
                      .++.|..+|.+ +++|-.++.+-+ +..+...     .+.....|.---  +-|   -.++    |--        -...
T Consensus        29 s~vef~~~Ge~-LatGdkgGRVv~-f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   29 SAVEFDHYGER-LATGDKGGRVVL-FEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             eeEEeecccce-EeecCCCCeEEE-eecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            48899999999 778878888877 7765322     222222332211  111   0111    211        2235


Q ss_pred             CCcEEEEccc--Ccee--------------ee-----cC----------------CCCCCCCCcEEEeCCCccEEEEccC
Q psy682          214 TSDVKVHTTF--GDLL--------------RS-----LD----------------PPSGFASPESVVMSREGVIVVNYER  256 (330)
Q Consensus       214 Dgtvkl~~~~--G~ll--------------~t-----L~----------------~h~~~~~v~~v~fS~dG~~l~s~~~  256 (330)
                      |+|||+|...  +.-.              .+     +.                +|.-  -+++|++..|+++..|+++
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty--hiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY--HINSISVNSDKETFLSADD  184 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee--EeeeeeecCccceEeeccc
Confidence            8888888642  1111              11     11                2333  6899999999999999999


Q ss_pred             CeEEEEee
Q psy682          257 GHIAAFTM  264 (330)
Q Consensus       257 ~~~~~~s~  264 (330)
                      -+|-+|.+
T Consensus       185 LRINLWnl  192 (433)
T KOG1354|consen  185 LRINLWNL  192 (433)
T ss_pred             eeeeeccc
Confidence            99998863

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.07  E-value=50  Score=32.46  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc-E----------------EEe-----HHHHHhhhccC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR-L----------------FSS-----ISLAWKNCQRD  213 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~-V----------------iaS-----t~~lW~~SgS~  213 (330)
                      .+++...-+.+|+++=+..++|.+ |+-.-.++. .--+..|. |                +++     .-+.=++.|.-
T Consensus       143 LAi~~~~~~~~LYaadF~~g~IDV-Fd~~f~~~~-~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G  220 (336)
T TIGR03118       143 LAVGPTGGGDYLYAANFRQGRIDV-FKGSFRPPP-LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG  220 (336)
T ss_pred             eEEeecCCCceEEEeccCCCceEE-ecCcccccc-CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC
Confidence            355555667899999999999999 876433321 11112222 1                222     00001124555


Q ss_pred             CCcEEEEcccCceeeecC--CCCCCCCCcEEEeCCC------ccEEEEc-cCCeEEEEeeC-CceeeeccCc
Q psy682          214 TSDVKVHTTFGDLLRSLD--PPSGFASPESVVMSRE------GVIVVNY-ERGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       214 Dgtvkl~~~~G~ll~tL~--~h~~~~~v~~v~fS~d------G~~l~s~-~~~~~~~~s~n-G~~las~~~~  275 (330)
                      -|-|-+++.+|+|+|.|.  ++-+  .++.|+..|.      |.+||-- +|++|..|.++ |+.+-.+...
T Consensus       221 ~G~VdvFd~~G~l~~r~as~g~LN--aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~  290 (336)
T TIGR03118       221 LGYVNVFTLNGQLLRRVASSGRLN--APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP  290 (336)
T ss_pred             cceEEEEcCCCcEEEEeccCCccc--CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence            678999999999999884  3445  7889998654      5666654 89999999986 8888777644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2079|consensus

Probab=82.66  E-value=2.2  Score=47.43  Aligned_cols=47  Identities=11%  Similarity=0.096  Sum_probs=39.3

Q ss_pred             eeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682          151 LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       151 ~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                      ..+...|++|+.||++ +..|+.+|-|.+ |+...+++++.++.|..++
T Consensus       129 v~~~Vtsvafn~dg~~-l~~G~~~G~V~v-~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSL-LLAGLGDGHVTV-WDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             cCCcceeeEecCCCce-eccccCCCcEEE-EEccCCcceeeeeecCCcc
Confidence            4444578999999988 667889999999 9999999999998886544

>PRK13616 lipoprotein LpqB; Provisional

Probab=82.46  E-value=57  Score=34.64  Aligned_cols=101  Identities=7%  Similarity=-0.020  Sum_probs=47.3

Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-CCcccCC-CCCCCCCCCCCCccccCCCc-eec
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-AASIQSP-SYAETPGSPPGNLPLTLDPI-LTH  129 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~  129 (330)
                      .+-..++||||+.++....           .+....+..-+||..+. +..+... |.      ....-+++|||. +..
T Consensus       351 ~vsspaiSpdG~~vA~v~~-----------~~~~~~d~~s~Lwv~~~gg~~~~lt~g~------~~t~PsWspDG~~lw~  413 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVT-----------LGRGAPDPASSLWVGPLGGVAVQVLEGH------SLTRPSWSLDADAVWV  413 (591)
T ss_pred             CcccceECCCCCEEEEEEe-----------ecCCCCCcceEEEEEeCCCcceeeecCC------CCCCceECCCCCceEE
Confidence            4567778888877644321           11223344557776542 2222221 11      234678889966 443


Q ss_pred             cCCC----------CCCCcceeccCC-CCccceeeeeeEEEEecCCCeEEEe
Q psy682          130 PTSN----------NNAPVPKRHLGD-NFSQKLRVRHNCFVTTVDSRFLLAC  170 (330)
Q Consensus       130 ~s~~----------~~~~~~~~~l~~-~~~~~~~~~~~~~~~spDg~~i~as  170 (330)
                      .+.+          ....++...+.. ...+.+......+++||||+.|+..
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence            2211          111111111111 1111223334678899999985543

>KOG3617|consensus

Probab=82.21  E-value=23  Score=39.22  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      |=.-|.+-+|+-++-+....-.-|...|..+.|||||..                                         
T Consensus        77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~-----------------------------------------  115 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTV-----------------------------------------  115 (1416)
T ss_pred             ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCe-----------------------------------------
Confidence            334567888877664444344567777777777777666                                         


Q ss_pred             EEEcCCcceEEEeCCCC-CCcccCC--CCCCCCCC--CCCCccccCCC
Q psy682           83 TVTANHQFAINRWNPDY-AASIQSP--SYAETPGS--PPGNLPLTLDP  125 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~-~~~~~~~--~h~~~~~~--~~~~l~fs~D~  125 (330)
                      .+|++.-+.|++|..+. +++.+++  .|.-  ++  --.+|.+++|+
T Consensus       116 l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel--~~~ltl~cfRL~~~~  161 (1416)
T KOG3617|consen  116 LMTLDNPGSVHLWRYDVIGEIQTSNIMQHEL--NDQLTLWCFRLSYDR  161 (1416)
T ss_pred             EEEcCCCceeEEEEeeeccccccchhhhhHh--hceeeEEEEecCCCh
Confidence            58999999999999972 2233332  4431  11  12378888883

>KOG0280|consensus

Probab=81.95  E-value=6.7  Score=38.05  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           46 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        46 ~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      +...|+-.+|..+|+.+-|-+                .-|++.|..+.-|+.
T Consensus       160 ~wk~He~E~Wta~f~~~~pnl----------------vytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNL----------------VYTGGDDGSLSCWDI  195 (339)
T ss_pred             cccccceeeeeeecccCCCce----------------EEecCCCceEEEEEe
Confidence            455777778888888777742                578899999999998

>KOG3621|consensus

Probab=81.87  E-value=9.4  Score=40.84  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee---HHHHHhhhccCCCcEEEEccc----Cce--
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS---ISLAWKNCQRDTSDVKVHTTF----GDL--  226 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS---t~~lW~~SgS~Dgtvkl~~~~----G~l--  226 (330)
                      +...++| ++-|++-+.+-+ ++...|+++..-++-.+.++    .|   .+.+   .|+..|-|-+.-.+    +++  
T Consensus        41 ~dst~~~-l~~GsS~G~lyl-~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvA---agt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   41 VDATEEY-LAMGSSAGSVYL-YNRHTGEMRKLKNEGATGITCVRSVSSVEYLVA---AGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             eecCCce-EEEecccceEEE-EecCchhhhcccccCccceEEEEEecchhHhhh---hhcCCceEEeehhhccCCCccee
Confidence            5566788 556777899999 99987776555552233332    22   3333   67777877776432    222  


Q ss_pred             eeecCC-CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          227 LRSLDP-PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       227 l~tL~~-h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      +..+.- |..  +|+++++|+||+.+.+|+ +|.++.-..|-+
T Consensus       116 ~t~~d~~~~~--rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~  156 (726)
T KOG3621|consen  116 VTPCDKSHKC--RVTALEWSKNGMKLYSGDSQGKVVLTELDSR  156 (726)
T ss_pred             eccccccCCc--eEEEEEecccccEEeecCCCceEEEEEechh
Confidence            222222 334  899999999999999995 888888877763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=81.51  E-value=4.5  Score=39.30  Aligned_cols=40  Identities=20%  Similarity=0.401  Sum_probs=29.3

Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeC
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMN  265 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~n  265 (330)
                      |+..+-+.++-.  ..+.|+|||||+++.-++  ...++.|..+
T Consensus       152 g~~~~l~~~~~~--~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         152 GGVVRLLDDDLT--IPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CCEEEeecCcEE--ecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            444444544433  689999999999888885  4778888776

>KOG1920|consensus

Probab=80.95  E-value=59  Score=37.12  Aligned_cols=103  Identities=15%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             EEEEecCCCeEEEeec---cC-CeEEEeeecccccccccccCCCCcEEEeHHHHHhhh---------ccCCCcEEEEccc
Q psy682          157 CFVTTVDSRFLLACGF---WD-NSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNC---------QRDTSDVKVHTTF  223 (330)
Q Consensus       157 ~~~~spDg~~i~asg~---~D-~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~S---------gS~Dgtvkl~~~~  223 (330)
                      ++..--||+|+++++.   .+ +.||+ |+.+ |.|..+-..-..   -.....|..|         -..|++|.++-++
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV-~drE-g~Lns~se~~~~---l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRV-YDRE-GALNSTSEPVEG---LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEE-eccc-chhhcccCcccc---cccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence            4555567777555332   34 88999 9998 776533221110   1123334432         2335589998887


Q ss_pred             CceeeecC--CCCCCCCCcEEEeCCCccEEEEc---c-CCeEEEEee
Q psy682          224 GDLLRSLD--PPSGFASPESVVMSREGVIVVNY---E-RGHIAAFTM  264 (330)
Q Consensus       224 G~ll~tL~--~h~~~~~v~~v~fS~dG~~l~s~---~-~~~~~~~s~  264 (330)
                      |-.-..+.  -+.+-..|..++++.++-+||--   . ...+.+|+.
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            75544332  23332258999999999999873   2 333666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		2e-15
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		1e-12

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 42/53 (79%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINR 329
           +++ELIPE ++LPE  VNSNGY LG  ED V +N+V+LPPWA  PE FVRINR
Sbjct: 281 DVKELIPEFYYLPEXFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINR 333

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 277 NLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
           +++ELIPE ++LPEM VN N Y LG  +D   +++VELPPWA + E+FV INR+
Sbjct: 281 DIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 334

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	6e-14
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	2e-09

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score = 71.0 bits (173), Expect = 6e-14
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 280 ELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
           ELIPE ++LPEM VN N Y LG  +D   +++VELPPWA + E+FV INR+
Sbjct: 284 ELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 334

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 178 REPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVK 218
            EPFTT +L LQ GKFDH +R FSSIS AW+N QRDTSD+K
Sbjct: 243 IEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIK 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
2pm7_B	297	Protein transport protein SEC13, protein transport	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.88
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.88
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.85
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.85
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.85
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.84
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.83
3jro_A	753	Fusion protein of protein transport protein SEC13	99.83
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.83
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.82
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.82
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.82
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.82
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.82
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.81
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.81
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.8
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.79
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	99.78
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.78
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.77
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.77
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.76
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.74
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.73
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.72
3jro_A	753	Fusion protein of protein transport protein SEC13	99.72
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.71
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.63
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.6
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.58
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.57
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.57
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.5
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.48
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.46
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.45
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.45
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.44
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.43
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.42
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.41
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.36
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.35
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.34
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.32
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.27
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.25
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.23
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.06
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.05
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.04
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.02
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.99
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.97
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.94
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.93
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.91
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.89
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.87
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.78
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.45
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.36
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.19
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.13
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.06
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.85
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.64
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.74
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.38
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.58
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	94.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.89
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.81
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.68
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.45
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.95
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	93.69
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	93.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.83
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	92.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.14
3v65_B	386	Low-density lipoprotein receptor-related protein;	89.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.59
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.57
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	89.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	88.99
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	88.91
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	87.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	87.03
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	86.95
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	86.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	86.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	86.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	85.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	81.74
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	81.18

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=6.7e-32  Score=267.08  Aligned_cols=269  Identities=17%  Similarity=0.216  Sum_probs=216.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      |+|+.||+|++|+. +++.+.++.+|...|.+++|+|||+.                 ..+....+|+..+..++|+||+
T Consensus       196 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~  274 (577)
T 2ymu_A          196 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG  274 (577)
T ss_dssp             EEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence            47889999999997 67899999999999999999999987                 2223456888999999999999


Q ss_pred             CeeEeeeccc------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682           64 PICHVTANTY------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL  119 (330)
Q Consensus        64 ~v~~~~~~~~------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l  119 (330)
                      +.++.+....                        ..+.+++..+++++.+++|++|+.++..+....+|..    .+.++
T Consensus       275 ~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~----~v~~~  350 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS----SVWGV  350 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSS----CEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCC----CEEEE
Confidence            9888765432                        2456677778899999999999998888888888874    66789


Q ss_pred             cccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682          120 PLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       120 ~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH  195 (330)
                      .|+||+. +++++.++.  +..+...+...+++..+.   .+++|+|||++ +++|+.|++|++ |+. ++++++.+.+|
T Consensus       351 ~~s~~g~~l~~~~~dg~--v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~-~~~-~~~~~~~~~~~  425 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKT--VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL-WNR-NGQLLQTLTGH  425 (577)
T ss_dssp             EECTTSSEEEEEETTSE--EEEEETTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEE-ECT-TCCEEEEEECC
T ss_pred             EECCCCCEEEEEeCCCE--EEEEcCCCCEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEE-EeC-CCCEEEEecCC
Confidence            9999999 554333332  334443333334444443   57899999999 555668999999 997 58999999999


Q ss_pred             CCcE-----------EEe-----HHHHHhh----------------------------hccCCCcEEEEcccCceeeecC
Q psy682          196 PNRL-----------FSS-----ISLAWKN----------------------------CQRDTSDVKVHTTFGDLLRSLD  231 (330)
Q Consensus       196 ~d~V-----------iaS-----t~~lW~~----------------------------SgS~Dgtvkl~~~~G~ll~tL~  231 (330)
                      ...|           +++     ++++|+.                            +|+.||+|+||+.+|+++++|.
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~  505 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  505 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe
Confidence            9987           222     7888876                            8899999999999999999999


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeeccCc-cccccc
Q psy682          232 PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~~-~dVkEL  281 (330)
                      +|.+  .|.+|+|||||+.||+++ ++.+++|..+|+.++.+..| +.|..|
T Consensus       506 ~h~~--~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          506 GHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             CCSS--CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEE
T ss_pred             CCCC--CEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEE
Confidence            9999  999999999999999985 78999999999999998755 445544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=2.3e-31  Score=263.21  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=198.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      ++++.|++|++|+. +++.+.++.+|...|++++|+|||+.                 ..+....+|...+..++|+|++
T Consensus       278 ~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g  356 (577)
T 2ymu_A          278 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG  356 (577)
T ss_dssp             EEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC
Confidence            46789999999997 57888999999999999999999887                 1123345788889999999999


Q ss_pred             CeeEeeeccc------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc
Q psy682           64 PICHVTANTY------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL  119 (330)
Q Consensus        64 ~v~~~~~~~~------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l  119 (330)
                      ..++.+....                        +.+.+++..+|+++.|++|++|+.++..+....+|..    .+.++
T Consensus       357 ~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~----~v~~~  432 (577)
T 2ymu_A          357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS----SVWGV  432 (577)
T ss_dssp             SEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSS----CEEEE
T ss_pred             CEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCC----CeEEE
Confidence            9888775332                        3566777778999999999999998887777889974    56789


Q ss_pred             cccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682          120 PLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       120 ~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH  195 (330)
                      .|+||++ +++++.++.  +..|.+.+...+++..+.   .+++|+|||++ +++++.|++||+ |+. +|++++.+.+|
T Consensus       433 ~~s~d~~~l~~~~~d~~--v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~i-w~~-~~~~~~~~~~h  507 (577)
T 2ymu_A          433 AFSPDDQTIASASDDKT--VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL-WNR-NGQLLQTLTGH  507 (577)
T ss_dssp             EECTTSSEEEEEETTSE--EEEEETTSCEEEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEE-EET-TSCEEEEEECC
T ss_pred             EECCCCCEEEEEcCCCE--EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEE-EcC-CCCEEEEEeCC
Confidence            9999999 555344333  334444443334444443   58899999999 555668999999 997 69999999999


Q ss_pred             CCcE--E--Ee--HHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          196 PNRL--F--SS--ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       196 ~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      .+.|  +  .+  ...+   +|+.||+|+||+.+|+++++|.+|.+  .|.+|+|||||+.|++++ |+++++|+
T Consensus       508 ~~~v~~l~~s~dg~~l~---s~~~dg~v~lwd~~~~~~~~~~~h~~--~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          508 SSSVRGVAFSPDGQTIA---SASDDKTVKLWNRNGQLLQTLTGHSS--SVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEEECTTSSCEE---EEETTSEEEEECTTSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEEcCCCCEEE---EEECcCEEEEEeCCCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9988  2  22  3344   89999999999999999999999999  999999999999999985 78898884

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=3.7e-31  Score=256.12  Aligned_cols=234  Identities=14%  Similarity=0.131  Sum_probs=187.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |||+.||+|++|++.+|+...+|++|.+.|++|+|+|+|++                  ..+....+|...|..+.|+|+
T Consensus       124 ~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~  203 (410)
T 1vyh_C          124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  203 (410)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC
Confidence            58999999999999999999999999999999999999987                  122334588889999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      +..+                 +|++.|++|++|+...+. +.++.+|.+    .+..+.+++|+. +++++.++...  .
T Consensus       204 ~~~l-----------------~s~s~D~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~g~~l~s~s~D~~v~--v  260 (410)
T 1vyh_C          204 GDHI-----------------VSASRDKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDGTLIASCSNDQTVR--V  260 (410)
T ss_dssp             SSEE-----------------EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEE--E
T ss_pred             CCEE-----------------EEEeCCCeEEEEECCCCcEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCeEE--E
Confidence            9875                 888899999999987555 455668874    677899999999 56544444433  4


Q ss_pred             eccCC-CCccceeee---eeEEEEecC--------------------CCeEEEeeccCCeEEEeeecccccccccccCCC
Q psy682          141 RHLGD-NFSQKLRVR---HNCFVTTVD--------------------SRFLLACGFWDNSFREPFTTMYLALQEGKFDHP  196 (330)
Q Consensus       141 ~~l~~-~~~~~~~~~---~~~~~~spD--------------------g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~  196 (330)
                      |.+.. .....+..|   ..+++|+|+                    |++ +++|+.|++||+ |++.+|+++.++.+|.
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~sgs~D~~i~i-wd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF-LLSGSRDKTIKM-WDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE-EEEEETTSEEEE-EETTTTEEEEEEECCS
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE-EEEEeCCCeEEE-EECCCCceEEEEECCC
Confidence            43321 111223333   258889997                    556 666779999999 9999999999999999


Q ss_pred             CcEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          197 NRLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       197 d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      +.|.    .+  ...+   |||.||+|++|+. +|+++++|.+|.+  .|.+|+|+|+|..||+++ |+++++|..
T Consensus       339 ~~v~~v~~~~~g~~l~---s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFIL---SCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SCEEEEEECSSSSCEE---EEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CcEEEEEEcCCCCEEE---EEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9882    22  3334   8999999999976 7899999999999  999999999999999995 889999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.5e-30  Score=240.99  Aligned_cols=237  Identities=10%  Similarity=0.076  Sum_probs=183.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |||+.||+|+||++.+++.+.++.+|...|++++|+||+++                  ..+..+.+|.+.|..++|+|+
T Consensus        29 ~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  108 (304)
T 2ynn_A           29 LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT  108 (304)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             EEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCC
Confidence            57899999999999999999999999999999999999987                  223446689999999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-C-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCc
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-A-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPV  138 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~  138 (330)
                      ++.+                 +|++.|++|++|+.... . ...+.+|.    ..+.++.|+| |+. +++++.++...+
T Consensus       109 ~~~l-----------------~sgs~D~~v~lWd~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A          109 KPYV-----------------LSGSDDLTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             SSEE-----------------EEEETTSCEEEEEGGGTTEEEEEECCCC----SCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             CCEE-----------------EEECCCCeEEEEECCCCcchhhhhcccC----CcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            9975                 88899999999998654 2 34456887    4677899999 666 666455554444


Q ss_pred             ceeccCCCCccceee-e---eeEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHH
Q psy682          139 PKRHLGDNFSQKLRV-R---HNCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLA  206 (330)
Q Consensus       139 ~~~~l~~~~~~~~~~-~---~~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~l  206 (330)
                      |....+.+. ..+.. +   ..++.++|  |+++ +++|+.|++||+ |++.+++++.++.+|.+.|.    .+  ...+
T Consensus       168 wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~D~~i~i-Wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          168 WSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKI-WDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EETTCSSCS-EEEECCCTTCEEEEEECCSTTCCE-EEEEETTSEEEE-EETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EECCCCCcc-ceeccCCcCcEEEEEEEEcCCCCE-EEEEcCCCeEEE-EeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            332212211 11111 1   23555655  7888 556678999999 99999999999999999882    12  3334


Q ss_pred             HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc--EEEEccCCeEEEEeeCC
Q psy682          207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNG  266 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~--~l~s~~~~~~~~~s~nG  266 (330)
                         |||.||+|+||+. +++++++|..|.+  .|.+++|+|+|.  ++|+|+++.++.|+...
T Consensus       245 ---s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          245 ---SGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             ---EEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             ---EEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence               9999999999976 7999999999988  899999999885  68999888888887653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=2.9e-30  Score=242.42  Aligned_cols=234  Identities=13%  Similarity=0.124  Sum_probs=178.7

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeC
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFP   60 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs   60 (330)
                      ||||.|++||||++.+++  ...++.||...|.+++|+|++.+                  ..+.....+...++.++|+
T Consensus        52 ~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s  131 (321)
T 3ow8_A           52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS  131 (321)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC
T ss_pred             EEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC
Confidence            589999999999997664  35578999999999999999876                  1112233455556667777


Q ss_pred             CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682           61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV  138 (330)
Q Consensus        61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~  138 (330)
                      |+++.                 +++++.+++|++|+...... ....+|.    ..+.++.|+||++ +++++.++..  
T Consensus       132 pdg~~-----------------l~~g~~dg~v~i~~~~~~~~~~~~~~~~----~~v~~~~~spdg~~lasg~~dg~i--  188 (321)
T 3ow8_A          132 PDSQY-----------------LATGTHVGKVNIFGVESGKKEYSLDTRG----KFILSIAYSPDGKYLASGAIDGII--  188 (321)
T ss_dssp             TTSSE-----------------EEEECTTSEEEEEETTTCSEEEEEECSS----SCEEEEEECTTSSEEEEEETTSCE--
T ss_pred             CCCCE-----------------EEEEcCCCcEEEEEcCCCceeEEecCCC----ceEEEEEECCCCCEEEEEcCCCeE--
Confidence            77776                 48889999999999876543 3334554    3567899999999 5554444433  


Q ss_pred             ceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHh
Q psy682          139 PKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWK  208 (330)
Q Consensus       139 ~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~  208 (330)
                      ..|.+.. ....+++.+.   .+++|+||+++ +++|+.|++||+ |++.++++...+.+|.+.|.    ..  ...+  
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~--  264 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKI-YDVQHANLAGTLSGHASWVLNVAFCPDDTHFV--  264 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE--
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEE-EECCCcceeEEEcCCCCceEEEEECCCCCEEE--
Confidence            3343321 1223344443   58899999998 566678999999 99999999999999999882    11  3334  


Q ss_pred             hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          209 NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                       |||.||+|+||+. +|+.++++.+|.+  .|.+|+|+|||+.||+++ ++.+++|..
T Consensus       265 -s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          265 -SSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             -EEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             -EEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence             8999999999976 7999999999999  999999999999999985 788999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=9.2e-30  Score=242.76  Aligned_cols=217  Identities=11%  Similarity=0.051  Sum_probs=162.9

Q ss_pred             CcccCCCcEEEeeccccccccee----ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF----PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl----~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      ++|+.||+|||||+.+|+.+.++    .+|.+.|++|+|||||++                                   
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-----------------------------------  141 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-----------------------------------  141 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-----------------------------------
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-----------------------------------
Confidence            47899999999999998866554    589999999999999887                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCcccee-
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQKLR-  152 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~~~-  152 (330)
                            ++|++.|++|++|+...+. +.++.+|.+    .+.++.|++|+.  +++++.++...+|..+.+... ..+. 
T Consensus       142 ------l~sgs~d~~i~iwd~~~~~~~~~~~~h~~----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~  210 (344)
T 4gqb_B          142 ------AVSGSKDICIKVWDLAQQVVLSSYRAHAA----QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-SQIGC  210 (344)
T ss_dssp             ------EEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-EECC-
T ss_pred             ------EEEEeCCCeEEEEECCCCcEEEEEcCcCC----ceEEEEecCCCCCceeeecccccccccccccccee-eeeec
Confidence                  4888999999999987555 556679974    677899999986  455444444333322222221 1121 


Q ss_pred             -ee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee---HHHHHhhhccCCCcEEEEc
Q psy682          153 -VR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS---ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       153 -~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS---t~~lW~~SgS~Dgtvkl~~  221 (330)
                       .+   ..+++++|++..++++|+.|++||+ |++.++++++++.+|.+.|  +  ..   .+.+   |||.||+|+||+
T Consensus       211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~-wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~la---sgs~D~~i~vwd  286 (344)
T 4gqb_B          211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSL-VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLA---SLSEDCSLAVLD  286 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEE-EESCC--CCEEEECCSSCEEEEEECSSSSCCEE---EEETTSCEEEEC
T ss_pred             ceeeccceeeeecCCCCcceEEeccCCcEEE-EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEE---EEeCCCeEEEEE
Confidence             11   2578899977666888889999999 9999999999999999998  2  22   3444   999999999998


Q ss_pred             ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeCCcee
Q psy682          222 TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMNGNRL  269 (330)
Q Consensus       222 ~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~nG~~l  269 (330)
                      .+...+..+.+|.+  .|++|+|||||+ +|++++ |++++.|.++-+.+
T Consensus       287 ~~~~~~~~~~~H~~--~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          287 SSLSELFRSQAHRD--FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TTCCEEEEECCCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCcEEEEcCCCC--CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            75444556899999  999999999986 677875 89999999876544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=1.8e-29  Score=241.14  Aligned_cols=240  Identities=14%  Similarity=0.133  Sum_probs=177.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C------------------cceeeeecCccEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S------------------PMMFSTVLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~------------------~l~~~~~~~d~~~   55 (330)
                      |||+.||+||+|++.+++.+.++++|..+|.+++|+|||+.       .                  ....+.+|...+.
T Consensus        82 ~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~  161 (380)
T 3iz6_a           82 VSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS  161 (380)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred             EEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence            58999999999999999999999999999999999999987       0                  0112335555555


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-C-----CCCCCCCCCCCCCccccC-CCc-e
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-S-----PSYAETPGSPPGNLPLTL-DPI-L  127 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~-----~~h~~~~~~~~~~l~fs~-D~~-l  127 (330)
                      .+.|+|+++.                .++|++.|++|++|+...+.... .     .+|.    ..+.++.+.+ |+. +
T Consensus       162 ~~~~~~~~~~----------------~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          162 SCQYVPDQET----------------RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT----ADVLSLSINSLNANMF  221 (380)
T ss_dssp             CCBCCSSSSS----------------CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC----SCEEEEEECSSSCCEE
T ss_pred             EEEEecCCCC----------------EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc----cCeEEEEeecCCCCEE
Confidence            5666665432                35889999999999997655322 1     4676    3566788865 776 5


Q ss_pred             eccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc------
Q psy682          128 THPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR------  198 (330)
Q Consensus       128 ~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~------  198 (330)
                      ++++.++...+|..+......+.+.+|.   .+++|+|||++ +++|+.|++||+ |++.+|+.++.+..|.+.      
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~l-wd~~~~~~~~~~~~~~~~~~~~~~  299 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRL-FDMRTGHQLQVYNREPDRNDNELP  299 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEE-EETTTTEEEEEECCCCSSSCCSSC
T ss_pred             EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEE-EECCCCcEEEEecccccccccccC
Confidence            6544444443333222223334455554   68999999998 566778999999 999999888777666442      


Q ss_pred             -E----EEe--HHHHHhhhccCCCcEEEEcc-cCceeeec----CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          199 -L----FSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSL----DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       199 -V----iaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL----~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                       |    +..  ...+   +|+.||+|+||+. .|+.+.++    .+|.+  .|++++|||||+.||+|+ |+++++|...
T Consensus       300 ~v~~~~~s~~g~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          300 IVTSVAFSISGRLLF---AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SCSEEEECSSSSEEE---EECTTSCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ceEEEEECCCCCEEE---EEECCCCEEEEECCCCceEEEEecccCCCCC--ceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence             2    111  3333   8999999999975 78888887    68888  999999999999999996 8899999987


Q ss_pred             Cc
Q psy682          266 GN  267 (330)
Q Consensus       266 G~  267 (330)
                      |.
T Consensus       375 ~~  376 (380)
T 3iz6_a          375 GH  376 (380)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=6.9e-29  Score=252.21  Aligned_cols=235  Identities=11%  Similarity=0.053  Sum_probs=172.8

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------C-----c--ceeeeecCccEEEEEeCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------S-----P--MMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------~-----~--l~~~~~~~d~~~~v~Fs~   61 (330)
                      +|+ +++|+||++.+++.+.+|.+|.+.|++++|||||++             .     .  ...+.+|...|..++|+|
T Consensus        35 ~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~  113 (611)
T 1nr0_A           35 YCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS  113 (611)
T ss_dssp             EEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT
T ss_pred             eCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC
Confidence            444 579999999999999999999999999999999997             0     1  123457889999999999


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCC--cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCC
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANH--QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAP  137 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~--~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~  137 (330)
                      |++.+               ++++.+.  .++|++|+. +....++.+|.+    .+.++.|+||+.  +++++.++...
T Consensus       114 dg~~l---------------~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~----~v~~v~f~p~~~~~l~s~s~D~~v~  173 (611)
T 1nr0_A          114 ESKRI---------------AAVGEGRERFGHVFLFDT-GTSNGNLTGQAR----AMNSVDFKPSRPFRIISGSDDNTVA  173 (611)
T ss_dssp             TSCEE---------------EEEECCSSCSEEEEETTT-CCBCBCCCCCSS----CEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             CCCEE---------------EEEECCCCceeEEEEeeC-CCCcceecCCCC----CceEEEECCCCCeEEEEEeCCCeEE
Confidence            99986               3444433  358999985 556677789974    677899999985  66544444443


Q ss_pred             cceeccC-CCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc-------CCCCcEE----Ee
Q psy682          138 VPKRHLG-DNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF-------DHPNRLF----SS  202 (330)
Q Consensus       138 ~~~~~l~-~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~-------gH~d~Vi----aS  202 (330)
                        .|... .....++.+|.   .+++|+|||++ +++|+.|++||+ |+..+|+.+..+.       +|.+.|.    .+
T Consensus       174 --lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s~D~~i~l-wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp  249 (611)
T 1nr0_A          174 --IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVL-YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  249 (611)
T ss_dssp             --EEETTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             --EEECCCCeEeeeeccccCceEEEEECCCCCE-EEEEECCCcEEE-EECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence              34321 11223444453   58999999998 566678999999 9998898877773       8999882    11


Q ss_pred             --HHHHHhhhccCCCcEEEEcc--------------------------------------------cCceeeecCCCCCC
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT--------------------------------------------FGDLLRSLDPPSGF  236 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~--------------------------------------------~G~ll~tL~~h~~~  236 (330)
                        ...+   |||.||+||||+.                                            .|+.++++.+|.+ 
T Consensus       250 dg~~l~---s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-  325 (611)
T 1nr0_A          250 DGTKIA---SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-  325 (611)
T ss_dssp             TSSEEE---EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-
T ss_pred             CCCEEE---EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-
Confidence              2222   5555555555543                                            2445566778988 


Q ss_pred             CCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          237 ASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                       .|.+|+|||||+.|++++ ++++++|.+..
T Consensus       326 -~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          326 -AITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence             999999999999999995 88999998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=9.6e-29  Score=227.23  Aligned_cols=235  Identities=11%  Similarity=0.146  Sum_probs=183.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+++...++.+|...|.+++|+|||++                  ..+....+|.+.+..+.|+|+
T Consensus        39 ~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  118 (312)
T 4ery_A           39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ  118 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             EEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            57899999999999999999999999999999999999987                  222335578888888889888


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      ++.+                 ++++.|++|++|+..... +....+|.    .++.++.|+||+. +++++.++.  +..
T Consensus       119 ~~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~--i~~  175 (312)
T 4ery_A          119 SNLI-----------------VSGSFDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIVSSSYDGL--CRI  175 (312)
T ss_dssp             SSEE-----------------EEEETTSCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSEEEEEETTSC--EEE
T ss_pred             CCEE-----------------EEEeCCCcEEEEECCCCEEEEEecCCC----CcEEEEEEcCCCCEEEEEeCCCc--EEE
Confidence            8864                 788889999999987554 45556786    3677899999998 555444443  334


Q ss_pred             eccCCC-Ccccee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE------EEe---HHHH
Q psy682          141 RHLGDN-FSQKLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL------FSS---ISLA  206 (330)
Q Consensus       141 ~~l~~~-~~~~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V------iaS---t~~l  206 (330)
                      +.+... ....+.    ....+++|+||+++|++ |+.|++|++ |++.+++.+..+.+|.+.+      +..   ...+
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKL-WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE-EETTTEEEE-EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEE-EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            443221 001111    11246889999999554 568999999 9999999999999998753      111   2233


Q ss_pred             HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc---CCeEEEEeeC
Q psy682          207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE---RGHIAAFTMN  265 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~---~~~~~~~s~n  265 (330)
                         +|+.||+|++|+. +++++++|.+|.+  .|.+++|+|++..+++++   ++++++|..|
T Consensus       254 ---sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          254 ---SGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---ECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ---EECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence               8999999999976 6899999999999  999999999999999984   8899999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=4.7e-29  Score=253.42  Aligned_cols=254  Identities=15%  Similarity=0.148  Sum_probs=178.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Ccceee-e------ecCccEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFS-T------VLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~-~------~~~d~~~   55 (330)
                      |||+.|++||||+..+++.+.+|.+|.+.|++|+|||||++                  ..+..+ .      +|.+.|.
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence            58999999999999999999999999999999999999987                  111122 2      6899999


Q ss_pred             EEEeCCCCCeeEeeeccce-------------ecc-------------CCcEEEEEcCCcceEEEeCCCCCC-cccCCCC
Q psy682           56 SLKFPSNSPICHVTANTYV-------------TLH-------------MPSVVTVTANHQFAINRWNPDYAA-SIQSPSY  108 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~-------------~~~-------------~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h  108 (330)
                      .++|+||++.++.+..+..             .+.             .+...+++++.+++|++|+..... .....||
T Consensus       244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh  323 (611)
T 1nr0_A          244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH  323 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence            9999999998765543220             000             011223455556666777665443 2334588


Q ss_pred             CCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC--------CC-------------------ccc----------
Q psy682          109 AETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD--------NF-------------------SQK----------  150 (330)
Q Consensus       109 ~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~--------~~-------------------~~~----------  150 (330)
                      .    +.+.+++|+||++ +++++.++...+|....+.        +.                   +.+          
T Consensus       324 ~----~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          324 N----KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG  399 (611)
T ss_dssp             S----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             C----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence            7    4677899999999 6654444433332211000        00                   000          


Q ss_pred             ----------------------------------e-------------eeeeeEEEEecCCCeEEEeeccCCeEEEeeec
Q psy682          151 ----------------------------------L-------------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTT  183 (330)
Q Consensus       151 ----------------------------------~-------------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~  183 (330)
                                                        +             .....+++|+|||++ +++|+.|++||+ |++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-lasgs~D~~v~l-wd~  477 (611)
T 1nr0_A          400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-VAVGGQDSKVHV-YKL  477 (611)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEE-EEE
T ss_pred             ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-EEEeCCCCeEEE-EEc
Confidence                                              0             001247899999998 666778999999 999


Q ss_pred             ccccc--cccccCCCCcE----EEe--HHHHHhhhccCCCcEEEEccc--Cceeee--cCCCCCCCCCcEEEeCCCccEE
Q psy682          184 MYLAL--QEGKFDHPNRL----FSS--ISLAWKNCQRDTSDVKVHTTF--GDLLRS--LDPPSGFASPESVVMSREGVIV  251 (330)
Q Consensus       184 ~~g~l--~~~l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~~--G~ll~t--L~~h~~~~~v~~v~fS~dG~~l  251 (330)
                      +++++  .+. .+|.+.|    |..  ...+   +||.|++|++|+..  |+++++  +.+|.+  .|.+|+|||||+.|
T Consensus       478 ~~~~~~~~~~-~~h~~~v~~v~fspdg~~la---s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~--~V~~v~fspdg~~l  551 (611)
T 1nr0_A          478 SGASVSEVKT-IVHPAEITSVAFSNNGAFLV---ATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRL  551 (611)
T ss_dssp             ETTEEEEEEE-EECSSCEEEEEECTTSSEEE---EEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSEE
T ss_pred             cCCceeeeec-cCCCCceEEEEECCCCCEEE---EEcCCCCEEEEEcCCCCceeeeeeeeeccc--ceeEEEECCCCCEE
Confidence            76654  344 6899887    222  3344   89999999999874  777776  345988  99999999999999


Q ss_pred             EEcc-CCeEEEEeeCC
Q psy682          252 VNYE-RGHIAAFTMNG  266 (330)
Q Consensus       252 ~s~~-~~~~~~~s~nG  266 (330)
                      |+++ |+++++|..+.
T Consensus       552 asgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          552 ATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             EEEETTSCEEEEETTC
T ss_pred             EEEECCCcEEEEECCC
Confidence            9996 88999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=5.1e-29  Score=234.23  Aligned_cols=232  Identities=15%  Similarity=0.126  Sum_probs=174.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C---------------cceeeeecCccEEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S---------------PMMFSTVLDDVCMSLK   58 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~---------------~l~~~~~~~d~~~~v~   58 (330)
                      |||+.||+|++|++.+++.+.++++|...|.+++|+|+|++       .               ......+|.+.+..+.
T Consensus        71 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~  150 (340)
T 1got_B           71 LSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR  150 (340)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEE
Confidence            58999999999999999999999999999999999999987       0               0112346666677777


Q ss_pred             eCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCC
Q psy682           59 FPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNA  136 (330)
Q Consensus        59 Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~  136 (330)
                      |++++.+                  ++++.|++|++|+...+. ..++.+|.+    .+.++.|+||+. +++++.++..
T Consensus       151 ~~~~~~l------------------~s~s~d~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~sg~~d~~v  208 (340)
T 1got_B          151 FLDDNQI------------------VTSSGDTTCALWDIETGQQTTTFTGHTG----DVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             EEETTEE------------------EEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCE
T ss_pred             ECCCCcE------------------EEEECCCcEEEEECCCCcEEEEEcCCCC----ceEEEEECCCCCEEEEEeCCCcE
Confidence            7766653                  677788999999987554 455568874    677899999998 5554444443


Q ss_pred             CcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC--CCcE----EEe--HH
Q psy682          137 PVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH--PNRL----FSS--IS  204 (330)
Q Consensus       137 ~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH--~d~V----iaS--t~  204 (330)
                        ..|.+.. ...+++..|.   .+++|+||+++ +++|+.|++||+ |++.+++.+..+..+  ...|    +..  ..
T Consensus       209 --~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~i-wd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          209 --KLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRL-FDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             --EEEETTTCSEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             --EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEE-EECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence              3444322 1223344443   58899999998 556668999999 999887766554322  2233    111  33


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      .+   +|+.||+|+||+. +++.+.+|.+|.+  .|.+|+|||||+.||+++ ++++++|.
T Consensus       285 l~---~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          285 LL---AGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EE---EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EE---EECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            34   8999999999975 7999999999999  999999999999999996 78898884

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=1.7e-28  Score=232.99  Aligned_cols=234  Identities=14%  Similarity=0.042  Sum_probs=176.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------------CcceeeeecCccEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------------SPMMFSTVLDDVCMS   56 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------------~~l~~~~~~~d~~~~   56 (330)
                      ||||.||+|++|+..+++...++..|..+|.+++|+|||+.                        .......+|.+.+..
T Consensus        80 ~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~  159 (354)
T 2pbi_B           80 VSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA  159 (354)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred             EEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence            58999999999999999999999999999999999999976                        011234467888888


Q ss_pred             EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC--Cc-eeccCC
Q psy682           57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTS  132 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~  132 (330)
                      +.|+|++..+                 ++++.|++|++|+...+. +.++.+|..    .+.++.|+|+  +. +++++.
T Consensus       160 ~~~~~~~~~l-----------------~t~s~D~~v~lwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          160 CSFTNSDMQI-----------------LTASGDGTCALWDVESGQLLQSFHGHGA----DVLCLDLAPSETGNTFVSGGC  218 (354)
T ss_dssp             EEECSSSSEE-----------------EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECCCSSCCEEEEEET
T ss_pred             EEEeCCCCEE-----------------EEEeCCCcEEEEeCCCCeEEEEEcCCCC----CeEEEEEEeCCCCCEEEEEeC
Confidence            8888888864                 788889999999987655 455568874    5667888774  44 665455


Q ss_pred             CCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC--cE----EEe-
Q psy682          133 NNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN--RL----FSS-  202 (330)
Q Consensus       133 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d--~V----iaS-  202 (330)
                      ++...+|....+. ..+.+..|.   .+++|+||+++ +++|+.|++||+ |++.+++.+..+..+..  .+    +.. 
T Consensus       219 Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~l-wd~~~~~~~~~~~~~~~~~~~~~~~~s~~  295 (354)
T 2pbi_B          219 DKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRL-YDLRADREVAIYSKESIIFGASSVDFSLS  295 (354)
T ss_dssp             TSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             CCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEE-EECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence            5544444322222 223344443   58899999998 556678999999 99987776555544332  22    111 


Q ss_pred             -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                       ...+   +|+.||+|+||+. +|+.+.+|.+|.+  .|.+|+|||||+.||+++ ++++++|.
T Consensus       296 g~~l~---~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          296 GRLLF---AGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SSEEE---EEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCEEE---EEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence             3333   8999999999986 8999999999999  999999999999999996 88898884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=4.3e-28  Score=228.73  Aligned_cols=239  Identities=12%  Similarity=0.098  Sum_probs=171.2

Q ss_pred             CcccCCCcEEEeeccccccc---ceeecCCCceeEEEeCCCCCc---------------C-----cceeeeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALL---YAFPSCDSSVRSLALSHDQKY---------------S-----PMMFSTVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l---~tl~gH~~~V~svafSpdg~~---------------~-----~l~~~~~~~d~~~~v   57 (330)
                      |||+.|++||||++.+++..   ....+|...|++|+|||||++               +     .+..+.+|.+.|..+
T Consensus        32 as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v  111 (345)
T 3fm0_A           32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV  111 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE
T ss_pred             EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE
Confidence            58999999999999876533   224799999999999999987               0     123345888999999


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCC
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS  132 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~  132 (330)
                      +|+|++..+                 ++++.|++|++|+.+...    .....+|..    .+.++.|+||+. +++++.
T Consensus       112 ~~sp~~~~l-----------------~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A          112 AWAPSGNLL-----------------ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ----DVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             EECTTSSEE-----------------EEEETTSCEEEEEECTTSCEEEEEEECCCCS----CEEEEEECSSSSCEEEEET
T ss_pred             EEeCCCCEE-----------------EEEECCCeEEEEECCCCCCeEEEEEecCcCC----CeEEEEECCCCCEEEEEeC
Confidence            999999975                 888899999999986543    334557864    577899999998 666555


Q ss_pred             CCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccc---------------ccccccc
Q psy682          133 NNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL---------------ALQEGKF  193 (330)
Q Consensus       133 ~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g---------------~l~~~l~  193 (330)
                      ++...++....+.. ...++.+|.   .+++|+|||++ +++|+.|++||+ |+....               +.+.++.
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~i-W~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRI-WRQYLPGNEQGVACSGSDPSWKCICTLS  248 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEE-eccccCCCCccceeeccCCccceeEEec
Confidence            55444443322110 112333443   58899999999 556668999999 986322               2233444


Q ss_pred             C-CCCcEE--E-e---HHHHHhhhccCCCcEEEEcccCc----------eeeecCCCCCCCCCcEEEeCCCc-cEEEEcc
Q psy682          194 D-HPNRLF--S-S---ISLAWKNCQRDTSDVKVHTTFGD----------LLRSLDPPSGFASPESVVMSREG-VIVVNYE  255 (330)
Q Consensus       194 g-H~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~~G~----------ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~  255 (330)
                      + |...|.  + +   ...+   +|+.|++|++|+.+..          ..+.+.+|.+  .|++|+|+|++ .+|||++
T Consensus       249 ~~h~~~v~~v~~~~~~~~l~---s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          249 GFHSRTIYDIAWCQLTGALA---TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ--DVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             SSCSSCEEEEEECTTTCCEE---EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS--CEEEEEECSSSTTEEEEEE
T ss_pred             CCCCCcEEEEEEecCCCEEE---EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC--cEeEeEEeCCCceEEEEcC
Confidence            4 766662  2 1   2233   8999999999976421          1344678988  99999999998 4999985


Q ss_pred             -CCeEEEEeeCCc
Q psy682          256 -RGHIAAFTMNGN  267 (330)
Q Consensus       256 -~~~~~~~s~nG~  267 (330)
                       |+++++|....+
T Consensus       324 ~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          324 DDGEVAFWKYQRP  336 (345)
T ss_dssp             TTSCEEEEEECC-
T ss_pred             CCCcEEEEEecCC
Confidence             889999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=4.5e-28  Score=230.66  Aligned_cols=236  Identities=12%  Similarity=0.098  Sum_probs=176.0

Q ss_pred             CcccC------CCcEEEeeccccccc----ceeecCCCceeEEEeCCCCCc-----------------Ccc----eeeee
Q psy682            1 MSGGD------KGIVEVWRTFNLALL----YAFPSCDSSVRSLALSHDQKY-----------------SPM----MFSTV   49 (330)
Q Consensus         1 asgs~------d~~V~lW~~~~g~~l----~tl~gH~~~V~svafSpdg~~-----------------~~l----~~~~~   49 (330)
                      ||||.      |++|++|+..+|...    ....+|...|.+|+|+||+++                 ...    ....+
T Consensus        58 as~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~  137 (357)
T 4g56_B           58 LAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYE  137 (357)
T ss_dssp             EEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECC
T ss_pred             EEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCC
Confidence            45665      788999998776543    445789999999999999987                 111    11237


Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc--
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI--  126 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~--  126 (330)
                      |++.|..++|+||+..+                 ++++.|++|++|+..... +..+.+|.    ..+.++.|++|+.  
T Consensus       138 h~~~V~~v~~spdg~~l-----------------~sgs~dg~v~iwd~~~~~~~~~~~~h~----~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          138 HDDIVKTLSVFSDGTQA-----------------VSGGKDFSVKVWDLSQKAVLKSYNAHS----SEVNCVAACPGKDTI  196 (357)
T ss_dssp             CSSCEEEEEECSSSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTCSSC
T ss_pred             CCCCEEEEEECCCCCEE-----------------EEEeCCCeEEEEECCCCcEEEEEcCCC----CCEEEEEEccCCCce
Confidence            88999999999999975                 888899999999987555 45556887    4677899999985  


Q ss_pred             eeccCCCCCCCcceeccCCCCccce-----eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--
Q psy682          127 LTHPTSNNNAPVPKRHLGDNFSQKL-----RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--  199 (330)
Q Consensus       127 l~~~s~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--  199 (330)
                      +++++.++...+|..+.+.+. ..+     .....+++|+||+..++++|+.|++||+ |++.++++++++.+|.+.|  
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~-wd~~~~~~~~~~~~~~~~v~~  274 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL-VNIKNPDSAQTSAVHSQNITG  274 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE-EESSCGGGCEEECCCSSCEEE
T ss_pred             eeeeccCCceEEEECCCCcee-eeeeeccccccccchhhhhcccceEEEeecccceeE-EECCCCcEeEEEeccceeEEE
Confidence            454344443333322212211 111     1123588899997777888889999999 9999999999999999988  


Q ss_pred             EE-e----HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-CCeEEEEeeC
Q psy682          200 FS-S----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       200 ia-S----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-~~~~~~~s~n  265 (330)
                      ++ +    .+.+   +||.||+|+||+. +|++++++ +|.+  .|++|+||| ||++||+++ |++++.|.++
T Consensus       275 l~~sp~~~~~la---sgs~D~~i~iwd~~~~~~~~~~-~H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          275 LAYSYHSSPFLA---SISEDCTVAVLDADFSEVFRDL-SHRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EEECSSSSCCEE---EEETTSCEEEECTTSCEEEEEC-CCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEEcCCCCCEEE---EEeCCCEEEEEECCCCcEeEEC-CCCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            22 2    3444   8999999999986 57777765 7988  999999998 899999986 8899999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-27  Score=224.77  Aligned_cols=239  Identities=10%  Similarity=0.042  Sum_probs=165.3

Q ss_pred             CcccCCCcEEEeecccc--ccccee-ec-CCCceeEEEeCCCCCc-------------C------------cceeeeecC
Q psy682            1 MSGGDKGIVEVWRTFNL--ALLYAF-PS-CDSSVRSLALSHDQKY-------------S------------PMMFSTVLD   51 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g--~~l~tl-~g-H~~~V~svafSpdg~~-------------~------------~l~~~~~~~   51 (330)
                      |||+.|++||||++..+  +++.++ .+ |...|++|+|+|||++             .            ++..+.+|.
T Consensus        28 as~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~  107 (330)
T 2hes_X           28 ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE  107 (330)
T ss_dssp             EEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---
T ss_pred             EEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC
Confidence            58999999999999865  455566 45 9999999999999987             0            112345788


Q ss_pred             ccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-----CcccCCCCCCCCCCCCCCccccCCCc
Q psy682           52 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-----ASIQSPSYAETPGSPPGNLPLTLDPI  126 (330)
Q Consensus        52 d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-----~~~~~~~h~~~~~~~~~~l~fs~D~~  126 (330)
                      +.|..++|+|+++.+                 ||++.|++|++|+.+..     .+..+.+|.    ..+.++.|+||+.
T Consensus       108 ~~V~~v~~sp~g~~l-----------------as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~  166 (330)
T 2hes_X          108 NEVKGVAWSNDGYYL-----------------ATCSRDKSVWIWETDESGEEYECISVLQEHS----QDVKHVIWHPSEA  166 (330)
T ss_dssp             -CEEEEEECTTSCEE-----------------EEEETTSCEEEEECCTTCCCCEEEEEECCCS----SCEEEEEECSSSS
T ss_pred             CcEEEEEECCCCCEE-----------------EEEeCCCEEEEEeccCCCCCeEEEEEeccCC----CceEEEEECCCCC
Confidence            889999999999875                 88899999999998422     134556887    4677899999998


Q ss_pred             -eeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecC--CCeEEEeeccCCeEEEeeecccc--------ccccc
Q psy682          127 -LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVD--SRFLLACGFWDNSFREPFTTMYL--------ALQEG  191 (330)
Q Consensus       127 -l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spD--g~~i~asg~~D~tirl~w~~~~g--------~l~~~  191 (330)
                       +++++.++...+|....+. .....+.+|.   .+++|+|+  +.+ +++|+.|++||+ |++..+        +....
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~s~D~~v~i-w~~~~~~~~~~~~~~~~~~  244 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR-LCSGSDDSTVRV-WKYMGDDEDDQQEWVCEAI  244 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE-EEEEETTSCEEE-EEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE-EEEEeCCCeEEE-EEecCCCccccceeEEeee
Confidence             6654555544444322111 1122344443   57889999  656 667778999999 999765        34555


Q ss_pred             ccC-CCCcEEE---e--HHHHHhhhccCCCcEEEEcc-cC--ceee-ecCCCCCCCCCcEEEeCC--CccEEEEcc-CCe
Q psy682          192 KFD-HPNRLFS---S--ISLAWKNCQRDTSDVKVHTT-FG--DLLR-SLDPPSGFASPESVVMSR--EGVIVVNYE-RGH  258 (330)
Q Consensus       192 l~g-H~d~Via---S--t~~lW~~SgS~Dgtvkl~~~-~G--~ll~-tL~~h~~~~~v~~v~fS~--dG~~l~s~~-~~~  258 (330)
                      +.+ |.+.|..   +  ...+   ||+.||+|+||+. +|  +.+. .+.+|.. ..|++|+|+|  ||++||+++ +++
T Consensus       245 ~~~~h~~~v~~v~~s~~~~l~---s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~-~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          245 LPDVHKRQVYNVAWGFNGLIA---SVGADGVLAVYEEVDGEWKVFAKRALCHGV-YEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             CCSCCSSCEEEEEECTTSCEE---EEETTSCEEEEEEETTEEEEEEEESCTTTT-SCEEEEEEC-----CCEEEEETTSE
T ss_pred             cccccccceEEEEEcCCCEEE---EEeCCCEEEEEEcCCCceEEEecccccccc-ceEEEEEEecCCCceEEEEecCCCc
Confidence            655 8888721   2  2223   8999999999986 45  3343 3467764 2799999999  799999985 889


Q ss_pred             EEEEeeCC
Q psy682          259 IAAFTMNG  266 (330)
Q Consensus       259 ~~~~s~nG  266 (330)
                      +++|.++.
T Consensus       321 v~~W~~~~  328 (330)
T 2hes_X          321 VNFWSLEK  328 (330)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEecc
Confidence            99998653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=1.2e-27  Score=221.52  Aligned_cols=230  Identities=9%  Similarity=0.080  Sum_probs=174.5

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++.++|.+|.+.|++|+|||||++                  ..+....+|+..+..++|+|+++.+             
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-------------   70 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-------------   70 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-------------
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE-------------
Confidence            456789999999999999999987                  1123345778888888899888874             


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           80 SVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                          ++++.|++|++|+.+.+. +..+.+|.+    .+.++.|+||+. +++++.++...+|...-+..+.+.+.+|.  
T Consensus        71 ----~s~s~d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           71 ----IVGSDDFRIRVFNYNTGEKVVDFEAHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             ----EEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             ----EEECCCCEEEEEECCCCcEEEEEeCCCC----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence                888899999999987555 555668974    677899999998 66655555554444332223334455554  


Q ss_pred             -eEEEEec-CCCeEEEeeccCCeEEEeeeccccccccccc-CCCCcE----EEe----HHHHHhhhccCCCcEEEEcc-c
Q psy682          156 -NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKF-DHPNRL----FSS----ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       156 -~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~-gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                       .+++|+| |+++ +++|+.|++||+ |++.+++....+. +|...|    +..    ...+   +||.||+|+||+. +
T Consensus       143 v~~v~~~p~~~~~-l~sgs~D~~v~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          143 VMCVAFNPKDPST-FASGCLDRTVKV-WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQT  217 (304)
T ss_dssp             EEEEEECTTCTTE-EEEEETTSEEEE-EETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE---EEETTSEEEEEETTT
T ss_pred             EEEEEECCCCCCE-EEEEeCCCeEEE-EECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE---EEcCCCeEEEEeCCC
Confidence             5899999 5666 667779999999 9998776655554 454545    111    2334   8999999999976 7


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      |+++++|++|..  .|.+++|+|+|++||+++ ++++++|... ++.+.++..+
T Consensus       218 ~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          218 KSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             TEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            999999999999  999999999999999995 8899999864 6777777644

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.6e-27  Score=222.52  Aligned_cols=236  Identities=12%  Similarity=0.118  Sum_probs=173.7

Q ss_pred             CcccCCCcEEEeeccc-----ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFN-----LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-----g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v   57 (330)
                      |||+.|++|++|++..     +..+.+|++|...|++++|+|||++                  ..+..+.+|.+.|+.+
T Consensus        34 ~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~  113 (319)
T 3frx_A           34 LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV  113 (319)
T ss_dssp             EEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence            5899999999999864     4467889999999999999999987                  2233456899999999


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC------c-eecc
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP------I-LTHP  130 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~------~-l~~~  130 (330)
                      .|+|++..+                 +|++.|++|++|+.++..+.++.+|.+    .+.++.|.|+.      . ++++
T Consensus       114 ~~~~~~~~l-----------------~s~s~D~~i~vwd~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~l~s~  172 (319)
T 3frx_A          114 DIDKKASMI-----------------ISGSRDKTIKVWTIKGQCLATLLGHND----WVSQVRVVPNEKADDDSVTIISA  172 (319)
T ss_dssp             EECTTSCEE-----------------EEEETTSCEEEEETTSCEEEEECCCSS----CEEEEEECCC------CCEEEEE
T ss_pred             EEcCCCCEE-----------------EEEeCCCeEEEEECCCCeEEEEeccCC----cEEEEEEccCCCCCCCccEEEEE
Confidence            999999875                 888999999999998887888889974    56678888854      3 5543


Q ss_pred             CCCCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe-
Q psy682          131 TSNNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS-  202 (330)
Q Consensus       131 s~~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS-  202 (330)
                      +.++  .+..|.+... ....+.+|.   .+++|+|||++ +++|+.|++||+ |++.+++.+..+..|..+.   +.+ 
T Consensus       173 ~~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~sp~  248 (319)
T 3frx_A          173 GNDK--MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAGKDGEIML-WNLAAKKAMYTLSAQDEVFSLAFSPN  248 (319)
T ss_dssp             ETTS--CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE-EEEEETTCEEEE-EETTTTEEEEEEECCSCEEEEEECSS
T ss_pred             eCCC--EEEEEECCcchhheeecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEE-EECCCCcEEEEecCCCcEEEEEEcCC
Confidence            3333  3444544221 112233332   58899999998 555668999999 9999999988888775432   222 


Q ss_pred             -HHHHHhhhccCCCcEEEEccc-CceeeecCCCCC------CCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          203 -ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSG------FASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~------~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                       ...    .++.++.+++|..+ +.+++.++++..      ...|.+++|||||+.||+++ ++.+++|.+.
T Consensus       249 ~~~l----a~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          249 RYWL----AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             SSEE----EEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCEE----EEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence             222    33445679999764 566677765321      12688999999999999995 8889999853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1.5e-27  Score=224.03  Aligned_cols=235  Identities=14%  Similarity=0.170  Sum_probs=167.4

Q ss_pred             CcccCCCcEEEeeccc-------ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEE
Q psy682            1 MSGGDKGIVEVWRTFN-------LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-------g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~   55 (330)
                      |||+.|++||+|++.+       ++...++.+|...|++++|+||+++                  ..+..+.+|.+.|.
T Consensus        43 ~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~  122 (343)
T 2xzm_R           43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY  122 (343)
T ss_dssp             EEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE
T ss_pred             EEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE
Confidence            5899999999999864       4567789999999999999999987                  22344568999999


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC---CCCCCCCCCCCCccccCCC-------
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP---SYAETPGSPPGNLPLTLDP-------  125 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~---~h~~~~~~~~~~l~fs~D~-------  125 (330)
                      .+.|+|++..+                 ++++.|++|++|+..+.......   +|.    +.+.++.|+|++       
T Consensus       123 ~v~~sp~~~~l-----------------~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~  181 (343)
T 2xzm_R          123 SVAFSPDNRQI-----------------LSAGAEREIKLWNILGECKFSSAEKENHS----DWVSCVRYSPIMKSANKVQ  181 (343)
T ss_dssp             EEEECSSTTEE-----------------EEEETTSCEEEEESSSCEEEECCTTTSCS----SCEEEEEECCCCCSCSCCC
T ss_pred             EEEECCCCCEE-----------------EEEcCCCEEEEEeccCCceeeeecccCCC----ceeeeeeeccccccccccC
Confidence            99999999975                 78888999999998754433332   565    467789999986       


Q ss_pred             ----ceeccCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc
Q psy682          126 ----ILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR  198 (330)
Q Consensus       126 ----~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~  198 (330)
                          .+++++.++...  .|........++..|.   .+++|+|||++ +++|+.|++||+ |++...........|...
T Consensus       182 ~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~i-wd~~~~~~~~~~~~~~~~  257 (343)
T 2xzm_R          182 PFAPYFASVGWDGRLK--VWNTNFQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLI-WDILNLTYPQREFDAGST  257 (343)
T ss_dssp             SSCCEEEEEETTSEEE--EEETTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEE-EESSCCSSCSEEEECSSC
T ss_pred             CCCCEEEEEcCCCEEE--EEcCCCceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEE-EECCCCcccceeecCCCc
Confidence                356544444333  3333222222344443   58899999999 556678999999 998433322233334444


Q ss_pred             E----EEe-HHHHHhhhccCCCcEEEEcc-cCceee--ecC-----------CCCCCCCCcEEEeCCCccEEEEcc-CCe
Q psy682          199 L----FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLR--SLD-----------PPSGFASPESVVMSREGVIVVNYE-RGH  258 (330)
Q Consensus       199 V----iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~--tL~-----------~h~~~~~v~~v~fS~dG~~l~s~~-~~~  258 (330)
                      |    +.. .-.+   +++.|++|+||+. +++.+.  ++.           +|.+  .|.+|+|+|+|+.||+|+ ++.
T Consensus       258 v~~v~~sp~~~~l---a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          258 INQIAFNPKLQWV---AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             EEEEEECSSSCEE---EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETTSE
T ss_pred             EEEEEECCCCCEE---EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCCce
Confidence            5    112 1111   5667999999976 455444  554           6766  899999999999999985 889


Q ss_pred             EEEEeeC
Q psy682          259 IAAFTMN  265 (330)
Q Consensus       259 ~~~~s~n  265 (330)
                      +++|..+
T Consensus       333 v~~w~~~  339 (343)
T 2xzm_R          333 IRTFSFE  339 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=3.3e-27  Score=214.36  Aligned_cols=211  Identities=12%  Similarity=0.093  Sum_probs=153.3

Q ss_pred             ccCCCcEEEeecccccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            3 GGDKGIVEVWRTFNLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      .+.|++|||||+.+|+.+.+++  +|...|++|+|+|+|++                                       
T Consensus        41 vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~---------------------------------------   81 (318)
T 4ggc_A           41 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY---------------------------------------   81 (318)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE---------------------------------------
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCE---------------------------------------
Confidence            3469999999999999888765  67888999999999887                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee---
Q psy682           81 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH---  155 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---  155 (330)
                        +||++.|++|++|+...+. +.+..+|..      ....+++++. +++++.++....+...........+..+.   
T Consensus        82 --l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~------~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (318)
T 4ggc_A           82 --LAVGTSSAEVQLWDVQQQKRLRNMTSHSA------RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  153 (318)
T ss_dssp             --EEEEETTSEEEEEETTTTEEEEEEECCSS------CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             --EEEEECCCcEEEeecCCceeEEEecCccc------eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce
Confidence              4888899999999987655 455558863      2345666777 44322222211111111111112233332   


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccc----cccccCCCCcE--------------EEe-----HHHHHhh---
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPNRL--------------FSS-----ISLAWKN---  209 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d~V--------------iaS-----t~~lW~~---  209 (330)
                      .+++++++++++ ++++.|++||+ |++.+++.    ......|...|              +++     ++++|+.   
T Consensus       154 ~~~~~~~~~~~l-~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          154 CGLRWAPDGRHL-ASGGNDNLVNV-WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             EEEEECTTSSEE-EEEETTSCEEE-EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             EEEEEcCCCCEE-EEEecCcceeE-EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            577899999984 55668999999 99987763    33444555544              122     6778876   


Q ss_pred             ---------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEE
Q psy682          210 ---------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIA  260 (330)
Q Consensus       210 ---------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~  260 (330)
                                                 +|+.||+|+||+. +|+++++|++|.+  .|++|+|||||+.|||++ |++++
T Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLR  309 (318)
T ss_dssp             CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEE
T ss_pred             cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEE
Confidence                                       6779999999975 7999999999999  999999999999999996 88999


Q ss_pred             EEee
Q psy682          261 AFTM  264 (330)
Q Consensus       261 ~~s~  264 (330)
                      +|.+
T Consensus       310 iWd~  313 (318)
T 4ggc_A          310 LWRC  313 (318)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=6.1e-27  Score=216.07  Aligned_cols=213  Identities=11%  Similarity=0.051  Sum_probs=156.2

Q ss_pred             CcccCCCcEEEeeccc--ccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFN--LALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~--g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |||+.|++||||++.+  ++++.+|.+|.+.|++|+|+|+  |++                                   
T Consensus        25 as~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~-----------------------------------   69 (297)
T 2pm7_B           25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-----------------------------------   69 (297)
T ss_dssp             EEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSE-----------------------------------
T ss_pred             EEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCE-----------------------------------
Confidence            5899999999999974  4778899999999999999874  444                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCCC-cc
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDNF-SQ  149 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~~-~~  149 (330)
                            +||++.|++|++|+...+.   +....+|.    ..+.++.|+||  +. +++++.++...++....+... ..
T Consensus        70 ------l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           70 ------LASCSYDGKVMIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             ------EEEEETTTEEEEEEBSSSCBCCCEEECCCS----SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             ------EEEEcCCCEEEEEEcCCCceEEEEEeecCC----CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence                  5888999999999997653   34445786    36778999998  55 665455444333322211111 12


Q ss_pred             ceeeee---eEEEEecC-------------CCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEE----Ee---
Q psy682          150 KLRVRH---NCFVTTVD-------------SRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLF----SS---  202 (330)
Q Consensus       150 ~~~~~~---~~~~~spD-------------g~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Vi----aS---  202 (330)
                      .+..|.   .+++|+|+             +++ +++|+.|++||+ |++.+++    +..++.+|.+.|.    .+   
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~-l~sgs~D~~v~l-wd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~  217 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCE-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcce-EEEEcCCCcEEE-EEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence            233332   57889997             456 666778999999 9998766    6778999999882    22   


Q ss_pred             --HHHHHhhhccCCCcEEEEcccC---ce-eeec--CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          203 --ISLAWKNCQRDTSDVKVHTTFG---DL-LRSL--DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~~G---~l-l~tL--~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                        ...+   |||.||+|+||+.+.   .. ...+  .+|.+  .|.+++|||||+.||+++ ++++++|..+
T Consensus       218 ~~~~la---s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          218 LRSYMA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSEEEE---EEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CceEEE---EEECCCcEEEEEeCCCCCccceeeeecccCCC--cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence              2334   999999999998643   22 2344  56766  899999999999999985 8899999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=6.6e-27  Score=226.91  Aligned_cols=251  Identities=13%  Similarity=0.062  Sum_probs=169.9

Q ss_pred             CcccCCCcEEEeecccccc--cceeecCCCceeEEEeCC-CCCcCcceeeeecCcc-EEEEEeCCCCCeeEeeec-----
Q psy682            1 MSGGDKGIVEVWRTFNLAL--LYAFPSCDSSVRSLALSH-DQKYSPMMFSTVLDDV-CMSLKFPSNSPICHVTAN-----   71 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~--l~tl~gH~~~V~svafSp-dg~~~~l~~~~~~~d~-~~~v~Fs~~~~v~~~~~~-----   71 (330)
                      |+|+.||+|+|||+.+++.  ...+.||.+.|++|+|+| |+++    +.++..|. |....+..+-........     
T Consensus       136 asGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~----l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  211 (435)
T 4e54_B          136 AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ----FYASSMEGTTRLQDFKGNILRVFASSDTINIW  211 (435)
T ss_dssp             EEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTE----EEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred             EEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCE----EEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence            6899999999999987654  445679999999999998 5665    44443332 222222111000000000     


Q ss_pred             -cceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCc
Q psy682           72 -TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFS  148 (330)
Q Consensus        72 -~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~  148 (330)
                       ....+.+++..+++++.+++|++|+.++..+.++.+|.+    .+.++.|+|++.  +++++.++...+|..+......
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~----~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~  287 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKK----KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA  287 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSS----CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccc----eEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence             012334455556999999999999999888888889974    677899999986  4444445544444222111110


Q ss_pred             --cceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------------EE--e--
Q psy682          149 --QKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------------FS--S--  202 (330)
Q Consensus       149 --~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------------ia--S--  202 (330)
                        .....|   ..+++|+|||++|+ +|+.|++||+ |++.+++....+.+|....                 ++  +  
T Consensus       288 ~~~~~~~h~~~v~~~~~spdg~~l~-s~~~D~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (435)
T 4e54_B          288 SFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRV-YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP  365 (435)
T ss_dssp             CCSBCCBCSSCEEECCBCTTSSEEE-EEESSSCEEE-EESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC
T ss_pred             eEEEeeeccccccceeECCCCCeeE-EEcCCCEEEE-EECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC
Confidence              111222   25778999999955 5568999999 9999888877777776432                 11  1  


Q ss_pred             --HHHHHhhhccCCCcEEEEcc-cCceeeecC-CCCCCCCCcEE-EeCCCccEEEEccCCeEEEEeeC
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRSLD-PPSGFASPESV-VMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~-~h~~~~~v~~v-~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                        ...+|  +++.+++|++|+. +|+++.+|. +|..  .|.++ +|||||++||+|+++++++|++.
T Consensus       366 d~~~~~~--~~~~~~~i~iwd~~~g~~~~~l~~~~~~--~v~s~~~fspdg~~lasg~d~~i~iW~~~  429 (435)
T 4e54_B          366 DPNFKSC--TPYELRTIDVFDGNSGKMMCQLYDPESS--GISSLNEFNPMGDTLASAMGYHILIWSQQ  429 (435)
T ss_dssp             CTTSCCS--STTCCCCEEEECSSSCCEEEEECCSSCC--CCCCEEEECTTSSCEEEECSSEEEECCCC
T ss_pred             CCCeEEE--EecCCCEEEEEECCCCcEEEEEeCCCCC--cEEEEEEECCCCCEEEEEcCCcEEEEECC
Confidence              23332  5677889999975 799999986 4555  78887 69999999999999999999754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=6.4e-27  Score=223.64  Aligned_cols=221  Identities=8%  Similarity=0.002  Sum_probs=147.1

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +|+.|++||+|++..++....      .+....+..         ...+++.+..++|||||+.               +
T Consensus        99 s~~~d~~~r~~~~~~~~~~~~------~~~~~~~~~---------~~~~~~~~~~v~fSpDg~~---------------l  148 (365)
T 4h5i_A           99 QGKGNKHLRKFKYDKVNDQLE------FLTSVDFDA---------STNADDYTKLVYISREGTV---------------A  148 (365)
T ss_dssp             HTSCCCCEEEEEEETTTTEEE------EEEEECSSC---------CCCTTCCEEEEEECTTSSC---------------E
T ss_pred             EecCCCcEEEEEecCCCceEE------Eeeeeceee---------cCCcccCEEEEEEcCCCCE---------------E
Confidence            577899999999865432111      111111111         1122333444444444444               3


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CC-Cc-cceee---ee
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DN-FS-QKLRV---RH  155 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~-~~-~~~~~---~~  155 (330)
                      ++||++.|++|++|+...........|..    .+.++.|+||+++++.++  +.....+... +. .. .....   ..
T Consensus       149 a~as~~~d~~i~iwd~~~~~~~~~~~~~~----~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          149 AIASSKVPAIMRIIDPSDLTEKFEIETRG----EVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             EEEESCSSCEEEEEETTTTEEEEEEECSS----CCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             EEEECCCCCEEEEeECCCCcEEEEeCCCC----ceEEEEEccCCceEEecc--ceeEEEEEeccCcceeeeecCCCCCCE
Confidence            67899999999999998776666566753    577899999999543222  2233332221 11 10 01111   23


Q ss_pred             eEEEEecCCCeEEEeeccCC----eEEEeeecccccc----cccccCCCCcEE--E-e---HHHHHhhhccCCCcEEEEc
Q psy682          156 NCFVTTVDSRFLLACGFWDN----SFREPFTTMYLAL----QEGKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~----tirl~w~~~~g~l----~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~  221 (330)
                      .+++|+|||++++++ +.|+    ++++ |++..++.    ...+.+|...|.  + |   ...+   +||.||+|+||+
T Consensus       223 ~~v~fspdg~~l~~~-s~d~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la---sgs~D~~V~iwd  297 (365)
T 4h5i_A          223 SKINFIADDTVLIAA-SLKKGKGIVLTK-ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV---LASNDNSIALVK  297 (365)
T ss_dssp             EEEEEEETTEEEEEE-EESSSCCEEEEE-EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE---EEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEE-ecCCcceeEEee-cccccceecceeeeeecCCCCCeEeEEECCCCCceE---EEcCCCEEEEEE
Confidence            578899999995554 4676    5788 98865532    456788988872  1 2   4444   899999999997


Q ss_pred             c-cCceeee-cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          222 T-FGDLLRS-LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       222 ~-~G~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      . +|+++++ +++|.+  .|++|+|||||++|||++ |+++++|.+.
T Consensus       298 ~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          298 LKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             TTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            6 7999988 589999  999999999999999996 8899999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=1.4e-26  Score=222.04  Aligned_cols=234  Identities=15%  Similarity=0.137  Sum_probs=171.5

Q ss_pred             cccCCCcEEEeecccccccceeecCCC------------------ceeEEEeCCCCCc------------------Ccce
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDS------------------SVRSLALSHDQKY------------------SPMM   45 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~------------------~V~svafSpdg~~------------------~~l~   45 (330)
                      +|+ |++|++|++.+|+.+.++.+|..                  .|++|+|||||+.                  ..+.
T Consensus        81 ~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  159 (393)
T 1erj_A           81 TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM  159 (393)
T ss_dssp             EEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            444 78999999999999999887753                  4999999999987                  1223


Q ss_pred             eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-C
Q psy682           46 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-D  124 (330)
Q Consensus        46 ~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D  124 (330)
                      .+.+|...|..++|+|++..+                 ++++.|++|++|+...+.......|.    +.+.++.|+| |
T Consensus       160 ~~~~h~~~v~~~~~~p~~~~l-----------------~s~s~d~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~  218 (393)
T 1erj_A          160 ILQGHEQDIYSLDYFPSGDKL-----------------VSGSGDRTVRIWDLRTGQCSLTLSIE----DGVTTVAVSPGD  218 (393)
T ss_dssp             EECCCSSCEEEEEECTTSSEE-----------------EEEETTSEEEEEETTTTEEEEEEECS----SCEEEEEECSTT
T ss_pred             EEccCCCCEEEEEEcCCCCEE-----------------EEecCCCcEEEEECCCCeeEEEEEcC----CCcEEEEEECCC
Confidence            456889999999999999875                 78888999999999766544333343    3567899999 8


Q ss_pred             Cc-eeccCCCCCCCcceeccCCCCccce-------eee---eeEEEEecCCCeEEEeeccCCeEEEeeecccc-------
Q psy682          125 PI-LTHPTSNNNAPVPKRHLGDNFSQKL-------RVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL-------  186 (330)
Q Consensus       125 ~~-l~~~s~~~~~~~~~~~l~~~~~~~~-------~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g-------  186 (330)
                      +. +++++.++...+|....+.. .+.+       .+|   ..+++|+|||++ +++|+.|++||+ |++.++       
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~-wd~~~~~~~~~~~  295 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKL-WNLQNANNKSDSK  295 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEE-EEC----------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEE-EECCCCCCccccc
Confidence            88 55544444433332221111 1111       122   357899999999 556678999999 998653       


Q ss_pred             -----cccccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC------Cc
Q psy682          187 -----ALQEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR------EG  248 (330)
Q Consensus       187 -----~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~------dG  248 (330)
                           .+..++.+|.+.|..   +   ...+   |||.||+|++|+. +|+.+.+|.+|.+  .|.+|+|+|      +|
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~p~~  370 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYIL---SGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVANGSSLGPEY  370 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEE---EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECSSCTTCTTC
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEE---EEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecCCcCcCCCC
Confidence                 345678899998832   1   2233   9999999999975 7999999999999  999999886      79


Q ss_pred             cEEEEcc-CCeEEEEeeC
Q psy682          249 VIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       249 ~~l~s~~-~~~~~~~s~n  265 (330)
                      .+||+++ |+++++|...
T Consensus       371 ~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             CEEEEECCCCcEEECccc
Confidence            9999995 8899999854

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=1.3e-26  Score=224.26  Aligned_cols=237  Identities=10%  Similarity=0.086  Sum_probs=181.4

Q ss_pred             EEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeee
Q psy682            9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTA   70 (330)
Q Consensus         9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~   70 (330)
                      .+.|.. ......++.||.+.|++++|+|++++                  .....+.+|.+.|..++|+|+++.+    
T Consensus        91 ~~~~~~-~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l----  165 (410)
T 1vyh_C           91 PKEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL----  165 (410)
T ss_dssp             -CCCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE----
T ss_pred             cccccc-CCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE----
Confidence            344543 33556789999999999999999887                  2234466899999999999999975    


Q ss_pred             ccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc
Q psy682           71 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS  148 (330)
Q Consensus        71 ~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~  148 (330)
                                   ++++.|++|++|+.++.. +.++.+|..    .+.++.|+||+. +++++.++...+|....+. ..
T Consensus       166 -------------~sgs~D~~i~iwd~~~~~~~~~~~~h~~----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~  227 (410)
T 1vyh_C          166 -------------ASCSADMTIKLWDFQGFECIRTMHGHDH----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CV  227 (410)
T ss_dssp             -------------EEEETTSCCCEEETTSSCEEECCCCCSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred             -------------EEEeCCCeEEEEeCCCCceeEEEcCCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EE
Confidence                         888899999999987655 556668974    677899999998 6654444443333322222 12


Q ss_pred             cceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--H----------------
Q psy682          149 QKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--I----------------  203 (330)
Q Consensus       149 ~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t----------------  203 (330)
                      .++.+|.   .+++++|||++ +++|+.|++||+ |++.+++....+.+|...|-    ..  .                
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~~-l~s~s~D~~v~v-wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRV-WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             EEEeCCCccEEEEEECCCCCE-EEEEcCCCeEEE-EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            3344443   57889999998 555668999999 99999999999999999882    11  0                


Q ss_pred             ----HHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc
Q psy682          204 ----SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN  275 (330)
Q Consensus       204 ----~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~  275 (330)
                          ..+   +||.||+|+||+. +|+.+++|.+|.+  .|.+|+|+|+|+.|++++ ++.++.|.. +|+.+..+..|
T Consensus       306 ~~g~~l~---sgs~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h  379 (410)
T 1vyh_C          306 KPGPFLL---SGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  379 (410)
T ss_dssp             --CCEEE---EEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             CCCCEEE---EEeCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence                122   8999999999985 7999999999999  999999999999999985 888999976 45666666544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=215.36  Aligned_cols=229  Identities=14%  Similarity=0.107  Sum_probs=168.5

Q ss_pred             ccccceeecCCCceeEEEeCCCCC----c----------------Cc----ceeeeecCccEEEEEeCCCCCeeEeeecc
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQK----Y----------------SP----MMFSTVLDDVCMSLKFPSNSPICHVTANT   72 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~----~----------------~~----l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~   72 (330)
                      |.+.+.+++|.+.|++|+|+|+++    +                ..    ...+.+|...|..+.|+|+++++      
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l------   95 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA------   95 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEE------
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEE------
Confidence            566677899999999999998643    2                00    11244788888888888888864      


Q ss_pred             ceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC-Ccc
Q psy682           73 YVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQ  149 (330)
Q Consensus        73 ~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~-~~~  149 (330)
                                 +|++.|++|++|+...+. +....+|.    ..+.++.|+||++ +++++.++.  +..+.+... ...
T Consensus        96 -----------~s~s~D~~i~lWd~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~g~~dg~--v~i~~~~~~~~~~  158 (321)
T 3ow8_A           96 -----------ASSSLDAHIRLWDLENGKQIKSIDAGP----VDAWTLAFSPDSQYLATGTHVGK--VNIFGVESGKKEY  158 (321)
T ss_dssp             -----------EEEETTSEEEEEETTTTEEEEEEECCT----TCCCCEEECTTSSEEEEECTTSE--EEEEETTTCSEEE
T ss_pred             -----------EEEeCCCcEEEEECCCCCEEEEEeCCC----ccEEEEEECCCCCEEEEEcCCCc--EEEEEcCCCceeE
Confidence                       889999999999987554 44444664    3567899999999 554333332  333333211 111


Q ss_pred             ceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEE
Q psy682          150 KLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       150 ~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~  220 (330)
                      .+..+   ..+++|+|||++ +++|+.|++|++ |++.++++++.+.+|...|  +  ..  ...+   +||.||+|+||
T Consensus       159 ~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~---s~s~dg~i~iw  233 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGKY-LASGAIDGIINI-FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV---TASDDGYIKIY  233 (321)
T ss_dssp             EEECSSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEEEECCCSSCCCEEEECTTSCEEE---EECTTSCEEEE
T ss_pred             EecCCCceEEEEEECCCCCE-EEEEcCCCeEEE-EECCCCcEEEEEcccCCceeEEEEcCCCCEEE---EEcCCCeEEEE
Confidence            12222   257889999999 556678999999 9999999999999999877  2  22  3334   89999999999


Q ss_pred             cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      +. +++++++|.+|.+  .|.+|+|+|||+.||+++ ++++++|..+ |+.+.++..+
T Consensus       234 d~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h  289 (321)
T 3ow8_A          234 DVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH  289 (321)
T ss_dssp             ETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence            76 6899999999999  999999999999999995 8899999874 6777776544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=7.7e-26  Score=213.24  Aligned_cols=239  Identities=10%  Similarity=0.059  Sum_probs=175.8

Q ss_pred             CcccCCCcEEEeecccccccceee--cCCCceeEEEeCC-CCCc-----------------Ccceeee---ecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP--SCDSSVRSLALSH-DQKY-----------------SPMMFST---VLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~--gH~~~V~svafSp-dg~~-----------------~~l~~~~---~~~d~~~~v   57 (330)
                      |+|+.||+|++|++.+++....+.  +|...|.+++|+| +++.                 ..+....   ++...+..+
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  169 (383)
T 3ei3_B           90 AVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCV  169 (383)
T ss_dssp             EEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEE
T ss_pred             EEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEE
Confidence            578999999999999888777765  7999999999999 5555                 1111121   334668888


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCC
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNN  135 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~  135 (330)
                      +|+|+++.+                 ++++.+++|++|+.++..+.+..+|.    ..+.++.|+||+.  +++++.++.
T Consensus       170 ~~~~~~~~l-----------------~~~~~d~~i~i~d~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          170 DVSVSRQML-----------------ATGDSTGRLLLLGLDGHEIFKEKLHK----AKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEETTTTEE-----------------EEEETTSEEEEEETTSCEEEEEECSS----SCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EECCCCCEE-----------------EEECCCCCEEEEECCCCEEEEeccCC----CcEEEEEECCCCCCEEEEEeCCCE
Confidence            888888864                 78888999999999877777777887    4677899999997  554344443


Q ss_pred             CCcceeccC---CCCccceeee---eeEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------
Q psy682          136 APVPKRHLG---DNFSQKLRVR---HNCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------  199 (330)
Q Consensus       136 ~~~~~~~l~---~~~~~~~~~~---~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------  199 (330)
                      ..+|.....   ......+ .+   ..+++|+| ||++|+ +++.|++|++ |++.+++..+.+.+|....         
T Consensus       229 i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~-~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (383)
T 3ei3_B          229 VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL-TTDQRNEIRV-YSSYDWSKPDQIIIHPHRQFQHLTPIKA  305 (383)
T ss_dssp             EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE-EEESSSEEEE-EETTBTTSCSEEEECCBCCCTTSCCCCC
T ss_pred             EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE-EEcCCCcEEE-EECCCCccccccccccccccccccceEE
Confidence            333322221   1111112 22   25889999 999955 5568999999 9999999888888775321         


Q ss_pred             --------E-E--e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          200 --------F-S--S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       200 --------i-a--S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                              + +  + --++   +||.||+|+||+. +|+++++|.+|.....+..++|+|||++||+++++.+++|.++.
T Consensus       306 ~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          306 TWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             EECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             eccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence                    1 1  1 1122   7899999999986 79999999985422378888999999999999999999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.9e-26  Score=223.73  Aligned_cols=246  Identities=11%  Similarity=0.035  Sum_probs=173.5

Q ss_pred             CCcEEEeecccc---cccceeecCCCceeEEEeCCCCCcCcceeee--ecCccEEEEEeCCC----CCeeEeeeccc--e
Q psy682            6 KGIVEVWRTFNL---ALLYAFPSCDSSVRSLALSHDQKYSPMMFST--VLDDVCMSLKFPSN----SPICHVTANTY--V   74 (330)
Q Consensus         6 d~~V~lW~~~~g---~~l~tl~gH~~~V~svafSpdg~~~~l~~~~--~~~d~~~~v~Fs~~----~~v~~~~~~~~--~   74 (330)
                      ..+|+||+..++   ++++++.+|...|..|+|+||-.- .+-..-  .+...+.++.|+||    +++++.+.++.  .
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~  140 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN-LVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL  140 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS-CEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc-eeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence            368999999999   899999999999999999998543 221221  44557999999999    99998877654  2


Q ss_pred             eccCCcEEEEE--cCCcceEEEeCCCC--CCcccCCCCCCCCCCCCCCccccC---CCc-eeccCCCCCCCcceeccCCC
Q psy682           75 TLHMPSVVTVT--ANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTL---DPI-LTHPTSNNNAPVPKRHLGDN  146 (330)
Q Consensus        75 ~~~~~~~v~vS--~~~~~tv~lW~~~~--~~~~~~~~h~~~~~~~~~~l~fs~---D~~-l~~~s~~~~~~~~~~~l~~~  146 (330)
                      .+ +.+....+  .+.+.+|++|+...  ..+....+|+.    .+..++|++   |+. +++++.+++.++|....+. 
T Consensus       141 ~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-  214 (356)
T 2w18_A          141 GL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-  214 (356)
T ss_dssp             EE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-
T ss_pred             ec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-
Confidence            34 34555555  34699999999833  33445557763    566789998   566 6654555544444433332 


Q ss_pred             Cccceeeee------eEEEEecCCCeE-----------EEeeccCCeEEEeeecccccccccc-----cCCCCcEEEe--
Q psy682          147 FSQKLRVRH------NCFVTTVDSRFL-----------LACGFWDNSFREPFTTMYLALQEGK-----FDHPNRLFSS--  202 (330)
Q Consensus       147 ~~~~~~~~~------~~~~~spDg~~i-----------~asg~~D~tirl~w~~~~g~l~~~l-----~gH~d~ViaS--  202 (330)
                      ...++.++.      .+++|+|||+++           +++|+.|++||+ |+..+|+.+.++     .||.+.++.-  
T Consensus       215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl-Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV-INPKTTLSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE-EETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred             EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE-EECCCCEEEEEEEeeccCCCcceeEcccc
Confidence            334454332      367899999986           367889999999 999999987765     4887765321  


Q ss_pred             --HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCc-EEEeCCCccEEEEcc-CCeEEEEee
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPE-SVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~-~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                        ...+   |||.|||||||+. +|+++++|++|.+  .|. +|+|||||++||||+ |+++++|..
T Consensus       294 sg~~lA---SgS~DgTIkIWDl~tGk~l~tL~gH~~--~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 KDHCAA---AILTSGTIAIWDLLLGQCTALLPPVSD--QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTEEE---EEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEE---EEcCCCcEEEEECCCCcEEEEecCCCC--CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence              1223   8999999999976 7999999999988  555 699999999999996 889999964

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=5.9e-27  Score=218.35  Aligned_cols=213  Identities=11%  Similarity=0.058  Sum_probs=156.3

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |||+.|++||||++.+++  ++.+|.+|.+.|++|+|+|+  |++                                   
T Consensus        29 asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~-----------------------------------   73 (316)
T 3bg1_A           29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI-----------------------------------   73 (316)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSC-----------------------------------
T ss_pred             EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCE-----------------------------------
Confidence            689999999999998764  57789999999999999873  555                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCCC--c
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDNF--S  148 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~~--~  148 (330)
                            ++|++.|++|++|+...+.   ..+..+|.+    .+.++.|+||  +. +++++.++...++....+...  .
T Consensus        74 ------l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           74 ------LASCSYDRKVIIWREENGTWEKSHEHAGHDS----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             ------EEEEETTSCEEEECCSSSCCCEEEEECCCSS----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             ------EEEEECCCEEEEEECCCCcceEEEEccCCCC----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence                  4888899999999987542   334568874    6778999998  55 665455544444332211111  1


Q ss_pred             cceeee---eeEEEEecC-----------------CCeEEEeeccCCeEEEeeecccc---cccccccCCCCcEE--E--
Q psy682          149 QKLRVR---HNCFVTTVD-----------------SRFLLACGFWDNSFREPFTTMYL---ALQEGKFDHPNRLF--S--  201 (330)
Q Consensus       149 ~~~~~~---~~~~~~spD-----------------g~~i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d~Vi--a--  201 (330)
                      ..+..|   ..+++|+|+                 +++ +++|+.|++||+ |+++.+   +++..+.+|.+.|.  +  
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~D~~v~l-Wd~~~~~~~~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR-FASGGCDNLIKL-WKEEEDGQWKEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB-EECCBTTSBCCE-EEECTTSCEEEEECCBCCSSCEEEEECC
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccce-EEEecCCCeEEE-EEeCCCCccceeeecccCCCceEEEEec
Confidence            112222   256778887                 356 677789999999 999654   47788999999882  2  


Q ss_pred             e------HHHHHhhhccCCCcEEEEcccC----c-eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          202 S------ISLAWKNCQRDTSDVKVHTTFG----D-LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       202 S------t~~lW~~SgS~Dgtvkl~~~~G----~-ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      +      ...+   |||.||+|+||+.+.    + ..+.+.+|.+  .|++|+|||||++||+++ ++++++|..+
T Consensus       222 p~~~~~~~~la---s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          222 PSIGLPTSTIA---SCSQDGRVFIWTCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCSSCSCCEEE---EEETTCEEEEEECSSTTCCCCBCCEEEECSS--CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCCCceEE---EEcCCCeEEEEEccCccccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            1      2234   999999999997643    2 2345667777  999999999999999985 8899999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=220.71  Aligned_cols=241  Identities=10%  Similarity=0.037  Sum_probs=164.7

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCCCCc---Cc----------c---------------eeeeecCccEEEEEe
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---SP----------M---------------MFSTVLDDVCMSLKF   59 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---~~----------l---------------~~~~~~~d~~~~v~F   59 (330)
                      ..|.|++....+    ..|...|.+++|||||++   ..          +               .....++..|..++|
T Consensus        15 ~~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           15 AAREWNLPPNAP----ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             --------CCSC----SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred             cccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence            357888765332    468888999999999988   00          0               001134567888999


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-c----CCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-Q----SPSYAETPGSPPGNLPLTLDPI-LTHPTSN  133 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~----~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~  133 (330)
                      +||+.+                  ++++.|++|++|+.+.+... .    ..+|.    +.+.++.|+||++ +++++.+
T Consensus        91 s~d~~l------------------~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~----~~V~~v~~spdg~~l~sgs~d  148 (344)
T 4gqb_B           91 VGERGI------------------LVASDSGAVELWELDENETLIVSKFCKYEHD----DIVSTVSVLSSGTQAVSGSKD  148 (344)
T ss_dssp             ETTTEE------------------EEEETTSEEEEEEECTTSSCEEEEEEEECCS----SCEEEEEECTTSSEEEEEETT
T ss_pred             eCCCeE------------------EEEECCCEEEEEeccCCCceeEeeccccCCC----CCEEEEEECCCCCEEEEEeCC
Confidence            998764                  67778999999998765422 2    23787    4678899999999 6654555


Q ss_pred             CCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE--E--Ee--
Q psy682          134 NNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL--F--SS--  202 (330)
Q Consensus       134 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V--i--aS--  202 (330)
                      +...+|....+ ....++.+|.   .+++|+||++.++++|+.|++||+ |++.+++....+..  |...+  +  .+  
T Consensus       149 ~~i~iwd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~  226 (344)
T 4gqb_B          149 ICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL-WDTRCPKPASQIGCSAPGYLPTSLAWHPQQ  226 (344)
T ss_dssp             SCEEEEETTTT-EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE-EETTSSSCEEECC----CCCEEEEEECSSC
T ss_pred             CeEEEEECCCC-cEEEEEcCcCCceEEEEecCCCCCceeeecccccccc-ccccccceeeeeecceeeccceeeeecCCC
Confidence            54444433322 2223455554   588999999877888889999999 99999988776643  33333  1  11  


Q ss_pred             -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeCCceeeeccCc-cc
Q psy682          203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMNGNRLRHESHN-DN  277 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~nG~~las~~~~-~d  277 (330)
                       .+.+   +|+.||+|+||+. +|+++++|.+|.+  .|++|+||||| ++||+++ |+++++|..+...+.....| +.
T Consensus       227 ~~~l~---sg~~dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~  301 (344)
T 4gqb_B          227 SEVFV---FGDENGTVSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDF  301 (344)
T ss_dssp             TTEEE---EEETTSEEEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSC
T ss_pred             CcceE---EeccCCcEEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCC
Confidence             3334   8999999999975 7999999999999  99999999998 5788885 88999998876666555544 44


Q ss_pred             cccc
Q psy682          278 LQEL  281 (330)
Q Consensus       278 VkEL  281 (330)
                      |..+
T Consensus       302 V~~v  305 (344)
T 4gqb_B          302 VRDA  305 (344)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=4.8e-26  Score=208.59  Aligned_cols=232  Identities=13%  Similarity=0.068  Sum_probs=162.6

Q ss_pred             CcccCCCcEEEeecccc-----cccceeecCCCceeEEEeCCCCCcCcceeee----------------------ecCcc
Q psy682            1 MSGGDKGIVEVWRTFNL-----ALLYAFPSCDSSVRSLALSHDQKYSPMMFST----------------------VLDDV   53 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g-----~~l~tl~gH~~~V~svafSpdg~~~~l~~~~----------------------~~~d~   53 (330)
                      ||||.||+||||++.++     .+..++.+|...|.+++|+|||++    +.+                      .+...
T Consensus        55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~----l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF----ALSGSWDGTLRLWDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE----EEEEcccccceEEeecccceeeeecCCCCc
Confidence            58999999999998754     356789999999999999999987    323                      33334


Q ss_pred             EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc--ccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682           54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS--IQSPSYAETPGSPPGNLPLTLDPI-LTHP  130 (330)
Q Consensus        54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~--~~~~~h~~~~~~~~~~l~fs~D~~-l~~~  130 (330)
                      +....++++++.                 +++++.|+.+++|+......  ....+|.    +.+..+.|++++. ...+
T Consensus       131 ~~~~~~~~~~~~-----------------l~s~s~d~~~~~~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          131 VLSVAFSSDNRQ-----------------IVSGSRDKTIKLWNTLGVCKYTVQDESHS----EWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEEEEECTTSSC-----------------EEEEETTSCEEEECTTSCEEEEECSSSCS----SCEEEEEECSCSSSCEEE
T ss_pred             eeEEEEeecCcc-----------------ceeecCCCeEEEEEeCCCceEEEEecccc----CcccceEEccCCCCcEEE
Confidence            444445555554                 47888899999999865543  3334776    3566788888875 2212


Q ss_pred             CCCCCCCcceeccCCC-Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-E-Ee--
Q psy682          131 TSNNNAPVPKRHLGDN-FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-F-SS--  202 (330)
Q Consensus       131 s~~~~~~~~~~~l~~~-~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS--  202 (330)
                      +++.+..+..+.+... ....+..|.   .+++|+||+++ +++|+.|++|++ |++.+++.+..+.+|..+. + .+  
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~~~~  267 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAML-WDLNEGKHLYTLDGGDIINALCFSPN  267 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTCEEEE-EETTTTEEEEEEECSSCEEEEEECSS
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEeCCCeEEE-EEeccCceeeeecCCceEEeeecCCC
Confidence            2333333344443221 112233332   57889999998 555668999999 9999999888887776533 1 12  


Q ss_pred             HHHHHhhhccCCCcEEEEccc-CceeeecC---------CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          203 ISLAWKNCQRDTSDVKVHTTF-GDLLRSLD---------PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~---------~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      ...+   +++.|++|+||+.+ +.++.++.         +|..  .|.+|+|||||+.||+|+ |+.+++|.+
T Consensus       268 ~~~~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          268 RYWL---CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SSEE---EEEETTEEEEEETTTTEEEEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             Ccee---eccCCCEEEEEECCCCeEEEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            2222   78889999999874 55566554         4666  899999999999999985 889999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=1e-25  Score=213.66  Aligned_cols=240  Identities=8%  Similarity=-0.022  Sum_probs=174.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+++.+..+.+|...|++++|+|||++                  ..+..+.+|...|..++|+|+
T Consensus       113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence            57899999999999999999999999999999999999987                  223445688899999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCC--------------------CCCCCCCccc
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAET--------------------PGSPPGNLPL  121 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~--------------------~~~~~~~l~f  121 (330)
                      +..+                 ++++.|++|++|+..... +.....|...                    -...+.++.|
T Consensus       193 ~~~l-----------------~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          193 GRNV-----------------LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             TTEE-----------------EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             CCEE-----------------EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            9875                 788889999999987554 3333332211                    0246778999


Q ss_pred             cCCCc-eeccCCCCCCCcceeccCC--CCcccee---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc-ccccccC
Q psy682          122 TLDPI-LTHPTSNNNAPVPKRHLGD--NFSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-LQEGKFD  194 (330)
Q Consensus       122 s~D~~-l~~~s~~~~~~~~~~~l~~--~~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-l~~~l~g  194 (330)
                      +||+. +++++.++.  +..+.+..  .......   ....+++|+||++.++++|+.|++|++ |++.+++ ++..+.+
T Consensus       256 s~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v-wd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          256 GTYGKYVIAGHVSGV--ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ-WDLRSPECPVGEFLI  332 (420)
T ss_dssp             SCTTEEEEEEETTSC--EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE-EETTCTTSCSEEEEE
T ss_pred             cCCCCEEEEEcCCCe--EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE-EEcCCCcCchhhhhc
Confidence            99998 554344433  33444322  1111111   123588999999934667778999999 9998875 4777777


Q ss_pred             -CCCcE--EEe---HHHHHhhhccCCCcEEEEcccC----------ceeeecCCCCCCCCCcEEEeCCCcc----EEEEc
Q psy682          195 -HPNRL--FSS---ISLAWKNCQRDTSDVKVHTTFG----------DLLRSLDPPSGFASPESVVMSREGV----IVVNY  254 (330)
Q Consensus       195 -H~d~V--iaS---t~~lW~~SgS~Dgtvkl~~~~G----------~ll~tL~~h~~~~~v~~v~fS~dG~----~l~s~  254 (330)
                       |...|  +++   ...+   +||.||+|+||+...          .....+.+|.+  .|..++|+|||+    +++.|
T Consensus       333 ~~~~~v~~~~~~~~~~l~---s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~g~l~a~g  407 (420)
T 3vl1_A          333 NEGTPINNVYFAAGALFV---SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD--AVSQFCYVSDDESNGEVLEVG  407 (420)
T ss_dssp             STTSCEEEEEEETTEEEE---EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC--CCCEEEEECCSSSSCEEEEEE
T ss_pred             cCCCCceEEEeCCCCEEE---EecCCccEEEEeccCCCCCccceeccCccEEccCCc--ceEEEEEccCCCCcceEEEEc
Confidence             45555  222   2333   899999999998643          22334667777  899999999999    88888


Q ss_pred             cCCeEEEEeeC
Q psy682          255 ERGHIAAFTMN  265 (330)
Q Consensus       255 ~~~~~~~~s~n  265 (330)
                      +++.+..|...
T Consensus       408 ~~g~~~~~~~~  418 (420)
T 3vl1_A          408 KNNFCALYNLS  418 (420)
T ss_dssp             TTTEEEEEESC
T ss_pred             CCceEEEEecc
Confidence            99999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-26  Score=235.21  Aligned_cols=225  Identities=11%  Similarity=-0.017  Sum_probs=164.9

Q ss_pred             CcccCCCcEEEeeccccccc----ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTFNLALL----YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l----~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |||+.|++||||++.++++.    .++.+|.+.|++|+|+|++..                  ++++.+           
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~------------------~~~~~~-----------  227 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA------------------PHLVGC-----------  227 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCC------------------SSSSCE-----------
T ss_pred             ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCC------------------CCCCce-----------
Confidence            57899999999999877643    457889999999999997432                  233443           


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCc------------ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAAS------------IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~------------~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~  144 (330)
                            +||++.|++|++|+.+.+..            .++.+|.    ..+.+++|+++..+++++.++...+|....+
T Consensus       228 ------LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~----~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~  297 (524)
T 2j04_B          228 ------LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD----SLITTFDFLSPTTVVCGFKNGFVAEFDLTDP  297 (524)
T ss_dssp             ------EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT----TCEEEEEESSSSEEEEEETTSEEEEEETTBC
T ss_pred             ------EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC----CCEEEEEecCCCeEEEEeCCCEEEEEECCCC
Confidence                  48888999999999975532            1345776    4677899999888887666665554433322


Q ss_pred             CCCccceeeee---eEE--EEecCC-CeEEEeeccCCeEEEeeecccccccccccCCCCc--E----EEe--HHHHHhhh
Q psy682          145 DNFSQKLRVRH---NCF--VTTVDS-RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L----FSS--ISLAWKNC  210 (330)
Q Consensus       145 ~~~~~~~~~~~---~~~--~~spDg-~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V----iaS--t~~lW~~S  210 (330)
                      ......+.+|.   .++  +++||| ++ +++|+.|++||| |++.+++...++.+|...  |    +.+  ...+   +
T Consensus       298 ~~~~~~~~~H~~~V~sv~~~~s~~g~~~-laS~S~D~tvkl-WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~---s  372 (524)
T 2j04_B          298 EVPSFYDQVHDSYILSVSTAYSDFEDTV-VSTVAVDGYFYI-FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI---Y  372 (524)
T ss_dssp             SSCSEEEECSSSCEEEEEEECCTTSCCE-EEEEETTSEEEE-ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE---E
T ss_pred             CCceEEeecccccEEEEEEEcCCCCCeE-EEEeccCCeEEE-EECCCCCcccccccccccCcccceEeCCCcCeEE---E
Confidence            22223355553   355  578998 55 777789999999 999989988888888641  2    222  2223   8


Q ss_pred             ccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeee
Q psy682          211 QRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRH  271 (330)
Q Consensus       211 gS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las  271 (330)
                      |+.|++||||+. +|+.+++|.+|.+  .|++|+|||+|+.||+|+ |+++++|.+.++.+..
T Consensus       373 ~~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~  433 (524)
T 2j04_B          373 SDGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG  433 (524)
T ss_dssp             ECSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred             eCCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc
Confidence            999999999975 7899999999999  999999999999999995 8899999988875554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=2.5e-25  Score=214.53  Aligned_cols=251  Identities=13%  Similarity=0.039  Sum_probs=169.4

Q ss_pred             ccCCCcEEEeeccccccccee--ecCCCceeEEEeCCCCCcCcceeeeecCcc-EEEEEeCCCCCeeEe-eeccc--eec
Q psy682            3 GGDKGIVEVWRTFNLALLYAF--PSCDSSVRSLALSHDQKYSPMMFSTVLDDV-CMSLKFPSNSPICHV-TANTY--VTL   76 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl--~gH~~~V~svafSpdg~~~~l~~~~~~~d~-~~~v~Fs~~~~v~~~-~~~~~--~~~   76 (330)
                      .+.|++|+|||..+|+.+..+  .+|...|++|+|||||++    +..+..|. |....... ++.+.. ..++.  ..+
T Consensus       121 vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~----lasgs~Dg~v~iWd~~~-~~~~~~~~~h~~~v~~~  195 (420)
T 4gga_A          121 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY----LAVGTSSAEVQLWDVQQ-QKRLRNMTSHSARVGSL  195 (420)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEE
T ss_pred             EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE----EEEEECCCeEEEEEcCC-CcEEEEEeCCCCceEEE
Confidence            346899999999999877766  478889999999999998    44433332 22222211 111111 00000  112


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC---ccc
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF---SQK  150 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~---~~~  150 (330)
                      ..++.++++++.++++++|+.....  ..++.+|..    .+..+.+++++. +++++.++...++....+...   ...
T Consensus       196 s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          196 SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             eeCCCEEEEEeCCCceeEeeecccceeeEEeccccc----ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence            2233456899999999999976443  344568864    667899999999 554333333323322211111   111


Q ss_pred             eeee---eeEEEEecCCCeEEE--eeccCCeEEEeeecccccccccccCCCCcE--EEe---HHHHHhhhccCCCcEEEE
Q psy682          151 LRVR---HNCFVTTVDSRFLLA--CGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS---ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       151 ~~~~---~~~~~~spDg~~i~a--sg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS---t~~lW~~SgS~Dgtvkl~  220 (330)
                      ...+   ..+++++|++..+++  +|+.|++||+ |++.+|++...+..|...+  ..+   ...+ ..+|+.||+|+||
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i-wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv-~~sg~~d~~I~iw  349 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI-WNVCSGACLSAVDAHSQVCSILWSPHYKELI-SGHGFAQNQLVIW  349 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE-EETTTTEEEEEEECSSCEEEEEEETTTTEEE-EEECTTTCCEEEE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEE-EeCCccccceeeccccceeeeeecCCCCeEE-EEEecCCCEEEEE
Confidence            1222   257889998877665  4678999999 9999999999998888765  112   1111 0156799999999


Q ss_pred             cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      +. +|+++++|.||.+  .|.+|+|||||++|||++ |+++++|.+..
T Consensus       350 d~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          350 KYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             ETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            75 7999999999999  999999999999999995 88999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=1.5e-25  Score=209.16  Aligned_cols=221  Identities=10%  Similarity=0.089  Sum_probs=169.1

Q ss_pred             cccceeecCCCceeEEEeCCCC-Cc-----------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQ-KY-----------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg-~~-----------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      .+..+|.||.+.|++|+|+|++ ++                       .++..+.+|...|..+.|+|++..+       
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l-------   80 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA-------   80 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE-------
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE-------
Confidence            4566899999999999999976 43                       0123356888899999999999875       


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL  151 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~  151 (330)
                                +|++.|++|++|+...+. +..+.+|.+    .+.++.|+||+. +++++.++  .+..|.+.+....++
T Consensus        81 ----------~s~s~D~~v~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~D~--~i~vwd~~~~~~~~~  144 (319)
T 3frx_A           81 ----------LSASWDKTLRLWDVATGETYQRFVGHKS----DVMSVDIDKKASMIISGSRDK--TIKVWTIKGQCLATL  144 (319)
T ss_dssp             ----------EEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSCEEEEEETTS--CEEEEETTSCEEEEE
T ss_pred             ----------EEEeCCCEEEEEECCCCCeeEEEccCCC----cEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEE
Confidence                      888999999999987655 455568974    677899999998 55544444  344555544333334


Q ss_pred             eeee---eEEEEecC------CCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHHHhhhccCCCc
Q psy682          152 RVRH---NCFVTTVD------SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLAWKNCQRDTSD  216 (330)
Q Consensus       152 ~~~~---~~~~~spD------g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgt  216 (330)
                      ..|.   .+++++|+      +.+ +++|+.|++||+ |++.++++...+.+|.+.|.  + +   ...+   +|+.||+
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~-l~s~~~d~~i~~-wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~---s~~~dg~  219 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVT-IISAGNDKMVKA-WNLNQFQIEADFIGHNSNINTLTASPDGTLIA---SAGKDGE  219 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCE-EEEEETTSCEEE-EETTTTEEEEEECCCCSCEEEEEECTTSSEEE---EEETTCE
T ss_pred             eccCCcEEEEEEccCCCCCCCccE-EEEEeCCCEEEE-EECCcchhheeecCCCCcEEEEEEcCCCCEEE---EEeCCCe
Confidence            4443   46778885      435 566678999999 99999999999999999882  1 2   3344   8999999


Q ss_pred             EEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682          217 VKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL  269 (330)
Q Consensus       217 vkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l  269 (330)
                      |+||+. +++.++++.++ +  .|.+++|||||+.|++++++.+..|+.+...+
T Consensus       220 i~iwd~~~~~~~~~~~~~-~--~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~  270 (319)
T 3frx_A          220 IMLWNLAAKKAMYTLSAQ-D--EVFSLAFSPNRYWLAAATATGIKVFSLDPQYL  270 (319)
T ss_dssp             EEEEETTTTEEEEEEECC-S--CEEEEEECSSSSEEEEEETTEEEEEEETTEEE
T ss_pred             EEEEECCCCcEEEEecCC-C--cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCee
Confidence            999976 78999999875 4  69999999999999999888888888876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=1.1e-25  Score=211.46  Aligned_cols=238  Identities=9%  Similarity=0.055  Sum_probs=177.3

Q ss_pred             ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      .+...+|.||.+.|++++|+|||++                  ..+...+.|...+..++|+|+++.+            
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l------------  112 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV------------  112 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEE------------
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEE------------
Confidence            3556789999999999999999987                  1223345777888889999998875            


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV  153 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~  153 (330)
                           ++++.|++|++|+.....     ...+.+|.+    .+.++.|++|+++++++.++...+|....+. ...++.+
T Consensus       113 -----~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~  182 (340)
T 1got_B          113 -----ACGGLDNICSIYNLKTREGNVRVSRELAGHTG----YLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTG  182 (340)
T ss_dssp             -----EEEETTCEEEEEETTTCSBSCEEEEEEECCSS----CEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred             -----EEEeCCCeEEEEECccCCCcceeEEEecCCCc----cEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcC
Confidence                 788889999999986542     234458874    5678999999998875555544444322221 1223443


Q ss_pred             ee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-c
Q psy682          154 RH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       154 ~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                      |.   .+++|+||+++ +++|+.|++||+ |++.+++..+++.+|.+.|.    .+  ...+   +||.||+|+||+. +
T Consensus       183 h~~~v~~~~~~~~~~~-l~sg~~d~~v~~-wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~---s~s~d~~v~iwd~~~  257 (340)
T 1got_B          183 HTGDVMSLSLAPDTRL-FVSGACDASAKL-WDVREGMCRQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLRA  257 (340)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCSEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEETTT
T ss_pred             CCCceEEEEECCCCCE-EEEEeCCCcEEE-EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE---EEcCCCcEEEEECCC
Confidence            43   58889999998 556678999999 99999999999999999882    22  3333   8999999999986 6


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc-cccccc
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~-~dVkEL  281 (330)
                      ++.+.++..+.....|.+|+|||+|++|++++ ++.+.+|.. +++.+..+..| +.|.++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  318 (340)
T 1got_B          258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence            78888876543223799999999999999995 888999975 67777777644 345444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.7e-26  Score=216.36  Aligned_cols=213  Identities=12%  Similarity=0.038  Sum_probs=159.8

Q ss_pred             CcccCCCcEEEeecccc--cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNL--ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g--~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.||+|++|++.++  +.+.++.+|...|++++|+|||++                                     
T Consensus        27 ~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-------------------------------------   69 (377)
T 3dwl_C           27 VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR-------------------------------------   69 (377)
T ss_dssp             ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCC-------------------------------------
T ss_pred             EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCE-------------------------------------
Confidence            57889999999999988  889999999999999999999887                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC--Cccce
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN--FSQKL  151 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~--~~~~~  151 (330)
                          +++++.|++|++|+.+...    .....+|.    ..+.++.|+||+. +++++.++...++....+..  ..+.+
T Consensus        70 ----l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  141 (377)
T 3dwl_C           70 ----IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN----RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL  141 (377)
T ss_dssp             ----EEEEETTSSEEEC------CCCCEEECCCCS----SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred             ----EEEEeCCCeEEEEEcCCCCceeeeeEecccC----CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence                4788889999999997665    45556786    4677899999998 66544444433332222221  12333


Q ss_pred             ee-e---eeEEEEecCCCeEEEeeccCCeEEEeeecc------------------cccccccccCCCCcEE--E-e---H
Q psy682          152 RV-R---HNCFVTTVDSRFLLACGFWDNSFREPFTTM------------------YLALQEGKFDHPNRLF--S-S---I  203 (330)
Q Consensus       152 ~~-~---~~~~~~spDg~~i~asg~~D~tirl~w~~~------------------~g~l~~~l~gH~d~Vi--a-S---t  203 (330)
                      .. |   ..+++|+||+++ +++|+.|++|++ |++.                  .++++..+ +|.+.|.  + +   .
T Consensus       142 ~~~h~~~v~~~~~~~~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          142 KRPLRSTILSLDWHPNNVL-LAAGCADRKAYV-LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             CSSCCSCEEEEEECTTSSE-EEEEESSSCEEE-EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             ecccCCCeEEEEEcCCCCE-EEEEeCCCEEEE-EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            33 3   368899999998 555668999999 9984                  46777777 9999882  1 2   3


Q ss_pred             HHHHhhhccCCCcEEEEcc-cCce----eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          204 SLAWKNCQRDTSDVKVHTT-FGDL----LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       204 ~~lW~~SgS~Dgtvkl~~~-~G~l----l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                      ..+   +|+.||+|+||+. +|+.    ++++.+|..  .|.+++|+|||++|++++++.++.|..+.
T Consensus       219 ~l~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          219 ALA---YAGHDSSVTIAYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPILLQGNE  281 (377)
T ss_dssp             CEE---EEETTTEEC-CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred             EEE---EEeCCCcEEEEECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence            333   8999999999976 5776    899999998  99999999999999999988888887763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=6.4e-26  Score=215.76  Aligned_cols=245  Identities=11%  Similarity=0.066  Sum_probs=158.7

Q ss_pred             cCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---Cc-------------------------ceeeeecCccEE
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---SP-------------------------MMFSTVLDDVCM   55 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---~~-------------------------l~~~~~~~d~~~   55 (330)
                      +.+...+.|++...    ...+|...|++|+|||||++   ..                         .....+|++.|.
T Consensus        23 ~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~   98 (357)
T 4g56_B           23 NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT   98 (357)
T ss_dssp             ---------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE
T ss_pred             CCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE
Confidence            33455677766432    23689999999999999998   00                         011236777888


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eec
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTH  129 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~  129 (330)
                      .++|+|++.+                  ++++.+++|++|+...+...     ...+|.    +.+.++.|+||++ +++
T Consensus        99 ~~~~s~d~~~------------------l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~----~~V~~v~~spdg~~l~s  156 (357)
T 4g56_B           99 DVAWVSEKGI------------------LVASDSGAVELWEILEKESLLVNKFAKYEHD----DIVKTLSVFSDGTQAVS  156 (357)
T ss_dssp             EEEEETTTEE------------------EEEETTSCEEEC--------CCCCEEECCCS----SCEEEEEECSSSSEEEE
T ss_pred             EEEEcCCCCE------------------EEEECCCEEEEeeccccceeEEEeeccCCCC----CCEEEEEECCCCCEEEE
Confidence            8999998875                  33456789999998654321     223776    4677899999999 665


Q ss_pred             cCCCCCCCcceeccCCCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE--EE-
Q psy682          130 PTSNNNAPVPKRHLGDNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL--FS-  201 (330)
Q Consensus       130 ~s~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V--ia-  201 (330)
                      ++.++...+|....+. ....+..|.   .+++|+|+++.++++++.|++||+ |++.+++....+.  .|...|  ++ 
T Consensus       157 gs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~-wd~~~~~~~~~~~~~~~~~~v~~v~~  234 (357)
T 4g56_B          157 GGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL-WDTRKPKPATRIDFCASDTIPTSVTW  234 (357)
T ss_dssp             EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE-CCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred             EeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE-EECCCCceeeeeeeccccccccchhh
Confidence            4444443333222111 222344443   588999999866777779999999 9999888766554  344444  21 


Q ss_pred             e----HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682          202 S----ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       202 S----t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~~~s~n-G~~las~~  273 (330)
                      +    .+.+   +|+.|++|+||+. +|++++++.+|.+  .|++|+|||+| ++||+++ ++++++|..+ |+.+..+.
T Consensus       235 sp~~~~~la---~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~  309 (357)
T 4g56_B          235 HPEKDDTFA---CGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS  309 (357)
T ss_dssp             CTTSTTEEE---EEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC
T ss_pred             hhcccceEE---EeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC
Confidence            1    3333   8999999999975 7999999999999  99999999998 5788885 7899999876 55555555


Q ss_pred             Cccccccc
Q psy682          274 HNDNLQEL  281 (330)
Q Consensus       274 ~~~dVkEL  281 (330)
                      +.+.|..+
T Consensus       310 H~~~V~~v  317 (357)
T 4g56_B          310 HRDFVTGV  317 (357)
T ss_dssp             CSSCEEEE
T ss_pred             CCCCEEEE
Confidence            55666665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=1.4e-25  Score=230.19  Aligned_cols=237  Identities=13%  Similarity=0.101  Sum_probs=173.4

Q ss_pred             CcccCCCcEEEeecccc-----cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNL-----ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g-----~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v   57 (330)
                      ||||.||+||||++.++     ....++.+|...|++|+|||||++                  .....+.+|.+.|.++
T Consensus       399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~  478 (694)
T 3dm0_A          399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV  478 (694)
T ss_dssp             EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence            58999999999998753     345679999999999999999987                  1223356899999999


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC----CCCCCCCCCCCCCccccCCCc---eecc
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS----PSYAETPGSPPGNLPLTLDPI---LTHP  130 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~----~~h~~~~~~~~~~l~fs~D~~---l~~~  130 (330)
                      .|+|++..+                 +|++.|++|++|+..+......    .+|.    +.+.++.|+||+.   ++++
T Consensus       479 ~~s~~~~~l-----------------~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~  537 (694)
T 3dm0_A          479 AFSLDNRQI-----------------VSASRDRTIKLWNTLGECKYTISEGGEGHR----DWVSCVRFSPNTLQPTIVSA  537 (694)
T ss_dssp             EECTTSSCE-----------------EEEETTSCEEEECTTSCEEEEECSSTTSCS----SCEEEEEECSCSSSCEEEEE
T ss_pred             EEeCCCCEE-----------------EEEeCCCEEEEEECCCCcceeeccCCCCCC----CcEEEEEEeCCCCcceEEEE
Confidence            999999975                 8888999999999865432222    3565    4678899999973   5654


Q ss_pred             CCCCCCCcceeccCC-CCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe-
Q psy682          131 TSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS-  202 (330)
Q Consensus       131 s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS-  202 (330)
                      +.++.  +..|.+.. ....++..|.   .+++|+|||++ +++|+.|++||+ |++.+++.+..+..+....   +.+ 
T Consensus       538 s~d~~--v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~i-wd~~~~~~~~~~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          538 SWDKT--VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVLL-WDLAEGKKLYSLEANSVIHALCFSPN  613 (694)
T ss_dssp             ETTSC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCEE-EETTTTEEEECCBCSSCEEEEEECSS
T ss_pred             eCCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEE-EECCCCceEEEecCCCcEEEEEEcCC
Confidence            44444  44444422 2223344443   58899999998 555668999999 9999999888877665422   111 


Q ss_pred             HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC-----------------CCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          203 ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF-----------------ASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~-----------------~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      ...+   +++.|+.|+||+. ++++++++..+...                 ..+.+++|||||+.|++++ ++.+++|.
T Consensus       614 ~~~l---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          614 RYWL---CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             SSEE---EEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CcEE---EEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence            1112   5667888999976 68888888754220                 1367899999999999995 88999998


Q ss_pred             eC
Q psy682          264 MN  265 (330)
Q Consensus       264 ~n  265 (330)
                      +.
T Consensus       691 i~  692 (694)
T 3dm0_A          691 IG  692 (694)
T ss_dssp             C-
T ss_pred             cc
Confidence            64

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-24  Score=205.46  Aligned_cols=235  Identities=13%  Similarity=0.083  Sum_probs=175.3

Q ss_pred             cCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCc----------------C------cceeeeecCccEEEEE
Q psy682            4 GDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKY----------------S------PMMFSTVLDDVCMSLK   58 (330)
Q Consensus         4 s~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~----------------~------~l~~~~~~~d~~~~v~   58 (330)
                      +.|++|++|++.+++   .+..+ .|...|.+++|+|||++                .      .+....+|...|..++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            899999999998875   44444 69999999999999988                1      1222346777788888


Q ss_pred             eCCC-CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC------c----ccCCCCCCCCCCCCCCccccCC-Cc
Q psy682           59 FPSN-SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------S----IQSPSYAETPGSPPGNLPLTLD-PI  126 (330)
Q Consensus        59 Fs~~-~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~------~----~~~~~h~~~~~~~~~~l~fs~D-~~  126 (330)
                      |+|+ +.+                 +++++.|++|++|+.....      .    ....+|.    ..+.++.|+|| +.
T Consensus       121 ~~~~~~~~-----------------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~  179 (416)
T 2pm9_A          121 FNAKQDNV-----------------LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV----DEVISLAWNQSLAH  179 (416)
T ss_dssp             ECSSSTTB-----------------EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS----CCCCEEEECSSCTT
T ss_pred             EcCCCCCE-----------------EEEEcCCCeEEEEECCCCccccccccccccccccCCC----CCeeEEEeCCCCCc
Confidence            8887 665                 4888899999999997654      1    1224565    46788999999 55


Q ss_pred             -eeccCCCCCCCcceeccCCC-Ccccee---------eeeeEEEEecCCCeEEEeeccCC---eEEEeeecccc-ccccc
Q psy682          127 -LTHPTSNNNAPVPKRHLGDN-FSQKLR---------VRHNCFVTTVDSRFLLACGFWDN---SFREPFTTMYL-ALQEG  191 (330)
Q Consensus       127 -l~~~s~~~~~~~~~~~l~~~-~~~~~~---------~~~~~~~~spDg~~i~asg~~D~---tirl~w~~~~g-~l~~~  191 (330)
                       +++++.++.  +..+.+... ....+.         ....+++|+||++.++++++.|+   +|++ |++.++ +.+..
T Consensus       180 ~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~-~d~~~~~~~~~~  256 (416)
T 2pm9_A          180 VFASAGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI-WDLRNANTPLQT  256 (416)
T ss_dssp             EEEEESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE-EETTSTTSCSBC
T ss_pred             EEEEEcCCCC--EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE-EeCCCCCCCcEE
Confidence             555344443  334443221 111222         22368899999865577777898   9999 999886 67888


Q ss_pred             cc-CCCCcEE----Ee---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc-cEEEEcc-CCeEE
Q psy682          192 KF-DHPNRLF----SS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNYE-RGHIA  260 (330)
Q Consensus       192 l~-gH~d~Vi----aS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG-~~l~s~~-~~~~~  260 (330)
                      +. +|...|.    .+   ...+   +|+.||+|+||+. +|+.++++.+|.+  .|.+++|+||| ++|++++ ++.++
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~---s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLL---SSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEE---EEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             eecCccCceeEEEeCCCCCCeEE---EEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecCCcEE
Confidence            88 9998882    21   3333   8999999999975 7999999999998  99999999999 8999985 88999


Q ss_pred             EEeeCCce
Q psy682          261 AFTMNGNR  268 (330)
Q Consensus       261 ~~s~nG~~  268 (330)
                      +|.++...
T Consensus       332 iw~~~~~~  339 (416)
T 2pm9_A          332 VQTLQNLT  339 (416)
T ss_dssp             EEESCCCC
T ss_pred             EEEccCCC
Confidence            99987543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-25  Score=227.36  Aligned_cols=240  Identities=11%  Similarity=0.049  Sum_probs=157.2

Q ss_pred             CcccCCCcEEEeecccccc-----------cceeecCCCceeEEEeCCCCCc------------------CcceeeeecC
Q psy682            1 MSGGDKGIVEVWRTFNLAL-----------LYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLD   51 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~-----------l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~   51 (330)
                      |||+.||+||||++.+++.           ..++.+|...|++++|+|++.+                  .+...+.+|+
T Consensus       229 As~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~  308 (524)
T 2j04_B          229 SFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD  308 (524)
T ss_dssp             EEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSS
T ss_pred             EEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeeccc
Confidence            5789999999999987642           3478999999999999997655                  1233466888


Q ss_pred             ccEEEE--EeCCCC-CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-
Q psy682           52 DVCMSL--KFPSNS-PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        52 d~~~~v--~Fs~~~-~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      +.|.+|  .|+|++ .+                 +||++.|++||+|+..... +.+..+|...  ..+.++.|+||++ 
T Consensus       309 ~~V~sv~~~~s~~g~~~-----------------laS~S~D~tvklWD~~~~~~~~~~~~~~~~--~~v~~v~fsp~~~~  369 (524)
T 2j04_B          309 SYILSVSTAYSDFEDTV-----------------VSTVAVDGYFYIFNPKDIATTKTTVSRFRG--SNLVPVVYCPQIYS  369 (524)
T ss_dssp             SCEEEEEEECCTTSCCE-----------------EEEEETTSEEEEECGGGHHHHCEEEEECSC--CSCCCEEEETTTTE
T ss_pred             ccEEEEEEEcCCCCCeE-----------------EEEeccCCeEEEEECCCCCccccccccccc--CcccceEeCCCcCe
Confidence            888888  678887 65                 4899999999999986433 2333456421  1367899999998 


Q ss_pred             eeccCCCCCCCcceeccCCCC-ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEe
Q psy682          127 LTHPTSNNNAPVPKRHLGDNF-SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS  202 (330)
Q Consensus       127 l~~~s~~~~~~~~~~~l~~~~-~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS  202 (330)
                      +++++.  +..+..|.+.... ..++.+|.   .+++|||||++ +++|+.|++||+ |+.. +++++++.++...  ..
T Consensus       370 l~s~~~--d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~l-wd~~-~~~~~~~~~~~~~--~~  442 (524)
T 2j04_B          370 YIYSDG--ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLII-TNAA-RRLLHGIKNSSAT--QK  442 (524)
T ss_dssp             EEEECS--SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEEC-CBSC-SSTTTCC--------CC
T ss_pred             EEEeCC--CCcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEE-Eech-HhhccccccCccc--ee
Confidence            554333  3334444443221 23455554   68999999998 556778999999 9996 4555443322110  01


Q ss_pred             HHHHHhhhccCCCc-EEEEc--------ccCceeeecCCCCCCCCCcEEEeCCCc---cEEEEcc-CCeEEEEeeCCce
Q psy682          203 ISLAWKNCQRDTSD-VKVHT--------TFGDLLRSLDPPSGFASPESVVMSREG---VIVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       203 t~~lW~~SgS~Dgt-vkl~~--------~~G~ll~tL~~h~~~~~v~~v~fS~dG---~~l~s~~-~~~~~~~s~nG~~  268 (330)
                      +..+|.+.-|.||. +++|.        .+|+++.+|.+|.+  .|++|+|||+|   ++||+|+ ++.+++|.++|.+
T Consensus       443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~--~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI--NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH  519 (524)
T ss_dssp             CCEEEECBCCSSSCEEEECCCCCCCC-------------CCC--SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred             eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc--eEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence            12334444555543 44443        36999999999999  99999999995   4999996 6999999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=2.1e-25  Score=214.53  Aligned_cols=228  Identities=11%  Similarity=0.008  Sum_probs=142.0

Q ss_pred             CcccCCCcEEEeeccccc-----ccceeecCCCceeEEEeCC--------CCCc------------------Ccceeeee
Q psy682            1 MSGGDKGIVEVWRTFNLA-----LLYAFPSCDSSVRSLALSH--------DQKY------------------SPMMFSTV   49 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~-----~l~tl~gH~~~V~svafSp--------dg~~------------------~~l~~~~~   49 (330)
                      |+|+.|++||||++.+++     .+.++.||.++|++|+|+|        ||++                  .+.....+
T Consensus       105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~  184 (393)
T 4gq1_A          105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP  184 (393)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC
Confidence            589999999999998774     3456899999999999998        7776                  12222346


Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCcee
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILT  128 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~  128 (330)
                      |...+++++|+|+++-                .+++++.|++|++|+...+..... .++..    ......+++++...
T Consensus       185 ~~~~v~~v~~~p~~~~----------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~----~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          185 LSSPGISVQFRPSNPN----------------QLIVGERNGNIRIFDWTLNLSAEENSQTEL----VKNPWLLTLNTLPL  244 (393)
T ss_dssp             CSSCEEEEEEETTEEE----------------EEEEEETTSEEEEEETTCCC--------------CSCCCSEEEESGGG
T ss_pred             CCCCcEEEEECCCCCc----------------eEEecCCCCEEEEEECCCCcccccccccCC----cccceEEecccccc
Confidence            6667777888877653                358899999999999865543222 22321    11122222222211


Q ss_pred             ccCCCCCCCcceeccCCCCccceeeeeeEEEEe-cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE-------
Q psy682          129 HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-------  200 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-------  200 (330)
                      .         ......++.     ....+++++ |||+.| ++++.|+++++ |++.+++....+.+|...+-       
T Consensus       245 ~---------~~~~~~~~~-----~~v~~v~~~~~dg~~l-~s~s~d~~i~v-wd~~~~~~~~~l~~~~~~~~~~~~~~~  308 (393)
T 4gq1_A          245 V---------NTCHSSGIA-----SSLANVRWIGSDGSGI-LAMCKSGAWLR-WNLFANNDYNEISDSTMKLGPKNLLPN  308 (393)
T ss_dssp             C---------------CCS-----SSCSEEEEETTTTCEE-EEECTTSEEEE-EEC-------------------CCSCS
T ss_pred             e---------eeeeccccc-----ccceeeeeecCCCCEE-EEEeCCCCEEE-EECccCCCCceEeeecCccccEEEccc
Confidence            0         000000110     112466665 899985 55668999999 99998988888888876650       


Q ss_pred             ----Ee-----H-------HHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682          201 ----SS-----I-------SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       201 ----aS-----t-------~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                          ..     .       -..+-.+||.||+|+||+. +|+.+.++.+|..  +|++|+|||||+.||+++++.+.+|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                00     0       0011128999999999975 7999999999988  99999999999999999999898887


Q ss_pred             eCC
Q psy682          264 MNG  266 (330)
Q Consensus       264 ~nG  266 (330)
                      ..|
T Consensus       387 L~g  389 (393)
T 4gq1_A          387 LMG  389 (393)
T ss_dssp             EGG
T ss_pred             EeC
Confidence            665

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=8.1e-25  Score=208.90  Aligned_cols=238  Identities=10%  Similarity=0.054  Sum_probs=171.5

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEe
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHV   68 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~   68 (330)
                      .++..|+..+.....+|.||.+.|++|+|||||++                  ..+....+|...|+.++|+|+++.+  
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l--  123 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV--  123 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE--
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE--
Confidence            45567888788888999999999999999999987                  1122345677777788888888864  


Q ss_pred             eeccceeccCCcEEEEEcCCcceEEEeCCCCC--------CcccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCc
Q psy682           69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYA--------ASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPV  138 (330)
Q Consensus        69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--------~~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~  138 (330)
                                     |+++.|++|++|+....        ....+.||.+    .+.++.|.|+..  +++++.++..  
T Consensus       124 ---------------as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~----~v~~~~~~~~~~~~l~s~s~D~~i--  182 (380)
T 3iz6_a          124 ---------------ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG----YASSCQYVPDQETRLITGSGDQTC--  182 (380)
T ss_dssp             ---------------EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS----CCCCCBCCSSSSSCEEEECTTSCE--
T ss_pred             ---------------EEeeCCCcEEEEECCCCccccCCccceeeccCCCc----ceEEEEEecCCCCEEEEECCCCcE--
Confidence                           89999999999997532        2344568874    566789999753  6664444444  


Q ss_pred             ceeccCCCC-ccce-----eee---eeEEEEec-CCCeEEEeeccCCeEEEeeecc-cccccccccCCCCcE--E--Ee-
Q psy682          139 PKRHLGDNF-SQKL-----RVR---HNCFVTTV-DSRFLLACGFWDNSFREPFTTM-YLALQEGKFDHPNRL--F--SS-  202 (330)
Q Consensus       139 ~~~~l~~~~-~~~~-----~~~---~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~-~g~l~~~l~gH~d~V--i--aS-  202 (330)
                      ..|.+...- ...+     .+|   ..++++++ ++++ +++|+.|++||+ |++. .++.++.+.+|.+.|  +  .+ 
T Consensus       183 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~sgs~D~~v~~-wd~~~~~~~~~~~~~h~~~v~~v~~~p~  260 (380)
T 3iz6_a          183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM-FISGSCDTTVRL-WDLRITSRAVRTYHGHEGDINSVKFFPD  260 (380)
T ss_dssp             EEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE-EEEEETTSCEEE-EETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred             EEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE-EEEEECCCeEEE-EECCCCCcceEEECCcCCCeEEEEEecC
Confidence            344432110 0001     122   24667766 7777 666778999999 9986 467888999999987  2  22 


Q ss_pred             -HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC-----CCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceeeec
Q psy682          203 -ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF-----ASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLRHE  272 (330)
Q Consensus       203 -t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~-----~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~las~  272 (330)
                       ...+   +||.||+|+||+. +|+.++++..+...     ..|.+++|||+|++|++| +++.+++|.. .|+.+..+
T Consensus       261 ~~~l~---s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          261 GQRFG---TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             SSEEE---EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCeEE---EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence             3333   8999999999975 78999988775431     248999999999999999 4888999975 45555444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.2e-25  Score=206.43  Aligned_cols=245  Identities=13%  Similarity=0.060  Sum_probs=175.3

Q ss_pred             CcccCCCcEEEeec----cccc------ccceeec----------CCCceeEEEeCCCCCc-----------------Cc
Q psy682            1 MSGGDKGIVEVWRT----FNLA------LLYAFPS----------CDSSVRSLALSHDQKY-----------------SP   43 (330)
Q Consensus         1 asgs~d~~V~lW~~----~~g~------~l~tl~g----------H~~~V~svafSpdg~~-----------------~~   43 (330)
                      |+|+.||+|++|++    .+|+      ....+..          |.+.|.+++|+|||++                 ..
T Consensus        62 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  141 (425)
T 1r5m_A           62 AYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGAL  141 (425)
T ss_dssp             EEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred             EEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence            57889999999999    8888      4555555          7999999999999987                 11


Q ss_pred             ceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCC----------
Q psy682           44 MMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETP----------  112 (330)
Q Consensus        44 l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~----------  112 (330)
                      +....+|...+..+.|+|+++.+                 ++++.+++|++|+..... +.....|....          
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l-----------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (425)
T 1r5m_A          142 LNVLNFHRAPIVSVKWNKDGTHI-----------------ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG  204 (425)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEE-----------------EEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred             eeeccCCCccEEEEEECCCCCEE-----------------EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence            22344677888888888888864                 677788999999996554 33333443210          


Q ss_pred             -CCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682          113 -GSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA  187 (330)
Q Consensus       113 -~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~  187 (330)
                       ...+.++.|++|+.+++++.++..  ..+.+.. .....+..+   ..+++++||+++| ++++.|++|++ |++.+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~g~i--~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~  280 (425)
T 1r5m_A          205 DGSLGVDVEWVDDDKFVIPGPKGAI--FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL-LSASDDGTLRI-WHGGNGN  280 (425)
T ss_dssp             -CCCBSCCEEEETTEEEEECGGGCE--EEEETTCSSCSEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEE-ECSSSBS
T ss_pred             CcceeeEEEEcCCCEEEEEcCCCeE--EEEEcCCCceeeeeccCCCceEEEEECCCCCEE-EEEcCCCEEEE-EECCCCc
Confidence             001778999999998765544433  3333322 111223223   2578899999984 55568999999 9999999


Q ss_pred             ccccccCCCCcE----------EEe-----HHHHHhh-----------------------------hccCCCcEEEEcc-
Q psy682          188 LQEGKFDHPNRL----------FSS-----ISLAWKN-----------------------------CQRDTSDVKVHTT-  222 (330)
Q Consensus       188 l~~~l~gH~d~V----------iaS-----t~~lW~~-----------------------------SgS~Dgtvkl~~~-  222 (330)
                      ....+.+|...|          +++     ++++|+.                             +|+.||+|++|+. 
T Consensus       281 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            999999998877          222     6777776                             8889999999976 


Q ss_pred             cCc--------------------eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          223 FGD--------------------LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       223 ~G~--------------------ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                      +++                    +++++.+|.....|.+++|+|||+.||++ .++.+++|.++|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             HHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             CCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence            567                    89999998552279999999999999888 488899999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.9e-25  Score=200.62  Aligned_cols=233  Identities=12%  Similarity=0.105  Sum_probs=173.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc---------------------CcceeeeecCccEEEEEe
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY---------------------SPMMFSTVLDDVCMSLKF   59 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~---------------------~~l~~~~~~~d~~~~v~F   59 (330)
                      |+|+.||+|++|++.+++....+.+|...|.+++|+|++++                     .++....+|...+..+.|
T Consensus        33 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (313)
T 3odt_A           33 ASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF  112 (313)
T ss_dssp             EEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred             EEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence            57899999999999999999999999999999999999987                     011122344444555555


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCC
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAP  137 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~  137 (330)
                        ++.                 .+++++.+++|++|+ .+.......+|.    ..+.++.+.+ |+. +++++.++.  
T Consensus       113 --~~~-----------------~l~~~~~d~~i~~~d-~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d~~--  166 (313)
T 3odt_A          113 --QDG-----------------VVISGSWDKTAKVWK-EGSLVYNLQAHN----ASVWDAKVVSFSENKFLTASADKT--  166 (313)
T ss_dssp             --ETT-----------------EEEEEETTSEEEEEE-TTEEEEEEECCS----SCEEEEEEEETTTTEEEEEETTSC--
T ss_pred             --cCC-----------------EEEEEeCCCCEEEEc-CCcEEEecccCC----CceeEEEEccCCCCEEEEEECCCC--
Confidence              233                 347888899999999 455555556776    3566788887 777 555344333  


Q ss_pred             cceeccCCCCccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e--HHHHHh
Q psy682          138 VPKRHLGDNFSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S--ISLAWK  208 (330)
Q Consensus       138 ~~~~~l~~~~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S--t~~lW~  208 (330)
                      +..+..... ...+..    ...+++++|+++  +++|+.|++|++ |++.+++++..+.+|...|.  + +  -..+  
T Consensus       167 i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~--  240 (313)
T 3odt_A          167 IKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKL-VDMHTGDVLRTYEGHESFVYCIKLLPNGDIV--  240 (313)
T ss_dssp             EEEEETTEE-EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEE-EETTTCCEEEEEECCSSCEEEEEECTTSCEE--
T ss_pred             EEEEecCce-EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEE-EECCchhhhhhhhcCCceEEEEEEecCCCEE--
Confidence            334443221 122222    235888999998  445568999999 99999999999999999882  1 2  2222  


Q ss_pred             hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCce
Q psy682          209 NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR  268 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~  268 (330)
                       +|+.||+|++|+. +|++++++.+|.+  .|.+++|+|||++++.+.++.++.|.++...
T Consensus       241 -~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          241 -SCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             -EEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred             -EEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence             8999999999975 8999999999988  9999999999998887789999999977543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1e-25  Score=230.77  Aligned_cols=235  Identities=7%  Similarity=-0.104  Sum_probs=168.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcc--------eeee-ecCccEEEEEeCCCCCeeEeeec
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPM--------MFST-VLDDVCMSLKFPSNSPICHVTAN   71 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l--------~~~~-~~~d~~~~v~Fs~~~~v~~~~~~   71 (330)
                      ||||.|+|||  +   ++...+++||...|++|+|||||..+..        ..++ .+++.|+.++|||||+.+     
T Consensus        31 ASas~D~TV~--d---~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~L-----  100 (588)
T 2j04_A           31 LTTFPDISIG--Q---PKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWM-----  100 (588)
T ss_dssp             EECSSSEEEE--E---ECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCE-----
T ss_pred             EEEcCCceee--c---ccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEE-----
Confidence            6899999999  4   6666778999999999999999966111        1122 558899999999999986     


Q ss_pred             cceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCC-CCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC--
Q psy682           72 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAET-PGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF--  147 (330)
Q Consensus        72 ~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~-~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~--  147 (330)
                                  |+++.+++|++|+.++ .+.+.. |... ....+.+++|||||+ +++++.++...+|  .+.+..  
T Consensus       101 ------------As~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW--d~~~~~l~  164 (588)
T 2j04_A          101 ------------AVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF--SIRKNSEN  164 (588)
T ss_dssp             ------------EEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE--ECCCCTTT
T ss_pred             ------------EEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE--ECCCCccc
Confidence                        7888899999999755 344434 4421 112467899999999 6664555544444  433221  


Q ss_pred             ------ccce----e---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc---ccc-cCCCCcE----EEeHHHH
Q psy682          148 ------SQKL----R---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ---EGK-FDHPNRL----FSSISLA  206 (330)
Q Consensus       148 ------~~~~----~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~---~~l-~gH~d~V----iaSt~~l  206 (330)
                            .+++    .   ....+++|+|||  +++++ .|+++|+ |+++++++.   +++ .+|.+.|    +.....+
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrl-Wd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LA  240 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFS-MTVSASSHQPVSRMIQNASRRKITDLKIVDYKVV  240 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEE-ECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEE
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEE-EECCCCccccceeeecccccCcEEEEEEECCEEE
Confidence                  1223    1   134689999999  45554 6999999 999866632   356 4888777    2223333


Q ss_pred             HhhhccCCCcEEEEcccCceeeecC-CCCCCCCCcEEEe--CCCccEEEEcc-CCeEEE-------EeeCCceeeec
Q psy682          207 WKNCQRDTSDVKVHTTFGDLLRSLD-PPSGFASPESVVM--SREGVIVVNYE-RGHIAA-------FTMNGNRLRHE  272 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~~G~ll~tL~-~h~~~~~v~~v~f--S~dG~~l~s~~-~~~~~~-------~s~nG~~las~  272 (330)
                         +++ ||+|+||+..|+.+.++. ||.+  .|+.|+|  ||||+.|++++ +|. ++       |++||..+++.
T Consensus       241 ---Sa~-~~tIkLWd~~~~~~~~~~~gh~~--~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~  310 (588)
T 2j04_A          241 ---LTC-PGYVHKIDLKNYSISSLKTGSLE--NFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL  310 (588)
T ss_dssp             ---EEC-SSEEEEEETTTTEEEEEECSCCS--CCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred             ---EEe-CCeEEEEECCCCeEEEEEcCCCc--eEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence               676 799999998777665544 8988  9999999  99999999996 555 33       46777777665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=7.6e-25  Score=211.54  Aligned_cols=238  Identities=11%  Similarity=0.068  Sum_probs=171.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeC--C
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFP--S   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs--~   61 (330)
                      |+|+.||+|++|++.+++.+.++.+|.+.|++++|+|++.+                 ..+..+.+|.+.|..+.|+  +
T Consensus       136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC
Confidence            57999999999999999999999999999999999999844                 1122233566666666665  3


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc------------------------ccCCCCCCCCCCCCC
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS------------------------IQSPSYAETPGSPPG  117 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~------------------------~~~~~h~~~~~~~~~  117 (330)
                      +++.                 +++++.|++|++|+......                        ....+|..    .+ 
T Consensus       216 ~~~~-----------------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v-  273 (464)
T 3v7d_B          216 NIKY-----------------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA----SV-  273 (464)
T ss_dssp             SCEE-----------------EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS----CE-
T ss_pred             CCCE-----------------EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc----eE-
Confidence            4444                 58888999999999876542                        23345543    22 


Q ss_pred             CccccCCCc-eeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          118 NLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       118 ~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                       ..+++|+. +++++.++.  +..+.+.. .....+..+   ..+++++||+++ +++|+.|++|++ |++.+|+++..+
T Consensus       274 -~~~~~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~v-wd~~~~~~~~~~  348 (464)
T 3v7d_B          274 -RTVSGHGNIVVSGSYDNT--LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRI-WDLENGELMYTL  348 (464)
T ss_dssp             -EEEEEETTEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEE-EETTTTEEEEEE
T ss_pred             -EEEcCCCCEEEEEeCCCe--EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEE-EECCCCcEEEEE
Confidence             23467777 555444443  33343321 111223333   257889999999 455668999999 999999999999


Q ss_pred             cCCCCcEE--E-e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CC
Q psy682          193 FDHPNRLF--S-S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NG  266 (330)
Q Consensus       193 ~gH~d~Vi--a-S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG  266 (330)
                      .+|...|.  + + ...+   +|+.||+|++|+. +++....+. |..  .+..++|+|+|++|++++++.+.+|.. +|
T Consensus       349 ~~h~~~v~~~~~~~~~l~---s~s~dg~v~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          349 QGHTALVGLLRLSDKFLV---SAAADGSIRGWDANDYSRKFSYH-HTN--LSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             CCCSSCEEEEEECSSEEE---EEETTSEEEEEETTTCCEEEEEE-CTT--CCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             eCCCCcEEEEEEcCCEEE---EEeCCCcEEEEECCCCceeeeec-CCC--CccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            99999882  2 2 3333   8999999999986 455555543 444  788999999999999999999999985 57


Q ss_pred             ceeee
Q psy682          267 NRLRH  271 (330)
Q Consensus       267 ~~las  271 (330)
                      +.+..
T Consensus       423 ~~~~~  427 (464)
T 3v7d_B          423 KLVHA  427 (464)
T ss_dssp             CEEES
T ss_pred             cEEeh
Confidence            77765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=204.25  Aligned_cols=220  Identities=11%  Similarity=0.088  Sum_probs=164.1

Q ss_pred             ccccceeecCCC-ceeEEEeCCCCCc-------Ccc--------------eeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682           17 LALLYAFPSCDS-SVRSLALSHDQKY-------SPM--------------MFSTVLDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus        17 g~~l~tl~gH~~-~V~svafSpdg~~-------~~l--------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      .+++.+|++|.. .|++++|||||++       ..+              ....+|.+.|..++|+|+++.+        
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l--------   76 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL--------   76 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE--------
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE--------
Confidence            457788999998 9999999999998       000              1124788899999999999975        


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC--C-
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN--F-  147 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~--~-  147 (330)
                               |+++.|++|++|+.+...   +.++.+|.    ..+.++.|+||+. +++++.++.  +..|.+...  . 
T Consensus        77 ---------~s~s~D~~v~iw~~~~~~~~~~~~~~~h~----~~v~~v~~sp~~~~l~s~s~D~~--v~iwd~~~~~~~~  141 (345)
T 3fm0_A           77 ---------ASASFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSGNLLATCSRDKS--VWVWEVDEEDEYE  141 (345)
T ss_dssp             ---------EEEETTSCEEEEEECCC-EEEEEEECCCS----SCEEEEEECTTSSEEEEEETTSC--EEEEEECTTSCEE
T ss_pred             ---------EEEECCCcEEEEEccCCCeEEEEEccCCC----CCceEEEEeCCCCEEEEEECCCe--EEEEECCCCCCeE
Confidence                     888899999999986553   45667897    4677899999999 665444443  444444221  1 


Q ss_pred             -ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee--HHHHHhhhccCCC
Q psy682          148 -SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS--ISLAWKNCQRDTS  215 (330)
Q Consensus       148 -~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dg  215 (330)
                       ...+..|   ..+++|+||+++ +++|+.|++||+ |+.++++  ...++.+|.+.|.    ..  ...+   |||.||
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~-w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~---s~s~D~  216 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKL-YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA---SCSDDR  216 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEE-EEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE---EEETTS
T ss_pred             EEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEE-EEecCCCEEEEEEecCCCCceEEEEECCCCCEEE---EEeCCC
Confidence             1122233   257889999998 556678999999 9998765  4578899999882    22  3334   899999


Q ss_pred             cEEEEcc----------------cCceeeecCC-CCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          216 DVKVHTT----------------FGDLLRSLDP-PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       216 tvkl~~~----------------~G~ll~tL~~-h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                      +|+||+.                .++.+.++.+ |..  .|++|+|+|+|..||++ +++.+++|..+.
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            9999974                1245667777 666  89999999999999998 488899998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=1.1e-24  Score=235.44  Aligned_cols=260  Identities=13%  Similarity=0.103  Sum_probs=201.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceee--------------------------
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFS--------------------------   47 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~--------------------------   47 (330)
                      |+|+.||+|++|++.+++.+..+.+|...|++++|+|||+.       ..+...                          
T Consensus       856 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  935 (1249)
T 3sfz_A          856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET  935 (1249)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCc
Confidence            46889999999999999999999999999999999999986       111110                          


Q ss_pred             ----------------------eecCccEEEEEeCCCCCeeEeeeccc-------------------------eeccCCc
Q psy682           48 ----------------------TVLDDVCMSLKFPSNSPICHVTANTY-------------------------VTLHMPS   80 (330)
Q Consensus        48 ----------------------~~~~d~~~~v~Fs~~~~v~~~~~~~~-------------------------~~~~~~~   80 (330)
                                            ..+...+..+.|+|+++.++++....                         +.+++++
T Consensus       936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A          936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp             EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS
T ss_pred             EEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC
Confidence                                  01234578899999999998875432                         3567788


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeee---eE
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH---NC  157 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~---~~  157 (330)
                      ..+++++.|++|++|+...+......+|.+    .+.++.|++|+.+++++.++...+|....+. ....+..+.   .+
T Consensus      1016 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A         1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFTCHQGTVLS 1090 (1249)
T ss_dssp             SCEEEECSSSBEEEEETTTTEEECCBCCSS----CEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEECCSSCCCC
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEecCCC----cEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEcccCCcEEE
Confidence            888999999999999998887777778874    6778999999998875555544443333222 223344443   57


Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeec
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSL  230 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL  230 (330)
                      ++|+|||++ +++|+.|++|++ |++.+++.+..+.+|.+.|.    .+  ...+   +|+.||+|+||+. +|+.++++
T Consensus      1091 ~~~s~d~~~-l~s~s~d~~v~i-wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la---t~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1091 CAISSDATK-FSSTSADKTAKI-WSFDLLSPLHELKGHNGCVRCSAFSLDGILLA---TGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp             EEECSSSSS-CEEECCSSCCCE-ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE---EEETTSCCCEEESSSSCCCCCC
T ss_pred             EEECCCCCE-EEEEcCCCcEEE-EECCCcceeeeeccCCCcEEEEEECCCCCEEE---EEeCCCEEEEEECCCCceEEEe
Confidence            889999999 555668999999 99999999999999999882    22  3344   8999999999976 69998887


Q ss_pred             ---------CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeecc
Q psy682          231 ---------DPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       231 ---------~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~  273 (330)
                               .+|.+  .|.+++|||||+.||+++ +.+.+|.+ +|+.+....
T Consensus      1166 ~~~~~~~~~~~~~~--~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A         1166 APISVEEGTATHGG--WVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp             CCCC-------CCS--CCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC
T ss_pred             ccccccccccccCc--eEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee
Confidence                     56777  899999999999999997 89999984 466666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=5.2e-24  Score=195.91  Aligned_cols=238  Identities=10%  Similarity=0.073  Sum_probs=168.3

Q ss_pred             cccC---CCcEEEeeccccccccee-ecCCCceeEEEeCCC---CCc------------------C-cceeeeecCccEE
Q psy682            2 SGGD---KGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHD---QKY------------------S-PMMFSTVLDDVCM   55 (330)
Q Consensus         2 sgs~---d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpd---g~~------------------~-~l~~~~~~~d~~~   55 (330)
                      +|+.   ||+|++|++.+++..... .+|...|.+++|+|+   |++                  . ++....+|.+.+.
T Consensus        36 ~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  115 (357)
T 3i2n_A           36 MGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN  115 (357)
T ss_dssp             EEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE
T ss_pred             ecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE
Confidence            4555   999999999988765443 489999999999999   465                  1 3344556777777


Q ss_pred             EE------EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCcc----ccC
Q psy682           56 SL------KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLP----LTL  123 (330)
Q Consensus        56 ~v------~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l~----fs~  123 (330)
                      .+      +|+|+++.                 +++++.+++|++|+.....  ......|.+.....+.++.    |++
T Consensus       116 ~~~~~~~~~~s~~~~~-----------------l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A          116 AIDGIGGLGIGEGAPE-----------------IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             EEEEESGGGCC-CCCE-----------------EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             EEeeccccccCCCccE-----------------EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            77      34566665                 4888889999999997654  4444455443334555666    889


Q ss_pred             CCc-eeccCCCCCCCcceeccCCCCccceee---eeeEEEEec---CCCeEEEeeccCCeEEEeeeccccccccccc---
Q psy682          124 DPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV---RHNCFVTTV---DSRFLLACGFWDNSFREPFTTMYLALQEGKF---  193 (330)
Q Consensus       124 D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~sp---Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~---  193 (330)
                      |+. +++++.++  .+..+.+...-......   ...+++|+|   +++++++ |+.|++|++ |++.+++....+.   
T Consensus       179 ~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i-~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          179 EERVVCAGYDNG--DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHV-FDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CCCEEEEEETTS--EEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEE-EEEEEEETTTEEEEEE
T ss_pred             CCCEEEEEccCC--eEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEE-EeCcCCCcccceeeec
Confidence            999 55433333  33344432211111111   125888999   9998555 568999999 9999888877776   


Q ss_pred             --CCCCcEE----Ee--H-HHHHhhhccCCCcEEEEccc-C-------------------ceeeecCCCCCCCCCcEEEe
Q psy682          194 --DHPNRLF----SS--I-SLAWKNCQRDTSDVKVHTTF-G-------------------DLLRSLDPPSGFASPESVVM  244 (330)
Q Consensus       194 --gH~d~Vi----aS--t-~~lW~~SgS~Dgtvkl~~~~-G-------------------~ll~tL~~h~~~~~v~~v~f  244 (330)
                        +|...|.    .+  . ..+   +|+.||+|+||+.. +                   +++.++.+|.+  .|.+++|
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~  329 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFL---TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDW  329 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEE---EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEE
T ss_pred             cCCCcCCEEEEEECCCCCcEEE---EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC--CeeEEEE
Confidence              9999882    22  2 444   89999999999863 1                   57889999988  9999999


Q ss_pred             CCCccEEE-Ecc-CCeEEEEeeC
Q psy682          245 SREGVIVV-NYE-RGHIAAFTMN  265 (330)
Q Consensus       245 S~dG~~l~-s~~-~~~~~~~s~n  265 (330)
                      +|||+.|| +++ ++.+++|.+.
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cCCCCeEEEEecCCCcEEEEECC
Confidence            99999888 675 8899999865

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=2.1e-24  Score=202.65  Aligned_cols=237  Identities=11%  Similarity=0.063  Sum_probs=175.0

Q ss_pred             CcccCCCcEEEeeccccc------ccceeecCCCceeEEEeCCC----C---Cc------------------Cc-----c
Q psy682            1 MSGGDKGIVEVWRTFNLA------LLYAFPSCDSSVRSLALSHD----Q---KY------------------SP-----M   44 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~------~l~tl~gH~~~V~svafSpd----g---~~------------------~~-----l   44 (330)
                      |+|+.||+|++|++.+++      .+.++.+|...|.+++|+|+    |   ++                  ..     +
T Consensus        30 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  109 (397)
T 1sq9_A           30 VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF  109 (397)
T ss_dssp             EEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE
T ss_pred             EEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccc
Confidence            578999999999999887      78999999999999999999    8   65                  11     2


Q ss_pred             eeeeec-----CccEEEEEeC----CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC------CC-cc-----
Q psy682           45 MFSTVL-----DDVCMSLKFP----SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY------AA-SI-----  103 (330)
Q Consensus        45 ~~~~~~-----~d~~~~v~Fs----~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~------~~-~~-----  103 (330)
                      .....|     ...|..++|+    |+++.                .+++++.++.|++|+...      .. +.     
T Consensus       110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  173 (397)
T 1sq9_A          110 EKLDLLDSDMKKHSFWALKWGASNDRLLSH----------------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  173 (397)
T ss_dssp             EEECCSCTTGGGSCEEEEEEECCC----CE----------------EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             eeecccccccCCCcEEEEEEeeccCCCCce----------------EEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence            333455     4777888888    77775                147778889999999876      33 33     


Q ss_pred             cC-------CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee---e------eeEEEEecCCCe
Q psy682          104 QS-------PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV---R------HNCFVTTVDSRF  166 (330)
Q Consensus       104 ~~-------~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~---~------~~~~~~spDg~~  166 (330)
                      .+       ..|.    ..+.++.|+||+.+++++.++  .+..+.+.. .....+..   +      ..+++|+||+++
T Consensus       174 ~~~~~~~~~~~~~----~~i~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          174 ELQGTVESPMTPS----QFATSVDISERGLIATGFNNG--TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             EEEEEECCSSSSC----CCCCEEEECTTSEEEEECTTS--EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eeeeeeccccCCC----CCceEEEECCCceEEEEeCCC--cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence            33       2244    467889999999444323333  334444321 12233444   3      358889999998


Q ss_pred             EEEeeccC---CeEEEeeecccccccccccC-------------CCCcEE----Ee--HHHHHhhhccCCCcEEEEcc-c
Q psy682          167 LLACGFWD---NSFREPFTTMYLALQEGKFD-------------HPNRLF----SS--ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       167 i~asg~~D---~tirl~w~~~~g~l~~~l~g-------------H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                      | ++|+.|   +.|++ |++.+++.+..+.+             |...|.    ..  ...+   +|+.||+|+||+. +
T Consensus       248 l-~~~~~d~~~g~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          248 L-AIAHDSNSFGCITL-YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC---SAGWDGKLRFWDVKT  322 (397)
T ss_dssp             E-EEEEEETTEEEEEE-EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE---EEETTSEEEEEETTT
T ss_pred             E-EEEecCCCCceEEE-EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE---EEeCCCeEEEEEcCC
Confidence            5 455679   99999 99999999999998             988872    21  3333   8999999999976 7


Q ss_pred             CceeeecC------CC---------------CCCCCCcEEEeCCCc----------cEEEEcc-CCeEEEEeeCC
Q psy682          224 GDLLRSLD------PP---------------SGFASPESVVMSREG----------VIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       224 G~ll~tL~------~h---------------~~~~~v~~v~fS~dG----------~~l~s~~-~~~~~~~s~nG  266 (330)
                      |+.++++.      +|               ..  .|.+++|+|||          ++|++++ ++.++.|.+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCC--ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            99999999      87               77  99999999999          7888885 88999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.8e-24  Score=202.77  Aligned_cols=220  Identities=12%  Similarity=0.114  Sum_probs=156.0

Q ss_pred             cccccceeecCCCceeEEEeCCCCCc--------------Cc-----ceee-ee-cCccEEEEEeCCCCCeeEeeeccce
Q psy682           16 NLALLYAFPSCDSSVRSLALSHDQKY--------------SP-----MMFS-TV-LDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus        16 ~g~~l~tl~gH~~~V~svafSpdg~~--------------~~-----l~~~-~~-~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      ..+++.+|++|.+.|++++|+|+ .+              ..     ...+ .+ |.+.|..++|+|+++.+        
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l--------   73 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL--------   73 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE--------
T ss_pred             ccccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE--------
Confidence            45678899999999999999997 22              00     1112 23 88889999999999875        


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCC--------CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYA--------ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD  145 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~--------~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~  145 (330)
                               |+++.|++|++|+....        .+..+.+|.    +.+.++.|+||+. +++++.++.  +..|.+..
T Consensus        74 ---------as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~----~~V~~v~~sp~g~~las~s~D~~--v~iwd~~~  138 (330)
T 2hes_X           74 ---------AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE----NEVKGVAWSNDGYYLATCSRDKS--VWIWETDE  138 (330)
T ss_dssp             ---------EEEETTSCEEEEEC-------CCCEEEEEEC--------CEEEEEECTTSCEEEEEETTSC--EEEEECCT
T ss_pred             ---------EEEeCCCcEEEEEcccCcCccccceeEEEEcCCC----CcEEEEEECCCCCEEEEEeCCCE--EEEEeccC
Confidence                     88888999999998431        234456887    4677899999999 665444444  34444411


Q ss_pred             ---C--Cccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccc--cccccccCCCCcEE----EeH----HHHH
Q psy682          146 ---N--FSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDHPNRLF----SSI----SLAW  207 (330)
Q Consensus       146 ---~--~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH~d~Vi----aSt----~~lW  207 (330)
                         .  ....+..|.   .+++|+||+++ +++|+.|++||+ |+..++  +.+..+.+|.+.|.    ...    ..+ 
T Consensus       139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~i-W~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-  215 (330)
T 2hes_X          139 SGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRI-WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC-  215 (330)
T ss_dssp             TCCCCEEEEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEE-EEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE-
T ss_pred             CCCCeEEEEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEE-EECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE-
Confidence               1  112233442   58889999998 556668999999 998765  67889999999883    221    233 


Q ss_pred             hhhccCCCcEEEEcccC---------ceeeecCC-CCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          208 KNCQRDTSDVKVHTTFG---------DLLRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~~G---------~ll~tL~~-h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                        |||.||+|+||+..+         +.+.++.+ |..  .|++|+|++++.++..+.++.+++|..+.
T Consensus       216 --s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          216 --SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR--QVYNVAWGFNGLIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             --EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS--CEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred             --EEeCCCeEEEEEecCCCccccceeEEeeeccccccc--ceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence              899999999998643         46677776 877  99999999888554444699999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.9e-24  Score=195.51  Aligned_cols=238  Identities=10%  Similarity=0.075  Sum_probs=169.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+++.+.++.+|...|++++|+||++.                  ..+... .+...+..+.|+|+
T Consensus        48 ~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~  126 (369)
T 3zwl_B           48 FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVKRVEFSPC  126 (369)
T ss_dssp             EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecCCCeEEEEEccC
Confidence            57889999999999999999999999999999999999987                  111111 25566777788888


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCc-----ceEEEeCCCCCC------------cccCCCCCCCCCCCCCCccccCCC
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQ-----FAINRWNPDYAA------------SIQSPSYAETPGSPPGNLPLTLDP  125 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~-----~tv~lW~~~~~~------------~~~~~~h~~~~~~~~~~l~fs~D~  125 (330)
                      ++.+                 ++++.+     +.|++|+.....            .....+|.+  ...+.++.|+||+
T Consensus       127 ~~~l-----------------~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  187 (369)
T 3zwl_B          127 GNYF-----------------LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG--LDAATVAGWSTKG  187 (369)
T ss_dssp             SSEE-----------------EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT--CCCEEEEEECGGG
T ss_pred             CCEE-----------------EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC--ccceeEEEEcCCC
Confidence            8765                 444444     889999986542            122223331  1256789999999


Q ss_pred             c-eeccCCCCCCCcceeccCC--CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE
Q psy682          126 I-LTHPTSNNNAPVPKRHLGD--NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       126 ~-l~~~s~~~~~~~~~~~l~~--~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                      . +++++.++  .+..+.+..  .....+..+   ..+++|+||+++|+ +++.|++|++ |++.+++++..+. |...+
T Consensus       188 ~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v-~d~~~~~~~~~~~-~~~~~  262 (369)
T 3zwl_B          188 KYIIAGHKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI-TSSRDTNSFL-VDVSTLQVLKKYE-TDCPL  262 (369)
T ss_dssp             CEEEEEETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEE-EETTTCCEEEEEE-CSSCE
T ss_pred             CEEEEEcCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE-EecCCceEEE-EECCCCceeeeec-CCCCc
Confidence            8 55433332  344455432  122223333   25788999999955 5568999999 9999998887776 44434


Q ss_pred             ----EEe--HHHHHhhhccCCC--------------cEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC
Q psy682          200 ----FSS--ISLAWKNCQRDTS--------------DVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG  257 (330)
Q Consensus       200 ----iaS--t~~lW~~SgS~Dg--------------tvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~  257 (330)
                          +..  ...+   .|+.|+              +|++|+. +|+.+.++.+|.+  .|.+++|+|||+.||+++ ++
T Consensus       263 ~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          263 NTAVITPLKEFII---LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--PLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             EEEEECSSSSEEE---EEECCC-------------CEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred             eeEEecCCCceEE---EeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--cEEEEEECCCCCEEEEEcCCC
Confidence                111  1111   334444              8999975 7999999999999  999999999999999995 88


Q ss_pred             eEEEEeeCCce
Q psy682          258 HIAAFTMNGNR  268 (330)
Q Consensus       258 ~~~~~s~nG~~  268 (330)
                      .+++|..+...
T Consensus       338 ~v~iw~~~~~~  348 (369)
T 3zwl_B          338 FIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEEECHHH
T ss_pred             eEEEEECcccc
Confidence            99999987643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-24  Score=204.64  Aligned_cols=241  Identities=13%  Similarity=0.077  Sum_probs=168.7

Q ss_pred             CcccCCCcEEEeeccc----ccccceeecCCCceeEEEeCCC-CCc------------------C------ccee---ee
Q psy682            1 MSGGDKGIVEVWRTFN----LALLYAFPSCDSSVRSLALSHD-QKY------------------S------PMMF---ST   48 (330)
Q Consensus         1 asgs~d~~V~lW~~~~----g~~l~tl~gH~~~V~svafSpd-g~~------------------~------~l~~---~~   48 (330)
                      |+|+.||+|++|++.+    .+.+.++.+|...|++++|+|| +++                  .      ....   ..
T Consensus        83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence            4788999999999987    3588899999999999999998 665                  1      0001   13


Q ss_pred             ecCccEEEEEeCCC-CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCC--CCCCCCCccccCC
Q psy682           49 VLDDVCMSLKFPSN-SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAET--PGSPPGNLPLTLD  124 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~-~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~--~~~~~~~l~fs~D  124 (330)
                      +|.+.+..+.|+|+ +.+                 +++++.+++|++|+....... ....|...  ....+.++.|+||
T Consensus       163 ~~~~~v~~~~~~~~~~~~-----------------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHV-----------------FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             CSSCCCCEEEECSSCTTE-----------------EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             CCCCCeeEEEeCCCCCcE-----------------EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence            56677788888887 454                 488889999999999765433 33333100  0246788999999


Q ss_pred             Cc--eeccCCCCCC-CcceeccCC--CCcccee-eee---eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccC
Q psy682          125 PI--LTHPTSNNNA-PVPKRHLGD--NFSQKLR-VRH---NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFD  194 (330)
Q Consensus       125 ~~--l~~~s~~~~~-~~~~~~l~~--~~~~~~~-~~~---~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~g  194 (330)
                      +.  +++++.++.. .+..+.+..  .....+. .+.   .+++|+| |+++ +++|+.|++|++ |++.+++++..+.+
T Consensus       226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~-wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLL-WNPESAEQLSQFPA  303 (416)
T ss_dssp             CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEE-ECSSSCCEEEEEEC
T ss_pred             CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEE-eeCCCCccceeecC
Confidence            73  5554444300 333444322  2233444 443   5888999 8888 555668999999 99999999999999


Q ss_pred             CCCcE----EEe---HHHHHhhhccCCCcEEEEccc-CceeeecCC----------------------------------
Q psy682          195 HPNRL----FSS---ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDP----------------------------------  232 (330)
Q Consensus       195 H~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~----------------------------------  232 (330)
                      |.+.|    +..   ...+   +|+.||+|+||+.. ++...+...                                  
T Consensus       304 ~~~~v~~~~~s~~~~~~l~---s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFA---CASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPT  380 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEE---ECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCS
T ss_pred             CCCceEEEEECCCCCCEEE---EEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCc
Confidence            99877    222   2334   89999999999863 443332211                                  


Q ss_pred             -CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          233 -PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       233 -h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                       |..  .|.+++|||||++||+++ ++.+++|.+.
T Consensus       381 ~~~~--~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          381 WYGE--PSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             TTCC--CSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             cccC--CccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence             344  788999999999999996 7788888754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=8e-24  Score=228.60  Aligned_cols=263  Identities=10%  Similarity=0.066  Sum_probs=193.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+|+.+.++.+|.+.|.+++|||||++                  ..+..+.+|...+..+.|+|+
T Consensus       631 ~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  710 (1249)
T 3sfz_A          631 ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK  710 (1249)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence            57899999999999999999999999999999999999987                  223445689999999999994


Q ss_pred             --CCeeEeeeccc-------------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCC---------
Q psy682           63 --SPICHVTANTY-------------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSP---------  106 (330)
Q Consensus        63 --~~v~~~~~~~~-------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~---------  106 (330)
                        ..+++.+..+.                         ..+.+++...++++.|++|++|+..........         
T Consensus       711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  790 (1249)
T 3sfz_A          711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS  790 (1249)
T ss_dssp             SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence              44555554322                         356677778899999999999998654321110         


Q ss_pred             -CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Ccccee-ee---eeEEEEecCCCeEEEeeccCCeEEEe
Q psy682          107 -SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLR-VR---HNCFVTTVDSRFLLACGFWDNSFREP  180 (330)
Q Consensus       107 -~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~-~~---~~~~~~spDg~~i~asg~~D~tirl~  180 (330)
                       .........+.++.|+||+.+...++++  .+..+.+... ....+. .+   ..+++|+||+++ +++|+.|++|++ 
T Consensus       791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~v-  866 (1249)
T 3sfz_A          791 EDPPEDVEVIVKCCSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVEL-  866 (1249)
T ss_dssp             -----CCCCCBCCCCBCTTSSEEEEEETT--EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE-EEEECSSSCEEE-
T ss_pred             CCccccccceEEEEEECCCCCEEEEEcCC--cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE-EEEEeCCCeEEE-
Confidence             1111122367789999999944433332  3333333211 001111 11   257889999998 555668999999 


Q ss_pred             eecccccccccccCCCCcE-----------EEe-----HHHHHhh-----------------------------------
Q psy682          181 FTTMYLALQEGKFDHPNRL-----------FSS-----ISLAWKN-----------------------------------  209 (330)
Q Consensus       181 w~~~~g~l~~~l~gH~d~V-----------iaS-----t~~lW~~-----------------------------------  209 (330)
                      |++++++.+..+.+|.+.|           +++     ++++|+.                                   
T Consensus       867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            9999999999999999987           222     6777752                                   


Q ss_pred             -------------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-C
Q psy682          210 -------------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R  256 (330)
Q Consensus       210 -------------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~  256 (330)
                                                     +|+.||+|++|+. +|+.+.++.+|.+  .|.+++|||||+.|++++ +
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK--AVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS--CCCCEEECSSSSCEEEECSS
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC--ceEEEEECCCCCEEEEEcCC
Confidence                                           4678888888865 6899999999999  999999999999999985 8


Q ss_pred             CeEEEEeeCCcee
Q psy682          257 GHIAAFTMNGNRL  269 (330)
Q Consensus       257 ~~~~~~s~nG~~l  269 (330)
                      +.+..|.......
T Consensus      1025 g~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A         1025 SVIQVWNWQTGDY 1037 (1249)
T ss_dssp             SBEEEEETTTTEE
T ss_pred             CEEEEEECCCCce
Confidence            8899998665443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.91  E-value=1.5e-23  Score=198.93  Aligned_cols=237  Identities=9%  Similarity=0.045  Sum_probs=171.5

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +...+|+||.+.|++++|+|||+.                  ........+...++.++|+|++..              
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~--------------  120 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA--------------  120 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE--------------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE--------------
Confidence            456789999999999999999987                  111223355566777778888776              


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC-------cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682           80 SVVTVTANHQFAINRWNPDYAA-------SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL  151 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~-------~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~  151 (330)
                         +|+++.|+++++|+.....       .....+|.    ..+.++.|++|+. +++++.++...+|....+. ..+++
T Consensus       121 ---lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~  192 (354)
T 2pbi_B          121 ---IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT----NYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSF  192 (354)
T ss_dssp             ---EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS----SCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred             ---EEEeeCCCCEEEEEEeccccccccccceeeeccC----CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE
Confidence               4899999999999875431       23344676    3567899999997 7765555544444333222 22445


Q ss_pred             eeee---eEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EE--e--HHHHHhhhccCCCcEEEE
Q psy682          152 RVRH---NCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS--S--ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       152 ~~~~---~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia--S--t~~lW~~SgS~Dgtvkl~  220 (330)
                      .+|.   .+++++|  +|++ +++|+.|++|++ |++.+++.++.+.+|.+.|  ++  +  ...+   +||.||+|+||
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~-l~sgs~Dg~v~~-wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~---s~s~D~~v~lw  267 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNT-FVSGGCDKKAMV-WDMRSGQCVQAFETHESDVNSVRYYPSGDAFA---SGSDDATCRLY  267 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEE
T ss_pred             cCCCCCeEEEEEEeCCCCCE-EEEEeCCCeEEE-EECCCCcEEEEecCCCCCeEEEEEeCCCCEEE---EEeCCCeEEEE
Confidence            5553   4667766  5777 556678999999 9999999999999999988  22  1  3333   89999999999


Q ss_pred             cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc-cccccc
Q psy682          221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~-~dVkEL  281 (330)
                      +. .++.+..+..+.....+.+++|||+|++|++++ ++++++|.. +|+.+..+..| +.|..|
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL  332 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence            86 567777776654323789999999999999985 789999986 78888777644 334443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.90  E-value=5e-24  Score=197.55  Aligned_cols=214  Identities=12%  Similarity=0.060  Sum_probs=165.9

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.|++|++|++.+++  .+.++.+|...|.+++|+|||++                                     
T Consensus        24 ~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------------------------------------   66 (372)
T 1k8k_C           24 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-------------------------------------   66 (372)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-------------------------------------
T ss_pred             EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE-------------------------------------
Confidence            468899999999998887  88999999999999999998877                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC--ccce-
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF--SQKL-  151 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~--~~~~-  151 (330)
                          +++++.+++|++|+.....   .....+|.    ..+.++.|+||+. +++++.++...++....+...  ...+ 
T Consensus        67 ----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  138 (372)
T 1k8k_C           67 ----IVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  138 (372)
T ss_dssp             ----EEEEETTSCEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             ----EEEEcCCCeEEEEECCCCeeeeeEEeecCC----CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence                4677788899999986654   23335665    4677899999998 665444444434433322210  0111 


Q ss_pred             ---eeeeeEEEEecCCCeEEEeeccCCeEEEeeec------------------ccccccccccCCCCcEE----Ee--HH
Q psy682          152 ---RVRHNCFVTTVDSRFLLACGFWDNSFREPFTT------------------MYLALQEGKFDHPNRLF----SS--IS  204 (330)
Q Consensus       152 ---~~~~~~~~~spDg~~i~asg~~D~tirl~w~~------------------~~g~l~~~l~gH~d~Vi----aS--t~  204 (330)
                         .....+++|+||+++ +++|+.|++|++ |++                  ..++++..+.+|...|.    ..  ..
T Consensus       139 ~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (372)
T 1k8k_C          139 KPIRSTVLSLDWHPNSVL-LAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  216 (372)
T ss_dssp             TTCCSCEEEEEECTTSSE-EEEEETTSCEEE-EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccCCCeeEEEEcCCCCE-EEEEcCCCCEEE-EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence               112358899999998 555668999999 994                  36788888889998872    11  33


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                      .+   +|+.||+|++|+. +|++++++.+|..  .|.+++|+|||++|+++.++.++.|..+.
T Consensus       217 l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          217 VA---WVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EE---EEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EE---EEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            33   8999999999976 7999999999988  89999999999999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=1.3e-23  Score=215.98  Aligned_cols=245  Identities=11%  Similarity=0.097  Sum_probs=187.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+|+.+.++.+|...|.+++|||||+.                  ..+....+|.+.+..+.|+|+
T Consensus        29 a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~  108 (814)
T 3mkq_A           29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT  108 (814)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC
Confidence            57889999999999999999999999999999999999987                  222345678899999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-C-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCc
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-A-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPV  138 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~  138 (330)
                      ++.+                 ++++.+++|++|+.+.+ . .....+|.    ..+.++.|+| |+. +++++.++.  +
T Consensus       109 ~~~l-----------------~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~--v  165 (814)
T 3mkq_A          109 KPYV-----------------LSGSDDLTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFASGCLDRT--V  165 (814)
T ss_dssp             SSEE-----------------EEEETTSEEEEEEGGGTSEEEEEEECCS----SCEEEEEEETTEEEEEEEEETTSE--E
T ss_pred             CCEE-----------------EEEcCCCEEEEEECCCCceEEEEEcCCC----CcEEEEEEEcCCCCEEEEEeCCCe--E
Confidence            9975                 77888999999998754 2 34445776    4677899999 886 665444433  3


Q ss_pred             ceeccCCC-Cccceeee----eeEEEEec--CCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHH
Q psy682          139 PKRHLGDN-FSQKLRVR----HNCFVTTV--DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISL  205 (330)
Q Consensus       139 ~~~~l~~~-~~~~~~~~----~~~~~~sp--Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~  205 (330)
                      ..|.+... ....+..+    ..+++++|  |+++ +++|+.|++|++ |++.+++.+..+.+|...|.    .+  ...
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  243 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKI-WDYQTKSCVATLEGHMSNVSFAVFHPTLPII  243 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEE-EETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            44444221 11122222    25788998  9998 555668999999 99999999999999998872    11  333


Q ss_pred             HHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc--EEEEccCCeEEEE-----------eeCCceeee
Q psy682          206 AWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAF-----------TMNGNRLRH  271 (330)
Q Consensus       206 lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~--~l~s~~~~~~~~~-----------s~nG~~las  271 (330)
                      +   +|+.||+|++|+. +|++++++..|..  .|.+++|+|+|.  +++++.++.++.|           +++|+.+++
T Consensus       244 ~---~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  318 (814)
T 3mkq_A          244 I---SGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS  318 (814)
T ss_dssp             E---EEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred             E---EEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence            3   8999999999976 6899999999988  999999999998  6777766655444           567888876


Q ss_pred             ccCc
Q psy682          272 ESHN  275 (330)
Q Consensus       272 ~~~~  275 (330)
                      ...+
T Consensus       319 ~~~~  322 (814)
T 3mkq_A          319 GGKN  322 (814)
T ss_dssp             CCTT
T ss_pred             Cccc
Confidence            5433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.90  E-value=2.2e-23  Score=199.77  Aligned_cols=243  Identities=14%  Similarity=0.105  Sum_probs=168.4

Q ss_pred             cEEEeeccccc-----ccceeecCCCceeEEEeCCCCCc------C-----------cceeeeec---------------
Q psy682            8 IVEVWRTFNLA-----LLYAFPSCDSSVRSLALSHDQKY------S-----------PMMFSTVL---------------   50 (330)
Q Consensus         8 ~V~lW~~~~g~-----~l~tl~gH~~~V~svafSpdg~~------~-----------~l~~~~~~---------------   50 (330)
                      ...+|+....+     +... .+|.+.|++++|||||++      .           .+..+.++               
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~  119 (393)
T 1erj_A           41 YYILYNPALPREIDVELHKS-LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS  119 (393)
T ss_dssp             CEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC----------------
T ss_pred             eEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCcccccccccccccccc
Confidence            34577654322     2223 379999999999999997      0           00111111               


Q ss_pred             ---CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc
Q psy682           51 ---DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI  126 (330)
Q Consensus        51 ---~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~  126 (330)
                         +..|..++|+||++.+                 |+++.|++|++|+..... ...+.+|..    .+.++.|+||+.
T Consensus       120 ~~~~~~v~~v~~s~dg~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~  178 (393)
T 1erj_A          120 PSSDLYIRSVCFSPDGKFL-----------------ATGAEDRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGD  178 (393)
T ss_dssp             -CCCCBEEEEEECTTSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSS
T ss_pred             CCCceeEEEEEECCCCCEE-----------------EEEcCCCeEEEEECCCCcEEEEEccCCC----CEEEEEEcCCCC
Confidence               1136777777777764                 888889999999997655 455668974    677899999998


Q ss_pred             -eeccCCCCCCCcceeccCCC-Cccceee--eeeEEEEec-CCCeEEEeeccCCeEEEeeecccccccccc-------cC
Q psy682          127 -LTHPTSNNNAPVPKRHLGDN-FSQKLRV--RHNCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGK-------FD  194 (330)
Q Consensus       127 -l~~~s~~~~~~~~~~~l~~~-~~~~~~~--~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l-------~g  194 (330)
                       +++++.++.  +..|.+... ....+..  ...+++++| ||++ +++|+.|++||+ |++.+++++..+       .+
T Consensus       179 ~l~s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~s~d~~v~i-wd~~~~~~~~~~~~~~~~~~~  254 (393)
T 1erj_A          179 KLVSGSGDRT--VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRV-WDSETGFLVERLDSENESGTG  254 (393)
T ss_dssp             EEEEEETTSE--EEEEETTTTEEEEEEECSSCEEEEEECSTTCCE-EEEEETTSCEEE-EETTTCCEEEEEC------CC
T ss_pred             EEEEecCCCc--EEEEECCCCeeEEEEEcCCCcEEEEEECCCCCE-EEEEcCCCcEEE-EECCCCcEEEeecccccCCCC
Confidence             655444433  344444221 1111111  135788999 8988 556678999999 999988877666       68


Q ss_pred             CCCcEE----Ee--HHHHHhhhccCCCcEEEEccc-------------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          195 HPNRLF----SS--ISLAWKNCQRDTSDVKVHTTF-------------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       195 H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~-------------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      |.+.|.    ..  ...+   +||.||+|+||+..             |....++.+|.+  .|.+++|+|+|+.|++++
T Consensus       255 h~~~v~~v~~~~~g~~l~---s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVV---SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             CSSCEEEEEECTTSSEEE---EEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEE---EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEe
Confidence            998882    11  3334   89999999999753             567788999999  999999999999999995


Q ss_pred             -CCeEEEEee-CCceeeeccCc-cccccc
Q psy682          256 -RGHIAAFTM-NGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       256 -~~~~~~~s~-nG~~las~~~~-~dVkEL  281 (330)
                       ++.+++|.. +|+.+..+..| ..|..+
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence             788999975 57777777654 334443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=3e-23  Score=197.80  Aligned_cols=236  Identities=9%  Similarity=0.064  Sum_probs=165.7

Q ss_pred             CcccCCCcEEEeeccccc-----------ccceeecCC------------CceeEEEeCCCCC--c-------Ccc----
Q psy682            1 MSGGDKGIVEVWRTFNLA-----------LLYAFPSCD------------SSVRSLALSHDQK--Y-------SPM----   44 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~-----------~l~tl~gH~------------~~V~svafSpdg~--~-------~~l----   44 (330)
                      |+|+.||+|+||++.+++           .+.++.+|.            +.|.+|+|+|++.  .       ..+    
T Consensus        44 a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~  123 (447)
T 3dw8_B           44 ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK  123 (447)
T ss_dssp             EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEE
T ss_pred             EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEe
Confidence            578999999999998877           588899999            8999999999983  3       000    


Q ss_pred             -----------------------------------------------eeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682           45 -----------------------------------------------MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus        45 -----------------------------------------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                                                                     .+..+|.+.|..++|+|+++.+           
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-----------  192 (447)
T 3dw8_B          124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY-----------  192 (447)
T ss_dssp             EEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE-----------
T ss_pred             cccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE-----------
Confidence                                                           0123577778888888888864           


Q ss_pred             CCcEEEEEcCCcceEEEeCCC-CCCcc--------cCCCCCCCCCCCCCCccccCCC-c-eeccCCCCCCCcceeccCCC
Q psy682           78 MPSVVTVTANHQFAINRWNPD-YAASI--------QSPSYAETPGSPPGNLPLTLDP-I-LTHPTSNNNAPVPKRHLGDN  146 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~-~~~~~--------~~~~h~~~~~~~~~~l~fs~D~-~-l~~~s~~~~~~~~~~~l~~~  146 (330)
                            +++ .|++|++|+.. .....        +..+|.    ..+.++.|+||+ . +++++.++...+|....+..
T Consensus       193 ------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          193 ------LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT----EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             ------EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC----CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             ------EEe-CCCeEEEEECCCCCceeeeeecccccccccC----cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence                  666 69999999997 23222        244776    467889999998 5 66545544443333222221


Q ss_pred             C---ccceeee---------------eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCc---------
Q psy682          147 F---SQKLRVR---------------HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNR---------  198 (330)
Q Consensus       147 ~---~~~~~~~---------------~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~---------  198 (330)
                      .   ...+..+               ..+++|+|||++|++ |+. ++|++ |++.+ ++++..+.+|...         
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~-~~v~i-wd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT-RDY-LSVKV-WDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE-EES-SEEEE-EETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE-eeC-CeEEE-EeCCCCccccceeecccccccccccccc
Confidence            0   1333332               358889999999655 544 99999 99987 8999999999642         


Q ss_pred             ---------E-EEe--HHHHHhhhccCCCcEEEEcccCceeeecCCCCC-------------------------------
Q psy682          199 ---------L-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG-------------------------------  235 (330)
Q Consensus       199 ---------V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~-------------------------------  235 (330)
                               + +..  ...+   +||.||+|+||+.+.....+|.+|..                               
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~---s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVM---TGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF  415 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEE---EECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred             ccccccceEEEECCCCCEEE---EeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccccc
Confidence                     2 221  2223   89999999999875433335555431                               


Q ss_pred             CCCCcEEEeCCCccEEEEccCCeEEEEee
Q psy682          236 FASPESVVMSREGVIVVNYERGHIAAFTM  264 (330)
Q Consensus       236 ~~~v~~v~fS~dG~~l~s~~~~~~~~~s~  264 (330)
                      ...|..++|+|+|.+||.++.+.+++|+-
T Consensus       416 ~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          416 NKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             TSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEecceeeeecc
Confidence            12688999999999999998888888873

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.1e-22  Score=194.47  Aligned_cols=237  Identities=13%  Similarity=0.037  Sum_probs=166.7

Q ss_pred             CcccCCCcEEEeecccccccceeec-CCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPS-CDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~g-H~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~   61 (330)
                      ++++.||+|++|++.+|+....+.. |...|.+|+|+|||++                  ..+....+|...+..+.|  
T Consensus       107 ~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--  184 (401)
T 4aez_A          107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--  184 (401)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--
T ss_pred             EEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--
Confidence            4678999999999999998888876 8999999999999987                  111112234444444444  


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC--CcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA--ASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV  138 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~--~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~  138 (330)
                      ++.                 .+++++.+++|++|+....  ......+|.+    .+.++.|+||+. +++++.++  .+
T Consensus       185 ~~~-----------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~d~--~v  241 (401)
T 4aez_A          185 NRH-----------------VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS----EVCGLAWRSDGLQLASGGNDN--VV  241 (401)
T ss_dssp             ETT-----------------EEEEEETTSEEEEEETTSSSCEEEEEECCSS----CEEEEEECTTSSEEEEEETTS--CE
T ss_pred             CCC-----------------EEEEEcCCCCEEEEecccCcceeeEEcCCCC----CeeEEEEcCCCCEEEEEeCCC--eE
Confidence            222                 3588888999999999732  2445558874    677899999998 66534433  34


Q ss_pred             ceeccCCC-Cccceeee---eeEEEEecCCCeEEEeec--cCCeEEEeeecccccccccccCCCCcE-E--Ee--HHHHH
Q psy682          139 PKRHLGDN-FSQKLRVR---HNCFVTTVDSRFLLACGF--WDNSFREPFTTMYLALQEGKFDHPNRL-F--SS--ISLAW  207 (330)
Q Consensus       139 ~~~~l~~~-~~~~~~~~---~~~~~~spDg~~i~asg~--~D~tirl~w~~~~g~l~~~l~gH~d~V-i--aS--t~~lW  207 (330)
                      ..|.+... ....+..+   ..+++++|+++.++++|+  .|++|++ |++.+++++..+..+..+. +  ..  ...+ 
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i-~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  319 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF-WNAATGARVNTVDAGSQVTSLIWSPHSKEIM-  319 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE-EETTTCCEEEEEECSSCEEEEEECSSSSEEE-
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE-EECCCCCEEEEEeCCCcEEEEEECCCCCeEE-
Confidence            44444321 11122222   258899999988888865  8999999 9999999888876544322 1  11  1111 


Q ss_pred             hhhccCCCcEEEEcc-cCceee--ecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          208 KNCQRDTSDVKVHTT-FGDLLR--SLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~-~G~ll~--tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      ..+|+.||+|+||+. +|+...  .+.+|.+  .|.+++|+|||+.|++++ ++.++.|.+..
T Consensus       320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDT--RVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEECTTTCEEEEEEEETTEEEEEEEEECCSS--CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             EEeecCCCcEEEEecCCccceeEEEecCCCC--CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            003779999999976 454544  4779988  999999999999999985 88999998753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.90  E-value=5.3e-23  Score=193.07  Aligned_cols=217  Identities=9%  Similarity=0.078  Sum_probs=159.0

Q ss_pred             cccceeecCCCceeEEEe-----CC-CCCc---------------C----------cceeeeecCccEEEEEeCCCCCee
Q psy682           18 ALLYAFPSCDSSVRSLAL-----SH-DQKY---------------S----------PMMFSTVLDDVCMSLKFPSNSPIC   66 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svaf-----Sp-dg~~---------------~----------~l~~~~~~~d~~~~v~Fs~~~~v~   66 (330)
                      ++..+|+||.+.|++|+|     +| ||++               .          +...+.+|.+.|..++|+|++..+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            566789999999999999     77 7776               0          112345788888888888888864


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~  144 (330)
                                       +|++.|++|++|+...+. +.++.+|.+    .+.++.|+||+. +++++.++.  +..|.+.
T Consensus        92 -----------------~s~s~D~~v~lwd~~~~~~~~~~~~h~~----~v~~v~~sp~~~~l~s~~~d~~--i~~wd~~  148 (343)
T 2xzm_R           92 -----------------ISSSWDKTLRLWDLRTGTTYKRFVGHQS----EVYSVAFSPDNRQILSAGAERE--IKLWNIL  148 (343)
T ss_dssp             -----------------EEEETTSEEEEEETTSSCEEEEEECCCS----CEEEEEECSSTTEEEEEETTSC--EEEEESS
T ss_pred             -----------------EEEcCCCcEEEEECCCCcEEEEEcCCCC----cEEEEEECCCCCEEEEEcCCCE--EEEEecc
Confidence                             888999999999987554 455668974    677899999998 665444443  4444432


Q ss_pred             CCCcc------ceeeeeeEEEEecCC----------CeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--
Q psy682          145 DNFSQ------KLRVRHNCFVTTVDS----------RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--  202 (330)
Q Consensus       145 ~~~~~------~~~~~~~~~~~spDg----------~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--  202 (330)
                      .....      .-.....+++|+|++          ++ +++|++|++||+ |+. .+++...+.+|...|.    ..  
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~i-wd~-~~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY-FASVGWDGRLKV-WNT-NFQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCE-EEEEETTSEEEE-EET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCE-EEEEcCCCEEEE-EcC-CCceeEEEcCccccceEEEECCCC
Confidence            21100      011123588899987          56 666779999999 996 5788888999999882    12  


Q ss_pred             HHHHHhhhccCCCcEEEEcc--cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          203 ISLAWKNCQRDTSDVKVHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       203 t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                      ...+   +||.||+|+||+.  .+...+.+. +..  .|.+|+|+|+|++|+.+.++.+++|....
T Consensus       226 ~~l~---sgs~dg~v~iwd~~~~~~~~~~~~-~~~--~v~~v~~sp~~~~la~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          226 KYIA---TGGKDKKLLIWDILNLTYPQREFD-AGS--TINQIAFNPKLQWVAVGTDQGVKIFNLMT  285 (343)
T ss_dssp             SEEE---EEETTCEEEEEESSCCSSCSEEEE-CSS--CEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred             CEEE---EEcCCCeEEEEECCCCcccceeec-CCC--cEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            3334   8999999999986  344555553 334  79999999999999988888999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.89  E-value=4.6e-23  Score=186.41  Aligned_cols=212  Identities=11%  Similarity=0.094  Sum_probs=159.2

Q ss_pred             CcccCCCcEEEeecccc----cccceeecCCCceeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682            1 MSGGDKGIVEVWRTFNL----ALLYAFPSCDSSVRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g----~~l~tl~gH~~~V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      |+|+.||+|++|++.++    +.+.++.+|...|.+++|+|  |+++                                 
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~---------------------------------   73 (351)
T 3f3f_A           27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI---------------------------------   73 (351)
T ss_dssp             EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE---------------------------------
T ss_pred             EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE---------------------------------
Confidence            57899999999999876    46778899999999999999  4655                                 


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCC----------cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCccee
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAA----------SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKR  141 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~----------~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~  141 (330)
                              +++++.|++|++|+.+...          .....+|.    ..+.++.|+||  +. +++++.++...+|..
T Consensus        74 --------l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           74 --------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK----GSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             --------EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             --------EEEEcCCCeEEEEecCCCcccccccCcceeeeecccC----CceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence                    4788889999999997643          44455776    46778999999  77 665444443333332


Q ss_pred             ccCCCCcccee----------------eeeeEEEEecC---CCeEEEeeccCCeEEEeeecccccc--cccccCCCCcE-
Q psy682          142 HLGDNFSQKLR----------------VRHNCFVTTVD---SRFLLACGFWDNSFREPFTTMYLAL--QEGKFDHPNRL-  199 (330)
Q Consensus       142 ~l~~~~~~~~~----------------~~~~~~~~spD---g~~i~asg~~D~tirl~w~~~~g~l--~~~l~gH~d~V-  199 (330)
                      ..+... +.+.                ....+++++|+   +++ +++++.|+.+.+ |....+++  +..+.+|.+.| 
T Consensus       142 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~  218 (351)
T 3f3f_A          142 LEPSDL-RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK-LAVSALEQAIIY-QRGKDGKLHVAAKLPGHKSLIR  218 (351)
T ss_dssp             SSTTCT-TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE-EEEEETTEEEEE-EECTTSCEEEEEECCCCCSCEE
T ss_pred             CChHHh-ccccccccccccccccCCcccceeEEEeccCCCCCcE-EEEecCCCcEEE-EccCCCceeeeeecCCCCccee
Confidence            212211 1111                12258889997   777 555668999988 88776765  77888999988 


Q ss_pred             -E--EeH------HHHHhhhccCCCcEEEEcccC----------------------------------------------
Q psy682          200 -F--SSI------SLAWKNCQRDTSDVKVHTTFG----------------------------------------------  224 (330)
Q Consensus       200 -i--aSt------~~lW~~SgS~Dgtvkl~~~~G----------------------------------------------  224 (330)
                       +  ...      ..+   +|+.||+|++|+...                                              
T Consensus       219 ~~~~~p~~~~~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (351)
T 3f3f_A          219 SISWAPSIGRWYQLIA---TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ  295 (351)
T ss_dssp             EEEECCCSSCSSEEEE---EEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred             EEEECCCCCCcceEEE---EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence             2  222      344   899999999997643                                              


Q ss_pred             -ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          225 -DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       225 -~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                       ++++++.+|.+  .|.+|+|+|||+.||+++ ++.+++|.++
T Consensus       296 ~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          296 VELLSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEEEEEECTTSS--CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ccEEEEEecccc--cEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence             78999999999  999999999999999995 8899999876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.9e-23  Score=223.47  Aligned_cols=243  Identities=9%  Similarity=0.027  Sum_probs=177.1

Q ss_pred             cccCCCcEEEeeccccccc-------ceeecCCCceeEEEeCCCCCc----------CcceeeeecCccEEEEEeCCCCC
Q psy682            2 SGGDKGIVEVWRTFNLALL-------YAFPSCDSSVRSLALSHDQKY----------SPMMFSTVLDDVCMSLKFPSNSP   64 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l-------~tl~gH~~~V~svafSpdg~~----------~~l~~~~~~~d~~~~v~Fs~~~~   64 (330)
                      +++.||+|++|++.+|+..       ..+.+|...|++++|+++...          .....+.+|...+.+++|+|+++
T Consensus       369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~  448 (902)
T 2oaj_A          369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT  448 (902)
T ss_dssp             EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE
T ss_pred             EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc
Confidence            4567899999999887543       246788899999999863211          11224568888888999999999


Q ss_pred             eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC------------CCCCCCCCCCCCCccccCCCc-eeccC
Q psy682           65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS------------PSYAETPGSPPGNLPLTLDPI-LTHPT  131 (330)
Q Consensus        65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~------------~~h~~~~~~~~~~l~fs~D~~-l~~~s  131 (330)
                      ++                 ||++.|++||+|+.+.+.+.+.            .+|.    ..+.+++|+||++ +++++
T Consensus       449 ~l-----------------aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~----~~V~svafspdg~~LAsgs  507 (902)
T 2oaj_A          449 AF-----------------ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE----LAVDKISFAAETLELAVSI  507 (902)
T ss_dssp             EE-----------------EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS----CCEEEEEEETTTTEEEEEE
T ss_pred             EE-----------------EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC----CceeEEEecCCCCeEEEEe
Confidence            75                 8999999999999987654432            1665    4688899999999 77766


Q ss_pred             CCCCCCcceeccCCCC--------------------------------------------ccceeeee---eEEEEecCC
Q psy682          132 SNNNAPVPKRHLGDNF--------------------------------------------SQKLRVRH---NCFVTTVDS  164 (330)
Q Consensus       132 ~~~~~~~~~~~l~~~~--------------------------------------------~~~~~~~~---~~~~~spDg  164 (330)
                      .++...+|...-+..+                                            ...+++|.   .+++|||||
T Consensus       508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG  587 (902)
T 2oaj_A          508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG  587 (902)
T ss_dssp             TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred             cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence            6666666654432110                                            12233343   589999999


Q ss_pred             CeEEEeeccCCeEEEeeeccccccc-----cccc-CCCCcE----EE----------eHHHHHhhhccCCCcEEEEcc--
Q psy682          165 RFLLACGFWDNSFREPFTTMYLALQ-----EGKF-DHPNRL----FS----------SISLAWKNCQRDTSDVKVHTT--  222 (330)
Q Consensus       165 ~~i~asg~~D~tirl~w~~~~g~l~-----~~l~-gH~d~V----ia----------St~~lW~~SgS~Dgtvkl~~~--  222 (330)
                       + +|+|+.|++||| |++++++++     +.+. +|.+.|    |.          +..++   |||.||||++|+.  
T Consensus       588 -~-lAsgs~D~tv~l-wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~---sgs~D~tv~~wd~~p  661 (902)
T 2oaj_A          588 -F-VGIAYAAGSLML-IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV---CGTDMGEVITYKILP  661 (902)
T ss_dssp             -E-EEEEETTSEEEE-EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE---EEETTSEEEEEEEEE
T ss_pred             -E-EEEEeCCCcEEE-EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE---EEecCCcEEEEEEec
Confidence             6 778889999999 999866553     3554 999998    44          12333   9999999999985  


Q ss_pred             --cCceeeecCCCCC---CCCCcEEE-eC----------------------CCccEEEEccCCeEEEEee-CCceeeec
Q psy682          223 --FGDLLRSLDPPSG---FASPESVV-MS----------------------REGVIVVNYERGHIAAFTM-NGNRLRHE  272 (330)
Q Consensus       223 --~G~ll~tL~~h~~---~~~v~~v~-fS----------------------~dG~~l~s~~~~~~~~~s~-nG~~las~  272 (330)
                        +|+++.+|.+|..   ...|.+|+ |+                      ++|++||++ +..+++|++ .||.+...
T Consensus       662 ~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~  739 (902)
T 2oaj_A          662 ASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKG  739 (902)
T ss_dssp             CGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEE
T ss_pred             CCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeE
Confidence              8999999999851   12788787 76                      889999998 556888876 45555444

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-22  Score=217.49  Aligned_cols=155  Identities=10%  Similarity=0.060  Sum_probs=113.2

Q ss_pred             CCCCccccCCCc-eeccCCCCCCCcceeccCCCCc-ccee---------ee---eeEEEEecCCCeEEEeeccCCeEEEe
Q psy682          115 PPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS-QKLR---------VR---HNCFVTTVDSRFLLACGFWDNSFREP  180 (330)
Q Consensus       115 ~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~-~~~~---------~~---~~~~~~spDg~~i~asg~~D~tirl~  180 (330)
                      .+.++.|+||+. +++++.+++..+|....+.... ..+.         .|   ..+++|+|||++ +|+|+.|++||| 
T Consensus       437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~-LAsgs~DgtV~l-  514 (902)
T 2oaj_A          437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE-LAVSIETGDVVL-  514 (902)
T ss_dssp             CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE-EEEEETTSCEEE-
T ss_pred             CCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe-EEEEecCcEEEE-
Confidence            456789999999 7765666655555433221100 1111         22   468999999998 666779999999 


Q ss_pred             eeccccc---------------------------------------------ccccccCCCCcE--E--Ee-HHHHHhhh
Q psy682          181 FTTMYLA---------------------------------------------LQEGKFDHPNRL--F--SS-ISLAWKNC  210 (330)
Q Consensus       181 w~~~~g~---------------------------------------------l~~~l~gH~d~V--i--aS-t~~lW~~S  210 (330)
                      |++++++                                             ++.++.+|.+.|  +  +. -..+   +
T Consensus       515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lA---s  591 (902)
T 2oaj_A          515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVG---I  591 (902)
T ss_dssp             EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEE---E
T ss_pred             EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEE---E
Confidence            9998763                                             256788899988  2  22 2223   8


Q ss_pred             ccCCCcEEEEcccCcee------eecC-CCCCCCCCcEEEeC-----CCc---cEEEEcc-CCeEEEEee----CCceee
Q psy682          211 QRDTSDVKVHTTFGDLL------RSLD-PPSGFASPESVVMS-----REG---VIVVNYE-RGHIAAFTM----NGNRLR  270 (330)
Q Consensus       211 gS~Dgtvkl~~~~G~ll------~tL~-~h~~~~~v~~v~fS-----~dG---~~l~s~~-~~~~~~~s~----nG~~la  270 (330)
                      ||.||+|+||+.++..+      +.+. +|.+  .|++|+||     |||   +.|++|+ ++++++|.+    +|+.++
T Consensus       592 gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~--~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~  669 (902)
T 2oaj_A          592 AYAAGSLMLIDRRGPAIIYMENIREISGAQSA--CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV  669 (902)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEGGGTCSSCCC--CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE
T ss_pred             EeCCCcEEEEECCCCeEEEEeehhHhcccccc--ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE
Confidence            99999999999876533      3564 8988  99999999     885   8999995 889999996    899888


Q ss_pred             eccCcc
Q psy682          271 HESHND  276 (330)
Q Consensus       271 s~~~~~  276 (330)
                      .+..+.
T Consensus       670 ~~~~~~  675 (902)
T 2oaj_A          670 QLMDIT  675 (902)
T ss_dssp             EEEEEE
T ss_pred             EecCce
Confidence            876553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.89  E-value=6.2e-23  Score=189.16  Aligned_cols=195  Identities=10%  Similarity=-0.033  Sum_probs=141.7

Q ss_pred             cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC
Q psy682           20 LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY   99 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~   99 (330)
                      +.++.+|.+.|++++|||||++                                         +||++.|++|++|+.++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~-----------------------------------------las~s~D~~v~iw~~~~   40 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKR-----------------------------------------MATCSSDKTIKIFEVEG   40 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSE-----------------------------------------EEEEETTSCEEEEEBCS
T ss_pred             ceeccCCcCceEEEEECCCCCE-----------------------------------------EEEEeCCCEEEEEecCC
Confidence            3456788888888888887776                                         48888999999999864


Q ss_pred             C---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCC-CCccceeee---eeEEEEecC--CCeE
Q psy682          100 A---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVR---HNCFVTTVD--SRFL  167 (330)
Q Consensus       100 ~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~---~~~~~~spD--g~~i  167 (330)
                      .   .+.++.+|.+    ++.++.|+++  +. +++++.++...+|....+. .....+..|   ..+++|+|+  |++ 
T Consensus        41 ~~~~~~~~l~gH~~----~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~-  115 (297)
T 2pm7_B           41 ETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPM-  115 (297)
T ss_dssp             SCBCCCEEECCCSS----CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSE-
T ss_pred             CCcEEEEEEccccC----CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcE-
Confidence            3   3566779984    6778999864  66 6665555544444332111 011123333   368899998  777 


Q ss_pred             EEeeccCCeEEEeeecccccc--cccccCCCCcEE----EeH---------------HHHHhhhccCCCcEEEEcc-cCc
Q psy682          168 LACGFWDNSFREPFTTMYLAL--QEGKFDHPNRLF----SSI---------------SLAWKNCQRDTSDVKVHTT-FGD  225 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l--~~~l~gH~d~Vi----aSt---------------~~lW~~SgS~Dgtvkl~~~-~G~  225 (330)
                      +++|+.|++||+ |++.+++.  ...+.+|...|.    ...               ..+   +||.||+|+||+. +++
T Consensus       116 l~s~s~d~~v~~-wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~---sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          116 LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             EEEEETTSEEEE-EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE---EEETTSCEEEEEEETTT
T ss_pred             EEEEECCCcEEE-EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE---EEcCCCcEEEEEEcCCC
Confidence            566778999999 99976532  456778988872    111               233   8999999999976 455


Q ss_pred             ----eeeecCCCCCCCCCcEEEeCCCc---cEEEEcc-CCeEEEEeeCC
Q psy682          226 ----LLRSLDPPSGFASPESVVMSREG---VIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       226 ----ll~tL~~h~~~~~v~~v~fS~dG---~~l~s~~-~~~~~~~s~nG  266 (330)
                          ++++|.+|.+  .|.+|+|+|+|   ++||+++ ++++++|.++.
T Consensus       192 ~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          192 QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ceEEEEEEecCCCC--ceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                7889999999  99999999995   8999985 88999998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=2.8e-22  Score=187.24  Aligned_cols=236  Identities=13%  Similarity=0.061  Sum_probs=165.5

Q ss_pred             CcccCCCcEEEeecccccccceee-------------cCCCceeEEEeCC-CCCcCcceeeee-----------------
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP-------------SCDSSVRSLALSH-DQKYSPMMFSTV-----------------   49 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~-------------gH~~~V~svafSp-dg~~~~l~~~~~-----------------   49 (330)
                      |+|+.||+|++|++.+++....+.             +|...|.+++|+| ++++    +.++                 
T Consensus        60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM----FTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC----EEEEETTSEEEEEETTTTEEE
T ss_pred             EEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE----EEEEeCCCeEEEeeCCCCccc
Confidence            578999999999999988877775             6999999999999 5555    2222                 


Q ss_pred             ----cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC
Q psy682           50 ----LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD  124 (330)
Q Consensus        50 ----~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D  124 (330)
                          +...+..+.|+|.++              +....++++.++.|++|+..... +....+|.    ..+.++.|+||
T Consensus       136 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~v~~~~~~~~  197 (408)
T 4a11_B          136 DVFNFEETVYSHHMSPVST--------------KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR----QEILAVSWSPR  197 (408)
T ss_dssp             EEEECSSCEEEEEECSSCS--------------SCCEEEEEESSSSEEEEESSSSCCCEEECCCC----SCEEEEEECSS
T ss_pred             eeccCCCceeeeEeecCCC--------------CCcEEEEEcCCCeEEEEeCCCcceeeeecCCC----CcEEEEEECCC
Confidence                223333344443222              22345778888899999987554 45555786    46778999999


Q ss_pred             Cc--eeccCCCCCCCcceeccCCCC--cc------------------ceeeeeeEEEEecCCCeEEEeeccCCeEEEeee
Q psy682          125 PI--LTHPTSNNNAPVPKRHLGDNF--SQ------------------KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFT  182 (330)
Q Consensus       125 ~~--l~~~s~~~~~~~~~~~l~~~~--~~------------------~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~  182 (330)
                      +.  +++++.++.  +..+.+...-  ..                  .......+++|+||+++|++ |+.|++|++ |+
T Consensus       198 ~~~ll~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~v-wd  273 (408)
T 4a11_B          198 YDYILATASADSR--VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT-VGTDNRMRL-WN  273 (408)
T ss_dssp             CTTEEEEEETTSC--EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE-EETTSCEEE-EE
T ss_pred             CCcEEEEEcCCCc--EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE-ecCCCeEEE-EE
Confidence            97  444334333  3344332110  00                  01122358889999999555 557999999 99


Q ss_pred             cccccccccccCCCCcE--------EEe---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccE
Q psy682          183 TMYLALQEGKFDHPNRL--------FSS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI  250 (330)
Q Consensus       183 ~~~g~l~~~l~gH~d~V--------iaS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~  250 (330)
                      +.+++......++....        ...   ...+   .++.||+|++|+. +|++++++.+|.+  .|.+++|+|||+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~  348 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV---FVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCCVFQSNFQE  348 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE---EEEETTEEEEEETTTCCEEEEECCCSS--CEEEEEEETTTTE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEE---EEecCCEEEEEECcCCcceeeeccCCC--eEEEEEEcCCCCE
Confidence            99888766665543221        111   1111   5678999999975 7999999999999  9999999999999


Q ss_pred             EEEcc-CCeEEEEeeCCc
Q psy682          251 VVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       251 l~s~~-~~~~~~~s~nG~  267 (330)
                      ||+++ ++.++.|.++..
T Consensus       349 l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          349 LYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             EEEEETTSCEEEEEECC-
T ss_pred             EEEECCCCeEEEEeCCCC
Confidence            99995 889999987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=1e-22  Score=185.29  Aligned_cols=231  Identities=16%  Similarity=0.139  Sum_probs=165.0

Q ss_pred             CcccCCCcEEEeecccccccce---ee--cCCCceeEEEeCCCCCc------------------C--cceeeeecCccEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA---FP--SCDSSVRSLALSHDQKY------------------S--PMMFSTVLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t---l~--gH~~~V~svafSpdg~~------------------~--~l~~~~~~~d~~~   55 (330)
                      |+|+ ||+|++|++.+++....   +.  +|...|.+++|+|||+.                  .  .......|...+.
T Consensus        67 ~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  145 (337)
T 1gxr_A           67 YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             EEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred             EEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE
Confidence            3566 99999999987764433   33  89999999999999986                  0  1122346677778


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN  133 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~  133 (330)
                      .+.|+|+++.+                 ++++.++.|++|+..... .....+|.    ..+.++.|+||+. +++++.+
T Consensus       146 ~~~~~~~~~~l-----------------~~~~~dg~v~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          146 ALAISPDSKVC-----------------FSCCSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             EEEECTTSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCEE-----------------EEEeCCCcEEEEeCCCCceeeeeeccc----CceEEEEECCCCCEEEEEecC
Confidence            88888888764                 677788899999987554 44555776    3677899999998 5543333


Q ss_pred             CCCCcceeccCCC-Ccccee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HH
Q psy682          134 NNAPVPKRHLGDN-FSQKLR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--IS  204 (330)
Q Consensus       134 ~~~~~~~~~l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~  204 (330)
                      +  .+..+.+... ....+.  ....+++++||+++|+ +|+.|+.|++ |++.+++.. .+.+|...|.    ..  ..
T Consensus       205 g--~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~i~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          205 N--TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA-VGMESSNVEV-LHVNKPDKY-QLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             S--EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE-EEETTSCEEE-EETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred             C--cEEEEECCCCceEeeecCCCceEEEEECCCCCEEE-EEcCCCcEEE-EECCCCCeE-EEcCCccceeEEEECCCCCE
Confidence            3  3334443221 001111  1125788999999954 5668999999 999877654 6778888872    21  33


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      .+   +++.||+|++|+. +|+.+..+ .|..  .|.+++|+|||+.|++++ ++.++.|.+
T Consensus       280 l~---~~~~dg~i~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          280 FV---STGKDNLLNAWRTPYGASIFQS-KESS--SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE---EEETTSEEEEEETTTCCEEEEE-ECSS--CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE---EecCCCcEEEEECCCCeEEEEe-cCCC--cEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            33   8999999999976 67777554 4556  899999999999999884 888999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=9.1e-23  Score=186.76  Aligned_cols=238  Identities=12%  Similarity=0.131  Sum_probs=162.8

Q ss_pred             cccCCCcEEEee----cccccccceeecCCCceeEEEeCCC-CCc-----------------------CcceeeeecCcc
Q psy682            2 SGGDKGIVEVWR----TFNLALLYAFPSCDSSVRSLALSHD-QKY-----------------------SPMMFSTVLDDV   53 (330)
Q Consensus         2 sgs~d~~V~lW~----~~~g~~l~tl~gH~~~V~svafSpd-g~~-----------------------~~l~~~~~~~d~   53 (330)
                      ||.+.|+..++-    .++.++..||+||.+.|++|+|+|+ +++                       .+...+.+|.+.
T Consensus         9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~   88 (340)
T 4aow_A            9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF   88 (340)
T ss_dssp             -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC
T ss_pred             cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC
Confidence            556667655542    2345677789999999999999998 454                       012234577888


Q ss_pred             EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccC
Q psy682           54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPT  131 (330)
Q Consensus        54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s  131 (330)
                      |..+.|+||++.+                 ++++.|+.|++|+.......... .+.    .......+++++. +++++
T Consensus        89 V~~~~~s~dg~~l-----------------~s~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~s~s  147 (340)
T 4aow_A           89 VSDVVISSDGQFA-----------------LSGSWDGTLRLWDLTTGTTTRRFVGHT----KDVLSVAFSSDNRQIVSGS  147 (340)
T ss_dssp             EEEEEECTTSSEE-----------------EEEETTSEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSSCEEEEE
T ss_pred             EEEEEECCCCCEE-----------------EEEcccccceEEeecccceeeeecCCC----CceeEEEEeecCccceeec
Confidence            8888888888864                 88889999999999766544333 332    3455677888888 55433


Q ss_pred             CCCCCCcceeccCCCCcc--ceeee---eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccccCCCCcE--EE-e
Q psy682          132 SNNNAPVPKRHLGDNFSQ--KLRVR---HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FS-S  202 (330)
Q Consensus       132 ~~~~~~~~~~~l~~~~~~--~~~~~---~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--ia-S  202 (330)
                      .++  .+..+.+......  ....+   ..+++|++++. .++++++.|++||+ |++.+++++..+.+|.+.|  ++ +
T Consensus       148 ~d~--~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i-~d~~~~~~~~~~~~h~~~v~~~~~s  224 (340)
T 4aow_A          148 RDK--TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV-WNLANCKLKTNHIGHTGYLNTVTVS  224 (340)
T ss_dssp             TTS--CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE-EETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCC--eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE-EECCCCceeeEecCCCCcEEEEEEC
Confidence            333  3333333221110  11111   24677887754 24667778999999 9999999999999999988  22 2


Q ss_pred             ---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCcee
Q psy682          203 ---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL  269 (330)
Q Consensus       203 ---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~l  269 (330)
                         ...+   +|+.||+|+||+. +++.++.+.++.   .|.+++|+|++.+++.+.++.+++|..++..+
T Consensus       225 ~~~~~l~---s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          225 PDGSLCA---SGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             TTSSEEE---EEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             CCCCEEE---EEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence               3333   8999999999976 688899998763   69999999999999999999999999877654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=8e-23  Score=198.19  Aligned_cols=229  Identities=14%  Similarity=0.097  Sum_probs=167.6

Q ss_pred             CcccCCCcEEEeeccc----------ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee
Q psy682            1 MSGGDKGIVEVWRTFN----------LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA   70 (330)
Q Consensus         1 asgs~d~~V~lW~~~~----------g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~   70 (330)
                      |+|+.||+|++|++.+          ++.+.++.+|...|.+++|+|++..                             
T Consensus       145 at~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-----------------------------  195 (430)
T 2xyi_A          145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-----------------------------  195 (430)
T ss_dssp             EEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-----------------------------
T ss_pred             EEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-----------------------------
Confidence            5788999999999986          6778888999999999999888763                             


Q ss_pred             ccceeccCCcEEEEEcCCcceEEEeCCCCCC--------cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcce
Q psy682           71 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        71 ~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~--------~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~  140 (330)
                                 .+++++.+++|++|+.+...        .....+|.    ..+.++.|+| ++. +++++.  +..+..
T Consensus       196 -----------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~l~s~~~--dg~i~i  258 (430)
T 2xyi_A          196 -----------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT----AVVEDVAWHLLHESLFGSVAD--DQKLMI  258 (430)
T ss_dssp             -----------EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS----SCEEEEEECSSCTTEEEEEET--TSEEEE
T ss_pred             -----------eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC----CCEeeeEEeCCCCCEEEEEeC--CCeEEE
Confidence                       25888999999999997632        23344776    3677899999 555 444333  333444


Q ss_pred             eccCCC----Cccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEE----Ee---HHH
Q psy682          141 RHLGDN----FSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLF----SS---ISL  205 (330)
Q Consensus       141 ~~l~~~----~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~Vi----aS---t~~  205 (330)
                      +.+...    ....+..+   ..+++|+|++++++++|+.|++|++ |++.+ ++.+..+.+|...|.    ..   .+.
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~v-wd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEE-EETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEE-EeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence            544322    22233333   2689999999987888889999999 99987 567888889999882    22   334


Q ss_pred             HHhhhccCCCcEEEEcccC---------------ceeeecCCCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeCCce
Q psy682          206 AWKNCQRDTSDVKVHTTFG---------------DLLRSLDPPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMNGNR  268 (330)
Q Consensus       206 lW~~SgS~Dgtvkl~~~~G---------------~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~nG~~  268 (330)
                      +   +|+.||+|+||+...               +++..+.+|.+  .|+.++|+|+|. +||+++ ++.+++|.++...
T Consensus       338 ~---s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          338 A---SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             E---EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             E---EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            4   899999999998743               88999999988  999999999999 888874 8899999998776


Q ss_pred             eeeccCccccccc
Q psy682          269 LRHESHNDNLQEL  281 (330)
Q Consensus       269 las~~~~~dVkEL  281 (330)
                      +.....+....||
T Consensus       413 ~~~~~~~~~~~e~  425 (430)
T 2xyi_A          413 YNDEEPEIPASEL  425 (430)
T ss_dssp             HCC----------
T ss_pred             ccCCCccCChhhc
Confidence            6654444333344

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=6.9e-23  Score=188.59  Aligned_cols=234  Identities=12%  Similarity=0.062  Sum_probs=164.4

Q ss_pred             cccCCCcEEEeecccccccceeec-----CCCceeEEEeCCCCC----c------------------CcceeeeecCccE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPS-----CDSSVRSLALSHDQK----Y------------------SPMMFSTVLDDVC   54 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~g-----H~~~V~svafSpdg~----~------------------~~l~~~~~~~d~~   54 (330)
                      +++.++.|++|++.+++.+..+..     |...|.+++|+|++.    +                  ..+..+.+|.+.|
T Consensus        39 ~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  118 (366)
T 3k26_A           39 ATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI  118 (366)
T ss_dssp             EEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE
T ss_pred             EECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcE
Confidence            345677999999998888888765     557899999999943    4                  2233355788889


Q ss_pred             EEEEeCC-CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC----CCCCCCCCCCCCCccccCCCc-ee
Q psy682           55 MSLKFPS-NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS----PSYAETPGSPPGNLPLTLDPI-LT  128 (330)
Q Consensus        55 ~~v~Fs~-~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~----~~h~~~~~~~~~~l~fs~D~~-l~  128 (330)
                      ..++|+| ++..+                 ++++.|++|++|+.........    .+|.    ..+.++.|+||+. ++
T Consensus       119 ~~~~~~~~~~~~l-----------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~  177 (366)
T 3k26_A          119 NELKFHPRDPNLL-----------------LSVSKDHALRLWNIQTDTLVAIFGGVEGHR----DEVLSADYDLLGEKIM  177 (366)
T ss_dssp             EEEEECSSCTTEE-----------------EEEETTSCEEEEETTTTEEEEEECSTTSCS----SCEEEEEECTTSSEEE
T ss_pred             EEEEECCCCCCEE-----------------EEEeCCCeEEEEEeecCeEEEEeccccccc----CceeEEEECCCCCEEE
Confidence            9999999 77764                 7888899999999976553333    4676    4677899999998 55


Q ss_pred             ccCCCCCCCcceeccCCC-Cccc-------------------------------eeeeeeEEEEecCCCeEEEeeccCCe
Q psy682          129 HPTSNNNAPVPKRHLGDN-FSQK-------------------------------LRVRHNCFVTTVDSRFLLACGFWDNS  176 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~~-~~~~-------------------------------~~~~~~~~~~spDg~~i~asg~~D~t  176 (330)
                      +++.++  .+..+.+... ....                               ......+++++  +++ +++++.|++
T Consensus       178 ~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~~~~d~~  252 (366)
T 3k26_A          178 SCGMDH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL-ILSKSCENA  252 (366)
T ss_dssp             EEETTS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE-EEEECSSSE
T ss_pred             EecCCC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE-EEEEecCCE
Confidence            534433  3344443211 0000                               11112477777  667 556668999


Q ss_pred             EEEeeecccccc--------------cccccCCCCcE----EEe----HHHHHhhhccCCCcEEEEccc-Cc----eeee
Q psy682          177 FREPFTTMYLAL--------------QEGKFDHPNRL----FSS----ISLAWKNCQRDTSDVKVHTTF-GD----LLRS  229 (330)
Q Consensus       177 irl~w~~~~g~l--------------~~~l~gH~d~V----iaS----t~~lW~~SgS~Dgtvkl~~~~-G~----ll~t  229 (330)
                      |++ |++.+++.              +..+.+|...|    +..    ...+   +|+.||+|++|+.. |+    .+.+
T Consensus       253 i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          253 IVC-WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA---LGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             EEE-EEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE---EECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             EEE-EeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE---EEecCCcEEEEECCCCCCccccceE
Confidence            999 99977643              55666666554    121    2223   89999999999874 54    5558


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      +.+|.....|.+++|+|||+.||+++ ++.+++|.++
T Consensus       329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99983222899999999999999995 8899999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1.1e-22  Score=196.48  Aligned_cols=236  Identities=13%  Similarity=0.141  Sum_probs=156.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCC--------CCc--------CcceeeeecCccEEEEEeCCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD--------QKY--------SPMMFSTVLDDVCMSLKFPSNSP   64 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd--------g~~--------~~l~~~~~~~d~~~~v~Fs~~~~   64 (330)
                      |+|+.||+|++|++.+|+.+.++.+|.+.|++++|+++        |.+        ..+....+|...|..+.|+  +.
T Consensus       133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~  210 (445)
T 2ovr_B          133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK  210 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence            57899999999999999999999999999999999852        111        1111222444444444442  12


Q ss_pred             eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec
Q psy682           65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH  142 (330)
Q Consensus        65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~  142 (330)
                                       ..++++.|++|++|+..... +....+|..    .+.++.+  |+. +++++.++...++...
T Consensus       211 -----------------~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~--~~~~l~~~~~dg~i~iwd~~  267 (445)
T 2ovr_B          211 -----------------RVVSGSRDATLRVWDIETGQCLHVLMGHVA----AVRCVQY--DGRRVVSGAYDFMVKVWDPE  267 (445)
T ss_dssp             -----------------EEEEEETTSEEEEEESSSCCEEEEEECCSS----CEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred             -----------------EEEEEeCCCEEEEEECCCCcEEEEEcCCcc----cEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence                             24777788889999986544 444457763    5556777  666 5554444433333222


Q ss_pred             cCCCCccceeeeee-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHH
Q psy682          143 LGDNFSQKLRVRHN-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAW  207 (330)
Q Consensus       143 l~~~~~~~~~~~~~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW  207 (330)
                      .+.. ..++..+.. ..++..|++++ ++|+.|++|++ |++.+++++..+.+|...+         +++     ++++|
T Consensus       268 ~~~~-~~~~~~~~~~v~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw  344 (445)
T 2ovr_B          268 TETC-LHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRV-WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW  344 (445)
T ss_dssp             GTEE-EEEECCCSSCEEEEEECSSEE-EEEETTSCEEE-EETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCcE-eEEecCCCCceEEEEECCCEE-EEEeCCCeEEE-EECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence            2111 122333321 22233388874 44557888998 9988888888888888776         222     66666


Q ss_pred             hh------------------------------hccCCCcEEEEcc-cCceeeec-----CCCCCCCCCcEEEeCCCccEE
Q psy682          208 KN------------------------------CQRDTSDVKVHTT-FGDLLRSL-----DPPSGFASPESVVMSREGVIV  251 (330)
Q Consensus       208 ~~------------------------------SgS~Dgtvkl~~~-~G~ll~tL-----~~h~~~~~v~~v~fS~dG~~l  251 (330)
                      +.                              +|+.||+|++|+. +|++++++     .+|.+  .|.+++|+|+|..+
T Consensus       345 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVC  422 (445)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEE
T ss_pred             ECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc--eEEEEEecCCEEEE
Confidence            65                              8889999999975 68888888     45666  89999999999999


Q ss_pred             EEcc-CCe----EEEEeeCC
Q psy682          252 VNYE-RGH----IAAFTMNG  266 (330)
Q Consensus       252 ~s~~-~~~----~~~~s~nG  266 (330)
                      |+++ +++    +..|+.+.
T Consensus       423 a~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          423 AVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEECSSSSSCCEEEEEECCC
T ss_pred             EEcccCCCCccEEEEEECCC
Confidence            8885 554    77776554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.88  E-value=2.9e-22  Score=205.59  Aligned_cols=224  Identities=10%  Similarity=0.082  Sum_probs=167.5

Q ss_pred             cceeecCCCceeEEEeCCCCC-c---------------C--------cceeeeecCccEEEEEeCCCCCeeEeeecccee
Q psy682           20 LYAFPSCDSSVRSLALSHDQK-Y---------------S--------PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVT   75 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~-~---------------~--------~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~   75 (330)
                      ...|++|.+.|++|+|+|++. +               .        ....+.+|...|..+.|+|+++.+         
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l---------  445 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA---------  445 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE---------
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE---------
Confidence            346899999999999999864 3               0        012345788888889999988875         


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc----c
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS----Q  149 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~----~  149 (330)
                              +|++.|++|++|+...+. ...+.+|.+    .+.++.|+||+. +++++.++..  ..|.+.....    .
T Consensus       446 --------~sgs~Dg~v~vwd~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~D~~i--~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          446 --------LSGSWDGELRLWDLAAGVSTRRFVGHTK----DVLSVAFSLDNRQIVSASRDRTI--KLWNTLGECKYTISE  511 (694)
T ss_dssp             --------EEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCE--EEECTTSCEEEEECS
T ss_pred             --------EEEeCCCcEEEEECCCCcceeEEeCCCC----CEEEEEEeCCCCEEEEEeCCCEE--EEEECCCCcceeecc
Confidence                    888999999999987554 455568974    677899999998 6654444433  3444322110    0


Q ss_pred             ceeee---eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHHHhhhccCCCcEEE
Q psy682          150 KLRVR---HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKV  219 (330)
Q Consensus       150 ~~~~~---~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl  219 (330)
                      ....|   ..|++|+|++. .++++|+.|++||+ |++.++++...+.+|...|.  + +   ...+   |||.||+|+|
T Consensus       512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v-wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~---sg~~Dg~i~i  587 (694)
T 3dm0_A          512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV-WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA---SGGKDGVVLL  587 (694)
T ss_dssp             STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSEEE---EEETTSBCEE
T ss_pred             CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE-EECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE---EEeCCCeEEE
Confidence            11122   36889999973 24667779999999 99999999999999999882  1 2   3334   8999999999


Q ss_pred             Ecc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCce-eeecc
Q psy682          220 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR-LRHES  273 (330)
Q Consensus       220 ~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~-las~~  273 (330)
                      |+. +|+.++++..+ .  .|.+++|||+|.+|++++++.+++|...... +..+.
T Consensus       588 wd~~~~~~~~~~~~~-~--~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          588 WDLAEGKKLYSLEAN-S--VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             EETTTTEEEECCBCS-S--CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             EECCCCceEEEecCC-C--cEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence            976 79999998865 3  6999999999999999988889999876543 34443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.88  E-value=1.2e-21  Score=179.86  Aligned_cols=231  Identities=10%  Similarity=0.056  Sum_probs=164.4

Q ss_pred             ccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      .++..++.||...|++++|+|||+.                  .......+|...|..++|+|+++.+            
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l------------   80 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL------------   80 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE------------
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE------------
Confidence            4567789999999999999999987                  1122345788888999999998875            


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceeeee
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH  155 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~  155 (330)
                           ++++.|++|++|+.+... +....+|.    ..+.++.|+||+. +++++.++.  +..|.+.. .....+..+.
T Consensus        81 -----~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~  149 (312)
T 4ery_A           81 -----VSASDDKTLKIWDVSSGKCLKTLKGHS----NYVFCCNFNPQSNLIVSGSFDES--VRIWDVKTGKCLKTLPAHS  149 (312)
T ss_dssp             -----EEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETTSC--EEEEETTTCCEEEEECCCS
T ss_pred             -----EEECCCCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCEEEEEecCCC
Confidence                 788889999999987655 44555886    4677899999998 555444443  34444321 1122333332


Q ss_pred             ---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC-CCCcE--EE-e---HHHHHhhhccCCCcEEEEcc-cC
Q psy682          156 ---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRL--FS-S---ISLAWKNCQRDTSDVKVHTT-FG  224 (330)
Q Consensus       156 ---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~V--ia-S---t~~lW~~SgS~Dgtvkl~~~-~G  224 (330)
                         .+++++||++++ ++|+.|++|++ |++.+++.+..+.. |...+  ++ +   ...+   +|+.||+|++|+. +|
T Consensus       150 ~~v~~~~~~~~~~~l-~~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          150 DPVSAVHFNRDGSLI-VSSSYDGLCRI-WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL---AATLDNTLKLWDYSKG  224 (312)
T ss_dssp             SCEEEEEECTTSSEE-EEEETTSCEEE-EETTTCCEEEEECCSSCCCEEEEEECTTSSEEE---EEETTTEEEEEETTTT
T ss_pred             CcEEEEEEcCCCCEE-EEEeCCCcEEE-EECCCCceeeEEeccCCCceEEEEECCCCCEEE---EEcCCCeEEEEECCCC
Confidence               578899999984 55668999999 99998887766644 44444  11 1   2233   8999999999976 79


Q ss_pred             ceeeecCCCCCCCCCcEEEe-CCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          225 DLLRSLDPPSGFASPESVVM-SREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       225 ~ll~tL~~h~~~~~v~~v~f-S~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      +.++++.+|..........| .++|+.|++++ ++.+++|.++ ++.+..+..|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            99999999977212222334 47899999985 8899999875 5555666544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5e-23  Score=197.31  Aligned_cols=243  Identities=10%  Similarity=0.078  Sum_probs=163.3

Q ss_pred             CcccCCCcEEEeeccc---ccccc-eee-cCCCceeEEEeCCCCCcCcceeeeecCc-----------------------
Q psy682            1 MSGGDKGIVEVWRTFN---LALLY-AFP-SCDSSVRSLALSHDQKYSPMMFSTVLDD-----------------------   52 (330)
Q Consensus         1 asgs~d~~V~lW~~~~---g~~l~-tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d-----------------------   52 (330)
                      |||+.||+|+||++.+   ++... .+. +|...|++|+|+|+++.    +..+..|                       
T Consensus        80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  155 (437)
T 3gre_A           80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDA----FAVSSKDGQIIVLKVNHYQQESEVKFLNCE  155 (437)
T ss_dssp             EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSE----EEEEETTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCE----EEEEeCCCEEEEEEeccccCCceeeccccc
Confidence            5899999999999977   44221 333 69999999999999887    3333332                       


Q ss_pred             cEEEEEeCCC---CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCC--CCCCCCCCCCCccccCCCc
Q psy682           53 VCMSLKFPSN---SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPS--YAETPGSPPGNLPLTLDPI  126 (330)
Q Consensus        53 ~~~~v~Fs~~---~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~--h~~~~~~~~~~l~fs~D~~  126 (330)
                      .+..+.|+|+   ..++.+.    ....+++-.+++++.+++|++|+..... +.++.+  |.    ..+.++.|+||+.
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~  227 (437)
T 3gre_A          156 CIRKINLKNFGKNEYAVRMR----AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH----GAVSSICIDEECC  227 (437)
T ss_dssp             EEEEEEGGGGSSCCCEEEEE----EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGG----CCEEEEEECTTSC
T ss_pred             eeEEEEccCcccccCceEEE----EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC----CceEEEEECCCCC
Confidence            2233334331   1111111    0133556778999999999999997655 344445  65    4678899999999


Q ss_pred             -eeccCCCCCCCcceeccCCCCcccee----eeeeEE----EEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC
Q psy682          127 -LTHPTSNNNAPVPKRHLGDNFSQKLR----VRHNCF----VTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN  197 (330)
Q Consensus       127 -l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~~~----~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d  197 (330)
                       +++++.++...+|..+.+... .++.    ....++    +|+||+++ +++|+.|++|++ |++.+++.++.+.+|..
T Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~s~~~~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          228 VLILGTTRGIIDIWDIRFNVLI-RSWSFGDHAPITHVEVCQFYGKNSVI-VVGGSSKTFLTI-WNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             EEEEEETTSCEEEEETTTTEEE-EEEBCTTCEEEEEEEECTTTCTTEEE-EEEESTTEEEEE-EETTTTEEEEEEESSSS
T ss_pred             EEEEEcCCCeEEEEEcCCccEE-EEEecCCCCceEEEEeccccCCCccE-EEEEcCCCcEEE-EEcCCCcEEEEEEcCCC
Confidence             665444443333322222211 1121    112456    44567877 666778999999 99999998888888765


Q ss_pred             cEE-----------------------------Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCC-------------
Q psy682          198 RLF-----------------------------SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP-------------  232 (330)
Q Consensus       198 ~Vi-----------------------------aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~-------------  232 (330)
                      .+.                             .+  ...+   +|+.||+|++|+. +|+.++++.+             
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~---s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (437)
T 3gre_A          305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILL---TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV  381 (437)
T ss_dssp             CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEE---EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEE
T ss_pred             CCccceecccccccccceecccccCCceEEEEECCceEEE---ecCCCCeEEEEECCCcccceEEecccccCceEEEEEe
Confidence            441                             00  1122   8999999999976 7888888887             


Q ss_pred             ------------------------CCCCCCCcEEEeCCC--ccEEEEcc-CCeEEEEe
Q psy682          233 ------------------------PSGFASPESVVMSRE--GVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       233 ------------------------h~~~~~v~~v~fS~d--G~~l~s~~-~~~~~~~s  263 (330)
                                              |.+  .|++|+|+++  +.+||+|+ +|.|++|+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~--~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          382 TANLTMLLRKMKRTSTHSVDDSLYHHD--IINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ETTEEEEEEECC-------------CC--CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ecceEEEEEecccccccccCccccccc--ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                    566  8999999988  88999985 88888884

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.9e-22  Score=186.49  Aligned_cols=211  Identities=12%  Similarity=0.070  Sum_probs=155.6

Q ss_pred             CcccCCCcEEEeecc--cccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |+|+.||+|++|++.  +++.+.++.+|...|++++|+|+  +++                                   
T Consensus        27 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-----------------------------------   71 (379)
T 3jrp_A           27 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-----------------------------------   71 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-----------------------------------
T ss_pred             EEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCE-----------------------------------
Confidence            578899999999998  67888899999999999999986  554                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC--C-
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN--F-  147 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~--~-  147 (330)
                            +++++.|++|++|+.+.+   ......+|.    ..+.++.|+||  +. +++++.++.  +..+.+...  . 
T Consensus        72 ------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~  139 (379)
T 3jrp_A           72 ------LASCSYDGKVLIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTS  139 (379)
T ss_dssp             ------EEEEETTSCEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSE--EEEEECCTTSCCC
T ss_pred             ------EEEeccCCEEEEEEcCCCceeEeeeecCCC----cceEEEEeCCCCCCCEEEEecCCCc--EEEEecCCCCcee
Confidence                  478888899999999766   355556776    46778999999  76 555444443  334443222  1 


Q ss_pred             ccceeee---eeEEEEec-------------CCCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEE----EeH
Q psy682          148 SQKLRVR---HNCFVTTV-------------DSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLF----SSI  203 (330)
Q Consensus       148 ~~~~~~~---~~~~~~sp-------------Dg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Vi----aSt  203 (330)
                      ...+..+   ..+++++|             |+++ +++|+.|++|++ |++.+++    +...+.+|...|.    ...
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCE-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCE-EEEEeCCCeEEE-EEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence            1112222   25888999             6888 555668999999 9987654    5678889999882    212


Q ss_pred             -----HHHHhhhccCCCcEEEEccc-Cc-----eeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682          204 -----SLAWKNCQRDTSDVKVHTTF-GD-----LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       204 -----~~lW~~SgS~Dgtvkl~~~~-G~-----ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n  265 (330)
                           ..+   +|+.||+|+||+.. |+     .+....+|..  .|.+++|+|||+.||++ .++.++.|..+
T Consensus       218 ~~~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          218 VLLRSYLA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CSSSEEEE---EEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCCeEE---EEeCCCEEEEEeCCCCCccceeeeeccccCCC--cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence                 233   89999999999874 32     2233334666  89999999999999987 58899999876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.88  E-value=7.7e-23  Score=193.83  Aligned_cols=235  Identities=6%  Similarity=-0.023  Sum_probs=169.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+++....+.+| ..+...+|+|||++                  .......+|.+.|..++|+|+
T Consensus        72 ~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  150 (420)
T 3vl1_A           72 YKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS  150 (420)
T ss_dssp             EEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT
T ss_pred             EEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC
Confidence            47889999999999999999999888 66667789999987                  111223478889999999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      ++.+                 ++++.|++|++|+..... +..+.+|.    ..+.++.|+||+. +++++.++..  ..
T Consensus       151 ~~~l-----------------~s~s~d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d~~v--~i  207 (420)
T 3vl1_A          151 GEAL-----------------ISSSQDMQLKIWSVKDGSNPRTLIGHR----ATVTDIAIIDRGRNVLSASLDGTI--RL  207 (420)
T ss_dssp             SSEE-----------------EEEETTSEEEEEETTTCCCCEEEECCS----SCEEEEEEETTTTEEEEEETTSCE--EE
T ss_pred             CCEE-----------------EEEeCCCeEEEEeCCCCcCceEEcCCC----CcEEEEEEcCCCCEEEEEcCCCcE--EE
Confidence            9975                 788889999999987544 55556887    4677899999998 6654444433  33


Q ss_pred             eccCCC-Cccceee---------------------------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          141 RHLGDN-FSQKLRV---------------------------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       141 ~~l~~~-~~~~~~~---------------------------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      |.+... ....+..                           ...+++|+|||++ +++|+.|++|++ |++.+++....+
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i-~d~~~~~~~~~~  285 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITV-HNVFSKEQTIQL  285 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEE-EETTTCCEEEEE
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEE-EECCCCceeEEc
Confidence            433211 1111111                           1123456899988 555668999999 999888765555


Q ss_pred             c-CCCCcEE----Ee--H-HHHHhhhccCCCcEEEEcc-cC-ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEE
Q psy682          193 F-DHPNRLF----SS--I-SLAWKNCQRDTSDVKVHTT-FG-DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAA  261 (330)
Q Consensus       193 ~-gH~d~Vi----aS--t-~~lW~~SgS~Dgtvkl~~~-~G-~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~  261 (330)
                      . +|...|.    ..  . ..+   +|+.||+|++|+. +| +++.++.+|.+ ..|.++ ++++|+.|++++ ++.+++
T Consensus       286 ~~~~~~~v~~~~~~~~~~~~l~---~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          286 PSKFTCSCNSLTVDGNNANYIY---AGYENGMLAQWDLRSPECPVGEFLINEG-TPINNV-YFAAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             CCTTSSCEEEEEECSSCTTEEE---EEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEE-EEETTEEEEEETTTEEEEE
T ss_pred             ccccCCCceeEEEeCCCCCEEE---EEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEE-EeCCCCEEEEecCCccEEE
Confidence            4 5777772    22  2 444   8999999999986 45 45888888555 277777 456888888885 888999


Q ss_pred             EeeCC
Q psy682          262 FTMNG  266 (330)
Q Consensus       262 ~s~nG  266 (330)
                      |.+..
T Consensus       361 w~~~~  365 (420)
T 3vl1_A          361 DIISD  365 (420)
T ss_dssp             EEECC
T ss_pred             EeccC
Confidence            98764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=3.5e-22  Score=197.33  Aligned_cols=235  Identities=10%  Similarity=0.065  Sum_probs=172.0

Q ss_pred             CcccCCCcEEEeecccc--------cccceeecCCCceeEEEeCCCCCc--------------------CcceeeeecCc
Q psy682            1 MSGGDKGIVEVWRTFNL--------ALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDD   52 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g--------~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d   52 (330)
                      |+|+.||+|++|++.+|        +.+.++.+|...|.+++|+|||+.                    ..+....+|.+
T Consensus        82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  161 (615)
T 1pgu_A           82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  161 (615)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCc
Confidence            57889999999999755        788899999999999999999986                    11223447888


Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCC-Cc-eec
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLD-PI-LTH  129 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D-~~-l~~  129 (330)
                      .+..+.|+|+++.+                .++++.+++|++|+..... +..+.+|.+. ...+.++.|+|| +. +++
T Consensus       162 ~v~~~~~~~~~~~~----------------l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          162 RINACHLKQSRPMR----------------SMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-GSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             CEEEEEECSSSSCE----------------EEEEETTTEEEEEETTTBEEEEEECSSSCT-TCCEEEEEECSTTCCEEEE
T ss_pred             cEEEEEECCCCCcE----------------EEEEeCCCcEEEEeCCCcceeeeecccCCC-CceEEEEEECCCCCCEEEE
Confidence            99999999999832                4778889999999986554 4455577630 015778999999 88 555


Q ss_pred             cCCCCCCCcceeccCCCCccce-e---ee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC----Cc
Q psy682          130 PTSNNNAPVPKRHLGDNFSQKL-R---VR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP----NR  198 (330)
Q Consensus       130 ~s~~~~~~~~~~~l~~~~~~~~-~---~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~----d~  198 (330)
                      ++.++...++....+.. ...+ .   .+   ..+++|+ |+++|++ ++.|++|++ |++.+++++..+..|.    ..
T Consensus       225 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~  300 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DSQKFAT-VGADATIRV-WDVTTSKCVQKWTLDKQQLGNQ  300 (615)
T ss_dssp             EETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SSSEEEE-EETTSEEEE-EETTTTEEEEEEECCTTCGGGC
T ss_pred             EeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CCCEEEE-EcCCCcEEE-EECCCCcEEEEEcCCCCcccCc
Confidence            44444333332222221 1222 2   22   2578889 9998555 557999999 9999999988888873    33


Q ss_pred             EE---Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682          199 LF---SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       199 Vi---aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n  265 (330)
                      +.   .+  ...+   +|+.||+|++|+. +|+.++++.+|.+  .|.+++| |+   ++++ .++.+..|..+
T Consensus       301 ~~~~~~~~~~~l~---~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          301 QVGVVATGNGRII---SLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEEEEEEETTEEE---EEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             eeEEEeCCCCeEE---EEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            31   11  2233   8999999999976 5899999999998  9999999 88   5555 58888888765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=4.4e-22  Score=192.32  Aligned_cols=229  Identities=14%  Similarity=0.149  Sum_probs=160.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      |+|+.||+|++|++.+++.+.++.+|.+.|++++|  |+++                  ..+....+|.+.|..+.|+++
T Consensus       147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  224 (435)
T 1p22_A          147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG  224 (435)
T ss_dssp             EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC
Confidence            57899999999999999999999999999999999  5554                  111122344444455554322


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc----ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS----IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP  137 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~----~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~  137 (330)
                                         .+++++.|++|++|+......    ....+|..    .+.++.+  |+. +++++.++.. 
T Consensus       225 -------------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~~~~--~~~~l~s~~~dg~i-  278 (435)
T 1p22_A          225 -------------------MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDF--DDKYIVSASGDRTI-  278 (435)
T ss_dssp             -------------------EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS----CEEEEEE--ETTEEEEEETTSEE-
T ss_pred             -------------------EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC----cEEEEEe--CCCEEEEEeCCCeE-
Confidence                               347888899999999976553    34457864    5566777  666 5554444433 


Q ss_pred             cceeccCC-CCccceeeeee-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--Ee--HHHHHhhhc
Q psy682          138 VPKRHLGD-NFSQKLRVRHN-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--SS--ISLAWKNCQ  211 (330)
Q Consensus       138 ~~~~~l~~-~~~~~~~~~~~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--aS--t~~lW~~Sg  211 (330)
                       ..+.+.. ....++..+.. ..++..++++ +++|+.|++|++ |++.+|+++..+.+|.+.|.  +-  ...+   +|
T Consensus       279 -~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~g~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~~~~~l~---sg  352 (435)
T 1p22_A          279 -KVWNTSTCEFVRTLNGHKRGIACLQYRDRL-VVSGSSDNTIRL-WDIECGACLRVLEGHEELVRCIRFDNKRIV---SG  352 (435)
T ss_dssp             -EEEETTTCCEEEEEECCSSCEEEEEEETTE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEECCSSEEE---EE
T ss_pred             -EEEECCcCcEEEEEcCCCCcEEEEEeCCCE-EEEEeCCCeEEE-EECCCCCEEEEEeCCcCcEEEEEecCCEEE---EE
Confidence             3343321 12233443432 2223446777 555668999999 99999999999999999882  21  3333   89


Q ss_pred             cCCCcEEEEcc-cCc---------eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          212 RDTSDVKVHTT-FGD---------LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~---------ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      +.||+|++|+. +++         .++++.+|.+  .|.+++|  ||..|++++ ++.++.|..+..
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            99999999986 344         8999999999  9999999  888899986 889999997754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.87  E-value=3.6e-22  Score=190.34  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=166.6

Q ss_pred             CcccCCCcEEEeeccc-c---cccceeecCCCceeEEEeCC-CCCc----------------C---------cceeeeec
Q psy682            1 MSGGDKGIVEVWRTFN-L---ALLYAFPSCDSSVRSLALSH-DQKY----------------S---------PMMFSTVL   50 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g---~~l~tl~gH~~~V~svafSp-dg~~----------------~---------~l~~~~~~   50 (330)
                      ++|+.||.|++|++.+ |   +.+.++.+|.+.|++++|+| ++++                .         ++....+|
T Consensus        51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            3678999999999864 3   35667899999999999999 7766                1         23445578


Q ss_pred             CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccC--CCCCCCCCCCCCCccccCCCc-
Q psy682           51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQS--PSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~--~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                      .+.|..++|+|+++-                ++++++.|++|++|+...+. ..+.  .+|.    ..+.++.|+||+. 
T Consensus       131 ~~~v~~~~~~p~~~~----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQN----------------VLLSAGCDNVILVWDVGTGAAVLTLGPDVHP----DTIYSVDWSRDGAL  190 (402)
T ss_dssp             SSCEEEEEECSSBTT----------------EEEEEETTSCEEEEETTTTEEEEEECTTTCC----SCEEEEEECTTSSC
T ss_pred             CCeEEEEEECcCCCC----------------EEEEEcCCCEEEEEECCCCCccEEEecCCCC----CceEEEEECCCCCE
Confidence            888888888888742                24788889999999987655 3444  5676    4677899999998 


Q ss_pred             eeccCCCCCCCcceeccCCC-Cccce-eee----eeEEEEecCCCeEEEee---ccCCeEEEeeecccccc-cccc-cCC
Q psy682          127 LTHPTSNNNAPVPKRHLGDN-FSQKL-RVR----HNCFVTTVDSRFLLACG---FWDNSFREPFTTMYLAL-QEGK-FDH  195 (330)
Q Consensus       127 l~~~s~~~~~~~~~~~l~~~-~~~~~-~~~----~~~~~~spDg~~i~asg---~~D~tirl~w~~~~g~l-~~~l-~gH  195 (330)
                      +++++.++.  +..+.+... ....+ ..+    ..+++|+||+++ +++|   +.|++|++ |++.+++. +... .+|
T Consensus       191 l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~i-wd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          191 ICTSCRDKR--VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVAL-WDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             EEEEETTSE--EEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEE-EETTBCSSCSEEEECCC
T ss_pred             EEEEecCCc--EEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEE-EcCccccCCceEEeccC
Confidence            555344333  334443221 11122 222    257889999987 5566   68999999 99987664 2222 245


Q ss_pred             CCcEE----Ee---HHHHHhhhccCCCcEEEEcc-cCce-eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          196 PNRLF----SS---ISLAWKNCQRDTSDVKVHTT-FGDL-LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       196 ~d~Vi----aS---t~~lW~~SgS~Dgtvkl~~~-~G~l-l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                      ...|.    ..   .+.+   +|+.||+|++|+. +++. ++.|..|.....|.+++|+|||.++++++ +.++.|....
T Consensus       267 ~~~v~~~~~s~~~~~l~~---~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~-~~~~~~~l~~  342 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYL---CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC-EIARFYKLHE  342 (402)
T ss_dssp             CSSCEEEEEETTTTEEEE---EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT-EEEEEEEEET
T ss_pred             CCceeEEEEcCCCCEEEE---EEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecc-eeEEEEEcCC
Confidence            55542    21   2222   7889999999976 4552 66666554223899999999999998754 4888888766


Q ss_pred             cee
Q psy682          267 NRL  269 (330)
Q Consensus       267 ~~l  269 (330)
                      ..+
T Consensus       343 ~~~  345 (402)
T 2aq5_A          343 RKC  345 (402)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.87  E-value=1.7e-22  Score=188.09  Aligned_cols=193  Identities=11%  Similarity=0.056  Sum_probs=136.1

Q ss_pred             eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC
Q psy682           22 AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA  101 (330)
Q Consensus        22 tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~  101 (330)
                      ++.+|.+.|++|+|+|||++                                         +||++.|++|++|+...+.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~-----------------------------------------lasgs~D~~v~lwd~~~~~   46 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTR-----------------------------------------LATCSSDRSVKIFDVRNGG   46 (316)
T ss_dssp             ------CCEEEEEECGGGCE-----------------------------------------EEEEETTTEEEEEEEETTE
T ss_pred             ecccccCeEEEeeEcCCCCE-----------------------------------------EEEEeCCCeEEEEEecCCC
Confidence            45788888888888888776                                         4888999999999986542


Q ss_pred             ---cccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCC-CCccceeeee---eEEEEecC--CCeEEE
Q psy682          102 ---SIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGD-NFSQKLRVRH---NCFVTTVD--SRFLLA  169 (330)
Q Consensus       102 ---~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~---~~~~~spD--g~~i~a  169 (330)
                         +.++.+|.+    ++.++.|+++  +. +++++.++...+|....+. .....+..|.   .+++|+||  |++ ++
T Consensus        47 ~~~~~~l~gH~~----~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~-la  121 (316)
T 3bg1_A           47 QILIADLRGHEG----PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLI-LA  121 (316)
T ss_dssp             EEEEEEEECCSS----CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSC-EE
T ss_pred             cEEEEEEcCCCc----cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcE-EE
Confidence               455679974    6778999863  65 7765555544444322111 0111233332   58899998  767 67


Q ss_pred             eeccCCeEEEeeeccccc---ccccccCCCCcE----EEe-------------------HHHHHhhhccCCCcEEEEccc
Q psy682          170 CGFWDNSFREPFTTMYLA---LQEGKFDHPNRL----FSS-------------------ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       170 sg~~D~tirl~w~~~~g~---l~~~l~gH~d~V----iaS-------------------t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      +|+.|++||+ |++..+.   +...+.+|...|    +..                   ...+   +||.||+||||+.+
T Consensus       122 sgs~D~~i~l-wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          122 CGSSDGAISL-LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA---SGGCDNLIKLWKEE  197 (316)
T ss_dssp             EECSSSCEEE-EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE---CCBTTSBCCEEEEC
T ss_pred             EEcCCCCEEE-EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE---EecCCCeEEEEEeC
Confidence            7789999999 9997652   356778888766    211                   1223   89999999999875


Q ss_pred             -C---ceeeecCCCCCCCCCcEEEeCCCc----cEEEEcc-CCeEEEEeeCC
Q psy682          224 -G---DLLRSLDPPSGFASPESVVMSREG----VIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       224 -G---~ll~tL~~h~~~~~v~~v~fS~dG----~~l~s~~-~~~~~~~s~nG  266 (330)
                       +   +++++|.+|.+  .|++|+|+|+|    +.||+++ ++++++|..+.
T Consensus       198 ~~~~~~~~~~l~~h~~--~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          198 EDGQWKEEQKLEAHSD--WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             TTSCEEEEECCBCCSS--CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCccceeeecccCCC--ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence             3   47889999999  99999999997    8899985 88999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.1e-22  Score=205.01  Aligned_cols=208  Identities=11%  Similarity=0.007  Sum_probs=152.9

Q ss_pred             ecCCCceeEEEeCCCCCc----C---------cceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcc
Q psy682           24 PSCDSSVRSLALSHDQKY----S---------PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQF   90 (330)
Q Consensus        24 ~gH~~~V~svafSpdg~~----~---------~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~   90 (330)
                      +.-..||++|+|||||++    .         ......+|...|+.|+|+|+|                        .++
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------------------------~~~   67 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------------------------FEN   67 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------------------------CCC
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------------------------Ccc
Confidence            556799999999999999    1         111125788888999999988                        256


Q ss_pred             eEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceee-------eeeEEEEec
Q psy682           91 AINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRV-------RHNCFVTTV  162 (330)
Q Consensus        91 tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~sp  162 (330)
                      ++++|+.++....++ +|.    +.+.+++|||||+ +|+++.++...+|.++  . +...+..       ...+++|||
T Consensus        68 ~~~~~~~~~~~~~~~-~~~----~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~-~l~~l~~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           68 KLDFELAQQNGLLNS-QPV----CYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--K-MLTNLDSKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             TTTTSCCCSSCSSTT-SCS----CCEEEEEECSSSSCEEEEETTSCEEEEETT--E-EEEECCCSSCSTTTCEEEEEECS
T ss_pred             eEEEEeCCCceEeec-CCC----CcEEEEEECCCCCEEEEEeCCCcEEEEeCC--c-eeeeccCCCccccccEEEEEEcC
Confidence            677777766554443 444    5788999999999 7776666665555421  1 1111110       134889999


Q ss_pred             CCCeEEEeeccCCeEEEeeecccccc-------cccc----cCCCCcEE----Ee-HHHHHhhhccCCCcEEEEcccCce
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLAL-------QEGK----FDHPNRLF----SS-ISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~l-------~~~l----~gH~d~Vi----aS-t~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      ||++ +++|+.|++||+ |++.++++       ++++    .||.+.|.    .+ . .+   ++|.|++|++|+.+++.
T Consensus       140 DG~~-LAsgs~DGtVkI-Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-La---ass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          140 IESS-IVVGNEDGELQF-FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LV---AALSNNSVFSMTVSASS  213 (588)
T ss_dssp             SSSC-EEEEETTSEEEE-EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EE---EEETTCCEEEECCCSSS
T ss_pred             CCCE-EEEEcCCCEEEE-EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EE---EEeCCCeEEEEECCCCc
Confidence            9999 555668999999 99987764       4565    78889982    22 4 44   89999999999987655


Q ss_pred             e----eec-CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682          227 L----RSL-DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       227 l----~tL-~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~  273 (330)
                      +    ++| .+|..  .|.+|+||  |++||+++++++++|.++|..+....
T Consensus       214 ~~~~~~tL~~~h~~--~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          214 HQPVSRMIQNASRR--KITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             SCCCEEEEECCCSS--CCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEE
T ss_pred             cccceeeecccccC--cEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEE
Confidence            4    568 47777  89999999  79999998899999999988884444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=179.90  Aligned_cols=224  Identities=12%  Similarity=0.066  Sum_probs=152.6

Q ss_pred             CcccCCCcEEEeeccc-cccc-ceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEe--
Q psy682            1 MSGGDKGIVEVWRTFN-LALL-YAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKF--   59 (330)
Q Consensus         1 asgs~d~~V~lW~~~~-g~~l-~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~F--   59 (330)
                      |+|+.||+|++|++.+ ++.+ ..+.+|...|++++|+|||++                 ........|...+..+.|  
T Consensus        58 ~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  137 (368)
T 3mmy_A           58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK  137 (368)
T ss_dssp             EEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEe
Confidence            5789999999999987 5555 789999999999999999987                 001113356666666776  


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCc
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPV  138 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~  138 (330)
                      +|++..                 +++++.|++|++|+....... ....|.     ...++.+..+..+. ++.++  .+
T Consensus       138 ~~~~~~-----------------l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~--~i  192 (368)
T 3mmy_A          138 APNYSC-----------------VMTGSWDKTLKFWDTRSSNPMMVLQLPE-----RCYCADVIYPMAVV-ATAER--GL  192 (368)
T ss_dssp             CSSCEE-----------------EEEEETTSEEEEECSSCSSCSEEEECSS-----CEEEEEEETTEEEE-EEGGG--CE
T ss_pred             CCCCCE-----------------EEEccCCCcEEEEECCCCcEEEEEecCC-----CceEEEecCCeeEE-EeCCC--cE
Confidence            666665                 488888999999998655433 333332     34445555443322 22222  23


Q ss_pred             ceeccCCCCc------cceeeeeeEEEEecCCCe---EEEeeccCCeEEEeeecccc---cccccccCCCC---------
Q psy682          139 PKRHLGDNFS------QKLRVRHNCFVTTVDSRF---LLACGFWDNSFREPFTTMYL---ALQEGKFDHPN---------  197 (330)
Q Consensus       139 ~~~~l~~~~~------~~~~~~~~~~~~spDg~~---i~asg~~D~tirl~w~~~~g---~l~~~l~gH~d---------  197 (330)
                      ..+.+.....      ........++++.++++.   .+++|+.|++|++ |++..+   +....+.+|..         
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI-HYINPPNPAKDNFTFKCHRSNGTNTSAPQ  271 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE-EESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE-EecCCCCccccceeeeeeecccccccccc
Confidence            3333322110      001112246666665543   2445668999999 999876   66778888876         


Q ss_pred             ---cE--E--Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          198 ---RL--F--SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       198 ---~V--i--aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                         .|  +  ..  ...+   +|+.||+|+||+. +|++++++.+|.+  .|.+++|||||+.||+++
T Consensus       272 ~~~~v~~~~~sp~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          272 DIYAVNGIAFHPVHGTLA---TVGSDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             EECCEEEEEECTTTCCEE---EEETTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEEEE
T ss_pred             cccceEEEEEecCCCEEE---EEccCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEEEe
Confidence               34  1  11  2333   8999999999976 6999999999998  999999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=4e-21  Score=174.76  Aligned_cols=246  Identities=14%  Similarity=0.089  Sum_probs=168.8

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------------------Ccceeee--ecCccEEEEEeC
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMFST--VLDDVCMSLKFP   60 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~~~--~~~d~~~~v~Fs   60 (330)
                      +..++.+..|............+|...|++++|+|||++                    ..+....  +|...+..++|+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  106 (337)
T 1gxr_A           27 PFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             CCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC
T ss_pred             ecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc
Confidence            334445555655544444455689999999999999987                    0111222  577778888888


Q ss_pred             CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCC
Q psy682           61 SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNA  136 (330)
Q Consensus        61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~  136 (330)
                      |+++.+                 ++++.+++|++|+.+...   .....+|.    ..+.++.|+||+. +++++.++  
T Consensus       107 ~~~~~l-----------------~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg--  163 (337)
T 1gxr_A          107 PDGCTL-----------------IVGGEASTLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCSDG--  163 (337)
T ss_dssp             TTSSEE-----------------EEEESSSEEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEETTS--
T ss_pred             CCCCEE-----------------EEEcCCCcEEEEECCCCCcceeeecccCC----CceEEEEECCCCCEEEEEeCCC--
Confidence            888864                 677788899999997665   33344665    3567899999998 55433333  


Q ss_pred             CcceeccCC-CCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HHHH
Q psy682          137 PVPKRHLGD-NFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--ISLA  206 (330)
Q Consensus       137 ~~~~~~l~~-~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~~l  206 (330)
                      .+..+.+.. .....+..+   ..+++++||+++|+ +++.|++|++ |++.+++.+..+ .|...+.    ..  ...+
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~~-~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW-TGGLDNTVRS-WDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEE-EETTTTEEEEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE-EEecCCcEEE-EECCCCceEeee-cCCCceEEEEECCCCCEEE
Confidence            334444322 111223322   25788999999855 5558999999 999988877665 4555551    11  2233


Q ss_pred             HhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCccccc
Q psy682          207 WKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDNLQ  279 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~~dVk  279 (330)
                         +|+.||+|++|+.....+..+.+|..  .|.+++|+|||+.|++++ ++.++.|..+ |+.+........+.
T Consensus       241 ---~~~~~~~i~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~  310 (337)
T 1gxr_A          241 ---VGMESSNVEVLHVNKPDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL  310 (337)
T ss_dssp             ---EEETTSCEEEEETTSSCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             ---EEcCCCcEEEEECCCCCeEEEcCCcc--ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEE
Confidence               78999999999887666678899988  999999999999999985 8889999854 45444433333333

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=3.5e-21  Score=182.60  Aligned_cols=236  Identities=11%  Similarity=0.042  Sum_probs=148.3

Q ss_pred             EeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee---ccceec-cCCcEEEEEc
Q psy682           11 VWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA---NTYVTL-HMPSVVTVTA   86 (330)
Q Consensus        11 lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~---~~~~~~-~~~~~v~vS~   86 (330)
                      ||.+++.+.+.++++|...|++|+|||||++    +..+.++.+......+. ..++...   .....+ ..+..+.+++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~----la~g~~~~~~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSC----LILSTLKSFEIYNVHPV-AHIMSQEMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSE----EEEECSSEEEEEEETTE-EEEEEEECSCCCEEEECTTSSEEEEEC
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCE----EEEEcCCEEEEEecCCc-ceeeeeecCCeEEEEEcCCCCEEEEEE
Confidence            6778888888899999999999999999998    55566665433322221 1111110   011111 2334445667


Q ss_pred             CCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC--CccceeeeeeEEEEecCC
Q psy682           87 NHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--FSQKLRVRHNCFVTTVDS  164 (330)
Q Consensus        87 ~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~spDg  164 (330)
                      +.+++|++|+...+.......|.    +.+.++.|++|..+.+  .++  .+..+.+...  ...++.......++++  
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~----~~v~~v~~~~~~~~~~--~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~s~--  147 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVD----APVKDLFLSREFIVVS--YGD--VISVFKFGNPWKRITDDIRFGGVCEFSN--  147 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECS----SCEEEEEECSSEEEEE--ETT--EEEEEESSTTCCBSSCCEEEEEEEEEET--
T ss_pred             CCccEEEEEECCCCcEEEEEECC----CceEEEEEcCCEEEEE--EcC--EEEEEECCCCceeeEEeccCCceEEEEc--
Confidence            77889999998766544444454    3677899998876543  222  2344444322  2233333334566787  


Q ss_pred             CeEEEe-eccCCeEEEeeeccccc----------------ccccccCCCCcEE----Ee--HHHHHhhhccCCCc-EEEE
Q psy682          165 RFLLAC-GFWDNSFREPFTTMYLA----------------LQEGKFDHPNRLF----SS--ISLAWKNCQRDTSD-VKVH  220 (330)
Q Consensus       165 ~~i~as-g~~D~tirl~w~~~~g~----------------l~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgt-vkl~  220 (330)
                      ++++.+ |+.|++|++ |++.+++                .+..+.+|.+.|.    ..  ...+   |||.||+ |+||
T Consensus       148 ~~la~~sg~~~g~v~i-wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~---s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHI-TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA---TCSQDGTIIRVF  223 (355)
T ss_dssp             TEEEEEESSCTTCEEE-EECCC------------------CCEEECCCSSCEEEEEECTTSSEEE---EEETTCSEEEEE
T ss_pred             cEEEEeCCCcCcEEEE-EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE---EEeCCCCEEEEE
Confidence            565555 889999999 9998765                2778999999982    22  4444   9999999 9999


Q ss_pred             cc-cCceeeecC-C-CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCc
Q psy682          221 TT-FGDLLRSLD-P-PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN  267 (330)
Q Consensus       221 ~~-~G~ll~tL~-~-h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~  267 (330)
                      +. +|+.+++|+ + |.+  .|.+|+|||||+.||+++ ++++++|.++..
T Consensus       224 d~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             ETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             ECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            76 699999998 6 888  999999999999999995 789999997643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.3e-21  Score=175.74  Aligned_cols=208  Identities=7%  Similarity=0.081  Sum_probs=151.0

Q ss_pred             ccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682           19 LLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ...+|.+|.+.|.+++|||||++                  ..+..+.+|...|..+.|+|+++.+              
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--------------   89 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC--------------   89 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE--------------
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEE--------------
Confidence            34458999999999999999987                  2223345788888888888888864              


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCC-----CCCCcceeccCCCC-------
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-----NNAPVPKRHLGDNF-------  147 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~-----~~~~~~~~~l~~~~-------  147 (330)
                         ++++.|++|++|+...........|.    ..+.++.|+||+. +++++.+     +...++........       
T Consensus        90 ---~s~~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B           90 ---VTGSADYSIKLWDVSNGQCVATWKSP----VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             ---EEEETTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             ---EEEeCCCeEEEEECCCCcEEEEeecC----CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence               77788999999999776654444454    4677899999999 4432222     22222222211110       


Q ss_pred             ---ccceee-----eeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEE--E-e---HHHHHhhhcc
Q psy682          148 ---SQKLRV-----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLF--S-S---ISLAWKNCQR  212 (330)
Q Consensus       148 ---~~~~~~-----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS  212 (330)
                         ...+..     ...+++++||+++| ++|+.|++|++ |++.+ ++.+..+.+|...|.  + +   ...+   +++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~  237 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWSTKGKYI-IAGHKDGKISK-YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI---TSS  237 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECGGGCEE-EEEETTSEEEE-EETTTTTEEEEEEECCSSCEEEEEECTTSSEEE---EEE
T ss_pred             cceeeeccCCcCccceeEEEEcCCCCEE-EEEcCCCEEEE-EECCCCcEeEEEEecCCCceeEEEECCCCCEEE---Eec
Confidence               011111     33578899999985 55668999999 99988 788899999998882  1 2   2233   899


Q ss_pred             CCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          213 DTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       213 ~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      .||+|++|+. +|+.++++. +..  .+..++|+|+|+.++.++
T Consensus       238 ~d~~i~v~d~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          238 RDTNSFLVDVSTLQVLKKYE-TDC--PLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECSSSSEEEEEE
T ss_pred             CCceEEEEECCCCceeeeec-CCC--CceeEEecCCCceEEEee
Confidence            9999999976 689999988 444  799999999999999884

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=9.9e-22  Score=180.40  Aligned_cols=223  Identities=9%  Similarity=-0.090  Sum_probs=160.4

Q ss_pred             CcccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCC-c-------Ccc-----------eeeee--cCccEEE
Q psy682            1 MSGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQK-Y-------SPM-----------MFSTV--LDDVCMS   56 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~-~-------~~l-----------~~~~~--~~d~~~~   56 (330)
                      |+|+.||+|++|++.+++   .+..+.+|...|.+++|+|+++ +       ..+           ....+  |...|..
T Consensus        27 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  106 (342)
T 1yfq_A           27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR  106 (342)
T ss_dssp             EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEE
T ss_pred             EEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEE
Confidence            578899999999998776   3566789999999999999999 5       001           11224  6666666


Q ss_pred             EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC---------CCcccCCCCCCCCCCCCCCccccCCCce
Q psy682           57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY---------AASIQSPSYAETPGSPPGNLPLTLDPIL  127 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~---------~~~~~~~~h~~~~~~~~~~l~fs~D~~l  127 (330)
                      ++|+| +..                 +++++.+++|++|+...         ........|.    ..+.++.|++|+ +
T Consensus       107 l~~~~-~~~-----------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~-l  163 (342)
T 1yfq_A          107 ICKYG-DDK-----------------LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK----NKIFTMDTNSSR-L  163 (342)
T ss_dssp             EEEET-TTE-----------------EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC----CCEEEEEECSSE-E
T ss_pred             EEeCC-CCE-----------------EEEEcCCCeEEEEcccccccccccccCCeeeEEeeC----CceEEEEecCCc-E
Confidence            66666 554                 47888899999999865         4433333454    467789999999 6


Q ss_pred             eccCCCCCCCcceeccCC-CCc--cce----eeeeeEEEEec-CCCeEEEeeccCCeEEEeeecccc------ccccccc
Q psy682          128 THPTSNNNAPVPKRHLGD-NFS--QKL----RVRHNCFVTTV-DSRFLLACGFWDNSFREPFTTMYL------ALQEGKF  193 (330)
Q Consensus       128 ~~~s~~~~~~~~~~~l~~-~~~--~~~----~~~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g------~l~~~l~  193 (330)
                      ++++.++  .+..+.+.. ...  ...    .....+++++| |+++ +++|+.|+.|++ |+++.+      +....+.
T Consensus       164 ~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          164 IVGMNNS--QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAV-EFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EEEESTT--EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEE-EECCTTCCSTTCTTCEEEE
T ss_pred             EEEeCCC--eEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEE-EEEcCCCcccccccceeee
Confidence            6544443  334444432 110  001    11236889999 9998 455667999999 999877      7788888


Q ss_pred             CCCC---------cEE----Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCC-CCCCCCcEEEeCCCccEEEEcc-
Q psy682          194 DHPN---------RLF----SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP-SGFASPESVVMSREGVIVVNYE-  255 (330)
Q Consensus       194 gH~d---------~Vi----aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~s~~-  255 (330)
                      +|..         .|.    ..  ...+   +|+.||+|++|+. +|++++++.+| .+  .|.+++  |||+.||+++ 
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~---~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l~s~s~  312 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPRHKFLY---TAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNILCLATS  312 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEE---EEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEEEEEEE
T ss_pred             cccccccccccceeEEEEEEcCCCCEEE---EecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeEEEEec
Confidence            8865         552    11  2233   8999999999986 69999999998 88  899999  9999999985 


Q ss_pred             CC
Q psy682          256 RG  257 (330)
Q Consensus       256 ~~  257 (330)
                      ++
T Consensus       313 Dg  314 (342)
T 1yfq_A          313 DD  314 (342)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.86  E-value=3.8e-22  Score=190.47  Aligned_cols=171  Identities=12%  Similarity=0.060  Sum_probs=122.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||+.|++|||||+.+++++.++. |...|++|+|||||++                                       
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~---------------------------------------  190 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKV---------------------------------------  190 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSE---------------------------------------
T ss_pred             EECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCce---------------------------------------
Confidence            467789999999999999998886 7788999999999988                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcc--cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCc--ceeccCCCCc-----cc
Q psy682           81 VVTVTANHQFAINRWNPDYAASI--QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV--PKRHLGDNFS-----QK  150 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~--~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~--~~~~l~~~~~-----~~  150 (330)
                        +++++.+..+.+|..++..+.  ...+|..    .+.++.|+||+. +++++.++....  +.+.+.....     ..
T Consensus       191 --l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~  264 (365)
T 4h5i_A          191 --VAYITGSSLEVISTVTGSCIARKTDFDKNW----SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ  264 (365)
T ss_dssp             --EEEECSSCEEEEETTTCCEEEEECCCCTTE----EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred             --EEeccceeEEEEEeccCcceeeeecCCCCC----CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence              355565555555555555432  2336653    567899999999 555444443332  2333221110     11


Q ss_pred             eeee---eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE----EEe--HHHHHhhhccCCCcEEEE
Q psy682          151 LRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL----FSS--ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       151 ~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V----iaS--t~~lW~~SgS~Dgtvkl~  220 (330)
                      +..+   ..+++|||||++ +++|+.|++||| |++++++++++ +.+|.+.|    |.+  ...+   |||.|+|||||
T Consensus       265 ~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~i-wd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la---S~S~D~tvrvw  339 (365)
T 4h5i_A          265 VTNRFKGITSMDVDMKGEL-AVLASNDNSIAL-VKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA---SVSAANTIHII  339 (365)
T ss_dssp             EESSCSCEEEEEECTTSCE-EEEEETTSCEEE-EETTTTEEEEEETTSSSSCEEEEEECTTSCEEE---EEETTSEEEEE
T ss_pred             ecCCCCCeEeEEECCCCCc-eEEEcCCCEEEE-EECCCCcEEEEecCcccCCEEEEEECCCCCEEE---EEeCCCeEEEE
Confidence            2222   258999999998 667778999999 99999998877 58999998    222  4445   99999999999


Q ss_pred             cc
Q psy682          221 TT  222 (330)
Q Consensus       221 ~~  222 (330)
                      +.
T Consensus       340 ~i  341 (365)
T 4h5i_A          340 KL  341 (365)
T ss_dssp             EC
T ss_pred             Ec
Confidence            86

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=1.5e-21  Score=192.69  Aligned_cols=220  Identities=11%  Similarity=0.078  Sum_probs=169.5

Q ss_pred             cccCCCcEEEeecccc----cccceeecCCCc-eeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccce
Q psy682            2 SGGDKGIVEVWRTFNL----ALLYAFPSCDSS-VRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYV   74 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g----~~l~tl~gH~~~-V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~   74 (330)
                      +|+ |+.|++|++.++    +.+..|.+|... |.+++|||  ||++                                 
T Consensus        35 ~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~---------------------------------   80 (615)
T 1pgu_A           35 YPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY---------------------------------   80 (615)
T ss_dssp             EEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE---------------------------------
T ss_pred             Eec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE---------------------------------
Confidence            344 789999999999    899999999999 99999999  9887                                 


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCC---------CCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCC--CCcceec
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDY---------AASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNN--APVPKRH  142 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~---------~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~--~~~~~~~  142 (330)
                              +|+++.|++|++|+...         .......+|.    .++.++.|+||++ +++++.+.+  ..++.+.
T Consensus        81 --------l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d  148 (615)
T 1pgu_A           81 --------LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWD  148 (615)
T ss_dssp             --------EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred             --------EEEecCCCEEEEEeCCCCcccccccccccchhhccc----ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence                    47788899999999952         3344455676    4677899999999 443222211  1233444


Q ss_pred             cCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC---cE----EEeH---HHHHhh
Q psy682          143 LGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN---RL----FSSI---SLAWKN  209 (330)
Q Consensus       143 l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d---~V----iaSt---~~lW~~  209 (330)
                      .+.. ...+..+   ..+++|+||+++++++|+.|++|++ |+..+++++..+.+|.+   .|    +...   ..+   
T Consensus       149 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~---  223 (615)
T 1pgu_A          149 SGNS-LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF-YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI---  223 (615)
T ss_dssp             TCCE-EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE-EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE---
T ss_pred             CCCc-ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE-EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE---
Confidence            3221 1223333   2588999999966777889999999 99999999999999999   77    2222   233   


Q ss_pred             hccCCCcEEEEcc-cCceeeec-C---CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          210 CQRDTSDVKVHTT-FGDLLRSL-D---PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       210 SgS~Dgtvkl~~~-~G~ll~tL-~---~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      +|+.||+|++|+. +|+.++++ .   +|.+  .|.+++|+ +|+.|++++ ++.++.|.++ |+.+.....+
T Consensus       224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEeCCCeEEEEECCCCCEeEEecccccccCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            8999999999985 79999999 6   8888  99999999 999999985 7899999876 7777776654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.85  E-value=1.8e-20  Score=176.23  Aligned_cols=246  Identities=11%  Similarity=0.053  Sum_probs=170.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Ccc-----------eeeeecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPM-----------MFSTVLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l-----------~~~~~~~d~~~~v~Fs~   61 (330)
                      ++++.|++|++|++.+|+.+.++.+|.. +.+++|+|||+.        ..+           ..... ...+..++|+|
T Consensus         6 vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~sp   83 (391)
T 1l0q_A            6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-GSSPQGVAVSP   83 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSEEEEEECT
T ss_pred             EEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-CCCccceEECC
Confidence            4788999999999999999999998865 899999999985        001           11112 22667777888


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCccee
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR  141 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~  141 (330)
                      +++.+                .++++.+++|++|+...+.......+.    ..+.++.|+||++....+++.+..+..+
T Consensus        84 dg~~l----------------~~~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           84 DGKQV----------------YVTNMASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             TSSEE----------------EEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEE----------------EEEECCCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            87764                456667789999999876644433222    2467899999998331123333344455


Q ss_pred             ccCC-CCccceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee--HHHHHhhhcc-
Q psy682          142 HLGD-NFSQKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS--ISLAWKNCQR-  212 (330)
Q Consensus       142 ~l~~-~~~~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS--t~~lW~~SgS-  212 (330)
                      .+.. .....+..+  ..+++|+|||++|+++++.|++|++ |++.+++.+..+..+. .+  + .+  --.++  .++ 
T Consensus       144 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~-~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~--~~~~  219 (391)
T 1l0q_A          144 NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV-IDTVTNSVIDTVKVEA-APSGIAVNPEGTKAY--VTNV  219 (391)
T ss_dssp             ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE-EETTTTEEEEEEECSS-EEEEEEECTTSSEEE--EEEE
T ss_pred             ECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEE-EECCCCeEEEEEecCC-CccceEECCCCCEEE--EEec
Confidence            4422 111122222  2578899999998888888999999 9999888877665443 33  1 12  11111  333 


Q ss_pred             --CCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC-CceeeeccCc
Q psy682          213 --DTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       213 --~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n-G~~las~~~~  275 (330)
                        .|++|++|+. +|+.++++..|.   .+.+++|+|||+.| +++ .++.+..|... |+.+..+..+
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence              7999999986 689999998864   47899999999876 565 58899999865 6776666544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.5e-21  Score=186.31  Aligned_cols=252  Identities=11%  Similarity=0.041  Sum_probs=167.7

Q ss_pred             ccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCC-------------CCc-----------------Ccceeeee
Q psy682            3 GGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHD-------------QKY-----------------SPMMFSTV   49 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpd-------------g~~-----------------~~l~~~~~   49 (330)
                      ++.++.|++|++.+|+   .+.+++.|........+...             ++.                 .+....++
T Consensus        21 ~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (450)
T 2vdu_B           21 AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPP  100 (450)
T ss_dssp             EEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------------------C
T ss_pred             EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCCCCc
Confidence            4567899999999999   89999988776655555311             000                 00111235


Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC--CCC-cccCC--CCCCCCCCCCCCccccCC
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD--YAA-SIQSP--SYAETPGSPPGNLPLTLD  124 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~--~~~-~~~~~--~h~~~~~~~~~~l~fs~D  124 (330)
                      |.+.|..++|+|+++.+                .|+++.|++|++|+.+  .+. +..+.  +|.    ..+.++.|+||
T Consensus       101 ~~~~v~~~~~s~d~~~l----------------~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~  160 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRL----------------IACADSDKSLLVFDVDKTSKNVLKLRKRFCFS----KRPNAISIAED  160 (450)
T ss_dssp             CCCCEEEEEECTTSSEE----------------EEEEGGGTEEEEEEECSSSSSCEEEEEEEECS----SCEEEEEECTT
T ss_pred             cCCceEEEEEcCCCCEE----------------EEEECCCCeEEEEECcCCCCceeeeeecccCC----CCceEEEEcCC
Confidence            66689999999999974                4788889999999987  444 33333  343    35678999999


Q ss_pred             Cc-eeccCCCCCCCcceeccCCCC-----ccceeeee---eEEEEecC---CCeEEEeeccCCeEEEeeeccccccccc-
Q psy682          125 PI-LTHPTSNNNAPVPKRHLGDNF-----SQKLRVRH---NCFVTTVD---SRFLLACGFWDNSFREPFTTMYLALQEG-  191 (330)
Q Consensus       125 ~~-l~~~s~~~~~~~~~~~l~~~~-----~~~~~~~~---~~~~~spD---g~~i~asg~~D~tirl~w~~~~g~l~~~-  191 (330)
                      +. +++++.++.  ++.+.+...-     .+.+..|.   .+++|+||   +++ +++|+.|++||+ |++.+++++.. 
T Consensus       161 ~~~l~~~~~~g~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~~d~~i~v-wd~~~~~~~~~~  236 (450)
T 2vdu_B          161 DTTVIIADKFGD--VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSDRDEHIKI-SHYPQCFIVDKW  236 (450)
T ss_dssp             SSEEEEEETTSE--EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEETTSCEEE-EEESCTTCEEEE
T ss_pred             CCEEEEEeCCCc--EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE-EEEEcCCCcEEE-EECCCCceeeee
Confidence            98 554333332  3344332211     11344443   58899999   888 455668999999 99998988877 


Q ss_pred             ccCCCCcEEE---e--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCC-----------------------CCCCCcEE
Q psy682          192 KFDHPNRLFS---S--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPS-----------------------GFASPESV  242 (330)
Q Consensus       192 l~gH~d~Via---S--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~-----------------------~~~~v~~v  242 (330)
                      +.+|.+.|..   +  ...+   +|+.||+|+||+. +|++++++..+.                       ....|..|
T Consensus       237 ~~~h~~~v~~~~~sd~~~l~---s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          237 LFGHKHFVSSICCGKDYLLL---SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             CCCCSSCEEEEEECSTTEEE---EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             ecCCCCceEEEEECCCCEEE---EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            6699988721   2  2233   8999999999975 799999887431                       11268999


Q ss_pred             EeCCCccEEEEc--cCCeEEEEee---CC---ceeeeccCccccccc
Q psy682          243 VMSREGVIVVNY--ERGHIAAFTM---NG---NRLRHESHNDNLQEL  281 (330)
Q Consensus       243 ~fS~dG~~l~s~--~~~~~~~~s~---nG---~~las~~~~~dVkEL  281 (330)
                      +|+|||+.|+++  +++.+.+|.+   .+   +.+..+..+..+..+
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~  360 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISL  360 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEE
Confidence            999999999887  4889999998   44   455555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.85  E-value=3.3e-21  Score=198.15  Aligned_cols=230  Identities=9%  Similarity=0.074  Sum_probs=171.8

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +..++|.+|.+.|.+++|||||+.                  ..+....+|...|..++|+|+++.+             
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-------------   70 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWI-------------   70 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-------------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEE-------------
Confidence            456789999999999999999987                  1223355788889999999999975             


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeeee--
Q psy682           80 SVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVRH--  155 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~~--  155 (330)
                          |+++.+++|++|+.+.+. +.+..+|.    +.+.++.|+||+. +++++.++...+|....+....+.+..+.  
T Consensus        71 ----~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           71 ----IVGSDDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             ----EEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred             ----EEEeCCCeEEEEECCCCcEEEEEecCC----CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence                777779999999987655 44555787    4677899999998 66544444444443332222333344333  


Q ss_pred             -eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccCCC-CcE----EEe----HHHHHhhhccCCCcEEEEcc-c
Q psy682          156 -NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-NRL----FSS----ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       156 -~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-d~V----iaS----t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                       .+++|+| |+++ +++|+.|++|++ |++.+++....+..|. ..|    +..    ...+   +|+.||+|++|+. +
T Consensus       143 v~~~~~~p~~~~~-l~~~~~dg~v~v-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          143 VMCVAFNPKDPST-FASGCLDRTVKV-WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQT  217 (814)
T ss_dssp             EEEEEEETTEEEE-EEEEETTSEEEE-EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE---EECTTSEEEEEETTT
T ss_pred             EEEEEEEcCCCCE-EEEEeCCCeEEE-EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE---EEeCCCEEEEEECCC
Confidence             5888999 7877 556678999999 9998888777776654 433    111    2233   8999999999975 7


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      |+.++++.+|.+  .|.+++|+|+|..|++++ ++.++.|..+ |+.+.....+
T Consensus       218 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          218 KSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             TEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             CcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            999999999988  999999999999999986 7889999876 5666665533

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.85  E-value=1.3e-21  Score=184.21  Aligned_cols=237  Identities=10%  Similarity=-0.010  Sum_probs=167.1

Q ss_pred             EeecccccccceeecCCCceeEEEeCCCC-Cc------------------Ccceeee--ecCccEEEEEeCC-CCCeeEe
Q psy682           11 VWRTFNLALLYAFPSCDSSVRSLALSHDQ-KY------------------SPMMFST--VLDDVCMSLKFPS-NSPICHV   68 (330)
Q Consensus        11 lW~~~~g~~l~tl~gH~~~V~svafSpdg-~~------------------~~l~~~~--~~~d~~~~v~Fs~-~~~v~~~   68 (330)
                      +|++.+.++..++.+|...|++++|+||| ++                  .......  +|.+.|..++|+| ++..   
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ---  133 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE---
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE---
Confidence            45556677788999999999999999998 54                  1111122  5777888888888 5565   


Q ss_pred             eeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC
Q psy682           69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF  147 (330)
Q Consensus        69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~  147 (330)
                                    +++++.|++|++|+..+.......+|.. ....+.++.|+||+. +++++.+  ..+..+.+.+..
T Consensus       134 --------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~  196 (383)
T 3ei3_B          134 --------------LFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDST--GRLLLLGLDGHE  196 (383)
T ss_dssp             --------------EEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETT--SEEEEEETTSCE
T ss_pred             --------------EEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCC--CCEEEEECCCCE
Confidence                          4888889999999998766655554432 124677899999999 5543333  334455543333


Q ss_pred             ccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeeccc----ccccccccCCCCcE--E--Ee---HHHHHhhhccC
Q psy682          148 SQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMY----LALQEGKFDHPNRL--F--SS---ISLAWKNCQRD  213 (330)
Q Consensus       148 ~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~----g~l~~~l~gH~d~V--i--aS---t~~lW~~SgS~  213 (330)
                      ..++..+.   .+++|+|+++.++++|+.|++|++ |++.+    ++++..+ +|.+.|  +  ..   ...+   +|+.
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~---~~~~  271 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL-WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL---TTDQ  271 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE-EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE---EEES
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE-EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE---EEcC
Confidence            33344433   588999999955777779999999 99987    5566555 788887  2  12   2333   8999


Q ss_pred             CCcEEEEcc-cCceeeecCCCCCC---------------CCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceeeeccC
Q psy682          214 TSDVKVHTT-FGDLLRSLDPPSGF---------------ASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLRHESH  274 (330)
Q Consensus       214 Dgtvkl~~~-~G~ll~tL~~h~~~---------------~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~las~~~  274 (330)
                      ||+|+||+. +|+.++++.+|...               ..+..++|||||++  ++ .++.+.+|.. +|+.+..+..
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence            999999975 68888888866421               13334778888887  44 5889999986 5888887764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2e-21  Score=181.95  Aligned_cols=208  Identities=8%  Similarity=-0.037  Sum_probs=143.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||+.||+|++|++.+|+.+.++.  ...|++++|+|+                                          
T Consensus        52 ~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------------------------------------------   87 (343)
T 3lrv_A           52 MCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------------------------------------------   87 (343)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------------------------------------------
T ss_pred             EEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------------------------------------------
Confidence            589999999999999999888887  566777777663                                          


Q ss_pred             EEEEEcCCcceEEEeCCCCC---------C-cccC-CCCCCCCCCCCCCccccC--CCc-eeccCCCCCCCcceeccCCC
Q psy682           81 VVTVTANHQFAINRWNPDYA---------A-SIQS-PSYAETPGSPPGNLPLTL--DPI-LTHPTSNNNAPVPKRHLGDN  146 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~---------~-~~~~-~~h~~~~~~~~~~l~fs~--D~~-l~~~s~~~~~~~~~~~l~~~  146 (330)
                        .+|++.|++|++|+.++.         . +... .+|.    +++.++.|+|  |+. +++++.++...+|....+..
T Consensus        88 --~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~  161 (343)
T 3lrv_A           88 --IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA----NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ  161 (343)
T ss_dssp             --EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS----SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE
T ss_pred             --eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC----CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE
Confidence              278888889999977532         1 1122 2454    4678899999  998 55444444444433222221


Q ss_pred             Cccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc-ccccC-CCCcE----EEe--HHHHHhhhccCC
Q psy682          147 FSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFD-HPNRL----FSS--ISLAWKNCQRDT  214 (330)
Q Consensus       147 ~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~g-H~d~V----iaS--t~~lW~~SgS~D  214 (330)
                      . .....    ...+++|+|||++ +++|+.|++||+ |++.+++.. ..+.+ |.+.|    +..  ...+   +|+ |
T Consensus       162 ~-~~~~~~~~~~i~~~~~~pdg~~-lasg~~dg~i~i-wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~---s~~-~  234 (343)
T 3lrv_A          162 Y-IVHSAKSDVEYSSGVLHKDSLL-LALYSPDGILDV-YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV---VEC-D  234 (343)
T ss_dssp             E-EEECCCSSCCCCEEEECTTSCE-EEEECTTSCEEE-EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE---EEE-S
T ss_pred             E-EEEecCCCCceEEEEECCCCCE-EEEEcCCCEEEE-EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE---EEe-C
Confidence            1 11111    1358899999998 666778999999 999999887 77888 99988    222  3333   778 5


Q ss_pred             CcEEEEcc-cCceeeecCCCCCC-CCCc--EEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682          215 SDVKVHTT-FGDLLRSLDPPSGF-ASPE--SVVMSREGVIVVNY--ERGHIAAFTMN  265 (330)
Q Consensus       215 gtvkl~~~-~G~ll~tL~~h~~~-~~v~--~v~fS~dG~~l~s~--~~~~~~~~s~n  265 (330)
                      ++|+||+. +++.++++..+... ..+.  +++|+|+|+.|+++  +++.+++|..+
T Consensus       235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            59999976 67777777663221 1444  59999999999995  38889999774

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.84  E-value=1.3e-20  Score=182.63  Aligned_cols=177  Identities=10%  Similarity=0.012  Sum_probs=127.6

Q ss_pred             EEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCCCcccee-----
Q psy682           83 TVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDNFSQKLR-----  152 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~-----  152 (330)
                      +|+++.|++|++|+.+...   .....||.+    .+.++.|+| |+. +++++.++.  +..|.+.....+.+.     
T Consensus       135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~----~V~~l~f~p~~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~  208 (435)
T 4e54_B          135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG----SITGLKFNPLNTNQFYASSMEGT--TRLQDFKGNILRVFASSDTI  208 (435)
T ss_dssp             EEEEETTSCEEEECSSCCSCCEEECCCSSSC----CCCEEEECSSCTTEEEEECSSSC--EEEEETTSCEEEEEECCSSC
T ss_pred             EEEEeCCCEEEEEECCCCCceeEEEccCCCC----CEEEEEEeCCCCCEEEEEeCCCE--EEEeeccCCceeEEeccCCC
Confidence            4888999999999987554   334558974    677899997 676 666555544  344444322111111     


Q ss_pred             -eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e---HHHHHhhhccCCCcEEEEcc-c
Q psy682          153 -VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S---ISLAWKNCQRDTSDVKVHTT-F  223 (330)
Q Consensus       153 -~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S---t~~lW~~SgS~Dgtvkl~~~-~  223 (330)
                       ....+++|+||+++ +++|+.|++|++ |+++ ++.+..+.+|.+.|.  +  .   .+.+   +||.||+|+||+. +
T Consensus       209 ~~~~~~~~~~~~~~~-l~~g~~dg~i~~-wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~---s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          209 NIWFCSLDVSASSRM-VVTGDNVGNVIL-LNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA---TASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SCCCCCEEEETTTTE-EEEECSSSBEEE-EESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE---EEETTSBCCEEETTT
T ss_pred             CccEEEEEECCCCCE-EEEEeCCCcEee-eccC-cceeEEEecccceEEeeeecCCCceEEE---EecCcceeeEEeccc
Confidence             11247889999998 566778999999 9995 788889999999982  1  1   2333   8999999999975 4


Q ss_pred             Ccee---eecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682          224 GDLL---RSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       224 G~ll---~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~  273 (330)
                      ++..   ....+|.+  .|++|+|||||+.|++++ ++.+++|... |..+..+.
T Consensus       283 ~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          283 VRGKASFLYSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             CCSSSCCSBCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             ccccceEEEeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            4433   33467888  999999999999999995 8899999764 55554443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.83  E-value=1.3e-20  Score=174.60  Aligned_cols=210  Identities=10%  Similarity=-0.012  Sum_probs=150.7

Q ss_pred             CcccCCCcEEEeecccccccce--eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA--FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t--l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.||+|++|++.+++....  +.+|...|.+++|+|||++                                     
T Consensus        68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------  110 (372)
T 1k8k_C           68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-------------------------------------  110 (372)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE-------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE-------------------------------------
Confidence            4788999999999988764443  4789999999999998776                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC----cccC-CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--------
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA----SIQS-PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--------  144 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~----~~~~-~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--------  144 (330)
                          +++++.++.|++|+.+...    .... .+|.    ..+.++.|+||+. +++++.++.  +..+.+.        
T Consensus       111 ----l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~dg~--i~~~d~~~~~~~~~~  180 (372)
T 1k8k_C          111 ----FAVGSGSRVISICYFEQENDWWVCKHIKKPIR----STVLSLDWHPNSVLLAAGSCDFK--CRIFSAYIKEVEERP  180 (372)
T ss_dssp             ----EEEEETTSSEEEEEEETTTTEEEEEEECTTCC----SCEEEEEECTTSSEEEEEETTSC--EEEEECCCTTTSCCC
T ss_pred             ----EEEEeCCCEEEEEEecCCCcceeeeeeecccC----CCeeEEEEcCCCCEEEEEcCCCC--EEEEEcccccccccc
Confidence                3677778889999987654    2222 3565    4677899999998 555344443  3334321        


Q ss_pred             -----------CCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe--HH
Q psy682          145 -----------DNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS--IS  204 (330)
Q Consensus       145 -----------~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS--t~  204 (330)
                                 +.....+..+   ..+++|+||+++| ++|+.|++|++ |++.+++++..+.+|...|    +..  ..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  258 (372)
T 1k8k_C          181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV-AWVSHDSTVCL-ADADKKMAVATLASETLPLLAVTFITESSL  258 (372)
T ss_dssp             CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE-EEEETTTEEEE-EEGGGTTEEEEEECSSCCEEEEEEEETTEE
T ss_pred             cccccccccchhhheEecCCCCCeEEEEEECCCCCEE-EEEeCCCEEEE-EECCCCceeEEEccCCCCeEEEEEecCCCE
Confidence                       1111222222   3588899999985 55568999999 9999999999999998877    222  22


Q ss_pred             HHHhhhccCCCcEEEEccc---Cc--ee------------------------------------eec-CCCCCCCCCcEE
Q psy682          205 LAWKNCQRDTSDVKVHTTF---GD--LL------------------------------------RSL-DPPSGFASPESV  242 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~~---G~--ll------------------------------------~tL-~~h~~~~~v~~v  242 (330)
                      .+   +| .||+|++|+..   |+  ++                                    ..+ .+|.+  .|.+|
T Consensus       259 l~---~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~  332 (372)
T 1k8k_C          259 VA---AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN--SVSQI  332 (372)
T ss_dssp             EE---EE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS--CEEEE
T ss_pred             EE---EE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC--Cccee
Confidence            22   44 89999999764   32  11                                    334 48888  99999


Q ss_pred             Ee-CCCc---cEEEEcc-CCeEEEEeeC
Q psy682          243 VM-SREG---VIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       243 ~f-S~dG---~~l~s~~-~~~~~~~s~n  265 (330)
                      +| +++|   +.||+++ ++.++.|.++
T Consensus       333 ~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          333 SVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             EEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             EEecCCCcceeeEEEecCCCceEEEEec
Confidence            85 4888   9999985 8899999854

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.7e-21  Score=199.35  Aligned_cols=211  Identities=11%  Similarity=0.063  Sum_probs=158.9

Q ss_pred             CcccCCCcEEEeecc--cccccceeecCCCceeEEEeCCC--CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHD--QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpd--g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |+|+.||+|++|++.  +++.+.++.+|.+.|++++|+|+  |+.                                   
T Consensus        25 atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~-----------------------------------   69 (753)
T 3jro_A           25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-----------------------------------   69 (753)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSE-----------------------------------
T ss_pred             EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCE-----------------------------------
Confidence            578999999999998  66888899999999999999987  555                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC---C
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN---F  147 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~---~  147 (330)
                            +++++.|++|++|+.+.+   ......+|.    ..+.++.|+||  +. +++++.++..  ..+.+...   .
T Consensus        70 ------l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~----~~V~~v~~sp~~~~~~l~sgs~dg~I--~vwdl~~~~~~~  137 (753)
T 3jro_A           70 ------LASCSYDGKVLIWKEENGRWSQIAVHAVHS----ASVNSVQWAPHEYGPLLLVASSDGKV--SVVEFKENGTTS  137 (753)
T ss_dssp             ------EEEEETTSCEEEEEEETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSEE--EEEECCSSSCCC
T ss_pred             ------EEEEeCCCeEEEEECCCCcccccccccCCC----CCeEEEEECCCCCCCEEEEEeCCCcE--EEEEeecCCCcc
Confidence                  488888999999999776   345556786    46788999999  76 6654444433  33433222   1


Q ss_pred             ccceeee---eeEEEEec-------------CCCeEEEeeccCCeEEEeeecccc----cccccccCCCCcEE----EeH
Q psy682          148 SQKLRVR---HNCFVTTV-------------DSRFLLACGFWDNSFREPFTTMYL----ALQEGKFDHPNRLF----SSI  203 (330)
Q Consensus       148 ~~~~~~~---~~~~~~sp-------------Dg~~i~asg~~D~tirl~w~~~~g----~l~~~l~gH~d~Vi----aSt  203 (330)
                      ...+..+   ..+++++|             |+++ +++|+.|++|++ |++.++    ++...+.+|...|.    .+.
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~-l~sgs~dg~I~i-wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~  215 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI-WKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  215 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCC-EEEEETTSCEEE-EEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCE-EEEEECCCeEEE-EeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence            1112222   25888999             5888 555668999999 999776    56778899999882    212


Q ss_pred             -----HHHHhhhccCCCcEEEEcccC-c-----eeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          204 -----SLAWKNCQRDTSDVKVHTTFG-D-----LLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       204 -----~~lW~~SgS~Dgtvkl~~~~G-~-----ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                           ..+   +|+.||+|++|+... +     .+....+|.+  .|.+++|+|||+.+++++ ++.++.|..+
T Consensus       216 ~~~~~~l~---s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          216 VLLRSYLA---SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CSSSEEEE---EEESSSCEEEEEESSSSSCCBCCBSSSSCCSS--CCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCCEEE---EEecCCEEEEecCCCCCCcceeEEeccCCCCC--ceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence                 233   899999999998743 2     4455566777  899999999999999984 8899999887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.2e-20  Score=172.93  Aligned_cols=236  Identities=11%  Similarity=0.006  Sum_probs=160.7

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCC-c-------Cccee---------------------eee--------
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQK-Y-------SPMMF---------------------STV--------   49 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~-~-------~~l~~---------------------~~~--------   49 (330)
                      ..+.+|+.+..........|.+.|++++|||||+ +       ..+..                     ...        
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS  104 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence            3567788765555445566779999999999999 5       00110                     011        


Q ss_pred             --cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-
Q psy682           50 --LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-  126 (330)
Q Consensus        50 --~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-  126 (330)
                        |.+.|..++|+|+++.+                 ++++.+++|++|+.++..+....+|.    ..+.++.|+||+. 
T Consensus       105 ~~~~~~v~~~~~s~~~~~l-----------------~~~~~dg~i~i~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~  163 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSI-----------------VTGVENGELRLWNKTGALLNVLNFHR----APIVSVKWNKDGTH  163 (425)
T ss_dssp             ---CBCEEEEEECTTSSEE-----------------EEEETTSCEEEEETTSCEEEEECCCC----SCEEEEEECTTSSE
T ss_pred             cCCCCceEEEEEcCCCCEE-----------------EEEeCCCeEEEEeCCCCeeeeccCCC----ccEEEEEECCCCCE
Confidence              35567777777777764                 77788899999998777778888887    4677899999998 


Q ss_pred             eeccCCCCCCCcceeccCCC-Cccceeee------------------eeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682          127 LTHPTSNNNAPVPKRHLGDN-FSQKLRVR------------------HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA  187 (330)
Q Consensus       127 l~~~s~~~~~~~~~~~l~~~-~~~~~~~~------------------~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~  187 (330)
                      +++++.++.  +..+.+... ....+..+                  ..+++++|++.+ + +++.|+.|++ |++.+++
T Consensus       164 l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~i~~-~d~~~~~  238 (425)
T 1r5m_A          164 IISMDVENV--TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-V-IPGPKGAIFV-YQITEKT  238 (425)
T ss_dssp             EEEEETTCC--EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE-E-EECGGGCEEE-EETTCSS
T ss_pred             EEEEecCCe--EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE-E-EEcCCCeEEE-EEcCCCc
Confidence            555444333  333433211 11111111                  356778998753 4 4557999999 9999999


Q ss_pred             ccccccCCCCcE--E--Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeE
Q psy682          188 LQEGKFDHPNRL--F--SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHI  259 (330)
Q Consensus       188 l~~~l~gH~d~V--i--aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~  259 (330)
                      .+..+.+|...|  +  ..  ...+   +|+.||+|++|+. +++.++++.+|..  .|.+++|+|+| .++++ .++.+
T Consensus       239 ~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i  312 (425)
T 1r5m_A          239 PTGKLIGHHGPISVLEFNDTNKLLL---SASDDGTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSV  312 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTTTEEE---EEETTSCEEEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEE
T ss_pred             eeeeeccCCCceEEEEECCCCCEEE---EEcCCCEEEEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcE
Confidence            999999999987  2  22  3333   8999999999975 6899999999988  99999999999 66665 58888


Q ss_pred             EEEee-CCceeeeccC
Q psy682          260 AAFTM-NGNRLRHESH  274 (330)
Q Consensus       260 ~~~s~-nG~~las~~~  274 (330)
                      ..|.+ +|+.+.....
T Consensus       313 ~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          313 RLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCcEeEeccc
Confidence            88875 4666655553

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.83  E-value=5.5e-21  Score=185.39  Aligned_cols=187  Identities=10%  Similarity=-0.023  Sum_probs=128.2

Q ss_pred             CcEEEeecccccccce-eecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCC---CCCeeEeeeccceeccCCcEE
Q psy682            7 GIVEVWRTFNLALLYA-FPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPS---NSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~t-l~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~---~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      .++++|++.+|+++.+ +.||...|+.++|||||+.  +....+|...+..++|+|   +++.+                
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~fs~~~g~~~~L----------------  196 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTFAEVQGMQEAL----------------  196 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEEEEEETSTTEE----------------
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEeeccCCCCceE----------------
Confidence            3589999999999999 6899999999999999987  334558888888888888   67864                


Q ss_pred             EEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceecc-C----------CCCCCCcceeccCCCCccc
Q psy682           83 TVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHP-T----------SNNNAPVPKRHLGDNFSQK  150 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~-s----------~~~~~~~~~~~l~~~~~~~  150 (330)
                       ||++.|++||+|+...+. +.++.+|...+. .+.+++|+|||++... +          ++.+..+..+....    .
T Consensus       197 -aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t----g  270 (356)
T 2w18_A          197 -LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT----T  270 (356)
T ss_dssp             -EEEETTSEEEEEETTTCCEEEEEECCC---C-CCEEEEEEETTEEEEEEC------------CCEEEEEEETTT----T
T ss_pred             -EEecCCCcEEEEECCCCcEEEEEcCCCccee-eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC----C
Confidence             999999999999998665 566655543222 4556789999995421 1          11111112222110    0


Q ss_pred             eeeeeeEEEEecCCC---e--------EEEeeccCCeEEEeeecccccccccccCCCCcEE-----Ee--HHHHHhhhcc
Q psy682          151 LRVRHNCFVTTVDSR---F--------LLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF-----SS--ISLAWKNCQR  212 (330)
Q Consensus       151 ~~~~~~~~~~spDg~---~--------i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi-----aS--t~~lW~~SgS  212 (330)
                      .......+++ |||+   +        ++++|+.|++||| |++.+|++++++.+|.+.|+     .+  ..++   |||
T Consensus       271 k~l~v~~~~~-p~Gh~~~~lsg~~sg~~lASgS~DgTIkI-WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La---SGS  345 (356)
T 2w18_A          271 LSVGVMLYCL-PPGQAGRFLEGDVKDHCAAAILTSGTIAI-WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL---AGQ  345 (356)
T ss_dssp             EEEEEEEECC-CTTCCCCEEEEEEETTEEEEEETTSCEEE-EETTTCSEEEEECCC--CCCCEEEECSSSSEEE---EEC
T ss_pred             EEEEEEEeec-cCCCcceeEccccCCCEEEEEcCCCcEEE-EECCCCcEEEEecCCCCCeEEEEEECCCCCEEE---EEE
Confidence            1111111111 4444   1        3788889999999 99999999999999988542     22  3444   999


Q ss_pred             CCCcEEEEcc
Q psy682          213 DTSDVKVHTT  222 (330)
Q Consensus       213 ~Dgtvkl~~~  222 (330)
                      .|||||||+.
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.82  E-value=7e-21  Score=182.36  Aligned_cols=212  Identities=14%  Similarity=0.088  Sum_probs=149.2

Q ss_pred             Eeeccccccccee-ecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCC
Q psy682           11 VWRTFNLALLYAF-PSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH   88 (330)
Q Consensus        11 lW~~~~g~~l~tl-~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~   88 (330)
                      .|+. +|+++.+| .+|.+.|++++|+| ||++                                         +||++.
T Consensus        47 ~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~-----------------------------------------l~s~s~   84 (437)
T 3gre_A           47 MGNL-RGKLIATLMENEPNSITSSAVSPGETPY-----------------------------------------LITGSD   84 (437)
T ss_dssp             GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCE-----------------------------------------EEEEET
T ss_pred             cccc-cceEEeeeccCCCCceEEEEECCCCCCE-----------------------------------------EEEecC
Confidence            4764 56777777 77777777777777 6665                                         488889


Q ss_pred             cceEEEeCCCC---CC-c--ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec--cCCCCccceeee-----
Q psy682           89 QFAINRWNPDY---AA-S--IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH--LGDNFSQKLRVR-----  154 (330)
Q Consensus        89 ~~tv~lW~~~~---~~-~--~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~--l~~~~~~~~~~~-----  154 (330)
                      |++|++|+...   .. .  ....+|.    ..+.++.|+||+. +++++.++...+|...  ..+........+     
T Consensus        85 dg~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~  160 (437)
T 3gre_A           85 QGVIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI  160 (437)
T ss_dssp             TSEEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CceEEEeECcccccCcccceeeeccCC----CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence            99999999865   22 1  1122565    4678899999998 6654555444444321  011111111111     


Q ss_pred             ----------eeEEE--EecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcE--EE-e---HHHHHhhhccCC
Q psy682          155 ----------HNCFV--TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRL--FS-S---ISLAWKNCQRDT  214 (330)
Q Consensus       155 ----------~~~~~--~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~V--ia-S---t~~lW~~SgS~D  214 (330)
                                ..+++  +++|+++ +++|+.|++|++ |++.+++++..+.+  |.+.|  ++ +   ...+   +|+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~---s~~~d  235 (437)
T 3gre_A          161 NLKNFGKNEYAVRMRAFVNEEKSL-LVALTNLSRVII-FDIRTLERLQIIENSPRHGAVSSICIDEECCVLI---LGTTR  235 (437)
T ss_dssp             EGGGGSSCCCEEEEEEEECSSCEE-EEEEETTSEEEE-EETTTCCEEEEEECCGGGCCEEEEEECTTSCEEE---EEETT
T ss_pred             EccCcccccCceEEEEEEcCCCCE-EEEEeCCCeEEE-EeCCCCeeeEEEccCCCCCceEEEEECCCCCEEE---EEcCC
Confidence                      11222  5678988 555668999999 99999999999998  78877  21 2   3333   89999


Q ss_pred             CcEEEEcc-cCceeeecC-CCCCCCCCcEE----EeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc
Q psy682          215 SDVKVHTT-FGDLLRSLD-PPSGFASPESV----VMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       215 gtvkl~~~-~G~ll~tL~-~h~~~~~v~~v----~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~  275 (330)
                      |+|+||+. +|++++++. +|..  .|.+|    +|+|||+.|++++ ++.+++|..+ |+.+..+..+
T Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          236 GIIDIWDIRFNVLIRSWSFGDHA--PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             SCEEEEETTTTEEEEEEBCTTCE--EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred             CeEEEEEcCCccEEEEEecCCCC--ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence            99999975 799999987 7776  89999    6667899999995 7789999986 7777777644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2e-19  Score=162.23  Aligned_cols=222  Identities=11%  Similarity=0.032  Sum_probs=159.3

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +++.+|.+|.+.|++++| ||++.                  ........|...+..++|+|++..+             
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-------------   74 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL-------------   74 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE-------------
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE-------------
Confidence            678889999999999999 88877                  1122344677788888888888875             


Q ss_pred             cEEEEEcCCcceEEEeCCCCCC----cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee
Q psy682           80 SVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR  154 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~  154 (330)
                          ++++.++.|++|+.....    .....+|..    .+.++.|  |+. +++++.++.  +..+..+ .....+..+
T Consensus        75 ----~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~--~~~~l~~~~~d~~--i~~~d~~-~~~~~~~~~  141 (313)
T 3odt_A           75 ----LFGGKDTMINGVPLFATSGEDPLYTLIGHQG----NVCSLSF--QDGVVISGSWDKT--AKVWKEG-SLVYNLQAH  141 (313)
T ss_dssp             ----EEEETTSCEEEEETTCCTTSCC-CEECCCSS----CEEEEEE--ETTEEEEEETTSE--EEEEETT-EEEEEEECC
T ss_pred             ----EEecCCCeEEEEEeeecCCCCcccchhhccc----CEEEEEe--cCCEEEEEeCCCC--EEEEcCC-cEEEecccC
Confidence                777888999999875432    445557764    5566777  444 555344333  3334322 122223333


Q ss_pred             e---eEEEEec-CCCeEEEeeccCCeEEEeeecccccccccccC-CCCcE----EEe--HHHHHhhhccCCCcEEEEcc-
Q psy682          155 H---NCFVTTV-DSRFLLACGFWDNSFREPFTTMYLALQEGKFD-HPNRL----FSS--ISLAWKNCQRDTSDVKVHTT-  222 (330)
Q Consensus       155 ~---~~~~~sp-Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~g-H~d~V----iaS--t~~lW~~SgS~Dgtvkl~~~-  222 (330)
                      .   .++++.| +++++ ++++.|++|++ |+.  ++....+.+ |...|    +..  . .+   +|+.||+|++|+. 
T Consensus       142 ~~~v~~~~~~~~~~~~l-~~~~~d~~i~i-~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~dg~i~i~d~~  213 (313)
T 3odt_A          142 NASVWDAKVVSFSENKF-LTASADKTIKL-WQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FI---SCSNDGLIKLVDMH  213 (313)
T ss_dssp             SSCEEEEEEEETTTTEE-EEEETTSCEEE-EET--TEEEEEECSSCSSCEEEEEEEETTE-EE---EEETTSEEEEEETT
T ss_pred             CCceeEEEEccCCCCEE-EEEECCCCEEE-Eec--CceEEEEeccCcccEEEEEEcCCCe-EE---EccCCCeEEEEECC
Confidence            2   4677777 88884 55668999999 994  566667777 88877    222  3 33   8999999999976 


Q ss_pred             cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeeccCcc
Q psy682          223 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHESHND  276 (330)
Q Consensus       223 ~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~~~~  276 (330)
                      +|++++++.+|.+  .|.+++|+|+|++++.+.++.++.|.. +|+.+.....+.
T Consensus       214 ~~~~~~~~~~~~~--~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          214 TGDVLRTYEGHES--FVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             TCCEEEEEECCSS--CEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             chhhhhhhhcCCc--eEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            6999999999998  999999999997665557999999985 677777776553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.82  E-value=1.2e-19  Score=172.75  Aligned_cols=240  Identities=9%  Similarity=0.012  Sum_probs=167.1

Q ss_pred             CcccCCCcEEEeecccccccc-----eeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLY-----AFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~-----tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v   57 (330)
                      ++++.|++|++|++.+|+.+.     .+.+|...|++++|+|+|++                  ..+.....+...+..+
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~  217 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL  217 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence            357788999999999998877     56799999999999999987                  1112233566677778


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCc-eeccCCCC-
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPI-LTHPTSNN-  134 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~-  134 (330)
                      .|+|+++.+                .++++.+++|++|+........ ...+.     .+..+.|+||+. +++++.+. 
T Consensus       218 ~~~~~~~~l----------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          218 LYDPIRDLV----------------YCSNWISEDISVIDRKTKLEIRKTDKIG-----LPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             EEETTTTEE----------------EEEETTTTEEEEEETTTTEEEEECCCCS-----EEEEEEECTTSSEEEEEEEESC
T ss_pred             EEcCCCCEE----------------EEEecCCCcEEEEECCCCcEEEEecCCC-----CceEEEEcCCCCEEEEEECCCC
Confidence            888888764                4566678899999986555333 33332     367899999997 54432211 


Q ss_pred             -----CCCcceeccCC-CCccce--eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee-
Q psy682          135 -----NAPVPKRHLGD-NFSQKL--RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS-  202 (330)
Q Consensus       135 -----~~~~~~~~l~~-~~~~~~--~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS-  202 (330)
                           +..+..+.+.. .....+  .....+++|+||+++++++++.|++|++ |++++++++..+. |...+  + .+ 
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v-~d~~~~~~~~~~~-~~~~~~~~~~s~  354 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV-YDLKEKKVQKSIP-VFDKPNTIALSP  354 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE-EETTTTEEEEEEE-CSSSEEEEEECT
T ss_pred             ccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEE-EECCCCcEEEEec-CCCCCCeEEEcC
Confidence                 11233444321 111111  1223578899999988898889999999 9999888876664 43333  1 01 


Q ss_pred             -HHHHHh-------------hhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682          203 -ISLAWK-------------NCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  265 (330)
Q Consensus       203 -t~~lW~-------------~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n  265 (330)
                       --.++-             .+|+.||+|++|+. +|+.+.++.++ .  .|..++|+|||+.|+.+  .++.+..|.++
T Consensus       355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~--~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-N--QPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-S--SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-C--CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence             000000             15667899999976 78999998874 3  68999999999988766  38999999987


Q ss_pred             C
Q psy682          266 G  266 (330)
Q Consensus       266 G  266 (330)
                      |
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.82  E-value=2.1e-20  Score=174.91  Aligned_cols=168  Identities=8%  Similarity=-0.069  Sum_probs=114.8

Q ss_pred             CcccCCCcEEEeeccccc---ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFNLA---LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~---~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      |+|+.||+|++|++.+++   ....+.+|...|++++|+|||++                                    
T Consensus        71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------  114 (377)
T 3dwl_C           71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK------------------------------------  114 (377)
T ss_dssp             EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSC------------------------------------
T ss_pred             EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCE------------------------------------
Confidence            578999999999999877   67778899999999999998887                                    


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCC----cccCCC-CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC-------
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAA----SIQSPS-YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG-------  144 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~----~~~~~~-h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~-------  144 (330)
                           +++++.|++|++|+.+...    .....+ |.    ..+.++.|+||+. +++++.++.  +..|.+.       
T Consensus       115 -----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~  183 (377)
T 3dwl_C          115 -----FAVGSGARVISVCYFEQENDWWVSKHLKRPLR----STILSLDWHPNNVLLAAGCADRK--AYVLSAYVRDVDAK  183 (377)
T ss_dssp             -----CEEEESSSCEEECCC-----CCCCEEECSSCC----SCEEEEEECTTSSEEEEEESSSC--EEEEEECCSSCC-C
T ss_pred             -----EEEEecCCeEEEEEECCcccceeeeEeecccC----CCeEEEEEcCCCCEEEEEeCCCE--EEEEEEEecccCCC
Confidence                 3777788899999998764    455555 76    4677899999998 665444443  3344431       


Q ss_pred             ------------CCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccc----cccccCCCCcE----EE
Q psy682          145 ------------DNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPNRL----FS  201 (330)
Q Consensus       145 ------------~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d~V----ia  201 (330)
                                  +.....+ .|   ..+++|+|||++ +++|+.|++|++ |++.+++.    +..+.+|.+.|    +.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          184 PEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTI-AYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             CCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC--CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             ccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEE-EECCCCCCcceeeEeecCCCCceEEEEEc
Confidence                        0011111 22   358899999998 555668999999 99999987    89999999987    22


Q ss_pred             e--HHHHHhhhccCCCcEEEEc
Q psy682          202 S--ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       202 S--t~~lW~~SgS~Dgtvkl~~  221 (330)
                      .  ...+   +|+.|+.+++|.
T Consensus       261 ~~~~~l~---~~~~~~~~~~~~  279 (377)
T 3dwl_C          261 NESAIVA---AGYNYSPILLQG  279 (377)
T ss_dssp             ETTEEEE---EESSSSEEEECC
T ss_pred             CCCCEEE---EEcCCcEEEEEe
Confidence            2  3333   788777775444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=178.14  Aligned_cols=242  Identities=10%  Similarity=0.014  Sum_probs=158.5

Q ss_pred             cccCCCcEEEeeccc--ccccceeecCCCceeEEEeCCCCCc------------------C-----------cceeeeec
Q psy682            2 SGGDKGIVEVWRTFN--LALLYAFPSCDSSVRSLALSHDQKY------------------S-----------PMMFSTVL   50 (330)
Q Consensus         2 sgs~d~~V~lW~~~~--g~~l~tl~gH~~~V~svafSpdg~~------------------~-----------~l~~~~~~   50 (330)
                      +|-.++...-|+...  ++... --.|.+.|++|+|||||++                  .           .+..+.+|
T Consensus         2 ~~~~~~~~~~w~~~q~~~~~~~-~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h   80 (447)
T 3dw8_B            2 AGAGGGNDIQWCFSQVKGAVDD-DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH   80 (447)
T ss_dssp             ------CCCCCEEEECCSCSSS-CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECC
T ss_pred             CCCCCCcceeEEEEEecccccc-cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccc
Confidence            344444455566532  12111 1347899999999999988                  0           12234466


Q ss_pred             C------------ccEEEEEeCCCC--CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-------------
Q psy682           51 D------------DVCMSLKFPSNS--PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-------------  103 (330)
Q Consensus        51 ~------------d~~~~v~Fs~~~--~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-------------  103 (330)
                      .            +.|..++|+|++  ..                 +++++.|++|++|+.......             
T Consensus        81 ~~~~~~~~~~~~~~~V~~l~~~~~~~~~~-----------------l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~  143 (447)
T 3dw8_B           81 EPEFDYLKSLEIEEKINKIRWLPQKNAAQ-----------------FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRY  143 (447)
T ss_dssp             CCEEEGGGTEEECCCCCEEEECCCCSSSE-----------------EEEEECSSCEEEEEEEEEEEEEECCSCC------
T ss_pred             cccccccccccccCceEEEEEcCCCCcce-----------------EEEeCCCCeEEEEecccccCCcceecccCccccc
Confidence            5            667777888776  44                 367788999999998642221             


Q ss_pred             ---------------------------c-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC--CCCcc----
Q psy682          104 ---------------------------Q-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--DNFSQ----  149 (330)
Q Consensus       104 ---------------------------~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~--~~~~~----  149 (330)
                                                 . ..+|.    ..+.++.|+||+.+.+.+  .+..+..|.+.  +...+    
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~  217 (447)
T 3dw8_B          144 RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT----YHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDI  217 (447)
T ss_dssp             --CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS----SCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEEC
T ss_pred             cCcccccceEeccccchheeeeccceEEeccCCC----cceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeec
Confidence                                       1 34776    467789999999944322  33344455543  10000    


Q ss_pred             ---ceeee---eeEEEEecCC-CeEEEeeccCCeEEEeeecccccc----cccccCCCC------------cE--E--Ee
Q psy682          150 ---KLRVR---HNCFVTTVDS-RFLLACGFWDNSFREPFTTMYLAL----QEGKFDHPN------------RL--F--SS  202 (330)
Q Consensus       150 ---~~~~~---~~~~~~spDg-~~i~asg~~D~tirl~w~~~~g~l----~~~l~gH~d------------~V--i--aS  202 (330)
                         .+..+   ..+++|+||+ ++ +++|+.|++||+ |++.++++    ...+.+|.+            .|  +  ..
T Consensus       218 ~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  295 (447)
T 3dw8_B          218 KPANMEELTEVITAAEFHPNSCNT-FVYSSSKGTIRL-CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH  295 (447)
T ss_dssp             CCSSGGGCCCCEEEEEECSSCTTE-EEEEETTSCEEE-EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred             ccccccccCcceEEEEECCCCCcE-EEEEeCCCeEEE-EECcCCccccceeeEeccCCCccccccccccCceEEEEEECC
Confidence               12222   3688999999 66 666778999999 99998887    788889986            55  1  11


Q ss_pred             --HHHHHhhhccCCCcEEEEcc--cCceeeecCCCCCCC-------------CCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT--FGDLLRSLDPPSGFA-------------SPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~~h~~~~-------------~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                        ...+   +|+. |+|+||+.  .|+.++++.+|....             .+..++|||||+.||+++ ++.+++|..
T Consensus       296 ~g~~l~---~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          296 SGRYMM---TRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             TSSEEE---EEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             CCCEEE---EeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence              3333   7888 99999976  399999999996510             133499999999999985 889999998


Q ss_pred             CCceeeecc
Q psy682          265 NGNRLRHES  273 (330)
Q Consensus       265 nG~~las~~  273 (330)
                      +...+..+.
T Consensus       372 ~~~~~~~~~  380 (447)
T 3dw8_B          372 NTKRDITLE  380 (447)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcceeee
Confidence            776555544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.82  E-value=6.5e-20  Score=168.65  Aligned_cols=218  Identities=8%  Similarity=0.019  Sum_probs=151.1

Q ss_pred             eecCCCceeEEEeCCC---CCc-------------------Ccceeee-----ecCccEEEEEeCCCCCeeEeeecccee
Q psy682           23 FPSCDSSVRSLALSHD---QKY-------------------SPMMFST-----VLDDVCMSLKFPSNSPICHVTANTYVT   75 (330)
Q Consensus        23 l~gH~~~V~svafSpd---g~~-------------------~~l~~~~-----~~~d~~~~v~Fs~~~~v~~~~~~~~~~   75 (330)
                      ..+|.+.|++++|+|+   +..                   ..+....     .|+..|..++|+|++.           
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------   82 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN-----------   82 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT-----------
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC-----------
Confidence            4599999999999995   442                   0111111     1345566666666632           


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCC-Cccce
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDN-FSQKL  151 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~-~~~~~  151 (330)
                        .++..+++++.+++|++|+.+... +..+.+|.    ..+.++.|+| |+. +++++.++.  +..|.+... ....+
T Consensus        83 --~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           83 --TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG----NAINELKFHPRDPNLLLSVSKDHA--LRLWNIQTDTLVAIF  154 (366)
T ss_dssp             --TCCEEEEEEETTCEEEEECTTTCCEEEEEESCC----SCEEEEEECSSCTTEEEEEETTSC--EEEEETTTTEEEEEE
T ss_pred             --CCCCEEEEecCCCEEEEEEchhceEeeeecCCC----CcEEEEEECCCCCCEEEEEeCCCe--EEEEEeecCeEEEEe
Confidence              012345888889999999987555 44555787    4677899999 888 555444443  344443221 11111


Q ss_pred             ---eee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----------------------------CCC
Q psy682          152 ---RVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----------------------------HPN  197 (330)
Q Consensus       152 ---~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----------------------------H~d  197 (330)
                         ..+   ..+++|+||+++|++ |+.|++|++ |++.+++....+..                            |.+
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGEKIMS-CGMDHSLKL-WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSSEEEE-EETTSCEEE-EESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             cccccccCceeEEEECCCCCEEEE-ecCCCCEEE-EECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence               122   358889999999554 557999999 99998887665554                            777


Q ss_pred             cE--EE--eHHHHHhhhccCCCcEEEEcc-cC--------------ceeeecCCCCCCCCCcEEEeCCC--ccEEEEcc-
Q psy682          198 RL--FS--SISLAWKNCQRDTSDVKVHTT-FG--------------DLLRSLDPPSGFASPESVVMSRE--GVIVVNYE-  255 (330)
Q Consensus       198 ~V--ia--St~~lW~~SgS~Dgtvkl~~~-~G--------------~ll~tL~~h~~~~~v~~v~fS~d--G~~l~s~~-  255 (330)
                      .|  ++  ....+   +|+.||+|++|+. ++              .++.++.+|..  .|.+++|+||  |++|++++ 
T Consensus       233 ~v~~~~~~~~~l~---~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          233 YVDCVRWLGDLIL---SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             CCCEEEEETTEEE---EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECT
T ss_pred             eEEEEEEcCCEEE---EEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEec
Confidence            76  21  23333   8999999999975 33              45889999988  8999999999  99999985 


Q ss_pred             CCeEEEEeeCC
Q psy682          256 RGHIAAFTMNG  266 (330)
Q Consensus       256 ~~~~~~~s~nG  266 (330)
                      ++.+++|.++.
T Consensus       308 dg~i~vwd~~~  318 (366)
T 3k26_A          308 VGKLYVWDLEV  318 (366)
T ss_dssp             TSCEEEEECCS
T ss_pred             CCcEEEEECCC
Confidence            88999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.81  E-value=1e-19  Score=175.14  Aligned_cols=219  Identities=11%  Similarity=0.087  Sum_probs=145.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCC--------Cc---------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQ--------KY---------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg--------~~---------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      |+|+.||+|+||++.+++.+.++.+|...|.++++++.-        ..         ..+..+.+|.+.+..+.|+|++
T Consensus       163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence            589999999999999999999999999999998886521        11         1223456788888888888888


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccCCCc-e-eccCCCCCC
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTLDPI-L-THPTSNNNA  136 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~D~~-l-~~~s~~~~~  136 (330)
                      ..+                 ++++.|+.|++|+.....     +.....|.    ..+.++.|+|+.. + ++++++.+.
T Consensus       243 ~~l-----------------~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~----~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          243 RHL-----------------ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             SEE-----------------EEEETTSCEEEEESSCCSSCSCCSEEECCCS----SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             Cee-----------------eeeeccccceEEeeccccccceeeeeecccC----CceeeeeeCCCcccEEEEEeecCCC
Confidence            874                 888889999999986543     23334565    4677899999876 3 332222333


Q ss_pred             CcceeccCCC-Cccceeee--eeEEEEecCCCeEEEe-eccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHH
Q psy682          137 PVPKRHLGDN-FSQKLRVR--HNCFVTTVDSRFLLAC-GFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLA  206 (330)
Q Consensus       137 ~~~~~~l~~~-~~~~~~~~--~~~~~~spDg~~i~as-g~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~l  206 (330)
                      .+..|.+... ....+..+  ..+..++|+++.++++ |+.|++|++ |++.+++++.++.||.+.|.  + +   ...+
T Consensus       302 ~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i-wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          302 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI-WKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            3444544221 11112222  2467789999987654 668999999 99999999999999999992  2 2   3444


Q ss_pred             HhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682          207 WKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                         |||.|||||||+. +.+..+..+.+..  .+....|..
T Consensus       381 ---S~s~D~tvriWdv~~~~~~~~~~~~~~--~~~~~s~~~  416 (420)
T 4gga_A          381 ---SAAADETLRLWRCFELDPARRREREKA--SAAKSSLIH  416 (420)
T ss_dssp             ---EEETTTEEEEECCSCSSCC-------------------
T ss_pred             ---EEecCCeEEEEECCCCCccchhhhccC--CccccccCC
Confidence               9999999999986 4556666666555  333334433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.81  E-value=1.7e-19  Score=163.46  Aligned_cols=197  Identities=10%  Similarity=0.073  Sum_probs=137.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-----------------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-----------------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-----------------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      |||+.||+|++|++.+|+.+.++.+|...+.++++.++.-.                 ..+....+|...+..+.|++++
T Consensus        83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            58999999999999999999999999999988777553111                 1123355788888888888888


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-ee-ccCCCCCC
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LT-HPTSNNNA  136 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~-~~s~~~~~  136 (330)
                      ..+                 ++++.|++|++|+...+...     ....|.    ..+..+.++++.. +. .++++...
T Consensus       163 ~~l-----------------~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          163 RHL-----------------ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ----GAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             SEE-----------------EEEETTSCEEEEESSCBTTBSCCSEEECCCC----SCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             CEE-----------------EEEecCcceeEEECCCCcccccceeeecccC----CceEEEEecCCCCcEEEEEecCCCC
Confidence            864                 88888999999998654322     122333    3556778888776 32 22232222


Q ss_pred             CcceeccCCCCccceeee---eeEEEEecCCCeEEE-eeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHH
Q psy682          137 PVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLA-CGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLA  206 (330)
Q Consensus       137 ~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~a-sg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~l  206 (330)
                      .+..+............+   ..+..++|+++.+++ +|+.|++|++ |++.++++++++.||.+.|.  + +   ...+
T Consensus       222 ~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i-wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          222 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI-WKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE-EETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEE-EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            233343322111111111   246778999988665 4678999999 99999999999999999982  1 2   3444


Q ss_pred             HhhhccCCCcEEEEcc
Q psy682          207 WKNCQRDTSDVKVHTT  222 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~~  222 (330)
                         |||.||+||||+.
T Consensus       301 ---S~s~D~~v~iWd~  313 (318)
T 4ggc_A          301 ---SAAADETLRLWRC  313 (318)
T ss_dssp             ---EEETTTEEEEECC
T ss_pred             ---EEecCCeEEEEEC
Confidence               9999999999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.81  E-value=9.1e-20  Score=171.05  Aligned_cols=227  Identities=11%  Similarity=0.002  Sum_probs=161.7

Q ss_pred             ccceeecCCCceeEEEeCCCCCc-----------------C------cceeeeecCccEEEEEeCCC----C---CeeEe
Q psy682           19 LLYAFPSCDSSVRSLALSHDQKY-----------------S------PMMFSTVLDDVCMSLKFPSN----S---PICHV   68 (330)
Q Consensus        19 ~l~tl~gH~~~V~svafSpdg~~-----------------~------~l~~~~~~~d~~~~v~Fs~~----~---~v~~~   68 (330)
                      ...++.+|.+.|++|+|+| ..+                 .      .+....+|...|..+.|+|+    +   ..   
T Consensus         8 ~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~---   83 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL---   83 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE---
T ss_pred             hhhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE---
Confidence            4556889999999999999 222                 1      23334467777777777777    6   55   


Q ss_pred             eeccceeccCCcEEEEEcCCcceEEEeCCCCCC------cccCCCCCCCC-CCCCCCcccc----CCCce--eccCCCCC
Q psy682           69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------SIQSPSYAETP-GSPPGNLPLT----LDPIL--THPTSNNN  135 (330)
Q Consensus        69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~------~~~~~~h~~~~-~~~~~~l~fs----~D~~l--~~~s~~~~  135 (330)
                                    +++++.+++|++|+.+...      .....+|.... ...+.++.|+    ||+.+  ++++.++.
T Consensus        84 --------------l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  149 (397)
T 1sq9_A           84 --------------VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT  149 (397)
T ss_dssp             --------------EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred             --------------EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc
Confidence                          4778889999999987666      55556773100 1467789999    99985  43333333


Q ss_pred             CCcceeccCC-------CCcc-----ceee----------eeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682          136 APVPKRHLGD-------NFSQ-----KLRV----------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       136 ~~~~~~~l~~-------~~~~-----~~~~----------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~  193 (330)
                        +..|.+..       ....     ++..          ...+++++||+ + +++|+.|++|++ |++.+++.+..+.
T Consensus       150 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~i~i-~d~~~~~~~~~~~  224 (397)
T 1sq9_A          150 --TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IATGFNNGTVQI-SELSTLRPLYNFE  224 (397)
T ss_dssp             --EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EEEECTTSEEEE-EETTTTEEEEEEE
T ss_pred             --EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EEEEeCCCcEEE-EECCCCceeEEEe
Confidence              33333322       1112     3322          13589999999 6 666778999999 9999999999998


Q ss_pred             C---C---CCcE--E--Ee--HHHHHhhhccCC---CcEEEEcc-cCceeeecCC-------------CCCCCCCcEEEe
Q psy682          194 D---H---PNRL--F--SS--ISLAWKNCQRDT---SDVKVHTT-FGDLLRSLDP-------------PSGFASPESVVM  244 (330)
Q Consensus       194 g---H---~d~V--i--aS--t~~lW~~SgS~D---gtvkl~~~-~G~ll~tL~~-------------h~~~~~v~~v~f  244 (330)
                      +   |   ...|  +  ..  ...+   +|+.|   |+|++|+. +++.++++.+             |.+  .|.+++|
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~~~l~---~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~  299 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQGSLLA---IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSF  299 (397)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEE---EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEE
T ss_pred             ccccccccCCccceEEECCCCCEEE---EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEE
Confidence            8   8   8777  2  11  3333   88999   99999975 7999999999             888  9999999


Q ss_pred             CCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682          245 SREGVIVVNYE-RGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       245 S~dG~~l~s~~-~~~~~~~s~-nG~~las~~  273 (330)
                      +|||+.|++++ ++.+++|.+ +|+.+..+.
T Consensus       300 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          300 NDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            99999999995 889999987 466666665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=7.7e-20  Score=168.95  Aligned_cols=198  Identities=11%  Similarity=-0.043  Sum_probs=140.8

Q ss_pred             ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN   96 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~   96 (330)
                      |+++.++.+|.+.|++++|||||++                                         +|+++.|++|++|+
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~-----------------------------------------l~~~~~dg~i~iw~   39 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKR-----------------------------------------LATCSSDKTIKIFE   39 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSE-----------------------------------------EEEEETTSCEEEEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCCE-----------------------------------------EEEEECCCcEEEEe
Confidence            5677889999999999999998877                                         47778889999999


Q ss_pred             CCCC---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC-Cccceeee---eeEEEEecC--C
Q psy682           97 PDYA---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN-FSQKLRVR---HNCFVTTVD--S  164 (330)
Q Consensus        97 ~~~~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~-~~~~~~~~---~~~~~~spD--g  164 (330)
                      .+..   ....+.+|.    ..+.++.|+++  +. +++++.++...+|....+.. ....+..+   ..+++|+|+  +
T Consensus        40 ~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           40 VEGETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             EETTEEEEEEEECCCS----SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             cCCCcceeeeEecCCC----CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence            8632   244556887    46778999987  66 66545555444443332210 11222222   258899999  8


Q ss_pred             CeEEEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee---------------HHHHHhhhccCCCcEEEEccc
Q psy682          165 RFLLACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS---------------ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       165 ~~i~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS---------------t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      ++ +++|+.|++|++ |++.+++  ....+.+|...|.    ..               ...+   +|+.||+|++|+..
T Consensus       116 ~~-l~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~dg~i~i~d~~  190 (379)
T 3jrp_A          116 PL-LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYN  190 (379)
T ss_dssp             SE-EEEEETTSEEEE-EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE---EEETTSCEEEEEEE
T ss_pred             CE-EEEecCCCcEEE-EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE---EEeCCCeEEEEEec
Confidence            88 555668999999 9998763  3446678888772    11               1222   89999999999763


Q ss_pred             -C----ceeeecCCCCCCCCCcEEEeCCC---ccEEEEcc-CCeEEEEeeCC
Q psy682          224 -G----DLLRSLDPPSGFASPESVVMSRE---GVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       224 -G----~ll~tL~~h~~~~~v~~v~fS~d---G~~l~s~~-~~~~~~~s~nG  266 (330)
                       +    .++.++.+|.+  .|.+++|+|+   |+.|++++ ++.+.+|..+.
T Consensus       191 ~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          191 SDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             TTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence             3    46789999998  9999999999   89999985 77788887665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=165.18  Aligned_cols=246  Identities=9%  Similarity=0.086  Sum_probs=168.5

Q ss_pred             cEEEeecccccccceeecCCCceeEEEeCCC---CCc----------------C-c--c-eeeeecCccEEEEEeCCCCC
Q psy682            8 IVEVWRTFNLALLYAFPSCDSSVRSLALSHD---QKY----------------S-P--M-MFSTVLDDVCMSLKFPSNSP   64 (330)
Q Consensus         8 ~V~lW~~~~g~~l~tl~gH~~~V~svafSpd---g~~----------------~-~--l-~~~~~~~d~~~~v~Fs~~~~   64 (330)
                      .+..|+....+.+..+.+|.+.|++|+|+||   |++                . .  + ....+|...|..++|+|+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC
Confidence            3445666667788889999999999999999   465                1 1  1 23457888888888888888


Q ss_pred             eeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccc--cCCCc-eeccCCCCCCCccee
Q psy682           65 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL--TLDPI-LTHPTSNNNAPVPKR  141 (330)
Q Consensus        65 v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f--s~D~~-l~~~s~~~~~~~~~~  141 (330)
                      .+                 ++++.|++|++|+.+........+|.    ..+.++.|  ++|+. +++++.++.  +..|
T Consensus       100 ~l-----------------~s~~~dg~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg~--i~vw  156 (368)
T 3mmy_A          100 KV-----------------FTASCDKTAKMWDLSSNQAIQIAQHD----APVKTIHWIKAPNYSCVMTGSWDKT--LKFW  156 (368)
T ss_dssp             EE-----------------EEEETTSEEEEEETTTTEEEEEEECS----SCEEEEEEEECSSCEEEEEEETTSE--EEEE
T ss_pred             EE-----------------EEEcCCCcEEEEEcCCCCceeecccc----CceEEEEEEeCCCCCEEEEccCCCc--EEEE
Confidence            65                 78888999999999888877777887    46778999  99988 665444443  3344


Q ss_pred             ccC-CCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEEE--e------HHHHHh
Q psy682          142 HLG-DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLFS--S------ISLAWK  208 (330)
Q Consensus       142 ~l~-~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Via--S------t~~lW~  208 (330)
                      .+. +.....+..+..++++.+.+..+++ +..|+.+++ |++....    .......|...+++  .      ...+  
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  232 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVV-ATAERGLIV-YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA--  232 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEE-EEGGGCEEE-EECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE--
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEE-EeCCCcEEE-EEeccccchhhhccccccCCCceEEEcccCCCCCCeEE--
Confidence            432 2223344545555555555666454 457999999 9997542    22223334333321  1      1133  


Q ss_pred             hhccCCCcEEEEccc-C---ceeeecCCCCCCC----------CCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeec
Q psy682          209 NCQRDTSDVKVHTTF-G---DLLRSLDPPSGFA----------SPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHE  272 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~~-G---~ll~tL~~h~~~~----------~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~  272 (330)
                       +|+.||+|++|+.+ +   +.+.++.+|....          .|.+++|+|||+.||+++ ++.+++|..+ |+.+..+
T Consensus       233 -~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 -LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             -EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             -EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence             89999999999864 3   6788888886511          599999999999999995 8889999866 6777776


Q ss_pred             cCc-cccccc
Q psy682          273 SHN-DNLQEL  281 (330)
Q Consensus       273 ~~~-~dVkEL  281 (330)
                      ..+ ..+..+
T Consensus       312 ~~~~~~v~~~  321 (368)
T 3mmy_A          312 EQLDQPISAC  321 (368)
T ss_dssp             CCCSSCEEEE
T ss_pred             cCCCCCceEE
Confidence            643 334443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=163.66  Aligned_cols=214  Identities=8%  Similarity=0.041  Sum_probs=146.4

Q ss_pred             ceeecCCCceeEEEeCCCCCc----C-------cce-----------e-eeecCccEEEEEeCCC---CCeeEeeeccce
Q psy682           21 YAFPSCDSSVRSLALSHDQKY----S-------PMM-----------F-STVLDDVCMSLKFPSN---SPICHVTANTYV   74 (330)
Q Consensus        21 ~tl~gH~~~V~svafSpdg~~----~-------~l~-----------~-~~~~~d~~~~v~Fs~~---~~v~~~~~~~~~   74 (330)
                      ..+++|...|.+++|+|||..    .       .+.           . ..+|.+.|..+.|+|+   +..         
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------   82 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY---------   82 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC---------
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce---------
Confidence            456899999999999999864    0       000           0 1155666666777766   354         


Q ss_pred             eccCCcEEEEEcCCcceEEEeCCCCCC--cccCCCCCCCCCCCCCCc------cccCCCc-eeccCCCCCCCcceeccCC
Q psy682           75 TLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNL------PLTLDPI-LTHPTSNNNAPVPKRHLGD  145 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~~tv~lW~~~~~~--~~~~~~h~~~~~~~~~~l------~fs~D~~-l~~~s~~~~~~~~~~~l~~  145 (330)
                              +++++.+++|++|+.+...  .....+|.+    .+.++      .|++|+. +++++.++.  +..|.+..
T Consensus        83 --------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~s~~~~~l~~~~~d~~--i~vwd~~~  148 (357)
T 3i2n_A           83 --------LATGDFGGNLHIWNLEAPEMPVYSVKGHKE----IINAIDGIGGLGIGEGAPEIVTGSRDGT--VKVWDPRQ  148 (357)
T ss_dssp             --------EEEEETTSCEEEECTTSCSSCSEEECCCSS----CEEEEEEESGGGCC-CCCEEEEEETTSC--EEEECTTS
T ss_pred             --------EEEecCCCeEEEEeCCCCCccEEEEEeccc----ceEEEeeccccccCCCccEEEEEeCCCe--EEEEeCCC
Confidence                    4888889999999997654  556668875    45555      7899998 555444443  33444322


Q ss_pred             C--Cccceee-------eeeEEE----EecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-----H
Q psy682          146 N--FSQKLRV-------RHNCFV----TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-----I  203 (330)
Q Consensus       146 ~--~~~~~~~-------~~~~~~----~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-----t  203 (330)
                      .  ....+..       ...+++    ++||+++ +++|+.|++|++ |++.++++.. ..+|...|    +..     .
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i-~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  225 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKL-FDLRNMALRW-ETNIKNGVCSLEFDRKDISMN  225 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEE-EETTTTEEEE-EEECSSCEEEEEESCSSSSCC
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEE-EECccCceee-ecCCCCceEEEEcCCCCCCCC
Confidence            1  2222221       123455    6799998 555668999999 9998887743 46777776    221     2


Q ss_pred             HHHHhhhccCCCcEEEEcc-cCceeeecC-----CCCCCCCCcEEEeCCCcc-EEEEcc-CCeEEEEeeC
Q psy682          204 SLAWKNCQRDTSDVKVHTT-FGDLLRSLD-----PPSGFASPESVVMSREGV-IVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       204 ~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~-----~h~~~~~v~~v~fS~dG~-~l~s~~-~~~~~~~s~n  265 (330)
                      ..+   +|+.||+|++|+. +++.++++.     +|..  .|.+++|+|+|. ++++++ ++.+++|.++
T Consensus       226 ~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          226 KLV---ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEE---EEESTTEEEEEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             EEE---EECCCCeEEEEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            223   8999999999975 566666665     8988  999999999999 788875 8899999876

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.7e-19  Score=172.06  Aligned_cols=211  Identities=9%  Similarity=-0.050  Sum_probs=146.6

Q ss_pred             CcccCCCcEEEeecc--cccccceee--cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceec
Q psy682            1 MSGGDKGIVEVWRTF--NLALLYAFP--SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~--~g~~l~tl~--gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~   76 (330)
                      |+|+.||+|++|++.  +|+.+..+.  +|...|.+++|+|||+.                                   
T Consensus       119 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----------------------------------  163 (450)
T 2vdu_B          119 ACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT-----------------------------------  163 (450)
T ss_dssp             EEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE-----------------------------------
T ss_pred             EEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE-----------------------------------
Confidence            478899999999998  888888887  66788999999998877                                   


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCC---Cc-eeccCCCCCCCcceeccCCCC
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLD---PI-LTHPTSNNNAPVPKRHLGDNF  147 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D---~~-l~~~s~~~~~~~~~~~l~~~~  147 (330)
                            +++++.++.|++|+.......     ...+|.    ..+.++.|+||   +. +++++.++...+|....+...
T Consensus       164 ------l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~  233 (450)
T 2vdu_B          164 ------VIIADKFGDVYSIDINSIPEEKFTQEPILGHV----SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV  233 (450)
T ss_dssp             ------EEEEETTSEEEEEETTSCCCSSCCCCCSEECS----SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred             ------EEEEeCCCcEEEEecCCcccccccceeeeccc----CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence                  366677888999987654433     455786    46778999999   86 665444443333332222211


Q ss_pred             ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-------------------------CcE
Q psy682          148 SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-------------------------NRL  199 (330)
Q Consensus       148 ~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-------------------------d~V  199 (330)
                      ...+.+|   ..+++|+ |+++|+ +|+.|++|++ |++.+|++++.+..|.                         ..|
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l~-s~~~d~~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLLL-SAGGDDKIFA-WDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEEE-EEESSSEEEE-EETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeecCCCCceEEEEEC-CCCEEE-EEeCCCeEEE-EECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            1112233   2588899 999955 5568999999 9999998877765331                         112


Q ss_pred             --EE--e--HHHHHhhhcc-CCCcEEEEcc---cC---ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-------CCeE
Q psy682          200 --FS--S--ISLAWKNCQR-DTSDVKVHTT---FG---DLLRSLDPPSGFASPESVVMSREGVIVVNYE-------RGHI  259 (330)
Q Consensus       200 --ia--S--t~~lW~~SgS-~Dgtvkl~~~---~G---~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-------~~~~  259 (330)
                        ++  .  ...+   +++ .|++|+||+.   ++   +++.++.+| +  .|.+++|+|++.+++.++       +..+
T Consensus       311 ~~i~~~~~~~~l~---~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~--~v~~~~~~~~~~~v~~~~~~~~~~~~~~i  384 (450)
T 2vdu_B          311 SKIIKSKNLPFVA---FFVEATKCIIILEMSEKQKGDLALKQIITFP-Y--NVISLSAHNDEFQVTLDNKESSGVQKNFA  384 (450)
T ss_dssp             EEEEECSSSSEEE---EEETTCSEEEEEEECSSSTTCEEEEEEEECS-S--CEEEEEEETTEEEEEECCTTCCSSCCCSE
T ss_pred             EEEEEeCCCCEEE---EEECCCCeEEEEEeccCCCCceeeccEeccC-C--ceEEEEecCCcEEEEEecccCCCCCCcce
Confidence              11  1  1112   555 8999999977   45   778889988 5  799999999776666553       3446


Q ss_pred             EEEeeC
Q psy682          260 AAFTMN  265 (330)
Q Consensus       260 ~~~s~n  265 (330)
                      .+|..+
T Consensus       385 ~v~~~~  390 (450)
T 2vdu_B          385 KFIEYN  390 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.79  E-value=4e-19  Score=171.40  Aligned_cols=242  Identities=16%  Similarity=0.147  Sum_probs=152.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCC--CCCcCcceeeeecCc-cEEEEEeCCCCCe-----------e
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH--DQKYSPMMFSTVLDD-VCMSLKFPSNSPI-----------C   66 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp--dg~~~~l~~~~~~~d-~~~~v~Fs~~~~v-----------~   66 (330)
                      |+|+.||+|++|++.+|+.+.++.+|.+.|.+++|+|  ++++    +.++..| .+....+......           +
T Consensus       177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~----l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY----IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE----EEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE----EEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence            5899999999999999999999999999999999994  5554    3332222 2322222211110           0


Q ss_pred             ---------Eee---eccc--eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682           67 ---------HVT---ANTY--VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHP  130 (330)
Q Consensus        67 ---------~~~---~~~~--~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~  130 (330)
                               .+.   .+..  ..+.+++-.+++++.|++|++|+..... +....+|.    ..+.++.|+||+. ++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~sg  328 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT----DRIYSTIYDHERKRCISA  328 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEEETTTTEEEEE
T ss_pred             eeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----CCEEEEEEcCCCCEEEEE
Confidence                     000   0000  1233344456888889999999986554 45556786    4677899999998 6654


Q ss_pred             CCCCCCCcceeccC-CCCccceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe
Q psy682          131 TSNNNAPVPKRHLG-DNFSQKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS  202 (330)
Q Consensus       131 s~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS  202 (330)
                      +.++..  ..+.+. +....++..|.   .+++++  +++ +++|+.|++||+ |++.+++..... .|...+    +..
T Consensus       329 ~~dg~i--~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~v~v-wd~~~~~~~~~~-~~~~~~~~~~~~~  401 (464)
T 3v7d_B          329 SMDTTI--RIWDLENGELMYTLQGHTALVGLLRLS--DKF-LVSAAADGSIRG-WDANDYSRKFSY-HHTNLSAITTFYV  401 (464)
T ss_dssp             ETTSCE--EEEETTTTEEEEEECCCSSCEEEEEEC--SSE-EEEEETTSEEEE-EETTTCCEEEEE-ECTTCCCEEEEEE
T ss_pred             eCCCcE--EEEECCCCcEEEEEeCCCCcEEEEEEc--CCE-EEEEeCCCcEEE-EECCCCceeeee-cCCCCccEEEEEe
Confidence            444433  344432 22223344443   355554  677 555668999999 999876654333 233322    222


Q ss_pred             --HHHHHhhhccCCCcEEEEcc-cCceeee-cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT-FGDLLRS-LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~-~G~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~  264 (330)
                        ...+   +|+ ||+|+||+. +|+++++ +.+|.+  .|.+|+|+ ++.+++++ +++...+|..
T Consensus       402 ~~~~l~---~~~-dg~i~iwd~~~g~~~~~~~~~~~~--~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          402 SDNILV---SGS-ENQFNIYNLRSGKLVHANILKDAD--QIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             CSSEEE---EEE-TTEEEEEETTTCCEEESCTTTTCS--EEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCCEEE---Eec-CCeEEEEECCCCcEEehhhccCCC--cEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence              3333   677 999999975 7999987 777777  99999998 34444444 4665555543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=168.99  Aligned_cols=208  Identities=10%  Similarity=0.035  Sum_probs=153.1

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVT   83 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~   83 (330)
                      .++++++|++..++....+.+|.+.|.+++|+| ||++                                         +
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-----------------------------------------l   59 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY-----------------------------------------M   59 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE-----------------------------------------E
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE-----------------------------------------E
Confidence            356789999998899999999999999999999 8877                                         4


Q ss_pred             EEcCCcceEEEeCCCCCCcccCC--------------CCCCCCCCCCCCccccC-CCc-eeccCCCCCCCcceeccCCC-
Q psy682           84 VTANHQFAINRWNPDYAASIQSP--------------SYAETPGSPPGNLPLTL-DPI-LTHPTSNNNAPVPKRHLGDN-  146 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~--------------~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~~~~~~~~l~~~-  146 (330)
                      |+++.|++|++|+.+........              +|.    ..+.++.|+| ++. +++++.++  .+..|.+... 
T Consensus        60 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~  133 (408)
T 4a11_B           60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR----YSVETVQWYPHDTGMFTSSSFDK--TLKVWDTNTLQ  133 (408)
T ss_dssp             EEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS----SCEEEEEECTTCTTCEEEEETTS--EEEEEETTTTE
T ss_pred             EEEcCCCeEEEEECCCCcccceEeccccccccccccccCC----CcEEEEEEccCCCcEEEEEeCCC--eEEEeeCCCCc
Confidence            77888899999999866543332              465    4678899999 665 55433333  3344443221 


Q ss_pred             Ccccee--eeeeEEEEecCC---CeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e---HHHHHhhhccCC
Q psy682          147 FSQKLR--VRHNCFVTTVDS---RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S---ISLAWKNCQRDT  214 (330)
Q Consensus       147 ~~~~~~--~~~~~~~~spDg---~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S---t~~lW~~SgS~D  214 (330)
                      ....+.  ....++.++|++   ++ +++|+.|+.|++ |++.+++.+..+.+|...|.  +  .   .+.+   +|+.|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~---~~~~d  208 (408)
T 4a11_B          134 TADVFNFEETVYSHHMSPVSTKHCL-VAVGTRGPKVQL-CDLKSGSCSHILQGHRQEILAVSWSPRYDYILA---TASAD  208 (408)
T ss_dssp             EEEEEECSSCEEEEEECSSCSSCCE-EEEEESSSSEEE-EESSSSCCCEEECCCCSCEEEEEECSSCTTEEE---EEETT
T ss_pred             cceeccCCCceeeeEeecCCCCCcE-EEEEcCCCeEEE-EeCCCcceeeeecCCCCcEEEEEECCCCCcEEE---EEcCC
Confidence            111111  112467777754   46 556678999999 99999999999999999882  2  2   2344   89999


Q ss_pred             CcEEEEcc-cCc-eeeec---------------CCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          215 SDVKVHTT-FGD-LLRSL---------------DPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       215 gtvkl~~~-~G~-ll~tL---------------~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      |+|++|+. +++ .+..+               .+|.+  .|.+++|+|+|+.|++++ ++.++.|.++.
T Consensus       209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CcEEEEECCCCCcccccccccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            99999976 333 55555               56777  899999999999999985 88999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=1.7e-18  Score=168.39  Aligned_cols=250  Identities=11%  Similarity=-0.002  Sum_probs=166.1

Q ss_pred             CCC----cEEEeec--cccccc--ceeecCCCceeEEEeCC---------------CCCc--------------------
Q psy682            5 DKG----IVEVWRT--FNLALL--YAFPSCDSSVRSLALSH---------------DQKY--------------------   41 (330)
Q Consensus         5 ~d~----~V~lW~~--~~g~~l--~tl~gH~~~V~svafSp---------------dg~~--------------------   41 (330)
                      .||    +|||||+  .+|+++  .++.+|...++.+++++               +.++                    
T Consensus        87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~  166 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY  166 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred             CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence            567    9999999  999988  56999999888777765               2121                    


Q ss_pred             --CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC-CcceEEEeCCCCCCcccCCCCCCCCCCCCCC
Q psy682           42 --SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN-HQFAINRWNPDYAASIQSPSYAETPGSPPGN  118 (330)
Q Consensus        42 --~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~  118 (330)
                        .....+.+|.+.+..++|||||+.+               +.++.+ ...+|++|+..++......+|.+    .+.+
T Consensus       167 ~g~~~~~l~~~~~~v~~~~~Spdg~~l---------------a~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~  227 (415)
T 2hqs_A          167 DGYNQFVVHRSPQPLMSPAWSPDGSKL---------------AYVTFESGRSALVIQTLANGAVRQVASFPR----HNGA  227 (415)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEE---------------EEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEE
T ss_pred             CCCCCEEEeCCCCcceeeEEcCCCCEE---------------EEEEecCCCcEEEEEECCCCcEEEeecCCC----cccC
Confidence              1122345677788889999999875               223322 23589999998877766667753    5678


Q ss_pred             ccccCCCc-ee-ccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCCeEEEeeccCC--eEEEeeeccccccccc
Q psy682          119 LPLTLDPI-LT-HPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEG  191 (330)
Q Consensus       119 l~fs~D~~-l~-~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~  191 (330)
                      +.|+||++ ++ +.+.++...++.+.+...-...+..+   ..+++|+|||++|+.++..++  .|.+ |++.++++. .
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~-~d~~~~~~~-~  305 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK-VNINGGAPQ-R  305 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE-EETTSSCCE-E
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE-EECCCCCEE-E
Confidence            99999999 55 32334444455555432111222222   257889999999777665566  4555 788766643 4


Q ss_pred             ccCCCCcEE---Ee---HHHHHhhhcc-C--CCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC---e
Q psy682          192 KFDHPNRLF---SS---ISLAWKNCQR-D--TSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG---H  258 (330)
Q Consensus       192 l~gH~d~Vi---aS---t~~lW~~SgS-~--Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~---~  258 (330)
                      +..|...+.   .|   ..++   .++ .  +++|.+|+..+..++.|..| .  .+.+++|||||+.|++++ ++   .
T Consensus       306 l~~~~~~~~~~~~spdG~~l~---~~~~~~g~~~i~~~d~~~~~~~~l~~~-~--~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          306 ITWEGSQNQDADVSSDGKFMV---MVSSNGGQQHIAKQDLATGGVQVLSST-F--LDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             CCCSSSEEEEEEECTTSSEEE---EEEECSSCEEEEEEETTTCCEEECCCS-S--SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             EecCCCcccCeEECCCCCEEE---EEECcCCceEEEEEECCCCCEEEecCC-C--CcCCeEEcCCCCEEEEEEcCCCccE
Confidence            555655551   11   1111   233 3  35888898765445677776 3  699999999999998874 33   6


Q ss_pred             EEEEeeCCceeeeccCc-cccccc
Q psy682          259 IAAFTMNGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       259 ~~~~s~nG~~las~~~~-~dVkEL  281 (330)
                      |..|..+|+.+..+..+ ..|+++
T Consensus       380 l~~~d~~g~~~~~l~~~~~~v~~~  403 (415)
T 2hqs_A          380 LNLVSTDGRFKARLPATDGQVKFP  403 (415)
T ss_dssp             EEEEETTSCCEEECCCSSSEEEEE
T ss_pred             EEEEECCCCcEEEeeCCCCCCcCC
Confidence            99999999988888754 556654

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=99.78  E-value=1.3e-20  Score=184.83  Aligned_cols=105  Identities=51%  Similarity=0.946  Sum_probs=89.0

Q ss_pred             CeEEEeeccCCe------EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCC
Q psy682          165 RFLLACGFWDNS------FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA  237 (330)
Q Consensus       165 ~~i~asg~~D~t------irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~  237 (330)
                      ++.+.++|++..      +|+ |+....-+++.+-++|.|+++.|....|+.+. .                        
T Consensus       223 ~f~ygshyS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~-~------------------------  277 (414)
T 1t77_A          223 KFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-R------------------------  277 (414)
T ss_dssp             CCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-H------------------------
T ss_pred             CcccCCCCCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHh-c------------------------
Confidence            455666665543      466 88766677888999999999999999998421 1                        


Q ss_pred             CCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCC
Q psy682          238 SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPW  317 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~w  317 (330)
                                                          ...++|||||||||+||||+|.|+|+||++|+|+.|+||+||||
T Consensus       278 ------------------------------------~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP~W  321 (414)
T 1t77_A          278 ------------------------------------DTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPW  321 (414)
T ss_dssp             ------------------------------------CTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTT
T ss_pred             ------------------------------------cCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCCCC
Confidence                                                13579999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcC
Q psy682          318 ASSPEQFVRINRM  330 (330)
Q Consensus       318 a~s~~~fi~~~r~  330 (330)
                      |++|++||++||+
T Consensus       322 a~sp~~FI~~~R~  334 (414)
T 1t77_A          322 AKTSEEFVHINRL  334 (414)
T ss_dssp             CSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.78  E-value=2.8e-18  Score=157.32  Aligned_cols=232  Identities=9%  Similarity=-0.010  Sum_probs=162.3

Q ss_pred             ceeecCCCceeEEEeCCCCCc------------------C---cceeeeecCccEEEEEeCCCCC-eeEeeeccceeccC
Q psy682           21 YAFPSCDSSVRSLALSHDQKY------------------S---PMMFSTVLDDVCMSLKFPSNSP-ICHVTANTYVTLHM   78 (330)
Q Consensus        21 ~tl~gH~~~V~svafSpdg~~------------------~---~l~~~~~~~d~~~~v~Fs~~~~-v~~~~~~~~~~~~~   78 (330)
                      ....+|.+.|++++|+|||++                  .   ++....+|...|..++|+|++. .+            
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------   72 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI------------   72 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE------------
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEE------------
Confidence            345699999999999999987                  1   1222346777778888888777 64            


Q ss_pred             CcEEEEEcCCcceEEEeCC-CCCCcccCCC--CCCCCCCCCCCccccCCCc-eeccCCCCCCCcceecc---------CC
Q psy682           79 PSVVTVTANHQFAINRWNP-DYAASIQSPS--YAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL---------GD  145 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~--h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l---------~~  145 (330)
                           ++++.+++|++|+. +........+  |.    ..+.++.|+| +. +++++.++...+|....         +.
T Consensus        73 -----~~~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (342)
T 1yfq_A           73 -----YVGTVQGEILKVDLIGSPSFQALTNNEAN----LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             -----EEEETTSCEEEECSSSSSSEEECBSCCCC----SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             -----EEEcCCCeEEEEEeccCCceEeccccCCC----CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence                 77778889999999 8888877778  87    4677899999 55 66544444333332221         11


Q ss_pred             CCccce--eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-cc--ccccccCCCCcE----EEe---HHHHHhhhccC
Q psy682          146 NFSQKL--RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LA--LQEGKFDHPNRL----FSS---ISLAWKNCQRD  213 (330)
Q Consensus       146 ~~~~~~--~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~--l~~~l~gH~d~V----iaS---t~~lW~~SgS~  213 (330)
                      + ..++  .....+++++|++   +++|+.|++|++ |++.+ ++  .......|...|    +..   ...+   +|+.
T Consensus       143 ~-~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~---~~~~  214 (342)
T 1yfq_A          143 N-SNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQW-FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA---CSSI  214 (342)
T ss_dssp             C-SSSSSSCCCEEEEEECSSE---EEEEESTTEEEE-EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE---EEET
T ss_pred             e-eeEEeeCCceEEEEecCCc---EEEEeCCCeEEE-EECCccccccceeeecCCCCceeEEEECCCCCCEEE---EEec
Confidence            1 1122  2233688899988   444568999999 99986 54  233445666666    121   1222   8999


Q ss_pred             CCcEEEEccc-C------ceeeecCCCCC-------CCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccCc--
Q psy682          214 TSDVKVHTTF-G------DLLRSLDPPSG-------FASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN--  275 (330)
Q Consensus       214 Dgtvkl~~~~-G------~ll~tL~~h~~-------~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~--  275 (330)
                      ||+|+||+.+ +      +.+.++++|..       ...|.+++|+|||+.|++++ ++.+++|..+ |+.+..+..+  
T Consensus       215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~  294 (342)
T 1yfq_A          215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE  294 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence            9999999652 3      88889998853       23899999999999999985 8899999876 8888887753  


Q ss_pred             ccccccc
Q psy682          276 DNLQELI  282 (330)
Q Consensus       276 ~dVkELi  282 (330)
                      ..|..+.
T Consensus       295 ~~v~~~~  301 (342)
T 1yfq_A          295 DSVVKIA  301 (342)
T ss_dssp             SEEEEEE
T ss_pred             CCceEec
Confidence            4455554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.77  E-value=1.9e-18  Score=165.04  Aligned_cols=208  Identities=12%  Similarity=0.131  Sum_probs=141.7

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCC--------CCc---------CcceeeeecCccEEEEEeCCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHD--------QKY---------SPMMFSTVLDDVCMSLKFPSNS   63 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpd--------g~~---------~~l~~~~~~~d~~~~v~Fs~~~   63 (330)
                      |+|+.||+|++|++.+++.+.++.+|...|.+++|+++        |.+         .......+|...+..++|+|++
T Consensus       150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG  229 (401)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence            47889999999999999999999999999999999542        111         1223455788889999999998


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCC-CCCCcce
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-NNAPVPK  140 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~-~~~~~~~  140 (330)
                      +.+                 ++++.|++|++|+..... .....+|.    ..+.++.|+||+. +++.+++ .+..+..
T Consensus       230 ~~l-----------------~s~~~d~~v~iwd~~~~~~~~~~~~~~----~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          230 LQL-----------------ASGGNDNVVQIWDARSSIPKFTKTNHN----AAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             SEE-----------------EEEETTSCEEEEETTCSSEEEEECCCS----SCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             CEE-----------------EEEeCCCeEEEccCCCCCccEEecCCc----ceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            875                 778888999999997654 34455776    4677899999886 4432221 2333444


Q ss_pred             eccCCC-Cccceeee--eeEEEEecCCCeEEEe-eccCCeEEEeeecccccccc--cccCCCCcEE--E-e---HHHHHh
Q psy682          141 RHLGDN-FSQKLRVR--HNCFVTTVDSRFLLAC-GFWDNSFREPFTTMYLALQE--GKFDHPNRLF--S-S---ISLAWK  208 (330)
Q Consensus       141 ~~l~~~-~~~~~~~~--~~~~~~spDg~~i~as-g~~D~tirl~w~~~~g~l~~--~l~gH~d~Vi--a-S---t~~lW~  208 (330)
                      +.+... ....+...  ..+++++||+++|+++ |+.|++|++ |++.++++..  .+.+|...|.  + +   ...+  
T Consensus       289 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v-~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~--  365 (401)
T 4aez_A          289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS--  365 (401)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEE-EEEETTEEEEEEEEECCSSCCCEEEECTTSSEEE--
T ss_pred             EECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEE-EecCCccceeEEEecCCCCCEEEEEECCCCCEEE--
Confidence            444221 11122211  2588899999997665 678999999 9998866544  3678988872  1 2   3333  


Q ss_pred             hhccCCCcEEEEcc-cCceeeecCCC
Q psy682          209 NCQRDTSDVKVHTT-FGDLLRSLDPP  233 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~-~G~ll~tL~~h  233 (330)
                       +|+.||+|++|+. +|+.++.+..+
T Consensus       366 -s~~~dg~i~iw~~~~~~~~~~~~~~  390 (401)
T 4aez_A          366 -TAASDENLKFWRVYDGDHVKRPIPI  390 (401)
T ss_dssp             -EECTTSEEEEEECCC----------
T ss_pred             -EEeCCCcEEEEECCCCccccccccc
Confidence             8999999999976 67777765543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.77  E-value=1.8e-18  Score=156.22  Aligned_cols=173  Identities=13%  Similarity=0.019  Sum_probs=120.5

Q ss_pred             EEEcCCcceEEEeCCCCCC-----cccCCCCCCCCCCCCCCccccC--CCc-eeccCCCCCCCcceeccCCC--------
Q psy682           83 TVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPGNLPLTL--DPI-LTHPTSNNNAPVPKRHLGDN--------  146 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~-----~~~~~~h~~~~~~~~~~l~fs~--D~~-l~~~s~~~~~~~~~~~l~~~--------  146 (330)
                      +|+++.|++|++|+.+...     ...+.+|.    ..+.++.|+|  |+. +++++.++...+|....+..        
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  101 (351)
T 3f3f_A           26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHD----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN  101 (351)
T ss_dssp             EEEEETTSEEEEEEECSSSCCEEEEEEEECCS----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred             EEEeeCCCeEEEEECCCCCCcceecceeccCC----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence            4788889999999987542     33445786    4677899999  577 66545554444443332210        


Q ss_pred             Cccceeee---eeEEEEecC--CCeEEEeeccCCeEEEeeeccccccccccc-------------CCCCcEE----E---
Q psy682          147 FSQKLRVR---HNCFVTTVD--SRFLLACGFWDNSFREPFTTMYLALQEGKF-------------DHPNRLF----S---  201 (330)
Q Consensus       147 ~~~~~~~~---~~~~~~spD--g~~i~asg~~D~tirl~w~~~~g~l~~~l~-------------gH~d~Vi----a---  201 (330)
                      ....+..+   ..+++|+|+  +++| ++|+.|++|++ |++.+++.++.+.             +|...|.    .   
T Consensus       102 ~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (351)
T 3f3f_A          102 KLCTLNDSKGSLYSVKFAPAHLGLKL-ACLGNDGILRL-YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR  179 (351)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEE-EEEETTCEEEE-EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred             eeeeecccCCceeEEEEcCCCCCcEE-EEecCCCcEEE-ecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence            11122222   257889999  9884 55568999999 9998888766554             4544441    1   


Q ss_pred             --eHHHHHhhhccCCCcEEEEcc-cCce--eeecCCCCCCCCCcEEEeCCCc----cEEEEcc-CCeEEEEeeCC
Q psy682          202 --SISLAWKNCQRDTSDVKVHTT-FGDL--LRSLDPPSGFASPESVVMSREG----VIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       202 --St~~lW~~SgS~Dgtvkl~~~-~G~l--l~tL~~h~~~~~v~~v~fS~dG----~~l~s~~-~~~~~~~s~nG  266 (330)
                        ....+   +|+.|+.+.+|.. .+++  +.++.+|.+  .|.+++|+|+|    ++|++++ ++.+++|.++.
T Consensus       180 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          180 FSPEKLA---VSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             SSCCEEE---EEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CCCcEEE---EecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence              12222   7889999988754 5654  889999998  99999999999    8898885 88999998765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.77  E-value=1.3e-17  Score=157.88  Aligned_cols=225  Identities=16%  Similarity=0.096  Sum_probs=137.1

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEe-e-eccceeccCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHV-T-ANTYVTLHMP   79 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~-~-~~~~~~~~~~   79 (330)
                      +|+.|++|+|||..+|+.+.++. |...|.+++|++++..    .  ..++.+....+....+.+.. . ......+.+.
T Consensus        76 ~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~----~--~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~  148 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIV----V--SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNG  148 (355)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEE----E--EETTEEEEEESSTTCCBSSCCEEEEEEEEEETT
T ss_pred             EECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEE----E--EEcCEEEEEECCCCceeeEEeccCCceEEEEcc
Confidence            57788999999999999999987 6679999999997533    1  22344444444433111111 0 0111123333


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc-eeccCCCCccceeeeeeEE
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-KRHLGDNFSQKLRVRHNCF  158 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~-~~~l~~~~~~~~~~~~~~~  158 (330)
                      .++.++++.+++|++|+........   +.+            .+  ..     ...-.. .+.+.++-     ....++
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~---~~~------------~~--~~-----~~~~~p~~~~~~~h~-----~~v~~~  201 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSAT---TQD------------QG--VQ-----QKAILGKGVLIKAHT-----NPIKMV  201 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC----------------------------------------CCEEECCCS-----SCEEEE
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccc---ccc------------cc--cc-----ccccCcccEEEEccC-----CceEEE
Confidence            3444458999999999996532100   000            00  00     000000 11111111     123688


Q ss_pred             EEecCCCeEEEeeccCCe-EEEeeeccccccccccc-C-CCCcEE----Ee--HHHHHhhhccCCCcEEEEccc-Cc--e
Q psy682          159 VTTVDSRFLLACGFWDNS-FREPFTTMYLALQEGKF-D-HPNRLF----SS--ISLAWKNCQRDTSDVKVHTTF-GD--L  226 (330)
Q Consensus       159 ~~spDg~~i~asg~~D~t-irl~w~~~~g~l~~~l~-g-H~d~Vi----aS--t~~lW~~SgS~Dgtvkl~~~~-G~--l  226 (330)
                      +|+|||++ +++|+.|++ ||+ |++.+|+++..+. | |.+.|.    ..  ...+   +||.||+|+||+.. +.  .
T Consensus       202 ~~s~~g~~-l~s~s~d~~~v~i-wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~---s~s~d~~v~iw~~~~~~~~~  276 (355)
T 3vu4_A          202 RLNRKSDM-VATCSQDGTIIRV-FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA---VVSDKWTLHVFEIFNDQDNK  276 (355)
T ss_dssp             EECTTSSE-EEEEETTCSEEEE-EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEE---EEETTCEEEEEESSCCSCCC
T ss_pred             EECCCCCE-EEEEeCCCCEEEE-EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEE---EEECCCEEEEEEccCCCCcc
Confidence            99999998 566678999 999 9999999999998 6 998882    22  3344   89999999999863 22  1


Q ss_pred             eeecCC------------------CC-CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682          227 LRSLDP------------------PS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       227 l~tL~~------------------h~-~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n  265 (330)
                      ...|.+                  +. .......++|+|||+.|+.+ .++.+..|.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            222222                  00 00134779999999988887 58888888654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.77  E-value=2.8e-19  Score=171.78  Aligned_cols=178  Identities=5%  Similarity=-0.099  Sum_probs=100.6

Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC------cccCCCCCCCCCCCCCCccccC--------CCc-eeccCCCCCCCcce
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA------SIQSPSYAETPGSPPGNLPLTL--------DPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~------~~~~~~h~~~~~~~~~~l~fs~--------D~~-l~~~s~~~~~~~~~  140 (330)
                      .++++.++|+++.|++|++|+.+...      +.++.||++    .++++.|+|        |++ +++++.|.+..+|.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~----~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN----FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS----CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC----ceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            34455567999999999999987654      234679984    677899987        888 66645544444443


Q ss_pred             eccCCCCccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC---------------------
Q psy682          141 RHLGDNFSQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP---------------------  196 (330)
Q Consensus       141 ~~l~~~~~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~---------------------  196 (330)
                      ..-+.+.. .+..+   ..+++|+|+++.++++|+.|++||+ |++.+++.......+.                     
T Consensus       173 ~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~-wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          173 LTDEGPIL-AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI-FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             EETTEEEE-EEEECSSCEEEEEEETTEEEEEEEEETTSEEEE-EETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             CCCCceee-eecCCCCCcEEEEECCCCCceEEecCCCCEEEE-EECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            22222221 12222   2588999998766888889999999 9998876554443332                     


Q ss_pred             ----CcE--E--Ee---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC-----------------
Q psy682          197 ----NRL--F--SS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE-----------------  247 (330)
Q Consensus       197 ----d~V--i--aS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d-----------------  247 (330)
                          +.|  +  .+   ..++   +++.|+++++|+. .|+..+.|.+|..  .+..+.++|+                 
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~---s~s~d~~i~vwd~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGIL---AMCKSGAWLRWNLFANNDYNEISDSTM--KLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEE---EECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             ccccccceeeeeecCCCCEEE---EEeCCCCEEEEECccCCCCceEeeecC--ccccEEEccccccccccCcceeEEEcc
Confidence                222  0  00   1111   8999999999976 6888888888877  6666666654                 


Q ss_pred             ---ccEEEEcc-CCeEEEEee
Q psy682          248 ---GVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       248 ---G~~l~s~~-~~~~~~~s~  264 (330)
                         +.++++|+ ++++++|..
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~  346 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINT  346 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCEEEEEEC
Confidence               44677775 666655543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.76  E-value=4.2e-18  Score=162.12  Aligned_cols=199  Identities=11%  Similarity=0.033  Sum_probs=138.5

Q ss_pred             CcccCCCcEEEeecccc-------cccceeecCCCceeEEEeCCCCC-c------------------Ccceee--eecCc
Q psy682            1 MSGGDKGIVEVWRTFNL-------ALLYAFPSCDSSVRSLALSHDQK-Y------------------SPMMFS--TVLDD   52 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g-------~~l~tl~gH~~~V~svafSpdg~-~------------------~~l~~~--~~~~d   52 (330)
                      |+|+.||+|++|++.++       +.+.++.+|...|++++|+|+|+ +                  ..+...  .+|.+
T Consensus        98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  177 (402)
T 2aq5_A           98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD  177 (402)
T ss_dssp             EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS
T ss_pred             EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC
Confidence            57899999999999987       67889999999999999999985 3                  112223  45888


Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccC-CCCCCCCCCCCCCccccCCCceecc
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQS-PSYAETPGSPPGNLPLTLDPILTHP  130 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~-~~h~~~~~~~~~~l~fs~D~~l~~~  130 (330)
                      .+..++|+|++..+                 ++++.|++|++|++.... +... .+|.+   ..+..+.|++|+.+++.
T Consensus       178 ~v~~~~~~~~~~~l-----------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~  237 (402)
T 2aq5_A          178 TIYSVDWSRDGALI-----------------CTSCRDKRVRVIEPRKGTVVAEKDRPHEG---TRPVHAVFVSEGKILTT  237 (402)
T ss_dssp             CEEEEEECTTSSCE-----------------EEEETTSEEEEEETTTTEEEEEEECSSCS---SSCCEEEECSTTEEEEE
T ss_pred             ceEEEEECCCCCEE-----------------EEEecCCcEEEEeCCCCceeeeeccCCCC---CcceEEEEcCCCcEEEE
Confidence            88999999998875                 777889999999987655 3444 57763   24678999999995542


Q ss_pred             CC--CCCCCcceeccCCCC--cccee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc-cccccCC--CCcE
Q psy682          131 TS--NNNAPVPKRHLGDNF--SQKLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL-QEGKFDH--PNRL  199 (330)
Q Consensus       131 s~--~~~~~~~~~~l~~~~--~~~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l-~~~l~gH--~d~V  199 (330)
                      ..  +.+..+..+.+...-  .....    ....+++++||+++|+++|+.|++|++ |++.+++. +..+.+|  .+.|
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i-~d~~~~~~~~~~l~~~~~~~~v  316 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY-FEITSEAPFLHYLSMFSSKESQ  316 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE-EEECSSTTCEEEEEEECCSSCC
T ss_pred             eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE-EEecCCCcceEeecccccCCcc
Confidence            21  223334444443211  11111    112578899999998888888999999 99988873 4445444  3555


Q ss_pred             ----EEeHHHHHhhhccCCCcEEEEccc
Q psy682          200 ----FSSISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       200 ----iaSt~~lW~~SgS~Dgtvkl~~~~  223 (330)
                          +.+.-.+   .++.|+++++|...
T Consensus       317 ~~~~~sp~~~~---~~s~~~~~~~~~l~  341 (402)
T 2aq5_A          317 RGMGYMPKRGL---EVNKCEIARFYKLH  341 (402)
T ss_dssp             SEEEECCGGGS---CGGGTEEEEEEEEE
T ss_pred             cceEEeccccc---ceecceeEEEEEcC
Confidence                2232111   34567899999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=2.4e-17  Score=166.88  Aligned_cols=243  Identities=10%  Similarity=0.042  Sum_probs=162.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceeee------------ecCccEEEEEeCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFST------------VLDDVCMSLKFPS   61 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~~------------~~~d~~~~v~Fs~   61 (330)
                      |+++.|++|++||..+|+.+.+++.+.. +++++|||||++       ..+....            ........+.|+|
T Consensus       153 vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp  231 (543)
T 1nir_A          153 VTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  231 (543)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCC
Confidence            4677899999999999999999984444 999999999987       0000000            1122345566666


Q ss_pred             ----CCCeeEeeeccceeccCCcEEEEEcC-CcceEEEeCCCCCCcccC-CCCCCC-------CCCCCCCccccCCCcee
Q psy682           62 ----NSPICHVTANTYVTLHMPSVVTVTAN-HQFAINRWNPDYAASIQS-PSYAET-------PGSPPGNLPLTLDPILT  128 (330)
Q Consensus        62 ----~~~v~~~~~~~~~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~-~~h~~~-------~~~~~~~l~fs~D~~l~  128 (330)
                          ||+.+                 ++++ .+.+|.+|+....+.... ..+...       ....+..+.+++|+...
T Consensus       232 ~~~~dg~~l-----------------~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          232 FKGYEDRYT-----------------IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             STTCTTTEE-----------------EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             CcCCCCCEE-----------------EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence                66654                 3333 478899998765543222 221100       01245678899987632


Q ss_pred             ccCCCCCCCcceeccCCC--Cc-cceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE
Q psy682          129 HPTSNNNAPVPKRHLGDN--FS-QKLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL  199 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~~--~~-~~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V  199 (330)
                      ..+...+..++.+.....  +. .++..  ....++|+|||+++++++..|++|++ |++++|+++.++..    |..+.
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v-~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAV-IDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEE-EETTTTEEEEEEECSSSBCCTTC
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEE-EECCCCeEEEeeccCCCCCCCCC
Confidence            222333344444443221  10 01111  12468899999999999888999999 99999999887764    76543


Q ss_pred             --EEe--HHHHHhhhcc-CCCcEEEEcc-c-------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--------CCe
Q psy682          200 --FSS--ISLAWKNCQR-DTSDVKVHTT-F-------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGH  258 (330)
Q Consensus       200 --iaS--t~~lW~~SgS-~Dgtvkl~~~-~-------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--------~~~  258 (330)
                        +++  --.+|- +++ .|++|+||+. +       ++.+++|.+|.+  .+..|+|+|||+.|.++.        +++
T Consensus       374 ~~~~~p~~g~~~~-s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~~~~  450 (543)
T 1nir_A          374 ANFVHPKYGPVWS-TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQS  450 (543)
T ss_dssp             EEEEETTTEEEEE-EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred             cccCCCCCccEEE-eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCcccCce
Confidence              332  122343 554 6899999965 4       899999999987  889999999999999985        568


Q ss_pred             EEEEeeC
Q psy682          259 IAAFTMN  265 (330)
Q Consensus       259 ~~~~s~n  265 (330)
                      +.+|.++
T Consensus       451 v~v~d~~  457 (543)
T 1nir_A          451 VAVFDLK  457 (543)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.74  E-value=2.5e-17  Score=160.15  Aligned_cols=215  Identities=10%  Similarity=-0.003  Sum_probs=148.3

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C---ccee----------eeecCccEEEEEeCCCCCee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S---PMMF----------STVLDDVCMSLKFPSNSPIC   66 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~---~l~~----------~~~~~d~~~~v~Fs~~~~v~   66 (330)
                      ++|++|++. |+....+.+|...|.+++|||||+.       .   .+..          ...+...+..++|+|||+.|
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence            799999995 6778899999999999999999986       0   1111          23455667888888888865


Q ss_pred             EeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCC-CCCCCcceeccC
Q psy682           67 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTS-NNNAPVPKRHLG  144 (330)
Q Consensus        67 ~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~-~~~~~~~~~~l~  144 (330)
                      ++              +.+.+.+..|++|+..+.....+.+|.    ..+.++.|+||++ ++..+. ++...++.+.+.
T Consensus       238 a~--------------~~~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          238 AF--------------ALSKTGSLNLYVMDLASGQIRQVTDGR----SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             EE--------------EECTTSSCEEEEEETTTCCEEECCCCS----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EE--------------EEecCCCceEEEEECCCCCEEeCcCCC----CcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            22              233445566999999887777777775    3567899999999 554332 222234444443


Q ss_pred             CCCccceee---eeeEEEEecCCCeEEEeeccC--CeEEEeeecccccccccccCCCCcE---EEe--HHHHHhhhccCC
Q psy682          145 DNFSQKLRV---RHNCFVTTVDSRFLLACGFWD--NSFREPFTTMYLALQEGKFDHPNRL---FSS--ISLAWKNCQRDT  214 (330)
Q Consensus       145 ~~~~~~~~~---~~~~~~~spDg~~i~asg~~D--~tirl~w~~~~g~l~~~l~gH~d~V---iaS--t~~lW~~SgS~D  214 (330)
                      ..-.+.+..   ...+++|+|||++|+.++..+  ..|++ |+++++++. .+..|....   ++.  ...+   .++.|
T Consensus       300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~-~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~---~~s~~  374 (415)
T 2hqs_A          300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK-QDLATGGVQ-VLSSTFLDETPSLAPNGTMVI---YSSSQ  374 (415)
T ss_dssp             SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE-EETTTCCEE-ECCCSSSCEEEEECTTSSEEE---EEEEE
T ss_pred             CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEE-EECCCCCEE-EecCCCCcCCeEEcCCCCEEE---EEEcC
Confidence            221111211   234688999999977766542  57898 999888774 455664222   222  2222   45555


Q ss_pred             C---cEEEEcccCceeeecCCCCCCCCCcEEEeCCC
Q psy682          215 S---DVKVHTTFGDLLRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       215 g---tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~d  247 (330)
                      +   .|.+|+.+|+.++.|.+|.+  .|.+++|||.
T Consensus       375 ~~~~~l~~~d~~g~~~~~l~~~~~--~v~~~~~~~~  408 (415)
T 2hqs_A          375 GMGSVLNLVSTDGRFKARLPATDG--QVKFPAWSPY  408 (415)
T ss_dssp             TTEEEEEEEETTSCCEEECCCSSS--EEEEEEECCC
T ss_pred             CCccEEEEEECCCCcEEEeeCCCC--CCcCCccccc
Confidence            5   68889999999999999988  9999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=9.8e-18  Score=156.81  Aligned_cols=211  Identities=9%  Similarity=-0.006  Sum_probs=127.2

Q ss_pred             CcccCCCcEEEeeccc---------ccccceee-cCCCceeEEEeCC--CCCcCcceeeeecCccEEEEEeCCCCCeeEe
Q psy682            1 MSGGDKGIVEVWRTFN---------LALLYAFP-SCDSSVRSLALSH--DQKYSPMMFSTVLDDVCMSLKFPSNSPICHV   68 (330)
Q Consensus         1 asgs~d~~V~lW~~~~---------g~~l~tl~-gH~~~V~svafSp--dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~   68 (330)
                      +||+.|++|++|+...         ++.+..+. +|.+.|.+++|+|  +|++                           
T Consensus        89 ~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------  141 (343)
T 3lrv_A           89 ISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY---------------------------  141 (343)
T ss_dssp             EEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCE---------------------------
T ss_pred             EEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCE---------------------------
Confidence            5789999999997753         22233322 4445555555555  4444                           


Q ss_pred             eeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC
Q psy682           69 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN  146 (330)
Q Consensus        69 ~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~  146 (330)
                                    .++++.|++|++|+......... .++.   ...+.++.|+||+. +++++.++...+|..+-+..
T Consensus       142 --------------l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          142 --------------FIWADNRGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             --------------EEEEETTCCEEEEESSSSCEEEEECCCS---SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             --------------EEEEeCCCcEEEEECCCCcEEEEEecCC---CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence                          48888999999999976654332 2332   23578899999999 55444555444443332332


Q ss_pred             Cccceee-e---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC---CCc-----E-EEe--HHHHHhhhc
Q psy682          147 FSQKLRV-R---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH---PNR-----L-FSS--ISLAWKNCQ  211 (330)
Q Consensus       147 ~~~~~~~-~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH---~d~-----V-iaS--t~~lW~~Sg  211 (330)
                      ...++.. |   ..+++|+|||++|++++  |++||+ |++.+++....+..+   .-.     + +..  ...+   +|
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~  278 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVC-FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI---AY  278 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEE-EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE---EE
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEE-EEcCCCCcceeecccccccccccceEEEECCCCCEEE---Ee
Confidence            2133444 3   36889999999955544  569999 999988876665542   222     1 111  2222   66


Q ss_pred             cC-CCcEEEEccc-CceeeecCCCCCCCCCcEEEeCC---CccEEEEc-cCCeEEEEeeCCc
Q psy682          212 RD-TSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSR---EGVIVVNY-ERGHIAAFTMNGN  267 (330)
Q Consensus       212 S~-Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~---dG~~l~s~-~~~~~~~~s~nG~  267 (330)
                      +. |++|+||+.+ +.....+    .  .+..++|+|   +++.++++ .++.+.++...|.
T Consensus       279 s~~d~~i~v~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          279 SNESNSLTIYKFDKKTKNWTK----D--EESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             ETTTTEEEEEEECTTTCSEEE----E--EEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             cCCCCcEEEEEEcccccceEe----c--CceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            67 9999999762 2221222    2  567788888   88777776 3666666554443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.73  E-value=1.5e-17  Score=161.01  Aligned_cols=190  Identities=9%  Similarity=0.003  Sum_probs=135.2

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-----------CCcccCCCCCCCCCCCCC
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-----------AASIQSPSYAETPGSPPG  117 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-----------~~~~~~~~h~~~~~~~~~  117 (330)
                      .|.+.|..++|+|+++-                ++|+++.+++|++|+...           ..+.++.+|..    .+.
T Consensus       126 ~h~~~v~~l~~~p~~~~----------------~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~  185 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNAC----------------VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK----EGY  185 (430)
T ss_dssp             EESSCCSEEEEETTEEE----------------EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS----CCC
T ss_pred             cCCCcEEEEEECCCCCc----------------EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC----CeE
Confidence            45555566666665321                257888899999999864           33455568874    678


Q ss_pred             CccccCCCc--eeccCCCCCCCcceeccCCC--C------ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          118 NLPLTLDPI--LTHPTSNNNAPVPKRHLGDN--F------SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       118 ~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~--~------~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      ++.|+|++.  +++++.++  .+..|.+...  .      ...+..|   ..+++++|++..++++++.|++|++ |++.
T Consensus       186 ~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i-~d~~  262 (430)
T 2xyi_A          186 GLSWNPNLNGYLLSASDDH--TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI-WDTR  262 (430)
T ss_dssp             CEEECTTSTTEEEEECTTS--CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE-EETT
T ss_pred             EEEeCCCCCCeEEEEeCCC--eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE-EECC
Confidence            899999987  55433333  3444444321  0      1122233   3588999965555777788999999 9998


Q ss_pred             cc---cccccccCCCCcE--EE--e---HHHHHhhhccCCCcEEEEccc--CceeeecCCCCCCCCCcEEEeCCCcc-EE
Q psy682          185 YL---ALQEGKFDHPNRL--FS--S---ISLAWKNCQRDTSDVKVHTTF--GDLLRSLDPPSGFASPESVVMSREGV-IV  251 (330)
Q Consensus       185 ~g---~l~~~l~gH~d~V--ia--S---t~~lW~~SgS~Dgtvkl~~~~--G~ll~tL~~h~~~~~v~~v~fS~dG~-~l  251 (330)
                      ++   +.+..+.+|...|  ++  .   .+.+   +|+.||+|+||+..  ++.+.++.+|.+  .|.+|+|+|+|. +|
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~---tg~~dg~v~vwd~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA---TGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETIL  337 (430)
T ss_dssp             CSCSSSCSEEEECCSSCEEEEEECSSCTTEEE---EEETTSEEEEEETTCTTSCSEEEECCSS--CEEEEEECSSCTTEE
T ss_pred             CCCCCcceeEeecCCCCeEEEEeCCCCCCEEE---EEeCCCeEEEEeCCCCCCCeEEeecCCC--CEEEEEECCCCCCEE
Confidence            77   5777788998887  22  1   2344   89999999999863  678999999988  999999999995 67


Q ss_pred             EEc-cCCeEEEEeeCC
Q psy682          252 VNY-ERGHIAAFTMNG  266 (330)
Q Consensus       252 ~s~-~~~~~~~~s~nG  266 (330)
                      |++ .++.+.+|.++.
T Consensus       338 ~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          338 ASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEETTSCCEEEEGGG
T ss_pred             EEEeCCCcEEEEeCCC
Confidence            777 588999998875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=5.5e-17  Score=143.67  Aligned_cols=214  Identities=11%  Similarity=0.075  Sum_probs=145.2

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +++.|++|++|++.+++.. .+..|...|.+++|||||+.                                       +
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~---------------------------------------l   56 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKY---------------------------------------L   56 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSE---------------------------------------E
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCE---------------------------------------E
Confidence            3578999999999887654 66779999999999999887                                       1


Q ss_pred             EEEEcCCcceEEEeCCCC-CCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCC--CCCCcceeccCCCCccceee--e
Q psy682           82 VTVTANHQFAINRWNPDY-AASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSN--NNAPVPKRHLGDNFSQKLRV--R  154 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~-~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~--~~~~~~~~~l~~~~~~~~~~--~  154 (330)
                        ++++ +..|++|+.++ ....... +|.   ...+.++.|+||++ ++..+..  ....++...+.......+..  .
T Consensus        57 --~~~~-~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  130 (297)
T 2ojh_A           57 --LLNS-EGLLYRLSLAGDPSPEKVDTGFA---TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP  130 (297)
T ss_dssp             --EEEE-TTEEEEEESSSCCSCEECCCTTC---CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS
T ss_pred             --EEEc-CCeEEEEeCCCCCCceEeccccc---cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC
Confidence              2222 55799999987 6555443 442   13567899999999 4443311  23344444432211111211  1


Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcE----EEe---HHHHHhhhccCCCcEEEEcc--cC
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRL----FSS---ISLAWKNCQRDTSDVKVHTT--FG  224 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~V----iaS---t~~lW~~SgS~Dgtvkl~~~--~G  224 (330)
                      ..+++++|||++|+.++..|+++++ |.++. +.....+..|...+    +..   .+..   +++.|+.++||..  ++
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~---~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDI-YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF---NSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEE-EEEETTTCCEEECCCSSSCEEEEEECTTSSEEEE---EECTTSSCEEEEEETTS
T ss_pred             ccceEECCCCCEEEEEECCCCceEE-EEEECCCCcceEcccCCCccccceECCCCCEEEE---EecCCCCccEEEECCCC
Confidence            3567899999998867778999999 98532 23334566666655    111   1221   4557999999965  67


Q ss_pred             ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-C-----------CeEEEEeeCCc
Q psy682          225 DLLRSLDPPSGFASPESVVMSREGVIVVNYE-R-----------GHIAAFTMNGN  267 (330)
Q Consensus       225 ~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~-----------~~~~~~s~nG~  267 (330)
                      ..++.+..|..  .+..++|||||+.|+.++ +           ..+..|..++.
T Consensus       207 ~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          207 SSVERITDSAY--GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             SCEEECCCCSE--EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             CCcEEEecCCc--ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            88899998877  899999999999988874 2           45888887764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.73  E-value=5.5e-17  Score=156.54  Aligned_cols=208  Identities=11%  Similarity=0.146  Sum_probs=143.6

Q ss_pred             ecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEE
Q psy682           24 PSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVT   85 (330)
Q Consensus        24 ~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS   85 (330)
                      .+|...|.+++|  ||+.                  .......+|...|..+.|  ++..                 +++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~-----------------l~s  188 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV-----------------IIT  188 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSE-----------------EEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCE-----------------EEE
Confidence            567778998888  5554                  112223455556665555  4443                 588


Q ss_pred             cCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCc--cceeeeee-EEEEe
Q psy682           86 ANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS--QKLRVRHN-CFVTT  161 (330)
Q Consensus        86 ~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~--~~~~~~~~-~~~~s  161 (330)
                      ++.|++|++|+...+. +.+..+|.+    .+.++.|+++ .+++++.++...++....+....  ..+..+.. ..++.
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~  263 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTLIHHCE----AVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  263 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCS----CEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCC----cEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence            8899999999987555 455568864    5667888743 56654554444333322222111  12223321 22234


Q ss_pred             cCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCC
Q psy682          162 VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGF  236 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~  236 (330)
                      .|+++ +++|+.|++|++ |++.+++++..+.+|.+.|..   . ...+   +|+.||+|++|+. +|+.++++.+|.+ 
T Consensus       264 ~~~~~-l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~---~g~~dg~i~iwd~~~~~~~~~~~~h~~-  337 (435)
T 1p22_A          264 FDDKY-IVSASGDRTIKV-WNTSTCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACLRVLEGHEE-  337 (435)
T ss_dssp             EETTE-EEEEETTSEEEE-EETTTCCEEEEEECCSSCEEEEEEETTEEE---EEETTSCEEEEETTTCCEEEEECCCSS-
T ss_pred             eCCCE-EEEEeCCCeEEE-EECCcCcEEEEEcCCCCcEEEEEeCCCEEE---EEeCCCeEEEEECCCCCEEEEEeCCcC-
Confidence            48888 455668999999 999999999999999998822   1 3333   8999999999986 6999999999998 


Q ss_pred             CCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          237 ASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                       .|.+++|  ||+.|++++ ++.++.|....
T Consensus       338 -~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          338 -LVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             -CEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             -cEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence             9999999  888999985 88999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.72  E-value=3.3e-17  Score=158.00  Aligned_cols=227  Identities=15%  Similarity=0.165  Sum_probs=153.3

Q ss_pred             eecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682           12 WRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus        12 W~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      |+....+....|.||.+.|.. +++++|+.                  ..+....+|...|..+.|+  +.         
T Consensus       103 w~~~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~---------  170 (445)
T 2ovr_B          103 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN---------  170 (445)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT---------
T ss_pred             ccCCCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC---------
Confidence            433333456779999998633 35556665                  1122233555556666554  22         


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR  152 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~  152 (330)
                              .+++++.|++|++|+.+.+. +.+..+|.+    .+.++.+.++ .+++++.++...++....+. ....+.
T Consensus       171 --------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~-~~~~~~  236 (445)
T 2ovr_B          171 --------IIISGSTDRTLKVWNAETGECIHTLYGHTS----TVRCMHLHEK-RVVSGSRDATLRVWDIETGQ-CLHVLM  236 (445)
T ss_dssp             --------EEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEEETT-EEEEEETTSEEEEEESSSCC-EEEEEE
T ss_pred             --------EEEEEeCCCeEEEEECCcCcEEEEECCCCC----cEEEEEecCC-EEEEEeCCCEEEEEECCCCc-EEEEEc
Confidence                    34888889999999987554 455568874    5667777532 36654444433333322121 112333


Q ss_pred             eee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHHhh------
Q psy682          153 VRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAWKN------  209 (330)
Q Consensus       153 ~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW~~------  209 (330)
                      .+.   .++++  |+++ +++|+.|++|++ |++.+++.+..+.+|.+.|         +++     ++++|+.      
T Consensus       237 ~~~~~v~~~~~--~~~~-l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  312 (445)
T 2ovr_B          237 GHVAAVRCVQY--DGRR-VVSGAYDFMVKV-WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI  312 (445)
T ss_dssp             CCSSCEEEEEE--CSSC-EEEEETTSCEEE-EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCcccEEEEEE--CCCE-EEEEcCCCEEEE-EECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE
Confidence            332   35444  8888 555668999999 9999999999999999887         222     7888876      


Q ss_pred             ---------------------hccCCCcEEEEcc-cCceeeecCC---CCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          210 ---------------------CQRDTSDVKVHTT-FGDLLRSLDP---PSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       210 ---------------------SgS~Dgtvkl~~~-~G~ll~tL~~---h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                                           +|+.||+|++|+. +|+.++++.+   |..  .|.+++|+  +..|++++ ++.++.|.
T Consensus       313 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          313 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS--CEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC--CEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence                                 8999999999986 7999999997   655  89999996  57788875 88999998


Q ss_pred             e-CCceeeec
Q psy682          264 M-NGNRLRHE  272 (330)
Q Consensus       264 ~-nG~~las~  272 (330)
                      . +|+.++.+
T Consensus       389 ~~~~~~~~~~  398 (445)
T 2ovr_B          389 LKTGEFIRNL  398 (445)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCceeeee
Confidence            5 47777666

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.4e-17  Score=173.77  Aligned_cols=195  Identities=11%  Similarity=-0.043  Sum_probs=137.9

Q ss_pred             cceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC
Q psy682           20 LYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY   99 (330)
Q Consensus        20 l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~   99 (330)
                      ..++.||.+.|++++|||||++                                         +++++.|++|++|+..+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~-----------------------------------------latg~~dg~I~vwd~~~   40 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKR-----------------------------------------LATCSSDKTIKIFEVEG   40 (753)
T ss_dssp             ------CCCCEEEECCCSSSCC-----------------------------------------EEEEETTTEEEEEEEET
T ss_pred             eeecccCcceeEEEEECCCCCe-----------------------------------------EEEEECCCcEEEEecCC
Confidence            3567889999999988888877                                         47788899999999863


Q ss_pred             C---CcccCCCCCCCCCCCCCCccccCC--Cc-eeccCCCCCCCcceeccCCC-Cccceeee---eeEEEEecC--CCeE
Q psy682          100 A---ASIQSPSYAETPGSPPGNLPLTLD--PI-LTHPTSNNNAPVPKRHLGDN-FSQKLRVR---HNCFVTTVD--SRFL  167 (330)
Q Consensus       100 ~---~~~~~~~h~~~~~~~~~~l~fs~D--~~-l~~~s~~~~~~~~~~~l~~~-~~~~~~~~---~~~~~~spD--g~~i  167 (330)
                      .   ...+..+|.    .++.++.|++|  +. +++++.++...+|....+.. ....+..+   ..+++|+|+  +++ 
T Consensus        41 ~~~~~~~~l~~h~----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~-  115 (753)
T 3jro_A           41 ETHKLIDTLTGHE----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-  115 (753)
T ss_dssp             TEEEEEEEECCCS----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE-
T ss_pred             CCCccceeccCCc----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE-
Confidence            2   245566887    46778999988  76 66655555544443332210 11122222   258899999  888 


Q ss_pred             EEeeccCCeEEEeeeccccc--ccccccCCCCcEE----Ee---------------HHHHHhhhccCCCcEEEEccc-C-
Q psy682          168 LACGFWDNSFREPFTTMYLA--LQEGKFDHPNRLF----SS---------------ISLAWKNCQRDTSDVKVHTTF-G-  224 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~--l~~~l~gH~d~Vi----aS---------------t~~lW~~SgS~Dgtvkl~~~~-G-  224 (330)
                      +++|+.|++|++ |++.+++  ....+.+|...|.    ..               ...+   +|+.||+|++|+.. + 
T Consensus       116 l~sgs~dg~I~v-wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~---sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          116 LLVASSDGKVSV-VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV---TGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             EEEEETTSEEEE-EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE---EEETTSCEEEEEEETTT
T ss_pred             EEEEeCCCcEEE-EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE---EEECCCeEEEEeccCCc
Confidence            555668999999 9998763  3456678888872    11               1222   89999999999763 4 


Q ss_pred             ---ceeeecCCCCCCCCCcEEEeCCC---ccEEEEcc-CCeEEEEeeCC
Q psy682          225 ---DLLRSLDPPSGFASPESVVMSRE---GVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       225 ---~ll~tL~~h~~~~~v~~v~fS~d---G~~l~s~~-~~~~~~~s~nG  266 (330)
                         .++.++.+|.+  .|.+++|+|+   |..+++++ ++.++.|.++.
T Consensus       192 ~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          192 QTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             TEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence               67889999999  9999999999   99999995 77788887665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.71  E-value=9.6e-17  Score=150.71  Aligned_cols=221  Identities=13%  Similarity=0.047  Sum_probs=148.8

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee----------eeecCccEEEEEeCCCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF----------STVLDDVCMSLKFPSNS   63 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~----------~~~~~d~~~~v~Fs~~~   63 (330)
                      +++.|++|++|++.+|+.+.++..|. .|.+++|+|||+.        ..+..          ...+...+..+.|+|++
T Consensus        49 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg  127 (391)
T 1l0q_A           49 ANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG  127 (391)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             ECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC
Confidence            56789999999999999999998877 9999999999986        00100          11223345667777777


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceec
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH  142 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~  142 (330)
                      +.+                .++++.+++|++|+.......... .|.     .+..+.|+||+.....++..+..+..+.
T Consensus       128 ~~l----------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          128 KKL----------------YVTNNGDKTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             SEE----------------EEEETTTTEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CEE----------------EEEeCCCCEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            753                467778899999998765543333 342     4578999999983321233333344454


Q ss_pred             cCCC-Ccccee--eeeeEEEEecCCCeEEEeec--cCCeEEEeeecccccccccccCCCCcE-E-Ee----HHHHHhhhc
Q psy682          143 LGDN-FSQKLR--VRHNCFVTTVDSRFLLACGF--WDNSFREPFTTMYLALQEGKFDHPNRL-F-SS----ISLAWKNCQ  211 (330)
Q Consensus       143 l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~--~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS----t~~lW~~Sg  211 (330)
                      +... ....+.  ....+++|+|||++|++++.  .|+.|++ |++.+++.+..+..|.... + .+    .+.+   ++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~---s~  262 (391)
T 1l0q_A          187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM-IDTGTNKITARIPVGPDPAGIAVTPDGKKVYV---AL  262 (391)
T ss_dssp             TTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE-EETTTTEEEEEEECCSSEEEEEECTTSSEEEE---EE
T ss_pred             CCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEE-EECCCCeEEEEEecCCCccEEEEccCCCEEEE---Ec
Confidence            4221 111111  12357889999999888775  6899999 9999999888888887643 2 12    2223   78


Q ss_pred             cCCCcEEEEcc-cCceeeecCCCCCC-CCCcEEEeCCCc
Q psy682          212 RDTSDVKVHTT-FGDLLRSLDPPSGF-ASPESVVMSREG  248 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~~h~~~-~~v~~v~fS~dG  248 (330)
                      +.|++|++|+. +|++++++..|... .....+.+.|+|
T Consensus       263 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (391)
T 1l0q_A          263 SFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ  301 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred             CCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence            99999999976 79999999877551 012235555544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=1e-16  Score=147.22  Aligned_cols=262  Identities=12%  Similarity=0.082  Sum_probs=155.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCCC-eeEeee---ccc-e
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNSP-ICHVTA---NTY-V   74 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~~-v~~~~~---~~~-~   74 (330)
                      ++++.+++|++|++.+|+.+.++..+...+ +++|||||+.  + +.. ..++.++.+....... ...+..   ... +
T Consensus        14 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~--l-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (331)
T 3u4y_A           14 VVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN--V-VVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV   89 (331)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE--E-EEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred             EEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE--E-EEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence            356788999999999999999988888888 9999999985  1 111 1122222222111111 111110   111 2


Q ss_pred             eccCCcEEEEEcCCc-c--eEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC-cceeccCC--CC
Q psy682           75 TLHMPSVVTVTANHQ-F--AINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP-VPKRHLGD--NF  147 (330)
Q Consensus        75 ~~~~~~~v~vS~~~~-~--tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~-~~~~~l~~--~~  147 (330)
                      .+++++..+++++.+ .  +|.+|+.+.........+.    ..+..+.|+||++ +.++.. .... +..+.+..  .+
T Consensus        90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~-~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A           90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDR-SSANTVRRFKIDADGVL  164 (331)
T ss_dssp             EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----TTEEEEEECTTSSCEEEEEE-TTTTEEEEEEECTTCCE
T ss_pred             EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----CCccceEECCCCCEEEEEec-CCCceEEEEEECCCCcE
Confidence            333333333343444 3  8999999766544433221    2346899999998 443222 2233 34333321  01


Q ss_pred             c----ccee--eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc---cccccCCCCc--E-EEeHHH-HHhhhccCC
Q psy682          148 S----QKLR--VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL---QEGKFDHPNR--L-FSSISL-AWKNCQRDT  214 (330)
Q Consensus       148 ~----~~~~--~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l---~~~l~gH~d~--V-iaSt~~-lW~~SgS~D  214 (330)
                      .    +.+.  ....+++|+|||+++++++..+++|++ |+++++++   +..+..+...  + +...-+ +|- +...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v-~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~  242 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI-LETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV-LTEST  242 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE-EECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEE-ECSSE
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE-EECCCCcccceeeeccCCCCCceEEECCCCCEEEE-EEcCC
Confidence            0    0000  113578899999988888888999999 99998988   6666654332  2 222101 111 45567


Q ss_pred             CcEEEEcc-cCce--eeecCCC----CCC-CCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeeecc
Q psy682          215 SDVKVHTT-FGDL--LRSLDPP----SGF-ASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       215 gtvkl~~~-~G~l--l~tL~~h----~~~-~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las~~  273 (330)
                      ++|.+|+. +|++  +.++..+    ... ..+..++|||||+.|+.+  +.+.+..|.++++.+....
T Consensus       243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~  311 (331)
T 3u4y_A          243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVA  311 (331)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECT
T ss_pred             CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccccee
Confidence            88999976 5776  4444332    110 123569999999977544  4678999999998776553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.71  E-value=3.2e-17  Score=156.05  Aligned_cols=243  Identities=9%  Similarity=-0.001  Sum_probs=157.7

Q ss_pred             cccCCCcEEEeeccc--c--cccceeecCCCceeEEEeCCCCCcCcceeee---------------------------ec
Q psy682            2 SGGDKGIVEVWRTFN--L--ALLYAFPSCDSSVRSLALSHDQKYSPMMFST---------------------------VL   50 (330)
Q Consensus         2 sgs~d~~V~lW~~~~--g--~~l~tl~gH~~~V~svafSpdg~~~~l~~~~---------------------------~~   50 (330)
                      +++.|+.++||.++.  +  +.+..++.+. .+.+++|+|++++    +..                           +|
T Consensus        94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~----~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  168 (433)
T 3bws_A           94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRL----AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK  168 (433)
T ss_dssp             SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEE----EEEBTTSSSEEEEETTTCCEEEECCCHHHHTT
T ss_pred             cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeE----EEEeCCCCeEEEEECCCCeEeeecCccccccc
Confidence            355667667776543  4  5666777665 4559999997766    222                           33


Q ss_pred             CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceec
Q psy682           51 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTH  129 (330)
Q Consensus        51 ~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~  129 (330)
                      ...+..++|+|++.                 +.++++.+++|++|+.+... ..+..+|.    ..+.++.|+||+....
T Consensus       169 ~~~v~~~~~~~~~~-----------------~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          169 LGFVETISIPEHNE-----------------LWVSQMQANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPIRDLVY  227 (433)
T ss_dssp             CCEEEEEEEGGGTE-----------------EEEEEGGGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETTTTEEE
T ss_pred             CCceeEEEEcCCCE-----------------EEEEECCCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCCCCEEE
Confidence            33445555555554                 45888899999999987654 34444665    3567899999998332


Q ss_pred             cCCCCCCCcceeccCCC-Ccccee--eeeeEEEEecCCCeEEEeec-------cCCeEEEeeecccccccccccCCCCcE
Q psy682          130 PTSNNNAPVPKRHLGDN-FSQKLR--VRHNCFVTTVDSRFLLACGF-------WDNSFREPFTTMYLALQEGKFDHPNRL  199 (330)
Q Consensus       130 ~s~~~~~~~~~~~l~~~-~~~~~~--~~~~~~~~spDg~~i~asg~-------~D~tirl~w~~~~g~l~~~l~gH~d~V  199 (330)
                      .++..+..+..+.+... ....+.  ....+++++|||++|++++.       .|+.|++ |++.+++++..+ +|...+
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~-~d~~~~~~~~~~-~~~~~~  305 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGI-YSMDKEKLIDTI-GPPGNK  305 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEE-EETTTTEEEEEE-EEEECE
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEE-EECCCCcEEeec-cCCCCc
Confidence            12222233444443211 111111  12357889999999777764       4889999 999888876654 333333


Q ss_pred             ----EEe---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----------------
Q psy682          200 ----FSS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----------------  255 (330)
Q Consensus       200 ----iaS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----------------  255 (330)
                          +.+   .+.+   +++.|++|++|+. +|++++.+. +..  .|.+++|+|||+.|+.++                
T Consensus       306 ~~~~~~~~g~~l~~---~~~~~~~v~v~d~~~~~~~~~~~-~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~  379 (433)
T 3bws_A          306 RHIVSGNTENKIYV---SDMCCSKIEVYDLKEKKVQKSIP-VFD--KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV  379 (433)
T ss_dssp             EEEEECSSTTEEEE---EETTTTEEEEEETTTTEEEEEEE-CSS--SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred             ceEEECCCCCEEEE---EecCCCEEEEEECCCCcEEEEec-CCC--CCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence                222   2222   7789999999986 588888886 445  799999999999887764                


Q ss_pred             CCeEEEEee-CCceeeeccCcccc
Q psy682          256 RGHIAAFTM-NGNRLRHESHNDNL  278 (330)
Q Consensus       256 ~~~~~~~s~-nG~~las~~~~~dV  278 (330)
                      ++.+..|.. +|+.+........+
T Consensus       380 dg~v~~~d~~~~~~~~~~~~~~~~  403 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFWEAGNQP  403 (433)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSSE
T ss_pred             ceEEEEEECCCCcEEEEecCCCCC
Confidence            248999986 66666666544333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=5.2e-16  Score=158.83  Aligned_cols=226  Identities=8%  Similarity=-0.095  Sum_probs=144.9

Q ss_pred             cccC-CC-----cEEEeecccccccceeecCCCc------------------------eeEEEeCCCCCc----------
Q psy682            2 SGGD-KG-----IVEVWRTFNLALLYAFPSCDSS------------------------VRSLALSHDQKY----------   41 (330)
Q Consensus         2 sgs~-d~-----~V~lW~~~~g~~l~tl~gH~~~------------------------V~svafSpdg~~----------   41 (330)
                      +++. |+     +|++|++.+|+....+.+|...                        |.+++|||||+.          
T Consensus        53 ~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~  132 (741)
T 2ecf_A           53 FLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELY  132 (741)
T ss_dssp             EEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEETTEEE
T ss_pred             EEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEE
Confidence            3455 77     8999999999887777666543                        899999999986          


Q ss_pred             ------C---cceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCC
Q psy682           42 ------S---PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAET  111 (330)
Q Consensus        42 ------~---~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~  111 (330)
                            .   .......+...+..++|||||+.|               +.++   +..|++|+.+++...+.. .+...
T Consensus       133 ~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~l---------------a~~~---~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          133 LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFV---------------SFIR---GRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             EEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEE---------------EEEE---TTEEEEEETTTTEEEECCCCCCSS
T ss_pred             EEECCCCCcceEEEcccCCcccccccCCCCCCEE---------------EEEe---CCcEEEEecCCCCEEEeccCCccc
Confidence                  1   112223455668889999999975               2222   236999999876655443 22211


Q ss_pred             C------------CCCCCCccccCCCc-eeccCCCCCC-------------------------------CcceeccCC-C
Q psy682          112 P------------GSPPGNLPLTLDPI-LTHPTSNNNA-------------------------------PVPKRHLGD-N  146 (330)
Q Consensus       112 ~------------~~~~~~l~fs~D~~-l~~~s~~~~~-------------------------------~~~~~~l~~-~  146 (330)
                      +            ...+..+.|||||+ ++.++.+...                               .++.+.+.. .
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence            0            00146799999999 5553332210                               122223211 1


Q ss_pred             Cccce------eeeeeEEEEecCCCeEEEeec----cCCeEEEeeecccccccccccCCCC--------cEEEe--HHHH
Q psy682          147 FSQKL------RVRHNCFVTTVDSRFLLACGF----WDNSFREPFTTMYLALQEGKFDHPN--------RLFSS--ISLA  206 (330)
Q Consensus       147 ~~~~~------~~~~~~~~~spDg~~i~asg~----~D~tirl~w~~~~g~l~~~l~gH~d--------~ViaS--t~~l  206 (330)
                      -...+      ......++| |||++|+.++.    .+..|++ |++++|++...+.+|.+        ..+..  .+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE-VTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE-EETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE-EECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            00111      122357889 99999776543    3567899 99998887766665543        12332  3222


Q ss_pred             HhhhccCCCcEEEEc--ccCceeeecCCCCCCCCCcEE-EeCCCccEEEE
Q psy682          207 WKNCQRDTSDVKVHT--TFGDLLRSLDPPSGFASPESV-VMSREGVIVVN  253 (330)
Q Consensus       207 W~~SgS~Dgtvkl~~--~~G~ll~tL~~h~~~~~v~~v-~fS~dG~~l~s  253 (330)
                         +++.||+++||.  .+|+ ++.|.+|..  .|..+ +|||||+.|+.
T Consensus       353 ---~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          353 ---SSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             ---EECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTTEEEE
T ss_pred             ---EecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCCEEEE
Confidence               678899999985  4688 899999877  78887 59999986643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.63  E-value=2.9e-15  Score=136.60  Aligned_cols=247  Identities=11%  Similarity=0.123  Sum_probs=143.5

Q ss_pred             cccCCCcEEEeecc-ccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecC-ccEEEEEeCCC-CCeeEee------e
Q psy682            2 SGGDKGIVEVWRTF-NLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLD-DVCMSLKFPSN-SPICHVT------A   70 (330)
Q Consensus         2 sgs~d~~V~lW~~~-~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~-d~~~~v~Fs~~-~~v~~~~------~   70 (330)
                      +++.|++|++|+++ +|+  .+.. ..|...+.+++|||||+.   .+..... ..+....+.++ +....+.      .
T Consensus        10 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~---l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A           10 ASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY---LYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE---EEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             eCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE---EEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            45679999999995 343  3333 458889999999999986   1222222 33444344322 2221111      1


Q ss_pred             ccceeccCCcE-EEEEcCCcceEEEeCCCCC---C-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682           71 NTYVTLHMPSV-VTVTANHQFAINRWNPDYA---A-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        71 ~~~~~~~~~~~-v~vS~~~~~tv~lW~~~~~---~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~  144 (330)
                      ...+.+++++. +.+++..++.|++|+.+.+   . .....++     ..+..+.|+||++ +.+++ ..+..+..+.+.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~  159 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-----DGCHSANISPDNRTLWVPA-LKQDRICLFTVS  159 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-----TTBCCCEECTTSSEEEEEE-GGGTEEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-----CCceEEEECCCCCEEEEec-CCCCEEEEEEec
Confidence            11233444443 3455556788999998311   1 2222233     2467899999998 44322 122334444442


Q ss_pred             C--CCcc----ceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecc--cccc--ccccc----CCCC--c---E-E
Q psy682          145 D--NFSQ----KLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLAL--QEGKF----DHPN--R---L-F  200 (330)
Q Consensus       145 ~--~~~~----~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l--~~~l~----gH~d--~---V-i  200 (330)
                      .  .+..    .+..    ...+++|+|||+++++++..+++|++ |+++  +|++  .+.+.    +|..  .   + +
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV-WELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE-EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEE-EEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            2  1110    0111    12468899999998888888999999 9984  3443  22221    2111  1   2 2


Q ss_pred             Ee---HHHHHhhhccCCCcEEEEccc-----CceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682          201 SS---ISLAWKNCQRDTSDVKVHTTF-----GDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  265 (330)
Q Consensus       201 aS---t~~lW~~SgS~Dgtvkl~~~~-----G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n  265 (330)
                      ..   .+.+   +++.|++|++|+.+     .+.+..+..+ +  .+..++|+|||+.|+.+  +++.+..|.+|
T Consensus       239 s~dg~~l~v---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~--~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          239 TPDGRHLYA---CDRTASLITVFSVSEDGSVLSKEGFQPTE-T--QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CTTSSEEEE---EETTTTEEEEEEECTTSCCEEEEEEEECS-S--SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCCEEEE---EecCCCEEEEEEEcCCCCceEEeeeecCC-C--ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            21   2222   66789999999764     2445555543 2  48999999999977666  37899999776

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.63  E-value=4.2e-16  Score=156.11  Aligned_cols=241  Identities=9%  Similarity=-0.039  Sum_probs=150.4

Q ss_pred             cccC-CCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeee--cCc--cEEEEEeCCCCCeeEeee---cc
Q psy682            2 SGGD-KGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTV--LDD--VCMSLKFPSNSPICHVTA---NT   72 (330)
Q Consensus         2 sgs~-d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~--~~d--~~~~v~Fs~~~~v~~~~~---~~   72 (330)
                      +++. ||+++||++.+|+ ...+..|. ..|++++|||| ++  +.....  ..+  .++.+....++....+..   ..
T Consensus        38 ~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd-~~--l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~  113 (582)
T 3o4h_A           38 VVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG-RV--ILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR  113 (582)
T ss_dssp             EEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS-EE--EEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBE
T ss_pred             EEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC-eE--EEEeccCCCCcceEEEEEeccCCCccccccCCCCce
Confidence            3444 9999999996555 45555555 79999999999 54  211111  122  233333311333222211   11


Q ss_pred             ceecc--CCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCC--CCcceeccCCCC
Q psy682           73 YVTLH--MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNN--APVPKRHLGDNF  147 (330)
Q Consensus        73 ~~~~~--~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~--~~~~~~~l~~~~  147 (330)
                      ...+.  .+.++.++++.+..+ +|+.+++...++..+.      ..++.|||||+ ++..+.+..  ..++.+.+...-
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~  186 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLP------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG  186 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEES------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred             eeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCC------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence            12233  334677777777655 9999887766665443      16799999999 443332211  224444432211


Q ss_pred             ccceeee---eeEEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcE---E--------Ee---HHHHHh
Q psy682          148 SQKLRVR---HNCFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRL---F--------SS---ISLAWK  208 (330)
Q Consensus       148 ~~~~~~~---~~~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~V---i--------aS---t~~lW~  208 (330)
                      .+.+..+   ...++|||||++|+ ++..|+  .|++ |++++|++. .+.+|...+   .        .|   .+.+  
T Consensus       187 ~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~--  261 (582)
T 3o4h_A          187 LRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVT-VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV--  261 (582)
T ss_dssp             CEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEE-ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE--
T ss_pred             ceEeecCCCccccceECCCCCEEE-EccCCCeeEEEE-EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE--
Confidence            1223322   35788999999976 556788  8898 999988887 777776654   1        22   2222  


Q ss_pred             hhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC---eEEEEeeCC
Q psy682          209 NCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG---HIAAFTMNG  266 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~---~~~~~s~nG  266 (330)
                       +++.||+++||.. |++++++.   +  .|.+++|| ||+++++++ +.   .+..+..+|
T Consensus       262 -~~~~~g~~~l~~~-g~~~~~~~---~--~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          262 -VARREGRSAVFID-GERVEAPQ---G--NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -EEEETTEEEEEET-TEEECCCS---S--EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             -EEEcCCcEEEEEE-CCeeccCC---C--ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence             7889999999998 99887544   3  78999999 999998874 32   366666666

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.60  E-value=1.7e-14  Score=155.29  Aligned_cols=250  Identities=8%  Similarity=-0.054  Sum_probs=154.4

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc------C-------cce----------eeeecCccE-------EE
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------S-------PMM----------FSTVLDDVC-------MS   56 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------~-------~l~----------~~~~~~d~~-------~~   56 (330)
                      +.|++|++..|+ ...+.+|...|.+++|||||+.      .       -+.          .++.|...+       ..
T Consensus        33 ~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~  111 (1045)
T 1k32_A           33 DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDV  111 (1045)
T ss_dssp             TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEE
T ss_pred             CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCccccccccccc
Confidence            678889886554 5677889999999999999885      1       011          123455556       78


Q ss_pred             EEeCCCCCeeEeeecc----c--------------eecc-----------------------------------------
Q psy682           57 LKFPSNSPICHVTANT----Y--------------VTLH-----------------------------------------   77 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~----~--------------~~~~-----------------------------------------   77 (330)
                      +.|||||++++++...    .              ..+.                                         
T Consensus       112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~  191 (1045)
T 1k32_A          112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  191 (1045)
T ss_dssp             EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence            8899999866665422    0              0110                                         


Q ss_pred             ---------------------CCcEEEEEcCCcceEEEeCCC--CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682           78 ---------------------MPSVVTVTANHQFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN  133 (330)
Q Consensus        78 ---------------------~~~~v~vS~~~~~tv~lW~~~--~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~  133 (330)
                                           ++ .+.++++.++++++|..+  +....++.+|.     ....+.|||||+ ++.. . 
T Consensus       192 ~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-----~~~~~~~SpDG~~la~~-~-  263 (1045)
T 1k32_A          192 NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-----DYYPRHLNTDGRRILFS-K-  263 (1045)
T ss_dssp             ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-----SSCEEEEEESSSCEEEE-E-
T ss_pred             CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-----CcceeeEcCCCCEEEEE-e-
Confidence                                 22 344556677888999754  55556665664     244679999999 5432 2 


Q ss_pred             CCCCcceeccCCCCccceee--------------eeeEEEEe-cCCCeEEEeeccCCeEEEeeecccccccccccCCCC-
Q psy682          134 NNAPVPKRHLGDNFSQKLRV--------------RHNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN-  197 (330)
Q Consensus       134 ~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d-  197 (330)
                       +..++.+.+.......+..              ...+++|| |||++|+.++  ++.+.+ |+..+++..+ +.+|.. 
T Consensus       264 -~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~-~~~~~~~~~~-~~~~~~~  338 (1045)
T 1k32_A          264 -GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFI-QDVSGTYVLK-VPEPLRI  338 (1045)
T ss_dssp             -TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEE-ECTTSSBEEE-CSCCSCE
T ss_pred             -CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEE-EcCCCCceEE-ccCCCcc
Confidence             2223333321100001111              23578899 9999855544  778888 8877665443 444544 


Q ss_pred             cE------------EEe-HHHHH---hh----------------------------hccCCCcEEEEcc-cCceeeecCC
Q psy682          198 RL------------FSS-ISLAW---KN----------------------------CQRDTSDVKVHTT-FGDLLRSLDP  232 (330)
Q Consensus       198 ~V------------iaS-t~~lW---~~----------------------------SgS~Dgtvkl~~~-~G~ll~tL~~  232 (330)
                      .+            +++ ...+|   +.                            +++.|++|++|+. +|++.+.+.+
T Consensus       339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~  418 (1045)
T 1k32_A          339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS  418 (1045)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence            11            111 11122   11                            6778899999987 6787777778


Q ss_pred             CCCCCCCcEEEeCCCccEEEEcc-C----------CeEEEEeeCCceeeec
Q psy682          233 PSGFASPESVVMSREGVIVVNYE-R----------GHIAAFTMNGNRLRHE  272 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~~-~----------~~~~~~s~nG~~las~  272 (330)
                      |.+  .|.+++|||||+.||+++ +          ..+.+|..++..+..+
T Consensus       419 ~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          419 REA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             SSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             CCC--CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            888  899999999999998873 2          2566666554444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.58  E-value=9.4e-15  Score=148.82  Aligned_cols=205  Identities=10%  Similarity=-0.002  Sum_probs=128.1

Q ss_pred             ccCCCcEEEeecccccccceeecCCC---ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDS---SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~---~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      .+.||+|++|++.+|+....+.+|..   .|.+++|||||+.                                      
T Consensus        33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~--------------------------------------   74 (723)
T 1xfd_A           33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY--------------------------------------   74 (723)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE--------------------------------------
T ss_pred             EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE--------------------------------------
Confidence            36789999999999998888888876   4999999999887                                      


Q ss_pred             cEEEEEc-------CCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccce
Q psy682           80 SVVTVTA-------NHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKL  151 (330)
Q Consensus        80 ~~v~vS~-------~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~  151 (330)
                       +++++.       +.+..+.+|+.+++....+..+.. ....+.++.|||||+ ++..+.   ..++.+.+...-...+
T Consensus        75 -l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A           75 -ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             -EEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEE
T ss_pred             -EEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEE
Confidence             122222       224678999998776544432211 012467899999998 554222   2344444322111111


Q ss_pred             -ee---------------------eeeEEEEecCCCeEEEeeccCC----------------------------------
Q psy682          152 -RV---------------------RHNCFVTTVDSRFLLACGFWDN----------------------------------  175 (330)
Q Consensus       152 -~~---------------------~~~~~~~spDg~~i~asg~~D~----------------------------------  175 (330)
                       ..                     +..++++||||++|+.+. .|.                                  
T Consensus       150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA-INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE-EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE-ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence             11                     114788999999966654 332                                  


Q ss_pred             eEEEeeecccccccccccCC------CCcE----EEe--H-HHHHhhhccCCCcEEEEcc-cCceeeecCCC-CCCCCC-
Q psy682          176 SFREPFTTMYLALQEGKFDH------PNRL----FSS--I-SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP-SGFASP-  239 (330)
Q Consensus       176 tirl~w~~~~g~l~~~l~gH------~d~V----iaS--t-~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h-~~~~~v-  239 (330)
                      +|++ |++.+++....+..|      ...+    ++.  . +..+...++.+++|.+|+. +|++.+.+..+ .+  .+ 
T Consensus       229 ~l~~-~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~  305 (723)
T 1xfd_A          229 SLHV-IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA--WLH  305 (723)
T ss_dssp             EEEE-EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS--CCC
T ss_pred             EEEE-EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC--EEe
Confidence            7888 999888765556554      3333    111  1 1111113445678888976 67777766543 33  44 


Q ss_pred             ---cEEEeCCCccEEEEc
Q psy682          240 ---ESVVMSREGVIVVNY  254 (330)
Q Consensus       240 ---~~v~fS~dG~~l~s~  254 (330)
                         ..++|||||+.|+..
T Consensus       306 ~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          306 RQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCCEECTTSCSEEEE
T ss_pred             ccCCCceEcCCCCeEEEE
Confidence               389999999977643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.58  E-value=6.8e-15  Score=150.52  Aligned_cols=254  Identities=11%  Similarity=0.043  Sum_probs=156.2

Q ss_pred             CcEEEeeccccc--ccceeecCCCceeEEEeCCCCCc------Ccceee-----------eecCcc--------------
Q psy682            7 GIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKY------SPMMFS-----------TVLDDV--------------   53 (330)
Q Consensus         7 ~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~------~~l~~~-----------~~~~d~--------------   53 (330)
                      ++|++|++.+|+  .+..+..|...+.+++|||||+.      ..+...           ..+...              
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence            789999998773  56778899999999999999996      111111           111111              


Q ss_pred             --EEEEEeCCCCCeeEeeeccceecc--------CC--cEEEE------EcCCcceEEEeCCCC-CCcccCC---CCCCC
Q psy682           54 --CMSLKFPSNSPICHVTANTYVTLH--------MP--SVVTV------TANHQFAINRWNPDY-AASIQSP---SYAET  111 (330)
Q Consensus        54 --~~~v~Fs~~~~v~~~~~~~~~~~~--------~~--~~v~v------S~~~~~tv~lW~~~~-~~~~~~~---~h~~~  111 (330)
                        +..+.|||||+.|++.........        +.  ....+      ..+....|.+|+.++ +......   +|.  
T Consensus       209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~--  286 (741)
T 2ecf_A          209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD--  286 (741)
T ss_dssp             CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS--
T ss_pred             ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc--
Confidence              356889999998766643210000        00  00000      011233688888877 6544332   243  


Q ss_pred             CCCCCCCccccCCCc-eeccCCCC---CCCcceeccCCC-Cccceeeee-------eEEEEecCCCeEEEeeccCCeEEE
Q psy682          112 PGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGDN-FSQKLRVRH-------NCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       112 ~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~~-~~~~~~~~~-------~~~~~spDg~~i~asg~~D~tirl  179 (330)
                        ..+..+.| |||+ ++..+.+.   ...++.+.+... ..+.+..+.       .+++|+|||++ +.+++.|++++|
T Consensus       287 --~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~g~~~l  362 (741)
T 2ecf_A          287 --IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI-LWSSERTGFQHL  362 (741)
T ss_dssp             --EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE-EEEECTTSSCEE
T ss_pred             --eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE-EEEecCCCccEE
Confidence              24567999 9999 44322211   112233332211 111112221       36789999996 555668998998


Q ss_pred             eeecc-cccccccccCCCCcE--E--Ee----HHHHHhhhccCCC--cEEEEcc--cCceeeecCCCCCCCCCcEEEeCC
Q psy682          180 PFTTM-YLALQEGKFDHPNRL--F--SS----ISLAWKNCQRDTS--DVKVHTT--FGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       180 ~w~~~-~g~l~~~l~gH~d~V--i--aS----t~~lW~~SgS~Dg--tvkl~~~--~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                       |..+ +|+ ...+.+|...|  +  .|    .+..   +++.|+  +++||..  +|+.++.|.+ ..  .+.+++|||
T Consensus       363 -~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~---~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~--~~~~~~~sp  434 (741)
T 2ecf_A          363 -YRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYF---RAGIESARESQIYAVPLQGGQPQRLSK-AP--GMHSASFAR  434 (741)
T ss_dssp             -EEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEE---EECSSCTTCBEEEEEETTCCCCEECCC-SC--SEEEEEECT
T ss_pred             -EEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEE---EEeCCCCceEEEEEEEcCCCCeeeccc-CC--CceEEEECC
Confidence             8764 466 66777776655  2  23    2222   667777  9999975  5888888887 44  689999999


Q ss_pred             CccEEEEc-c-C---CeEEEEeeCCceeeeccC
Q psy682          247 EGVIVVNY-E-R---GHIAAFTMNGNRLRHESH  274 (330)
Q Consensus       247 dG~~l~s~-~-~---~~~~~~s~nG~~las~~~  274 (330)
                      ||+.|+.. + .   ..+.++..+|+.+..+..
T Consensus       435 dg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~  467 (741)
T 2ecf_A          435 NASVYVDSWSNNSTPPQIELFRANGEKIATLVE  467 (741)
T ss_dssp             TSSEEEEEEEETTEEEEEEEEETTSCEEECSSC
T ss_pred             CCCEEEEEecCCCCCCeEEEEEcCCCeEEEecc
Confidence            99988776 2 2   358888888987776653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=4.2e-13  Score=125.39  Aligned_cols=252  Identities=12%  Similarity=0.091  Sum_probs=148.2

Q ss_pred             ccCCCcEEEeecc--cccccceeecCCCceeEEEeCCCCCcCcceeeee---cCccEEEEEeCCC-CCeeEeeec-----
Q psy682            3 GGDKGIVEVWRTF--NLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV---LDDVCMSLKFPSN-SPICHVTAN-----   71 (330)
Q Consensus         3 gs~d~~V~lW~~~--~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~---~~d~~~~v~Fs~~-~~v~~~~~~-----   71 (330)
                      ++.++.|.+|+++  +|++......|......++|||||+.  +.+...   ....+....+.++ +.+..+...     
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~--l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~  100 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKF--VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA  100 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSE--EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCE--EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence            4568899999874  45543332238888999999999986  222121   2246666677776 544333211     


Q ss_pred             --cceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCC---CCCCCC-------CCCCCCccccCCCc-eeccCCCCCCC
Q psy682           72 --TYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSP---SYAETP-------GSPPGNLPLTLDPI-LTHPTSNNNAP  137 (330)
Q Consensus        72 --~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~---~h~~~~-------~~~~~~l~fs~D~~-l~~~s~~~~~~  137 (330)
                        ....+ ....+.++...+++|.+|+.+... +....   .|.+.-       ...+.++.|+||++ +.+ +..++..
T Consensus       101 ~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~  178 (361)
T 3scy_A          101 DPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA-DDLGTDQ  178 (361)
T ss_dssp             CEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE-EETTTTE
T ss_pred             CcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE-EeCCCCE
Confidence              11233 333445555578899999986432 22211   111100       01124599999998 443 2222333


Q ss_pred             cceeccCCC--------Ccc-----cee----eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccc--ccccc---CC
Q psy682          138 VPKRHLGDN--------FSQ-----KLR----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL--QEGKF---DH  195 (330)
Q Consensus       138 ~~~~~l~~~--------~~~-----~~~----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l--~~~l~---gH  195 (330)
                      +..+.+...        +..     ...    .....++|+|||+++++++..+++|++ |++++|++  ++.+.   ++
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v-~~~~~g~~~~~~~~~~~~~~  257 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA-FRYADGMLDEIQTVAADTVN  257 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE-EEEETTEEEEEEEEESCSSC
T ss_pred             EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE-EEecCCceEEeEEEecCCCC
Confidence            444433211        100     000    112478899999998888878999999 99987765  33232   22


Q ss_pred             CC---cE-EEe---HHHHHhhhccC-CCcEEEEcc---cCc--eeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEE
Q psy682          196 PN---RL-FSS---ISLAWKNCQRD-TSDVKVHTT---FGD--LLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIA  260 (330)
Q Consensus       196 ~d---~V-iaS---t~~lW~~SgS~-Dgtvkl~~~---~G~--ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~  260 (330)
                      ..   .+ +..   .+.+   +... +++|.+|+.   +|+  .+..+.. ..  .+..++|||||+.|+.+  .++.+.
T Consensus       258 ~~~~~~i~~spdg~~l~v---~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~--~~~~~~~spdg~~l~~~~~~~~~v~  331 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYA---SNRLKADGVAIFKVDETNGTLTKVGYQLT-GI--HPRNFIITPNGKYLLVACRDTNVIQ  331 (361)
T ss_dssp             CCCEEEEEECTTSSEEEE---EECSSSCEEEEEEECTTTCCEEEEEEEEC-SS--CCCEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCcccEEECCCCCEEEE---ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CC--CCceEEECCCCCEEEEEECCCCCEE
Confidence            22   12 222   1211   4555 689999976   466  4555554 33  78999999999977776  467899


Q ss_pred             EEeeC
Q psy682          261 AFTMN  265 (330)
Q Consensus       261 ~~s~n  265 (330)
                      +|.+|
T Consensus       332 v~~~d  336 (361)
T 3scy_A          332 IFERD  336 (361)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            98776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.57  E-value=4.5e-14  Score=142.87  Aligned_cols=246  Identities=11%  Similarity=-0.011  Sum_probs=158.9

Q ss_pred             cccCCCcEEEeec--ccccccceeecCCCceeEEEeCC----CCCc-------------------Ccceeeee-------
Q psy682            2 SGGDKGIVEVWRT--FNLALLYAFPSCDSSVRSLALSH----DQKY-------------------SPMMFSTV-------   49 (330)
Q Consensus         2 sgs~d~~V~lW~~--~~g~~l~tl~gH~~~V~svafSp----dg~~-------------------~~l~~~~~-------   49 (330)
                      +++.|++|++||+  .+++.+.+++ +...++.|+|||    ||++                   .++...+.       
T Consensus       195 v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          195 VIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            5677899999999  8899999998 456789999999    9997                   11111111       


Q ss_pred             ---c-CccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCccc--CCCCCCCCCCCCCCccccC
Q psy682           50 ---L-DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTL  123 (330)
Q Consensus        50 ---~-~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~--~~~h~~~~~~~~~~l~fs~  123 (330)
                         | +..+..+.|+|+++.                +.++...+++|.+|+........  ...+.    ..+..+.|+|
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~----------------~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~----~~~~~~~~sp  333 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPE----------------FIVNVKETGKVLLVNYKDIDNLTVTSIGAA----PFLHDGGWDS  333 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSE----------------EEEEETTTTEEEEEECTTSSSCEEEEEECC----SSCCCEEECT
T ss_pred             cccccCCceEEEEECCCCCE----------------EEEEECCCCeEEEEEecCCCcceeEEeccC----cCccCceECC
Confidence               1 124566667776665                35777788899999986533211  22332    3466799999


Q ss_pred             CCceeccCCCCCCCcceeccCC-CCccceee----ee---eEEEEecCCCeEEEeec-cCCeEEEeeeccc-------cc
Q psy682          124 DPILTHPTSNNNAPVPKRHLGD-NFSQKLRV----RH---NCFVTTVDSRFLLACGF-WDNSFREPFTTMY-------LA  187 (330)
Q Consensus       124 D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~----~~---~~~~~spDg~~i~asg~-~D~tirl~w~~~~-------g~  187 (330)
                      |++++..++..+..+..+.+.. .+..++.+    |.   ..+ ++||+..++++++ .|++|++ |++++       ++
T Consensus       334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v-~d~~~~~~~~~~~~  411 (543)
T 1nir_A          334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL-IGTDPKNHPQYAWK  411 (543)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE-EECCTTTCTTTBTS
T ss_pred             CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE-EEeCCCCCchhcCe
Confidence            9994322222233333343321 12223332    21   122 5788445566664 6899999 99988       89


Q ss_pred             ccccccCCCCcE--EE-e--HHHHHhhhcc-------CCCcEEEEcc-cCcee-eec--------CCCCCCCCCcEEEeC
Q psy682          188 LQEGKFDHPNRL--FS-S--ISLAWKNCQR-------DTSDVKVHTT-FGDLL-RSL--------DPPSGFASPESVVMS  245 (330)
Q Consensus       188 l~~~l~gH~d~V--ia-S--t~~lW~~SgS-------~Dgtvkl~~~-~G~ll-~tL--------~~h~~~~~v~~v~fS  245 (330)
                      +++++.+|...+  ++ +  --.||  +++       .|++|.+|+. +++.+ +.|        ..|..  +|..+.|+
T Consensus       412 ~v~~l~~~g~~~~~v~~~pdg~~l~--v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~  487 (543)
T 1nir_A          412 KVAELQGQGGGSLFIKTHPKSSHLY--VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK--RVVQPEYN  487 (543)
T ss_dssp             EEEEEECSCSCCCCEECCTTCCEEE--ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC--EEEEEEEC
T ss_pred             EEEEEEcCCCCceEEEcCCCCCcEE--EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC--ceEeccCC
Confidence            999999997664  22 1  22344  233       2789999976 57766 454        34444  89999999


Q ss_pred             CCccEEEEc-----c-CCeEEEEe-eCCceeeeccC
Q psy682          246 REGVIVVNY-----E-RGHIAAFT-MNGNRLRHESH  274 (330)
Q Consensus       246 ~dG~~l~s~-----~-~~~~~~~s-~nG~~las~~~  274 (330)
                      |||+.|..+     + ++.|++|. ..|++++..+.
T Consensus       488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          488 KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             SSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            999998854     2 57888885 44666666653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.57  E-value=6.2e-14  Score=130.13  Aligned_cols=218  Identities=12%  Similarity=0.157  Sum_probs=127.2

Q ss_pred             CCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeee-cCccEEEEEeCCCCCeeEeeec----------
Q psy682            5 DKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDVCMSLKFPSNSPICHVTAN----------   71 (330)
Q Consensus         5 ~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~-~~d~~~~v~Fs~~~~v~~~~~~----------   71 (330)
                      .++.|++|++.+|+  .+..+..|...+..|+|||||+.   .+... .+..+..+...+++..-.+...          
T Consensus        61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~---l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~  137 (347)
T 3hfq_A           61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL---VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE  137 (347)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE---EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred             CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE---EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence            36899999997765  55666778999999999999986   12122 2233444444334332222110          


Q ss_pred             ------cceeccCCcEEEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceecc
Q psy682           72 ------TYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL  143 (330)
Q Consensus        72 ------~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l  143 (330)
                            ..+.+++++.+.++...+..|++|+.+ .+.+.............+..+.|+||++ +.++ ...+..+..+.+
T Consensus       138 ~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~  216 (347)
T 3hfq_A          138 QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKY  216 (347)
T ss_dssp             CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEE
T ss_pred             ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEe
Confidence                  013445555455777778889999987 3332211110111112455689999998 4432 222222222322


Q ss_pred             C---CCCc--ccee---------eeeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccccCCCCcEEEeHHHHHh
Q psy682          144 G---DNFS--QKLR---------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGKFDHPNRLFSSISLAWK  208 (330)
Q Consensus       144 ~---~~~~--~~~~---------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l~gH~d~ViaSt~~lW~  208 (330)
                      .   +.+.  +.+.         .....++|+|||++|+++...+++|++ |+++. |++                    
T Consensus       217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v-~~~~~~g~~--------------------  275 (347)
T 3hfq_A          217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV-FAVTADGHL--------------------  275 (347)
T ss_dssp             ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE-EEECGGGCE--------------------
T ss_pred             cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE-EEECCCCcE--------------------
Confidence            1   1110  0000         123468899999998888878999999 99852 211                    


Q ss_pred             hhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeC
Q psy682          209 NCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  265 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~n  265 (330)
                                      +.+.++..+..  .+..++|||||+.|+.+  +++.+.+|.+|
T Consensus       276 ----------------~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          276 ----------------TLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ----------------EEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ----------------EEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence                            11222333333  68999999999977776  35789999765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=2.3e-14  Score=146.07  Aligned_cols=225  Identities=10%  Similarity=-0.038  Sum_probs=128.0

Q ss_pred             ccCCCcEEEeeccccccc-ceeecCC-----------------CceeEEEeCCCCCc-----Cccee----------eee
Q psy682            3 GGDKGIVEVWRTFNLALL-YAFPSCD-----------------SSVRSLALSHDQKY-----SPMMF----------STV   49 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l-~tl~gH~-----------------~~V~svafSpdg~~-----~~l~~----------~~~   49 (330)
                      ++.|+ | +||+.+|+.+ ..+..|.                 ..|.+++||||+.+     ..+..          ...
T Consensus        41 ~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~  118 (706)
T 2z3z_A           41 IEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFD  118 (706)
T ss_dssp             EETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             EeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEECCCCceEEccC
Confidence            44566 8 9999999885 5665554                 56999999999444     00100          112


Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC-----CCcccCC-CCCCCC----------C
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY-----AASIQSP-SYAETP----------G  113 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~-----~~~~~~~-~h~~~~----------~  113 (330)
                      +...+..++|||||+.+                 |.. .+..|++|+.++     +...+.. .+...+          .
T Consensus       119 ~~~~~~~~~~SpdG~~l-----------------a~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~  180 (706)
T 2z3z_A          119 TNEETASLDFSPVGDRV-----------------AYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF  180 (706)
T ss_dssp             CTTCCTTCEECTTSSEE-----------------EEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred             CcccccCCcCCCCCCEE-----------------EEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence            22334445566666653                 332 457899999976     5544432 222110          0


Q ss_pred             CCCCCccccCCCc-eeccCCC-------------------------------CCCCcceeccCCCCcccee------eee
Q psy682          114 SPPGNLPLTLDPI-LTHPTSN-------------------------------NNAPVPKRHLGDNFSQKLR------VRH  155 (330)
Q Consensus       114 ~~~~~l~fs~D~~-l~~~s~~-------------------------------~~~~~~~~~l~~~~~~~~~------~~~  155 (330)
                      ..+.++.||||++ ++.++.+                               ....+..+.+...-...+.      ...
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  260 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL  260 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence            1147899999999 5543311                               1122233333211000011      123


Q ss_pred             eEEEEecCCCeEEEeeccCC-----eEEEeeecccc-cccccccC-CCC-------cEEEe----HHHHHhhhccCCCcE
Q psy682          156 NCFVTTVDSRFLLACGFWDN-----SFREPFTTMYL-ALQEGKFD-HPN-------RLFSS----ISLAWKNCQRDTSDV  217 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~-----tirl~w~~~~g-~l~~~l~g-H~d-------~ViaS----t~~lW~~SgS~Dgtv  217 (330)
                      .+++|+|||++|++++ .|+     +|++ |+.++| ++...... +..       ..+..    .. +|  +++.||++
T Consensus       261 ~~~~~spdg~~l~~~~-~~~~~~~~~v~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~--~~~~~g~~  335 (706)
T 2z3z_A          261 TNLSWSPDENILYVAE-VNRAQNECKVNA-YDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IW--QSRRDGWN  335 (706)
T ss_dssp             EEEEECTTSSEEEEEE-ECTTSCEEEEEE-EETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EE--EECTTSSC
T ss_pred             eeEEEECCCCEEEEEE-eCCCCCeeEEEE-EECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EE--EEccCCcc
Confidence            4788999999866554 565     8999 999888 33222211 111       12321    11 11  67889999


Q ss_pred             EEEcc--cCceeeecCCCCCCCCCcE-EEeCCCccEEEEc
Q psy682          218 KVHTT--FGDLLRSLDPPSGFASPES-VVMSREGVIVVNY  254 (330)
Q Consensus       218 kl~~~--~G~ll~tL~~h~~~~~v~~-v~fS~dG~~l~s~  254 (330)
                      +||..  +|+.++.|.+|..  .|.. ++|||||+.|+.+
T Consensus       336 ~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          336 HLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             EEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEE
Confidence            99954  6899999998876  6776 8999999877554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=8.9e-15  Score=129.39  Aligned_cols=201  Identities=10%  Similarity=-0.036  Sum_probs=125.8

Q ss_pred             CCCcEEEeeccc-ccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            5 DKGIVEVWRTFN-LALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         5 ~d~~V~lW~~~~-g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      .++.|++|++.+ ++....+.+|. ..|.+++|||||+.                                       ++
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---------------------------------------l~  100 (297)
T 2ojh_A           60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL---------------------------------------YA  100 (297)
T ss_dssp             ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE---------------------------------------EE
T ss_pred             cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE---------------------------------------EE
Confidence            378999999988 88777777774 77888888888877                                       23


Q ss_pred             EEEcCCcceEEEeC--CCCCCcccCCCCCCCCCCCCCCccccCCCc-ee-ccCCCCCCCcceeccCCCCcccee---eee
Q psy682           83 TVTANHQFAINRWN--PDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT-HPTSNNNAPVPKRHLGDNFSQKLR---VRH  155 (330)
Q Consensus        83 ~vS~~~~~tv~lW~--~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~-~~s~~~~~~~~~~~l~~~~~~~~~---~~~  155 (330)
                      .++.+.+..+++|.  .++........+.     .+..+.|+||++ ++ ++..++...++...+...-...+.   ...
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A          101 ISDKVEFGKSAIYLLPSTGGTPRLMTKNL-----PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             EEECTTTSSCEEEEEETTCCCCEECCSSS-----SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EEEeCCCCcceEEEEECCCCceEEeecCC-----CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            34423333345554  4455444444442     356789999998 44 222223223333322211111111   123


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecc-cccccccccCCCCcEE----Ee--HHHHHhhhccCC-----------CcE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTM-YLALQEGKFDHPNRLF----SS--ISLAWKNCQRDT-----------SDV  217 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l~~~l~gH~d~Vi----aS--t~~lW~~SgS~D-----------gtv  217 (330)
                      .+++++|||++|+.++..|+.+++ |.++ .++....+..|...+.    ..  ...+   .++.|           +.|
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~---~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQI-WRVRVDGSSVERITDSAYGDWFPHPSPSGDKVV---FVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEE-EEEETTSSCEEECCCCSEEEEEEEECTTSSEEE---EEEEETTCCSCCSSEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccE-EEECCCCCCcEEEecCCcccCCeEECCCCCEEE---EEEcCCCCCcccccCceEE
Confidence            578899999998877767999999 9886 4666667777776551    11  1111   23333           568


Q ss_pred             EEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          218 KVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       218 kl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      .+|+.+ |+.  +..+.+|..  .+..++|||||+.|+.++
T Consensus       252 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDLFGGQG--TMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             EEEETTSCSCEEEEEEEESTT--TSCSCCBCTTSSEEEEEE
T ss_pred             EEEecCCCCceeeeccCCCCc--ccccceECCCCCEEEEEE
Confidence            889875 444  444557777  899999999999888874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=1.2e-12  Score=122.35  Aligned_cols=216  Identities=11%  Similarity=0.097  Sum_probs=139.4

Q ss_pred             CcEEEeecccccccceee-cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEE
Q psy682            7 GIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVT   85 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS   85 (330)
                      ++|.+|+..+|+.+..+. ++-...++|||+|||++                                         .|+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l-----------------------------------------~v~  107 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY-----------------------------------------WVT  107 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE-----------------------------------------EEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE-----------------------------------------EEE
Confidence            578888887777766554 45556777777777665                                         255


Q ss_pred             cCCcceEEEeCCCCC--CcccCC-----CCCCCCCCCCCCccccC-CCceeccCCCCCCCcceeccCCCCcccee-----
Q psy682           86 ANHQFAINRWNPDYA--ASIQSP-----SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKLR-----  152 (330)
Q Consensus        86 ~~~~~tv~lW~~~~~--~~~~~~-----~h~~~~~~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-----  152 (330)
                      ...+..|++|++++.  .+.+..     |....-...+..++|+| ++.+.++.+..+..+......+.+...+.     
T Consensus       108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~  187 (329)
T 3fvz_A          108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG  187 (329)
T ss_dssp             ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred             ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence            556667888888766  233321     11111123466799999 78854422112233333332222222121     


Q ss_pred             --------eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE----------EEeHHHHHhhhcc
Q psy682          153 --------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL----------FSSISLAWKNCQR  212 (330)
Q Consensus       153 --------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V----------iaSt~~lW~~SgS  212 (330)
                              .....++++||+..|+++.+.+++|++ |+.++|+++..+.  ++.+.+          +++.-.+|- +.+
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v-~~~  265 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC-FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYF-GDQ  265 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE-EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCT-TCS
T ss_pred             CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE-EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEe-ccC
Confidence                    113578899995566888888999999 9998798877763  233322          222111111 677


Q ss_pred             CCCcEEEEc-ccCceeeecC---CCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCc
Q psy682          213 DTSDVKVHT-TFGDLLRSLD---PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN  267 (330)
Q Consensus       213 ~Dgtvkl~~-~~G~ll~tL~---~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~  267 (330)
                      .+.+|++|+ .+|+++.++.   ++..  .|..|+|+|||+++|+. .+++|..|.++|+
T Consensus       266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          266 EPVQGFVMNFSSGEIIDVFKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCCEEEEETTTCCEEEEECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CCcEEEEEEcCCCeEEEEEcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            888999997 5899999984   4555  79999999999888887 5889999999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=147.62  Aligned_cols=211  Identities=10%  Similarity=0.034  Sum_probs=129.5

Q ss_pred             cCCCcEEEeecccccccceeecCCC---ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDS---SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~---~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      +.|++|++|++.+|+....+.+|..   .|.+++|||||+.                                       
T Consensus        33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~---------------------------------------   73 (719)
T 1z68_A           33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF---------------------------------------   73 (719)
T ss_dssp             CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE---------------------------------------
T ss_pred             cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe---------------------------------------
Confidence            4689999999999888777777755   4889999998887                                       


Q ss_pred             EEEEEc-------CCcceEEEeCCCCCCc---ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc
Q psy682           81 VVTVTA-------NHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ  149 (330)
Q Consensus        81 ~v~vS~-------~~~~tv~lW~~~~~~~---~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~  149 (330)
                      ++.++.       +.+.+|++|+.+++..   ..+.       ..+.++.|||||+ ++.. .  +..+..+.+...-..
T Consensus        74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-------~~~~~~~~SPDG~~la~~-~--~~~i~~~~~~~g~~~  143 (719)
T 1z68_A           74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-------RPIQYLCWSPVGSKLAYV-Y--QNNIYLKQRPGDPPF  143 (719)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-------SSBCCEEECSSTTCEEEE-E--TTEEEEESSTTSCCE
T ss_pred             EEEEecCceeEEeecceEEEEEECCCCccccceecC-------cccccceECCCCCEEEEE-E--CCeEEEEeCCCCCcE
Confidence            222332       2368899999987765   3331       3467799999999 5532 2  223444443221100


Q ss_pred             ce--ee--------------------eeeEEEEecCCCeEEEeeccCC--------------------------------
Q psy682          150 KL--RV--------------------RHNCFVTTVDSRFLLACGFWDN--------------------------------  175 (330)
Q Consensus       150 ~~--~~--------------------~~~~~~~spDg~~i~asg~~D~--------------------------------  175 (330)
                      .+  .+                    ...++++||||++|+.++ .|.                                
T Consensus       144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~  222 (719)
T 1z68_A          144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE-FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP  222 (719)
T ss_dssp             ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE-EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred             EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE-ECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence            01  01                    113788999999966554 442                                


Q ss_pred             --eEEEeeeccccccc--------ccccCCCCcEE----Ee--HHHHHhhhccCCCc--EEEEc----c-cCceeeec--
Q psy682          176 --SFREPFTTMYLALQ--------EGKFDHPNRLF----SS--ISLAWKNCQRDTSD--VKVHT----T-FGDLLRSL--  230 (330)
Q Consensus       176 --tirl~w~~~~g~l~--------~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgt--vkl~~----~-~G~ll~tL--  230 (330)
                        +|++ |++++++..        ..+.+|...+.    ++  .+.+ ..+...+++  |.+|+    . +|+..+.+  
T Consensus       223 ~~~l~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~-~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~  300 (719)
T 1z68_A          223 VVRIFI-IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL-QWLKRVQNVSVLSICDFREDWQTWDCPKTQEH  300 (719)
T ss_dssp             EEEEEE-EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE-EEEESSTTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred             eeEEEE-EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEE-EEeccccCeEEEEEEcccCCCCCCceEEEEec
Confidence              7888 999887753        33456766551    11  1111 001223333  55567    4 46776666  


Q ss_pred             --CCCCCCCCCc-----EEEeCCCccEEEE--c-cCC--eEEEEeeCCce
Q psy682          231 --DPPSGFASPE-----SVVMSREGVIVVN--Y-ERG--HIAAFTMNGNR  268 (330)
Q Consensus       231 --~~h~~~~~v~-----~v~fS~dG~~l~s--~-~~~--~~~~~s~nG~~  268 (330)
                        .+|.+  .|.     .++|||||+.++.  . .++  .|..|..+|..
T Consensus       301 ~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          301 IEESRTG--WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EEECSSS--CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             ccccCCc--eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence              47776  676     8999999996544  2 222  46666655543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.50  E-value=3.1e-13  Score=124.13  Aligned_cols=222  Identities=11%  Similarity=0.050  Sum_probs=139.9

Q ss_pred             CCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee-----------eeecCc---------cEEEE
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF-----------STVLDD---------VCMSL   57 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~-----------~~~~~d---------~~~~v   57 (330)
                      +++|.+|+..+++.+.+++.. ..+.+++|+|||+.        ..+..           ...+..         ....+
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence            789999999999988888764 44789999999985        00111           111110         13445


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCC-CCCCCCCCCCCccccCCCc-eeccCCCCC
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETPGSPPGNLPLTLDPI-LTHPTSNNN  135 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~-h~~~~~~~~~~l~fs~D~~-l~~~s~~~~  135 (330)
                      .|+|++..+               +++..+.+..|.+|+........... +.    ..+..+.|+||+. +.+++.  +
T Consensus       147 ~~s~dg~~l---------------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~--~  205 (353)
T 3vgz_A          147 VADDATNTV---------------YISGIGKESVIWVVDGGNIKLKTAIQNTG----KMSTGLALDSEGKRLYTTNA--D  205 (353)
T ss_dssp             EEETTTTEE---------------EEEEESSSCEEEEEETTTTEEEEEECCCC----TTCCCCEEETTTTEEEEECT--T
T ss_pred             EECCCCCEE---------------EEEecCCCceEEEEcCCCCceEEEecCCC----CccceEEECCCCCEEEEEcC--C
Confidence            566666554               22222457789999987665443322 33    2467899999998 444222  2


Q ss_pred             CCcceeccCCC-Cccceee-------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCC-cE-EEeH-H
Q psy682          136 APVPKRHLGDN-FSQKLRV-------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN-RL-FSSI-S  204 (330)
Q Consensus       136 ~~~~~~~l~~~-~~~~~~~-------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d-~V-iaSt-~  204 (330)
                      ..+..+.+... ....+..       ....++++|||++++++...++.|.+ |+..+++++..+..+.. .+ +... -
T Consensus       206 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~-~d~~~~~~~~~~~~~~~~~~~~s~dg~  284 (353)
T 3vgz_A          206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV-VDTRNGNILAKVAAPESLAVLFNPARN  284 (353)
T ss_dssp             SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE-EETTTCCEEEEEECSSCCCEEEETTTT
T ss_pred             CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE-EECCCCcEEEEEEcCCCceEEECCCCC
Confidence            23333332111 1111111       12357899999998888877799999 99988887655543322 23 3321 1


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      .+|- +...|++|.+|+. +|+.++++..+.   .+..++|+|||+.|+.+
T Consensus       285 ~l~v-~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          285 EAYV-THRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSADGKTLYVS  331 (353)
T ss_dssp             EEEE-EETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTTSCEEEEE
T ss_pred             EEEE-EECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCCCCEEEEE
Confidence            1222 6678999999976 689998887643   58999999999955443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.48  E-value=2.2e-13  Score=123.76  Aligned_cols=227  Identities=10%  Similarity=0.027  Sum_probs=138.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCC-C-ceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCD-S-SVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~-~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      ++++.|++|++||+.+++.+.++.... . .+.+++|||||+.                                     
T Consensus         5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-------------------------------------   47 (337)
T 1pby_B            5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-------------------------------------   47 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-------------------------------------
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-------------------------------------
Confidence            467889999999999999888886433 2 4788889888876                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCccc-CC-CCCCCCCCCCCCccccCCCc-eeccCC------C----CCCCcceeccCC
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQ-SP-SYAETPGSPPGNLPLTLDPI-LTHPTS------N----NNAPVPKRHLGD  145 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~-~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~------~----~~~~~~~~~l~~  145 (330)
                         +.++++.+..|.+|+........ .. ++.......+..+.|+||++ ++++..      +    .+..+..+.+..
T Consensus        48 ---l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~  124 (337)
T 1pby_B           48 ---AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             ---EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             ---EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC
Confidence               23556667789999986655332 22 22000011466899999997 444221      0    123333444321


Q ss_pred             C-Cccceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC--CcE-EEe-HHHHHhhhccCCC---
Q psy682          146 N-FSQKLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP--NRL-FSS-ISLAWKNCQRDTS---  215 (330)
Q Consensus       146 ~-~~~~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~--d~V-iaS-t~~lW~~SgS~Dg---  215 (330)
                      . ..+.+..  ...+++++|||++|+++   ++.|++ |+++++++...+..+.  ..+ +.. -..+|- ++..++   
T Consensus       125 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~~~  199 (337)
T 1pby_B          125 LSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHV-MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN-QHESSGVMA  199 (337)
T ss_dssp             TEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEE-EETTTTEEEEEECSTTTTTTTBCCCBCCCCCC-CCTTTTEEE
T ss_pred             CcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEE-EECCCCcEeeeeeccccCCCceeCCCccEEee-eccCCCcee
Confidence            1 1111111  12468899999997776   688999 9999888766554433  111 111 111111 333333   


Q ss_pred             --------------------cEEEEcc-cCcee-eecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC-Cceeeec
Q psy682          216 --------------------DVKVHTT-FGDLL-RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHE  272 (330)
Q Consensus       216 --------------------tvkl~~~-~G~ll-~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n-G~~las~  272 (330)
                                          .|.+|+. +|++. ..+.++..  .+..++|||||+.|+.+ ++.+..|..+ |+.+...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV--FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS--CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred             eeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC--ceeeEEECCCCCEEEEe-CCeEEEEECCCCcCccee
Confidence                                3567765 45553 23444544  78899999999998887 6888888875 4555555


Q ss_pred             cCc
Q psy682          273 SHN  275 (330)
Q Consensus       273 ~~~  275 (330)
                      ...
T Consensus       277 ~~~  279 (337)
T 1pby_B          277 PLP  279 (337)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.46  E-value=4.6e-13  Score=136.30  Aligned_cols=244  Identities=6%  Similarity=-0.083  Sum_probs=137.7

Q ss_pred             CCCcEEEeecccccc--cceeecCCCceeEEEeCCCCCc------C-----------cceeeeecCcc------------
Q psy682            5 DKGIVEVWRTFNLAL--LYAFPSCDSSVRSLALSHDQKY------S-----------PMMFSTVLDDV------------   53 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~--l~tl~gH~~~V~svafSpdg~~------~-----------~l~~~~~~~d~------------   53 (330)
                      .+++|++|++.+|+.  +....+|...+.+++|||||+.      .           .......+...            
T Consensus        89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             ceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence            358899999998875  4445677778999999999987      0           11111122221            


Q ss_pred             ------EEEEEeCCCCCeeEeeecccee-----c------cCCcEEEEE------cCCcceEEEeCCCCCCc-ccCCCCC
Q psy682           54 ------CMSLKFPSNSPICHVTANTYVT-----L------HMPSVVTVT------ANHQFAINRWNPDYAAS-IQSPSYA  109 (330)
Q Consensus        54 ------~~~v~Fs~~~~v~~~~~~~~~~-----~------~~~~~v~vS------~~~~~tv~lW~~~~~~~-~~~~~h~  109 (330)
                            +..+.|||||+.|++.+.....     +      ..+.+..+.      .+.+.+|++|+.++... .++..+.
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~  248 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence                  2679999999988777533200     0      000011111      12345899999987663 4443331


Q ss_pred             CC--CCCCCCCccccCCCcee-ccCCCC--CCCcceeccCC-CCccceeee----e----eEEEEecCCCeEEEe-eccC
Q psy682          110 ET--PGSPPGNLPLTLDPILT-HPTSNN--NAPVPKRHLGD-NFSQKLRVR----H----NCFVTTVDSRFLLAC-GFWD  174 (330)
Q Consensus       110 ~~--~~~~~~~l~fs~D~~l~-~~s~~~--~~~~~~~~l~~-~~~~~~~~~----~----~~~~~spDg~~i~as-g~~D  174 (330)
                      ..  ....+..+.||||+++. ..+...  ...++.+.+.. ...+.+..+    .    ..++|||||+.|+.. +..|
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  328 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ  328 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence            00  01234569999999944 321111  11233333321 111111111    1    267899999987664 5566


Q ss_pred             C----e--EEEeee-ccccc--cccccc-CCCCcE-E--Ee----HHHHHhhhccCC--CcEEEEcc--cCc-eeeecCC
Q psy682          175 N----S--FREPFT-TMYLA--LQEGKF-DHPNRL-F--SS----ISLAWKNCQRDT--SDVKVHTT--FGD-LLRSLDP  232 (330)
Q Consensus       175 ~----t--irl~w~-~~~g~--l~~~l~-gH~d~V-i--aS----t~~lW~~SgS~D--gtvkl~~~--~G~-ll~tL~~  232 (330)
                      +    .  |.+ |+ ..+++  ....+. ++.+.+ +  .|    .+..   +++.|  ++++||..  .|. ..+.|.+
T Consensus       329 ~~~~~~~~l~~-~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~---~~~~~~~~~~~l~~~~~~~~~~~~~l~~  404 (723)
T 1xfd_A          329 GGRGKFYHITV-SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF---LSTEDLPRRRQLYSANTVGNFNRQCLSC  404 (723)
T ss_dssp             SSSSCEEEEEE-ECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE---EESSSCTTCCEEEEECSSTTCCCBCSST
T ss_pred             CCCcceeEEEE-EeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEE---EEcCCCCcceEEEEEeCCCCCCcceecc
Confidence            6    4  455 66 34444  144555 455543 1  12    2211   45555  89999975  343 5566765


Q ss_pred             ---CCCCCCCcEEEeCCCccEEEEc
Q psy682          233 ---PSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       233 ---h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                         |..  .+..++|||||+.||..
T Consensus       405 ~~~~~~--~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          405 DLVENC--TYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             TSSSSC--CCCEEEECTTSSEEEEE
T ss_pred             cccCCC--CeEEEEECCCCCEEEEE
Confidence               555  78999999999988765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.45  E-value=7.1e-13  Score=135.03  Aligned_cols=252  Identities=9%  Similarity=0.015  Sum_probs=149.0

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------Ccceeee----------------ecCcc---------
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------SPMMFST----------------VLDDV---------   53 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------~~l~~~~----------------~~~d~---------   53 (330)
                      .|++|++|++.+|+. ..+..|...+.+++|||||+.      ..+....                .+...         
T Consensus        99 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A           99 TQGGLVGFDMLARKV-TYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             ETTEEEEEETTTTEE-EEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             ECCEEEEEECCCCce-EEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence            468999999988764 456678888999999999986      1111111                11111         


Q ss_pred             -----EEEEEeCCCCCeeEeeeccceecc----------CCcEEE------EEcCCcceEEEeCCCCCCcccCC---CCC
Q psy682           54 -----CMSLKFPSNSPICHVTANTYVTLH----------MPSVVT------VTANHQFAINRWNPDYAASIQSP---SYA  109 (330)
Q Consensus        54 -----~~~v~Fs~~~~v~~~~~~~~~~~~----------~~~~v~------vS~~~~~tv~lW~~~~~~~~~~~---~h~  109 (330)
                           +..+.|||||+.|++.........          .+....      -..+.+..|++|+.+++......   .|.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 356778888887765542110000          000000      01235678999999876643332   232


Q ss_pred             CCCCCCCCCccccCCCc-eeccCCCCCC---CcceeccCCC-Ccccee-ee-------eeEEEEec--CCCeEEEeeccC
Q psy682          110 ETPGSPPGNLPLTLDPI-LTHPTSNNNA---PVPKRHLGDN-FSQKLR-VR-------HNCFVTTV--DSRFLLACGFWD  174 (330)
Q Consensus       110 ~~~~~~~~~l~fs~D~~-l~~~s~~~~~---~~~~~~l~~~-~~~~~~-~~-------~~~~~~sp--Dg~~i~asg~~D  174 (330)
                          ..+..+.|+||++ ++..+.+...   .+..+.+... -.+.+. ..       ..+++|+|  ||+++ +++..|
T Consensus       258 ----~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~  332 (706)
T 2z3z_A          258 ----KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD  332 (706)
T ss_dssp             ----CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT
T ss_pred             ----eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC
Confidence                2456799999999 5543322211   2233333211 111111 11       13468999  99975 555689


Q ss_pred             CeEEEeeecc-cccccccccCCCCcEE----Ee----HHHHHhhhccCCC--cEEE--EcccCceeeecCCCCCCCCCcE
Q psy682          175 NSFREPFTTM-YLALQEGKFDHPNRLF----SS----ISLAWKNCQRDTS--DVKV--HTTFGDLLRSLDPPSGFASPES  241 (330)
Q Consensus       175 ~tirl~w~~~-~g~l~~~l~gH~d~Vi----aS----t~~lW~~SgS~Dg--tvkl--~~~~G~ll~tL~~h~~~~~v~~  241 (330)
                      ++++| |..+ +++.+..+.+|...|.    .+    .+..   +++.|+  .++|  |+..+..++.|. |..  .+.+
T Consensus       333 g~~~l-~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~---~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~--~~~~  405 (706)
T 2z3z_A          333 GWNHL-YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF---ESTEASPLERHFYCIDIKGGKTKDLT-PES--GMHR  405 (706)
T ss_dssp             SSCEE-EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE---EESSSCTTCBEEEEEETTCCCCEESC-CSS--SEEE
T ss_pred             CccEE-EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE---EecCCCCceEEEEEEEcCCCCceecc-CCC--ceEE
Confidence            99999 9876 5777777777765552    12    2222   555665  3455  455444466676 445  6899


Q ss_pred             EEeCCCccEEEEc-cC----CeEEEEeeCCcee
Q psy682          242 VVMSREGVIVVNY-ER----GHIAAFTMNGNRL  269 (330)
Q Consensus       242 v~fS~dG~~l~s~-~~----~~~~~~s~nG~~l  269 (330)
                      ++|||||+.||.. ++    ..+.+|..++..+
T Consensus       406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~  438 (706)
T 2z3z_A          406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH  438 (706)
T ss_dssp             EEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred             EEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence            9999999988765 22    4599998877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.45  E-value=2.6e-13  Score=146.04  Aligned_cols=222  Identities=7%  Similarity=-0.073  Sum_probs=146.4

Q ss_pred             cccCCCcEEEeeccc-ccccceeecCCCceeEEEeCCCCCc------Cc----------ceeeee-----------cCcc
Q psy682            2 SGGDKGIVEVWRTFN-LALLYAFPSCDSSVRSLALSHDQKY------SP----------MMFSTV-----------LDDV   53 (330)
Q Consensus         2 sgs~d~~V~lW~~~~-g~~l~tl~gH~~~V~svafSpdg~~------~~----------l~~~~~-----------~~d~   53 (330)
                      +++.|++++||.++. |.....+.+|.. +..++|||||+.      ..          +....+           +...
T Consensus       219 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~  297 (1045)
T 1k32_A          219 ITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPS  297 (1045)
T ss_dssp             EECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGG
T ss_pred             EEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccc
Confidence            456789999998753 666777877774 678899999985      00          000011           2224


Q ss_pred             EEEEEeC-CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccC
Q psy682           54 CMSLKFP-SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPT  131 (330)
Q Consensus        54 ~~~v~Fs-~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s  131 (330)
                      +..+.|| |||+.+                 +.++ +..|.+|+.++........|.+   ..+..+.|+ |++ ++.++
T Consensus       298 v~~~~~S~pdG~~l-----------------a~~~-~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~s-dg~~l~~~s  355 (1045)
T 1k32_A          298 KFAEDFSPLDGDLI-----------------AFVS-RGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGD-TKVAFIHGT  355 (1045)
T ss_dssp             GGEEEEEECGGGCE-----------------EEEE-TTEEEEECTTSSBEEECSCCSC---EEEEEECSS-SEEEEEEEE
T ss_pred             cceeeecCCCCCEE-----------------EEEE-cCEEEEEcCCCCceEEccCCCc---ceEEeeeEc-CCCeEEEEE
Confidence            6667777 777764                 2222 5678999998777666656642   145678999 998 44322


Q ss_pred             CCCCCCcc-eeccCCCCccceee---eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEe-
Q psy682          132 SNNNAPVP-KRHLGDNFSQKLRV---RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSS-  202 (330)
Q Consensus       132 ~~~~~~~~-~~~l~~~~~~~~~~---~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaS-  202 (330)
                      .  ...++ .+.+...-...+..   ...+++|||||++|+ +++.|++|++ |++++|++...+.+|...|    ++. 
T Consensus       356 ~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la-~~~~~~~v~~-~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          356 R--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV-VANDRFEIMT-VDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             T--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE-EEETTSEEEE-EETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             C--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE-EECCCCeEEE-EECCCCceEEeccCCCCCccceEECCC
Confidence            2  33344 33432211112222   235788999999955 4557999999 9999998887776887664    222 


Q ss_pred             -HHHHHhhhccC----------CCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          203 -ISLAWKNCQRD----------TSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       203 -t~~lW~~SgS~----------Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                       ...+   +++.          +++|++|+..+..++.|.+|..  .+..++|||||+.|+.++
T Consensus       432 G~~la---~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~--~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          432 SRFIA---YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS--HDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             SCEEE---EEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS--BEEEEEECTTSCEEEEEE
T ss_pred             CCeEE---EEecCccccccCCCCCeEEEEECCCCcEEEeeCCCc--ccCCceEcCCCCEEEEEe
Confidence             2222   2222          3599999886555889999877  889999999999988874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.44  E-value=1.6e-12  Score=118.83  Aligned_cols=225  Identities=10%  Similarity=0.010  Sum_probs=135.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++++.|++|++||+.+|+.+.++..+. ..+.+++|+|||+.                                      
T Consensus        15 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--------------------------------------   56 (349)
T 1jmx_B           15 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT--------------------------------------   56 (349)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE--------------------------------------
T ss_pred             EEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE--------------------------------------
Confidence            467789999999999999888887654 25678888888765                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCccc-CC-CCCC-CCCCCCCCccccCCCc-eeccCCC----------CCCCcceeccCC
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQ-SP-SYAE-TPGSPPGNLPLTLDPI-LTHPTSN----------NNAPVPKRHLGD  145 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~-~~-~h~~-~~~~~~~~l~fs~D~~-l~~~s~~----------~~~~~~~~~l~~  145 (330)
                        +.++...+..|.+|+.+...... .. ++.. .....+..+.|+||++ +++++.+          ....+..+.+..
T Consensus        57 --~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           57 --AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             --EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence              23555667789999987654332 22 2200 0001256899999998 4442211          012333333321


Q ss_pred             -CCcc---ceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCC-C-------------------cE
Q psy682          146 -NFSQ---KLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-N-------------------RL  199 (330)
Q Consensus       146 -~~~~---~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-d-------------------~V  199 (330)
                       ...+   .+..  ...+++++|||+ +++++   +.|++ |+..+++++..+..+. +                   ..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (349)
T 1jmx_B          135 GLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG---PDIYK-MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE  209 (349)
T ss_dssp             GGGBCCSEEEECCSSCCCEEECTTSC-EEEES---SSEEE-ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             ccccceeeeccCCCcccceeECCCCc-EEEcc---CcEEE-EeCCCCceeccccccccCCccccCccceeeecCCCccee
Confidence             0001   1111  124778999999 67753   34999 9998888766554332 0                   00


Q ss_pred             EE-------e------------------------HHHHHhh----------hccC---------CCcEEEEcc-cCceee
Q psy682          200 FS-------S------------------------ISLAWKN----------CQRD---------TSDVKVHTT-FGDLLR  228 (330)
Q Consensus       200 ia-------S------------------------t~~lW~~----------SgS~---------Dgtvkl~~~-~G~ll~  228 (330)
                      +.       +                        ++..|..          +-|.         +++|.+|+. +|++++
T Consensus       210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~  289 (349)
T 1jmx_B          210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK  289 (349)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE
T ss_pred             EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEE
Confidence            00       0                        0000000          0112         568999975 688888


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~  273 (330)
                      ++..+ .  .+..++|||||+.|+.+ .++.+..|..+ |+.+....
T Consensus       290 ~~~~~-~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          290 AANLD-H--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEECS-S--CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEcCC-C--CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            88643 2  58899999999866655 57889999874 45555443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.43  E-value=1.4e-13  Score=135.28  Aligned_cols=106  Identities=12%  Similarity=0.021  Sum_probs=80.8

Q ss_pred             eeEEEEecC-CCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEcccCcee
Q psy682          155 HNCFVTTVD-SRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHTTFGDLL  227 (330)
Q Consensus       155 ~~~~~~spD-g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~~~G~ll  227 (330)
                      ..+++|+|+ +++ +++++.|++||+ |++.+++......+|.+.|..   +   ...+   +|+.||+|++|+.+|+..
T Consensus       152 V~~v~~~p~~~~~-las~s~Dg~v~i-wD~~~~~~~~~~~~~~~~v~~v~wspdg~~la---sgs~dg~v~iwd~~~~~~  226 (434)
T 2oit_A          152 VIDMKWNPTVPSM-VAVCLADGSIAV-LQVTETVKVCATLPSTVAVTSVCWSPKGKQLA---VGKQNGTVVQYLPTLQEK  226 (434)
T ss_dssp             EEEEEECSSCTTE-EEEEETTSCEEE-EEESSSEEEEEEECGGGCEEEEEECTTSSCEE---EEETTSCEEEECTTCCEE
T ss_pred             eEEEEECCCCCCE-EEEEECCCeEEE-EEcCCCcceeeccCCCCceeEEEEcCCCCEEE---EEcCCCcEEEEccCCccc
Confidence            368889998 555 777779999999 999888776667788877721   2   3333   899999999999889888


Q ss_pred             eecCCCCCC-----CCCcEEEeCCCccEEEEcc--CC------eEEEEeeC
Q psy682          228 RSLDPPSGF-----ASPESVVMSREGVIVVNYE--RG------HIAAFTMN  265 (330)
Q Consensus       228 ~tL~~h~~~-----~~v~~v~fS~dG~~l~s~~--~~------~~~~~s~n  265 (330)
                      +++..|...     ..|.+|+|++++.++++++  +|      .++.|.+.
T Consensus       227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            888776432     1689999999999997763  32      26677654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.43  E-value=9.5e-14  Score=144.04  Aligned_cols=225  Identities=10%  Similarity=0.012  Sum_probs=131.1

Q ss_pred             CCcEEEeecccccccceeecCCCceeE-----EEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRS-----LALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~s-----vafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ||+|++|++.+|+....+.+|...++.     ++|||||+.                        |+++.+......   
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~------------------------l~~~~~~~~~~r---   87 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF------------------------ILLEYNYVKQWR---   87 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSE------------------------EEEEEEEEECSS---
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCE------------------------EEEEECCeeeEE---
Confidence            899999999999988888999866444     444666655                        322211000000   


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc----------
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ----------  149 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~----------  149 (330)
                           -+....+.+|+..++...++.+|.+    .....+|||||+ ++.. .+  ..+..+.+.+.-..          
T Consensus        88 -----~~~~~~~~~~d~~~~~~~~l~~~~~----~~~~~~~SPdG~~la~~-~~--~~i~~~~~~~~~~~~lt~~g~~~~  155 (740)
T 4a5s_A           88 -----HSYTASYDIYDLNKRQLITEERIPN----NTQWVTWSPVGHKLAYV-WN--NDIYVKIEPNLPSYRITWTGKEDI  155 (740)
T ss_dssp             -----SCEEEEEEEEETTTTEECCSSCCCT----TEEEEEECSSTTCEEEE-ET--TEEEEESSTTSCCEECCSCCBTTT
T ss_pred             -----EccceEEEEEECCCCcEEEcccCCC----cceeeEECCCCCEEEEE-EC--CeEEEEECCCCceEEEcCCCCccc
Confidence                 0112446799998888777766653    567899999999 5532 22  22323322110000          


Q ss_pred             ceee------------eeeEEEEecCCCeEEEeeccCC------------------------------------eEEEee
Q psy682          150 KLRV------------RHNCFVTTVDSRFLLACGFWDN------------------------------------SFREPF  181 (330)
Q Consensus       150 ~~~~------------~~~~~~~spDg~~i~asg~~D~------------------------------------tirl~w  181 (330)
                      .+.+            ....+++||||++|+... .|.                                    +|++ |
T Consensus       156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~-~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v-~  233 (740)
T 4a5s_A          156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ-FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV-V  233 (740)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE-EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE-E
T ss_pred             eecCcccccccchhcCCCcceEECCCCCEEEEEE-EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE-E
Confidence            0111            112478999999955543 232                                    4677 8


Q ss_pred             eccc---c---ccccccc-----CCCCcE----EEe--H-HHHHhhhccCCCcEEEEcc-cCc------eeeec--CCCC
Q psy682          182 TTMY---L---ALQEGKF-----DHPNRL----FSS--I-SLAWKNCQRDTSDVKVHTT-FGD------LLRSL--DPPS  234 (330)
Q Consensus       182 ~~~~---g---~l~~~l~-----gH~d~V----iaS--t-~~lW~~SgS~Dgtvkl~~~-~G~------ll~tL--~~h~  234 (330)
                      ++++   |   +..+...     +|...+    +++  . +..|...++.+.+|++|+. +|+      .+++|  ++|.
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~  313 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT  313 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence            8877   6   3332222     355544    222  1 1122224556678888876 565      23444  5666


Q ss_pred             CCCCCc-----EEEeCCCccEEE-Ecc----CCeEEEEeeCCceeeecc
Q psy682          235 GFASPE-----SVVMSREGVIVV-NYE----RGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       235 ~~~~v~-----~v~fS~dG~~l~-s~~----~~~~~~~s~nG~~las~~  273 (330)
                      +  .|.     .++|||||+.++ ..+    ...|..|+.+|.....+.
T Consensus       314 ~--~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          314 G--WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             S--CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             c--eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence            6  555     899999999877 553    235778888887666555

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.42  E-value=3.1e-13  Score=135.19  Aligned_cols=171  Identities=9%  Similarity=-0.059  Sum_probs=107.3

Q ss_pred             CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCC--CCCCC--cceecc--CCCCcc--ceeeeeeEEE
Q psy682           88 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTS--NNNAP--VPKRHL--GDNFSQ--KLRVRHNCFV  159 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~--~~~~~--~~~~~l--~~~~~~--~~~~~~~~~~  159 (330)
                      .++++++|+.+++..+++..|..   ..+..+.|||| +++..+.  +++..  ++...+  .+...+  .... ....+
T Consensus        42 ~~g~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~-~~~~~  116 (582)
T 3o4h_A           42 SEGSVNAYLYDGGETVKLNREPI---NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP-MRILS  116 (582)
T ss_dssp             ETTEEEEEEEETTEEEECCSSCC---SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS-BEEEE
T ss_pred             cCCceeEEEEcCCCcEeeecccc---cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCC-ceeee
Confidence            48889999998888777776541   24667899999 7443222  12221  222332  111100  0111 23567


Q ss_pred             EecCCCe-EEEeeccCCeEEEeeecccccccccccCCCCcE-EEe--HHHHHhhhccCC----CcEEEEcccCceeeecC
Q psy682          160 TTVDSRF-LLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-FSS--ISLAWKNCQRDT----SDVKVHTTFGDLLRSLD  231 (330)
Q Consensus       160 ~spDg~~-i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-iaS--t~~lW~~SgS~D----gtvkl~~~~G~ll~tL~  231 (330)
                      ++|||+. +++++..|+. .+ |++++|++.+...++...+ ++.  ..++   +++.|    ++|.+|+..+..++.|.
T Consensus       117 ~s~dg~~~~~~s~~~~~~-~l-~d~~~g~~~~l~~~~~~~~~~spDG~~la---~~~~~~~~~~~i~~~d~~~g~~~~l~  191 (582)
T 3o4h_A          117 GVDTGEAVVFTGATEDRV-AL-YALDGGGLRELARLPGFGFVSDIRGDLIA---GLGFFGGGRVSLFTSNLSSGGLRVFD  191 (582)
T ss_dssp             EEECSSCEEEEEECSSCE-EE-EEEETTEEEEEEEESSCEEEEEEETTEEE---EEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred             eCCCCCeEEEEecCCCCc-eE-EEccCCcEEEeecCCCceEEECCCCCEEE---EEEEcCCCCeEEEEEcCCCCCceEee
Confidence            8999975 4566655554 48 9999888765554443223 222  2222   45555    77889987655567899


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEcc-CC--eEEEEeeCCceee
Q psy682          232 PPSGFASPESVVMSREGVIVVNYE-RG--HIAAFTMNGNRLR  270 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~--~~~~~s~nG~~la  270 (330)
                      +|.+  .+..++|||||+.|++++ ++  .|..|..++..+.
T Consensus       192 ~~~~--~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          192 SGEG--SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CSSC--EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             cCCC--ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            9888  899999999999999764 44  6888777765544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.41  E-value=5.1e-13  Score=131.19  Aligned_cols=114  Identities=11%  Similarity=0.016  Sum_probs=91.7

Q ss_pred             eeEEEEecCCCeEEE---eeccCCeEEEeeecccc-----cc------cccccCCCCcEE--E--e---HHHHHhhhccC
Q psy682          155 HNCFVTTVDSRFLLA---CGFWDNSFREPFTTMYL-----AL------QEGKFDHPNRLF--S--S---ISLAWKNCQRD  213 (330)
Q Consensus       155 ~~~~~~spDg~~i~a---sg~~D~tirl~w~~~~g-----~l------~~~l~gH~d~Vi--a--S---t~~lW~~SgS~  213 (330)
                      ..+++|+|||++|++   +|+.|++||+ |++.++     +.      +..+.+|.+.|.  +  .   ...+   +||.
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la---s~s~  170 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAF-FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA---VCLA  170 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEE-EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE---EEET
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEE-EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEE---EEEC
Confidence            468889999999765   7889999999 999766     11      466778988882  1  1   2334   8999


Q ss_pred             CCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCCceeeeccC
Q psy682          214 TSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHESH  274 (330)
Q Consensus       214 Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG~~las~~~  274 (330)
                      ||+|+||+. +++.+....+|..  .|.+++|||||+.||+|+ +++++.|.++|+.......
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~  231 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPC  231 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGG--CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECC
T ss_pred             CCeEEEEEcCCCcceeeccCCCC--ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccC
Confidence            999999976 5777777778887  899999999999999995 8899999999877766543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.38  E-value=7.7e-12  Score=117.03  Aligned_cols=253  Identities=8%  Similarity=-0.104  Sum_probs=137.4

Q ss_pred             CC--cEEEeecccccccceeecCCCceeEEEeCCCCCc-------Ccceee-----------eecCccE--EEEEeCCCC
Q psy682            6 KG--IVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------SPMMFS-----------TVLDDVC--MSLKFPSNS   63 (330)
Q Consensus         6 d~--~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~~l~~~-----------~~~~d~~--~~v~Fs~~~   63 (330)
                      +|  .|.+|++.+|+......+|...+.+++|||||+.       ..+...           ..+...+  ....++||+
T Consensus        57 ~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg  136 (388)
T 3pe7_A           57 DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC  136 (388)
T ss_dssp             TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS
T ss_pred             CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC
Confidence            55  4778888888888878888888888999999987       001110           1111111  112235666


Q ss_pred             CeeEeeeccceeccCCc-----EEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCC--
Q psy682           64 PICHVTANTYVTLHMPS-----VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNN--  134 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~-----~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~--  134 (330)
                      ..++..........+..     ....+.+.+..|.+|+..++.......+..    ....+.|+| |++ ++..+.+.  
T Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~~~~~~sp~dg~~l~~~~~~~~~  212 (388)
T 3pe7_A          137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ----WLGHPIYRPYDDSTVAFCHEGPHD  212 (388)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS----CEEEEEEETTEEEEEEEEECSCTT
T ss_pred             CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc----cccccEECCCCCCEEEEEEecCCC
Confidence            65432110000000000     000123445778999988777666554432    356789999 998 54433322  


Q ss_pred             --CCCcceeccCCCCccceee-----eeeEEEEecCCCeEEEeeccCC----eEEEeeecccccc--cccccC-------
Q psy682          135 --NAPVPKRHLGDNFSQKLRV-----RHNCFVTTVDSRFLLACGFWDN----SFREPFTTMYLAL--QEGKFD-------  194 (330)
Q Consensus       135 --~~~~~~~~l~~~~~~~~~~-----~~~~~~~spDg~~i~asg~~D~----tirl~w~~~~g~l--~~~l~g-------  194 (330)
                        ...++...+.+.-.+.+..     .....+|||||+.|+..+..++    .|.+ |++++|+.  +..+.+       
T Consensus       213 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~-~d~~~g~~~~l~~~~~~~~~~~~  291 (388)
T 3pe7_A          213 LVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS-ADPETLENRQLTSMPACSHLMSN  291 (388)
T ss_dssp             TSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE-ECTTTCCEEEEEEECCEEEEEEC
T ss_pred             CCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE-EecCCCceEEEEcCCCceeeeec
Confidence              2234444332211111211     2235679999998655544332    3888 99988874  223333       


Q ss_pred             CCCcEEEe--HHHHHhh------hccCCCcEEEEcccCceeeecCCCCCC---------CCCcEEEeCCCccEEEEcc--
Q psy682          195 HPNRLFSS--ISLAWKN------CQRDTSDVKVHTTFGDLLRSLDPPSGF---------ASPESVVMSREGVIVVNYE--  255 (330)
Q Consensus       195 H~d~ViaS--t~~lW~~------SgS~Dgtvkl~~~~G~ll~tL~~h~~~---------~~v~~v~fS~dG~~l~s~~--  255 (330)
                      +....++.  ..++...      ++..+..|.+|+..+..++.|..|...         ..+..++|||||+.|+..+  
T Consensus       292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence            22222333  1111111      125677899999876666777766441         0378899999999888764  


Q ss_pred             CCeEEEEe
Q psy682          256 RGHIAAFT  263 (330)
Q Consensus       256 ~~~~~~~s  263 (330)
                      .+...+|.
T Consensus       372 ~g~~~l~~  379 (388)
T 3pe7_A          372 HGKPALYL  379 (388)
T ss_dssp             TSSCEEEE
T ss_pred             CCceeEEE
Confidence            34444444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.36  E-value=1.7e-11  Score=115.78  Aligned_cols=253  Identities=10%  Similarity=0.011  Sum_probs=147.9

Q ss_pred             CcEEEeecc--cccccc--eee-cCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee------cccee
Q psy682            7 GIVEVWRTF--NLALLY--AFP-SCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA------NTYVT   75 (330)
Q Consensus         7 ~~V~lW~~~--~g~~l~--tl~-gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~------~~~~~   75 (330)
                      +.|.+|+++  +|++..  ... ++...+..++|||||++    ......+.+..+...+++++..+..      ...+.
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~----l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~   89 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKN----IYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRAND   89 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSE----EEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCE----EEEEccceEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence            568888763  555422  221 34557889999999986    2232333444444444666554321      22356


Q ss_pred             ccCCcE--EEEEcC-------------CcceEEEeCCCC-CCcc-cCCC--CCCCCCCCCCCccccCCCc-eeccCCCCC
Q psy682           76 LHMPSV--VTVTAN-------------HQFAINRWNPDY-AASI-QSPS--YAETPGSPPGNLPLTLDPI-LTHPTSNNN  135 (330)
Q Consensus        76 ~~~~~~--v~vS~~-------------~~~tv~lW~~~~-~~~~-~~~~--h~~~~~~~~~~l~fs~D~~-l~~~s~~~~  135 (330)
                      +++++.  ++++++             .++++++|+.+. +.+. ....  |.  ....+..+.|+|||+ +.+ +..++
T Consensus        90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~spdG~~l~~-~~~~~  166 (365)
T 1jof_A           90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ--ENTGIHGMVFDPTETYLYS-ADLTA  166 (365)
T ss_dssp             TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC--TTCCEEEEEECTTSSEEEE-EETTT
T ss_pred             ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC--CCCcceEEEECCCCCEEEE-EcCCC
Confidence            777776  455665             688899999863 2222 1111  11  123566899999998 443 22223


Q ss_pred             CCcceeccC--CCCc--ccee-----eeeeEEEEecCCCeEEEeeccCCeEEEeeecc--ccccc------ccc----cC
Q psy682          136 APVPKRHLG--DNFS--QKLR-----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM--YLALQ------EGK----FD  194 (330)
Q Consensus       136 ~~~~~~~l~--~~~~--~~~~-----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~g~l~------~~l----~g  194 (330)
                      ..+..+.+.  +.+.  ..+.     .....++|+|||+++++++..++++++ |+.+  +|++.      ..+    .+
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v-~~~~~~~g~~~~~~~~~~~~~~~~~g  245 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE-YVIDPATHMPVYTHHSFPLIPPGIPD  245 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE-EEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE-EEEeCCCCcEEEccceEEcCCCCcCC
Confidence            344444442  1111  1111     113568899999998888777899999 8764  56642      222    23


Q ss_pred             CCC------cE---E-Ee--HHHHHhhhccC-C----CcEEEEcc--cCceee---ecCCCCCCCCCcEEEeCC---Ccc
Q psy682          195 HPN------RL---F-SS--ISLAWKNCQRD-T----SDVKVHTT--FGDLLR---SLDPPSGFASPESVVMSR---EGV  249 (330)
Q Consensus       195 H~d------~V---i-aS--t~~lW~~SgS~-D----gtvkl~~~--~G~ll~---tL~~h~~~~~v~~v~fS~---dG~  249 (330)
                      |..      .+   . .|  --.|+- +... |    ++|.+|+.  +|++.+   .+..+..  .+..++|||   ||+
T Consensus       246 ~~~~~~~~~~~~~i~~~spdG~~l~v-~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          246 RDPETGKGLYRADVCALTFSGKYMFA-SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDE  322 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTT
T ss_pred             cccccccccccccEEEECCCCCEEEE-ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCC
Confidence            332      12   2 33  111221 2222 2    28999975  688665   2333444  688999999   899


Q ss_pred             EEEEcc--CCeEEEEeeCCceee
Q psy682          250 IVVNYE--RGHIAAFTMNGNRLR  270 (330)
Q Consensus       250 ~l~s~~--~~~~~~~s~nG~~la  270 (330)
                      .|+.++  ++.+.+|..++..|.
T Consensus       323 ~l~v~~~~~~~v~v~~~~~~~l~  345 (365)
T 1jof_A          323 WMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             EEEEECSSSCEEEEEEEETTEEE
T ss_pred             EEEEEEcCCCeEEEEEEchhhCc
Confidence            998874  578999999987654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.35  E-value=5.1e-12  Score=117.14  Aligned_cols=213  Identities=13%  Similarity=0.118  Sum_probs=125.1

Q ss_pred             ccCCCcEEEeecc--cccccc-eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            3 GGDKGIVEVWRTF--NLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         3 gs~d~~V~lW~~~--~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++.++.|.+|.++  +|++.. ....+......++|||||++                                      
T Consensus        12 ~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l--------------------------------------   53 (347)
T 3hfq_A           12 KKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCL--------------------------------------   53 (347)
T ss_dssp             SSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEE--------------------------------------
T ss_pred             CCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeE--------------------------------------
Confidence            4567788888875  344332 33455566667777777664                                      


Q ss_pred             cEEEEEc-CCcceEEEeCCCCCCcccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--CCCcc--c
Q psy682           80 SVVTVTA-NHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--DNFSQ--K  150 (330)
Q Consensus        80 ~~v~vS~-~~~~tv~lW~~~~~~~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~~~--~  150 (330)
                        +.++. +.+++|.+|+.+++.....   ..+.    ..+..++|+||++ +.+++. .+..+..+.+.  +.+..  .
T Consensus        54 --~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~----~~p~~~a~spdg~~l~~~~~-~~~~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           54 --YSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG----TPPAYVAVDEARQLVYSANY-HKGTAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             --EEEEEETTEEEEEEEEEETTEEEEEEEEEEES----CCCSEEEEETTTTEEEEEET-TTTEEEEEEECTTSCEEEEEE
T ss_pred             --EEEEecCCCceEEEEEecCCcEEEeeeeecCC----CCCEEEEECCCCCEEEEEeC-CCCEEEEEEeCCCCCeeecce
Confidence              12222 4577899999865543222   2333    3567899999998 554321 22223333332  11110  0


Q ss_pred             eee------------eeeEEEEecCCCeEEEeeccCCeEEEeeecc-ccccccc--ccCCCC-c---E-EEe--H-HHHH
Q psy682          151 LRV------------RHNCFVTTVDSRFLLACGFWDNSFREPFTTM-YLALQEG--KFDHPN-R---L-FSS--I-SLAW  207 (330)
Q Consensus       151 ~~~------------~~~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l~~~--l~gH~d-~---V-iaS--t-~~lW  207 (330)
                      +..            +..+++++|||+ ++++++.+++|++ |+++ +|++...  +..+.. .   + +..  . +.+ 
T Consensus       127 ~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~-~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v-  203 (347)
T 3hfq_A          127 VQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYV-YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFL-  203 (347)
T ss_dssp             EECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEE-EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEE-
T ss_pred             eecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEE-EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEE-
Confidence            100            134689999999 7888888999999 9997 5654321  111111 1   1 222  1 222 


Q ss_pred             hhhccCCCcEEEEccc---Cce--eeecCCCCC----CCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC
Q psy682          208 KNCQRDTSDVKVHTTF---GDL--LRSLDPPSG----FASPESVVMSREGVIV-VNY-ERGHIAAFTMN  265 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~~---G~l--l~tL~~h~~----~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n  265 (330)
                        ++..+++|.+|+.+   |++  +..+.....    ...+..++|||||+.| ++. .++.+..|.++
T Consensus       204 --~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          204 --AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             --EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             --EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence              56778999999754   554  333332221    0258899999999976 444 47889999876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.34  E-value=1.4e-11  Score=124.40  Aligned_cols=251  Identities=8%  Similarity=-0.107  Sum_probs=143.3

Q ss_pred             cCCCcEEEeecccccccceeecCCCcee---------EEEeC--CCCCc--C-------ccee-------------eee-
Q psy682            4 GDKGIVEVWRTFNLALLYAFPSCDSSVR---------SLALS--HDQKY--S-------PMMF-------------STV-   49 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~gH~~~V~---------svafS--pdg~~--~-------~l~~-------------~~~-   49 (330)
                      +.++..+||....+.....+..|...|.         +.+++  |||+.  .       -+..             ++. 
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~  123 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV  123 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC
Confidence            5688999999655666777888887776         66555  88875  0       0100             111 


Q ss_pred             ----cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCC------CCcccCC-CCCCCCCCCCCC
Q psy682           50 ----LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY------AASIQSP-SYAETPGSPPGN  118 (330)
Q Consensus        50 ----~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~------~~~~~~~-~h~~~~~~~~~~  118 (330)
                          +...+..+.|||||+.|+........- .      ..+...+|.+|+.++      +....+. .+.    ..+..
T Consensus       124 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~  192 (662)
T 3azo_A          124 SAVGGGLRWADPVLLPERGEVWCMAEEFTGE-G------PSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----RFVTG  192 (662)
T ss_dssp             CCSTTCEEEEEEEEETTTTEEEEEEEEECSS-S------TTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----SEECC
T ss_pred             ccCCCCccccCcEECCCCCEEEEEEecccCC-C------CCCceeEEEEEECCCCccccCCceeEEEecCC----CcccC
Confidence                233456677777777653332210000 0      002236799999988      6666655 443    34567


Q ss_pred             ccccCCCc-eeccCCCCC------CCcceeccCC-C---Cccceee----eeeEEEEecCCCeEEEeeccCCeEEE-eee
Q psy682          119 LPLTLDPI-LTHPTSNNN------APVPKRHLGD-N---FSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFRE-PFT  182 (330)
Q Consensus       119 l~fs~D~~-l~~~s~~~~------~~~~~~~l~~-~---~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl-~w~  182 (330)
                      +.|||||+ ++..+.+..      ..++.+.+.+ .   -...+..    ....++|+|||++ +.++..|++.+| -|+
T Consensus       193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l-~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL-IVATDRTGWWNLHRVD  271 (662)
T ss_dssp             CEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE-EEEECTTSSCEEEEEC
T ss_pred             ceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE-EEEECCCCCeEEEEEE
Confidence            89999999 554332321      2234444431 1   1112221    1246789999995 666667885555 155


Q ss_pred             cccccccccccCCCCc-----------E-EEe--HHHHHhhhccCCCcEEEE--cccCceeeecCCCCCCCCCcEE-EeC
Q psy682          183 TMYLALQEGKFDHPNR-----------L-FSS--ISLAWKNCQRDTSDVKVH--TTFGDLLRSLDPPSGFASPESV-VMS  245 (330)
Q Consensus       183 ~~~g~l~~~l~gH~d~-----------V-iaS--t~~lW~~SgS~Dgtvkl~--~~~G~ll~tL~~h~~~~~v~~v-~fS  245 (330)
                      +++|++.+...+|.+.           + +..  .+.+   +++. ++++||  +.+|..+++|..|.+  .+..+ +++
T Consensus       272 ~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~s~~  345 (662)
T 3azo_A          272 PATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV---VHGK-GAAVLGILDPESGELVDAAGPWT--EWAATLTVS  345 (662)
T ss_dssp             TTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE---EEBS-SSCEEEEEETTTTEEEECCSSCC--EEEEEEEEE
T ss_pred             CCCCceeecccccccccCccccccCceEeEeCCCEEEE---EEEc-CccEEEEEECCCCcEEEecCCCC--eEEEEEecC
Confidence            5567765555444332           1 111  2222   5677 999999  555666899998877  77777 555


Q ss_pred             CCccEEEEccCC---eEEEEeeCCceeeec
Q psy682          246 REGVIVVNYERG---HIAAFTMNGNRLRHE  272 (330)
Q Consensus       246 ~dG~~l~s~~~~---~~~~~s~nG~~las~  272 (330)
                      +++..+++++..   .+..+..++..+..+
T Consensus       346 ~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          346 GTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             TTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            555555555433   355555555555444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.32  E-value=3.6e-11  Score=109.52  Aligned_cols=218  Identities=15%  Similarity=0.063  Sum_probs=135.2

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      ++..++.|..|+..++  ...+..+...+.+++|+|||++                                        
T Consensus        45 ~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l----------------------------------------   82 (296)
T 3e5z_A           45 SDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHL----------------------------------------   82 (296)
T ss_dssp             EEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCE----------------------------------------
T ss_pred             EeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcE----------------------------------------
Confidence            3456678888888654  6667777777777777777766                                        


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCC--C--------------CCCCcceeccC
Q psy682           82 VTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTS--N--------------NNAPVPKRHLG  144 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~--~--------------~~~~~~~~~l~  144 (330)
                       .|+...+..|.+|+++.+...... .........++.+.+.+||.+....+  +              ....+++....
T Consensus        83 -~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           83 -IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             -EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             -EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence             244455567888888544433322 11111123456799999998443100  0              01123333321


Q ss_pred             CCCcccee---eeeeEEEEecCCCeEEEeeccCCeEEEeeecc-cccc---cccc---cCCCCcEEE-eHHHHHhhhccC
Q psy682          145 DNFSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM-YLAL---QEGK---FDHPNRLFS-SISLAWKNCQRD  213 (330)
Q Consensus       145 ~~~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~-~g~l---~~~l---~gH~d~Via-St~~lW~~SgS~  213 (330)
                      +.+. .+.   ...+.++++|||+.+ ++.+.++.|++ |+++ +|++   .+.+   .+..+.+.. +.=.+|- +.  
T Consensus       162 g~~~-~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~-~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~--  235 (296)
T 3e5z_A          162 GTLS-APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHR-YCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA--  235 (296)
T ss_dssp             SCEE-EEECCCSSEEEEEECTTSCEE-EEETTTTEEEE-EEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE--
T ss_pred             CCEE-EeecCCCCCccEEECCCCCEE-EEeCCCCeEEE-EEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec--
Confidence            1111 111   113578899999997 77778899999 9985 4555   2222   223333422 2223453 33  


Q ss_pred             CCcEEEEcccCceeeecCCCCCCCCCcEEEe-CCCccEEEEccCCeEEEEeeCCceeee
Q psy682          214 TSDVKVHTTFGDLLRSLDPPSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRLRH  271 (330)
Q Consensus       214 Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~f-S~dG~~l~s~~~~~~~~~s~nG~~las  271 (330)
                      ++.|.+|+.+|++++.+..|..   |.+++| +|||+.|..++.+.+..+.++.+.|..
T Consensus       236 ~~~v~~~~~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          236 GDGVHVLTPDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH  291 (296)
T ss_dssp             TTEEEEECTTSCEEEEEECSSC---CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred             CCeEEEECCCCCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence            7889999999999999987644   899999 699998888777777777776665543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.27  E-value=1.7e-10  Score=104.59  Aligned_cols=218  Identities=12%  Similarity=-0.029  Sum_probs=118.9

Q ss_pred             cccCCCcEEEeecccccccceeec-C----CCceeEEEeCCCCCcCcceeee-e----------cCccEEEEEeCCCCCe
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPS-C----DSSVRSLALSHDQKYSPMMFST-V----------LDDVCMSLKFPSNSPI   65 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~g-H----~~~V~svafSpdg~~~~l~~~~-~----------~~d~~~~v~Fs~~~~v   65 (330)
                      +++.++.|.+|++.+|+.+.++.. +    ...+.+++|+|||+.  +.+.. +          .+..+..+... .++.
T Consensus        51 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~  127 (337)
T 1pby_B           51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTRVALYDAE-TLSR  127 (337)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEETT-TTEE
T ss_pred             EeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE--EEEEecccccccccccccCceEEEEECC-CCcE
Confidence            456688999999999998877763 2    336889999999976  11110 0          12333333221 1222


Q ss_pred             eE-eee---ccceeccCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCC---
Q psy682           66 CH-VTA---NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP---  137 (330)
Q Consensus        66 ~~-~~~---~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~---  137 (330)
                      +. +..   ...+.+++++..++.+  +..|.+|+........ ...+.     ....+.|+||++.+..+......   
T Consensus       128 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          128 RKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS-----WEAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             EEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-----TTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             EEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-----cCCCceeCCCccEEeeeccCCCceee
Confidence            11 111   1113344444322333  3568999987655332 22221     12346889999833211111110   


Q ss_pred             --------------------cceeccCCCCccceee-----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc
Q psy682          138 --------------------VPKRHLGDNFSQKLRV-----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       138 --------------------~~~~~l~~~~~~~~~~-----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                                          +..+.+...-...+..     ...+++|+|||++++++   |+.|++ |++++++++..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~-~d~~~~~~~~~~  276 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLES-FDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEE-EETTTTEEEEEE
T ss_pred             eeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEE-EECCCCcCccee
Confidence                                1112211100000111     12357788888886665   688888 888765554322


Q ss_pred             cCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEee-CCceee
Q psy682          193 FDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM-NGNRLR  270 (330)
Q Consensus       193 ~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~-nG~~la  270 (330)
                                                            ..+ .  .+.+++|+|||+.|+.+ .++.+..|.. .|+.++
T Consensus       277 --------------------------------------~~~-~--~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          277 --------------------------------------PLP-H--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             --------------------------------------ECS-S--CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             --------------------------------------cCC-C--ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence                                                  111 1  67899999999977666 5788999986 466666


Q ss_pred             eccC
Q psy682          271 HESH  274 (330)
Q Consensus       271 s~~~  274 (330)
                      ....
T Consensus       316 ~~~~  319 (337)
T 1pby_B          316 QVDL  319 (337)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.26  E-value=5.4e-11  Score=108.15  Aligned_cols=228  Identities=15%  Similarity=0.110  Sum_probs=124.4

Q ss_pred             CCCcEEEeecc--ccc--ccceeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCC---eeEe-ee---cc
Q psy682            5 DKGIVEVWRTF--NLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSP---ICHV-TA---NT   72 (330)
Q Consensus         5 ~d~~V~lW~~~--~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~---v~~~-~~---~~   72 (330)
                      .++.|++|++.  +|+  .+..+..+. .+.+++|+|||+.   .+.... +..+..+... ++.   .+.. ..   ..
T Consensus        58 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~---l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~  132 (343)
T 1ri6_A           58 PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQF---VFVGSYNAGNVSVTRLE-DGLPVGVVDVVEGLDGCH  132 (343)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSE---EEEEETTTTEEEEEEEE-TTEEEEEEEEECCCTTBC
T ss_pred             CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCE---EEEEecCCCeEEEEECC-CCccccccccccCCCCce
Confidence            34999999997  554  445666655 8899999999986   122222 1223222222 211   1100 00   11


Q ss_pred             ceeccCCcE-EEEEcCCcceEEEeCCCC-CCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC
Q psy682           73 YVTLHMPSV-VTVTANHQFAINRWNPDY-AASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG  144 (330)
Q Consensus        73 ~~~~~~~~~-v~vS~~~~~tv~lW~~~~-~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~  144 (330)
                      .+.+.+++. +.++...++.|++|+.+. +.+.     ....+.   ...+..+.|+||++ +.+ +...+..+..+.+.
T Consensus       133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pdg~~l~~-~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNEQYAYC-VNELNSSVDVWELK  208 (343)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST---TCCEEEEEECTTSSEEEE-EETTTTEEEEEESS
T ss_pred             EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC---CCCcceEEECCCCCEEEE-EeCCCCEEEEEEec
Confidence            123444442 334444778899999875 3332     111111   13456799999998 433 22222333344431


Q ss_pred             ---CCCc--ccee---------eeeeEEEEecCCCeEEEeeccCCeEEEeeecc--c--ccccccccCCCCc--E-EEe-
Q psy682          145 ---DNFS--QKLR---------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTM--Y--LALQEGKFDHPNR--L-FSS-  202 (330)
Q Consensus       145 ---~~~~--~~~~---------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~--~--g~l~~~l~gH~d~--V-iaS-  202 (330)
                         +.+.  +.+.         .....++|+|||++|++++..|+.|++ |+++  +  .+.+..+..+...  + +.. 
T Consensus       209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d  287 (343)
T 1ri6_A          209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV-FSVSEDGSVLSKEGFQPTETQPRGFNVDHS  287 (343)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE-EEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred             CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE-EEEcCCCCceEEeeeecCCCccceEEECCC
Confidence               1110  0011         011258899999998888878999999 9997  2  3444444433331  2 222 


Q ss_pred             --HHHHHhhhccCCCcEEEEcc---cCce--eeecCCCCCCCCCcEEEeCCCc
Q psy682          203 --ISLAWKNCQRDTSDVKVHTT---FGDL--LRSLDPPSGFASPESVVMSREG  248 (330)
Q Consensus       203 --t~~lW~~SgS~Dgtvkl~~~---~G~l--l~tL~~h~~~~~v~~v~fS~dG  248 (330)
                        .+.+   ++..|++|.+|..   +|++  +.++... .  .+..|+|.|+-
T Consensus       288 g~~l~~---~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~--~p~~i~~~~~~  334 (343)
T 1ri6_A          288 GKYLIA---AGQKSHHISVYEIVGEQGLLHEKGRYAVG-Q--GPMWVVVNAHE  334 (343)
T ss_dssp             SSEEEE---ECTTTCEEEEEEEETTTTEEEEEEEEECS-S--SCCEEEEEEEC
T ss_pred             CCEEEE---ecCCCCeEEEEEEcCCCceeeEccccccC-C--CCeeEEEEccc
Confidence              2222   4557899999954   3644  4444432 2  57888888763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.25  E-value=7e-11  Score=106.70  Aligned_cols=169  Identities=11%  Similarity=0.024  Sum_probs=106.1

Q ss_pred             cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee-----eeeeEEEEecC
Q psy682           89 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR-----VRHNCFVTTVD  163 (330)
Q Consensus        89 ~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~spD  163 (330)
                      +..|.+|+.++..+.......   ...+..+.+.+|+.+..+.. .+..+..+...+.....+.     .....++++||
T Consensus        99 ~~~i~~~d~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A           99 THQIQIYNQYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             GCEEEEECTTSCEEEEECTTT---CSCEEEEEECTTSCEEEEET-TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred             CCEEEEECCCCcEEEEecCcc---CCCceEEEEeCCCCEEEEEC-CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC
Confidence            567888887665544332110   13456788999998444211 2222333332222111111     12357889999


Q ss_pred             CCeEEEeeccCCeEEEeeecccccccccccCC--CCcE--E-E-eHHHHHhhhccCCC-cEEEEcccCceeeecCCCCCC
Q psy682          164 SRFLLACGFWDNSFREPFTTMYLALQEGKFDH--PNRL--F-S-SISLAWKNCQRDTS-DVKVHTTFGDLLRSLDPPSGF  236 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH--~d~V--i-a-St~~lW~~SgS~Dg-tvkl~~~~G~ll~tL~~h~~~  236 (330)
                      |++ +++.+.++.|++ |+.+ |+.+..+..+  ....  + . +.=.+|- +.+.++ .|++|+.+|++++++..+...
T Consensus       175 g~l-~v~~~~~~~i~~-~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v-~~~~~~~~i~~~~~~g~~~~~~~~~~~~  250 (286)
T 1q7f_A          175 QEI-FISDNRAHCVKV-FNYE-GQYLRQIGGEGITNYPIGVGINSNGEILI-ADNHNNFNLTIFTQDGQLISALESKVKH  250 (286)
T ss_dssp             SEE-EEEEGGGTEEEE-EETT-CCEEEEESCTTTSCSEEEEEECTTCCEEE-EECSSSCEEEEECTTSCEEEEEEESSCC
T ss_pred             CCE-EEEECCCCEEEE-EcCC-CCEEEEEccCCccCCCcEEEECCCCCEEE-EeCCCCEEEEEECCCCCEEEEEcccCCC
Confidence            985 677777999999 9984 7665555433  2222  2 2 2212333 566675 999999999999998876542


Q ss_pred             CCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682          237 ASPESVVMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                      ..+..|+|+|||+++++..++++..|..+
T Consensus       251 ~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          251 AQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             SCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             CcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            35789999999999998667889888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.25  E-value=5e-11  Score=109.00  Aligned_cols=214  Identities=11%  Similarity=0.037  Sum_probs=124.9

Q ss_pred             ccCCCcEEEeecccccc-cceeecCCCceeEEEeCCCCCc------C----cceeee----------ecCccEEEEEeCC
Q psy682            3 GGDKGIVEVWRTFNLAL-LYAFPSCDSSVRSLALSHDQKY------S----PMMFST----------VLDDVCMSLKFPS   61 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~-l~tl~gH~~~V~svafSpdg~~------~----~l~~~~----------~~~d~~~~v~Fs~   61 (330)
                      +..++.|.+|++.+++. ...+..+.....+++|||||+.      .    .+....          ........+.|+|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp  137 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP  137 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC
Confidence            34578999999999988 8888888888777999999996      1    111111          0111224455555


Q ss_pred             CCCeeEeeeccceeccCCcEEEEEcCCcce-EEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCCCCCCc
Q psy682           62 NSPICHVTANTYVTLHMPSVVTVTANHQFA-INRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPV  138 (330)
Q Consensus        62 ~~~v~~~~~~~~~~~~~~~~v~vS~~~~~t-v~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~  138 (330)
                      ||+.+                .++...+.. |.+|+.+........ ...-.....+..+.|+||++ +.+ +...+..+
T Consensus       138 dg~~l----------------~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v-~~~~~~~v  200 (331)
T 3u4y_A          138 NGNGL----------------ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV-ANLIGNSI  200 (331)
T ss_dssp             TSSCE----------------EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE-EETTTTEE
T ss_pred             CCCEE----------------EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE-EeCCCCeE
Confidence            55543                344444455 899987643221000 00000112456899999998 433 22223334


Q ss_pred             ceeccC-CCC---ccceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccc--cccccCC----CCc------E-
Q psy682          139 PKRHLG-DNF---SQKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL--QEGKFDH----PNR------L-  199 (330)
Q Consensus       139 ~~~~l~-~~~---~~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l--~~~l~gH----~d~------V-  199 (330)
                      ..+.+. +..   ...+...  ...++|+|||++++++...+++|.+ |+.++|++  ++.+..+    ...      + 
T Consensus       201 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T 3u4y_A          201 GILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFN-FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMA  279 (331)
T ss_dssp             EEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEE-EETTTTEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred             EEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEE-EECCCCceeeecccccccccCCCCcccccceE
Confidence            444432 111   1122221  2478899999988888777899999 99988887  3332222    111      1 


Q ss_pred             EEe-HHHHHhhhccCCCcEEEEcccCceeeecCCCCC
Q psy682          200 FSS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG  235 (330)
Q Consensus       200 iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~  235 (330)
                      +.. --.+|- +++.+++|++|+..++.+..+.+.+.
T Consensus       280 ~spdg~~l~v-~~~~~~~v~v~d~~~~~~~~~~~~~~  315 (331)
T 3u4y_A          280 LNKTETKLFI-SANISRELKVFTISGKVVGYVAGIEA  315 (331)
T ss_dssp             ECTTSSEEEE-EETTTTEEEEEETTSCEEEECTTCCC
T ss_pred             ECCCCCEEEE-ecCCCCcEEEEEecCCcccceecccc
Confidence            222 011111 66778899999998888777666544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.24  E-value=5.1e-11  Score=110.17  Aligned_cols=225  Identities=8%  Similarity=0.013  Sum_probs=137.2

Q ss_pred             CcccCCCcEEEeecccccccceeecCC-CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCD-SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~-~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      ++++.|+.|.+||.++|+.+.+++.|. ..+.+++++|||++    +..                               
T Consensus         9 v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i----lvs-------------------------------   53 (276)
T 3no2_A            9 VGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI----LFS-------------------------------   53 (276)
T ss_dssp             EECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE----EEE-------------------------------
T ss_pred             EeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE----EEe-------------------------------
Confidence            467899999999999999999999887 58899999999887    211                               


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCC--------CCcceec--cCCCCcc
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--------APVPKRH--LGDNFSQ  149 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~--------~~~~~~~--l~~~~~~  149 (330)
                              .+..|..|++++..+.+...+.   .....++.+.+||.+..+..+.+        .+...|+  +......
T Consensus        54 --------~~~~V~~~d~~G~~~W~~~~~~---~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           54 --------YSKGAKMITRDGRELWNIAAPA---GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIER  122 (276)
T ss_dssp             --------CBSEEEEECTTSCEEEEEECCT---TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSS
T ss_pred             --------CCCCEEEECCCCCEEEEEcCCC---CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCc
Confidence                    1222444444333332222110   01223456666666433222101        1111111  1110000


Q ss_pred             ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--E-EEe--HHHHHhhhccCCCcEEEEccc-
Q psy682          150 KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--L-FSS--ISLAWKNCQRDTSDVKVHTTF-  223 (330)
Q Consensus       150 ~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--V-iaS--t~~lW~~SgS~Dgtvkl~~~~-  223 (330)
                       -......+++.+||+++ ++.+.++.|.+ |+.+ |+++-.+..+...  + +..  .+.+   +++.++.|..++.+ 
T Consensus       123 -~~~~~~~v~~~~~G~~l-v~~~~~~~v~~-~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v---~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          123 -PHAQFRQINKNKKGNYL-VPLFATSEVRE-IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLV---ACGDAHCFVQLNLES  195 (276)
T ss_dssp             -GGGSCSCCEECTTSCEE-EEETTTTEEEE-ECTT-SCEEEEEECSSCCCEEEECTTSCEEE---ECBTTSEEEEECTTT
T ss_pred             -ccccccCceECCCCCEE-EEecCCCEEEE-ECCC-CCEEEEEECCCCccceeEcCCCCEEE---EeCCCCeEEEEeCcC
Confidence             00012345689999985 55668999999 9997 9887666543221  1 111  2222   56667788889886 


Q ss_pred             CceeeecCCCCC----CCCCcEEEeCCCccEEEEcc-----------CCeEEEEeeCCceeeeccCcccc
Q psy682          224 GDLLRSLDPPSG----FASPESVVMSREGVIVVNYE-----------RGHIAAFTMNGNRLRHESHNDNL  278 (330)
Q Consensus       224 G~ll~tL~~h~~----~~~v~~v~fS~dG~~l~s~~-----------~~~~~~~s~nG~~las~~~~~dV  278 (330)
                      |+++.++..+..    ...|..++..++|.++|+..           ...+.-++++|+.+-+.....++
T Consensus       196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~  265 (276)
T 3no2_A          196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF  265 (276)
T ss_dssp             CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred             CcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence            999999864321    01378999999999999873           33588888999998887766544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.23  E-value=3.8e-10  Score=103.84  Aligned_cols=225  Identities=7%  Similarity=-0.077  Sum_probs=135.7

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee----------------------ecCccEEEEEeC
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST----------------------VLDDVCMSLKFP   60 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~----------------------~~~d~~~~v~Fs   60 (330)
                      .+.+++++.|   .++.+..+.++...+.+++|+|||++    +..                      .+...+..+.|+
T Consensus        23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           23 IISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQL----FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH   95 (333)
T ss_dssp             CCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCE----EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred             EeecccCccc---ccceeEEEeccCccccCcEECCCCCE----EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence            4567899999   56778889999999999999999987    221                      122334444444


Q ss_pred             CCCCeeEeeeccceeccCCcEEEEEcCCc----ceEEEeCCCCCCcccC-CCCCCCCCCCCCCccccCCCceeccCCCC-
Q psy682           61 SNSPICHVTANTYVTLHMPSVVTVTANHQ----FAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNN-  134 (330)
Q Consensus        61 ~~~~v~~~~~~~~~~~~~~~~v~vS~~~~----~tv~lW~~~~~~~~~~-~~h~~~~~~~~~~l~fs~D~~l~~~s~~~-  134 (330)
                      |++.+                 .++...+    ..|.+|+.++...... ....  ....+..+.+++|+.+..++... 
T Consensus        96 ~dg~l-----------------~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           96 KDGRL-----------------FVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             TTSCE-----------------EEEECTTSSSCCEEEEECTTSCSCEEEECSSS--SCCCEEEEEECTTSCEEEEECCCB
T ss_pred             CCCcE-----------------EEEeCCCCCCCceEEEEeCCCCEEEEEEccCc--cCCcccceEECCCCCEEEEecccc
Confidence            44443                 3444444    6799999987765422 1111  12346678999999955432211 


Q ss_pred             ----CCCcceeccCC-CCccceee---eeeEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccc--------cccCCC-
Q psy682          135 ----NAPVPKRHLGD-NFSQKLRV---RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQE--------GKFDHP-  196 (330)
Q Consensus       135 ----~~~~~~~~l~~-~~~~~~~~---~~~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~--------~l~gH~-  196 (330)
                          ...+++..... .+ ..+..   ..+.++++|||++|+++.+.++.|.+ |+.++ |+...        .+.++. 
T Consensus       157 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~-~d~~~~g~~~~~~~~~~~~~~~~~~~  234 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHR-IALEDDGVTIQPFGATIPYYFTGHEG  234 (333)
T ss_dssp             TTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE-EEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             ccCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeCCCCeEEE-EEecCCCcCcccccceEEEecCCCCC
Confidence                12233333211 11 11111   23578899999987887777899999 99853 43321        112221 


Q ss_pred             -CcEEE-eHHHHHhhhccCCCcEEEEcccCceeeecCCCCC----CCCCcEEEeCCCccEE-EEccC
Q psy682          197 -NRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG----FASPESVVMSREGVIV-VNYER  256 (330)
Q Consensus       197 -d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~----~~~v~~v~fS~dG~~l-~s~~~  256 (330)
                       +.+.. ..=.+|- +...++.|.+|+.+|+.++++..+..    ...+.+++|+|||+.| ++..+
T Consensus       235 ~~~i~~d~~G~l~v-~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          235 PDSCCIDSDDNLYV-AMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEEEBTTCCEEE-EEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCceEECCCCCEEE-EEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence             11212 2223443 55567899999999999988865432    0158999999998655 44443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.15  E-value=8.3e-10  Score=101.13  Aligned_cols=205  Identities=9%  Similarity=0.024  Sum_probs=127.8

Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-ee
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT  128 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~  128 (330)
                      .......+.|+|+++.+|++.....          ..+.+++|.+|+.+...........    ..+..+.|++|++ +.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~----------~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~  104 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSR----------KLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLW  104 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCT----------TTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCc----------CCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEE
Confidence            3456778899999988744321000          0013778999999766544333222    2467899999998 44


Q ss_pred             ccCCCCCCCcceeccCC-CCccceee------------eeeEEEEecCCCeEEEee-ccCCeEEEeeecccccccccccC
Q psy682          129 HPTSNNNAPVPKRHLGD-NFSQKLRV------------RHNCFVTTVDSRFLLACG-FWDNSFREPFTTMYLALQEGKFD  194 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~-~~~~~~~~------------~~~~~~~spDg~~i~asg-~~D~tirl~w~~~~g~l~~~l~g  194 (330)
                      ++ ...+..+..+.+.. .....+..            +..+++++|||+++++++ +.++.|.+ |+.++++.+..+..
T Consensus       105 v~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~-~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          105 FG-NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV-VDGGNIKLKTAIQN  182 (353)
T ss_dssp             EE-ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE-EETTTTEEEEEECC
T ss_pred             EE-ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE-EcCCCCceEEEecC
Confidence            32 22223333333311 11112222            235688999999888877 45888999 99998988877763


Q ss_pred             CCCcE----EEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCC----CCCCCCCcEEEeCCCccEEEEc--cCCeEEEE
Q psy682          195 HPNRL----FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP----PSGFASPESVVMSREGVIVVNY--ERGHIAAF  262 (330)
Q Consensus       195 H~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~----h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~  262 (330)
                      +...+    +.. --.++  .++.|+.|.+|+. +|+.++++..    +..  .+..++|+|||+.|+.+  +++.+..|
T Consensus       183 ~~~~~~~~~~s~dg~~l~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLY--TTNADGELITIDTADNKILSRKKLLDDGKEH--FFINISLDTARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             CCTTCCCCEEETTTTEEE--EECTTSEEEEEETTTTEEEEEEECCCSSSCC--CEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred             CCCccceEEECCCCCEEE--EEcCCCeEEEEECCCCeEEEEEEcCCCCCCc--ccceEEECCCCCEEEEEeCCCCEEEEE
Confidence            33322    332 11111  4566899999975 7888888764    333  67889999999966555  35788888


Q ss_pred             ee-CCceeeeccC
Q psy682          263 TM-NGNRLRHESH  274 (330)
Q Consensus       263 s~-nG~~las~~~  274 (330)
                      .+ +|+.+.....
T Consensus       259 d~~~~~~~~~~~~  271 (353)
T 3vgz_A          259 DTRNGNILAKVAA  271 (353)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEEc
Confidence            76 5666655543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.08  E-value=2.2e-09  Score=98.92  Aligned_cols=235  Identities=9%  Similarity=-0.026  Sum_probs=130.0

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------C--c---cee----------eeecCccEEEEEeCCC
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S--P---MMF----------STVLDDVCMSLKFPSN   62 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~--~---l~~----------~~~~~d~~~~v~Fs~~   62 (330)
                      .++.|.+|++.+|+. ..+    ..+.+++|||||+.       .  .   +..          ...... +..+.|+||
T Consensus        41 ~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd  114 (347)
T 2gop_A           41 YENTIVIENLKNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEEETTTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred             ccceEEEEeCCCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence            367899999987764 344    57889999999986       1  0   111          111122 677889999


Q ss_pred             CCeeEeeeccce-----------eccCCcEEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCceecc
Q psy682           63 SPICHVTANTYV-----------TLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHP  130 (330)
Q Consensus        63 ~~v~~~~~~~~~-----------~~~~~~~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~l~~~  130 (330)
                      |+.|++.+....           .+..++.- ........|.+|+.+++.. ..+.. .     .+..+.++||+ ++..
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~~~~l~~-~-----~~~~~~~spdg-~~~~  186 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLG-FFDGEKTTFWIFDTESEEVIEEFEK-P-----RFSSGIWHRDK-IVVN  186 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC----------CEEEEEEEETTTTEEEEEEEE-E-----TTCEEEEETTE-EEEE
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcc-cccCccceEEEEECCCCeEEeeecC-C-----CcccccCCCCe-EEEE
Confidence            987766643200           00000000 0001245688898877655 44322 1     35678999999 5542


Q ss_pred             CCCC--------CCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccC-------CeEEEeeecccccccccccCC
Q psy682          131 TSNN--------NAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWD-------NSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       131 s~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D-------~tirl~w~~~~g~l~~~l~gH  195 (330)
                      +...        ...++... .+.. +.+........++|||++|+..+..+       ..|.+ |+  +|+......+|
T Consensus       187 ~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~-~d--~~~~~~l~~~~  261 (347)
T 2gop_A          187 VPHREIIPQYFKFWDIYIWE-DGKE-EKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYI-YD--GKEVMGILDEV  261 (347)
T ss_dssp             EECCCSSCCSSCCEEEEEEE-TTEE-EEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEE-EC--SSCEEESSTTC
T ss_pred             EecccccccccccccEEEeC-CCce-EEeccCcceeeECCCCCEEEEEEccccCCccccceEEE-EC--CCceEeccccC
Confidence            2211        11222332 2211 11211122334599999976665432       24555 66  57666555566


Q ss_pred             CCcEEE----e-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeE-EEEeeCCc
Q psy682          196 PNRLFS----S-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHI-AAFTMNGN  267 (330)
Q Consensus       196 ~d~Via----S-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~-~~~s~nG~  267 (330)
                      ...+-.    + -+.+   +++.|++++|| . +|++.+. .++.+  .|.+++|+|  .+++++ +.+.. .+|..||+
T Consensus       262 ~~~~~~~~~~sdg~~~---~~~~~~~~~l~-~~~g~~~~~-~~~~~--~v~~~~~s~--~~~~~~~~~~~~~~l~~~~g~  332 (347)
T 2gop_A          262 DRGVGQAKIKDGKVYF---TLFEEGSVNLY-IWDGEIKPI-AKGRH--WIMGFDVDE--IVVYLKETATRLRELFTWDGE  332 (347)
T ss_dssp             CSEEEEEEEETTEEEE---EEEETTEEEEE-EESSSEEEE-ECSSS--EEEEEEESS--SEEEEEECSSSCCEEEEESSS
T ss_pred             CcccCCccEEcCcEEE---EEecCCcEEEE-EcCCceEEE-ecCCC--eEEeeeeeC--cEEEEEcCCCChHHheEeCCc
Confidence            554421    1 1111   67889999999 6 4776444 44455  799999999  566555 44433 56665543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.06  E-value=1.5e-09  Score=97.84  Aligned_cols=187  Identities=12%  Similarity=0.076  Sum_probs=113.9

Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCC--CCCCCCCCCccc-cCCCceeccCCCCCCCcceeccCCCCcccee----eeee
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYA--ETPGSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDNFSQKLR----VRHN  156 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~--~~~~~~~~~l~f-s~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~  156 (330)
                      ++...+..|.+|++++..........  ......+..+.+ .+|+.+.++..+.+..+..+...+.....+.    ....
T Consensus        45 v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~  124 (286)
T 1q7f_A           45 VADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR  124 (286)
T ss_dssp             EEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE
T ss_pred             EEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce
Confidence            45555677888888755443332110  000123456777 5788754422211222333322111111111    1235


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE--E--EeHHHHHhhhccCCCcEEEEcccCceeeec
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL--F--SSISLAWKNCQRDTSDVKVHTTFGDLLRSL  230 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V--i--aSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL  230 (330)
                      .++++|||++ +++...++.|++ |+.+ |+.+..+.  ++...+  +  ...=.+|- +.+.++.|++|+.+|+.++++
T Consensus       125 ~i~~~~~g~l-~v~~~~~~~i~~-~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~~~~~~  200 (286)
T 1q7f_A          125 GVTVDNKGRI-IVVECKVMRVII-FDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQYLRQI  200 (286)
T ss_dssp             EEEECTTSCE-EEEETTTTEEEE-ECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCCEEEEE
T ss_pred             EEEEeCCCCE-EEEECCCCEEEE-EcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE-EECCCCEEEEEcCCCCEEEEE
Confidence            7889999986 666667899999 9974 76655442  232222  2  22112332 666789999999999999998


Q ss_pred             CCCCCCCCCcEEEeCCCccEEEEcc-CC-eEEEEeeCCceeeeccC
Q psy682          231 DPPSGFASPESVVMSREGVIVVNYE-RG-HIAAFTMNGNRLRHESH  274 (330)
Q Consensus       231 ~~h~~~~~v~~v~fS~dG~~l~s~~-~~-~~~~~s~nG~~las~~~  274 (330)
                      ..+.....+..|+|+|||+++|+.. .+ .+..|.++|+.+.....
T Consensus       201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~  246 (286)
T 1q7f_A          201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES  246 (286)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE
T ss_pred             ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcc
Confidence            7653212789999999999999884 44 89999999998877754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.05  E-value=7.6e-10  Score=113.01  Aligned_cols=210  Identities=9%  Similarity=-0.056  Sum_probs=120.2

Q ss_pred             CCCcEEEeeccccccc--ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            5 DKGIVEVWRTFNLALL--YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l--~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      .|++|++|++.+|+.+  ..+.   ..+.+++|||||+.                                       ++
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~---------------------------------------la  125 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSK---------------------------------------LA  125 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTC---------------------------------------EE
T ss_pred             cceEEEEEECCCCccccceecC---cccccceECCCCCE---------------------------------------EE
Confidence            3789999999888763  3332   46888888888887                                       22


Q ss_pred             EEEcCCcceEEEeCCCCCCcccCC--CCCCCCC-------------CCCCCccccCCCc-eeccCCCCCC----------
Q psy682           83 TVTANHQFAINRWNPDYAASIQSP--SYAETPG-------------SPPGNLPLTLDPI-LTHPTSNNNA----------  136 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~~~~--~h~~~~~-------------~~~~~l~fs~D~~-l~~~s~~~~~----------  136 (330)
                      .++   +.+|++|+.+++...++.  ++...+.             ....++.|||||+ ++.++.+...          
T Consensus       126 ~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~  202 (719)
T 1z68_A          126 YVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG  202 (719)
T ss_dssp             EEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred             EEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence            232   457999999776654432  3321110             1225799999999 6554332111          


Q ss_pred             ----------------------CcceeccCCCCc---------cce---eeeeeEEEEecCCCeEEEeec-cCC--eEEE
Q psy682          137 ----------------------PVPKRHLGDNFS---------QKL---RVRHNCFVTTVDSRFLLACGF-WDN--SFRE  179 (330)
Q Consensus       137 ----------------------~~~~~~l~~~~~---------~~~---~~~~~~~~~spDg~~i~asg~-~D~--tirl  179 (330)
                                            .++.+.+...-.         ..+   ......+++|||++++++... .++  .|.+
T Consensus       203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~  282 (719)
T 1z68_A          203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI  282 (719)
T ss_dssp             SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred             CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence                                  112222211100         001   112357889999876444221 222  3677


Q ss_pred             eee----cccccccccc----cCCCCcE---------EEe--H-HHHHhhhccCCCcEEE--EcccCceeeecCCCCCCC
Q psy682          180 PFT----TMYLALQEGK----FDHPNRL---------FSS--I-SLAWKNCQRDTSDVKV--HTTFGDLLRSLDPPSGFA  237 (330)
Q Consensus       180 ~w~----~~~g~l~~~l----~gH~d~V---------iaS--t-~~lW~~SgS~Dgtvkl--~~~~G~ll~tL~~h~~~~  237 (330)
                       |+    .++|+....+    .+|...|         ++.  . +.++  +...||...|  |+..|...+.|.++..  
T Consensus       283 -~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~--~~~~~g~~~l~~~~~~~~~~~~lt~~~~--  357 (719)
T 1z68_A          283 -CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI--FSDKDGYKHIHYIKDTVENAIQITSGKW--  357 (719)
T ss_dssp             -EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE--EECTTSCEEEEEESSCSTTCEECSCSSS--
T ss_pred             -EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE--EEccCCceEEEEEECCCCceEecccCce--
Confidence             88    7788877766    3565432         222  1 1111  3445665555  5666655788887766  


Q ss_pred             CCcEEEeCCCccEEEEc-cC-----CeEEEEeeC
Q psy682          238 SPESVVMSREGVIVVNY-ER-----GHIAAFTMN  265 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~~-----~~~~~~s~n  265 (330)
                      .|..+.++ ||+.|+.. .+     +..++|.++
T Consensus       358 ~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          358 EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            68888888 77766554 33     556666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.04  E-value=2.2e-09  Score=101.22  Aligned_cols=220  Identities=7%  Similarity=0.024  Sum_probs=123.5

Q ss_pred             CceeEEEeCCC-CCcCcceeee-ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCC-CCCccc
Q psy682           28 SSVRSLALSHD-QKYSPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPD-YAASIQ  104 (330)
Q Consensus        28 ~~V~svafSpd-g~~~~l~~~~-~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~-~~~~~~  104 (330)
                      ..|..+.|.++ |++..+.... .....+..+.|+||++.+|+               +  +.+ +|.+|+.+ .+.+..
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~---------------~--~~~-~v~~~~~~~~g~~~~   75 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG---------------A--AMK-KWSSFAVKSPTEIVH   75 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE---------------E--EBT-EEEEEEEEETTEEEE
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE---------------E--ccc-eEEEEEECCCCCEEE
Confidence            46888888764 4443222211 23346778999999997632               2  233 78999875 333332


Q ss_pred             CCCCCCCCCCCCCCccccCCCc--ee-ccC------CC-----CCCCcceeccC--CCCcccee-------eeeeEEEEe
Q psy682          105 SPSYAETPGSPPGNLPLTLDPI--LT-HPT------SN-----NNAPVPKRHLG--DNFSQKLR-------VRHNCFVTT  161 (330)
Q Consensus       105 ~~~h~~~~~~~~~~l~fs~D~~--l~-~~s------~~-----~~~~~~~~~l~--~~~~~~~~-------~~~~~~~~s  161 (330)
                      ...+..  ...+.++.|+||++  ++ ++.      .+     .+.....+.+.  +.+.+.+.       .+..+++|+
T Consensus        76 ~~~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           76 EASHPI--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             EEEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             eeEeec--CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC
Confidence            222210  01245799999999  33 221      01     11222333332  22222222       134578899


Q ss_pred             cCCCeEEEeeccCCeEEEeeecc-ccccc--cccc--CCCCcE----EEe-HHHHHhhhccCCCcEEEEcc---cCcee-
Q psy682          162 VDSRFLLACGFWDNSFREPFTTM-YLALQ--EGKF--DHPNRL----FSS-ISLAWKNCQRDTSDVKVHTT---FGDLL-  227 (330)
Q Consensus       162 pDg~~i~asg~~D~tirl~w~~~-~g~l~--~~l~--gH~d~V----iaS-t~~lW~~SgS~Dgtvkl~~~---~G~ll-  227 (330)
                      |||++|+++...+++|++ |+++ +|++.  ..+.  .|...+    +.. --.++- +...+++|.+|..   +|++. 
T Consensus       154 pdG~~l~~~~~~~~~v~~-~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v-~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          154 PTETYLYSADLTANKLWT-HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA-LMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             TTSSEEEEEETTTTEEEE-EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE-EETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCEEEEEcCCCCEEEE-EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE-EECCCCeEEEEEEeCCCCcEEE
Confidence            999998887766789999 9998 67753  2232  122322    222 101111 3445789999854   57763 


Q ss_pred             -----eecCCC-CCCC-------CCcEEE-eCCCccEEEEcc--CC-----eEEEEee--CCcee
Q psy682          228 -----RSLDPP-SGFA-------SPESVV-MSREGVIVVNYE--RG-----HIAAFTM--NGNRL  269 (330)
Q Consensus       228 -----~tL~~h-~~~~-------~v~~v~-fS~dG~~l~s~~--~~-----~~~~~s~--nG~~l  269 (330)
                           .++..+ .+..       .+..++ |||||+.|+.++  .+     ++..|.+  +|++.
T Consensus       232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence                 233221 1101       378999 999999887653  33     8999987  46643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.02  E-value=5.7e-09  Score=97.20  Aligned_cols=211  Identities=12%  Similarity=0.112  Sum_probs=119.4

Q ss_pred             cCCCceeEEEeCCC-CCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC--CcceEEEeCCCCC-
Q psy682           25 SCDSSVRSLALSHD-QKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN--HQFAINRWNPDYA-  100 (330)
Q Consensus        25 gH~~~V~svafSpd-g~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~--~~~tv~lW~~~~~-  100 (330)
                      +....|+-..|.++ |++..+...  +......++|+||++.+|+.               +.+  ..++|.+|+.+.. 
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~---------------~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSV---------------NEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEE---------------ECCSSTTCEEEEEEEETTT
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEE---------------EccCCCCCcEEEEEEeCCC
Confidence            34567777788764 444333222  55566778999999986333               332  4578899987642 


Q ss_pred             -CcccC---CCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC--CCCccc----------------eeeeeeE
Q psy682          101 -ASIQS---PSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG--DNFSQK----------------LRVRHNC  157 (330)
Q Consensus       101 -~~~~~---~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~--~~~~~~----------------~~~~~~~  157 (330)
                       .+...   ..+.    ..+..+++  |++ +.++.. .+..+..+.+.  +.+.+.                ...+..+
T Consensus        87 g~~~~~~~~~~~~----~~p~~~~~--dg~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~  159 (361)
T 3scy_A           87 GTLHLLNTQKTMG----ADPCYLTT--NGKNIVTANY-SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC  159 (361)
T ss_dssp             TEEEEEEEEECSS----SCEEEEEE--CSSEEEEEET-TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred             CcEEEeeEeccCC----CCcEEEEE--CCCEEEEEEC-CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence             22221   1222    23345666  777 443221 22223333321  111100                0112256


Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeeccccc-------ccc------cccCCCCcE----EEe---HHHHHhhhccCCCcE
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLA-------LQE------GKFDHPNRL----FSS---ISLAWKNCQRDTSDV  217 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~-------l~~------~l~gH~d~V----iaS---t~~lW~~SgS~Dgtv  217 (330)
                      ++|+|||++|++++..+++|++ |+++...       +..      ....+....    +..   .+.+   +...+++|
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v---~~~~~~~v  235 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHK-FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL---INEIGGTV  235 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEE-EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE---EETTTCEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEE-EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE---EcCCCCeE
Confidence            8899999998998888999999 9876432       211      111122211    222   1211   45578999


Q ss_pred             EEEcc-cCce--eeec---CCCCCCCCCcEEEeCCCccEEEEc--c-CCeEEEEeeC
Q psy682          218 KVHTT-FGDL--LRSL---DPPSGFASPESVVMSREGVIVVNY--E-RGHIAAFTMN  265 (330)
Q Consensus       218 kl~~~-~G~l--l~tL---~~h~~~~~v~~v~fS~dG~~l~s~--~-~~~~~~~s~n  265 (330)
                      .+|+. +|++  +.++   ..+..  .+..++|||||+.|+.+  + .+.+.+|.++
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~--~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQ--GSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCC--CEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEEEecCCceEEeEEEecCCCCCC--CcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            99976 5654  3333   22323  57899999999987554  3 4789999885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.99  E-value=1.6e-09  Score=111.40  Aligned_cols=228  Identities=9%  Similarity=-0.099  Sum_probs=127.4

Q ss_pred             cccCCCcEEEeecccccccceeecCCCce--eEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSV--RSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V--~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +|+++.+|++|++.+|+.+.  ..+-..+  .+++|||||+.                        ++.++.....-...
T Consensus       142 ~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~------------------------l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          142 NAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG------------------------FYYEWLPTDPSIKV  195 (695)
T ss_dssp             TTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE------------------------EEEEECCCCTTSCG
T ss_pred             CCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE------------------------EEEEEecCCCCCcc
Confidence            46677899999999988651  1222333  57888888776                        11111000000000


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC--CCCcceeccCCCCccce
Q psy682           80 SVVTVTANHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN--NAPVPKRHLGDNFSQKL  151 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~--~~~~~~~~l~~~~~~~~  151 (330)
                          ........|++|+..++...     ...+|.    .....+.+||||+ ++..+.+.  ...++.+.....-.+.+
T Consensus       196 ----~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          196 ----DERPGYTTIRYHTLGTEPSKDTVVHERTGDP----TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             ----GGGGGGCEEEEEETTSCGGGCEEEECCCCCT----TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred             ----ccCCCCCEEEEEECCCCchhceEEEecCCCC----EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence                00122344899998655421     111221    2345789999999 44333222  22333333211111222


Q ss_pred             eeee---eEEEEecCCCeEEEeeccC---CeEEEeeecccccc--cccccCCC-CcEEE----e--HHHHHhhhccCCCc
Q psy682          152 RVRH---NCFVTTVDSRFLLACGFWD---NSFREPFTTMYLAL--QEGKFDHP-NRLFS----S--ISLAWKNCQRDTSD  216 (330)
Q Consensus       152 ~~~~---~~~~~spDg~~i~asg~~D---~tirl~w~~~~g~l--~~~l~gH~-d~Via----S--t~~lW~~SgS~Dgt  216 (330)
                      ..+.   .... .+||+ ++..+.++   ..|.+ |++++++.  .+.+..|. +..+.    +  .+.+   +.+.|++
T Consensus       268 ~~~~~~~~~~~-~~~g~-l~~~s~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~---~~~~dg~  341 (695)
T 2bkl_A          268 VKGVGAKYEVH-AWKDR-FYVLTDEGAPRQRVFE-VDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL---EYLKDAT  341 (695)
T ss_dssp             EECSSCCEEEE-EETTE-EEEEECTTCTTCEEEE-EBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE---EEEETTE
T ss_pred             ecCCCceEEEE-ecCCc-EEEEECCCCCCCEEEE-EeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE---EEEECCE
Confidence            2221   2333 47888 66666544   67888 99877653  24455543 44321    1  2333   7889999


Q ss_pred             EEEEcc--cCceeeecCCC-CCCCCCcEEEeCCCccEEEEc-c----CCeEEEEeeCCceeee
Q psy682          217 VKVHTT--FGDLLRSLDPP-SGFASPESVVMSREGVIVVNY-E----RGHIAAFTMNGNRLRH  271 (330)
Q Consensus       217 vkl~~~--~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~s~-~----~~~~~~~s~nG~~las  271 (330)
                      .+||..  +|+.+++|..| .+  .|..+++||||+.++.. +    .+++..|.+++..+..
T Consensus       342 ~~l~~~~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~  402 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSEL  402 (695)
T ss_dssp             EEEEEEETTCCEEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             EEEEEEeCCCCeeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence            999854  69888888876 44  78889999999877632 2    4578888876644433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.97  E-value=3.5e-09  Score=106.87  Aligned_cols=175  Identities=9%  Similarity=-0.082  Sum_probs=102.0

Q ss_pred             CCcceEEEeC-CCCCCcccCCCCCCCCCCCC-----CCccc--cCCCce-eccCCCCCCCcceeccC----CCCccceee
Q psy682           87 NHQFAINRWN-PDYAASIQSPSYAETPGSPP-----GNLPL--TLDPIL-THPTSNNNAPVPKRHLG----DNFSQKLRV  153 (330)
Q Consensus        87 ~~~~tv~lW~-~~~~~~~~~~~h~~~~~~~~-----~~l~f--s~D~~l-~~~s~~~~~~~~~~~l~----~~~~~~~~~  153 (330)
                      +.++..++|. ..++..+++.+|...+...+     ..+.+  |||++. ++.+++.+..++...+.    +. .+.+..
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~  122 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTP  122 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSC
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccC
Confidence            5566778887 34555556655543222111     03334  499986 54445445556666654    22 122222


Q ss_pred             --------eeeEEEEecCCCeEEEeeccC----------CeEEEeeeccc------cccccccc-CCCCcE----EEe--
Q psy682          154 --------RHNCFVTTVDSRFLLACGFWD----------NSFREPFTTMY------LALQEGKF-DHPNRL----FSS--  202 (330)
Q Consensus       154 --------~~~~~~~spDg~~i~asg~~D----------~tirl~w~~~~------g~l~~~l~-gH~d~V----iaS--  202 (330)
                              ....++|||||+.|+.+. .|          .+|++ |++++      +++. .+. .+.+.+    ++.  
T Consensus       123 ~~~~~~~~~~~~~~~spDg~~l~~~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG  199 (662)
T 3azo_A          123 VSAVGGGLRWADPVLLPERGEVWCMA-EEFTGEGPSDVRRFLAA-VPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDG  199 (662)
T ss_dssp             CCCSTTCEEEEEEEEETTTTEEEEEE-EEECSSSTTCEEEEEEE-EETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTS
T ss_pred             CccCCCCccccCcEECCCCCEEEEEE-ecccCCCCCCceeEEEE-EECCCCccccCCcee-EEEecCCCcccCceECCCC
Confidence                    335788999999966554 45          57888 99986      5554 444 554544    221  


Q ss_pred             HHHHHhhhccCC--------CcEEEEccc--C---ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CC--eEEEEeeCC
Q psy682          203 ISLAWKNCQRDT--------SDVKVHTTF--G---DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RG--HIAAFTMNG  266 (330)
Q Consensus       203 t~~lW~~SgS~D--------gtvkl~~~~--G---~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~--~~~~~s~nG  266 (330)
                      ..++   .++.|        .+|.+|+.+  |   +..+.+.+|..  .+..++|||||+++++++ ++  .|..+..++
T Consensus       200 ~~la---~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~--~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          200 RQAV---WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE--AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             SEEE---EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB--CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CEEE---EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc--eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence            2222   12222        468888775  5   44444444556  799999999999887775 44  566666534


Q ss_pred             ceee
Q psy682          267 NRLR  270 (330)
Q Consensus       267 ~~la  270 (330)
                      ..+.
T Consensus       275 ~~~~  278 (662)
T 3azo_A          275 GAAT  278 (662)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            4333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.94  E-value=2.5e-08  Score=92.62  Aligned_cols=249  Identities=9%  Similarity=-0.079  Sum_probs=125.5

Q ss_pred             CCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEe---------------CCCCCeeEeee
Q psy682            6 KGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKF---------------PSNSPICHVTA   70 (330)
Q Consensus         6 d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~F---------------s~~~~v~~~~~   70 (330)
                      +..|.+|++.+|+......++......++|||||+.  + +.....+.++.+..               +++|..+++.+
T Consensus        59 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~--l-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~  135 (396)
T 3c5m_A           59 NRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA--F-FYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSD  135 (396)
T ss_dssp             SCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE--E-EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT
T ss_pred             CceEEEEECCCCcEEEeecCCCCccccceECCCCCE--E-EEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEecc
Confidence            346888898877755444444444445889999987  1 11111222322221               22222222211


Q ss_pred             ccc--------eeccCCcEEEEE-----cCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCc-eeccCCCCC
Q psy682           71 NTY--------VTLHMPSVVTVT-----ANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPI-LTHPTSNNN  135 (330)
Q Consensus        71 ~~~--------~~~~~~~~v~vS-----~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~-l~~~s~~~~  135 (330)
                      ...        +.+.+++...+.     .+.+..|.+|+.+++.......+.    .....+.|+| |+. ++..+.+..
T Consensus       136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~----~~~~~~~~sp~dg~~l~~~~~~~~  211 (396)
T 3c5m_A          136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT----AWLGHPIYRPFDDSTVGFCHEGPH  211 (396)
T ss_dssp             SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEEEEEECSCS
T ss_pred             CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC----cccccceECCCCCCEEEEEecCCC
Confidence            100        111222211111     145667899998776655444332    2355789999 787 554333322


Q ss_pred             ----CCcceeccCCCCcccee-----eeeeEEEEecCCCeEEEeeccC----CeEEEeeeccccccccc--ccCCCCcEE
Q psy682          136 ----APVPKRHLGDNFSQKLR-----VRHNCFVTTVDSRFLLACGFWD----NSFREPFTTMYLALQEG--KFDHPNRLF  200 (330)
Q Consensus       136 ----~~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~i~asg~~D----~tirl~w~~~~g~l~~~--l~gH~d~Vi  200 (330)
                          ..++...+.+.-.+.+.     .....++|+|||++|+..+..+    ++|.+ |++++|+....  ..++. ..+
T Consensus       212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~-~d~~~g~~~~l~~~~~~~-~~~  289 (396)
T 3c5m_A          212 DLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK-ANPETLENEEVMVMPPCS-HLM  289 (396)
T ss_dssp             SSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE-ECTTTCCEEEEEECCSEE-EEE
T ss_pred             CCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE-EECCCCCeEEeeeCCCCC-CCc
Confidence                23444443221111111     1234578999999866655432    45899 99987765332  11221 112


Q ss_pred             Ee---HHHHHh-------------hhccCCCcEEEEcccCceeeecCCCCCCC---------CCcEEEeCCCccEEEEcc
Q psy682          201 SS---ISLAWK-------------NCQRDTSDVKVHTTFGDLLRSLDPPSGFA---------SPESVVMSREGVIVVNYE  255 (330)
Q Consensus       201 aS---t~~lW~-------------~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~---------~v~~v~fS~dG~~l~s~~  255 (330)
                      +.   ...+..             .+...++.|.+|+..+..++.|..+....         .+..++|||||+.|+..+
T Consensus       290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence            11   111100             00123577888887544456666554310         156789999999888763


Q ss_pred             --CCeEEEEe
Q psy682          256 --RGHIAAFT  263 (330)
Q Consensus       256 --~~~~~~~s  263 (330)
                        .+...+|.
T Consensus       370 ~~~~~~~l~~  379 (396)
T 3c5m_A          370 DFEGVPAIYI  379 (396)
T ss_dssp             CTTSSCEEEE
T ss_pred             cCCCCceEEE
Confidence              33434443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.93  E-value=1.8e-08  Score=91.14  Aligned_cols=106  Identities=9%  Similarity=0.008  Sum_probs=72.3

Q ss_pred             eEEEEe----cCCCeEEEeeccCCeEEEeeecc-ccc-----ccccccCCC-Cc---EEEe-HHHHHhhhccCCCcEEEE
Q psy682          156 NCFVTT----VDSRFLLACGFWDNSFREPFTTM-YLA-----LQEGKFDHP-NR---LFSS-ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       156 ~~~~~s----pDg~~i~asg~~D~tirl~w~~~-~g~-----l~~~l~gH~-d~---ViaS-t~~lW~~SgS~Dgtvkl~  220 (330)
                      +.++++    |||+.|+++...++.|.+ |+.+ +|+     ....+.++. ..   +..+ .=.+|- +...++.|.+|
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~~~~~~i~~~  252 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWS-YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV-ANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEE-EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE-EEETTTEEEEE
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEE-EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE-EEcCCCEEEEE
Confidence            567899    999887888777899999 9875 354     222333332 21   2222 223443 44567889999


Q ss_pred             ccc-CceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEeeC
Q psy682          221 TTF-GDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFTMN  265 (330)
Q Consensus       221 ~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s~n  265 (330)
                      +.+ |++++.+..+..  .+.+++|+|||+.| ++. .++.+..|.++
T Consensus       253 d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            887 999888887766  89999999999944 443 35678888765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.91  E-value=1.7e-08  Score=96.13  Aligned_cols=85  Identities=13%  Similarity=-0.009  Sum_probs=64.0

Q ss_pred             EEEecCCCeEEEeec----------cCCeEEEeeecccccccccccCCCCcE-E-Ee--HHHHHhhhccCCCcEEEEcc-
Q psy682          158 FVTTVDSRFLLACGF----------WDNSFREPFTTMYLALQEGKFDHPNRL-F-SS--ISLAWKNCQRDTSDVKVHTT-  222 (330)
Q Consensus       158 ~~~spDg~~i~asg~----------~D~tirl~w~~~~g~l~~~l~gH~d~V-i-aS--t~~lW~~SgS~Dgtvkl~~~-  222 (330)
                      ++|+||++.++++.+          ...+|.+ |++.+++.+.++..+. .- + .+  --.|+  +++. ++|.+|+. 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v-iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~--v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV-MDTKTKQRVARIPGRD-ALSMTIDQQRNLML--TLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEE-EETTTTEEEEEEECTT-CCEEEEETTTTEEE--EECS-SCEEEEECS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEE-EECCCCcEEEEEecCC-eeEEEECCCCCEEE--EeCC-CeEEEEECC
Confidence            789999999888754          1347888 9999999998888776 22 2 22  11333  3444 99999975 


Q ss_pred             cC--ceeeecCCCCCCCCCcEEEeCCCcc
Q psy682          223 FG--DLLRSLDPPSGFASPESVVMSREGV  249 (330)
Q Consensus       223 ~G--~ll~tL~~h~~~~~v~~v~fS~dG~  249 (330)
                      +|  ++++++.++..  .++.++|+|||.
T Consensus       334 t~~l~~~~~i~~~G~--~P~~~~~~p~G~  360 (361)
T 2oiz_A          334 QPEPKLLRTIEGAAE--ASLQVQFHPVGG  360 (361)
T ss_dssp             SSSCEEEEEETTSCS--SEEEEEECCCSC
T ss_pred             CCcceeeEEeccCCC--CcEEEEecCCCC
Confidence            79  99999876666  789999999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.89  E-value=1.2e-08  Score=92.61  Aligned_cols=208  Identities=10%  Similarity=-0.007  Sum_probs=125.3

Q ss_pred             ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN   96 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~   96 (330)
                      +..+..+..+.....+++|+|||+.                                        +.+++..++.|.+|+
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~----------------------------------------l~~~~~~~~~i~~~~   56 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSA----------------------------------------VIFSDVRQNRTWAWS   56 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTE----------------------------------------EEEEEGGGTEEEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCE----------------------------------------EEEEeCCCCEEEEEE
Confidence            4555666667777777777777762                                        135566677899999


Q ss_pred             CCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc-CCCCcccee-------eeeeEEEEecCCCeEE
Q psy682           97 PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL-GDNFSQKLR-------VRHNCFVTTVDSRFLL  168 (330)
Q Consensus        97 ~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l-~~~~~~~~~-------~~~~~~~~spDg~~i~  168 (330)
                      +++. ......+.    ..+..+.+++|+.+.++.. +...+..+.. .+.+..-..       ...+.++++|||++++
T Consensus        57 ~~~~-~~~~~~~~----~~~~~l~~~~dg~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v  130 (296)
T 3e5z_A           57 DDGQ-LSPEMHPS----HHQNGHCLNKQGHLIACSH-GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWF  130 (296)
T ss_dssp             TTSC-EEEEESSC----SSEEEEEECTTCCEEEEET-TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEE
T ss_pred             CCCC-eEEEECCC----CCcceeeECCCCcEEEEec-CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEE
Confidence            8776 44443333    3466799999999554222 2223334333 111111000       0124688999998754


Q ss_pred             Ee---eccC-----------CeEEEeeeccc-ccccccccCCCCcE---EEe-HHHHHhhhccCCCcEEEEcc--cCce-
Q psy682          169 AC---GFWD-----------NSFREPFTTMY-LALQEGKFDHPNRL---FSS-ISLAWKNCQRDTSDVKVHTT--FGDL-  226 (330)
Q Consensus       169 as---g~~D-----------~tirl~w~~~~-g~l~~~l~gH~d~V---iaS-t~~lW~~SgS~Dgtvkl~~~--~G~l-  226 (330)
                      +.   |+.+           +.-+| |.++. |++. .+.++....   ..+ .-+++ ++.+.++.|.+|+.  +|++ 
T Consensus       131 td~~~g~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~-~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~  207 (296)
T 3e5z_A          131 SDPTYGIDKPEEGYGGEMELPGRWV-FRLAPDGTLS-APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETE  207 (296)
T ss_dssp             EECSHHHHCGGGSSCCCCCSSSCEE-EEECTTSCEE-EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEE
T ss_pred             ECCccccccccccccccccCCCcEE-EEECCCCCEE-EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCc
Confidence            42   3211           12245 54432 4443 233333322   222 11112 27888899999976  5776 


Q ss_pred             --eeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCcc
Q psy682          227 --LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHND  276 (330)
Q Consensus       227 --l~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~  276 (330)
                        .+.+..+.+  .+..+++++||++.++. .+.+..|+++|+.+.......
T Consensus       208 ~~~~~~~~~~~--~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~  256 (296)
T 3e5z_A          208 YQGVHFTVEPG--KTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQ  256 (296)
T ss_dssp             EEEEEECCSSS--CCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSS
T ss_pred             CCCeEeeCCCC--CCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCC
Confidence              555633444  78999999999998888 788999999999988776543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.87  E-value=1.6e-08  Score=104.08  Aligned_cols=224  Identities=11%  Similarity=-0.007  Sum_probs=126.2

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEc
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTA   86 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~   86 (330)
                      .+|++|++.+|+.+.....+ ..+.+++|||||+.                        +++++.....-..+...+ ..
T Consensus       151 ~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~------------------------l~~~~~~~~~~~~~~~~~-~~  204 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKG------------------------MFYNAYPQQDGKSDGTET-ST  204 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSE------------------------EEEEECCCCSSCCSSSCC-CC
T ss_pred             EEEEEEECCCCCCCcccccC-cccceEEEEeCCCE------------------------EEEEEECCcccccccccc-cc
Confidence            48999999888766532222 22667888888776                        111111000000000000 01


Q ss_pred             CCcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC---CCCcceeccCC------C--Ccc
Q psy682           87 NHQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGD------N--FSQ  149 (330)
Q Consensus        87 ~~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~------~--~~~  149 (330)
                      .....|++|+..++...     +...|.    .....+.+||||+ ++..+..+   +..++.+.+..      .  -.+
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEP----KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCT----TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCC----eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence            23445888888654321     111121    1234789999999 44333212   23344444432      1  112


Q ss_pred             ceeeee--eEEEEecCCCeEEEeeccCC---eEEEeeeccccc--ccccccCCCCc-EEE----e---HHHHHhhhccCC
Q psy682          150 KLRVRH--NCFVTTVDSRFLLACGFWDN---SFREPFTTMYLA--LQEGKFDHPNR-LFS----S---ISLAWKNCQRDT  214 (330)
Q Consensus       150 ~~~~~~--~~~~~spDg~~i~asg~~D~---tirl~w~~~~g~--l~~~l~gH~d~-Via----S---t~~lW~~SgS~D  214 (330)
                      .+..+.  ....++|||+.|+..+..+.   .|.+ |++++++  ..+.+..|.+. ++.    +   .+.+   +++.|
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~---~~~~~  356 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLIN-IDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL---CYLHD  356 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE-EETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE---EEEET
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE---EEEEC
Confidence            222221  23358999998777665443   4777 8887664  24567777662 321    1   2222   77889


Q ss_pred             CcEEEE--cc-cCceeeecCCCCCCCCCcEEEeCCCccEEE-Ecc----CCeEEEEeeCC
Q psy682          215 SDVKVH--TT-FGDLLRSLDPPSGFASPESVVMSREGVIVV-NYE----RGHIAAFTMNG  266 (330)
Q Consensus       215 gtvkl~--~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~-s~~----~~~~~~~s~nG  266 (330)
                      +..+||  +. +|+.++.|..|.+  .|..++++|||..++ +++    ..++..|.+..
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             CEEEEEEEECCCCCEEEecCCCCc--eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            877775  55 7999999998866  899999999997665 332    46788888754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.83  E-value=1.2e-07  Score=88.78  Aligned_cols=229  Identities=10%  Similarity=0.044  Sum_probs=137.8

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeee-cCccEEEEEeCCCCCee-Eeeecc------c-
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDVCMSLKFPSNSPIC-HVTANT------Y-   73 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~-~~d~~~~v~Fs~~~~v~-~~~~~~------~-   73 (330)
                      ...+++|.+||..+++.+.+++. ....+.|+|+|||++    +... .+..+..+-.. .++++ .+....      . 
T Consensus        60 ~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~l----yv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           60 VNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKA----YVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGST  133 (328)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEE----EEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBC
T ss_pred             EcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeE----EEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCc
Confidence            34578999999999999999864 577899999999865    3332 33444333221 12222 111111      1 


Q ss_pred             --eeccCCcEEEEEcC-CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCC---------CCCccee
Q psy682           74 --VTLHMPSVVTVTAN-HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN---------NAPVPKR  141 (330)
Q Consensus        74 --~~~~~~~~v~vS~~-~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~---------~~~~~~~  141 (330)
                        +.+ ....+-|+.. .+.+|.++++..........-    ...+..+.+++|+++...+.+.         ...+...
T Consensus       134 ~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          134 EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence              223 3344445543 477899999876553332211    1235679999999955433332         1223333


Q ss_pred             ccC-CCCccceee----eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCc
Q psy682          142 HLG-DNFSQKLRV----RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSD  216 (330)
Q Consensus       142 ~l~-~~~~~~~~~----~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgt  216 (330)
                      ... ..+.+++..    +...++++||+++|+++..   +|.+ |+.+++++....+-                      
T Consensus       209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~-~d~~t~~~~~~~~~----------------------  262 (328)
T 3dsm_A          209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWR-MPVEADRVPVRPFL----------------------  262 (328)
T ss_dssp             ETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEE-EETTCSSCCSSCSB----------------------
T ss_pred             ECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEE-EECCCCceeeeeee----------------------
Confidence            321 111122222    3468899999999888753   7777 88877765421110                      


Q ss_pred             EEEEcccCceeeecCCCCCCCCCcEEEeCC-CccEEEEc-----cCCeEEEEeeCCceeeeccCccccccccccccchh
Q psy682          217 VKVHTTFGDLLRSLDPPSGFASPESVVMSR-EGVIVVNY-----ERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLP  289 (330)
Q Consensus       217 vkl~~~~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~-----~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p  289 (330)
                                    ..+..  .+..++++| +|.+.++.     ..+.+..|+++|+.+.+...     ...|.-+.+|
T Consensus       263 --------------~~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~-----G~~P~~~~~~  320 (328)
T 3dsm_A          263 --------------EFRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYV-----GIIPGAFCWK  320 (328)
T ss_dssp             --------------CCCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEE-----EESEEEEEEE
T ss_pred             --------------cCCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEe-----ccCcceEEEe
Confidence                          00012  689999999 67777775     46789999999999988742     3446666665

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.81  E-value=4.4e-08  Score=89.19  Aligned_cols=194  Identities=9%  Similarity=-0.026  Sum_probs=111.4

Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV  153 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~  153 (330)
                      +.++..+.|+++.+++|++|+....... +...+..   ..+..+.|+||++.+..+...+..+..+.+.. .....+..
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            3444445688888899999998765543 3222210   13567999999983222222233344444321 11111221


Q ss_pred             e---------eeEEEEecCCCeEEEeecc-----------CCeEEEeeecccccccc---cccCCCCcE---EEeHHHHH
Q psy682          154 R---------HNCFVTTVDSRFLLACGFW-----------DNSFREPFTTMYLALQE---GKFDHPNRL---FSSISLAW  207 (330)
Q Consensus       154 ~---------~~~~~~spDg~~i~asg~~-----------D~tirl~w~~~~g~l~~---~l~gH~d~V---iaSt~~lW  207 (330)
                      .         ..+++|+|||++|++++..           ++.|++ |++++++..+   ....+....   +...-++|
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV-FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE-EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE-EECCCccccceeeeccCCCcccceeECCCCcEE
Confidence            1         2578899999997777632           489999 9998865433   222222211   21111122


Q ss_pred             hhhccCCCcEEEEcc-cCceeeecCCCCC---------------------------------------------------
Q psy682          208 KNCQRDTSDVKVHTT-FGDLLRSLDPPSG---------------------------------------------------  235 (330)
Q Consensus       208 ~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~---------------------------------------------------  235 (330)
                        .++  +.|.+|+. +|+.++++..+..                                                   
T Consensus       163 --~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          163 --VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             --EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             --Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence              122  34888875 6888777654320                                                   


Q ss_pred             ---------------CCCCcEEEeCC-CccEEEEccCCeEEEEeeC-CceeeeccCcccc
Q psy682          236 ---------------FASPESVVMSR-EGVIVVNYERGHIAAFTMN-GNRLRHESHNDNL  278 (330)
Q Consensus       236 ---------------~~~v~~v~fS~-dG~~l~s~~~~~~~~~s~n-G~~las~~~~~dV  278 (330)
                                     ...+..++||| ||+.++.+ ++.+..|..+ |+.+........+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~  297 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY  297 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCC
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCc
Confidence                           00345778889 99988888 7889989764 5555655443333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.80  E-value=6.7e-08  Score=90.09  Aligned_cols=111  Identities=7%  Similarity=-0.023  Sum_probs=67.4

Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----E-Ee---HHHH--------------H-----hhh
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----F-SS---ISLA--------------W-----KNC  210 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----i-aS---t~~l--------------W-----~~S  210 (330)
                      .++||||+.|+.+. .++.|++ |++++|+.......+...+    + ++   +..+              |     ..+
T Consensus        86 ~~~spdg~~l~~~~-~~~~l~~-~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           86 GFLSPDDDALFYVK-DGRNLMR-VDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             CEECTTSSEEEEEE-TTTEEEE-EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             eEEcCCCCEEEEEe-CCCeEEE-EECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            45889998855544 6788888 8888777655444444433    0 01   0000              0     114


Q ss_pred             ccCCCcEEEEcccCceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-------CCeEEEEeeCCceeeec
Q psy682          211 QRDTSDVKVHTTFGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-------RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       211 gS~Dgtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-------~~~~~~~s~nG~~las~  272 (330)
                      ++.++.|.+|+..+..++.|..+..  .+..++||| ||+.||...       ...|..+..+|..+..+
T Consensus       164 ~~~~~~l~~~d~~~g~~~~l~~~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGESTVILQENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             GCCCEEEEEEETTTCCEEEEEEESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred             cCCcceEEEEECCCCceEEeecCCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence            5667788888765444556666555  789999999 999888753       22455555555444433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.78  E-value=9.4e-08  Score=84.70  Aligned_cols=169  Identities=10%  Similarity=0.004  Sum_probs=99.5

Q ss_pred             cceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccce--e--eeeeEEEEecCC
Q psy682           89 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL--R--VRHNCFVTTVDS  164 (330)
Q Consensus        89 ~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~--~--~~~~~~~~spDg  164 (330)
                      +..|.+|+.++..........   ...+..+.+.+|+.+..+.. .+..+.....+.......  .  .....+++++||
T Consensus        86 ~~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  161 (270)
T 1rwi_B           86 NNRVVTLAAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADR-GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  161 (270)
T ss_dssp             TTEEEEECTTCSCCEECCCCS---CSSEEEEEECTTCCEEEEEG-GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred             CCEEEEEeCCCceEeeeecCC---cCCCcceEECCCCCEEEEEC-CCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence            567888888776544432111   12456788888888443211 112233332221110000  0  123578899999


Q ss_pred             CeEEEeeccCCeEEEeeecccccccccccCCCCcE--E-Ee-HHHHHhhhccCCCcEEEEcccCceeeecCC-CCCCCCC
Q psy682          165 RFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--F-SS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDP-PSGFASP  239 (330)
Q Consensus       165 ~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--i-aS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~-h~~~~~v  239 (330)
                      ++ +++...++.|.+ |+.++++.......+....  + .. .=.+|- +...++.|.+++.+|+....+.. +..  .+
T Consensus       162 ~l-~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~~~~~~~~~~~~~--~p  236 (270)
T 1rwi_B          162 NV-YVTDTDNNRVVK-LEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGSTTSTVLPFTGLN--TP  236 (270)
T ss_dssp             CE-EEEEGGGTEEEE-ECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTCSCCEECCCCSCS--CE
T ss_pred             CE-EEEECCCCEEEE-EecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCCCcceeeccCCCC--Cc
Confidence            85 666666889999 9987555433333332222  2 22 113443 56668899999888876655432 223  68


Q ss_pred             cEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          240 ESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       240 ~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                      ..|+++|||++.++. .++.+..|..+.
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            999999999988776 578888887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.71  E-value=7.8e-07  Score=81.71  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             eEEEEecCCCeEEEeecc-----CCeEEEeeecccccc------cccccCCCCcEEE-eHHHHHhhhccCCCcEEEEccc
Q psy682          156 NCFVTTVDSRFLLACGFW-----DNSFREPFTTMYLAL------QEGKFDHPNRLFS-SISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~-----D~tirl~w~~~~g~l------~~~l~gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      +.++|+|||+.|+.+.+.     .+.|++ |+++.+.+      .....+..+-+.. +.=.+|-  +..+| |.+|+.+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv--~~~~g-v~~~~~~  266 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITA-FAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS--SSGTG-VCVFDSD  266 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEE-EEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE--CCSSE-EEEECTT
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEE-EEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE--ecCCc-EEEECCC
Confidence            568899999988887654     268888 88764322      1111334444432 2223553  33444 8889999


Q ss_pred             CceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEE
Q psy682          224 GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF  262 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~  262 (330)
                      |+++..+..+.   .+.+++|+|||+.|.-+..+.+..+
T Consensus       267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            99999988664   4899999999987765544444433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.70  E-value=2.1e-07  Score=85.32  Aligned_cols=223  Identities=11%  Similarity=0.073  Sum_probs=125.4

Q ss_pred             CceeEEEeCCCCCc-Ccc--------------eeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceE
Q psy682           28 SSVRSLALSHDQKY-SPM--------------MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAI   92 (330)
Q Consensus        28 ~~V~svafSpdg~~-~~l--------------~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv   92 (330)
                      ..|++++|+|++.. .++              .....+......+.|+|++.+.                 +++..++.|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-----------------~~~~~~~~i   68 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLF-----------------LLDVFEGNI   68 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEE-----------------EEETTTCEE
T ss_pred             cccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEE-----------------EEECCCCEE
Confidence            34677788887665 111              1122334455777788888753                 555667789


Q ss_pred             EEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCC---CCCcceeccCCCCcc-ce-----eeeeeEEEEec
Q psy682           93 NRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNN---NAPVPKRHLGDNFSQ-KL-----RVRHNCFVTTV  162 (330)
Q Consensus        93 ~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~---~~~~~~~~l~~~~~~-~~-----~~~~~~~~~sp  162 (330)
                      .+|+++++...... .+.    ..+..+.+++|+.+.+++.+.   ..++..+...+.... .+     ....+.++++|
T Consensus        69 ~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~  144 (333)
T 2dg1_A           69 FKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS  144 (333)
T ss_dssp             EEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred             EEEeCCCCcEEEEeeCCC----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence            99999876655432 232    356789999999854432221   123433332221111 01     11235788999


Q ss_pred             CCCeEEEeecc---CCeEEE-eeecccccccccccC--CCCcE-EEeH-HHHHhhhccCCCcEEEEcc--cCceeee---
Q psy682          163 DSRFLLACGFW---DNSFRE-PFTTMYLALQEGKFD--HPNRL-FSSI-SLAWKNCQRDTSDVKVHTT--FGDLLRS---  229 (330)
Q Consensus       163 Dg~~i~asg~~---D~tirl-~w~~~~g~l~~~l~g--H~d~V-iaSt-~~lW~~SgS~Dgtvkl~~~--~G~ll~t---  229 (330)
                      ||++++++...   +...+| -++.+++++.....+  ....+ +... -.+|- +.+.++.|.+|+.  +|+.+..   
T Consensus       145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v-~~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV-TETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE-EEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEE-EeCCCCeEEEEEecCCCcCcccccc
Confidence            99875544311   123344 044443443321111  11111 1111 11222 4556788888876  5654432   


Q ss_pred             -----cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682          230 -----LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       230 -----L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~  275 (330)
                           +.++ .  .+..+++++||++.++. .++.+..|+++|+.+......
T Consensus       224 ~~~~~~~~~-~--~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~  272 (333)
T 2dg1_A          224 TIPYYFTGH-E--GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP  272 (333)
T ss_dssp             EEEEECCSS-S--EEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred             eEEEecCCC-C--CCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcC
Confidence                 2332 2  68899999999988876 468899999999988776543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.70  E-value=7.5e-08  Score=88.38  Aligned_cols=93  Identities=12%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeec--cccccc-----cccc---CCCCcEEE-eHHHHHhhhccCCCcEEEEccc-
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTT--MYLALQ-----EGKF---DHPNRLFS-SISLAWKNCQRDTSDVKVHTTF-  223 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~--~~g~l~-----~~l~---gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~-  223 (330)
                      +.++++||++.|+.+.+.++.|.+ |++  ++|++.     ..+.   ++.+-+.. +-=.+|- +...++.|..|+.+ 
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~-~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv-a~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDA-FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV-ACYNGGRVIRLDPVT  229 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEE-EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE-EEETTTEEEEECTTT
T ss_pred             cceEEcCCCCEEEEecCCCCcEEE-EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE-EEcCCCEEEEEcCCC
Confidence            678899999998898888899998 876  456542     1111   22233322 2223454 55556789999885 


Q ss_pred             CceeeecCCCCCCCCCcEEEeC-CCccEEE
Q psy682          224 GDLLRSLDPPSGFASPESVVMS-REGVIVV  252 (330)
Q Consensus       224 G~ll~tL~~h~~~~~v~~v~fS-~dG~~l~  252 (330)
                      |++++++..|..  .|.+++|+ ||++.|.
T Consensus       230 G~~~~~i~~p~~--~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          230 GKRLQTVKLPVD--KTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             CCEEEEEECSSS--BEEEEEEESGGGCEEE
T ss_pred             ceEEEEEECCCC--CceEEEEeCCCCCEEE
Confidence            999999988766  79999998 8988663

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.66  E-value=5.8e-07  Score=92.31  Aligned_cols=203  Identities=11%  Similarity=-0.015  Sum_probs=114.4

Q ss_pred             cCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-ee
Q psy682           50 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT  128 (330)
Q Consensus        50 ~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~  128 (330)
                      |+..+..+.|||||+.|+++..            -+++.+.+|++|+.+++...+ ..+-..+  ....++++||++ ++
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~------------~~G~~~~~i~v~dl~tg~~~~-~~~~~~~--~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQK------------PNAADEAVLHVIDVDSGEWSK-VDVIEGG--KYATPKWTPDSKGFY  183 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEE------------ETTCSCCEEEEEETTTCCBCS-SCCBSCC--TTCCCEECTTSSEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEC------------CCCCceEEEEEEECCCCCCcC-CcccCcc--cccceEEecCCCEEE
Confidence            3345667777777777654422            355567899999998876541 1121111  125799999999 55


Q ss_pred             ccCCCCC-----------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeeccC-C--eEEEeeecccc
Q psy682          129 HPTSNNN-----------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFWD-N--SFREPFTTMYL  186 (330)
Q Consensus       129 ~~s~~~~-----------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~D-~--tirl~w~~~~g  186 (330)
                      ..+.+..           ..++.+.++..-.+...+        ....+++||||++|+.+...+ .  .|.+ |+..++
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~-~~~~~~  262 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW-KRPGEK  262 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE-ECTTCS
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE-EcCCCC
Confidence            4333221           115566665433211111        124678999999977665433 2  4555 655445


Q ss_pred             cccccccCCCCcEE---Ee--HHHHHhhhc---cCCCcEEEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          187 ALQEGKFDHPNRLF---SS--ISLAWKNCQ---RDTSDVKVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       187 ~l~~~l~gH~d~Vi---aS--t~~lW~~Sg---S~Dgtvkl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      ++ ..+..+.+.+.   .+  .  ++- +.   ..++.|.+|+.+ |+.  .+.|.+|.....+..++|+ ++++++++.
T Consensus       263 ~~-~~l~~~~~~~~~~~~~~g~--l~~-~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          263 DF-RLLVKGVGAKYEVHAWKDR--FYV-LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             SC-EEEEECSSCCEEEEEETTE--EEE-EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             ce-EEeecCCCceEEEEecCCc--EEE-EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            43 34444444331   11  2  111 22   246788888774 443  3566555321268889999 788888884


Q ss_pred             -CCeEE--EEeeCCceeeecc
Q psy682          256 -RGHIA--AFTMNGNRLRHES  273 (330)
Q Consensus       256 -~~~~~--~~s~nG~~las~~  273 (330)
                       ++...  .+..+|+.+..+.
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~  358 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQ  358 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECC
T ss_pred             ECCEEEEEEEeCCCCeeEEec
Confidence             55544  4455687666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.65  E-value=3e-07  Score=94.55  Aligned_cols=204  Identities=12%  Similarity=-0.006  Sum_probs=120.3

Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eecc
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHP  130 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~  130 (330)
                      .+..+.|||||+.|+++..            -.++...+|++|+.+++...... .+.     ....+.++||++ ++..
T Consensus       126 ~~~~~~~SPDg~~la~~~~------------~~G~~~~~i~v~d~~tg~~~~~~~~~~-----~~~~~~wspDg~~l~~~  188 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLS------------ASGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYN  188 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEE------------ETTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEc------------CCCCceEEEEEEECCCCCCCcccccCc-----ccceEEEEeCCCEEEEE
Confidence            4677788888887754421            22333458999999877654422 221     245699999998 5543


Q ss_pred             CCCCC--------------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeecc----CCeEEEeeecc
Q psy682          131 TSNNN--------------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFW----DNSFREPFTTM  184 (330)
Q Consensus       131 s~~~~--------------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~----D~tirl~w~~~  184 (330)
                      +.+..              ..++.+.++..-.+...+        ....+++||||++|+.+...    +..|.+ |+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~-~d~~  267 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY-CDLQ  267 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE-EEGG
T ss_pred             EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE-EECc
Confidence            33322              114555655432221111        12367899999997766531    567888 9987


Q ss_pred             c------cc-ccccccCCCCcE---EEe---HHHHHhhhccCCCcEEEEccc-Cc--eeeecCCCCCCCCCcEEEeCCCc
Q psy682          185 Y------LA-LQEGKFDHPNRL---FSS---ISLAWKNCQRDTSDVKVHTTF-GD--LLRSLDPPSGFASPESVVMSREG  248 (330)
Q Consensus       185 ~------g~-l~~~l~gH~d~V---iaS---t~~lW~~SgS~Dgtvkl~~~~-G~--ll~tL~~h~~~~~v~~v~fS~dG  248 (330)
                      +      ++ ....+.+|.+.+   +..   .+.+-...+...+.|.+|+.. |+  ..++|.+|.....+..+++++++
T Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          268 QESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             GSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred             ccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence            6      53 355666666654   221   111100011223457777664 33  34677776542257889999999


Q ss_pred             cEEEEcc-CC--eEEEEee-CCceeeeccC
Q psy682          249 VIVVNYE-RG--HIAAFTM-NGNRLRHESH  274 (330)
Q Consensus       249 ~~l~s~~-~~--~~~~~s~-nG~~las~~~  274 (330)
                      ++++++. ++  .|..|.. +|+.+..+..
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~  377 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLKIFPL  377 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEEecCC
Confidence            9999984 44  4666776 7876665543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.62  E-value=3.1e-08  Score=91.99  Aligned_cols=246  Identities=8%  Similarity=0.000  Sum_probs=121.5

Q ss_pred             ecccccccceeecCCCc-----eeEEEeCCCCCcCcceeeeec--CccEEEEEeCCCCCeeEeeec----cc-eeccCCc
Q psy682           13 RTFNLALLYAFPSCDSS-----VRSLALSHDQKYSPMMFSTVL--DDVCMSLKFPSNSPICHVTAN----TY-VTLHMPS   80 (330)
Q Consensus        13 ~~~~g~~l~tl~gH~~~-----V~svafSpdg~~~~l~~~~~~--~d~~~~v~Fs~~~~v~~~~~~----~~-~~~~~~~   80 (330)
                      +..+|+.+..+..+...     +.+++|||||+.  +.+....  ...++.+.. ..++...+...    .. +.+++++
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~--l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKK--LLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCE--EEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCC
Confidence            66788888888766544     889999999987  1111111  112222221 11222112110    11 3345555


Q ss_pred             EEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCC-------------------ccccCCCc-eeccC---CCCCC
Q psy682           81 VVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGN-------------------LPLTLDPI-LTHPT---SNNNA  136 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~-------------------l~fs~D~~-l~~~s---~~~~~  136 (330)
                      ..++..+.+..|.+|+.+++...... .+.+    ....                   ..++||+. ++...   .+...
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTT----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccc----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence            44455555557999998876644332 1221    1111                   46778877 33211   02222


Q ss_pred             CcceeccCCCCccceeee---eeEEEEec-CCCeEEEeecc-C----CeEEEeeecccccccccccCCC-C-cE----EE
Q psy682          137 PVPKRHLGDNFSQKLRVR---HNCFVTTV-DSRFLLACGFW-D----NSFREPFTTMYLALQEGKFDHP-N-RL----FS  201 (330)
Q Consensus       137 ~~~~~~l~~~~~~~~~~~---~~~~~~sp-Dg~~i~asg~~-D----~tirl~w~~~~g~l~~~l~gH~-d-~V----ia  201 (330)
                      .++.+.+...-...+...   ...++++| ||+.|+.+... +    ..|.+ |+++++++.. +..+. . .+    ++
T Consensus       169 ~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~-~d~~~~~~~~-l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL-VNEDGSNVRK-IKEHAEGESCTHEFWI  246 (396)
T ss_dssp             EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE-EETTSCCCEE-SSCCCTTEEEEEEEEC
T ss_pred             eEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE-EECCCCceeE-eeccCCCccccceEEC
Confidence            334444322111111111   24678999 88865554421 1    35777 8886555433 33332 2 22    11


Q ss_pred             e--HHHHHhh--hccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCC-CccEEEEcc-----------------CCe
Q psy682          202 S--ISLAWKN--CQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-----------------RGH  258 (330)
Q Consensus       202 S--t~~lW~~--SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~-dG~~l~s~~-----------------~~~  258 (330)
                      .  ..+++..  .+..+++|.+|+.. |+.. .+....+   .. ++||| ||+.++.++                 +..
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVMPP---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEECCS---EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeCCC---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            1  1111110  12223558889864 5443 3322112   23 89999 999888742                 356


Q ss_pred             EEEEeeCCceeeec
Q psy682          259 IAAFTMNGNRLRHE  272 (330)
Q Consensus       259 ~~~~s~nG~~las~  272 (330)
                      +..|..++..+..+
T Consensus       322 i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          322 LYVLNTKAKSAQKL  335 (396)
T ss_dssp             EEEEETTTTBCCEE
T ss_pred             EEEEecccCceEEc
Confidence            88888776554443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.57  E-value=7.7e-07  Score=81.90  Aligned_cols=180  Identities=13%  Similarity=0.032  Sum_probs=118.3

Q ss_pred             CCcEEEEEcCCcceEEEeCC-CCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCC------CCcceeccCCCCccc
Q psy682           78 MPSVVTVTANHQFAINRWNP-DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN------APVPKRHLGDNFSQK  150 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~-~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~------~~~~~~~l~~~~~~~  150 (330)
                      +|..++++++.+..|.+|+. ++..+.+...+..   ..+..+.++|||.+.. +.+..      .+...|++..+  ..
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~--~~   76 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAP--AG   76 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECC--TT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCC--CC
Confidence            45556788999999999999 6666666665431   2466799999999654 22211      22233333221  00


Q ss_pred             eeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc------CCCCc---E-EEe--HHHHHhhhccCCCcEE
Q psy682          151 LRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF------DHPNR---L-FSS--ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       151 ~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~------gH~d~---V-iaS--t~~lW~~SgS~Dgtvk  218 (330)
                      .  ...+..+.|||+++++.+..++.+.. ++. +|+++..+.      ++...   + +..  .+.+   +.+.++.|.
T Consensus        77 ~--~~~~~~~~~dG~~lv~~~~~~~~v~~-vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv---~~~~~~~v~  149 (276)
T 3no2_A           77 C--EMQTARILPDGNALVAWCGHPSTILE-VNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV---PLFATSEVR  149 (276)
T ss_dssp             C--EEEEEEECTTSCEEEEEESTTEEEEE-ECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE---EETTTTEEE
T ss_pred             c--cccccEECCCCCEEEEecCCCCEEEE-EeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE---EecCCCEEE
Confidence            1  22456789999996665422555555 665 476543332      11000   1 111  2222   677899999


Q ss_pred             EEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-Cceeeecc
Q psy682          219 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       219 l~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~  273 (330)
                      .++.+|+++.++..+ +  .+.++.+.++|.+++.+. .++++.|.++ |+.+-+..
T Consensus       150 ~~d~~G~~~w~~~~~-~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          150 EIAPNGQLLNSVKLS-G--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EECTTSCEEEEEECS-S--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EECCCCCEEEEEECC-C--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999999999999875 3  578999999999998875 5689999999 99988875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.55  E-value=8.4e-07  Score=82.53  Aligned_cols=173  Identities=9%  Similarity=-0.049  Sum_probs=107.6

Q ss_pred             cccCCCcEEEeeccccc--cccee---------ecCCCceeEEEeCC-CCCcCcceeeeecCccEEEEEeCCCCCeeEee
Q psy682            2 SGGDKGIVEVWRTFNLA--LLYAF---------PSCDSSVRSLALSH-DQKYSPMMFSTVLDDVCMSLKFPSNSPICHVT   69 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~--~l~tl---------~gH~~~V~svafSp-dg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~   69 (330)
                      +...++.|+.|+.+ |+  .+.++         .++-...++|+|+| +|++    +.......-...+|.++|.++...
T Consensus       107 ~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l----yv~d~~~~~~I~~~~~~g~~~~~~  181 (329)
T 3fvz_A          107 TDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV----FVSDGYCNSRIVQFSPSGKFVTQW  181 (329)
T ss_dssp             EETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE----EEEECSSCCEEEEECTTSCEEEEE
T ss_pred             EECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeE----EEEeCCCCCeEEEEcCCCCEEEEe
Confidence            44567899999984 55  56666         46777899999999 7877    555431122334566888877654


Q ss_pred             e---------------ccceeccCC-cEEEEEcCCcceEEEeCCC-CCCcccCC--CCCCCCCCCCCCccccC------C
Q psy682           70 A---------------NTYVTLHMP-SVVTVTANHQFAINRWNPD-YAASIQSP--SYAETPGSPPGNLPLTL------D  124 (330)
Q Consensus        70 ~---------------~~~~~~~~~-~~v~vS~~~~~tv~lW~~~-~~~~~~~~--~h~~~~~~~~~~l~fs~------D  124 (330)
                      .               ...+.+.++ +.+.|+...+..|++|+++ +..+.+..  ++.    ..+..+.|+|      |
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG----RNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT----TCEEEEEEETTEEEEEE
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC----CCcceeeecCCEEEEeC
Confidence            3               223566776 7888888889999999998 54444432  332    3455777888      5


Q ss_pred             CceeccCCCCCCCcceecc-CCCCccce------eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc
Q psy682          125 PILTHPTSNNNAPVPKRHL-GDNFSQKL------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA  187 (330)
Q Consensus       125 ~~l~~~s~~~~~~~~~~~l-~~~~~~~~------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~  187 (330)
                      +.+..+ ...+..+..+.. .+.+..++      ......++++||| .|+++...+++|++ |+++ ++
T Consensus       258 g~~~v~-~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~-~~~~-~~  323 (329)
T 3fvz_A          258 GKPYFG-DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWK-FTLT-EK  323 (329)
T ss_dssp             CCCCTT-CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEE-EEEE-EC
T ss_pred             CCEEec-cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEE-EeCC-cc
Confidence            542221 111112222221 11111111      0113578899999 56888888999999 9996 44

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.53  E-value=7.1e-08  Score=99.88  Aligned_cols=133  Identities=10%  Similarity=-0.024  Sum_probs=92.1

Q ss_pred             eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCc--------EEEe---HHHHHhhhccCC--------
Q psy682          154 RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNR--------LFSS---ISLAWKNCQRDT--------  214 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~--------ViaS---t~~lW~~SgS~D--------  214 (330)
                      +..+++++|||+++++ +  |++|++ |++.+|+....+.+|...        +..|   ..++   .++.|        
T Consensus        18 ~~~~~~w~~dg~~~~~-~--~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~---~~~~~~~~~r~~~   90 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYK-Q--ENNILV-FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFIL---LEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCEEECSSSEEEEE-E--TTEEEE-EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEE---EEEEEEECSSSCE
T ss_pred             cccccEECCCCcEEEE-c--CCcEEE-EECCCCceEEEEechhhhhhcccccceEECCCCCEEE---EEECCeeeEEEcc
Confidence            4457889999988554 4  999999 999999877777777532        1112   1111   23333        


Q ss_pred             -CcEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccc---cccccccccchhh
Q psy682          215 -SDVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN---LQELIPELFFLPE  290 (330)
Q Consensus       215 -gtvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~d---VkELipef~~~p~  290 (330)
                       +.+.||+..+..++.|.+|.+  .+..++|||||+.||...++.|.++..++.....+..+..   +..-+|+|.|..|
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~~~--~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERIPN--NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCCCT--TEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             ceEEEEEECCCCcEEEcccCCC--cceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence             456689886555667888877  8999999999999999999999999987765555543332   2233467777766


Q ss_pred             hhccc
Q psy682          291 MLVNS  295 (330)
Q Consensus       291 ~l~n~  295 (330)
                      +|-..
T Consensus       169 ~~~~~  173 (740)
T 4a5s_A          169 VFSAY  173 (740)
T ss_dssp             TSSSS
T ss_pred             hcCCC
Confidence            54433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.45  E-value=5.2e-07  Score=93.49  Aligned_cols=175  Identities=9%  Similarity=-0.044  Sum_probs=98.8

Q ss_pred             CcceEEEeCCCCCCcc-----cCCCCCCCCCCCCCCccccCCCc-eeccCCCC---CCCcceeccCCC--C-ccceeeee
Q psy682           88 HQFAINRWNPDYAASI-----QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNN---NAPVPKRHLGDN--F-SQKLRVRH  155 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~-----~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~---~~~~~~~~l~~~--~-~~~~~~~~  155 (330)
                      ....|.+|+..++...     ....|.    .....+.+||||+ ++..+...   ...++.+.+.+.  - ...+..+.
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  316 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELP----KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL  316 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCT----TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCC----eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence            3455788887544311     111111    1245788999998 44433222   233444444222  1 12222221


Q ss_pred             --eEEEEecCCCeEEEeeccC---CeEEEeeecccc--cccccccCCCCcE--EE-e--HHHHHhhhccCCCcEEEEc--
Q psy682          156 --NCFVTTVDSRFLLACGFWD---NSFREPFTTMYL--ALQEGKFDHPNRL--FS-S--ISLAWKNCQRDTSDVKVHT--  221 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D---~tirl~w~~~~g--~l~~~l~gH~d~V--ia-S--t~~lW~~SgS~Dgtvkl~~--  221 (330)
                        ....++|||+.|+.....+   ..|.+ |+++++  +....+.++.+.+  ++ +  .+.+   +.+.||..+||.  
T Consensus       317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~-~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~---~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVR-VDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA---SYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEE-EECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE---EEEETTEEEEEEEE
T ss_pred             CceEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCccccEEEecCCCCeEEEEEEECCEEEE---EEEECCEEEEEEEe
Confidence              1222569999877665432   33677 888764  3443343444433  11 1  2222   788899999984  


Q ss_pred             ccCceeeecCCC-CCCCCCcEEEeCCCccEEE-Ecc----CCeEEEEeeCCceeeec
Q psy682          222 TFGDLLRSLDPP-SGFASPESVVMSREGVIVV-NYE----RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       222 ~~G~ll~tL~~h-~~~~~v~~v~fS~dG~~l~-s~~----~~~~~~~s~nG~~las~  272 (330)
                      .+|+.++.|..+ .+  .|..++++|||+.|+ +++    .+++..|.+++..+..+
T Consensus       393 ~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          393 LDGKPAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             TTSCEEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             CCCCceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            469888888764 44  789999999998665 332    46788898876554444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.45  E-value=3.1e-05  Score=68.67  Aligned_cols=244  Identities=15%  Similarity=0.080  Sum_probs=136.9

Q ss_pred             CCCcEEEeecccccccc-eeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceec
Q psy682            5 DKGIVEVWRTFNLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTL   76 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~   76 (330)
                      .++.|..|+.. |+... .+..+...+.+++++|+|.+    ..... ...+  .+|.+++.+..+..      ...+.+
T Consensus        34 ~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l----~v~~~~~~~i--~~~~~~g~~~~~~~~~~~~~~~~i~~  106 (299)
T 2z2n_A           34 KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEV----WFTENAANKI--GRITKKGIIKEYTLPNPDSAPYGITE  106 (299)
T ss_dssp             TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCE----EEeCCCCCeE--EEECCCCcEEEEeCCCcCCCceeeEE
Confidence            36789999886 55332 22346688999999999987    33322 2222  23444444432221      111334


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccc-e---
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK-L---  151 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~-~---  151 (330)
                      .+++.+-++......|..|++++..... .+.+    ...+..+.+.+|+.+-.+.. ....+.+....+.+... +   
T Consensus       107 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~  181 (299)
T 2z2n_A          107 GPNGDIWFTEMNGNRIGRITDDGKIREYELPNK----GSYPSFITLGSDNALWFTEN-QNNAIGRITESGDITEFKIPTP  181 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCCEEEEECSST----TCCEEEEEECTTSCEEEEET-TTTEEEEECTTCCEEEEECSST
T ss_pred             CCCCCEEEEecCCceEEEECCCCCEEEecCCCC----CCCCceEEEcCCCCEEEEeC-CCCEEEEEcCCCcEEEeeCCCC
Confidence            4555556666667778999884432211 1111    13456788899988443221 12223333321111100 0   


Q ss_pred             eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCce
Q psy682          152 RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       152 ~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      ......+++.+||++ +++...++.|.+ |+. +|+.... +..+...+  + . ..=.+|- +...++.|..++.+|++
T Consensus       182 ~~~~~~i~~~~~g~l-~v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~~g~~  257 (299)
T 2z2n_A          182 ASGPVGITKGNDDAL-WFVEIIGNKIGR-ITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTSNNII  257 (299)
T ss_dssp             TCCEEEEEECTTSSE-EEEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEETTTEE
T ss_pred             CCcceeEEECCCCCE-EEEccCCceEEE-ECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECCCCce
Confidence            012347889999986 555556788988 888 6765432 22222333  2 1 2223453 44457788888877865


Q ss_pred             eee-cCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682          227 LRS-LDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       227 l~t-L~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~  267 (330)
                      ..- +..+..  .+.++++ ++|++.++...+.+..|.++.+
T Consensus       258 ~~~~~~~~~~--~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          258 EEYPIQIKSA--EPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             EEEECSSSSC--CEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             EEEeCCCCCC--ccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence            433 333334  7999999 9999999876777887776654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.42  E-value=1.4e-06  Score=88.93  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccc-----cCCCCcE--EEe--HHHHHhhhccCCCcEEEEcc-c---
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-----FDHPNRL--FSS--ISLAWKNCQRDTSDVKVHTT-F---  223 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-----~gH~d~V--iaS--t~~lW~~SgS~Dgtvkl~~~-~---  223 (330)
                      .+.|+|||++++++...+++|.+ +++.+++++..+     ..|..+-  +..  --.+|-.+.-.|++|-+++. .   
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~V-iD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~  424 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVV-IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH  424 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEE-EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             CceECCCCCEEEEEeCCCCeEEE-EECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence            56899999999888888999999 999999876543     2365322  322  12345423334688999865 3   


Q ss_pred             ----CceeeecCCCCCCCCCcEEEeCCCccEEEEcc--------CCeEEEEeeC
Q psy682          224 ----GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGHIAAFTMN  265 (330)
Q Consensus       224 ----G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~--------~~~~~~~s~n  265 (330)
                          -+.++++.....  ....|.++|||+.|.-..        .+++..|.++
T Consensus       425 ~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          425 PDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             TTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             ccccCEEEEEEecCCC--CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence                467888886533  446689999998775532        3488888865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.41  E-value=8.9e-07  Score=82.64  Aligned_cols=155  Identities=8%  Similarity=-0.003  Sum_probs=87.0

Q ss_pred             EEEeCCCCCCcccCCCCCC-CCCCCCCCccccCCCceeccCCCC-----CCCcceeccCCCCcccee--eeeeEEEEecC
Q psy682           92 INRWNPDYAASIQSPSYAE-TPGSPPGNLPLTLDPILTHPTSNN-----NAPVPKRHLGDNFSQKLR--VRHNCFVTTVD  163 (330)
Q Consensus        92 v~lW~~~~~~~~~~~~h~~-~~~~~~~~l~fs~D~~l~~~s~~~-----~~~~~~~~l~~~~~~~~~--~~~~~~~~spD  163 (330)
                      |.+|+.+++.......... .....++.+.+++||.+..++.+.     ...+++.. .+.+..-..  ...+.++++||
T Consensus       111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPD  189 (326)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTT
T ss_pred             EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCC
Confidence            6777765554332211100 001234568888999854422211     12233332 221111001  12357889999


Q ss_pred             CCeEEEeeccCCeEEEeeecc--cc-cccc-----cccCC---CCcEEE-eHHHHHhhhccCCCcEEEEcccCceeeecC
Q psy682          164 SRFLLACGFWDNSFREPFTTM--YL-ALQE-----GKFDH---PNRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLRSLD  231 (330)
Q Consensus       164 g~~i~asg~~D~tirl~w~~~--~g-~l~~-----~l~gH---~d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~tL~  231 (330)
                      |+.|+.+.+.++.|.+ |+++  +| ++..     .+.+.   .+.+.. +.=.+|- +...++.|.+|+.+|++++++.
T Consensus       190 g~~lyv~~~~~~~I~~-~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv-a~~~~~~v~~~d~~g~~~~~i~  267 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMR-VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN-ARWGEGAVDRYDTDGNHIARYE  267 (326)
T ss_dssp             SCEEEEEETTTCEEEE-EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE-EEETTTEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECCCCEEEE-EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE-EEeCCCEEEEECCCCCEEEEEE
Confidence            9988888777889998 9875  56 4321     11111   111211 1223443 3344678888988999999988


Q ss_pred             CCCCCCCCcEEEeC-CCccEE
Q psy682          232 PPSGFASPESVVMS-REGVIV  251 (330)
Q Consensus       232 ~h~~~~~v~~v~fS-~dG~~l  251 (330)
                      .+..  .|.+++|+ ||+..|
T Consensus       268 ~~~~--~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          268 VPGK--QTTCPAFIGPDASRL  286 (326)
T ss_dssp             CSCS--BEEEEEEESTTSCEE
T ss_pred             CCCC--CcEEEEEecCCCCEE
Confidence            7766  79999998 887755

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.36  E-value=5e-06  Score=77.93  Aligned_cols=147  Identities=10%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             CcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCcee-ccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCC
Q psy682           88 HQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSR  165 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~-~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~  165 (330)
                      .+.+|.+|+++.+.... ..+|.....+   .+.|++|++.. +...++  ....+          ....+.++++|||+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~---~~~~~~~g~~~~~~~~~g--~~~~~----------~~~~~gia~s~dg~  207 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPE---DIDLVIDGVPVQIGQPDG--TVIRP----------HLGVNGIVLDAENE  207 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCC---SCCCEETTEECBEECTTS--CEECC----------CCCEEEEEECTTSC
T ss_pred             CCCeEEEEECCCCCEEEEecCCCccccc---ccceeECCEEEEeccCCC--ceece----------ecccceeEeccCCC
Confidence            67788999987554333 3344321111   25667777632 111111  11001          11346788999999


Q ss_pred             eEEEeeccCCeEEEeeecccccc----------ccc-----ccCCCCcEEEe-HHHHHhhhccCCCcEEEEcc-cCceee
Q psy682          166 FLLACGFWDNSFREPFTTMYLAL----------QEG-----KFDHPNRLFSS-ISLAWKNCQRDTSDVKVHTT-FGDLLR  228 (330)
Q Consensus       166 ~i~asg~~D~tirl~w~~~~g~l----------~~~-----l~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~  228 (330)
                      +|+.+....+  ++ |.++...+          ...     -.++.+-+..+ .=.+|- +.+.++.|.+|+. +|++..
T Consensus       208 ~ly~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v-a~~~~~~V~~~d~~~G~~~~  283 (343)
T 2qe8_A          208 WLYLSPMHST--SM-YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV-GDLAHSAIGVITSADRAYKL  283 (343)
T ss_dssp             EEEEEESSCS--EE-EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE-EEGGGTEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCC--eE-EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE-EccCCCeEEEEECCCCCEEE
Confidence            9888764333  56 66543211          111     12345555332 222333 5666789999998 888644


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      ....+.. ..|..|+|++||+++++.
T Consensus       284 ~~~~~~~-~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          284 LVTDEKL-SWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             EEECGGG-SCEEEEEECTTSCEEEEE
T ss_pred             EEECCce-ecCCeeEECCCCcEEEEe
Confidence            4433211 268999999999988774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.34  E-value=4.9e-06  Score=86.18  Aligned_cols=202  Identities=11%  Similarity=0.004  Sum_probs=111.7

Q ss_pred             ccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eecc
Q psy682           52 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHP  130 (330)
Q Consensus        52 d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~  130 (330)
                      ..+..+.|||||+.|+++..            -.++...+|++|+.++++......+.    .....+.++|| + ++..
T Consensus       163 ~~~~~~~~SPDG~~la~~~~------------~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~  225 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQ------------DGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYS  225 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEE------------ETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEE
T ss_pred             EEEEeEEECCCCCEEEEEEc------------CCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEE
Confidence            35667788888887644411            11222367999999887654432111    11246899999 7 5543


Q ss_pred             CCCCC------------CCcceeccCCCCccceee--------eeeEEEEecCCCeEEEeecc----CCeEEEeeecccc
Q psy682          131 TSNNN------------APVPKRHLGDNFSQKLRV--------RHNCFVTTVDSRFLLACGFW----DNSFREPFTTMYL  186 (330)
Q Consensus       131 s~~~~------------~~~~~~~l~~~~~~~~~~--------~~~~~~~spDg~~i~asg~~----D~tirl~w~~~~g  186 (330)
                      +.+..            ..++.+.++....+...+        ....+.+||||++|+.++..    ...|.+ |+++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~-~d~~~~  304 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHV-ARVTNG  304 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEE-EEEETT
T ss_pred             EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEE-EECCCC
Confidence            33322            124455655433211111        12467799999997766532    237888 998766


Q ss_pred             --cccccccCCCCcEE---Ee---HHHHHhhhccCCCcEEEEcccC--ceeeecCCCCCCCCCcEEEeCCCccEEEEcc-
Q psy682          187 --ALQEGKFDHPNRLF---SS---ISLAWKNCQRDTSDVKVHTTFG--DLLRSLDPPSGFASPESVVMSREGVIVVNYE-  255 (330)
Q Consensus       187 --~l~~~l~gH~d~Vi---aS---t~~lW~~SgS~Dgtvkl~~~~G--~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-  255 (330)
                        +....+..+.+.+.   ..   .+.+....+..++.|.+|+..+  .-.+.|.++.. ..+..++++ ++++++++. 
T Consensus       305 ~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~l~~~~~~-~~~lv~~~~~  382 (741)
T 1yr2_A          305 KIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK-DNLESVGIA-GNRLFASYIH  382 (741)
T ss_dssp             EECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS-SEEEEEEEE-BTEEEEEEEE
T ss_pred             CCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC-CeEEEEEEE-CCEEEEEEEE
Confidence              41445555554431   11   1111000122244577777654  34455544433 157788888 777888874 


Q ss_pred             CCe--EEEEeeCCceeeecc
Q psy682          256 RGH--IAAFTMNGNRLRHES  273 (330)
Q Consensus       256 ~~~--~~~~s~nG~~las~~  273 (330)
                      ++.  |..+..+|+.+..+.
T Consensus       383 dg~~~l~~~~~~g~~~~~l~  402 (741)
T 1yr2_A          383 DAKSQVLAFDLDGKPAGAVS  402 (741)
T ss_dssp             TTEEEEEEEETTSCEEEECB
T ss_pred             CCEEEEEEEeCCCCceeecc
Confidence            554  444455687766654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.25  E-value=1.2e-05  Score=78.05  Aligned_cols=144  Identities=10%  Similarity=0.019  Sum_probs=83.6

Q ss_pred             CCCCCccccC-CCceeccCCCCCCCcceeccCCCCccce-------eeeee---EEEEecCCCeEEEeeccCCeEEEeee
Q psy682          114 SPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKL-------RVRHN---CFVTTVDSRFLLACGFWDNSFREPFT  182 (330)
Q Consensus       114 ~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~-------~~~~~---~~~~spDg~~i~asg~~D~tirl~w~  182 (330)
                      ..+..+++.| |+.+..  ++.+..+.+..........+       ....+   .++|+|++..|+.+-...+.|+. |+
T Consensus       219 ~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~-~~  295 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK-IT  295 (409)
T ss_dssp             SCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE-EC
T ss_pred             CCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE-Ee
Confidence            3567799999 677554  22222333333322111111       00112   78899976677888888899998 98


Q ss_pred             cccccccccccCCC------------------CcE-EEeHHHHHhhhcc-CCCcEEEEc-ccCceeeecCCCCC------
Q psy682          183 TMYLALQEGKFDHP------------------NRL-FSSISLAWKNCQR-DTSDVKVHT-TFGDLLRSLDPPSG------  235 (330)
Q Consensus       183 ~~~g~l~~~l~gH~------------------d~V-iaSt~~lW~~SgS-~Dgtvkl~~-~~G~ll~tL~~h~~------  235 (330)
                      .+ |+ ...+.|+.                  .-+ +.+.=.+|- +-+ .++.|+.++ .+|+ +.++.++.+      
T Consensus       296 ~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv-ad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~  371 (409)
T 3hrp_A          296 PD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI-VDGFKGYCLRKLDILDGY-VSTVAGQVDVASQID  371 (409)
T ss_dssp             TT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE-EETTTTCEEEEEETTTTE-EEEEEECTTCBSCCC
T ss_pred             cC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE-EeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCC
Confidence            85 54 22333332                  112 222111332 556 678899998 5675 556655410      


Q ss_pred             -------CCCCcEEEeCCCccEEEEc-cCCeEEEEee
Q psy682          236 -------FASPESVVMSREGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       236 -------~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~  264 (330)
                             ...|..|+++|||.++++- ..+++..+++
T Consensus       372 g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          372 GTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             BSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                   1268999999999988876 4666666554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.20  E-value=0.00019  Score=63.56  Aligned_cols=227  Identities=12%  Similarity=0.058  Sum_probs=128.7

Q ss_pred             eecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceeccCCcEEEEEcCCcceEEEe
Q psy682           23 FPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTLHMPSVVTVTANHQFAINRW   95 (330)
Q Consensus        23 l~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~~~~~~v~vS~~~~~tv~lW   95 (330)
                      ++.+...+++++++|||++    ..... ...+  ..|.+++++..+..      ...+.+.+++.+-++....+.|..|
T Consensus        10 ~~~~~~~~~~i~~d~~g~l----~v~~~~~~~v--~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~   83 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKV----WITQHKANMI--SCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI   83 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCE----EEEETTTTEE--EEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CCCcCCCccceEECCCCCE----EEEecCCCcE--EEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence            3556678999999999987    32221 1222  22333333332221      1112344455555666667778999


Q ss_pred             CCCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee-----eeeeEEEEecCCCeEE
Q psy682           96 NPDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR-----VRHNCFVTTVDSRFLL  168 (330)
Q Consensus        96 ~~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~i~  168 (330)
                      ++++. ....  +..    ...+..+.+.+|+.+..+... ...+......+.+. .+.     .....+++.+||+. +
T Consensus        84 ~~~g~-~~~~~~~~~----~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~g~~~-~~~~~~~~~~~~~i~~~~~g~l-~  155 (299)
T 2z2n_A           84 TKKGI-IKEYTLPNP----DSAPYGITEGPNGDIWFTEMN-GNRIGRITDDGKIR-EYELPNKGSYPSFITLGSDNAL-W  155 (299)
T ss_dssp             CTTSC-EEEEECSST----TCCEEEEEECTTSCEEEEETT-TTEEEEECTTCCEE-EEECSSTTCCEEEEEECTTSCE-E
T ss_pred             CCCCc-EEEEeCCCc----CCCceeeEECCCCCEEEEecC-CceEEEECCCCCEE-EecCCCCCCCCceEEEcCCCCE-E
Confidence            98643 2221  111    134567888999985442221 22233332211110 010     12357888999976 5


Q ss_pred             EeeccCCeEEEeeeccccccccc-ccCCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCceeee-cCCCCCCCCCcEE
Q psy682          169 ACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDLLRS-LDPPSGFASPESV  242 (330)
Q Consensus       169 asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~ll~t-L~~h~~~~~v~~v  242 (330)
                      .+.+.++.|.. |+. +|++... +..+...+  + . ..=.+|- +...++.|..++.+|+.... +..+..  .+..|
T Consensus       156 v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i  230 (299)
T 2z2n_A          156 FTENQNNAIGR-ITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITTSGEITEFKIPTPNA--RPHAI  230 (299)
T ss_dssp             EEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCCEEEEECSSTTC--CEEEE
T ss_pred             EEeCCCCEEEE-EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECCCCcEEEEECCCCCC--CceeE
Confidence            55656788888 888 6776532 22222222  2 1 1223443 44557788888778876543 333334  79999


Q ss_pred             EeCCCccEEEEc-cCCeEEEEeeCCce
Q psy682          243 VMSREGVIVVNY-ERGHIAAFTMNGNR  268 (330)
Q Consensus       243 ~fS~dG~~l~s~-~~~~~~~~s~nG~~  268 (330)
                      +++++|++.++. ..+.+..|.++|+.
T Consensus       231 ~~~~~g~l~v~~~~~~~i~~~d~~g~~  257 (299)
T 2z2n_A          231 TAGAGIDLWFTEWGANKIGRLTSNNII  257 (299)
T ss_dssp             EECSTTCEEEEETTTTEEEEEETTTEE
T ss_pred             EECCCCCEEEeccCCceEEEECCCCce
Confidence            999999988876 57889999988863

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.19  E-value=1.1e-05  Score=83.26  Aligned_cols=200  Identities=12%  Similarity=0.036  Sum_probs=117.8

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-e
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-L  127 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l  127 (330)
                      ++...+..+.|||||+.|+++.            ..+++...+|++|+.++++.....-..    .....++++ |++ +
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~------------~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l  188 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSL------------SLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGF  188 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEE------------ECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEE
T ss_pred             CCcEEEEEEEECCCCCEEEEEE------------ecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEE
Confidence            3444677888999999875541            123455588999999877643321110    013468899 998 5


Q ss_pred             eccCCCCC-----------CCcceeccCCCCccceee---------eeeEEEEecCCCeEEEeeccC---CeEEEeeecc
Q psy682          128 THPTSNNN-----------APVPKRHLGDNFSQKLRV---------RHNCFVTTVDSRFLLACGFWD---NSFREPFTTM  184 (330)
Q Consensus       128 ~~~s~~~~-----------~~~~~~~l~~~~~~~~~~---------~~~~~~~spDg~~i~asg~~D---~tirl~w~~~  184 (330)
                      +..+.+..           ..++.+.++....+...+         ....+++||||++|+.+...+   +.|.+ ++++
T Consensus       189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~-~d~~  267 (693)
T 3iuj_A          189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV-KDLS  267 (693)
T ss_dssp             EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE-EETT
T ss_pred             EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE-EECC
Confidence            54333321           224556665543221211         123567899999976655432   46788 8886


Q ss_pred             ccc-ccccccCCCCcE---EEe---HHHHHhhhccCC---CcEEEEccc-Cce--eeecCCCCCCCCCcEEEeCCCccEE
Q psy682          185 YLA-LQEGKFDHPNRL---FSS---ISLAWKNCQRDT---SDVKVHTTF-GDL--LRSLDPPSGFASPESVVMSREGVIV  251 (330)
Q Consensus       185 ~g~-l~~~l~gH~d~V---iaS---t~~lW~~SgS~D---gtvkl~~~~-G~l--l~tL~~h~~~~~v~~v~fS~dG~~l  251 (330)
                      +++ ....+..+.+..   +.+   .+.+   ....|   +.|..++.+ |+.  .++|.+|..  .+.  .||++|+.|
T Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~l  340 (693)
T 3iuj_A          268 QENAPLLTVQGDLDADVSLVDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYL  340 (693)
T ss_dssp             STTCCCEEEECSSSSCEEEEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEE
T ss_pred             CCCCceEEEeCCCCceEEEEeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEE
Confidence            653 334555555543   211   1111   22233   456666654 333  467888776  444  999999877


Q ss_pred             EEcc--CC--eEEEEeeCCceeeecc
Q psy682          252 VNYE--RG--HIAAFTMNGNRLRHES  273 (330)
Q Consensus       252 ~s~~--~~--~~~~~s~nG~~las~~  273 (330)
                      +...  ++  .|..|..+|+.+..+.
T Consensus       341 v~~~~~~g~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          341 FAEYMVDATARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred             EEEEEECCeeEEEEEECCCCeeEEee
Confidence            7652  33  6888999998776654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.17  E-value=5.4e-06  Score=76.00  Aligned_cols=186  Identities=8%  Similarity=-0.022  Sum_probs=99.1

Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC--CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eec
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN--HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTH  129 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~--~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~  129 (330)
                      .+..++|||||+.|+....              .+  ....|.+|+.+++.......+.    . +..+.++||++ ++.
T Consensus        60 ~~~~~~~SpDg~~la~~~~--------------~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~  120 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRA--------------NEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLI  120 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEE--------------ETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEE
T ss_pred             cCCCeEECCCCCEEEEEEe--------------ccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEE
Confidence            3566788888887633311              11  2334667777666555443332    1 55789999998 554


Q ss_pred             cCCCC-------------------------CCCcceeccCCCCc-cceee-eeeEEEEecCCCeEEEeeccCC-------
Q psy682          130 PTSNN-------------------------NAPVPKRHLGDNFS-QKLRV-RHNCFVTTVDSRFLLACGFWDN-------  175 (330)
Q Consensus       130 ~s~~~-------------------------~~~~~~~~l~~~~~-~~~~~-~~~~~~~spDg~~i~asg~~D~-------  175 (330)
                      .+...                         ...++.+.+...-. +.+.. ....++++||| +++++ ..+.       
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~-~~~~~~~~~~~  198 (347)
T 2gop_A          121 VGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNV-PHREIIPQYFK  198 (347)
T ss_dssp             EEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEE-ECCCSSCCSSC
T ss_pred             EEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEE-ecccccccccc
Confidence            32210                         11223333321100 11211 23467899999 65554 3442       


Q ss_pred             eEEEeeecccccccccccCCCCcE--EEe--HHHHHhhhccC--------CCcEEEEcccCceeeecCCCCCCCCCcE-E
Q psy682          176 SFREPFTTMYLALQEGKFDHPNRL--FSS--ISLAWKNCQRD--------TSDVKVHTTFGDLLRSLDPPSGFASPES-V  242 (330)
Q Consensus       176 tirl~w~~~~g~l~~~l~gH~d~V--iaS--t~~lW~~SgS~--------Dgtvkl~~~~G~ll~tL~~h~~~~~v~~-v  242 (330)
                      ..+| |..++|++. .+..+ ..+  ++.  ...+   .++.        ...|.+|+ +|+..+.+.+|..  .+.. +
T Consensus       199 ~~~l-~~~d~~~~~-~l~~~-~~~~~~spdg~~l~---~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~--~~~~~~  269 (347)
T 2gop_A          199 FWDI-YIWEDGKEE-KMFEK-VSFYAVDSDGERIL---LYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDR--GVGQAK  269 (347)
T ss_dssp             CEEE-EEEETTEEE-EEEEE-ESEEEEEECSSCEE---EEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCS--EEEEEE
T ss_pred             cccE-EEeCCCceE-EeccC-cceeeECCCCCEEE---EEEccccCCccccceEEEEC-CCceEeccccCCc--ccCCcc
Confidence            5577 766655543 33333 222  211  1111   1221        23566667 7776655556655  7886 9


Q ss_pred             EeCCCccEEEEc-cCCeEEEEeeC-Cceeee
Q psy682          243 VMSREGVIVVNY-ERGHIAAFTMN-GNRLRH  271 (330)
Q Consensus       243 ~fS~dG~~l~s~-~~~~~~~~s~n-G~~las  271 (330)
                      +|| || +++++ .++...+| .+ |+....
T Consensus       270 ~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~  297 (347)
T 2gop_A          270 IKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI  297 (347)
T ss_dssp             EET-TE-EEEEEEETTEEEEE-EESSSEEEE
T ss_pred             EEc-Cc-EEEEEecCCcEEEE-EcCCceEEE
Confidence            999 99 77776 46777777 65 654433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.13  E-value=6.3e-05  Score=66.26  Aligned_cols=176  Identities=10%  Similarity=0.040  Sum_probs=98.5

Q ss_pred             EcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee----eeeeEEE
Q psy682           85 TANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR----VRHNCFV  159 (330)
Q Consensus        85 S~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~----~~~~~~~  159 (330)
                      +...++.|..|+.++....... .+    ...+..+.+.+|+.+..+..  ...+......+.....+.    .....++
T Consensus        41 ~~~~~~~i~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~~~p~~i~  114 (270)
T 1rwi_B           41 SEGMYGRVVKLATGSTGTTVLPFNG----LYQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNYPEGLA  114 (270)
T ss_dssp             ECSSSCEEEEECC-----EECCCCS----CCSCCCEEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCSSEEEEE
T ss_pred             ccCCCCcEEEecCCCcccceEeeCC----cCCcceeEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCcCCCcceE
Confidence            4455667888887654433222 11    13466799999998554222  223333333222111111    1235788


Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccC---CCCcE-EEeHHHHHhhhccCCCcEEEEcccCceeeecC-CCC
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD---HPNRL-FSSISLAWKNCQRDTSDVKVHTTFGDLLRSLD-PPS  234 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g---H~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~-~h~  234 (330)
                      +.+||+. +++...++.|.+ |+..+.+.......   ....+ +...=.+|- +...++.|.+++.+|....... .+.
T Consensus       115 ~~~~g~l-~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (270)
T 1rwi_B          115 VDTQGAV-YVADRGNNRVVK-LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV-TDTDNNRVVKLEAESNNQVVLPFTDI  191 (270)
T ss_dssp             ECTTCCE-EEEEGGGTEEEE-ECTTCCSCEECCCCSCCSCCCEEECTTCCEEE-EEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             ECCCCCE-EEEECCCCEEEE-EECCCceeEeeccccCCCceeEEEeCCCCEEE-EECCCCEEEEEecCCCceEeecccCC
Confidence            9999986 666556888988 86543332211111   11222 222112343 4445678888887765554432 222


Q ss_pred             CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeee
Q psy682          235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRH  271 (330)
Q Consensus       235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las  271 (330)
                      .  .+..|+++++|.+.++. ..+.+..|.++|+....
T Consensus       192 ~--~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~  227 (270)
T 1rwi_B          192 T--APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV  227 (270)
T ss_dssp             C--SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred             C--CceEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence            3  78999999999888876 47789999999875543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.13  E-value=0.00063  Score=60.14  Aligned_cols=240  Identities=14%  Similarity=0.106  Sum_probs=134.8

Q ss_pred             CCCcEEEeecccccccc-eeecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeeec------cceec
Q psy682            5 DKGIVEVWRTFNLALLY-AFPSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTAN------TYVTL   76 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~-tl~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~~------~~~~~   76 (330)
                      .++.|..|+.. |+... .+..+...+.+++++++|++    +.... ...+  .+|.+++.+..+...      ....+
T Consensus        39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l----~v~~~~~~~v--~~~d~~g~~~~~~~~~~~~~~~~i~~  111 (300)
T 2qc5_A           39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDI----WFTENGANKI--GKLSKKGGFTEYPLPQPDSGPYGITE  111 (300)
T ss_dssp             TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEE
T ss_pred             CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCE----EEEecCCCeE--EEECCCCCeEEecCCCCCCCCccceE
Confidence            46788889886 55433 23455578999999999987    33322 2222  234555554322211      11234


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee--
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR--  152 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~--  152 (330)
                      .+++.+-++......|..+++++ .....  +..    ...+..+.+.+|+.+-.+.. ....+.+....+.+.. +.  
T Consensus       112 ~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~----~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~g~~~~-~~~~  184 (300)
T 2qc5_A          112 GLNGDIWFTQLNGDRIGKLTADG-TIYEYDLPNK----GSYPAFITLGSDNALWFTEN-QNNSIGRITNTGKLEE-YPLP  184 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTTS-CEEEEECSST----TCCEEEEEECTTSSEEEEET-TTTEEEEECTTCCEEE-EECS
T ss_pred             CCCCCEEEEccCCCeEEEECCCC-CEEEccCCCC----CCCceeEEECCCCCEEEEec-CCCeEEEECCCCcEEE-eeCC
Confidence            44555556666667789999873 33222  111    13456788889998443222 1222333322211110 11  


Q ss_pred             ---eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc-ccCCCCcE--E--EeHHHHHhhhccCCCcEEEEcccC
Q psy682          153 ---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-KFDHPNRL--F--SSISLAWKNCQRDTSDVKVHTTFG  224 (330)
Q Consensus       153 ---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-l~gH~d~V--i--aSt~~lW~~SgS~Dgtvkl~~~~G  224 (330)
                         .....+++.+||+. +.+....+.|.+ |+. +|+.... +..+...+  +  ...=.+|- +...++.|..++.+|
T Consensus       185 ~~~~~~~~i~~d~~g~l-~v~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          185 TNAAAPVGITSGNDGAL-WFVEIMGNKIGR-ITT-TGEISEYDIPTPNARPHAITAGKNSEIWF-TEWGANQIGRITNDN  260 (300)
T ss_dssp             STTCCEEEEEECTTSSE-EEEETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEECTTS
T ss_pred             CCCCCcceEEECCCCCE-EEEccCCCEEEE-EcC-CCcEEEEECCCCCCCceEEEECCCCCEEE-eccCCCeEEEECCCC
Confidence               12357788999976 555555677888 887 4665432 22222322  2  12223444 444567888888788


Q ss_pred             ceeee-cCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682          225 DLLRS-LDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       225 ~ll~t-L~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                      ++..- +.....  .|.+|+++++|++.++... .+..|.++
T Consensus       261 ~~~~~~~~~~~~--~~~~i~~~~~g~l~v~~~~-~i~~~~p~  299 (300)
T 2qc5_A          261 TIQEYQLQTENA--EPHGITFGKDGSVWFALKC-KIGKLNLN  299 (300)
T ss_dssp             CEEEEECCSTTC--CCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred             cEEEEECCccCC--ccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence            76533 332333  7999999999998888764 77777653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.09  E-value=1.3e-05  Score=75.96  Aligned_cols=38  Identities=5%  Similarity=-0.047  Sum_probs=31.8

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccc--cccccccCC
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYL--ALQEGKFDH  195 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g--~l~~~l~gH  195 (330)
                      ...++|+|||++|+++. + ++|.+ |+.++|  ++++++..+
T Consensus       307 p~~ia~spdg~~l~v~n-~-~~v~v-~D~~t~~l~~~~~i~~~  346 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLD-G-GNVNV-YDISQPEPKLLRTIEGA  346 (361)
T ss_dssp             CCEEEEETTTTEEEEEC-S-SCEEE-EECSSSSCEEEEEETTS
T ss_pred             eeEEEECCCCCEEEEeC-C-CeEEE-EECCCCcceeeEEeccC
Confidence            46889999999988776 4 99999 999999  888776444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.09  E-value=1.3e-05  Score=82.64  Aligned_cols=230  Identities=9%  Similarity=-0.026  Sum_probs=120.8

Q ss_pred             cccCCCcEEEeecccccccceeecCCCce--eEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSV--RSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V--~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +|+++.+|++||+.+|+.+..   +..++  .+++|| ||+.                        +++......   .+
T Consensus       150 ~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~------------------------l~y~~~~~~---~~  198 (693)
T 3iuj_A          150 AGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEG------------------------FFYSSYDKP---DG  198 (693)
T ss_dssp             SSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTE------------------------EEEEESSCC---C-
T ss_pred             CCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCE------------------------EEEEEecCc---cc
Confidence            355567899999988875432   22222  456666 6665                        222221100   00


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCc-----ccCCC-CCCCCCCCCCCccccCCCcee-ccC-CC-CCCCcceeccCCCC--c
Q psy682           80 SVVTVTANHQFAINRWNPDYAAS-----IQSPS-YAETPGSPPGNLPLTLDPILT-HPT-SN-NNAPVPKRHLGDNF--S  148 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~-----~~~~~-h~~~~~~~~~~l~fs~D~~l~-~~s-~~-~~~~~~~~~l~~~~--~  148 (330)
                      +..+ ..++...|++|+......     ..... |.    .....+.+|||+++. ..+ .+ ....++.+.+..+-  .
T Consensus       199 ~~~~-~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          199 SELS-ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGC----CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             cccc-ccCCCcEEEEEECCCCcccceEEEecCCCCC----eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence            0111 123455688888754431     11111 21    123467899999933 222 22 22244555543321  1


Q ss_pred             cceeeee--eEEEEecCCCeEEEeeccC---CeEEEeeecccccc--cccccCCCCcEE--Ee---HHHHHhhhccCCC-
Q psy682          149 QKLRVRH--NCFVTTVDSRFLLACGFWD---NSFREPFTTMYLAL--QEGKFDHPNRLF--SS---ISLAWKNCQRDTS-  215 (330)
Q Consensus       149 ~~~~~~~--~~~~~spDg~~i~asg~~D---~tirl~w~~~~g~l--~~~l~gH~d~Vi--aS---t~~lW~~SgS~Dg-  215 (330)
                      ..+..+.  ....+++||+.|+.....|   ..|.. ++++++..  .+.+..|.+.++  +.   .+.+   +...|| 
T Consensus       274 ~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~-~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~---~~~~~g~  349 (693)
T 3iuj_A          274 LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVT-VDAANPGPAHWRDLIPERQQVLTVHSGSGYLFA---EYMVDAT  349 (693)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE-EETTSCCGGGCEEEECCCSSCEEEEEETTEEEE---EEEETTE
T ss_pred             EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEE-EeCCCCCccccEEEecCCCCEEEEEEECCEEEE---EEEECCe
Confidence            2222222  1223678888777666555   34555 77766544  345666766553  11   1211   334455 


Q ss_pred             -cEEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cC----CeEEEEeeCCceeeec
Q psy682          216 -DVKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ER----GHIAAFTMNGNRLRHE  272 (330)
Q Consensus       216 -tvkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~----~~~~~~s~nG~~las~  272 (330)
                       .|++|+.+|+.++.+.-+.. ..+..++++|||..|+.. +.    ..+..|.+++..+..+
T Consensus       350 ~~l~~~d~~g~~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l  411 (693)
T 3iuj_A          350 ARVEQFDYEGKRVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY  411 (693)
T ss_dssp             EEEEEECTTSCEEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred             eEEEEEECCCCeeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence             56678888888888764332 267788889998866554 33    6788888866544433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.06  E-value=4.4e-05  Score=74.06  Aligned_cols=191  Identities=9%  Similarity=0.022  Sum_probs=110.8

Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccC
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPT  131 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s  131 (330)
                      ....++|++++.+.                 ++......|++|++++..+.+..+..    .... +.+++|+. +.++.
T Consensus       132 ~P~~la~d~~g~ly-----------------v~d~~~~~I~~id~~~g~~~~~~~~~----~~~~-ia~~~~g~~l~~~d  189 (409)
T 3hrp_A          132 YMWGIAAVGNNTVL-----------------AYQRDDPRVRLISVDDNKVTTVHPGF----KGGK-PAVTKDKQRVYSIG  189 (409)
T ss_dssp             CEEEEEECSTTEEE-----------------EEETTTTEEEEEETTTTEEEEEEETC----CBCB-CEECTTSSEEEEEB
T ss_pred             CceEEEEeCCCCEE-----------------EEecCCCcEEEEECCCCEEEEeeccC----CCCc-eeEecCCCcEEEEe
Confidence            45677788888753                 55556678999999877666554322    2234 89999998 33322


Q ss_pred             CCCCCCcceeccCCCCc-cce-------eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccc----ccC---CC
Q psy682          132 SNNNAPVPKRHLGDNFS-QKL-------RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG----KFD---HP  196 (330)
Q Consensus       132 ~~~~~~~~~~~l~~~~~-~~~-------~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~----l~g---H~  196 (330)
                      .++...++.....+.+. ..+       ..+..+++++|++..|+++ ..++.|+. |+.++++....    ..+   ..
T Consensus       190 ~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~-d~~~~I~~-~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV-DSNKNFGR-FNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             SSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE-CTTCEEEE-EETTTCCEEEEEECCCCSCCCCS
T ss_pred             cCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE-ECCCcEEE-EECCCCCEEEEecccccCCCCCC
Confidence            22221233222211111 011       1123578899955566774 46888988 99875543211    111   11


Q ss_pred             ---CcEEEe-HHHHHhhhccCCCcEEEEcccCceeeecCCCC---C----------CCCCcEEEeCCCccEEEEc--cCC
Q psy682          197 ---NRLFSS-ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS---G----------FASPESVVMSREGVIVVNY--ERG  257 (330)
Q Consensus       197 ---d~ViaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~---~----------~~~v~~v~fS~dG~~l~s~--~~~  257 (330)
                         +..+.. --.+|- +-+.++.|+.++.+|+ +.++.++.   +          ...+..|+|+|||++.++-  ..+
T Consensus       268 P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYM-SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             SCCEEEEETTTTEEEE-EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             ccccEEEeCCCCEEEE-EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence               222332 112222 5566788888888887 44454432   0          1258999999999977774  467


Q ss_pred             eEEEEe-eCCcee
Q psy682          258 HIAAFT-MNGNRL  269 (330)
Q Consensus       258 ~~~~~s-~nG~~l  269 (330)
                      .+..|+ .+|+..
T Consensus       346 ~I~~~~~~~G~v~  358 (409)
T 3hrp_A          346 CLRKLDILDGYVS  358 (409)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCEEE
Confidence            899999 778643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.04  E-value=1e-05  Score=75.42  Aligned_cols=172  Identities=8%  Similarity=0.049  Sum_probs=98.2

Q ss_pred             EEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceee--------
Q psy682           84 VTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRV--------  153 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~--------  153 (330)
                      ++...+++|.+|+...... .+.++.     ..+..+.+++|+++-++.. .+..+....+.. ....++..        
T Consensus        58 v~~~~~~~v~viD~~t~~~~~~i~~~-----~~p~~i~~~~~g~lyv~~~-~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           58 IVVNNSHVIFAIDINTFKEVGRITGF-----TSPRYIHFLSDEKAYVTQI-WDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECC-----SSEEEEEEEETTEEEEEEB-SCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EEEcCCCEEEEEECcccEEEEEcCCC-----CCCcEEEEeCCCeEEEEEC-CCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            3344566788888875554 333221     3466788888888443220 122233332211 11111211        


Q ss_pred             eeeEEEEecCCCeEEEeec-cCCeEEEeeecccccccccccCCC--CcE-EEeHHHHHhhhccC----------CCcEEE
Q psy682          154 RHNCFVTTVDSRFLLACGF-WDNSFREPFTTMYLALQEGKFDHP--NRL-FSSISLAWKNCQRD----------TSDVKV  219 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~-~D~tirl~w~~~~g~l~~~l~gH~--d~V-iaSt~~lW~~SgS~----------Dgtvkl  219 (330)
                      ....+++  +++.++++.+ .+++|.+ ++.+++++++.+....  ..+ +...=++|- +...          .++|.+
T Consensus       132 ~p~~i~~--~~~~lyv~~~~~~~~v~v-iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v-~~~~~~~~~~~~~~~~~v~~  207 (328)
T 3dsm_A          132 STEQMVQ--YGKYVYVNCWSYQNRILK-IDTETDKVVDELTIGIQPTSLVMDKYNKMWT-ITDGGYEGSPYGYEAPSLYR  207 (328)
T ss_dssp             BCCCEEE--ETTEEEEEECTTCCEEEE-EETTTTEEEEEEECSSCBCCCEECTTSEEEE-EBCCBCTTCSSCBCCCEEEE
T ss_pred             CcceEEE--ECCEEEEEcCCCCCEEEE-EECCCCeEEEEEEcCCCccceEEcCCCCEEE-EECCCccCCccccCCceEEE
Confidence            2234555  4556687775 4899999 9998888766554221  112 222122333 2222          267888


Q ss_pred             Ecc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCc
Q psy682          220 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       220 ~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~  267 (330)
                      ++. +|++++++.-+.+ ..++.++|+|||+.|..++. .+..|.+...
T Consensus       208 id~~t~~v~~~~~~~~g-~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~  254 (328)
T 3dsm_A          208 IDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWINN-DIWRMPVEAD  254 (328)
T ss_dssp             EETTTTEEEEEEECCTT-CCCEEEEECTTSCEEEEESS-SEEEEETTCS
T ss_pred             EECCCCeEEEEEecCCC-CCceeEEEecCCCEEEEEcc-EEEEEECCCC
Confidence            865 6888888764433 27899999999998876655 7777776543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.91  E-value=7.2e-05  Score=67.23  Aligned_cols=176  Identities=13%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             cCCcceEEEeCCCCCCcccCCC-----CCCCCCCCCCCccccCC-CceeccCCCCCCCcceeccCCCCccc-------ee
Q psy682           86 ANHQFAINRWNPDYAASIQSPS-----YAETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKRHLGDNFSQK-------LR  152 (330)
Q Consensus        86 ~~~~~tv~lW~~~~~~~~~~~~-----h~~~~~~~~~~l~fs~D-~~l~~~s~~~~~~~~~~~l~~~~~~~-------~~  152 (330)
                      ...++.|.+|+++.+.......     +.    ..+..+.+++| +.+..++.+  .++......+.+...       ..
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~----~~~~~i~~~~~~g~l~v~~~~--~~l~~~d~~g~~~~~~~~~~~~~~  115 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYG----GIPAGCQCDRDANQLFVADMR--LGLLVVQTDGTFEEIAKKDSEGRR  115 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEE----CCEEEEEECSSSSEEEEEETT--TEEEEEETTSCEEECCSBCTTSCB
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCC----CCCceEEEecCCCcEEEEECC--CCEEEEeCCCCEEEEEeccCCCcc
Confidence            3445678888865554333211     21    34567888898 874432222  233333322111000       01


Q ss_pred             -eeeeEEEEecCCCeEEEeeccC---------------CeEEEeeeccccccccccc--CCCCcE-EE----eHH-HHHh
Q psy682          153 -VRHNCFVTTVDSRFLLACGFWD---------------NSFREPFTTMYLALQEGKF--DHPNRL-FS----SIS-LAWK  208 (330)
Q Consensus       153 -~~~~~~~~spDg~~i~asg~~D---------------~tirl~w~~~~g~l~~~l~--gH~d~V-ia----St~-~lW~  208 (330)
                       ...+++++.+||++.+++ ..+               +.|.. |+.+ |++.....  .....+ +.    ..- .+|-
T Consensus       116 ~~~~~~i~~d~~g~l~v~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v  192 (314)
T 1pjx_A          116 MQGCNDCAFDYEGNLWITA-PAGEVAPADYTRSMQEKFGSIYC-FTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIV  192 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEE-CBCBCTTSCCCBTTSSSCEEEEE-ECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEE
T ss_pred             ccCCcCEEECCCCCEEEEe-cCcccccccccccccCCCCeEEE-ECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEE
Confidence             123578899999875544 334               34554 5554 55432211  111111 23    210 2232


Q ss_pred             hhccCCCcEEEEcc--cCc-----eeeecCCCC-CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682          209 NCQRDTSDVKVHTT--FGD-----LLRSLDPPS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       209 ~SgS~Dgtvkl~~~--~G~-----ll~tL~~h~-~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~  273 (330)
                       +.+.++.|.+|+.  +|+     .+..+.++. .  .+..+++++||++.++. ..+.+..|.++ |+.+....
T Consensus       193 -~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          193 -AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG--GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             -EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC--EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             -EECCCCeEEEEECCCCCccccceEEEECCCCCCC--CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence             4566788888874  465     344555554 4  68999999999999886 57789999998 88766554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.85  E-value=0.00015  Score=65.59  Aligned_cols=244  Identities=8%  Similarity=-0.017  Sum_probs=136.4

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeee-----ccceecc
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTA-----NTYVTLH   77 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~-----~~~~~~~   77 (330)
                      |+.++.|..|+ .+|+.+..+..+...+.++++.++|.+    +.. ..+   ..+|.+++..+....     ...+.+.
T Consensus        36 ~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l----~v~-t~~---l~~~d~~g~~~~~~~~~~~~~~~~~~~  106 (330)
T 3hxj_A           36 GSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTI----YFG-SDK---VYAINPDGTEKWRFDTKKAIVSDFTIF  106 (330)
T ss_dssp             SSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEE----CCS-SCE---EEEECCCGGGGGGSCC-----CCEEEE
T ss_pred             EcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcE----EEe-cCc---EEEECCCCcEEEEEECCCCcccCceEE
Confidence            45678888899 788888777777778889999888877    222 122   334455554321110     0011222


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceee---e
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV---R  154 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~---~  154 (330)
                      ...+. + ++.++.+..++.++..........    ....++.+.+|+.+..++.+  .++......+........   .
T Consensus       107 ~~~l~-v-~t~~~~l~~~d~~g~~~~~~~~~~----~~~~~~~~~~~g~l~vgt~~--~~l~~~d~~g~~~~~~~~~~~~  178 (330)
T 3hxj_A          107 EDILY-V-TSMDGHLYAINTDGTEKWRFKTKK----AIYATPIVSEDGTIYVGSND--NYLYAINPDGTEKWRFKTNDAI  178 (330)
T ss_dssp             TTEEE-E-ECTTSEEEEECTTSCEEEEEECSS----CCCSCCEECTTSCEEEECTT--SEEEEECTTSCEEEEEECSSCC
T ss_pred             CCEEE-E-EecCCEEEEEcCCCCEEEEEcCCC----ceeeeeEEcCCCEEEEEcCC--CEEEEECCCCCEeEEEecCCCc
Confidence            22333 2 234556888888743332222221    23445666667875543321  222222221111000110   1


Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EEeHHHHHhhhccCCCcEEEEcccCceeeec
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FSSISLAWKNCQRDTSDVKVHTTFGDLLRSL  230 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL  230 (330)
                      ..+.++.++|...+++    +.+.. ++ .+|+.+-........+    +...=.+|  -|+.++.+..++.+|+.+..+
T Consensus       179 ~~~~~~d~~g~l~v~t----~~l~~-~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~--v~t~~~gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS----DKVYA-IN-PDGTEKWNFYAGYWTVTRPAISEDGTIY--VTSLDGHLYAINPDGTEKWRF  250 (330)
T ss_dssp             CSCCEECTTCCEEEES----SSEEE-EC-TTSCEEEEECCSSCCCSCCEECTTSCEE--EEETTTEEEEECTTSCEEEEE
T ss_pred             eeeeEEcCCCEEEEEe----CEEEE-EC-CCCcEEEEEccCCcceeceEECCCCeEE--EEcCCCeEEEECCCCCEeEEe
Confidence            1345566788764433    66666 77 4565543333222222    11111334  355667777777889888877


Q ss_pred             CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682          231 DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       231 ~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~  273 (330)
                      ..+..  .+.++.+.++|.+.+...++.+..|.++|+.+....
T Consensus       251 ~~~~~--~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~  291 (330)
T 3hxj_A          251 KTGKR--IESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFE  291 (330)
T ss_dssp             ECSSC--CCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEE
T ss_pred             eCCCC--ccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEE
Confidence            76554  567788888999998888889999999998876654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.85  E-value=1.9e-05  Score=75.36  Aligned_cols=188  Identities=11%  Similarity=-0.001  Sum_probs=87.6

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +|+.||.|+.||..+|+.+.+++.  +.+.+..+.++|++                                        
T Consensus        14 ~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~----------------------------------------   51 (369)
T 2hz6_A           14 VSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPA----------------------------------------   51 (369)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CC----------------------------------------
T ss_pred             EEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCE----------------------------------------
Confidence            567899999999999999988876  45555545444433                                        


Q ss_pred             EEEEcCCcceEEEeCCC-CCCcccCCCCCCCCCCCCCCc-cccCCCceeccCC-------CCCCCcceeccCCCCcccee
Q psy682           82 VTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNL-PLTLDPILTHPTS-------NNNAPVPKRHLGDNFSQKLR  152 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~-~~~~~~~~~h~~~~~~~~~~l-~fs~D~~l~~~s~-------~~~~~~~~~~l~~~~~~~~~  152 (330)
                       .+.++.++.|..|+.. +..+.....+..   ....+- .+..|+.+.+++.       +..++..+|++..       
T Consensus        52 -~v~~s~dg~l~a~d~~tG~~~w~~~~~~~---~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-------  120 (369)
T 2hz6_A           52 -FLPDPNDGSLYTLGSKNNEGLTKLPFTIP---ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-------  120 (369)
T ss_dssp             -EEECTTTCCEEEC-----CCSEECSCCHH---HHHTTCSCC-----CCCCEEEEEEEEECCC-----------------
T ss_pred             -EEEeCCCCEEEEEECCCCceeeeeeccCc---cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-------
Confidence             2444566667777764 332222221110   000001 1112333322111       1112222222211       


Q ss_pred             eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCcEEEe-H---HHHHhhhccCCCcEEEEcc-cCc
Q psy682          153 VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNRLFSS-I---SLAWKNCQRDTSDVKVHTT-FGD  225 (330)
Q Consensus       153 ~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~ViaS-t---~~lW~~SgS~Dgtvkl~~~-~G~  225 (330)
                       . ....++|++..++++ +.|++|+. |+.++|+++-.+..  +...++.. .   -.++  .++.||.|..|+. +|+
T Consensus       121 -~-~~~~~~p~~~~v~~~-~~dg~v~a-~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~--~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          121 -A-FADSLSPSTSLLYLG-RTEYTITM-YDTKTRELRWNATYFDYAASLPEDDVDYKMSHF--VSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             --------------EEEE-EEEEEEEC-CCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEE--EEETSCEEEEECTTTCC
T ss_pred             -C-CcccccccCCEEEEE-ecCCEEEE-EECCCCCEEEeEecccccCccccCCccccceEE--EECCCCEEEEEECCCCc
Confidence             1 123467788886665 57999999 99988987544321  11111111 0   0011  4678999999976 799


Q ss_pred             eeeecCCCCCCCCCcEEEeCCCccE
Q psy682          226 LLRSLDPPSGFASPESVVMSREGVI  250 (330)
Q Consensus       226 ll~tL~~h~~~~~v~~v~fS~dG~~  250 (330)
                      ++-+.+-...  .+...++++||.+
T Consensus       195 ~~W~~~~~~p--v~~~~~~~~dg~~  217 (369)
T 2hz6_A          195 VLWIQNYASP--VVAFYVWQREGLR  217 (369)
T ss_dssp             EEEEEECSSC--EEEEEECTTSSCE
T ss_pred             EEEEecCCCc--eEEEEEecCCceE
Confidence            9888764322  3456678889875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.79  E-value=8.6e-05  Score=69.41  Aligned_cols=81  Identities=7%  Similarity=-0.114  Sum_probs=53.4

Q ss_pred             eEEEEecCCCeEEEeec---cCCeEEEeeecccccccccccCCCCcE-----EEe-HHHHHhhhccCCCcEEEEcccCce
Q psy682          156 NCFVTTVDSRFLLACGF---WDNSFREPFTTMYLALQEGKFDHPNRL-----FSS-ISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~---~D~tirl~w~~~~g~l~~~l~gH~d~V-----iaS-t~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      +.++++|++..++.+.+   .++.|.+ |+.++|++.+.+.+|....     +.. -..++  +++.||+++.|.     
T Consensus       123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v-~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~--~~~~~g~~~~~~-----  194 (343)
T 2qe8_A          123 NDLAVDLIHNFVYISDPAPDDKAALIR-VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQ--IGQPDGTVIRPH-----  194 (343)
T ss_dssp             CEEEEETTTTEEEEEECCSGGGCEEEE-EETTTCCEEEECTTCTTTSCCSCCCEETTEECB--EECTTSCEECCC-----
T ss_pred             ceEEEecCCCEEEEEcCccCCCCeEEE-EECCCCCEEEEecCCCcccccccceeECCEEEE--eccCCCceecee-----
Confidence            67889987667777776   7899999 9998898877776664311     110 00000  234555554442     


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                              .  .++.|+|||||+.|..+
T Consensus       195 --------~--~~~gia~s~dg~~ly~~  212 (343)
T 2qe8_A          195 --------L--GVNGIVLDAENEWLYLS  212 (343)
T ss_dssp             --------C--CEEEEEECTTSCEEEEE
T ss_pred             --------c--ccceeEeccCCCEEEEE
Confidence                    1  47899999999877765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.77  E-value=0.0033  Score=55.43  Aligned_cols=227  Identities=14%  Similarity=0.088  Sum_probs=126.5

Q ss_pred             ecCCCceeEEEeCCCCCcCcceeeeec-CccEEEEEeCCCCCeeEeee------ccceeccCCcEEEEEcCCcceEEEeC
Q psy682           24 PSCDSSVRSLALSHDQKYSPMMFSTVL-DDVCMSLKFPSNSPICHVTA------NTYVTLHMPSVVTVTANHQFAINRWN   96 (330)
Q Consensus        24 ~gH~~~V~svafSpdg~~~~l~~~~~~-~d~~~~v~Fs~~~~v~~~~~------~~~~~~~~~~~v~vS~~~~~tv~lW~   96 (330)
                      +......++|++++||++    +.... ...+  ..|.+++.+..+..      ...+.+.+++.+-++......|..++
T Consensus        16 ~~~~~~p~~i~~d~~g~l----~v~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKV----WFTQHKANKI--SSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             SSTTCCEEEEEECTTSCE----EEEETTTTEE--EEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCCCCcceeeECCCCCE----EEEcCCCCeE--EEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            455678899999999887    33221 2222  22334444433221      11123444454556666667789999


Q ss_pred             CCCCCcccC--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccce-----eeeeeEEEEecCCCeEEE
Q psy682           97 PDYAASIQS--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL-----RVRHNCFVTTVDSRFLLA  169 (330)
Q Consensus        97 ~~~~~~~~~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~spDg~~i~a  169 (330)
                      +++ .....  +...    ..+..+.+.+|+.+-.+..+ ...+.+....+.+. .+     ......+++.+||+. +.
T Consensus        90 ~~g-~~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~~g~~~-~~~~~~~~~~~~~i~~d~~g~l-~v  161 (300)
T 2qc5_A           90 KKG-GFTEYPLPQPD----SGPYGITEGLNGDIWFTQLN-GDRIGKLTADGTIY-EYDLPNKGSYPAFITLGSDNAL-WF  161 (300)
T ss_dssp             TTS-CEEEEECSSTT----CCEEEEEECSTTCEEEEETT-TTEEEEECTTSCEE-EEECSSTTCCEEEEEECTTSSE-EE
T ss_pred             CCC-CeEEecCCCCC----CCCccceECCCCCEEEEccC-CCeEEEECCCCCEE-EccCCCCCCCceeEEECCCCCE-EE
Confidence            873 33222  1111    34567888889885442221 12233332211111 01     012357888999985 66


Q ss_pred             eeccCCeEEEeeeccccccccccc-CCCCcE--E-E-eHHHHHhhhccCCCcEEEEcccCceeee-cCCCCCCCCCcEEE
Q psy682          170 CGFWDNSFREPFTTMYLALQEGKF-DHPNRL--F-S-SISLAWKNCQRDTSDVKVHTTFGDLLRS-LDPPSGFASPESVV  243 (330)
Q Consensus       170 sg~~D~tirl~w~~~~g~l~~~l~-gH~d~V--i-a-St~~lW~~SgS~Dgtvkl~~~~G~ll~t-L~~h~~~~~v~~v~  243 (330)
                      +.+.++.|.. ++. +|++..... ++...+  + . ..=.+|- +....+.|..++.+|+.... +..+..  .+..|+
T Consensus       162 ~~~~~~~i~~-~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i~  236 (300)
T 2qc5_A          162 TENQNNSIGR-ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITTTGEISEYDIPTPNA--RPHAIT  236 (300)
T ss_dssp             EETTTTEEEE-ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCCEEEEECSSTTC--CEEEEE
T ss_pred             EecCCCeEEE-ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcCCCcEEEEECCCCCC--CceEEE
Confidence            6656778888 887 566543211 122222  1 1 1223443 44455678888778877654 333333  789999


Q ss_pred             eCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682          244 MSREGVIVVNY-ERGHIAAFTMNGNRL  269 (330)
Q Consensus       244 fS~dG~~l~s~-~~~~~~~~s~nG~~l  269 (330)
                      +.++|++.++. ..+.+..|.++|+..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITNDNTIQ  263 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             ECCCCCEEEeccCCCeEEEECCCCcEE
Confidence            99999988776 468899999887644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.74  E-value=0.001  Score=63.71  Aligned_cols=54  Identities=9%  Similarity=0.175  Sum_probs=37.2

Q ss_pred             CcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEeeC-Cceeee
Q psy682          215 SDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRH  271 (330)
Q Consensus       215 gtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s~n-G~~las  271 (330)
                      ++|-+.+. +++.++++... .  .+..++|||||+ .++.+  .++.+..+... ++.+++
T Consensus       298 ~~V~VID~~t~~vv~~i~~g-~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISLG-H--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEEEECCCCEEEEEEECC-C--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            35555544 68888888542 2  589999999999 66665  36788888654 555555

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.67  E-value=9.3e-05  Score=72.25  Aligned_cols=76  Identities=9%  Similarity=-0.009  Sum_probs=53.7

Q ss_pred             EEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhh----hccCCCcEEEEcccCce---eeec------C---
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKN----CQRDTSDVKVHTTFGDL---LRSL------D---  231 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~----SgS~Dgtvkl~~~~G~l---l~tL------~---  231 (330)
                      +++ ..|+++.+ |++.++++.+    +...|   +...|..    .|..||+|++|+.+|..   .+++      .   
T Consensus       140 av~-~~dG~L~v-~dl~~~~~~~----~~~~V---s~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~  210 (388)
T 1xip_A          140 VIL-NSVNDLSA-LDLRTKSTKQ----LAQNV---TSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP  210 (388)
T ss_dssp             EEE-ETTSEEEE-EETTTCCEEE----EEESE---EEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred             EEE-ECCCCEEE-EEccCCcccc----ccCCc---eEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence            444 57999999 9998776653    22222   1111221    68899999999887766   5677      2   


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEc
Q psy682          232 PPSGFASPESVVMSREGVIVVNY  254 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~  254 (330)
                      +|..  .|.+|.+.++++++|++
T Consensus       211 ~~~~--~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          211 VEEY--SPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TTTS--EEEEEEESSSSEEEEEE
T ss_pred             CCCe--eEEEEEEecCCeEEEEE
Confidence            3544  89999999999999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.64  E-value=0.00048  Score=62.71  Aligned_cols=176  Identities=14%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CCCccce--------eee
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQKL--------RVR  154 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~~~~~~--------~~~  154 (330)
                      ++......|++|++++....... .    ...+..+.+++|+.+.++.   ..++...... +.+ +.+        ..+
T Consensus        29 ~~d~~~~~i~~~d~~~~~~~~~~-~----~~~~~~i~~~~dG~l~v~~---~~~l~~~d~~~g~~-~~~~~~~~~~~~~~   99 (297)
T 3g4e_A           29 FVDIPAKKVCRWDSFTKQVQRVT-M----DAPVSSVALRQSGGYVATI---GTKFCALNWKEQSA-VVLATVDNDKKNNR   99 (297)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEE-C----SSCEEEEEEBTTSSEEEEE---TTEEEEEETTTTEE-EEEEECCTTCSSEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEe-C----CCceEEEEECCCCCEEEEE---CCeEEEEECCCCcE-EEEEecCCCCCCCC
Confidence            44455566777777655432221 1    1245678888888855422   2233333321 111 001        122


Q ss_pred             eeEEEEecCCCeEEEeecc--------CCeEEEeeeccc-ccccccccCC---CCcEEEe----HHHHHhhhccCCCcEE
Q psy682          155 HNCFVTTVDSRFLLACGFW--------DNSFREPFTTMY-LALQEGKFDH---PNRLFSS----ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~--------D~tirl~w~~~~-g~l~~~l~gH---~d~ViaS----t~~lW~~SgS~Dgtvk  218 (330)
                      .+.+++.|||++.+++-..        ...-+| |.++. |++.. +..+   ..-+..+    ++.+   +.+.++.|.
T Consensus       100 ~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l-~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv---~~~~~~~i~  174 (297)
T 3g4e_A          100 FNDGKVDPAGRYFAGTMAEETAPAVLERHQGAL-YSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY---IDSLSYSVD  174 (297)
T ss_dssp             EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEE-EEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE---EEGGGTEEE
T ss_pred             CCCEEECCCCCEEEecCCcccccccccCCCcEE-EEEECCCCEEE-EeeccccccceEEcCCCCEEEE---ecCCCCcEE
Confidence            4678899999975544321        133466 66542 33322 1111   1111111    1111   455567788


Q ss_pred             EEcc---cCce-----eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCc
Q psy682          219 VHTT---FGDL-----LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN  275 (330)
Q Consensus       219 l~~~---~G~l-----l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~  275 (330)
                      +++.   +|.+     +..+..+.+  .+..+++.+||.+.++. ..+.+..|+++ |+.+......
T Consensus       175 ~~~~d~~~G~~~~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          175 AFDYDLQTGQISNRRSVYKLEKEEQ--IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEECTTTCCEEEEEEEEECCGGGC--EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             EEeccCCCCcccCcEEEEECCCCCC--CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            7753   4544     334443334  78999999999988886 56789999997 9999887654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.56  E-value=0.00018  Score=70.27  Aligned_cols=137  Identities=9%  Similarity=0.036  Sum_probs=88.2

Q ss_pred             CCCCCccccCCCceeccCCCCCCCcceeccCCC----------Ccc----ceeeeeeEEEEecCCCeEEEeeccCCeEEE
Q psy682          114 SPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----------FSQ----KLRVRHNCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       114 ~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~----------~~~----~~~~~~~~~~~spDg~~i~asg~~D~tirl  179 (330)
                      ..++.|+++++..+..  +++.+++..+.+...          +..    .+.. ...++|  |+++|+++  .++.|++
T Consensus        38 ~~~nlLais~~~gll~--a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~--~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNSKSLFV--AASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS--TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETTTTEEE--EEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE--ESSEEEE
T ss_pred             ccccEEEEcCCCCEEE--EeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE--cCCcEEE
Confidence            3577899999988544  223334433332111          111    1112 356677  99997776  7899999


Q ss_pred             eeecccccccccccCCCCcEEE--e---HHHHHhhhccCCCcEEEEccc-CceeeecCCCCCCCCCcEEEeCCCccEEEE
Q psy682          180 PFTTMYLALQEGKFDHPNRLFS--S---ISLAWKNCQRDTSDVKVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVN  253 (330)
Q Consensus       180 ~w~~~~g~l~~~l~gH~d~Via--S---t~~lW~~SgS~Dgtvkl~~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s  253 (330)
                       |++.+......+..|...|..  .   .+ +   .++.||++.+|+.. |++.. +   ..  .|.++++||+| +++.
T Consensus       111 -~dv~sl~~~~~~~~~~~~v~~i~~~~p~~-a---v~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG-~~vg  178 (388)
T 1xip_A          111 -LDLEELSEFRTVTSFEKPVFQLKNVNNTL-V---ILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQ-LAVL  178 (388)
T ss_dssp             -EESSSTTCEEEEEECSSCEEEEEECSSEE-E---EEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSE-EEEE
T ss_pred             -EEchhhhccCccceeecceeeEEecCCCE-E---EEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCc-eEEE
Confidence             998654433345555555521  1   21 1   57899999999874 66543 3   23  79999999999 4444


Q ss_pred             ccCCeEEEEeeCCcee
Q psy682          254 YERGHIAAFTMNGNRL  269 (330)
Q Consensus       254 ~~~~~~~~~s~nG~~l  269 (330)
                      +.+++++.|+++|..+
T Consensus       179 ~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             ETTSCEEEEEEETTEE
T ss_pred             EcCCcEEEEcCCCccc
Confidence            4689999999999884

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.53  E-value=0.00045  Score=70.36  Aligned_cols=186  Identities=10%  Similarity=0.095  Sum_probs=109.3

Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCCccc-CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CC--Cccceee
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DN--FSQKLRV  153 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~-~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~--~~~~~~~  153 (330)
                      +...+.|+...+++|.+++.+...+.. .+..     ..+..+.||||++++-.+ +.+..+....+. +.  ...++..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEE-cCCCeEEEEECCCCCCcEeEEEec
Confidence            345778888899999999998765443 3221     134579999999943222 222334444432 11  1112221


Q ss_pred             --eeeEEEEe----cCCCeEEEeeccCCeEEEeeecccccccccccC----------CCC-cE---EEe-HHHHHhhhcc
Q psy682          154 --RHNCFVTT----VDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----------HPN-RL---FSS-ISLAWKNCQR  212 (330)
Q Consensus       154 --~~~~~~~s----pDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----------H~d-~V---iaS-t~~lW~~SgS  212 (330)
                        ....++||    |||++++++.++++++.+ ++..++++++++.-          |.. +|   .+| --..|-++-.
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V-iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI-MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE-EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEE-EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence              12578899    799999999999999999 99988887665431          223 23   222 0000111334


Q ss_pred             CCCcEEEEccc-Cc-e-eeecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEe-eCCceeeecc
Q psy682          213 DTSDVKVHTTF-GD-L-LRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFT-MNGNRLRHES  273 (330)
Q Consensus       213 ~Dgtvkl~~~~-G~-l-l~tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s-~nG~~las~~  273 (330)
                      .+|+|.+.+.. .+ + +.++. ...  .+..+.|+|||+.+..+  ..+.+..+. ..|++++...
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~-~~~--~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEIS-AER--FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEE-CCS--SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEecCCCccceeeeee-ccc--cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            56777666542 11 1 22221 112  56788999999987655  466676664 4566555553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.51  E-value=0.00068  Score=61.85  Aligned_cols=181  Identities=16%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcc---ceee----eee
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ---KLRV----RHN  156 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~---~~~~----~~~  156 (330)
                      ++....+.|.+|+.++. ......+.    ..+..+.+.+|+++.++..+ ...+.+....+.+..   ....    ..+
T Consensus        61 ~~d~~~~~i~~~~~~g~-~~~~~~~~----~~~~gl~~d~dG~l~v~~~~-~~~v~~~~~~g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           61 WSDLVGRRVLGWREDGT-VDVLLDAT----AFTNGNAVDAQQRLVHCEHG-RRAITRSDADGQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             EEETTTTEEEEEETTSC-EEEEEESC----SCEEEEEECTTSCEEEEETT-TTEEEEECTTSCEEEEECEETTEECSCCC
T ss_pred             EEECCCCEEEEEeCCCC-EEEEeCCC----CccceeeECCCCCEEEEECC-CCEEEEECCCCCEEEEEeccCCCccCCCC
Confidence            44555566777776433 22222221    23456788888885542221 122222222111100   0000    124


Q ss_pred             EEEEecCCCeEEEe---ecc-------------CCeEEEeeecccccccccc-cCCCCcE-EEe-HHHHHhhhccC----
Q psy682          157 CFVTTVDSRFLLAC---GFW-------------DNSFREPFTTMYLALQEGK-FDHPNRL-FSS-ISLAWKNCQRD----  213 (330)
Q Consensus       157 ~~~~spDg~~i~as---g~~-------------D~tirl~w~~~~g~l~~~l-~gH~d~V-iaS-t~~lW~~SgS~----  213 (330)
                      .+++.|||++.++-   |..             .+.|.. ++.++|++.... ......+ +.. --.||- +.+.    
T Consensus       135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~-~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv-~~~~~~~~  212 (305)
T 3dr2_A          135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYR-LPPDGSPLQRMADLDHPNGLAFSPDEQTLYV-SQTPEQGH  212 (305)
T ss_dssp             CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEE-ECSSSCCCEEEEEESSEEEEEECTTSSEEEE-EECCC---
T ss_pred             CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEE-EcCCCCcEEEEecCCCCcceEEcCCCCEEEE-EecCCcCC
Confidence            68899999874431   321             133444 565556654322 0111111 211 111221 2222    


Q ss_pred             -CCcEEEEcccCcee---eec-CCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCc
Q psy682          214 -TSDVKVHTTFGDLL---RSL-DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       214 -Dgtvkl~~~~G~ll---~tL-~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~  275 (330)
                       ++.|..++..+.-+   +.+ ....+  .+..+++.+||.+.++. .+.+..|+++|+.+......
T Consensus       213 ~~~~i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~  276 (305)
T 3dr2_A          213 GSVEITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTP  276 (305)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECS
T ss_pred             CCCEEEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECC
Confidence             36777776543212   111 11223  67889999999977776 44599999999988877544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.41  E-value=0.0026  Score=58.95  Aligned_cols=180  Identities=11%  Similarity=-0.010  Sum_probs=99.7

Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC-CCCcc------ce-eeee
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQ------KL-RVRH  155 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~-~~~~~------~~-~~~~  155 (330)
                      ++....+.|.+|+++++...... .    ...+.++.+++|+.+..++.   .++...... +.+..      .. ....
T Consensus        65 ~~d~~~~~i~~~d~~~~~~~~~~-~----~~~v~~i~~~~dg~l~v~~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~  136 (326)
T 2ghs_A           65 WFNILERELHELHLASGRKTVHA-L----PFMGSALAKISDSKQLIASD---DGLFLRDTATGVLTLHAELESDLPGNRS  136 (326)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEE-C----SSCEEEEEEEETTEEEEEET---TEEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEE-C----CCcceEEEEeCCCeEEEEEC---CCEEEEECCCCcEEEEeeCCCCCCCCCC
Confidence            44445667888888765443321 1    12466788999998554332   224333321 11100      00 1234


Q ss_pred             eEEEEecCCCeEEEeecc---CCeEEEeeecccccccccccC--CCCcEEEe--HHHHHhhhccCCCcEEEEcc---cC-
Q psy682          156 NCFVTTVDSRFLLACGFW---DNSFREPFTTMYLALQEGKFD--HPNRLFSS--ISLAWKNCQRDTSDVKVHTT---FG-  224 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~---D~tirl~w~~~~g~l~~~l~g--H~d~ViaS--t~~lW~~SgS~Dgtvkl~~~---~G-  224 (330)
                      +.++++|||++.+++...   ....+| |.+++|++.....+  ....+..+  --.+|- +.+.++.|.+++.   +| 
T Consensus       137 ~~i~~d~~G~l~v~~~~~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv-~~~~~~~I~~~d~~~~~Gl  214 (326)
T 2ghs_A          137 NDGRMHPSGALWIGTMGRKAETGAGSI-YHVAKGKVTKLFADISIPNSICFSPDGTTGYF-VDTKVNRLMRVPLDARTGL  214 (326)
T ss_dssp             EEEEECTTSCEEEEEEETTCCTTCEEE-EEEETTEEEEEEEEESSEEEEEECTTSCEEEE-EETTTCEEEEEEBCTTTCC
T ss_pred             CCEEECCCCCEEEEeCCCcCCCCceEE-EEEeCCcEEEeeCCCcccCCeEEcCCCCEEEE-EECCCCEEEEEEcccccCC
Confidence            678899999975544221   134566 65544554322111  11111112  101221 4556788888875   46 


Q ss_pred             ce-----eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682          225 DL-----LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       225 ~l-----l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~  275 (330)
                      ++     +..+.+..+  .+..+++.+||.+.++. +.+.+..|+++|+.+......
T Consensus       215 ~~~~~~~~~~~~~~~~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~  269 (326)
T 2ghs_A          215 PTGKAEVFIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP  269 (326)
T ss_dssp             BSSCCEEEEECTTSSS--EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred             cccCceEEEECCCCCC--CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence            42     334443334  67899999999988876 567899999999988776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.36  E-value=0.0032  Score=61.42  Aligned_cols=110  Identities=10%  Similarity=-0.094  Sum_probs=67.4

Q ss_pred             eEEEEecCCCeEEEeecc-CCeEEEeeecccccccccccCCCCcEEEe-HHHHHhhhccCCCcEEEEcc--cCceeeecC
Q psy682          156 NCFVTTVDSRFLLACGFW-DNSFREPFTTMYLALQEGKFDHPNRLFSS-ISLAWKNCQRDTSDVKVHTT--FGDLLRSLD  231 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~-D~tirl~w~~~~g~l~~~l~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~~--~G~ll~tL~  231 (330)
                      ..++|+|||++++++... +++|.+ +++++++++.++.--.-..+.+ -.+.+- +.+.||++..-+.  .|+...+..
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsV-ID~~t~~vv~tI~v~g~~~~~P~g~~~~~-~~~~DG~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGV-VDLEGKAFKRMLDVPDCYHIFPTAPDTFF-MHCRDGSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEE-EETTTTEEEEEEECCSEEEEEEEETTEEE-EEETTSCEEEEECCSSSCCEEEEC
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEE-EECCCCcEEEEEECCCcceeecCCCceeE-EECCCCCEEEEECCCCCeEEEeec
Confidence            578899999999988754 789999 9999999887773211111222 110000 5677898777655  377654333


Q ss_pred             CCCCC--CCC-cEEEe-CCCccEEEEccCCeEEEEeeCCc
Q psy682          232 PPSGF--ASP-ESVVM-SREGVIVVNYERGHIAAFTMNGN  267 (330)
Q Consensus       232 ~h~~~--~~v-~~v~f-S~dG~~l~s~~~~~~~~~s~nG~  267 (330)
                      .+-..  ..+ ...+| .+||+.+.....+++..+...|.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  257 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence            22110  011 22466 48998765555677777777654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.30  E-value=0.0018  Score=62.43  Aligned_cols=53  Identities=6%  Similarity=0.107  Sum_probs=35.7

Q ss_pred             EEc-ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEee-CCceeeeccC
Q psy682          219 VHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTM-NGNRLRHESH  274 (330)
Q Consensus       219 l~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s~-nG~~las~~~  274 (330)
                      +++ .+++.++++.-+.   .+..|+|+|||+ .+++.  .++.+..+.. .++.+++...
T Consensus       298 ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          298 SVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            554 4788888886532   589999999998 33433  3677777654 5666666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.16  E-value=0.0034  Score=61.23  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=42.5

Q ss_pred             cEEEEc-ccCceeeecCCCCCCCCCcEEEeCCCcc-EEEEc--cCCeEEEEe-eCCceeeeccCccccccc
Q psy682          216 DVKVHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFT-MNGNRLRHESHNDNLQEL  281 (330)
Q Consensus       216 tvkl~~-~~G~ll~tL~~h~~~~~v~~v~fS~dG~-~l~s~--~~~~~~~~s-~nG~~las~~~~~dVkEL  281 (330)
                      +|-+-+ .+++.++++.-.   ..+++|+|||||+ .|...  .++.+..+. ..|+.+++...-..-.+|
T Consensus       312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l  379 (386)
T 3sjl_D          312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV  379 (386)
T ss_dssp             EEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred             EEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCcee
Confidence            455544 478988887642   1688999999997 54443  467777664 488888888755444444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.13  E-value=0.0071  Score=54.39  Aligned_cols=230  Identities=9%  Similarity=0.011  Sum_probs=117.3

Q ss_pred             EEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeec-----cceeccCCcEEE
Q psy682            9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTAN-----TYVTLHMPSVVT   83 (330)
Q Consensus         9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~-----~~~~~~~~~~v~   83 (330)
                      |..++. +|+.+..+..+.....+.++. +|.+    ........+.  +|.+++..+.....     ..+....++.+.
T Consensus        80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l----~v~t~~~~l~--~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~  151 (330)
T 3hxj_A           80 VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDIL----YVTSMDGHLY--AINTDGTEKWRFKTKKAIYATPIVSEDGTIY  151 (330)
T ss_dssp             EEEECC-CGGGGGGSCC-----CCEEEE-TTEE----EEECTTSEEE--EECTTSCEEEEEECSSCCCSCCEECTTSCEE
T ss_pred             EEEECC-CCcEEEEEECCCCcccCceEE-CCEE----EEEecCCEEE--EEcCCCCEEEEEcCCCceeeeeEEcCCCEEE
Confidence            788886 778877776666555555555 7777    2221122221  22233332221110     112233233333


Q ss_pred             EEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCcccee---eeeeEEEE
Q psy682           84 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR---VRHNCFVT  160 (330)
Q Consensus        84 vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~  160 (330)
                      + ++.++.+..++.++..........    ....++.+..|+.+-.++    .++......+...-...   ....++++
T Consensus       152 v-gt~~~~l~~~d~~g~~~~~~~~~~----~~~~~~~~d~~g~l~v~t----~~l~~~d~~g~~~~~~~~~~~~~~~~~~  222 (330)
T 3hxj_A          152 V-GSNDNYLYAINPDGTEKWRFKTND----AITSAASIGKDGTIYFGS----DKVYAINPDGTEKWNFYAGYWTVTRPAI  222 (330)
T ss_dssp             E-ECTTSEEEEECTTSCEEEEEECSS----CCCSCCEECTTCCEEEES----SSEEEECTTSCEEEEECCSSCCCSCCEE
T ss_pred             E-EcCCCEEEEECCCCCEeEEEecCC----CceeeeEEcCCCEEEEEe----CEEEEECCCCcEEEEEccCCcceeceEE
Confidence            3 334567888888733322222111    234456666777754423    22332221111000000   11245667


Q ss_pred             ecCCCeEEEeeccCCeEEEeeecccccccccccCCCC----cEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCC
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN----RLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGF  236 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d----~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~  236 (330)
                      .+||.. +++. .++.+.. ++. +|+.+........    .++..--.+|  -|+.+|.+..++.+|+.+..+.-+.. 
T Consensus       223 ~~~g~l-~v~t-~~~gl~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~--v~t~~ggl~~~d~~g~~~~~~~~~~~-  295 (330)
T 3hxj_A          223 SEDGTI-YVTS-LDGHLYA-INP-DGTEKWRFKTGKRIESSPVIGNTDTIY--FGSYDGHLYAINPDGTEKWNFETGSW-  295 (330)
T ss_dssp             CTTSCE-EEEE-TTTEEEE-ECT-TSCEEEEEECSSCCCSCCEECTTSCEE--EECTTCEEEEECTTSCEEEEEECSSC-
T ss_pred             CCCCeE-EEEc-CCCeEEE-ECC-CCCEeEEeeCCCCccccceEcCCCeEE--EecCCCCEEEECCCCcEEEEEEcCCc-
Confidence            888866 4433 4777776 665 3554333322222    1122222344  36778777777888998887766555 


Q ss_pred             CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682          237 ASPESVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                       .+.++.+.++|++.+...+|.++...
T Consensus       296 -~~~~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          296 -IIATPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             -CCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred             -cccceEEcCCCEEEEEcCCCeEEEEe
Confidence             78899999999999988888776554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.97  E-value=0.025  Score=50.19  Aligned_cols=92  Identities=9%  Similarity=-0.061  Sum_probs=57.4

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcEEEeHHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRLFSSISLAWKNCQRDTSDVKVHTT-FGDLLRSLD  231 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~  231 (330)
                      .+.++++||++.|+.+-...+.|.. ++.+.++....+.  .+.+.+-...-.+|- +....+.|...+. +|+.++++.
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~-~~~~g~~~~~~~~~~~~P~gi~~d~~~lyv-a~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAEC-LNPAQPGRRKVLEGLQYPFAVTSYGKNLYY-TDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE-EETTEEEEEEEEECCCSEEEEEEETTEEEE-EETTTTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEE-EecCCCceEEEecCCCCceEEEEeCCEEEE-EECCCCeEEEEeCCCCCceEEEc
Confidence            4678899999888888878889998 8886443322221  232222111111221 3334567777665 699999987


Q ss_pred             CCCCCCCCcEEEeCCCcc
Q psy682          232 PPSGFASPESVVMSREGV  249 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~  249 (330)
                      .... ..+..|++.||+-
T Consensus       247 ~g~~-~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQ-TRLYGITIALSQC  263 (267)
T ss_dssp             CSSC-CCCCCEEEECSCC
T ss_pred             cccc-cccceeeecCccC
Confidence            5432 2588899998864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.74  E-value=0.018  Score=59.66  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             CCeEEEeeecccccccccccCCCCc---EEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC
Q psy682          174 DNSFREPFTTMYLALQEGKFDHPNR---LFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       174 D~tirl~w~~~~g~l~~~l~gH~d~---ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d  247 (330)
                      +++|+. |++.+|+++-....+...   +++.  -+..   .|+.||.++.|+. +|++|.+++-+.+. .-..++|+.|
T Consensus       454 ~g~l~A-~D~~tG~~~W~~~~~~~~~~g~~~tagglvf---~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIA-WDPVKQQAAWEVPYVTIFNGGTLSTAGNLVF---EGSADGRVIAYAADTGEKLWEQPAASGV-MAAPVTYSVD  528 (689)
T ss_dssp             EEEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred             ceeEEE-EECCCCCeEeEccCCCCccCccceECCCEEE---EECCCCcEEEEECCCCccceeeeCCCCc-ccCceEEEEC
Confidence            578999 999999875544433321   2333  2222   6899999999975 79999998866551 3356888999


Q ss_pred             ccEEEEc--c--------------------CCeEEEEeeCCce
Q psy682          248 GVIVVNY--E--------------------RGHIAAFTMNGNR  268 (330)
Q Consensus       248 G~~l~s~--~--------------------~~~~~~~s~nG~~  268 (330)
                      |+..|..  +                    .+.+..|...|..
T Consensus       529 G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~  571 (689)
T 1yiq_A          529 GEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA  571 (689)
T ss_dssp             TEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred             CEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence            9966553  1                    1368899988865

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.70  E-value=0.015  Score=55.92  Aligned_cols=39  Identities=5%  Similarity=-0.133  Sum_probs=31.7

Q ss_pred             eeeEEEEecCCCeEEEeec-cCCeEEEeeeccccccccccc
Q psy682          154 RHNCFVTTVDSRFLLACGF-WDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       154 ~~~~~~~spDg~~i~asg~-~D~tirl~w~~~~g~l~~~l~  193 (330)
                      ....++|+|||++++.+.. .+++|.+ +++.+++.++++.
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsV-ID~~t~kvv~~I~  354 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDI-YDAASDQDQSSVE  354 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEE-EESSSCEEEEECC
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEE-EECCCCcEEEEEE
Confidence            3568999999997666666 4999999 9999888877664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.38  E-value=0.11  Score=49.28  Aligned_cols=37  Identities=8%  Similarity=-0.042  Sum_probs=30.0

Q ss_pred             eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccc
Q psy682          155 HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGK  192 (330)
Q Consensus       155 ~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l  192 (330)
                      ..+++|+|||+ .++++.+.+++|.+ ++.++++.++++
T Consensus       320 p~~i~~s~Dg~~~l~v~~~~~~~V~V-iD~~t~~vv~~i  357 (373)
T 2mad_H          320 VDAISVAQDGGPDLYALSAGTEVLHI-YDAGAGDQDQST  357 (373)
T ss_pred             cCeEEECCCCCeEEEEEcCCCCeEEE-EECCCCCEEeee
Confidence            36889999999 66776656899999 999988887663

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.35  E-value=0.069  Score=47.20  Aligned_cols=113  Identities=12%  Similarity=-0.034  Sum_probs=63.8

Q ss_pred             eeEEEEecCCCeEEEeecc--CCeEEEeeeccccccccccc----CCCCcE-EEe-HHHHHhhhccCCCcEEEEcccCce
Q psy682          155 HNCFVTTVDSRFLLACGFW--DNSFREPFTTMYLALQEGKF----DHPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDL  226 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~--D~tirl~w~~~~g~l~~~l~----gH~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~l  226 (330)
                      .+.+++.|++..|+.+...  .+.|.. ++.+ |+..+.+.    .+...+ +.. .-.||- +-+..+.|...+.+|..
T Consensus       124 P~~i~vd~~~g~lyv~~~~~~~~~I~~-~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv-~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          124 PRGIVTDPVRGNLYWTDWNRDNPKIET-SHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCW-VDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             EEEEEEETTTTEEEEEECCSSSCEEEE-EETT-SCCCEEEECTTCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTEEE
T ss_pred             ccEEEEeeCCCEEEEEECCCCCcEEEE-EecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEE-EECCCCEEEEEecCCCc
Confidence            3578899987777776643  357776 7774 54333221    122222 221 112221 34455677777777765


Q ss_pred             eeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-Cceeeecc
Q psy682          227 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  273 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~  273 (330)
                      ++.+.....  .+..|++. +|.+.++. ..+.+..+.++ |+.++...
T Consensus       201 ~~~~~~~~~--~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          201 RRKVLEGLQ--YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEEECCC--SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eEEEecCCC--CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            554432222  56778775 44444443 57789889885 77777664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.27  E-value=0.037  Score=50.56  Aligned_cols=110  Identities=14%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccc-----ccccccCCCCcEEE-eHHHHHhhh-c--------cCCCcEEEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLA-----LQEGKFDHPNRLFS-SISLAWKNC-Q--------RDTSDVKVH  220 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~-----l~~~l~gH~d~Via-St~~lW~~S-g--------S~Dgtvkl~  220 (330)
                      +.++++|||++|+.+-+..+.|+. ++++..+     ....+.+ .+-+.. +.=.+|--. +        +..+.|...
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~-~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~  265 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVK-YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF  265 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEE-EESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEE-EECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence            578899999988888777788988 8875321     1111223 333322 111233311 1        113456667


Q ss_pred             cccCceeeecCCCCC--CCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCce
Q psy682          221 TTFGDLLRSLDPPSG--FASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR  268 (330)
Q Consensus       221 ~~~G~ll~tL~~h~~--~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~  268 (330)
                      +.+|++++.+..+.+  ...+..+++ .+|++.++. ..+.|..|.++.+.
T Consensus       266 d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          266 DEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             CTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             CCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence            788999988876543  235778887 578777775 46778777766543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.15  E-value=0.024  Score=55.82  Aligned_cols=42  Identities=7%  Similarity=0.017  Sum_probs=34.6

Q ss_pred             eeEEEEecCCC-eEEEeeccCCeEEEeeecccccccccc--cCCCC
Q psy682          155 HNCFVTTVDSR-FLLACGFWDNSFREPFTTMYLALQEGK--FDHPN  197 (330)
Q Consensus       155 ~~~~~~spDg~-~i~asg~~D~tirl~w~~~~g~l~~~l--~gH~d  197 (330)
                      ...++|+|||+ .++++...+++|-+ +++.+++.++++  .|+.-
T Consensus       372 P~gia~spDg~~~lyv~n~~s~~VsV-ID~~t~kvv~tI~~vG~~P  416 (426)
T 3c75_H          372 IDSINVSQDAEPLLYALSAGTQTLHI-YDAATGEELRSVDQLGRGP  416 (426)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEE-EETTTCCEEEEECCCSSSC
T ss_pred             cCeEEEccCCCEEEEEEcCCCCeEEE-EECCCCCEEEEecCCCCCC
Confidence            46899999999 87887766999999 999999998876  45443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.68  E-value=0.0038  Score=59.21  Aligned_cols=103  Identities=11%  Similarity=-0.092  Sum_probs=43.1

Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCCCC------cEE-EeHHHHHhhhccCCCcEEEEcc-cCceeeecC
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPN------RLF-SSISLAWKNCQRDTSDVKVHTT-FGDLLRSLD  231 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d------~Vi-aSt~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~  231 (330)
                      +.++++. +.+++.|++|+. |+.++|+.+..+..+..      .++ ..-..+   .|+.||+|..|+. +|+.+.++.
T Consensus        45 ~~~~g~~-~v~~s~dg~l~a-~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~---~g~~dg~v~a~D~~tG~~~w~~~  119 (369)
T 2hz6_A           45 THVEEPA-FLPDPNDGSLYT-LGSKNNEGLTKLPFTIPELVQASPCRSSDGILY---MGKKQDIWYVIDLLTGEKQQTLS  119 (369)
T ss_dssp             -----CC-EEECTTTCCEEE-C-----CCSEECSCCHHHHHTTCSCC-----CC---CCEEEEEEEEECCC---------
T ss_pred             eEcCCCE-EEEeCCCCEEEE-EECCCCceeeeeeccCccccccCceEecCCEEE---EEeCCCEEEEEECCCCcEEEEec
Confidence            3456766 444568999999 99988876544433211      112 111112   6788999999976 699998887


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682          232 PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~  273 (330)
                      .+.      .+.++|++..|+.++ ++.++.|.. +|+.+-+..
T Consensus       120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             -------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             CCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            653      245677877777764 678888875 677665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.58  E-value=0.13  Score=53.02  Aligned_cols=88  Identities=9%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             CeEEEeeecccccccccccCCC---CcEEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc
Q psy682          175 NSFREPFTTMYLALQEGKFDHP---NRLFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG  248 (330)
Q Consensus       175 ~tirl~w~~~~g~l~~~l~gH~---d~ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG  248 (330)
                      ++|+. |++.+|+++-......   ...++.  -...   .|+.||++++++. +|+.+.++.-+.+ ..-..+.+++||
T Consensus       457 g~l~A-~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~---~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~~~p~~y~~~G  531 (677)
T 1kb0_A          457 GRLLA-WDPVAQKAAWSVEHVSPWNGGTLTTAGNVVF---QGTADGRLVAYHAATGEKLWEAPTGTG-VVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETT
T ss_pred             cEEEE-EeCCCCcEEeecCCCCCCcCcceEeCCCEEE---EECCCCcEEEEECCCCceeeeeeCCCC-cccCCEEEEeCC
Confidence            67888 9998888644332211   122332  2222   5789999999975 7999999986554 244567788999


Q ss_pred             cEEEEc--c----------------CCeEEEEeeCCc
Q psy682          249 VIVVNY--E----------------RGHIAAFTMNGN  267 (330)
Q Consensus       249 ~~l~s~--~----------------~~~~~~~s~nG~  267 (330)
                      +..+..  +                .+.+..|...++
T Consensus       532 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~  568 (677)
T 1kb0_A          532 RQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK  568 (677)
T ss_dssp             EEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred             EEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence            866543  2                367888887764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.54  E-value=0.58  Score=45.28  Aligned_cols=28  Identities=0%  Similarity=-0.235  Sum_probs=21.1

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      +.++|+|||++|+.+-...+.|.. ++.+
T Consensus       273 ~gia~~pdG~~lyv~d~~~~~I~~-~~~d  300 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQHYILR-SDYD  300 (430)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEE-EEEE
T ss_pred             eeEEEcCCCCEEEEEECCCCEEEE-EeCC
Confidence            568889999877777767777877 6654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.28  E-value=1.6  Score=39.33  Aligned_cols=88  Identities=6%  Similarity=-0.156  Sum_probs=54.7

Q ss_pred             ecCCCeEEEeeccCCeEEEeeeccc-cccc--ccc--cCCCCcEEE-eHHHHHhhhccCCCcEEEEcccCceee--ecCC
Q psy682          161 TVDSRFLLACGFWDNSFREPFTTMY-LALQ--EGK--FDHPNRLFS-SISLAWKNCQRDTSDVKVHTTFGDLLR--SLDP  232 (330)
Q Consensus       161 spDg~~i~asg~~D~tirl~w~~~~-g~l~--~~l--~gH~d~Via-St~~lW~~SgS~Dgtvkl~~~~G~ll~--tL~~  232 (330)
                      +||+++|+.+-+..++|.. ++++. |++-  +.+  ..+.+-+.. +.=.+|- +-...+.|.+++.+|++..  .+..
T Consensus       175 s~dg~~lyv~d~~~~~I~~-~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~~~~G~~~~~~~~~~  252 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLR-IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAPDRSTTIIAQAEQ  252 (306)
T ss_dssp             EEETTEEEEEETTTTEEEE-EEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECTTCCEEEEECGGG
T ss_pred             CcCCCEEEEEeCCCCEEEE-EEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEECCCCCEEEEeeccc
Confidence            8999999999888899988 88763 4431  111  134444422 2112333 3344567888888898743  4443


Q ss_pred             CCCCCCCcEEEeC---CCccEEE
Q psy682          233 PSGFASPESVVMS---REGVIVV  252 (330)
Q Consensus       233 h~~~~~v~~v~fS---~dG~~l~  252 (330)
                      +..  .+.+++|+   |||..|.
T Consensus       253 ~~~--~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          253 GVI--GSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             TCT--TEEEEEECCSTTTTTEEE
T ss_pred             ccC--CceEEEEecccCCCCEEE
Confidence            323  68999999   8866553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.19  E-value=0.046  Score=53.73  Aligned_cols=33  Identities=9%  Similarity=-0.172  Sum_probs=22.1

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCc
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY   41 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~   41 (330)
                      ++|.+.|..+++.+.+++--...  .++|||||+.
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~  131 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSF  131 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCE
Confidence            67777787777777777543333  6667766665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=94.98  E-value=0.23  Score=50.95  Aligned_cols=80  Identities=9%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccccc-ccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPS  234 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~  234 (330)
                      .++++||||+++++++--+.++-+ +++++.+.. .....-.+.|                           +.++..  
T Consensus       280 hGv~~sPDGk~v~V~~~~s~~VsV-id~~~~~~~~~~~l~~~~~v---------------------------~~~v~v--  329 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGKLSPTVTV-LDVTRFDAVFYENADPRSAV---------------------------VAEPEL--  329 (595)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEE-EEGGGHHHHHHSCCCGGGGE---------------------------EECCBC--
T ss_pred             eEEEEcCCCCEEEEeCCCCCeEEE-EECcccccccccccCcccce---------------------------EEEcCC--
Confidence            589999999999999999999999 888744311 0000111111                           112211  


Q ss_pred             CCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          235 GFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       235 ~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                      + ..+.-++|+|||...++- -+..+..|.++.
T Consensus       330 G-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             C-SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             C-CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            1 168999999999433333 477888888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.95  E-value=1.1  Score=42.58  Aligned_cols=113  Identities=7%  Similarity=-0.012  Sum_probs=64.6

Q ss_pred             eEEEEecCCCeEEEeeccC-CeEEEeeeccccccccccc----CCCCcE-EEe-HHHHHhhhccCCCcEEEEcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKF----DHPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~----gH~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                      +.+++.|++.+|+.+-... +.|.. .+.+ |.....+.    ....-+ +.. .-+||- +=+..+.|...+.+|...+
T Consensus       205 ~giavdp~~g~ly~td~~~~~~I~r-~~~d-G~~~~~~~~~~~~~PnGlavd~~~~~lY~-aD~~~~~I~~~d~dG~~~~  281 (386)
T 3v65_B          205 RAIALHPMEGTIYWTDWGNTPRIEA-SSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYW-VDAKHHVIERANLDGSHRK  281 (386)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEE-EETT-SCSCEEEECSSCSCEEEEEEEGGGTEEEE-EETTTTEEEEECTTSCSCE
T ss_pred             cEEEEEcCCCeEEEeccCCCCEEEE-EeCC-CCCcEEEEECCCCCeeeEEEeCCCCEEEE-EECCCCEEEEEeCCCCeeE
Confidence            5788999888878876444 66766 6764 54333322    112222 221 111211 3344567777777776666


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEE-ccCCeEEEEe-eCCceeeecc
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHES  273 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s-~~~~~~~~~s-~nG~~las~~  273 (330)
                      ++.... ...+..|++. ++.+.++ ...+.+..+. .+|+.+..+.
T Consensus       282 ~~~~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          282 AVISQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEECSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEECC-CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            553211 1268899994 4444444 3677888887 6887665553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.89  E-value=2.4  Score=41.02  Aligned_cols=27  Identities=4%  Similarity=-0.189  Sum_probs=20.7

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecc
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~  184 (330)
                      .++|+|||++|+.+-...+.|+. ++.+
T Consensus       277 ~ia~dpdG~~LYvad~~~~~I~~-~~~d  303 (433)
T 4hw6_A          277 HIVWHPTGDWAYIIYNGKHCIYR-VDYN  303 (433)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEE-EEBC
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEE-EeCC
Confidence            58899999877877777778877 6654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.88  E-value=0.58  Score=46.56  Aligned_cols=18  Identities=28%  Similarity=0.414  Sum_probs=15.4

Q ss_pred             CCcEEEeCCCccEEEEcc
Q psy682          238 SPESVVMSREGVIVVNYE  255 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~  255 (330)
                      .+..+++||||+.|..+.
T Consensus       382 gPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          382 APQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEcCCCCEEEEEc
Confidence            489999999999887764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.81  E-value=0.28  Score=45.27  Aligned_cols=94  Identities=9%  Similarity=0.011  Sum_probs=54.3

Q ss_pred             CCCeEEEeeccCCeEEEeeecccccccccccCCC-----CcEEEeHHHHHhhhccCCCcEEEEc-ccCceeeecCCCCCC
Q psy682          163 DSRFLLACGFWDNSFREPFTTMYLALQEGKFDHP-----NRLFSSISLAWKNCQRDTSDVKVHT-TFGDLLRSLDPPSGF  236 (330)
Q Consensus       163 Dg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~-----d~ViaSt~~lW~~SgS~Dgtvkl~~-~~G~ll~tL~~h~~~  236 (330)
                      ++..|+++. .++.+.. ++..+|+.+-......     ..+++.- .+|  .++.+|.+..++ .+|+++...+.+.. 
T Consensus       276 ~~~~l~~~~-~~g~l~~-~d~~tG~~~w~~~~~~~~~~~~~~~~~~-~l~--v~~~~g~l~~~d~~tG~~~~~~~~~~~-  349 (376)
T 3q7m_A          276 DGNRIYLVD-QNDRVMA-LTIDGGVTLWTQSDLLHRLLTSPVLYNG-NLV--VGDSEGYLHWINVEDGRFVAQQKVDSS-  349 (376)
T ss_dssp             ETTEEEEEE-TTCCEEE-EETTTCCEEEEECTTTTSCCCCCEEETT-EEE--EECTTSEEEEEETTTCCEEEEEECCTT-
T ss_pred             ECCEEEEEc-CCCeEEE-EECCCCcEEEeecccCCCcccCCEEECC-EEE--EEeCCCeEEEEECCCCcEEEEEecCCC-
Confidence            344556654 5888888 8988888653332111     1122221 122  477889888886 58999887765333 


Q ss_pred             CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682          237 ASPESVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                       .+.+...-.+|.+++...++.++.|.
T Consensus       350 -~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          350 -GFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -CBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             -cceeCCEEECCEEEEEeCCCEEEEEe
Confidence             22221112366766666677777664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.68  E-value=0.056  Score=53.86  Aligned_cols=37  Identities=5%  Similarity=0.013  Sum_probs=23.8

Q ss_pred             CCCcEEEeecccccccceeecC--CCceeEEEe--CCCCCc
Q psy682            5 DKGIVEVWRTFNLALLYAFPSC--DSSVRSLAL--SHDQKY   41 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH--~~~V~svaf--Spdg~~   41 (330)
                      .+.+|.+|++++++++.++.--  ...-+.|+|  +|||++
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~  266 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLM  266 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCE
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCE
Confidence            4688999999888877776542  123334433  666665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.46  E-value=0.57  Score=48.56  Aligned_cols=116  Identities=12%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             cEEEEEeC-CCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCC-CcccCCCCCCCCCCCCCCccccCCCc-eec
Q psy682           53 VCMSLKFP-SNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPI-LTH  129 (330)
Q Consensus        53 ~~~~v~Fs-~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~-~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~  129 (330)
                      .+...+|| |||+.|+.+..            -+++...+|++++.+++ +...  ..-   ......+.++||++ ++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~------------~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y  237 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVD------------MSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFY  237 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEE------------SSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEe------------CCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEE
Confidence            45677888 88887644411            12334457899998776 4211  110   11234689999997 443


Q ss_pred             cCCCCC---CCcceeccCCCCccceee-------eeeEEEEecCCCeEEEeeccCCe--EEEeeecccc
Q psy682          130 PTSNNN---APVPKRHLGDNFSQKLRV-------RHNCFVTTVDSRFLLACGFWDNS--FREPFTTMYL  186 (330)
Q Consensus       130 ~s~~~~---~~~~~~~l~~~~~~~~~~-------~~~~~~~spDg~~i~asg~~D~t--irl~w~~~~g  186 (330)
                      .+.+..   ..++...++..-.+...+       ....+.+||||++|+.+.....+  |.+ ++++++
T Consensus       238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~-~d~~~~  305 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHL-LDLRKG  305 (751)
T ss_dssp             EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEE-EESSSC
T ss_pred             EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEE-EECCCC
Confidence            222211   124445555432221111       11356789999997766533223  445 555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.45  E-value=0.97  Score=40.79  Aligned_cols=33  Identities=6%  Similarity=0.020  Sum_probs=27.5

Q ss_pred             CCcEEEeCCCccEEEEc-cCCeEEEEeeCCceee
Q psy682          238 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLR  270 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~la  270 (330)
                      .+..+++.+||++.++. ..+.+..|+++|+...
T Consensus       213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~  246 (306)
T 2p4o_A          213 NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI  246 (306)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE
T ss_pred             CCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEE
Confidence            57889999999987776 4788999999998743

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.95  E-value=0.023  Score=58.33  Aligned_cols=69  Identities=7%  Similarity=-0.071  Sum_probs=45.8

Q ss_pred             CCCCccccCCCceeccCCCCCCCcceeccCCC-------Ccc------ceee--eeeEEEEecCCCeEEEeeccCCeEEE
Q psy682          115 PPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-------FSQ------KLRV--RHNCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       115 ~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-------~~~------~~~~--~~~~~~~spDg~~i~asg~~D~tirl  179 (330)
                      .+..+.|||||+++..+...++.+....+...       +..      .++.  ....++|+||| +++++-+-|..|-+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK  356 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence            46679999999966555555555543333211       100      1111  12578899999 78999999999999


Q ss_pred             eeeccc
Q psy682          180 PFTTMY  185 (330)
Q Consensus       180 ~w~~~~  185 (330)
                       |++++
T Consensus       357 -wdi~~  361 (595)
T 1fwx_A          357 -WNIED  361 (595)
T ss_dssp             -EEHHH
T ss_pred             -EEhhH
Confidence             99975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=93.69  E-value=3.3  Score=38.50  Aligned_cols=112  Identities=8%  Similarity=-0.011  Sum_probs=63.8

Q ss_pred             eeEEEEecCCCeEEEeeccC-CeEEEeeecccccccccccC----CCCcE-EEe-HHHHHhhhccCCCcEEEEcccCcee
Q psy682          155 HNCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGKFD----HPNRL-FSS-ISLAWKNCQRDTSDVKVHTTFGDLL  227 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l~g----H~d~V-iaS-t~~lW~~SgS~Dgtvkl~~~~G~ll  227 (330)
                      .+.+++.|++.+|+.+-... +.|.. .+.+ |.....+..    ...-+ +.. .-+||- +=+..+.|...+.+|...
T Consensus       161 P~~iavdp~~g~ly~td~~~~~~I~r-~~~d-G~~~~~~~~~~~~~PnGla~d~~~~~lY~-aD~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          161 PRAIALHPMEGTIYWTDWGNTPRIEA-SSMD-GSGRRIIADTHLFWPNGLTIDYAGRRMYW-VDAKHHVIERANLDGSHR  237 (349)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEE-EETT-SCSCEESCCSSCSCEEEEEEETTTTEEEE-EETTTTEEEEEETTSCSC
T ss_pred             cceEEEecCcCeEEEeccCCCCEEEE-EeCC-CCCcEEEEECCCCCcceEEEeCCCCEEEE-EECCCCEEEEEeCCCCce
Confidence            36788999877878876545 66776 7775 544333321    11222 221 112211 233446677777777766


Q ss_pred             eecCC-CCCCCCCcEEEeCCCccEEEE-ccCCeEEEEe-eCCceeeec
Q psy682          228 RSLDP-PSGFASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE  272 (330)
Q Consensus       228 ~tL~~-h~~~~~v~~v~fS~dG~~l~s-~~~~~~~~~s-~nG~~las~  272 (330)
                      +++.. ...  .+..|++. +|.+.++ ...+.+..+. .+|+.+..+
T Consensus       238 ~~~~~~~~~--~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          238 KAVISQGLP--HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EEEECSSCS--SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEeCCCC--CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            65432 223  68889994 4444444 3677788877 678765544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=93.47  E-value=0.35  Score=43.88  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=29.8

Q ss_pred             CcEEEeCCCccEEEEcc-----------CCeEEEEeeCCceeeeccCc
Q psy682          239 PESVVMSREGVIVVNYE-----------RGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       239 v~~v~fS~dG~~l~s~~-----------~~~~~~~s~nG~~las~~~~  275 (330)
                      +..+++.+||.+.++..           .+.+..|+++|+.+......
T Consensus       231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~  278 (322)
T 2fp8_A          231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP  278 (322)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred             CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence            68899999999888763           35689999999988776543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.83  E-value=0.28  Score=50.95  Aligned_cols=96  Identities=10%  Similarity=0.031  Sum_probs=45.7

Q ss_pred             CCeEEEeeccC--CeEEEeeec--cccccccc-ccCCCCc-EEEe------HHHHHhhhccCCCcEEEE--cc-------
Q psy682          164 SRFLLACGFWD--NSFREPFTT--MYLALQEG-KFDHPNR-LFSS------ISLAWKNCQRDTSDVKVH--TT-------  222 (330)
Q Consensus       164 g~~i~asg~~D--~tirl~w~~--~~g~l~~~-l~gH~d~-ViaS------t~~lW~~SgS~Dgtvkl~--~~-------  222 (330)
                      |+.|+.....|  ...+| |..  +++.-.+. +..|... .+.+      .+.+   +...||..+|+  +.       
T Consensus       330 g~~l~~~t~~~~a~~~~L-~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~---~~~~~g~~~l~~~dl~~~~~~~  405 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKL-LIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVV---AGRRAGLTRIWTMMADSQDGVF  405 (751)
T ss_dssp             TTEEEEEECTTTCTTCEE-EEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEE---EEEETTEEEEEEEECCTTTSCC
T ss_pred             CCEEEEEeCCCCCCCcEE-EEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEE---EEEeCCEEEEEEEecccccccc
Confidence            77666655555  45666 544  32222233 4444433 2221      2222   56677877776  32       


Q ss_pred             cCce-eeecCCCCCCCCCcEEEe------CCCcc-EEEEccC----CeEEEEeeCC
Q psy682          223 FGDL-LRSLDPPSGFASPESVVM------SREGV-IVVNYER----GHIAAFTMNG  266 (330)
Q Consensus       223 ~G~l-l~tL~~h~~~~~v~~v~f------S~dG~-~l~s~~~----~~~~~~s~nG  266 (330)
                      .|.. ++.|.-+.   ....+.|      ++|+. ++++++.    ..+..+.+..
T Consensus       406 ~~g~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~  458 (751)
T 2xe4_A          406 KAGTGLREVVMEE---PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQD  458 (751)
T ss_dssp             CTTTCCEECCCCC---SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTT
T ss_pred             cCCccceEECCCC---ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            3333 55554222   2334455      45665 4444432    3466666543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.49  E-value=2.1  Score=43.76  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             cCCeEEEeeecccccccccccCCC---CcEEEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC
Q psy682          173 WDNSFREPFTTMYLALQEGKFDHP---NRLFSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR  246 (330)
Q Consensus       173 ~D~tirl~w~~~~g~l~~~l~gH~---d~ViaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~  246 (330)
                      +++.|.. |+..+|+..=....+.   ...++.  -+..   .|+.||.++.++. +|+++..++.+.+. .-.-+++..
T Consensus       436 ~~g~l~A-~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf---~g~~dg~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~~~  510 (668)
T 1kv9_A          436 VSGALLA-WDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF---QGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFEL  510 (668)
T ss_dssp             CEEEEEE-EETTTTEEEEEEEESSSCCCCEEEETTTEEE---EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEE
T ss_pred             ccceEEE-EeCCCCcEEEEccCCCCCcCceeEeCCCEEE---EECCcccchhhhhhcChhheEecCCCCc-ccCceEEEE
Confidence            5688998 9998888643222211   112322  1222   5789999999975 79999988776542 224566677


Q ss_pred             CccEEEEc--c--------------------CCeEEEEeeCC
Q psy682          247 EGVIVVNY--E--------------------RGHIAAFTMNG  266 (330)
Q Consensus       247 dG~~l~s~--~--------------------~~~~~~~s~nG  266 (330)
                      ||+..++.  +                    .+.|+.|..+|
T Consensus       511 ~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g  552 (668)
T 1kv9_A          511 AGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG  552 (668)
T ss_dssp             TTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred             CCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence            88854432  1                    24688888888

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=92.23  E-value=6.6  Score=35.71  Aligned_cols=112  Identities=11%  Similarity=0.062  Sum_probs=57.6

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc----CCCCcE-EEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF----DHPNRL-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~----gH~d~V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                      ..+++.+.++.|+.+-...+.|.+ .+++ |+....+.    .+...+ +..  -.+.|.-.+ ..+.|...+.+|...+
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~-~~~~-g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~~~~  156 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSV-ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY  156 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEE-EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEE-EeCC-CCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCCCeE
Confidence            355566655555665555666766 6664 43222221    111111 111  111121011 1144444556676666


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeee
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRH  271 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las  271 (330)
                      .+... ....++.|+++|++..|..+  ..+.|..+..+|.....
T Consensus       157 ~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~  200 (316)
T 1ijq_A          157 SLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  200 (316)
T ss_dssp             EEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE
Confidence            55321 11278899999887766555  36678888888865443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.01  E-value=1.2  Score=45.90  Aligned_cols=87  Identities=16%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc------cCCCCcE-EEeHHHHHhhhccCCCcEEEEc-ccCce
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK------FDHPNRL-FSSISLAWKNCQRDTSDVKVHT-TFGDL  226 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l------~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~-~~G~l  226 (330)
                      .+.++++|+++.|+.+-+..+.|.. ++++ |.-.+.+      .+|.+.| +...-+.|  +....+.|...+ .+|+.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~~~~P~glavd~~~lyw--td~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISS-IDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFW--TDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEE-ECSS-SSCCEEECCCSSSCSSCCCCEEETTEEEE--ECSTTTCEEEEETTTEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEE-EccC-CCceEEEEecCCcCCCceEeEEECCEEEE--EeCCCCeEEEEEccCCCc
Confidence            4678999998888888777888988 8885 4322222      2444444 22222223  334456777765 47998


Q ss_pred             eeecCCCCCCCCCcEEEeCCC
Q psy682          227 LRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       227 l~tL~~h~~~~~v~~v~fS~d  247 (330)
                      +++|..+..  .+..|++..+
T Consensus       618 ~~~i~~~~~--~P~~i~v~~~  636 (699)
T 1n7d_A          618 VNLLAENLL--SPEDMVLFHQ  636 (699)
T ss_dssp             EECCCTTCS--SCCCCCBCSS
T ss_pred             eEEeecCCC--CCcEEEEeCc
Confidence            888865433  5666665544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.14  E-value=6.7  Score=36.09  Aligned_cols=112  Identities=10%  Similarity=0.026  Sum_probs=62.9

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE-EEeH--HHHHhhhccCCCcEEEEcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL-FSSI--SLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V-iaSt--~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                      ..+++.+.+..|+.+-...+.|.+ ++++ |+....+..    ....| +...  .+.|. .-...+.|...+.+|+..+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~-~~~d-G~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEV-SNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWT-DWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSSEEEEEEEGGGTEEEEE-ECSSSCEEEEEETTSCSCE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEE-EECC-CCcEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCCEEEEEEcCCCCeE
Confidence            456677766666776656677877 7775 544333321    11111 2211  11121 1112344555566787766


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeee
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRH  271 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las  271 (330)
                      .+... +...++.|+|+|++..|.-++  .+.|..+..||.....
T Consensus       159 ~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~  202 (318)
T 3sov_A          159 IIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA  202 (318)
T ss_dssp             EEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE
Confidence            65321 113789999999777665553  6788889999865443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=89.77  E-value=2.6  Score=39.86  Aligned_cols=89  Identities=11%  Similarity=0.041  Sum_probs=52.1

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc----cCCCCcEEEe-HHHHHhhhccCCCcEEEEc-ccCceee
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK----FDHPNRLFSS-ISLAWKNCQRDTSDVKVHT-TFGDLLR  228 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l----~gH~d~ViaS-t~~lW~~SgS~Dgtvkl~~-~~G~ll~  228 (330)
                      .+.++++|+++.|+.+=+..+.|+. ++++ |.....+    .+|.+.|-+. --..|  +-...+.|...+ .+|+.++
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~~P~giav~~~~ly~--td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIER-ANLD-GSHRKAVISQGLPHPFAITVFEDSLYW--TDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEE-ECTT-SCSCEEEECSSCSSEEEEEEETTEEEE--EETTTTEEEEEETTTCCSCE
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEE-EeCC-CCeeEEEEECCCCCceEEEEECCEEEE--eeCCCCeEEEEECCCCcceE
Confidence            4678899988888888777788888 8885 4322211    2344444222 11112  333455666555 5788888


Q ss_pred             ecCCCCCCCCCcEEEeC-CCcc
Q psy682          229 SLDPPSGFASPESVVMS-REGV  249 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS-~dG~  249 (330)
                      ++.....  .+..|++- |..|
T Consensus       324 ~i~~~~~--~p~gi~v~~~~~q  343 (386)
T 3v65_B          324 IIRNKLH--FPMDIHTLHPQRQ  343 (386)
T ss_dssp             EEECSCS--CCCCEEEESGGGS
T ss_pred             EEccCCC--CCceEEEEchhcC
Confidence            7765434  56666553 4444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.59  E-value=0.85  Score=41.86  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeecccccccccccC--CCCc------E-EEeHHHHHhhhccCCCcEEE-EcccCcee
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD--HPNR------L-FSSISLAWKNCQRDTSDVKV-HTTFGDLL  227 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g--H~d~------V-iaSt~~lW~~SgS~Dgtvkl-~~~~G~ll  227 (330)
                      ..+++||+.+++|- .++++.+ ++.++.+.+..+.-  +...      + +. .-++|- ....+++|-+ -..+|+.+
T Consensus       110 ~glt~Dg~~l~vs~-gs~~l~v-iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv-n~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          110 WGLATDGKILYGSD-GTSILYE-IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA-NIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             CEEEECSSSEEEEC-SSSEEEE-ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE-EETTSSEEEEEETTTCCEE
T ss_pred             EEEEECCCEEEEEC-CCCeEEE-EECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE-ecCCCCeEEEEECCCCcEE
Confidence            44788999988887 5888998 89887765544431  1000      1 11 113442 1222344444 45589888


Q ss_pred             eecCCC-----------CCCCCCcEEEeCCCccEEEEcc
Q psy682          228 RSLDPP-----------SGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       228 ~tL~~h-----------~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      +++.-.           .....++.|+|+|+|+.+.-++
T Consensus       186 ~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          186 GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            887531           0002678999999997665554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.57  E-value=0.67  Score=42.56  Aligned_cols=113  Identities=6%  Similarity=-0.000  Sum_probs=71.8

Q ss_pred             eEEEEecCCCeEEEee-ccCCeEEEeeeccccccccccc--CCCCcE-EE-eHHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682          156 NCFVTTVDSRFLLACG-FWDNSFREPFTTMYLALQEGKF--DHPNRL-FS-SISLAWKNCQRDTSDVKVHTT-FGDLLRS  229 (330)
Q Consensus       156 ~~~~~spDg~~i~asg-~~D~tirl~w~~~~g~l~~~l~--gH~d~V-ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll~t  229 (330)
                      .-++|++|++..+++| +.+.+|++ .++++|+.++.+.  .+.... ++ .--+||. +.-.+++|-+.+. +++.+++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~-iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv-~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQ-VALQTGKVENIHKMDDSYFGEGLTLLNEKLYQ-VVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEE-EETTTCCEEEEEECCTTCCEEEEEEETTEEEE-EETTCSEEEEEETTTTEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEE-EECCCCCEEEEEecCCCcceEEEEEeCCEEEE-EEecCCEEEEEECCCCcEEEE
Confidence            4567899975544444 34689999 9999999877753  222211 21 1223444 3456888888875 7999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC-ceeeeccC
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHESH  274 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG-~~las~~~  274 (330)
                      +.-..    .....+++||+.|..+ +.+.+..+.+.. +.+++...
T Consensus       102 i~~g~----~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A          102 FTHQM----KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             EECCS----SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EECCC----CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            86321    2345577898755544 567788877655 55566553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.49  E-value=4.1  Score=41.99  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=64.3

Q ss_pred             eEEEEecCCCeEEEeeccC-CeEEEeeecccccccccc----cCCCCcEEEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWD-NSFREPFTTMYLALQEGK----FDHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D-~tirl~w~~~~g~l~~~l----~gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                      ..+++.|++.+|+.+-... +.|.. .+++ |+....+    ......|-.+  .-+||- +-+..+.|...+.+|..++
T Consensus       499 ~giavDp~~g~ly~td~~~~~~I~~-~~~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~-aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          499 RAIVVDPVHGFMYWTDWGTPAKIKK-GGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYW-VDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             CCEECCSSSSCCEECCCSSSCCEEB-CCSS-SCCCCEESCSSCSSCCCEEECTTTCCEEE-EETTTTEEEEECSSSSCCE
T ss_pred             ceEEEccCCCcEEEcccCCCCeEEE-EeCC-CCCeeEEEeCCCCCccEEEEeccCCEEEE-EecCCCeEEEEccCCCceE
Confidence            5678898777777765323 56776 6664 5433322    2233333222  111211 3344567777777787666


Q ss_pred             ecCCCC-CCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeecc
Q psy682          229 SLDPPS-GFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       229 tL~~h~-~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~  273 (330)
                      ++.... ....+..|++-.++.+++....+.|..+.+ +|+.++.+.
T Consensus       576 ~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          576 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            654321 112566777766644444445778888876 688776664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=89.15  E-value=1.2  Score=45.83  Aligned_cols=32  Identities=9%  Similarity=-0.035  Sum_probs=25.3

Q ss_pred             EecCCCeEEEeeccCCeEEEeeeccccccccccc
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~  193 (330)
                      ++.++..++. |..|+.+++ |+..+|+++..+.
T Consensus       484 ~~~~g~~v~~-g~~dg~l~a-~D~~tG~~lw~~~  515 (677)
T 1kb0_A          484 LTTAGNVVFQ-GTADGRLVA-YHAATGEKLWEAP  515 (677)
T ss_dssp             EEETTTEEEE-ECTTSEEEE-EETTTCCEEEEEE
T ss_pred             eEeCCCEEEE-ECCCCcEEE-EECCCCceeeeee
Confidence            5667777666 468999999 9999999876665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=88.99  E-value=1.7  Score=43.44  Aligned_cols=150  Identities=7%  Similarity=-0.024  Sum_probs=76.5

Q ss_pred             ceEEEeCCCCCCcccCCCCCCCCCCCCCCccc-------cCCCc-eeccCCCCCC---C----cceeccCCCCc-----c
Q psy682           90 FAINRWNPDYAASIQSPSYAETPGSPPGNLPL-------TLDPI-LTHPTSNNNA---P----VPKRHLGDNFS-----Q  149 (330)
Q Consensus        90 ~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f-------s~D~~-l~~~s~~~~~---~----~~~~~l~~~~~-----~  149 (330)
                      ..|++.+.+...+.++..-..-..+....+.|       ++|+. |.++...+..   .    ...|.-.+.+.     +
T Consensus       162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~  241 (496)
T 3kya_A          162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ  241 (496)
T ss_dssp             EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred             CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence            44666666555555543221111223567888       99987 5543222211   0    11222111222     1


Q ss_pred             ceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecc-------cccccccccCCCCcEEEeHHHHHhhhccCCCcEEEE
Q psy682          150 KLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTM-------YLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       150 ~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~-------~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~  220 (330)
                      .+..  +.+.+++.|+++.|+.+-+.++.|.. ++++       ++++-...            .-|. +|    ..   
T Consensus       242 ~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r-~d~~~~~~~~~tg~~~tp~------------~~~~-~g----~~---  300 (496)
T 3kya_A          242 LIAAYKQCNGATIHPINGELYFNSYEKGQVFR-LDLVDYFKTIKNGGSWDPI------------VKNN-PN----TF---  300 (496)
T ss_dssp             EEEEESCCCCEEECTTTCCEEEEETTTTEEEE-ECHHHHHHHHHTTCCCCCB------------GGGC-TT----TE---
T ss_pred             eeccCCCceEEEEcCCCCeEEEEECCCCEEEE-EecccccccccCceeeccc------------cccc-cc----cc---
Confidence            2221  23577899977788988888888877 7775       33330000            0000 00    00   


Q ss_pred             cccCceeeecCCCCCCCCCcEEEeCCCccEEEE--ccCCeEEEEeeCCc
Q psy682          221 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNGN  267 (330)
Q Consensus       221 ~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s--~~~~~~~~~s~nG~  267 (330)
                         +++ -++. ...  .++.|+|+|+|.+|.-  ...+.|..++.||.
T Consensus       301 ---~~l-~~~~-~~~--~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          301 ---KQL-FTIA-DPS--WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             ---EEE-EECS-SSS--CCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ---cee-EecC-CCC--CceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence               001 1111 112  6789999999994333  35788988888874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=88.91  E-value=16  Score=34.57  Aligned_cols=224  Identities=12%  Similarity=-0.018  Sum_probs=110.7

Q ss_pred             CcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeee-ecCccEEEEEeCCCC------CeeEeee----cccee
Q psy682            7 GIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFST-VLDDVCMSLKFPSNS------PICHVTA----NTYVT   75 (330)
Q Consensus         7 ~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~-~~~d~~~~v~Fs~~~------~v~~~~~----~~~~~   75 (330)
                      ..|+.-++.. +....+...-..+.+|+|+++++.   .+.. .....|+.+  .+++      ....+..    ...+.
T Consensus        92 ~~I~~i~l~~-~~~~~~~~~~~~~~~l~~d~~~~~---lywsD~~~~~I~~~--~~~g~~~~~~~~~~~~~~~~~p~gla  165 (400)
T 3p5b_L           92 HEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNR---IYWSDLSQRMICST--QLDRAHGVSSYDTVISRDIQAPDGLA  165 (400)
T ss_dssp             TEEEEECTTS-CSCEEEECSCSCEEEEEEETTTTE---EEEEETTTTEEEEE--EC------CCCEEEECSSCSCEEEEE
T ss_pred             ceeEEEccCC-cceeEeccccCcceEEeeeeccCc---eEEEecCCCeEEEE--EcccCCCCCcceEEEeCCCCCcccEE
Confidence            4566666644 333344445567789999985443   1433 333445443  3333      2222221    11133


Q ss_pred             ccC-CcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccC-CCceeccCCCCCCCcceeccCCCCcccee-
Q psy682           76 LHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFSQKLR-  152 (330)
Q Consensus        76 ~~~-~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~-D~~l~~~s~~~~~~~~~~~l~~~~~~~~~-  152 (330)
                      +.. ...+-++......|.+-++++.....+....   ...+..+++.| ++.|..+-.+....+.+-.+.+.....+. 
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~---~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS---SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC---CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            432 3344455555667888888776544433211   23455677776 34433211111122333332222111110 


Q ss_pred             ---eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc------cCCCCcE-EEeHHHHHhhhccCCCcEEEEc-
Q psy682          153 ---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK------FDHPNRL-FSSISLAWKNCQRDTSDVKVHT-  221 (330)
Q Consensus       153 ---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l------~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~-  221 (330)
                         .+.+.+++.++++.|+.+=...+.|+. .+++ |.....+      ..|...| +..--..|  +-...+.|...+ 
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~-~d~d-G~~~~~~~~~~~~l~~P~gl~v~~~~lyw--td~~~~~V~~~~~  318 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISS-IDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFW--TDIINEAIFSANR  318 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEE-EETT-SCCCEEEEECSSTTSSEEEEEEETTEEEE--EESSSCSEEEEES
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEE-EeCC-CCccEEEEeCCCCCCCCEEEEEeCCEEEE--ecCCCCeEEEEEc
Confidence               134678999988888888766788888 8885 4432222      2333333 11111223  234445666554 


Q ss_pred             ccCceeeecCCCCCCCCCcEEEeC
Q psy682          222 TFGDLLRSLDPPSGFASPESVVMS  245 (330)
Q Consensus       222 ~~G~ll~tL~~h~~~~~v~~v~fS  245 (330)
                      .+|+.++++.....  .+..|++-
T Consensus       319 ~~G~~~~~i~~~~~--~p~~i~v~  340 (400)
T 3p5b_L          319 LTGSDVNLLAENLL--SPEDMVLF  340 (400)
T ss_dssp             SSCCCCEEEECSCS--CEEEEEEE
T ss_pred             CCCCceEEEecCCC--CCceEEEE
Confidence            57887777765433  45555443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=87.94  E-value=6.4  Score=36.51  Aligned_cols=90  Identities=8%  Similarity=-0.024  Sum_probs=49.8

Q ss_pred             eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc----cCCCCcEEEeHHHHHhhhccCCCcEEEEc-ccCceeee
Q psy682          155 HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK----FDHPNRLFSSISLAWKNCQRDTSDVKVHT-TFGDLLRS  229 (330)
Q Consensus       155 ~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l----~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~-~~G~ll~t  229 (330)
                      .+.++++|+++.|+.+=+..+.|.. ++.+ |.....+    .+|.+.+-+..-.+|- +-...+.|...+ .+|+.+++
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~-~~~d-G~~~~~~~~~~~~~P~giav~~~~ly~-td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIER-ANLD-GSHRKAVISQGLPHPFAITVFEDSLYW-TDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEE-EETT-SCSCEEEECSSCSSEEEEEEETTEEEE-EETTTTEEEEEETTTCCSCEE
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEE-EeCC-CCceEEEEeCCCCCceEEEEECCEEEE-ecCCCCeEEEEEccCCCccEE
Confidence            4678999988888888777788888 8885 4322221    3344444212111111 223344555444 57777777


Q ss_pred             cCCCCCCCCCcEEEe-CCCcc
Q psy682          230 LDPPSGFASPESVVM-SREGV  249 (330)
Q Consensus       230 L~~h~~~~~v~~v~f-S~dG~  249 (330)
                      +.....  .+..|++ .|..|
T Consensus       282 i~~~~~--~p~gi~v~~~~~q  300 (349)
T 3v64_C          282 IRNKLH--FPMDIHTLHPQRQ  300 (349)
T ss_dssp             EECSCS--CCCCEEEECGGGS
T ss_pred             eccCCC--CCceEEEEccccC
Confidence            764433  4555554 34433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=87.03  E-value=4.5  Score=37.08  Aligned_cols=20  Identities=5%  Similarity=-0.056  Sum_probs=15.3

Q ss_pred             CCcEEEeCCCccEEEEccCC
Q psy682          238 SPESVVMSREGVIVVNYERG  257 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~~~  257 (330)
                      .++.||++|+++.|.-.++.
T Consensus       226 vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCC
Confidence            67899999998877665544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=86.95  E-value=2.5  Score=43.42  Aligned_cols=34  Identities=6%  Similarity=-0.056  Sum_probs=24.6

Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccccccCC
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH  195 (330)
                      ++..+..++. |+.|+.||. |+.++|+++-.+.-.
T Consensus       482 ~~tagglvf~-gt~dg~l~a-~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          482 LSTAGNLVFE-GSADGRVIA-YAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEETTTEEEE-ECTTSEEEE-EETTTCCEEEEEECS
T ss_pred             ceECCCEEEE-ECCCCcEEE-EECCCCccceeeeCC
Confidence            4555656555 568999999 999999987555433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=86.78  E-value=12  Score=39.42  Aligned_cols=113  Identities=11%  Similarity=0.041  Sum_probs=70.4

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccC----CCCcE-EEe--HHHHHhhhccCCCcEEEEcccCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFD----HPNRL-FSS--ISLAWKNCQRDTSDVKVHTTFGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~g----H~d~V-iaS--t~~lW~~SgS~Dgtvkl~~~~G~ll~  228 (330)
                      ..+|+.+.++.|+.+-+..+.|++ .+++ |+...++..    ....| +..  -.+.|.-.| ..+.|..-+.+|..++
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v-~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSV-ADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEE-EETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEE-EeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceE
Confidence            467788888788888878888988 8885 654444432    11112 222  112232112 1245666677888777


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc--CCeEEEEeeCCceeeec
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~--~~~~~~~s~nG~~las~  272 (330)
                      +|....- ..++.|++.+++..|..++  .+.|..+.+||..+..+
T Consensus       551 ~lv~~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          551 SLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             EEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             EEEeCCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            7654221 3789999998766665553  66799999999866554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=86.34  E-value=1.5  Score=40.32  Aligned_cols=109  Identities=8%  Similarity=-0.100  Sum_probs=70.6

Q ss_pred             EEEEecCCCeEEEeeccCC--eEEEeeecccccccccccCCCCcE---EE-eHHHHHhhhccCCCcEEEEcc-cCceeee
Q psy682          157 CFVTTVDSRFLLACGFWDN--SFREPFTTMYLALQEGKFDHPNRL---FS-SISLAWKNCQRDTSDVKVHTT-FGDLLRS  229 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~--tirl~w~~~~g~l~~~l~gH~d~V---ia-St~~lW~~SgS~Dgtvkl~~~-~G~ll~t  229 (330)
                      -+.|+ |+. |+.|...++  +|+. +++++|++++.+.-.....   ++ .--++|. ..-.++++.+++. +++++++
T Consensus        47 GL~~~-~~~-LyestG~~g~S~v~~-vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~-ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           47 GFFYR-NGY-FYESTGLNGRSSIRK-VDIESGKTLQQIELGKRYFGEGISDWKDKIVG-LTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEE-TTE-EEEEEEETTEEEEEE-ECTTTCCEEEEEECCTTCCEEEEEEETTEEEE-EESSSSEEEEEETTTCCEEEE
T ss_pred             eEEEE-CCE-EEEECCCCCCceEEE-EECCCCcEEEEEecCCccceeEEEEeCCEEEE-EEeeCCEEEEEECccCcEEEE
Confidence            45577 664 455555554  8999 9999999877664333211   11 1223444 2345788888875 7999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccC
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESH  274 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~  274 (330)
                      +.-..     ....+++||+.|+.. +.+.+..+.+. .+.+++...
T Consensus       123 i~~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          123 FNYDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EECSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EECCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            87532     334556788766665 46778888776 677777664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=86.07  E-value=20  Score=32.55  Aligned_cols=15  Identities=0%  Similarity=-0.223  Sum_probs=7.6

Q ss_pred             cCCeEEEeeecccccc
Q psy682          173 WDNSFREPFTTMYLAL  188 (330)
Q Consensus       173 ~D~tirl~w~~~~g~l  188 (330)
                      .++.+.. ++.++|++
T Consensus       196 ~~g~l~~-~d~~tG~~  210 (376)
T 3q7m_A          196 DNGRVSA-VLMEQGQM  210 (376)
T ss_dssp             TTTEEEE-EETTTCCE
T ss_pred             CCCEEEE-EECCCCcE
Confidence            3555555 55555544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=85.84  E-value=0.76  Score=42.49  Aligned_cols=111  Identities=6%  Similarity=-0.156  Sum_probs=71.4

Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE--EEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCC
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL--FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDP  232 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V--iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~  232 (330)
                      -+.|+  ++.|+.|...++.|+. +++++|+.++.+.+-.-.-  ++- --+||. ..-.++.+.+++. ++++++++.-
T Consensus        59 GL~~~--~~~Ly~stG~~g~v~~-iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~-ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           59 GLVFH--QGHFFESTGHQGTLRQ-LSLESAQPVWMERLGNIFAEGLASDGERLYQ-LTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEE-CCSSCSSCSEEEECTTCCEEEEEECSSCEEE-EESSSCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEE--CCEEEEEcCCCCEEEE-EECCCCcEEeEECCCCcceeEEEEeCCEEEE-EEccCCEEEEEECCcCcEEEEEeC
Confidence            34454  4566777778888999 9999999887762221110  111 223444 3446788888875 7999999985


Q ss_pred             CCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC-CceeeeccCcc
Q psy682          233 PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHND  276 (330)
Q Consensus       233 h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n-G~~las~~~~~  276 (330)
                      . +    ....+++||+.|+.. +.+.++.+.+. ++.+++.....
T Consensus       135 ~-~----eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~  175 (268)
T 3nok_A          135 S-G----EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL  175 (268)
T ss_dssp             S-S----CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             C-C----ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence            3 2    234455788876655 47778887654 57777766543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=81.74  E-value=44  Score=33.19  Aligned_cols=35  Identities=11%  Similarity=0.059  Sum_probs=25.5

Q ss_pred             CCcEEEeCCC-ccEEEEc-cCCeEEEEeeCCceeeec
Q psy682          238 SPESVVMSRE-GVIVVNY-ERGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       238 ~v~~v~fS~d-G~~l~s~-~~~~~~~~s~nG~~las~  272 (330)
                      .+..|++.++ |.+.|+- ...+|+.++++|..-...
T Consensus       445 ~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          445 DVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             CCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence            6889999997 8877664 578899999988755443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=81.18  E-value=9  Score=36.76  Aligned_cols=111  Identities=7%  Similarity=-0.125  Sum_probs=59.0

Q ss_pred             eEEEEecCCCeEEEeeccCCeE--EEeeeccccccc--ccc--cCCCCcEEEe--HHHHHhhhccCCCcEEEEcccCcee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSF--REPFTTMYLALQ--EGK--FDHPNRLFSS--ISLAWKNCQRDTSDVKVHTTFGDLL  227 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~ti--rl~w~~~~g~l~--~~l--~gH~d~ViaS--t~~lW~~SgS~Dgtvkl~~~~G~ll  227 (330)
                      ..+++++||++|+++.+..+.+  ++-|-...|++.  ..+  ..|..-|.+.  .=.+|- +-..++.|..++.+|..+
T Consensus       182 ~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~  260 (430)
T 3tc9_A          182 RTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQET  260 (430)
T ss_dssp             EEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEE
T ss_pred             ceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcE
Confidence            5788999999888887643322  220222345443  111  2333333221  111111 222345566666655544


Q ss_pred             eecCCCCCCCCCcEEEeCCCccE-EEEc-cCCeEEEEeeCCc
Q psy682          228 RSLDPPSGFASPESVVMSREGVI-VVNY-ERGHIAAFTMNGN  267 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~-l~s~-~~~~~~~~s~nG~  267 (330)
                      ..+........++.|+|+|+|+. .++- ..+.+..|..||.
T Consensus       261 ~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~  302 (430)
T 3tc9_A          261 TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK  302 (430)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence            22211111126899999999994 3433 5788999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1t77a1	304	a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons	2e-14

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 280 ELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPWASSPEQFVRINRM 330
           ELIPE ++LPEM VN N Y LG  +D   +++VELPPWA + E+FV INR+
Sbjct: 174 ELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.87
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.8
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.78
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.74
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.73
d1t77a1	304	Lipopolysaccharide-responsive and beige-like ancho	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.56
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.53
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.42
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.21
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.18
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.14
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.12
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.99
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.67
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.39
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	87.47

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.8e-29  Score=220.36  Aligned_cols=232  Identities=13%  Similarity=0.122  Sum_probs=176.1

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSN   62 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~   62 (330)
                      ||||.||+||||++.+|+++.+|++|...|++++|+|++..                  .......++...+..+.|+|+
T Consensus        33 ~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          33 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             EEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            58999999999999999999999999999999999999987                  111123467778888999999


Q ss_pred             CCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcce
Q psy682           63 SPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPK  140 (330)
Q Consensus        63 ~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~  140 (330)
                      ++.+                 ++++.|+.+++|+..... ...+.+|.    ....++.|++|+. +++++.++..  ..
T Consensus       113 ~~~~-----------------~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~v--~~  169 (317)
T d1vyhc1         113 GDHI-----------------VSASRDKTIKMWEVQTGYCVKTFTGHR----EWVRMVRPNQDGTLIASCSNDQTV--RV  169 (317)
T ss_dssp             SSEE-----------------EEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSEEEEEETTSCE--EE
T ss_pred             CceE-----------------EeeccCcceeEeecccceeeeEEccCC----CcceeeecccCCCEEEEEeCCCeE--EE
Confidence            8874                 778889999999987554 44445776    3567899999999 5543333332  22


Q ss_pred             eccCC-CCccceeee---eeEEEEecC--------------------CCeEEEeeccCCeEEEeeecccccccccccCCC
Q psy682          141 RHLGD-NFSQKLRVR---HNCFVTTVD--------------------SRFLLACGFWDNSFREPFTTMYLALQEGKFDHP  196 (330)
Q Consensus       141 ~~l~~-~~~~~~~~~---~~~~~~spD--------------------g~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~  196 (330)
                      +.+.. .....+..+   ..+++++|+                    +++ +.+|+.|++|++ |++.+++++.++.+|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~-~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF-LLSGSRDKTIKM-WDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE-EEEEETTSEEEE-EETTTTEEEEEEECCS
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCce-eEeccCCCEEEE-EECCCCcEEEEEeCCC
Confidence            22211 011111111   124444444                    445 566778999999 9999999999999999


Q ss_pred             CcEE--E-e---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          197 NRLF--S-S---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       197 d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                      ..|.  + +   ...+   +|+.||+|+||+. +|+++++|.+|.+  .|.+|+|||||+.||+++ |++|++|
T Consensus       248 ~~v~~~~~~~~~~~l~---s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFIL---SCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             SCEEEEEECSSSSCEE---EEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCEEEEEECCCCCEEE---EEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            9882  2 2   3344   8999999999976 7999999999999  999999999999999985 7889888

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=3.1e-25  Score=204.70  Aligned_cols=221  Identities=11%  Similarity=0.079  Sum_probs=170.2

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTV   84 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~v   84 (330)
                      .++.|.+|++++++..+.|.+|.+.|.+++|||||++                                         +|
T Consensus        36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~-----------------------------------------la   74 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY-----------------------------------------CA   74 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSE-----------------------------------------EE
T ss_pred             eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCe-----------------------------------------Ee
Confidence            3567999999999999999999999999999999888                                         48


Q ss_pred             EcCCcceEEEeCCCCCCc---ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCC--cceeccCCCCccceeeee---
Q psy682           85 TANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP--VPKRHLGDNFSQKLRVRH---  155 (330)
Q Consensus        85 S~~~~~tv~lW~~~~~~~---~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~--~~~~~l~~~~~~~~~~~~---  155 (330)
                      +++.|++|++|+......   ....+|.    .++.++.|+||++ +++++.+....  ++.+..+. ...++..|.   
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~v  149 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAM  149 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSS----SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCE
T ss_pred             ccccCceEeeeeeecccccccccccccc----Ccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            889999999999876542   3345787    4677899999999 55433333222  23333222 223444443   


Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E-e---HHHHHhhhccCCCcEEEEcc-cCceee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVHTT-FGDLLR  228 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~  228 (330)
                      .+++|+||+++++++|+.|++|++ |+..++++...+.+|...|.  + +   ...+   +|+.||+|++|+. +++.+.
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~~i~i-~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~---~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDNTVAI-FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA---STGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEE-EETTTBEEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccceeeeccccccccccc-ccccccccccccccccccccccccCccccccc---cccccccccccccccccccc
Confidence            578899999998888889999999 99999999999999999872  1 1   3333   8999999999975 677776


Q ss_pred             ecC-------CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe-eCCceeeeccCccc
Q psy682          229 SLD-------PPSGFASPESVVMSREGVIVVNYE-RGHIAAFT-MNGNRLRHESHNDN  277 (330)
Q Consensus       229 tL~-------~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s-~nG~~las~~~~~d  277 (330)
                      +++       +|.+  .|.+++|||||+.||+++ |+.+++|. .+|+++.++..+..
T Consensus       226 ~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         226 VFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             ECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccccc--cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence            664       5667  899999999999999996 78899997 46777777765543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1e-25  Score=210.84  Aligned_cols=213  Identities=12%  Similarity=0.051  Sum_probs=157.1

Q ss_pred             CcccCCCcEEEeeccccc--ccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLA--LLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~--~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.||+|+||++.+++  ++.+|+||.+.|++|+|||||++                                     
T Consensus        23 a~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~-------------------------------------   65 (371)
T d1k8kc_          23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-------------------------------------   65 (371)
T ss_dssp             EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-------------------------------------
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCE-------------------------------------
Confidence            578999999999998765  67789999999999999999887                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc------
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS------  148 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~------  148 (330)
                          ++|++.|++|++|+.+...   .....+|.    ..+.++.|+||+. +++++.++...++.........      
T Consensus        66 ----l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          66 ----IVTCGTDRNAYVWTLKGRTWKPTLVILRIN----RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             ----EEEEETTSCEEEEEEETTEEEEEEECCCCS----SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             ----EEEEECCCeEEEEeeccccccccccccccc----ccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence                4777889999999987554   23345675    3677899999999 6654444433333333221110      


Q ss_pred             cceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccc------------------ccccccCCCCcEE----Ee--HH
Q psy682          149 QKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA------------------LQEGKFDHPNRLF----SS--IS  204 (330)
Q Consensus       149 ~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~------------------l~~~l~gH~d~Vi----aS--t~  204 (330)
                      +.......+++|+|||++ +++|+.|+++|+ |+...+.                  ++....+|...|.    .+  ..
T Consensus       138 ~~~~~~v~~v~~~p~~~~-l~s~s~D~~v~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVL-LAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             TTCCSCEEEEEECTTSSE-EEEEETTSCEEE-EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccccccccccccccccc-eeccccCcEEEE-EeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            001112358899999998 566778999999 9975432                  3445567777662    12  22


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeC
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  265 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~n  265 (330)
                      .+   +|+.||+|++|+. +|+.+.++.+|..  +|.+|+|+|||++||+|.++.++.|..+
T Consensus       216 l~---s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g~d~~~~~~~~~  272 (371)
T d1k8kc_         216 VA---WVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYD  272 (371)
T ss_dssp             EE---EEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred             cc---ccccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEEcCCceEEEEee
Confidence            33   8999999999975 7999999999988  9999999999999999988876666544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=3.7e-25  Score=197.83  Aligned_cols=215  Identities=14%  Similarity=0.136  Sum_probs=157.3

Q ss_pred             CcccCCCcEEEeeccccccccee-ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      |||+.||+||+||+.+|+.++++ .+|...|++++|+|||++                                      
T Consensus        28 ~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--------------------------------------   69 (299)
T d1nr0a2          28 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL--------------------------------------   69 (299)
T ss_dssp             EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE--------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee--------------------------------------
Confidence            58999999999999999999888 579999999999999877                                      


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEE
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  159 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~  159 (330)
                          ++++.|.++++|+..+........+.......+..+.|++|+.+++.+.+  ..+..+...............+++
T Consensus        70 ----~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~  143 (299)
T d1nr0a2          70 ----FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY--KHIAIYSHGKLTEVPISYNSSCVA  143 (299)
T ss_dssp             ----EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES--SEEEEEETTEEEEEECSSCEEEEE
T ss_pred             ----ecccceeeEEEeccCCcccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence                44456788999998776655544443333456778999999996653322  223333322111111112236889


Q ss_pred             EecCCCeEEEeeccCCeEEEeeecccccccc-cccCCCCcEE--E-e---HHHHHhhhccCCCcEEEEcc-cCcee---e
Q psy682          160 TTVDSRFLLACGFWDNSFREPFTTMYLALQE-GKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVHTT-FGDLL---R  228 (330)
Q Consensus       160 ~spDg~~i~asg~~D~tirl~w~~~~g~l~~-~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~-~G~ll---~  228 (330)
                      ++||+++ +++|+.|+.|++ |+++++++.. ....|.+.|.  + +   ...+   +|+.||+|++|+. +++.+   +
T Consensus       144 ~s~~~~~-l~~g~~dg~i~~-~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~d~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         144 LSNDKQF-VAVGGQDSKVHV-YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV---ATDQSRKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             ECTTSCE-EEEEETTSEEEE-EEEETTEEEEEEEEECSSCEEEEEECTTSSEEE---EEETTSCEEEEEGGGTTEESCCC
T ss_pred             ccccccc-cccccccccccc-ccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc
Confidence            9999998 556778999999 9998776544 4557888772  2 2   2233   8999999999975 45544   5


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      .+.+|..  .|++++|+|+|+.||+++ ++.+++|.++.
T Consensus       219 ~~~~h~~--~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         219 SWTFHTA--KVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             CCCCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccc--ccccccccccccceEEEcCCCEEEEEECCC
Confidence            6777888  999999999999999985 78999998663

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.1e-25  Score=196.27  Aligned_cols=212  Identities=11%  Similarity=0.119  Sum_probs=150.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      |||+.||+|++|++.+++.+.++++|...|.+++|+|+|++                                       
T Consensus        71 ~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~---------------------------------------  111 (340)
T d1tbga_          71 VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY---------------------------------------  111 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSE---------------------------------------
T ss_pred             EEEECCCceeeeecccceeEEEEecccccEEeeEeecccee---------------------------------------
Confidence            68999999999999999999999999999999999999887                                       


Q ss_pred             EEEEEcCCcceEEEeCCCCCCc-----ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCc-cceee-
Q psy682           81 VVTVTANHQFAINRWNPDYAAS-----IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-QKLRV-  153 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~-----~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~-~~~~~-  153 (330)
                        +++++.++++++|+......     ....+|..    .........+..+.....+.  ............ ..... 
T Consensus       112 --l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         112 --VACGGLDNICSIYNLKTREGNVRVSRELAGHTG----YLSCCRFLDDNQIVTSSGDT--TCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             --EEEEETTCCEEEEESSSSCSCCCEEEEECCCSS----CEEEEEEEETTEEEEEETTT--EEEEEETTTTEEEEEEECC
T ss_pred             --eeeecccceeecccccccccccccceecccccc----cccccccccccccccccccc--ccccccccccccccccccc
Confidence              46777788888888754331     12234432    12222223333332211111  111111110000 00000 


Q ss_pred             --eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------EEe-----HHHHHhh------
Q psy682          154 --RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------FSS-----ISLAWKN------  209 (330)
Q Consensus       154 --~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------iaS-----t~~lW~~------  209 (330)
                        ...+..+.+++++ +++|+.|++|++ |++.+++++.++.+|.+.|           +++     ++++|+.      
T Consensus       184 ~~~~~~~~~~~~~~~-~~~~~~d~~v~i-~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         184 TGDVMSLSLAPDTRL-FVSGACDASAKL-WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             SSCEEEEEECTTSSE-EEEEETTTEEEE-EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEeeeccccccce-eEEeecCceEEE-EECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc
Confidence              1135667788877 556678999999 9999999999999998877           222     6777776      


Q ss_pred             -------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEE
Q psy682          210 -------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  262 (330)
Q Consensus       210 -------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~  262 (330)
                                               +|+.||+|+||+. +|+++.+|.+|.+  .|++|+|||||+.||+|+ |+++++|
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCCEEEEe
Confidence                                     8999999999975 7999999999999  999999999999999985 7899998


Q ss_pred             e
Q psy682          263 T  263 (330)
Q Consensus       263 s  263 (330)
                      +
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-24  Score=192.46  Aligned_cols=252  Identities=11%  Similarity=0.083  Sum_probs=156.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCCCCCeeEeeec------cc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPSNSPICHVTAN------TY   73 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~~~~v~~~~~~------~~   73 (330)
                      |||+.||+|||||+.+++++.+|++|.+.|++|+|+|++.+     .++..| .+....+............      ..
T Consensus        27 ~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l-----~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          27 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-----VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEE-----EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEE-----EEEecccccccccccccccccccccccccccccc
Confidence            68999999999999999999999999999999999997644     333333 3333332222211111110      00


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCC-------C-----------CCCCccccCCCceeccCCCCC
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPG-------S-----------PPGNLPLTLDPILTHPTSNNN  135 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~-------~-----------~~~~l~fs~D~~l~~~s~~~~  135 (330)
                      ....++....++++.|++|++|+..........+......       .           ......+.+|+.+... +..+
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~d  180 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS-GSYD  180 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE-EETT
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee-eccc
Confidence            1234556667889999999999986544222111110000       0           0001123445552221 1112


Q ss_pred             CCcceeccCCC-Ccccee---eeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe
Q psy682          136 APVPKRHLGDN-FSQKLR---VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS  202 (330)
Q Consensus       136 ~~~~~~~l~~~-~~~~~~---~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS  202 (330)
                      ..+..+.+... ......   ....+..++|+++++ ++++.|++||+ |+.++++++..+.+|...|         +++
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~i-~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~  258 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRI-WDLENGELMYTLQGHTALVGLLRLSDKFLVS  258 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEE-EETTTCCEEEEECCCSSCCCEEEECSSEEEE
T ss_pred             ceeeeeecccccceeeeeccccccccccccccceee-ecccccceEEe-eeccccccccccccccccccccccccceeee
Confidence            22223332110 000111   112467799999985 45668999999 9999999999999999887         232


Q ss_pred             -----HHHHHhh---------------------------hccCCCcEEEEcc-cCceee-ecCCCCCCCCCcEEEeCCCc
Q psy682          203 -----ISLAWKN---------------------------CQRDTSDVKVHTT-FGDLLR-SLDPPSGFASPESVVMSREG  248 (330)
Q Consensus       203 -----t~~lW~~---------------------------SgS~Dgtvkl~~~-~G~ll~-tL~~h~~~~~v~~v~fS~dG  248 (330)
                           ++++|+.                           +++.||+|+||+. +|++++ .+.+|.+  .|.+|+|+|+.
T Consensus       259 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~--~V~~v~~~~~~  336 (355)
T d1nexb2         259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD--QIWSVNFKGKT  336 (355)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCS--EEEEEEEETTE
T ss_pred             eecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCC--CEEEEEEcCCe
Confidence                 7888877                           4445999999985 799996 5788988  99999999985


Q ss_pred             cEEEEc-cCCeEEEEe
Q psy682          249 VIVVNY-ERGHIAAFT  263 (330)
Q Consensus       249 ~~l~s~-~~~~~~~~s  263 (330)
                       +++++ .++++.+|-
T Consensus       337 -~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         337 -LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             -EEEEEESSSCEEEEE
T ss_pred             -EEEEEECCCcEEEEE
Confidence             45555 477766654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-24  Score=197.86  Aligned_cols=231  Identities=16%  Similarity=0.126  Sum_probs=160.3

Q ss_pred             CcccCCCcEEEeecccccccc-----eeecCCCceeEEEeCCCCCc-------Cc-------------ceeeeecCccEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLY-----AFPSCDSSVRSLALSHDQKY-------SP-------------MMFSTVLDDVCM   55 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~-----tl~gH~~~V~svafSpdg~~-------~~-------------l~~~~~~~d~~~   55 (330)
                      |||+ ||.|+|||+.++....     .+.+|.+.|++|+|||||++       ..             ......|...+.
T Consensus        67 atg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  145 (337)
T d1gxra_          67 YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             EEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred             EEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc
Confidence            4676 8999999997654322     24689999999999999987       00             011224444455


Q ss_pred             EEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCC
Q psy682           56 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN  133 (330)
Q Consensus        56 ~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~  133 (330)
                      .+.|+|++.+                 .++++.+++|++|+..... .....+|.    +.+.++.|++|+. ++.++.+
T Consensus       146 ~~~~~~~~~~-----------------l~s~~~d~~i~~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         146 ALAISPDSKV-----------------CFSCCSDGNIAVWDLHNQTLVRQFQGHT----DGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             EEEECTTSSE-----------------EEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccc-----------------cccccccccccccccccccccccccccc----ccccccccccccccccccccc
Confidence            5555555554                 5888889999999987655 33444776    4677899999998 5443333


Q ss_pred             CCCCcceeccCCC-Cccce--eeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE----Ee--HH
Q psy682          134 NNAPVPKRHLGDN-FSQKL--RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF----SS--IS  204 (330)
Q Consensus       134 ~~~~~~~~~l~~~-~~~~~--~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi----aS--t~  204 (330)
                      +  .+..+.+... ..+.+  .....+++++|+++++ ++|+.|+.+++ |++.+++.. ...+|.+.|.    ..  ..
T Consensus       205 ~--~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~d~~i~i-~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~  279 (337)
T d1gxra_         205 N--TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL-AVGMESSNVEV-LHVNKPDKY-QLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             S--EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE-EEEETTSCEEE-EETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred             c--cccccccccceeecccccccceEEEEEccccccc-ceecccccccc-ccccccccc-cccccccccceEEECCCCCE
Confidence            3  2333333211 00111  1112578899999995 55668999999 999877765 5678988882    12  22


Q ss_pred             HHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee
Q psy682          205 LAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       205 ~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~  264 (330)
                      .+   +||.||+|++|+. +|+.+.++. |.+  .|.+++|||||+.||+++ |++++.|.+
T Consensus       280 l~---s~s~Dg~i~iwd~~~~~~~~~~~-~~~--~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         280 FV---STGKDNLLNAWRTPYGASIFQSK-ESS--SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE---EEETTSEEEEEETTTCCEEEEEE-CSS--CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE---EEeCCCeEEEEECCCCCEEEEcc-CCC--CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            33   8999999999965 799998876 456  799999999999999985 788999963

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=190.36  Aligned_cols=247  Identities=14%  Similarity=0.161  Sum_probs=140.9

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEee-eccc----ee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVT-ANTY----VT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~-~~~~----~~   75 (330)
                      ||||.||+|||||+.+|+++.+|.+|.+.|++++|+|+  +    +.++..|....+--.......... ....    ..
T Consensus        31 ~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~----l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (342)
T d2ovrb2          31 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--I----IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  104 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--E----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--c----cccceecccccccccccccceecccccceeEeeee
Confidence            68999999999999999999999999999999999985  2    333333332222111111111000 0000    01


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCC-ceeccCCCCCCCcceeccCCCCccceeee
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP-ILTHPTSNNNAPVPKRHLGDNFSQKLRVR  154 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~-~l~~~s~~~~~~~~~~~l~~~~~~~~~~~  154 (330)
                      ....  ..+.+..+.++++|+...........+.     .........+. .++.++.++...++...... ....+..+
T Consensus       105 ~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~  176 (342)
T d2ovrb2         105 LHEK--RVVSGSRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGH  176 (342)
T ss_dssp             EETT--EEEEEETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCC
T ss_pred             cccc--cccccccceeEEEeecccccceeeeecc-----cccceeeccccceeeeecCCCeEEEeecccce-eeEEEcCc
Confidence            1111  2244455666777776544322221111     01111111222 23322222221111111111 01112222


Q ss_pred             e-eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHHhh----------
Q psy682          155 H-NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAWKN----------  209 (330)
Q Consensus       155 ~-~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW~~----------  209 (330)
                      . ....+++|+++ +++|+.|++|++ |++..+++++.+.+|...|         +++     ++++|+.          
T Consensus       177 ~~~~~~~~~~~~~-l~s~~~dg~i~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         177 TNRVYSLQFDGIH-VVSGSLDTSIRV-WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             SSCEEEEEECSSE-EEEEETTSCEEE-EETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccccCCCCE-EEEEeCCCeEEE-eecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccccccccc
Confidence            2 24445667766 344556777777 7777777777777777666         222     5666655          


Q ss_pred             --------------------hccCCCcEEEEcc-cCceeeecC-----CCCCCCCCcEEEeCCCccEEEEcc-CC----e
Q psy682          210 --------------------CQRDTSDVKVHTT-FGDLLRSLD-----PPSGFASPESVVMSREGVIVVNYE-RG----H  258 (330)
Q Consensus       210 --------------------SgS~Dgtvkl~~~-~G~ll~tL~-----~h~~~~~v~~v~fS~dG~~l~s~~-~~----~  258 (330)
                                          +||.||+|+||+. +|+++++|.     +|.+  .|++|+|||+|.+||+|+ +|    .
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~--~v~~v~~s~~~~~la~g~~dGt~~~~  332 (342)
T d2ovrb2         255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVCAVGSRNGTEETK  332 (342)
T ss_dssp             STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred             ccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC--CEEEEEECCCCCEEEEEeCCCCCeeE
Confidence                                9999999999975 799999885     4555  799999999999999985 44    3


Q ss_pred             EEEEeeC
Q psy682          259 IAAFTMN  265 (330)
Q Consensus       259 ~~~~s~n  265 (330)
                      +..|..|
T Consensus       333 l~~~Df~  339 (342)
T d2ovrb2         333 LLVLDFD  339 (342)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            7777654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1e-23  Score=184.47  Aligned_cols=244  Identities=9%  Similarity=0.078  Sum_probs=176.5

Q ss_pred             EEeecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeec
Q psy682           10 EVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTAN   71 (330)
Q Consensus        10 ~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~   71 (330)
                      |.|.. ..++..+|+||.+.|++|+|||||++                  ..+..+.+|.+.|..+.|+|++..+     
T Consensus         1 k~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-----   74 (317)
T d1vyhc1           1 KEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL-----   74 (317)
T ss_dssp             CCCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE-----
T ss_pred             CccCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccc-----
Confidence            46854 55777899999999999999999987                  2233345677788888888888864     


Q ss_pred             cceeccCCcEEEEEcCCcceEEEeCCCCCCc-ccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCc
Q psy682           72 TYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFS  148 (330)
Q Consensus        72 ~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~  148 (330)
                                  +++..+.++..|+...... ....+|.    ....++.+++|+. +++++.++..  ..+.+.. ...
T Consensus        75 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~  136 (317)
T d1vyhc1          75 ------------ASCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNGDHIVSASRDKTI--KMWEVQTGYCV  136 (317)
T ss_dssp             ------------EEEETTSCCCEEETTSSCEEECCCCCS----SCEEEEEECSSSSEEEEEETTSEE--EEEETTTCCEE
T ss_pred             ------------ccccccccccccccccccccccccccc----ccceeeeccCCCceEEeeccCcce--eEeecccceee
Confidence                        6667777788888765543 3334665    3566789999998 5543333322  2333221 112


Q ss_pred             cceeeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEE--E--e--------------HHHHH
Q psy682          149 QKLRVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLF--S--S--------------ISLAW  207 (330)
Q Consensus       149 ~~~~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Vi--a--S--------------t~~lW  207 (330)
                      ..+..+.   .+++++||+++ +++|+.|+++++ |+..+++....+.+|...+.  .  .              .....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (317)
T d1vyhc1         137 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRV-WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  214 (317)
T ss_dssp             EEEECCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             eEEccCCCcceeeecccCCCE-EEEEeCCCeEEE-EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec
Confidence            2333332   57889999998 555668999999 99999999999999999872  1  1              00000


Q ss_pred             -----hhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCc-ccc
Q psy682          208 -----KNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHN-DNL  278 (330)
Q Consensus       208 -----~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~-~dV  278 (330)
                           -.+|+.||+|++|+. +|++++++.+|.+  .|.+++|+|+|+.||+++ ++.+++|.. +|+.++++..| +.|
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             cCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence                 018999999999975 7999999999999  999999999999999985 889999986 67888887654 344


Q ss_pred             ccc
Q psy682          279 QEL  281 (330)
Q Consensus       279 kEL  281 (330)
                      ..|
T Consensus       293 ~~~  295 (317)
T d1vyhc1         293 TSL  295 (317)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.6e-24  Score=196.24  Aligned_cols=233  Identities=15%  Similarity=0.113  Sum_probs=155.4

Q ss_pred             CcccCCCcEEEeecccccccceee------------------cCCCceeEEEeCCCCCc------------------Ccc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP------------------SCDSSVRSLALSHDQKY------------------SPM   44 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~------------------gH~~~V~svafSpdg~~------------------~~l   44 (330)
                      |+|+ |++|+||++.+|+++.++.                  +|...|++|+|||||++                  ..+
T Consensus        78 asg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~  156 (388)
T d1erja_          78 ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV  156 (388)
T ss_dssp             EEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccc
Confidence            4665 8999999999998877764                  56777999999999987                  111


Q ss_pred             eeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCc-cccC
Q psy682           45 MFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNL-PLTL  123 (330)
Q Consensus        45 ~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l-~fs~  123 (330)
                      ....+|.+.|..+.|++++..                 .++++.++.|++|+...........+..    ...++ .+.+
T Consensus       157 ~~~~~h~~~v~~~~~~~~~~~-----------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~  215 (388)
T d1erja_         157 MILQGHEQDIYSLDYFPSGDK-----------------LVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTTVAVSPG  215 (388)
T ss_dssp             EEECCCSSCEEEEEECTTSSE-----------------EEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEECST
T ss_pred             ccccccccccccccccccccc-----------------ccccccceeeeeeecccccccccccccc----ccccccccCC
Confidence            223356667777777777765                 3777788889999997665444433321    22233 3455


Q ss_pred             CCc-eeccCCCCCCCcceeccCC--CC------ccceeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccc---
Q psy682          124 DPI-LTHPTSNNNAPVPKRHLGD--NF------SQKLRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL---  188 (330)
Q Consensus       124 D~~-l~~~s~~~~~~~~~~~l~~--~~------~~~~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l---  188 (330)
                      |+. +++++.++.  +..+....  ..      .+....|   ..+++|+||+++| ++|+.|++|++ |++.+++.   
T Consensus       216 ~~~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d~~i~i-wd~~~~~~~~~  291 (388)
T d1erja_         216 DGKYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRSVKL-WNLQNANNKSD  291 (388)
T ss_dssp             TCCEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE-EEEETTSEEEE-EEC--------
T ss_pred             CCCeEEEEcCCCe--EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE-EEEECCCcEEE-EeccCCccccc
Confidence            777 444333332  22222211  00      0111112   2578899999985 55668999999 99876543   


Q ss_pred             ---------cccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEE------eCC
Q psy682          189 ---------QEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVV------MSR  246 (330)
Q Consensus       189 ---------~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~------fS~  246 (330)
                               ......|.+.|..   +   ...+   +|+.||+|++|+. +|+++++|++|.+  .|.+++      |+|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~~~~~~sp  366 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL---SGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVANGSSLGP  366 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEE---EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECSSCTTCT
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEE---EEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEecCcccCC
Confidence                     3344566666621   1   2233   8999999999975 7999999999999  898886      578


Q ss_pred             CccEEEEcc-CCeEEEEee
Q psy682          247 EGVIVVNYE-RGHIAAFTM  264 (330)
Q Consensus       247 dG~~l~s~~-~~~~~~~s~  264 (330)
                      ||++||+++ |+++++|.+
T Consensus       367 d~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         367 EYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             TCEEEEEEETTSEEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEee
Confidence            999999985 889999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=3.2e-23  Score=191.01  Aligned_cols=216  Identities=11%  Similarity=0.125  Sum_probs=152.3

Q ss_pred             CcccCCCcEEEeeccccccc--ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALL--YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l--~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+|+.||+|+||++.+++..  .++++|...|.+|+|+|||+.                                     
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~-------------------------------------  116 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR-------------------------------------  116 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE-------------------------------------
T ss_pred             eccccCceEeeeeeeccccccccccccccCccccccccccccc-------------------------------------
Confidence            58999999999999887644  568999999999999999887                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccceeeee-
Q psy682           79 PSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKLRVRH-  155 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~~~~~-  155 (330)
                        +++++.+.+..+++|+.+... ..++.+|.+    .+.++.|+||+.+..++++.+..+..+.+.. .....+..+. 
T Consensus       117 --l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~  190 (311)
T d1nr0a1         117 --IAAVGEGRERFGHVFLFDTGTSNGNLTGQAR----AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK  190 (311)
T ss_dssp             --EEEEECCSSCSEEEEETTTCCBCBCCCCCSS----CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred             --ccccccccccccccccccccccccccccccc----ccccccccccceeeecccccccccccccccccccccccccccc
Confidence              356777788889999987554 455568874    6778999999984222232333344444322 1112222222 


Q ss_pred             --eEEEEecCCCeEEEeeccCCeEEEeeecccccccc-------cccCCCCcEE--E-e---HHHHHhhhccCCCcEEEE
Q psy682          156 --NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE-------GKFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       156 --~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~-------~l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~  220 (330)
                        .+++++||+++|+ +|+.|+++++ |+..+++...       ...+|.+.|.  + +   ...+   +||.||+|+||
T Consensus       191 ~i~~v~~~p~~~~l~-~~~~d~~v~~-~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~---tgs~Dg~v~iw  265 (311)
T d1nr0a1         191 FVHSVRYNPDGSLFA-STGGDGTIVL-YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA---SASADKTIKIW  265 (311)
T ss_dssp             CEEEEEECTTSSEEE-EEETTSCEEE-EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE---EEETTSEEEEE
T ss_pred             cccccccCccccccc-cccccccccc-cccccccccccccccccccccccccccccccCCCCCEEE---EEeCCCeEEEE
Confidence              5888999999855 5567999999 9987765433       3457888772  1 2   3333   89999999999


Q ss_pred             cc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeC
Q psy682          221 TT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  265 (330)
Q Consensus       221 ~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~n  265 (330)
                      +. +|+++++|..|... ....+.+.++++.|+++ .+|.++.|.++
T Consensus       266 d~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         266 NVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            75 89999999987652 23344555555566666 58999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.3e-22  Score=181.30  Aligned_cols=232  Identities=15%  Similarity=0.141  Sum_probs=163.6

Q ss_pred             cccceeecCCCceeEEEeCCCCCc--------------------Cccee--eeecCccEEEEEeCCCCCeeEeeecccee
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY--------------------SPMMF--STVLDDVCMSLKFPSNSPICHVTANTYVT   75 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~--------------------~~l~~--~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~   75 (330)
                      +++.++ +|...|++|+|||||++                    .++..  ..+|++.|.+++|+||++.+         
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l---------  112 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL---------  112 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE---------
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE---------
Confidence            344455 89999999999999997                    11111  22677788888888888864         


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCC-Cccc
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQK  150 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~-~~~~  150 (330)
                              ++++.|++|++|+.....   .....+|.    ..+..+.|++|+. +++++.  +..+..+.+... ....
T Consensus       113 --------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~--d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         113 --------IVGGEASTLSIWDLAAPTPRIKAELTSSA----PACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             --------EEEESSSEEEEEECCCC--EEEEEEECSS----SCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEE
T ss_pred             --------EEeeccccccccccccccccccccccccc----cccccccccccccccccccc--ccccccccccccccccc
Confidence                    788889999999986443   23334665    3566789999998 443222  223333333211 1111


Q ss_pred             eeee---eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE---e---HHHHHhhhccCCCcEEEEc
Q psy682          151 LRVR---HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS---S---ISLAWKNCQRDTSDVKVHT  221 (330)
Q Consensus       151 ~~~~---~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via---S---t~~lW~~SgS~Dgtvkl~~  221 (330)
                      ...+   ..++++++++++++ +|+.|+++++ |++.+++.++.+ +|.+.|.+   +   ...+   +|+.||.|++|+
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~-~~~~d~~v~i-~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~---~~~~d~~i~i~d  252 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLW-TGGLDNTVRS-WDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA---VGMESSNVEVLH  252 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEE-EEETTSEEEE-EETTTTEEEEEE-ECSSCEEEEEECTTSSEEE---EEETTSCEEEEE
T ss_pred             ccccccccccccccccccccc-cccccccccc-cccccceeeccc-ccccceEEEEEcccccccc---eecccccccccc
Confidence            1111   25788999999855 5568999999 999988887654 57777621   1   2223   799999999998


Q ss_pred             ccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe-eCCceeeeccCccccccc
Q psy682          222 TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT-MNGNRLRHESHNDNLQEL  281 (330)
Q Consensus       222 ~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s-~nG~~las~~~~~dVkEL  281 (330)
                      .+........+|.+  .|.+|+|+|||+.||+++ ++.+++|. .+|+.+....++..|..+
T Consensus       253 ~~~~~~~~~~~~~~--~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~  312 (337)
T d1gxra_         253 VNKPDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC  312 (337)
T ss_dssp             TTSSCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             cccccccccccccc--ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEE
Confidence            76555567788888  899999999999999985 78899995 568888877776666654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=169.80  Aligned_cols=240  Identities=14%  Similarity=0.127  Sum_probs=154.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCcc-EEEEEeCCCCCeeEeeeccc---eec
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDV-CMSLKFPSNSPICHVTANTY---VTL   76 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~-~~~v~Fs~~~~v~~~~~~~~---~~~   76 (330)
                      |||+.||+|||||+++++++.+|++|.+.|++|+|+  +++    +.++..|. +...... .+..........   ...
T Consensus        29 ~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~~~----l~s~s~D~~i~~~~~~-~~~~~~~~~~~~~~~~~~  101 (293)
T d1p22a2          29 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERV----IITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHL  101 (293)
T ss_dssp             EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SSE----EEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--cce----eecccccccccccccc-cccccccccccccccccc
Confidence            689999999999999999999999999999999985  444    55655554 3333333 222222221111   122


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCc----ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-CCccce
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAAS----IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-NFSQKL  151 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~----~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-~~~~~~  151 (330)
                      ..+.-..+++..++.+++|+......    .....|..    .+..+.+.++.... .+.++  .+..+.+.. .....+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~-~s~d~--~i~~~d~~~~~~~~~~  174 (293)
T d1p22a2         102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA----AVNVVDFDDKYIVS-ASGDR--TIKVWNTSTCEFVRTL  174 (293)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS----CEEEEEEETTEEEE-EETTS--EEEEEETTTCCEEEEE
T ss_pred             cccccceeecccccceeEeecccccccccccccccccc----ccccceeccccccc-ccCCC--ceeeecCCCCcEEEEE
Confidence            22333456677777899999865432    22234432    33344444443322 22322  223333211 111223


Q ss_pred             eeeee-EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-e---HHHHHhhhccCCCcEEEEcc----
Q psy682          152 RVRHN-CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-S---ISLAWKNCQRDTSDVKVHTT----  222 (330)
Q Consensus       152 ~~~~~-~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-S---t~~lW~~SgS~Dgtvkl~~~----  222 (330)
                      ..+.. ...+++++.+ +++|+.|++||+ |++.+++.+....+|...|.. +   ...+   +|+.||+|+||+.    
T Consensus       175 ~~~~~~v~~~~~~~~~-l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~---sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         175 NGHKRGIACLQYRDRL-VVSGSSDNTIRL-WDIECGACLRVLEGHEELVRCIRFDNKRIV---SGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             ECCSSCEEEEEEETTE-EEEEETTSCEEE-EETTTCCEEEEECCCSSCEEEEECCSSEEE---EEETTSCEEEEEHHHHT
T ss_pred             cccccccccccCCCCe-EEEecCCCEEEE-EecccceeeeeecccceeeeeccccceEEE---EEcCCCEEEEEECCCCc
Confidence            33322 3345667777 555668999999 999999999999999998732 2   2233   8999999999974    


Q ss_pred             ------cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          223 ------FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       223 ------~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                            ....+++|.+|.+  .|.+|+|  ||+.||+++ |+++++|.
T Consensus       250 ~~~~~~~~~~~~~~~~H~~--~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         250 DPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             STTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cccccCCceeeEEecCCCC--CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence                  2457899999999  9999999  567888886 78899883

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.8e-21  Score=178.96  Aligned_cols=204  Identities=10%  Similarity=0.050  Sum_probs=145.8

Q ss_pred             CcccCCCcEEEeeccccccccee--------ecCCCceeEEEeCCCCCc--------------------CcceeeeecCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF--------PSCDSSVRSLALSHDQKY--------------------SPMMFSTVLDD   52 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl--------~gH~~~V~svafSpdg~~--------------------~~l~~~~~~~d   52 (330)
                      |||+.||+||||++..++....+        ..|.+.|.+|+|+|||+.                    ..+....+|++
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            58999999999999876655543        568899999999999986                    11222346888


Q ss_pred             cEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCC
Q psy682           53 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTS  132 (330)
Q Consensus        53 ~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~  132 (330)
                      .+..+.|+|+++.+                .++++.|++|++|+.....                         ..    
T Consensus       161 ~v~~~~~~~~~~~~----------------~~~~~~d~~v~~~d~~~~~-------------------------~~----  195 (325)
T d1pgua1         161 RINACHLKQSRPMR----------------SMTVGDDGSVVFYQGPPFK-------------------------FS----  195 (325)
T ss_dssp             CEEEEEECSSSSCE----------------EEEEETTTEEEEEETTTBE-------------------------EE----
T ss_pred             ccccccccccccce----------------EEEeecccccccccccccc-------------------------cc----
Confidence            89999999998863                5778888999999873321                         00    


Q ss_pred             CCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----EE---e--H
Q psy682          133 NNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----FS---S--I  203 (330)
Q Consensus       133 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----ia---S--t  203 (330)
                              .....+  ........+++|+||+..++++|+.|++|++ |+++++++++.+.+|...|    ++   +  .
T Consensus       196 --------~~~~~~--~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i-wd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         196 --------ASDRTH--HKQGSFVRDVEFSPDSGEFVITVGSDRKISC-FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             --------EEECSS--SCTTCCEEEEEECSTTCCEEEEEETTCCEEE-EETTTCCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred             --------eecccc--cCCCCccEEeeeccccceeccccccccceee-eeeccccccccccccccccccceeeeeccCCC
Confidence                    000000  0011123578899985444777778999999 9999999999999998876    22   1  2


Q ss_pred             HHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCC--CccEEEEc-cCCeEEEEee
Q psy682          204 SLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSR--EGVIVVNY-ERGHIAAFTM  264 (330)
Q Consensus       204 ~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~--dG~~l~s~-~~~~~~~~s~  264 (330)
                      ..+   +||.||+|+||+. +|++++++..|.....+..+++++  ++ .|+++ .++++..|.+
T Consensus       265 ~l~---s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         265 KFA---TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEE---EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEE---EEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            333   8999999999976 699999988876622345555554  44 45566 4889999863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.7e-20  Score=172.14  Aligned_cols=250  Identities=14%  Similarity=0.097  Sum_probs=166.2

Q ss_pred             cccCCCcEEEeecccccc----cceeecCCCceeEEEeCCCCCc------Ccce--------------------------
Q psy682            2 SGGDKGIVEVWRTFNLAL----LYAFPSCDSSVRSLALSHDQKY------SPMM--------------------------   45 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~----l~tl~gH~~~V~svafSpdg~~------~~l~--------------------------   45 (330)
                      .+..++.+.+|+....+.    +....+|.+.|++|+|||||++      ..+.                          
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL  112 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeeccccccccccccc
Confidence            355788899998653321    2233479999999999999998      0000                          


Q ss_pred             ---eeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccc
Q psy682           46 ---FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPL  121 (330)
Q Consensus        46 ---~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~f  121 (330)
                         ....|+..|..++|+||++.+                 ++++.|++|++|+..... .....+|.+    .+.++.+
T Consensus       113 ~~~~~~~~~~~V~~l~~s~~~~~l-----------------~s~~~dg~v~i~~~~~~~~~~~~~~h~~----~v~~~~~  171 (388)
T d1erja_         113 NTSSSPSSDLYIRSVCFSPDGKFL-----------------ATGAEDRLIRIWDIENRKIVMILQGHEQ----DIYSLDY  171 (388)
T ss_dssp             ------CCCCBEEEEEECTTSSEE-----------------EEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEE
T ss_pred             ccccccCCCCCEEEEEECCCCCcc-----------------eecccccccccccccccccccccccccc----ccccccc
Confidence               011344556777777777764                 888899999999987555 444557874    6678999


Q ss_pred             cCCCc-eeccCCCCCCCcceeccCCCCccc-eeee--eeEEEEe-cCCCeEEEeeccCCeEEEeeeccccccccc-----
Q psy682          122 TLDPI-LTHPTSNNNAPVPKRHLGDNFSQK-LRVR--HNCFVTT-VDSRFLLACGFWDNSFREPFTTMYLALQEG-----  191 (330)
Q Consensus       122 s~D~~-l~~~s~~~~~~~~~~~l~~~~~~~-~~~~--~~~~~~s-pDg~~i~asg~~D~tirl~w~~~~g~l~~~-----  191 (330)
                      ++++. +++++.++  .+..+......... ...+  ..++++. +|+++ +++|+.|++|++ |+..+++....     
T Consensus       172 ~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i-~~~~~~~~~~~~~~~~  247 (388)
T d1erja_         172 FPSGDKLVSGSGDR--TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY-IAAGSLDRAVRV-WDSETGFLVERLDSEN  247 (388)
T ss_dssp             CTTSSEEEEEETTS--EEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE-EEEEETTSCEEE-EETTTCCEEEEEC---
T ss_pred             ccccccccccccce--eeeeeeccccccccccccccccccccccCCCCCe-EEEEcCCCeEEE-eecccCccceeecccc
Confidence            99988 44323322  23334332211100 1111  1244454 57877 566778999999 99988765443     


Q ss_pred             --ccCCCCcEE--E-e---HHHHHhhhccCCCcEEEEccc-------------CceeeecCCCCCCCCCcEEEeCCCccE
Q psy682          192 --KFDHPNRLF--S-S---ISLAWKNCQRDTSDVKVHTTF-------------GDLLRSLDPPSGFASPESVVMSREGVI  250 (330)
Q Consensus       192 --l~gH~d~Vi--a-S---t~~lW~~SgS~Dgtvkl~~~~-------------G~ll~tL~~h~~~~~v~~v~fS~dG~~  250 (330)
                        ..+|.+.|.  + +   ...+   +|+.||+|++|+..             +....+...|..  .|.+++|+|+|+.
T Consensus       248 ~~~~~h~~~v~~l~~s~~~~~l~---s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~  322 (388)
T d1erja_         248 ESGTGHKDSVYSVVFTRDGQSVV---SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEY  322 (388)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEE---EEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCE
T ss_pred             ccccCCCCCEEEEEECCCCCEEE---EEECCCcEEEEeccCCccccccccccccceeeecccccc--eEEEEEECCCCCE
Confidence              356888772  1 1   3333   89999999999742             445566777877  8999999999999


Q ss_pred             EEEcc-CCeEEEEe-eCCceeeeccCc-cccccc
Q psy682          251 VVNYE-RGHIAAFT-MNGNRLRHESHN-DNLQEL  281 (330)
Q Consensus       251 l~s~~-~~~~~~~s-~nG~~las~~~~-~dVkEL  281 (330)
                      |++|+ ++.++.|. .+|+.+.++..| +.|..+
T Consensus       323 l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~  356 (388)
T d1erja_         323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  356 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence            99995 78999996 568888888755 345544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.5e-21  Score=171.04  Aligned_cols=231  Identities=12%  Similarity=0.110  Sum_probs=143.4

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEE-----EEeCCCCCeeEeeecccee
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMS-----LKFPSNSPICHVTANTYVT   75 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~-----v~Fs~~~~v~~~~~~~~~~   75 (330)
                      +|||.||+|++|++.+++     .+|...|++++|++++.+    ..-+.++.+..     .+|.  ++..      ...
T Consensus        25 ~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~----~s~s~D~~v~~w~~~~~~~~--~~~~------~~~   87 (287)
T d1pgua2          25 ISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEY----SSISWDDTLKVNGITKHEFG--SQPK------VAS   87 (287)
T ss_dssp             EEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCC----EEEETTTEEEETTEEEEECS--SCEE------EEE
T ss_pred             EEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeE----EEEeeccccccccccccccc--ccee------eee
Confidence            589999999999987653     689999999999987665    11111221111     1111  1111      112


Q ss_pred             ccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee
Q psy682           76 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR  154 (330)
Q Consensus        76 ~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~  154 (330)
                      +.+++...++++.+. +.+|+...........+      ......+++++. +++.+. ....+..+.+... .......
T Consensus        88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~-~~~~v~~~~~~~~-~~~~~~~  158 (287)
T d1pgua2          88 ANNDGFTAVLTNDDD-LLILQSFTGDIIKSVRL------NSPGSAVSLSQNYVAVGLE-EGNTIQVFKLSDL-EVSFDLK  158 (287)
T ss_dssp             ECSSSEEEEEETTSE-EEEEETTTCCEEEEEEC------SSCEEEEEECSSEEEEEET-TTSCEEEEETTEE-EEEEECS
T ss_pred             eccCCceEEEeeccc-ceeeeccceeeeeeccc------cceeeeeeccCcceeeecc-ccceeeeeecccc-ceeeeee
Confidence            334444445555544 66777655443332222      234556777777 443222 2222344444221 1001111


Q ss_pred             --eeEEE----EecCCCeEEEeeccCCeEEEeeeccccccc-ccccCCCCcE--EE--e------------HHHHHhhhc
Q psy682          155 --HNCFV----TTVDSRFLLACGFWDNSFREPFTTMYLALQ-EGKFDHPNRL--FS--S------------ISLAWKNCQ  211 (330)
Q Consensus       155 --~~~~~----~spDg~~i~asg~~D~tirl~w~~~~g~l~-~~l~gH~d~V--ia--S------------t~~lW~~Sg  211 (330)
                        ...-.    |+||+++ +++|+.|+.|++ |+..+++.. ..+.+|...|  ++  .            ...+   ||
T Consensus       159 ~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i-~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~---sg  233 (287)
T d1pgua2         159 TPLRAKPSYISISPSETY-IAAGDVMGKILL-YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA---TG  233 (287)
T ss_dssp             SCCSSCEEEEEECTTSSE-EEEEETTSCEEE-EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE---EE
T ss_pred             eccCCceeEEEeccCccc-cccccccccccc-eeecccccccccccccccccceeeecccccccccccCCCCeeE---ee
Confidence              12223    3789998 556678999999 999888754 4577899887  21  1            1122   89


Q ss_pred             cCCCcEEEEcc-c-CceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee
Q psy682          212 RDTSDVKVHTT-F-GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM  264 (330)
Q Consensus       212 S~Dgtvkl~~~-~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~  264 (330)
                      |.||+|+||+. + +++++.+.+|.+  .|.+|+|+||++++..++|+.+++|++
T Consensus       234 s~D~~i~iw~~~~~~~~~~~~~~h~~--~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKIIKALNAHKD--GVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEESSCTTCCEEETTSSTT--CEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             cCCCeEEEEECCCCCeEEEEeCCCCC--CeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            99999999975 3 788999999999  999999999998666667999999975

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3.8e-21  Score=180.76  Aligned_cols=232  Identities=11%  Similarity=0.059  Sum_probs=143.0

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCc
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPS   80 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~   80 (330)
                      ++++.||+|++|++..+.....+..+...+..              ...+...++.+++.++.+.            ...
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~------------~~~  136 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLD--------------SDMKKHSFWALKWGASNDR------------LLS  136 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------------TTGGGSCEEEEEEECCC----------------C
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceee--------------eccCCCceEEEEEecCCCc------------ccc
Confidence            46788999999998765544443332211100              0112233444455444332            122


Q ss_pred             EEEEEcCCcceEEEeCCCCCCc---------------ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC
Q psy682           81 VVTVTANHQFAINRWNPDYAAS---------------IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  145 (330)
Q Consensus        81 ~v~vS~~~~~tv~lW~~~~~~~---------------~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~  145 (330)
                      ...++++.|++|++|+......               .............+.++.|+||+.+++++.++...+|....+.
T Consensus       137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~  216 (393)
T d1sq9a_         137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR  216 (393)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE
T ss_pred             cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccc
Confidence            3457778888999998632210               0001111111234678999999998876666555444332222


Q ss_pred             C-----Cccceeeee---eEEEEecCCCeEEEeeccCCe---EEEeeecccccccccc-------------cCCCCcEE-
Q psy682          146 N-----FSQKLRVRH---NCFVTTVDSRFLLACGFWDNS---FREPFTTMYLALQEGK-------------FDHPNRLF-  200 (330)
Q Consensus       146 ~-----~~~~~~~~~---~~~~~spDg~~i~asg~~D~t---irl~w~~~~g~l~~~l-------------~gH~d~Vi-  200 (330)
                      +     ..+.+..|.   .+++|+|||++ +++|+.|++   ||+ |++++|++++++             .||.+.|. 
T Consensus       217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~-l~sgs~D~t~~~i~l-wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~  294 (393)
T d1sq9a_         217 PLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITL-YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS  294 (393)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEE-EETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred             cccccccccccccccceEEEcccccccce-eeeecCCCCcceeee-cccccceeeeeeccccccccceeeeecccCceee
Confidence            1     112233333   58899999999 555667876   899 999988877666             48999882 


Q ss_pred             ---Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCc----EEEeCCCccEEEEccCCeEEEEeeCC
Q psy682          201 ---SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPE----SVVMSREGVIVVNYERGHIAAFTMNG  266 (330)
Q Consensus       201 ---aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~----~v~fS~dG~~l~s~~~~~~~~~s~nG  266 (330)
                         .+  ...+   |||.||+||||+. +|+++++|++|.+  .|+    .++|+|+|..+++++...+ .|-.+|
T Consensus       295 l~fspd~~~l~---S~s~D~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  364 (393)
T d1sq9a_         295 LSFNDSGETLC---SAGWDGKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAEPGVFDV-KFLKKG  364 (393)
T ss_dssp             EEECSSSSEEE---EEETTSEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSCCEEEE-EEECTT
T ss_pred             eccCCCCCeeE---EECCCCEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEEcccceE-EECccC
Confidence               22  3444   9999999999975 7999999999988  565    6899999999887653333 344444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=8.9e-20  Score=162.42  Aligned_cols=197  Identities=15%  Similarity=0.108  Sum_probs=136.6

Q ss_pred             ccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeC
Q psy682           17 LALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN   96 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~   96 (330)
                      |++.+++.||.+.|++|+|||||++                                         +||++.|++|++|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~-----------------------------------------l~s~s~Dg~v~vWd   40 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKT-----------------------------------------LFSADAEGHINSWD   40 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSE-----------------------------------------EEEEETTSCEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCE-----------------------------------------EEEEcCCCeEEEEE
Confidence            6788899999999999999999887                                         47888999999999


Q ss_pred             CCCCC-cccCC-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccc-------eeeeeeEEEEecCCCeE
Q psy682           97 PDYAA-SIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK-------LRVRHNCFVTTVDSRFL  167 (330)
Q Consensus        97 ~~~~~-~~~~~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~spDg~~i  167 (330)
                      .+.+. +.... +|.    ..+.++.|+||+.+++++.++  .+..+.........       ......+++++|||+++
T Consensus        41 ~~~~~~~~~~~~~h~----~~v~~v~~~~~g~~~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~  114 (299)
T d1nr0a2          41 ISTGISNRVFPDVHA----TMITGIKTTSKGDLFTVSWDD--HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  114 (299)
T ss_dssp             TTTCCEEECSSCSCS----SCEEEEEECTTSCEEEEETTT--EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             CCCCcEEEEEcCCCC----CcEEEEEeeccceeeccccee--eEEEeccCCccccccccccccccccccccccccccccc
Confidence            87655 44443 676    467789999999977644433  33444332211111       11122578899999984


Q ss_pred             EEeeccCCeEEEeeecccccccccccCCCCcEEE-e---HHHHHhhhccCCCcEEEEcccC-ceee-ecCCCCCCCCCcE
Q psy682          168 LACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-S---ISLAWKNCQRDTSDVKVHTTFG-DLLR-SLDPPSGFASPES  241 (330)
Q Consensus       168 ~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-S---t~~lW~~SgS~Dgtvkl~~~~G-~ll~-tL~~h~~~~~v~~  241 (330)
                       +++ .++.+++ |+.  ++..+...+|....++ +   ...+   +|+.||.|++|+.++ ++.. ....|.+  .|.+
T Consensus       115 -~~~-~~~~i~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~l~---~g~~dg~i~~~d~~~~~~~~~~~~~~~~--~i~~  184 (299)
T d1nr0a2         115 -VAA-CYKHIAI-YSH--GKLTEVPISYNSSCVALSNDKQFVA---VGGQDSKVHVYKLSGASVSEVKTIVHPA--EITS  184 (299)
T ss_dssp             -EEE-ESSEEEE-EET--TEEEEEECSSCEEEEEECTTSCEEE---EEETTSEEEEEEEETTEEEEEEEEECSS--CEEE
T ss_pred             -ccc-ccccccc-ccc--ccccccccccccccccccccccccc---cccccccccccccccccccccccccccc--cccc
Confidence             444 4789999 986  4555555566544332 1   2223   799999999998754 4433 3446777  8999


Q ss_pred             EEeCCCccEEEEcc-CCeEEEEee-CCceee
Q psy682          242 VVMSREGVIVVNYE-RGHIAAFTM-NGNRLR  270 (330)
Q Consensus       242 v~fS~dG~~l~s~~-~~~~~~~s~-nG~~la  270 (330)
                      ++|+|+|+.|++++ ++.++.|.. +++.+.
T Consensus       185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         185 VAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            99999999999985 677777764 344443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.7e-20  Score=173.91  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=94.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccc------cccccCCCCcEE----Ee--HHHHHhhhccCCCc---EEEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL------QEGKFDHPNRLF----SS--ISLAWKNCQRDTSD---VKVH  220 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l------~~~l~gH~d~Vi----aS--t~~lW~~SgS~Dgt---vkl~  220 (330)
                      .|++|+||| + +++|+.|++||+ |++.+++.      .+.+.+|.+.|.    .+  ...+   +||.|++   |+||
T Consensus       188 ~~v~~s~dg-~-lasgs~Dg~i~i-wd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~---sgs~D~t~~~i~lw  261 (393)
T d1sq9a_         188 TSVDISERG-L-IATGFNNGTVQI-SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA---IAHDSNSFGCITLY  261 (393)
T ss_dssp             CEEEECTTS-E-EEEECTTSEEEE-EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE---EEEEETTEEEEEEE
T ss_pred             EEEEECCCC-E-EEEEeCCCcEEE-EeecccccccccccccccccccceEEEcccccccceee---eecCCCCcceeeec
Confidence            589999998 5 677889999999 99988764      456788999882    22  4444   8999986   8899


Q ss_pred             cc-cCceeeecC-------------CCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeeccCcc-cccccc
Q psy682          221 TT-FGDLLRSLD-------------PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHESHND-NLQELI  282 (330)
Q Consensus       221 ~~-~G~ll~tL~-------------~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~~~~-dVkELi  282 (330)
                      +. +|+++++|.             ||.+  .|++|+|||||++|||++ |+++++|.+ .|++++++..|. .|....
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~--~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~  338 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE  338 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGG
T ss_pred             ccccceeeeeeccccccccceeeeecccC--ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCc
Confidence            75 788888885             7888  999999999999999996 889999975 699999998664 454433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=9.2e-20  Score=176.30  Aligned_cols=170  Identities=9%  Similarity=-0.056  Sum_probs=107.8

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Cccee-----eeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMF-----STVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~-----~~~~~d~~~~v   57 (330)
                      ++.++||+|+|||..+++.+.+++.|. .+.+|+|||||++                  .+...     ..+|...+++.
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            467899999999999999999999884 6999999999998                  00000     01333444555


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCC-------CCCCccccCCCceec
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGS-------PPGNLPLTLDPILTH  129 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~-------~~~~l~fs~D~~l~~  129 (330)
                      .|||||+.+                .|+++.+.+|++|+....... ...+|...+..       ....+.+++|+....
T Consensus       115 ~~SpDG~~l----------------~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~  178 (432)
T d1qksa2         115 MEGWEDKYA----------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  178 (432)
T ss_dssp             STTCTTTEE----------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             ccCCCCCEE----------------EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEE
Confidence            556666643                577888999999998766543 33355432221       122466788887332


Q ss_pred             cCCCCCCCcceeccCCCC-ccceeee----eeEEEEecCCCeEEEeeccCCeEEEeeecccccc
Q psy682          130 PTSNNNAPVPKRHLGDNF-SQKLRVR----HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL  188 (330)
Q Consensus       130 ~s~~~~~~~~~~~l~~~~-~~~~~~~----~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l  188 (330)
                      .+...+..++.+.....- .+...+.    ...++|+|||+++++++..++.+.+ ++.+++++
T Consensus       179 vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v-~d~~~~~~  241 (432)
T d1qksa2         179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVV-IDTKEGKL  241 (432)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEE-EETTTTEE
T ss_pred             EEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEE-eecccceE
Confidence            223333333333322210 0111111    2578999999998888888888888 88765544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=1.9e-19  Score=162.20  Aligned_cols=232  Identities=10%  Similarity=-0.008  Sum_probs=148.5

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCc-------------------CcceeeeecCccEEEEEeCCCCCe
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------------------SPMMFSTVLDDVCMSLKFPSNSPI   65 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------------------~~l~~~~~~~d~~~~v~Fs~~~~v   65 (330)
                      .+|.|.+|++..|+.++.  +|...|.+++|||||+.                   ..+.....|...+..+.|+|||+.
T Consensus        22 ~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~   99 (360)
T d1k32a3          22 SRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF   99 (360)
T ss_dssp             ETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE
T ss_pred             ECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccc
Confidence            468999999988776553  79999999999999987                   111223366777788888888887


Q ss_pred             eEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCceec-cCCCCCC-------
Q psy682           66 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTH-PTSNNNA-------  136 (330)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~l~~-~s~~~~~-------  136 (330)
                      +                 ++++.+..+++|+.++....... .|.    ....+++|+||+++.+ .......       
T Consensus       100 l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3         100 A-----------------VVANDRFEIMTVDLETGKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             E-----------------EEEETTSEEEEEETTTCCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             c-----------------ceeccccccccccccccceeeeeeccc----ccccchhhccceeeeeeeccccccceeeccc
Confidence            5                 77788888999999877755544 554    3566799999999442 2111110       


Q ss_pred             -CcceeccCCCCccce---eeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc-------ccccCCCCcE------
Q psy682          137 -PVPKRHLGDNFSQKL---RVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ-------EGKFDHPNRL------  199 (330)
Q Consensus       137 -~~~~~~l~~~~~~~~---~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~-------~~l~gH~d~V------  199 (330)
                       ....+.+...-...+   .....+++++|||++|+. ++.|+.+++ |+.....+.       ..+..|.+.+      
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~s~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY-LSYRSLDPS-PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  236 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE-EESCCCCCE-ECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             cceeeeccccCceeeecccccccccccccCCCCEEEE-EeCCCceEc-ccccccceeeccccceEEEecccCccccceEC
Confidence             011122211100000   111246789999999655 457888888 875332110       0111111111      


Q ss_pred             --------------------------------E---------Ee-----HHHHHhhhccCCCcEEEEcccCceeeecCCC
Q psy682          200 --------------------------------F---------SS-----ISLAWKNCQRDTSDVKVHTTFGDLLRSLDPP  233 (330)
Q Consensus       200 --------------------------------i---------aS-----t~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h  233 (330)
                                                      +         +.     ....+-.+++.|++|++|+..++.+..+.+ 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-  315 (360)
T d1k32a3         237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-  315 (360)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE-
T ss_pred             CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecC-
Confidence                                            0         00     111112288999999999886655555543 


Q ss_pred             CCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          234 SGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       234 ~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                          .|.+++|||||+.|++++ ++.+++|..+.
T Consensus       316 ----~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         316 ----NLTDLRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             ----EEEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             ----CcCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence                689999999999999985 89999998653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.3e-19  Score=166.53  Aligned_cols=185  Identities=6%  Similarity=0.016  Sum_probs=128.0

Q ss_pred             EEEcCCcceEEEeCCCCCCcc-c--------CCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccC-CCCccce
Q psy682           83 TVTANHQFAINRWNPDYAASI-Q--------SPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG-DNFSQKL  151 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~-~--------~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~-~~~~~~~  151 (330)
                      +||++.|++|++|+....... .        ...|.    .++.++.|++|++ +++++.+.......+... +.....+
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~----~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA----GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV  155 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS----SCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeeccccccccccc----CcEEEEEECCCCCccceeeccccceEEEEeecccccceee
Confidence            589999999999987533211 1        12343    3577899999999 444333333322222211 1112233


Q ss_pred             eeee---eEEEEecCCCeEEEeeccCCeEEEeeecccccccc---cccCCCCcEE----Ee---HHHHHhhhccCCCcEE
Q psy682          152 RVRH---NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE---GKFDHPNRLF----SS---ISLAWKNCQRDTSDVK  218 (330)
Q Consensus       152 ~~~~---~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~---~l~gH~d~Vi----aS---t~~lW~~SgS~Dgtvk  218 (330)
                      ..|.   .+++|+|++++++++++.|+++++ |+...++...   ...+|.+.|.    ..   ...+   +|+.||+|+
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~-~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~---s~~~d~~i~  231 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVF-YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI---TVGSDRKIS  231 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEE-EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE---EEETTCCEE
T ss_pred             eecccccccccccccccceEEEeeccccccc-ccccccccceecccccCCCCccEEeeeccccceecc---cccccccee
Confidence            3332   578899999987777778999999 9987777544   4456666662    11   2333   899999999


Q ss_pred             EEcc-cCceeeecCCCCCCCCCcEEEeC---CCccEEEEcc-CCeEEEEeeC-CceeeeccCccc
Q psy682          219 VHTT-FGDLLRSLDPPSGFASPESVVMS---REGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDN  277 (330)
Q Consensus       219 l~~~-~G~ll~tL~~h~~~~~v~~v~fS---~dG~~l~s~~-~~~~~~~s~n-G~~las~~~~~d  277 (330)
                      +|+. +|+.+++|++|..  .|..+.|+   |||+.|++++ ++.+++|.+. |+.++....+..
T Consensus       232 iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             EEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             eeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            9974 7999999999988  78877777   8999999985 8899999865 777777765543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=2.8e-19  Score=170.47  Aligned_cols=248  Identities=11%  Similarity=0.005  Sum_probs=156.3

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc------------------Cccee-----eeecCccEEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMF-----STVLDDVCMSL   57 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~-----~~~~~d~~~~v   57 (330)
                      +++++||+|+|||+.+++.+.++++|. .+.+|+|||||++                  .+...     ..+|...+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            467899999999999999999999985 5999999999998                  10010     11445556666


Q ss_pred             EeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCCCC-------CCCCccccCCCceec
Q psy682           58 KFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGS-------PPGNLPLTLDPILTH  129 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~~~-------~~~~l~fs~D~~l~~  129 (330)
                      .|+|||+.+                .+++..+.++++|+......... .+|...+..       ....+.+++|+....
T Consensus       115 ~~spDG~~l----------------~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         115 FKGYEDRYT----------------IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             STTCTTTEE----------------EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             eecCCCCEE----------------EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence            777777764                46666788899999876664433 355432221       112234444444221


Q ss_pred             cCCCCCCCcceeccCCCCccceee-------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC----CCc
Q psy682          130 PTSNNNAPVPKRHLGDNFSQKLRV-------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH----PNR  198 (330)
Q Consensus       130 ~s~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH----~d~  198 (330)
                      .+..++..+........  ..+..       ....++|+||+++++++...+..+.+ ++..++++.......    ...
T Consensus       179 ~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         179 VNVKETGKVLLVNYKDI--DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV-IDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEETTTTEEEEEECSSS--SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEE-EETTTTEEEEEEECSSCCCCSC
T ss_pred             EecCCCCeEEEEEeccc--cceeeEEeccCCccEeeeECCCCcEEEeeeecccceee-eecccccEEEEeccCCcccccc
Confidence            11111111111111111  11111       12468899999999999888888998 999888876544322    221


Q ss_pred             E--EEe--HHHHHhhhccCCCcEEEEcc--------cCceeeecCCCCCCCCCcEEEeCCCccEEEE-------c-cCCe
Q psy682          199 L--FSS--ISLAWKNCQRDTSDVKVHTT--------FGDLLRSLDPPSGFASPESVVMSREGVIVVN-------Y-ERGH  258 (330)
Q Consensus       199 V--iaS--t~~lW~~SgS~Dgtvkl~~~--------~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s-------~-~~~~  258 (330)
                      .  +..  ....+..+.+.|+++.+|..        .+++.++|++|..  .|++|+|||||+.|+.       + .+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~--~v~~v~~sPdg~~l~v~~~~~~s~~~~~t  333 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQS  333 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS--CCCCEECCTTCSEEEECCTTCSSHHHHTC
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCC--ceeEEEcCCCCceEEEeecCCCCcccCCE
Confidence            1  111  11112225677888888743        4789999999988  9999999999999994       3 2567


Q ss_pred             EEEEee-CCceee
Q psy682          259 IAAFTM-NGNRLR  270 (330)
Q Consensus       259 ~~~~s~-nG~~la  270 (330)
                      +.+|.. +|+.+.
T Consensus       334 v~vwd~~t~~~~~  346 (426)
T d1hzua2         334 VAVFDLKNLDAKY  346 (426)
T ss_dssp             EEEEETTCTTSCC
T ss_pred             EEEEECCCCCcCe
Confidence            777764 344443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.1e-18  Score=155.17  Aligned_cols=196  Identities=9%  Similarity=0.029  Sum_probs=131.9

Q ss_pred             cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      +..++|+||.+.|++|+|||||++                                         +||++.|++|++|+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~-----------------------------------------l~sgs~Dg~v~iWd~   84 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRL-----------------------------------------LVSASQDGKLIIWDS   84 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSE-----------------------------------------EEEEETTTEEEEEET
T ss_pred             eeeEEECCCCCCEEEEEECCCCCE-----------------------------------------EEEEECCCceeeeec
Confidence            456678888888888888887776                                         488899999999998


Q ss_pred             CCCC-cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCC---ccceeeee---eEEEEecCCCeEEE
Q psy682           98 DYAA-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNF---SQKLRVRH---NCFVTTVDSRFLLA  169 (330)
Q Consensus        98 ~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~---~~~~~~~~---~~~~~spDg~~i~a  169 (330)
                      ..+. +..+.+|.    .++.++.|+||+. +++++.++....+........   ...+..+.   .+.... .+.. +.
T Consensus        85 ~~~~~~~~~~~~~----~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~  158 (340)
T d1tbga_          85 YTTNKVHAIPLRS----SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQ-IV  158 (340)
T ss_dssp             TTTEEEEEEECSC----SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTE-EE
T ss_pred             ccceeEEEEeccc----ccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccc-cc
Confidence            7555 44555786    4677899999999 444333332222221111110   11122222   222233 3334 44


Q ss_pred             eeccCCeEEEeeecccccccccccCCCCcEEEe------HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEE
Q psy682          170 CGFWDNSFREPFTTMYLALQEGKFDHPNRLFSS------ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESV  242 (330)
Q Consensus       170 sg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaS------t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v  242 (330)
                      ....|.+.+. |.............+...+...      ...+   +|+.|++|++|+. +|++++++.+|.+  .|.+|
T Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~v~i~d~~~~~~~~~~~~h~~--~i~~v  232 (340)
T d1tbga_         159 TSSGDTTCAL-WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV---SGACDASAKLWDVREGMCRQTFTGHES--DINAI  232 (340)
T ss_dssp             EEETTTEEEE-EETTTTEEEEEEECCSSCEEEEEECTTSSEEE---EEETTTEEEEEETTTTEEEEEECCCSS--CEEEE
T ss_pred             cccccccccc-cccccccccccccccceeEeeeccccccceeE---EeecCceEEEEECCCCcEEEEEeCCCC--CeEEE
Confidence            4557999988 7776666555556666655211      2223   8999999999975 7999999999999  99999


Q ss_pred             EeCCCccEEEEcc-CCeEEEEeeCC
Q psy682          243 VMSREGVIVVNYE-RGHIAAFTMNG  266 (330)
Q Consensus       243 ~fS~dG~~l~s~~-~~~~~~~s~nG  266 (330)
                      +|+|+|+.||+++ ++.++.|..+.
T Consensus       233 ~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         233 CFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EECCCCCEEEEEeCCCeEEEEeecc
Confidence            9999999999985 67777776543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3.7e-19  Score=165.71  Aligned_cols=179  Identities=9%  Similarity=0.036  Sum_probs=123.9

Q ss_pred             EEEcCCcceEEEeCCCCCC---cccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccc--eeee--
Q psy682           83 TVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQK--LRVR--  154 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~---~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~--~~~~--  154 (330)
                      +|+++.+++|++|+.+++.   ...+.+|.+    ++.++.|+||+. +++++.++...+|...-+. ..+.  +..+  
T Consensus        22 la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~----~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~~~~~~   96 (371)
T d1k8kc_          22 IAICPNNHEVHIYEKSGNKWVQVHELKEHNG----QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-WKPTLVILRINR   96 (371)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEEECCSS----CEEEEEEETTTTEEEEEETTSCEEEEEEETTE-EEEEEECCCCSS
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEecCCCC----CEEEEEECCCCCEEEEEECCCeEEEEeecccc-cccccccccccc
Confidence            3777888899999987653   444568974    678899999999 5654444444444332111 1111  1122  


Q ss_pred             -eeEEEEecCCCeEEEeeccCCeEEEeeeccccc----ccccccCCCCcEE--E--e--HHHHHhhhccCCCcEEEEccc
Q psy682          155 -HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLA----LQEGKFDHPNRLF--S--S--ISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       155 -~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~----l~~~l~gH~d~Vi--a--S--t~~lW~~SgS~Dgtvkl~~~~  223 (330)
                       ..+++|+||+++ +++|+.|++|++ |..+.++    ......+|.+.|.  +  +  ...+   +||.||+|++|+..
T Consensus        97 ~v~~i~~~p~~~~-l~~~s~d~~i~i-~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~---s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          97 AARCVRWAPNEKK-FAVGSGSRVISI-CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA---AGSCDFKCRIFSAY  171 (371)
T ss_dssp             CEEEEEECTTSSE-EEEEETTSSEEE-EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE---EEETTSCEEEEECC
T ss_pred             ccccccccccccc-ceeecccCccee-eeeeccccccccccccccccccccccccccccccee---ccccCcEEEEEeec
Confidence             258889999999 555668999999 9987654    3445667888772  1  1  3334   89999999999742


Q ss_pred             -------------------CceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCceeeecc
Q psy682          224 -------------------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGNRLRHES  273 (330)
Q Consensus       224 -------------------G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~~las~~  273 (330)
                                         |+++.++.+|.+  .|.+++|||||+.||+++ ++.+.+|.. .|+.+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             cCccccccccccccccccceeeeeeccCccC--cEEEEEeecccccccccccCCcceEEeeecccceeeee
Confidence                               567888889988  999999999999999985 676666643 344444443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.76  E-value=3e-17  Score=144.23  Aligned_cols=245  Identities=11%  Similarity=0.068  Sum_probs=159.6

Q ss_pred             CcccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeee-cCcc--------------------EEEEEe
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTV-LDDV--------------------CMSLKF   59 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~-~~d~--------------------~~~v~F   59 (330)
                      ++++.|++|++||+++++.+++++.. ....+|+|||||+.   .+..+ .++.                    ...+.|
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~---l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~   81 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTK---VYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV   81 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE---EEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCE---EEEEECCCCEEEEEECCCCceeeeeecccccccccc
Confidence            46788999999999999999999865 45789999999986   11111 1112                    244455


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcc
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP  139 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~  139 (330)
                      ++++..                +.+++..+..+.+|+...........+.    .....+.|+||+.....+...+....
T Consensus        82 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg~~~~~~~~~~~~~~  141 (301)
T d1l0qa2          82 SPDGKQ----------------VYVTNMASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVS  141 (301)
T ss_dssp             CTTSSE----------------EEEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc----------------ccccccccceeeecccccceeeeecccc----ccceEEEeecCCCeeeeeecccccee
Confidence            555554                4567777888999998776644444332    24567999999994322222222222


Q ss_pred             eeccCCC-Cccceee--eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---EEe--HHHHHhhhc
Q psy682          140 KRHLGDN-FSQKLRV--RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---FSS--ISLAWKNCQ  211 (330)
Q Consensus       140 ~~~l~~~-~~~~~~~--~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS--t~~lW~~Sg  211 (330)
                      .+..... ....+..  ...+++++||++++++++..+..+.+ |.....++...+..+....   +..  ...+.-.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV-IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE-EETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEEC
T ss_pred             eeeccccceeeecccCCCceEEEeeccccceeeeccccccccc-ccccceeeeecccccCCcceeecccccccccccccc
Confidence            2222111 1111111  12578899999998888876677777 8887677766665554433   111  111000145


Q ss_pred             cCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEe-eCCceeeecc
Q psy682          212 RDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFT-MNGNRLRHES  273 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s-~nG~~las~~  273 (330)
                      +.+++|++|+. +|++++++..+.   .|..|+|||||+.| |++ .++++..|. -+|+.++++.
T Consensus       221 ~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         221 KYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            67789999975 799999887643   58999999999965 565 588999997 4677777765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.5e-19  Score=156.43  Aligned_cols=215  Identities=9%  Similarity=-0.035  Sum_probs=127.7

Q ss_pred             CcccCCCcEEEeeccccccc---ceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceecc
Q psy682            1 MSGGDKGIVEVWRTFNLALL---YAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLH   77 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l---~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~   77 (330)
                      ||||.||+||||++..+...   ....+|.+.|.+|+|+|++..                                    
T Consensus        27 ~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~------------------------------------   70 (342)
T d1yfqa_          27 LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL------------------------------------   70 (342)
T ss_dssp             EEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE------------------------------------
T ss_pred             EEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC------------------------------------
Confidence            58999999999999765433   333479999999999987544                                    


Q ss_pred             CCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCcc------
Q psy682           78 MPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQ------  149 (330)
Q Consensus        78 ~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~------  149 (330)
                          .+++++.|++|++|+.......... .+..   .......+.++.. +++++.+....++..+.......      
T Consensus        71 ----~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~  143 (342)
T d1yfqa_          71 ----QIYVGTVQGEILKVDLIGSPSFQALTNNEA---NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             ----EEEEEETTSCEEEECSSSSSSEEECBSCCC---CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred             ----EEEEcccccceeeeeccccccccccccccc---ccccccccccccccccccccccccceeeccccccceeeecccc
Confidence                3588889999999999766544333 2221   1222333344444 44333333222221111111000      


Q ss_pred             --ceeeeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc---CCCCcE------------EE--e---HHHHH
Q psy682          150 --KLRVRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF---DHPNRL------------FS--S---ISLAW  207 (330)
Q Consensus       150 --~~~~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~---gH~d~V------------ia--S---t~~lW  207 (330)
                        .......++.+.+++.. ++.++.|++|++ |++..++......   .+...+            ++  +   .+.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         144 SNNTKVKNKIFTMDTNSSR-LIVGMNNSQVQW-FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SSSSSSCCCEEEEEECSSE-EEEEESTTEEEE-EESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cccccceeeeeeeeccCCc-eeeecCCCcEEE-EecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence              00111246677888888 445668999999 9986554322211   111111            11  1   22222


Q ss_pred             hh--------------------------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEE
Q psy682          208 KN--------------------------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESV  242 (330)
Q Consensus       208 ~~--------------------------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v  242 (330)
                      ..                                            |||.||+|+||+. +++.++++..+.   .+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~  298 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVV  298 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEEE
Confidence            11                                            8999999999976 688899886542   46778


Q ss_pred             EeCCCccEEEEc-cCCeEEEEe
Q psy682          243 VMSREGVIVVNY-ERGHIAAFT  263 (330)
Q Consensus       243 ~fS~dG~~l~s~-~~~~~~~~s  263 (330)
                      +|+|+|+.+|.| ++++...|.
T Consensus       299 ~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         299 KIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             EEEECSSEEEEEEECTHHHHCS
T ss_pred             EEEeCCCEEEEEEcCCcEEEee
Confidence            899999998887 466544443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.4e-18  Score=151.67  Aligned_cols=176  Identities=14%  Similarity=0.139  Sum_probs=115.8

Q ss_pred             EEEcCCcceEEEeCCCCCC-cccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCC----ccceeeeeeE
Q psy682           83 TVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----SQKLRVRHNC  157 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~-~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~----~~~~~~~~~~  157 (330)
                      +||++.|++|++|+..... +.++.+|.+    ++.++.|++|+.+++++.++...++........    ..........
T Consensus        26 l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~----~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          26 VITGADDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECCSS----CEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEECCCC----CEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccc
Confidence            4888999999999986544 566679974    677899999998887555554433322211100    0001111235


Q ss_pred             EEEecCCCeEEEeeccCCeEEEeeeccccccccc-----------------------ccCCCCcE---------EEe---
Q psy682          158 FVTTVDSRFLLACGFWDNSFREPFTTMYLALQEG-----------------------KFDHPNRL---------FSS---  202 (330)
Q Consensus       158 ~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~-----------------------l~gH~d~V---------iaS---  202 (330)
                      ..+++++++ +++++.|++|++ |++.+++....                       ...|...|         ++.   
T Consensus       102 ~~~~~~~~~-~~~~~~d~~i~i-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (355)
T d1nexb2         102 IVEYKNIKY-IVTGSRDNTLHV-WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY  179 (355)
T ss_dssp             EEEETTEEE-EEEEETTSEEEE-EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred             cccccccce-eeeecCCCcEEE-EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence            567889988 556668999999 99876543221                       11222222         111   


Q ss_pred             --HHHHHhh-----------------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccE
Q psy682          203 --ISLAWKN-----------------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI  250 (330)
Q Consensus       203 --t~~lW~~-----------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~  250 (330)
                        .+++|+.                             +++.||+|++|+. +|+++..+++|.+  .|.+++|++  +.
T Consensus       180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~~~--~~  255 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLSD--KF  255 (355)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CCCEEEECS--SE
T ss_pred             cceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc--ccccccccc--ce
Confidence              4455544                             8899999999965 7999999999999  999999975  57


Q ss_pred             EEEc-cCCeEEEEeeCCce
Q psy682          251 VVNY-ERGHIAAFTMNGNR  268 (330)
Q Consensus       251 l~s~-~~~~~~~~s~nG~~  268 (330)
                      |+++ .++.++.|..+...
T Consensus       256 l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         256 LVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             EEEECTTSEEEEEETTTCC
T ss_pred             eeeeecccccccccccccc
Confidence            7777 48888888776543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.4e-18  Score=151.08  Aligned_cols=206  Identities=11%  Similarity=0.080  Sum_probs=126.4

Q ss_pred             cccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNP   97 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~   97 (330)
                      |++...++|.+.|++|+|||||++                                         +|+++.|++|++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~-----------------------------------------L~s~s~Dg~v~iwd~   40 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSL-----------------------------------------LLITSWDGSLTVYKF   40 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTE-----------------------------------------EEEEETTSEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCE-----------------------------------------EEEEECCCeEEEEEc
Confidence            445566788888888888887766                                         478889999999998


Q ss_pred             CCCC----cccCCCCCCCCCCCCCCccccCCCc--eeccCCCCCCCcceeccCCCCccc-eeee----eeEEEEecCCCe
Q psy682           98 DYAA----SIQSPSYAETPGSPPGNLPLTLDPI--LTHPTSNNNAPVPKRHLGDNFSQK-LRVR----HNCFVTTVDSRF  166 (330)
Q Consensus        98 ~~~~----~~~~~~h~~~~~~~~~~l~fs~D~~--l~~~s~~~~~~~~~~~l~~~~~~~-~~~~----~~~~~~spDg~~  166 (330)
                      +...    +....+|.    .++.++.|+++..  +++++.++.  +..|.+....... ...+    .......+++..
T Consensus        41 ~~~~~~~~~~~~~~h~----~~V~~v~f~~~~~~~l~sg~~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (342)
T d1yfqa_          41 DIQAKNVDLLQSLRYK----HPLLCCNFIDNTDLQIYVGTVQGE--ILKVDLIGSPSFQALTNNEANLGICRICKYGDDK  114 (342)
T ss_dssp             ETTTTEEEEEEEEECS----SCEEEEEEEESSSEEEEEEETTSC--EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTE
T ss_pred             cCCCcceEEEEecCCC----CCEEEEEEeCCCCCEEEEcccccc--eeeeeccccccccccccccccccccccccccccc
Confidence            6443    33444786    4678899998753  555344443  3333332211100 0001    123445667766


Q ss_pred             EEEeeccCCeEEEeeeccccccccc----ccCCCCcE-------------E--Ee---HHHHHhh---------------
Q psy682          167 LLACGFWDNSFREPFTTMYLALQEG----KFDHPNRL-------------F--SS---ISLAWKN---------------  209 (330)
Q Consensus       167 i~asg~~D~tirl~w~~~~g~l~~~----l~gH~d~V-------------i--aS---t~~lW~~---------------  209 (330)
                       +++++.|+++++ |++..++....    ...|....             +  .+   ++++|++               
T Consensus       115 -~~~~~~~~~~~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  192 (342)
T d1yfqa_         115 -LIAASWDGLIEV-IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL  192 (342)
T ss_dssp             -EEEEETTSEEEE-ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC
T ss_pred             -ccccccccccce-eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc
Confidence             455568999999 99865543222    22221110             1  11   5566654               


Q ss_pred             ------------------hccCCCcEEEEcccCc----------eee------ecCCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          210 ------------------CQRDTSDVKVHTTFGD----------LLR------SLDPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       210 ------------------SgS~Dgtvkl~~~~G~----------ll~------tL~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                                        +++.||.|++|..+..          ...      ...+|..  .|++|+|||+|.+||+|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~lasg~  270 (342)
T d1yfqa_         193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY--PVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC--CEEEEEECTTTCCEEEEE
T ss_pred             ccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccc--cceeEEecCCccEEEEEC
Confidence                              6778888888753211          111      1223333  789999999999999995


Q ss_pred             -CCeEEEEee-CCceeeeccC
Q psy682          256 -RGHIAAFTM-NGNRLRHESH  274 (330)
Q Consensus       256 -~~~~~~~s~-nG~~las~~~  274 (330)
                       |+.+++|.. +++.|.++..
T Consensus       271 ~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         271 SDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             TTSCEEEEETTTTEEEEECCC
T ss_pred             CCCEEEEEECCCCcEEEEecC
Confidence             889999976 4667776653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-17  Score=146.86  Aligned_cols=233  Identities=15%  Similarity=0.170  Sum_probs=137.6

Q ss_pred             eecccccccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccc
Q psy682           12 WRTFNLALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTY   73 (330)
Q Consensus        12 W~~~~g~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~   73 (330)
                      |+..+.++.++|+||.+.|.+ +|++||++                  .++..+.+|...|+++.|+|+           
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----------   68 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----------   68 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----------
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-----------
Confidence            777777888899999999976 57788887                  112223344444444444433           


Q ss_pred             eeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCC-Ccccee
Q psy682           74 VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQKLR  152 (330)
Q Consensus        74 ~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~-~~~~~~  152 (330)
                              .+++++.|+++++|+..............   ..+.......+ ....+..+.  .+..+..... ....+.
T Consensus        69 --------~l~s~s~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~~~~  134 (342)
T d2ovrb2          69 --------IIISGSTDRTLKVWNAETGECIHTLYGHT---STVRCMHLHEK-RVVSGSRDA--TLRVWDIETGQCLHVLM  134 (342)
T ss_dssp             --------EEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEETT-EEEEEETTS--EEEEEESSSCCEEEEEE
T ss_pred             --------ccccceecccccccccccccceecccccc---eeEeeeecccc-cccccccce--eEEEeecccccceeeee
Confidence                    24777778888999886544222211110   11111111111 122111111  1111211110 000011


Q ss_pred             ee-eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE---------EEe-----HHHHHhh--------
Q psy682          153 VR-HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL---------FSS-----ISLAWKN--------  209 (330)
Q Consensus       153 ~~-~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V---------iaS-----t~~lW~~--------  209 (330)
                      .. .......+..+. ++.++.|+++++ |+...++.+..+.+|...+         +++     ++++|+.        
T Consensus       135 ~~~~~~~~~~~~~~~-~~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~  212 (342)
T d2ovrb2         135 GHVAAVRCVQYDGRR-VVSGAYDFMVKV-WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT  212 (342)
T ss_dssp             CCSSCEEEEEECSSC-EEEEETTSCEEE-EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccceeeccccce-eeeecCCCeEEE-eecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeE
Confidence            11 123334556666 445668999999 9999899999999998877         222     7888876        


Q ss_pred             -------------------hccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEee-CCc
Q psy682          210 -------------------CQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM-NGN  267 (330)
Q Consensus       210 -------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~-nG~  267 (330)
                                         +||.||+|++|+. .++..+.+.+|.. +.....++++++..+++++ ++++++|.+ +|+
T Consensus       213 ~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             ecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCCEEEEEECCCCC
Confidence                               8899999999976 5677777776544 1233334444566888874 889999986 588


Q ss_pred             eeeecc
Q psy682          268 RLRHES  273 (330)
Q Consensus       268 ~las~~  273 (330)
                      .++++.
T Consensus       292 ~i~~~~  297 (342)
T d2ovrb2         292 FIRNLV  297 (342)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            877663

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-19  Score=167.57  Aligned_cols=105  Identities=51%  Similarity=0.946  Sum_probs=88.2

Q ss_pred             CeEEEeeccCCe------EEE-eeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCCC
Q psy682          165 RFLLACGFWDNS------FRE-PFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGFA  237 (330)
Q Consensus       165 ~~i~asg~~D~t------irl-~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~~  237 (330)
                      ++++.++|+...      +|+ |+......++.+.++|.|+++.|....|+.+-                          
T Consensus       113 ~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~~~~--------------------------  166 (304)
T d1t77a1         113 KFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ--------------------------  166 (304)
T ss_dssp             CCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH--------------------------
T ss_pred             CcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHHHhc--------------------------
Confidence            355666654433      366 88776677888999999999999888887421                          


Q ss_pred             CCcEEEeCCCccEEEEccCCeEEEEeeCCceeeeccCccccccccccccchhhhhcccCCCccccccCCcccCceecCCC
Q psy682          238 SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQELIPELFFLPEMLVNSNGYCLGKTEDNVNINNVELPPW  317 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~~~~dVkELipef~~~p~~l~n~~~~~~g~~~~g~~v~~V~LP~w  317 (330)
                                                         ....+++|||||||++||||+|.|+++||++++|+.|+||+||+|
T Consensus       167 -----------------------------------~~~~d~~EliPEFf~~Pe~f~n~n~~~~g~~~~g~~v~DV~LP~W  211 (304)
T d1t77a1         167 -----------------------------------RDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPW  211 (304)
T ss_dssp             -----------------------------------HCTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTT
T ss_pred             -----------------------------------ccccchhhcCchhhcChHhhhhccccccccccCCCcccccccCCc
Confidence                                               123579999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcC
Q psy682          318 ASSPEQFVRINRM  330 (330)
Q Consensus       318 a~s~~~fi~~~r~  330 (330)
                      |++|++||++||+
T Consensus       212 a~s~~~FV~~~R~  224 (304)
T d1t77a1         212 AKTSEEFVHINRL  224 (304)
T ss_dssp             CSSHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHH
Confidence            9999999999994

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=7.4e-17  Score=143.28  Aligned_cols=227  Identities=11%  Similarity=-0.034  Sum_probs=141.5

Q ss_pred             CcccCCCcEEEeecccccccceeecC--CCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSC--DSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH--~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      ++++.|++|++||+++++.+.+++.+  ...+.+++|||||++                                     
T Consensus         5 vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~-------------------------------------   47 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-------------------------------------   47 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-------------------------------------
T ss_pred             EEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCE-------------------------------------
Confidence            47889999999999999999998654  456789999999988                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcccC-CCCCCCC-CCCCCCccccCCCcee-ccCCCCCCC----------cceeccCC
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASIQS-PSYAETP-GSPPGNLPLTLDPILT-HPTSNNNAP----------VPKRHLGD  145 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~~~-~~~~~~l~fs~D~~l~-~~s~~~~~~----------~~~~~l~~  145 (330)
                         +.|+++.+++|.+|+...+..... ..+.... ......+.|+||+++. .+..+....          ...+....
T Consensus        48 ---l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~  124 (337)
T d1pbyb_          48 ---AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             ---EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             ---EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC
Confidence               346777888999999976654332 2222110 1235579999999943 321111000          00111100


Q ss_pred             -CCccceeee--eeEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE----------------------E
Q psy682          146 -NFSQKLRVR--HNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL----------------------F  200 (330)
Q Consensus       146 -~~~~~~~~~--~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V----------------------i  200 (330)
                       .....+...  ..+++|+|||+++++++   +.+++ |+..++++...+..+....                      .
T Consensus       125 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (337)
T d1pbyb_         125 LSRRKAFEAPRQITMLAWARDGSKLYGLG---RDLHV-MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             TEEEEEEECCSSCCCEEECTTSSCEEEES---SSEEE-EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CeEEEeccccCCceEEEEcCCCCEEEEEc---CCcce-eeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence             000011111  24688999999977654   34567 8877766554433322110                      0


Q ss_pred             Ee-----------------HHHHHhh----------------------------hccCCCcEEEEcc-cCceeeecCCCC
Q psy682          201 SS-----------------ISLAWKN----------------------------CQRDTSDVKVHTT-FGDLLRSLDPPS  234 (330)
Q Consensus       201 aS-----------------t~~lW~~----------------------------SgS~Dgtvkl~~~-~G~ll~tL~~h~  234 (330)
                      ..                 .+.+|+.                            ..+.|++|++|+. +|++++++.. .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~  279 (337)
T d1pbyb_         201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL-P  279 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEEC-S
T ss_pred             eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEcC-C
Confidence            00                 1111111                            2234688999976 6888888864 3


Q ss_pred             CCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC-CceeeeccC
Q psy682          235 GFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESH  274 (330)
Q Consensus       235 ~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n-G~~las~~~  274 (330)
                      .  .+.+|+|||||+.|+.++ ++++..|... ++.++++..
T Consensus       280 ~--~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         280 H--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             S--CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             C--CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            4  789999999999987774 8889999754 677776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.3e-16  Score=139.44  Aligned_cols=229  Identities=10%  Similarity=0.060  Sum_probs=156.2

Q ss_pred             ccccceeecCCCceeEEEeCC------CCCc---CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcC
Q psy682           17 LALLYAFPSCDSSVRSLALSH------DQKY---SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTAN   87 (330)
Q Consensus        17 g~~l~tl~gH~~~V~svafSp------dg~~---~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~   87 (330)
                      ++++++|+||...|.+|+|||      ||.+   .......+|...|..+.|+++..+                  ++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~------------------~s~s   64 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY------------------SSIS   64 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC------------------EEEE
T ss_pred             cceeEEECCCCCceEEEEECcEEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeE------------------EEEe
Confidence            578999999999999999999      5555   222334578888889999887764                  6778


Q ss_pred             CcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceecc-CCCCccceeeeeeEEEEecCCCe
Q psy682           88 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL-GDNFSQKLRVRHNCFVTTVDSRF  166 (330)
Q Consensus        88 ~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~spDg~~  166 (330)
                      .|.+|++|+......          ...+..+.+.+|+.+...+.+.  ....+.. .+...+.+.....+.+++|+++.
T Consensus        65 ~D~~v~~w~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (287)
T d1pgua2          65 WDDTLKVNGITKHEF----------GSQPKVASANNDGFTAVLTNDD--DLLILQSFTGDIIKSVRLNSPGSAVSLSQNY  132 (287)
T ss_dssp             TTTEEEETTEEEEEC----------SSCEEEEEECSSSEEEEEETTS--EEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred             ecccccccccccccc----------ccceeeeeeccCCceEEEeecc--cceeeeccceeeeeeccccceeeeeeccCcc
Confidence            889999999854311          1245678999999855422222  2333322 12223334444567789999999


Q ss_pred             EEEeeccCCeEEEeeecccccccccc-cCCCCcE--EE-e---HHHHHhhhccCCCcEEEEcc-cCceee-ecCCCCCCC
Q psy682          167 LLACGFWDNSFREPFTTMYLALQEGK-FDHPNRL--FS-S---ISLAWKNCQRDTSDVKVHTT-FGDLLR-SLDPPSGFA  237 (330)
Q Consensus       167 i~asg~~D~tirl~w~~~~g~l~~~l-~gH~d~V--ia-S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~-tL~~h~~~~  237 (330)
                      +++++..++++++ |++...+....+ ..|...|  ++ +   ...+   +|+.||.|++|+. +++.+. .+.+|.+  
T Consensus       133 ~~v~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~g~~dg~i~i~d~~~~~~~~~~~~~h~~--  206 (287)
T d1pgua2         133 VAVGLEEGNTIQV-FKLSDLEVSFDLKTPLRAKPSYISISPSETYIA---AGDVMGKILLYDLQSREVKTSRWAFRTS--  206 (287)
T ss_dssp             EEEEETTTSCEEE-EETTEEEEEEECSSCCSSCEEEEEECTTSSEEE---EEETTSCEEEEETTTTEEEECCSCCCSS--
T ss_pred             eeeeccccceeee-eeccccceeeeeeeccCCceeEEEeccCccccc---cccccccccceeeccccccccccccccc--
Confidence            7777765678999 998766554433 4466655  21 2   3333   8999999999976 566544 4788888  


Q ss_pred             CCcEEEeCCCc----------cEEEEcc-CCeEEEEeeC--CceeeeccCc-cccccc
Q psy682          238 SPESVVMSREG----------VIVVNYE-RGHIAAFTMN--GNRLRHESHN-DNLQEL  281 (330)
Q Consensus       238 ~v~~v~fS~dG----------~~l~s~~-~~~~~~~s~n--G~~las~~~~-~dVkEL  281 (330)
                      +|.+++|+|++          .++|+|+ +++++.|+++  ++.+..+..| +.|..+
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v  264 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL  264 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred             ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEE
Confidence            99999998755          5788885 7889999863  5566665544 334443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=9.7e-17  Score=143.29  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             CcccCCCcEEEeeccccccccee--ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccC
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAF--PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHM   78 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl--~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~   78 (330)
                      |+++.|++|++|++++...+..+  -.|.+.|.+|+|||||++                                     
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~-------------------------------------   50 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY-------------------------------------   50 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSE-------------------------------------
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCE-------------------------------------
Confidence            46789999999999754333333  368899999999999988                                     


Q ss_pred             CcEEEEEcCCcceEEEeCCCCCCcc-cCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCc-cceee--
Q psy682           79 PSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFS-QKLRV--  153 (330)
Q Consensus        79 ~~~v~vS~~~~~tv~lW~~~~~~~~-~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~-~~~~~--  153 (330)
                         ..|++..+++|++|+.+..... ...++.. ....+.++.|+|||+ ++++..++ ..+..+....... .....  
T Consensus        51 ---L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~~p~~l~~spDg~~l~v~~~~~-~~v~~~~~~~~~~~~~~~~~~  125 (333)
T d1ri6a_          51 ---LYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPGSLTHISTDHQGQFVFVGSYNA-GNVSVTRLEDGLPVGVVDVVE  125 (333)
T ss_dssp             ---EEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSSCCSEEEECTTSSEEEEEETTT-TEEEEEEEETTEEEEEEEEEC
T ss_pred             ---EEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCCCceEEEEcCCCCEEeecccCC-CceeeeccccccceecccccC
Confidence               2366677888999987644322 2222221 112456799999999 44422222 2222222111110 00110  


Q ss_pred             ---eeeEEEEecCCCeEEEeeccCCeEEEeeeccc
Q psy682          154 ---RHNCFVTTVDSRFLLACGFWDNSFREPFTTMY  185 (330)
Q Consensus       154 ---~~~~~~~spDg~~i~asg~~D~tirl~w~~~~  185 (330)
                         ...+++++||+++++.+...+..|++ |+...
T Consensus       126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~-~~~~~  159 (333)
T d1ri6a_         126 GLDGCHSANISPDNRTLWVPALKQDRICL-FTVSD  159 (333)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTEEEE-EEECT
T ss_pred             CCccceEEEeeecceeeeccccccceeeE-EEecc
Confidence               12467899999998988888888988 87654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=5.2e-15  Score=131.60  Aligned_cols=245  Identities=8%  Similarity=-0.038  Sum_probs=140.9

Q ss_pred             CcccCCCcEEEeecccccccceee-cCCCceeEEEeCCCCCc--------Cccee-----------eee-c-----CccE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKY--------SPMMF-----------STV-L-----DDVC   54 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~--------~~l~~-----------~~~-~-----~d~~   54 (330)
                      |+++.|++|.+||+.+++.+.+++ .|...+.+|+|||||+.        ..+..           ... .     ....
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~   91 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSM   91 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCce
Confidence            468899999999999999999998 56778999999999997        00111           110 0     1123


Q ss_pred             EEEEeCCCCCeeEeeeccce---------------------------------------eccCCcEEEEEcCCcceEEEe
Q psy682           55 MSLKFPSNSPICHVTANTYV---------------------------------------TLHMPSVVTVTANHQFAINRW   95 (330)
Q Consensus        55 ~~v~Fs~~~~v~~~~~~~~~---------------------------------------~~~~~~~v~vS~~~~~tv~lW   95 (330)
                      ..++|+|||..+|++.....                                       ....+..+.++.+   .+++|
T Consensus        92 ~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  168 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKM  168 (346)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS---SEEEE
T ss_pred             EEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCC---cceEE
Confidence            46789999999988753220                                       1112222222221   13555


Q ss_pred             CCCCCCc-ccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccC
Q psy682           96 NPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWD  174 (330)
Q Consensus        96 ~~~~~~~-~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D  174 (330)
                      +...... .....+     ..+..+.++||+..........             ...........+.++... +.++..+
T Consensus       169 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~~~  229 (346)
T d1jmxb_         169 DVKTGKYTVALPLR-----NWNRKGYSAPDVLYFWPHQSPR-------------HEFSMLYTIARFKDDKQD-PATADLL  229 (346)
T ss_dssp             CTTTCCEEEEECST-----TCCCTTBCCCBCCCCCCCCCTT-------------CEEEEEEEEEEC--------CCCEEE
T ss_pred             EccCCCEEEEEecC-----CCccceEEeccccEEEEEecCC-------------CceEeeeeeeeeccCcee-EeeccCC
Confidence            5543332 222222     2344566666665321001000             011111122223344433 5556677


Q ss_pred             CeEEEeeecccccccc-cccCCCCcEE---Ee--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCC
Q psy682          175 NSFREPFTTMYLALQE-GKFDHPNRLF---SS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSRE  247 (330)
Q Consensus       175 ~tirl~w~~~~g~l~~-~l~gH~d~Vi---aS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~d  247 (330)
                      .++.+ |+..+++... ...+|...+.   .+  -..+.  ++ .++.|++|+. +|++++++.. ..  .|.+|+||||
T Consensus       230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~v~d~~~~~~~~~~~~-~~--~~~~va~s~D  302 (346)
T d1jmxb_         230 YGYLS-VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI--YG-VLNRLAKYDLKQRKLIKAANL-DH--TYYCVAFDKK  302 (346)
T ss_dssp             EEEEE-EETTTCCEEEEEEEECSSCEEEEEECSSCTTEE--EE-EESEEEEEETTTTEEEEEEEC-SS--CCCEEEECSS
T ss_pred             ceEEE-EECCCCceEEEEeecccceeEEEEEeCCCCEEE--Ee-cCCeEEEEECCCCcEEEEEcC-CC--CEEEEEEcCC
Confidence            78888 9888776543 3445655542   11  11110  22 3467999975 7999998864 23  6999999999


Q ss_pred             ccEEEEcc-CCeEEEEeeC-CceeeeccC
Q psy682          248 GVIVVNYE-RGHIAAFTMN-GNRLRHESH  274 (330)
Q Consensus       248 G~~l~s~~-~~~~~~~s~n-G~~las~~~  274 (330)
                      |+.|+.++ ++.+..|... ++.+++...
T Consensus       303 G~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            99998885 7889999765 666666653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-14  Score=122.31  Aligned_cols=211  Identities=11%  Similarity=0.147  Sum_probs=130.5

Q ss_pred             cccceeecCCCceeEEEeCCCCCc------------------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682           18 ALLYAFPSCDSSVRSLALSHDQKY------------------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus        18 ~~l~tl~gH~~~V~svafSpdg~~------------------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      +.+..+.+|...|++++|  ||++                  .++..+.+|++.|.++.|  |+.               
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~---------------   66 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER---------------   66 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS---------------
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccc---------------
Confidence            455667889999998766  6666                  222334455555555544  333               


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccc-cCCCceeccCCCCCCCcceeccCCCCc----cceeee
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVR  154 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~f-s~D~~l~~~s~~~~~~~~~~~l~~~~~----~~~~~~  154 (330)
                        .++|++.|++|++|+...........+.     ......+ ..+..++++..++.  ...+.......    ..+..+
T Consensus        67 --~l~s~s~D~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  137 (293)
T d1p22a2          67 --VIITGSSDSTVRVWDVNTGEMLNTLIHH-----CEAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGH  137 (293)
T ss_dssp             --EEEEEETTSCEEEEESSSCCEEEEECCC-----CSCEEEEECCTTEEEEEETTSC--EEEEECSSSSCCEEEEEECCC
T ss_pred             --eeeccccccccccccccccccccccccc-----ccccccccccccceeecccccc--eeEeecccccccccccccccc
Confidence              3588889999999999766543332221     1111222 22223443222222  22222211110    011111


Q ss_pred             e-eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEE-e---HHHHHhhhccCCCcEEEEcc-cCceee
Q psy682          155 H-NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFS-S---ISLAWKNCQRDTSDVKVHTT-FGDLLR  228 (330)
Q Consensus       155 ~-~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~Via-S---t~~lW~~SgS~Dgtvkl~~~-~G~ll~  228 (330)
                      . ......+....++ +++.|+++++ |+..+++++..+.+|...|.. +   ...+   +|+.||+|+||+. +++.++
T Consensus       138 ~~~v~~~~~~~~~~~-~~s~d~~i~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         138 RAAVNVVDFDDKYIV-SASGDRTIKV-WNTSTCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             SSCEEEEEEETTEEE-EEETTSEEEE-EETTTCCEEEEEECCSSCEEEEEEETTEEE---EEETTSCEEEEETTTCCEEE
T ss_pred             ccccccceecccccc-cccCCCceee-ecCCCCcEEEEEcccccccccccCCCCeEE---EecCCCEEEEEecccceeee
Confidence            1 1222344555644 4557999999 999999999999999988732 1   3333   8999999999975 789999


Q ss_pred             ecCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEeeC
Q psy682          229 SLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  265 (330)
Q Consensus       229 tL~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s~n  265 (330)
                      .+.+|..  .|.  .+++++..|++++ ++.+++|...
T Consensus       213 ~~~~~~~--~v~--~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         213 VLEGHEE--LVR--CIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EECCCSS--CEE--EEECCSSEEEEEETTSCEEEEEHH
T ss_pred             eecccce--eee--eccccceEEEEEcCCCEEEEEECC
Confidence            9999877  554  5778899999885 8899999754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.56  E-value=7.2e-14  Score=127.40  Aligned_cols=231  Identities=8%  Similarity=-0.067  Sum_probs=140.8

Q ss_pred             CCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEE
Q psy682            5 DKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTV   84 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~v   84 (330)
                      .+++|.+||..+|+.+.++.++...  .++|||||+.                        +|+....       .-...
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~------------------------l~va~~~-------~~~~~   91 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSE------------------------FALASTS-------FSRIA   91 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCE------------------------EEEEeec-------CCccc
Confidence            4567889999999999998877654  6888888877                        2221110       00123


Q ss_pred             EcCCcceEEEeCCCCCCcccCC-CCCC---CCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee---ee
Q psy682           85 TANHQFAINRWNPDYAASIQSP-SYAE---TPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR---HN  156 (330)
Q Consensus        85 S~~~~~tv~lW~~~~~~~~~~~-~h~~---~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~---~~  156 (330)
                      .+..++.|++|+.......... .+..   .+......+.|++|++ +.....+.......+....   .....+   ..
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~  168 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG---SSDDQLLSSPT  168 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC---CeEEEEeccce
Confidence            4566788999998766543322 2221   1112345688999998 3332222222222222111   111111   25


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcE-----------------E-Ee---HHHHHhh------
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------------F-SS---ISLAWKN------  209 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------------i-aS---t~~lW~~------  209 (330)
                      +++++|||+.++++.+.|+++.+ |+...+++......+....                 + .+   ++..|+.      
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  247 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAK-TDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT  247 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEE-EEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEE
Confidence            78899999998888889999999 9987776554433222111                 0 00   1111111      


Q ss_pred             ---------------------------------------------hccCCCcEEEEc-ccCceeeecCCCCCCCCCcEEE
Q psy682          210 ---------------------------------------------CQRDTSDVKVHT-TFGDLLRSLDPPSGFASPESVV  243 (330)
Q Consensus       210 ---------------------------------------------SgS~Dgtvkl~~-~~G~ll~tL~~h~~~~~v~~v~  243 (330)
                                                                   ....++++.+|+ .+|+.++++... .  .+..++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~--~~~~~a  324 (373)
T d2madh_         248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-H--DVDAIS  324 (373)
T ss_pred             EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-C--CeeEEE
Confidence                                                         344566778875 489999988753 3  689999


Q ss_pred             eCCCccE--EEEc-cCCeEEEEee-CCceeeeccCc
Q psy682          244 MSREGVI--VVNY-ERGHIAAFTM-NGNRLRHESHN  275 (330)
Q Consensus       244 fS~dG~~--l~s~-~~~~~~~~s~-nG~~las~~~~  275 (330)
                      |||||+.  ++++ .++.++.|.. +|+.++++...
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            9999984  3455 5788999954 59988888643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=7e-15  Score=131.81  Aligned_cols=162  Identities=4%  Similarity=-0.168  Sum_probs=114.7

Q ss_pred             ceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCCCCccceeee---eeEEEEecCCC
Q psy682           90 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDNFSQKLRVR---HNCFVTTVDSR  165 (330)
Q Consensus        90 ~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~spDg~  165 (330)
                      +.|.+|+.+++..++. +|.+    .+.++.|||||+ +++++.+....+..+.+.....+.+..+   ..+++|+|||+
T Consensus        24 g~v~v~d~~~~~~~~~-~~~~----~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~   98 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKV-PEPL----RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK   98 (360)
T ss_dssp             TEEEEECTTSSBEEEC-SCCS----CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSS
T ss_pred             CeEEEEECCCCcEEEc-cCCC----CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeeccccc
Confidence            4689999998887775 6764    567899999999 5543333222344555433322223323   25888999999


Q ss_pred             eEEEeeccCCeEEEeeecccccccccccCCCCcE-----------EEe-----HHHHHhhhccCCCcEEEEcccCceeee
Q psy682          166 FLLACGFWDNSFREPFTTMYLALQEGKFDHPNRL-----------FSS-----ISLAWKNCQRDTSDVKVHTTFGDLLRS  229 (330)
Q Consensus       166 ~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~V-----------iaS-----t~~lW~~SgS~Dgtvkl~~~~G~ll~t  229 (330)
                      +|+ +++.|+.+++ |+.++++....+..|...+           ++.     +...   +++.++++++|+..+.....
T Consensus        99 ~l~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          99 FAV-VANDRFEIMT-VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET---DGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             EEE-EEETTSEEEE-EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT---CSCCEEEEEEEETTTTEEEE
T ss_pred             ccc-eecccccccc-ccccccceeeeeecccccccchhhccceeeeeeeccccccce---eeccccceeeeccccCceee
Confidence            955 4557999999 9999998888887777654           211     2222   68889999999887666666


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEcc-CCeEEEEe
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  263 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~~-~~~~~~~s  263 (330)
                      +..|..  .+..++|||||+.|++++ ++.+..|.
T Consensus       174 ~~~~~~--~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         174 ATTENS--HDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             CSCSSS--BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             eccccc--ccccccccCCCCEEEEEeCCCceEccc
Confidence            666666  789999999999999885 56666664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.52  E-value=2.7e-14  Score=135.44  Aligned_cols=261  Identities=11%  Similarity=-0.030  Sum_probs=138.0

Q ss_pred             CcccCCCcEEEeecccccccce-----eecCCCceeEEEeCCCCCc--------C-----------cceeeeecCccEEE
Q psy682            1 MSGGDKGIVEVWRTFNLALLYA-----FPSCDSSVRSLALSHDQKY--------S-----------PMMFSTVLDDVCMS   56 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~t-----l~gH~~~V~svafSpdg~~--------~-----------~l~~~~~~~d~~~~   56 (330)
                      ++++.|++|++||+++++...+     ..+|...+.+++|||||+.        .           +.....++...+..
T Consensus        77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence            4678899999999998875433     4589999999999999997        0           01111122222222


Q ss_pred             EEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCc--ccCCCCCCCCCCCCCCccccCCCceeccCCCC
Q psy682           57 LKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS--IQSPSYAETPGSPPGNLPLTLDPILTHPTSNN  134 (330)
Q Consensus        57 v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~--~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~  134 (330)
                      ..|++++...++...     .....+.++......+-.+.......  ....++.    ..+..+.|+||+++...+...
T Consensus       157 ~~~~~~~~~~~i~~s-----~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         157 QTYHPEPRVAAIIAS-----HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA----PFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             CCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC----SSEEEEEECTTSCEEEEEETT
T ss_pred             eeecCCCceeEEEEC-----CCCCEEEEecCCCCeEEEEEeccccceeeEEeccC----CccEeeeECCCCcEEEeeeec
Confidence            334444433322211     11112223333334344444322211  1112333    345579999999944322222


Q ss_pred             CCCcceeccCCC-Cccceee-----eeeEEEEecC--CCeEEEeeccCCeEEEeeecc-------cccccccccCCCCcE
Q psy682          135 NAPVPKRHLGDN-FSQKLRV-----RHNCFVTTVD--SRFLLACGFWDNSFREPFTTM-------YLALQEGKFDHPNRL  199 (330)
Q Consensus       135 ~~~~~~~~l~~~-~~~~~~~-----~~~~~~~spD--g~~i~asg~~D~tirl~w~~~-------~g~l~~~l~gH~d~V  199 (330)
                      ............ .......     ...+..+..+  +....+..+.|+.+.+ |...       .+++..++.+|...|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~-~~~~~~~~~~~~~~~~~~l~g~~~~v  306 (426)
T d1hzua2         228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL-IGTDPKNHPQYAWKKVAELQGQGGGS  306 (426)
T ss_dssp             CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEE-EECCTTTCTTTBTSEEEEEECSSSCC
T ss_pred             ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEE-eeccccccccccceEeEEEecCCCce
Confidence            222222221110 0000000     0012222222  2233444555666666 6553       346778899998876


Q ss_pred             --EE-e--HHHHHh-----hhccCCCcEEEEcc-cCceeeecCC---------CCCCCCCcEEEeCCCccEE-EEc----
Q psy682          200 --FS-S--ISLAWK-----NCQRDTSDVKVHTT-FGDLLRSLDP---------PSGFASPESVVMSREGVIV-VNY----  254 (330)
Q Consensus       200 --ia-S--t~~lW~-----~SgS~Dgtvkl~~~-~G~ll~tL~~---------h~~~~~v~~v~fS~dG~~l-~s~----  254 (330)
                        ++ +  -..+|.     -+|+.|+||+||+. +|+.++++.+         |..  +|..++|||||+.| +|.    
T Consensus       307 ~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~--rv~~~~fSpDGk~i~vs~~~~~  384 (426)
T d1hzua2         307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK--RVVQPEYNKRGDEVWFSVWNGK  384 (426)
T ss_dssp             CCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC--CEEEEEECSSSSEEEEEECCCT
T ss_pred             eEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCc--cEEEEEECCCCCEEEEEEecCC
Confidence              21 1  222331     16788999999975 7887776532         333  79999999999855 442    


Q ss_pred             -cCCeEEEEe-eCCceeeecc
Q psy682          255 -ERGHIAAFT-MNGNRLRHES  273 (330)
Q Consensus       255 -~~~~~~~~s-~nG~~las~~  273 (330)
                       .++.+++|. ..+|.++...
T Consensus       385 ~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         385 NDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             TSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEEEECCCCeEEEEEC
Confidence             367788884 4455555544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=1.4e-12  Score=117.30  Aligned_cols=237  Identities=11%  Similarity=0.019  Sum_probs=129.0

Q ss_pred             ccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEE
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVV   82 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v   82 (330)
                      +..+++|.+||..+|+++.+++.+...  .++|||||+.                        +|+......       .
T Consensus        24 ~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~------------------------l~v~~~~~~-------~   70 (355)
T d2bbkh_          24 FAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSF------------------------IAHASTVFS-------R   70 (355)
T ss_dssp             GCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC------------------------EEEEEEEEE-------E
T ss_pred             CCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCE------------------------EEEEeCCCc-------c
Confidence            345678999999999999999877554  6888888887                        222211000       0


Q ss_pred             EEEcCCcceEEEeCCCCCCcccCC----CCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceeccCC-CCccceee---
Q psy682           83 TVTANHQFAINRWNPDYAASIQSP----SYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGD-NFSQKLRV---  153 (330)
Q Consensus        83 ~vS~~~~~tv~lW~~~~~~~~~~~----~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~l~~-~~~~~~~~---  153 (330)
                      ...+++++.|++|+..........    .+...+...+..+.|++|++ +..++.+.......+.... ...+++..   
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             ccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence            123456788999998766543321    23333344566789999999 3332222222222222111 00011111   


Q ss_pred             -------eeeEEEEecCCCeEEEeeccCCeEEEeeecccccccccc------cCCCCc-E-EEe---HHHHHhh------
Q psy682          154 -------RHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK------FDHPNR-L-FSS---ISLAWKN------  209 (330)
Q Consensus       154 -------~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l------~gH~d~-V-iaS---t~~lW~~------  209 (330)
                             ....+++++||+.++.....+.++.+ +.....+.....      ....+. + +++   ++.+|+.      
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCCCeEEE-EecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence                   01245677777766555444444444 333222111000      000000 0 000   1111111      


Q ss_pred             -------------------------hcc--------------------CCCcEEEEcc-cCceeeecCCCCCCCCCcEEE
Q psy682          210 -------------------------CQR--------------------DTSDVKVHTT-FGDLLRSLDPPSGFASPESVV  243 (330)
Q Consensus       210 -------------------------SgS--------------------~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~  243 (330)
                                               ..+                    .+.+|.+|+. +|+.++++..+ .  .+.+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~--~~~~~a  306 (355)
T d2bbkh_         230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-H--EIDSIN  306 (355)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E--EECEEE
T ss_pred             EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-C--CEEEEE
Confidence                                     222                    2346778864 69999888753 3  589999


Q ss_pred             eCCCcc--EEEEc-cCCeEEEEee-CCceeeeccCcc
Q psy682          244 MSREGV--IVVNY-ERGHIAAFTM-NGNRLRHESHND  276 (330)
Q Consensus       244 fS~dG~--~l~s~-~~~~~~~~s~-nG~~las~~~~~  276 (330)
                      |||||+  .+|++ .+++|..|.. .|+.++++....
T Consensus       307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence            999998  34555 4789999965 899888886443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.42  E-value=8.3e-13  Score=115.31  Aligned_cols=204  Identities=13%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             cccCCCcEEEeecccccccceeecCCCceeEEEeCCCCCc--------Cccee----------eeecCccEEEEEeCCCC
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY--------SPMMF----------STVLDDVCMSLKFPSNS   63 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~--------~~l~~----------~~~~~d~~~~v~Fs~~~   63 (330)
                      +++.+++|++||+.+++.+.+++.|.. +.+++|++||+.        .....          .-.+......+.|+||+
T Consensus        49 ~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  127 (301)
T d1l0qa2          49 ANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG  127 (301)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCC
Confidence            567889999999999999999998875 689999999987        00000          11233445667777777


Q ss_pred             CeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-eeccCCCCCCCcceec
Q psy682           64 PICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRH  142 (330)
Q Consensus        64 ~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~~~s~~~~~~~~~~~  142 (330)
                      ..+                .++.+.+.++.+|+...........+.    ..+..+.+++|+. +.++..+. .....+.
T Consensus       128 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  186 (301)
T d1l0qa2         128 KKL----------------YVTNNGDKTVSVINTVTKAVINTVSVG----RSPKGIAVTPDGTKVYVANFDS-MSISVID  186 (301)
T ss_dssp             SEE----------------EEEETTTTEEEEEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred             Cee----------------eeeeccccceeeeeccccceeeecccC----CCceEEEeeccccceeeecccc-ccccccc
Confidence            764                466677888899988665533333222    2356789999998 44322221 1111222


Q ss_pred             cC-CCCccceeee--eeEEEEecCCCeEEEee--ccCCeEEEeeecccccccccccCCCCcE---EEe---HHHHHhhhc
Q psy682          143 LG-DNFSQKLRVR--HNCFVTTVDSRFLLACG--FWDNSFREPFTTMYLALQEGKFDHPNRL---FSS---ISLAWKNCQ  211 (330)
Q Consensus       143 l~-~~~~~~~~~~--~~~~~~spDg~~i~asg--~~D~tirl~w~~~~g~l~~~l~gH~d~V---iaS---t~~lW~~Sg  211 (330)
                      .. ......+...  ...+++++|++.++.++  ..+++|++ |++.++++...+..+...-   +..   .+.+   ++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v-~D~~t~~~~~~~~~~~~~~~va~spdg~~l~v---a~  262 (301)
T d1l0qa2         187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM-IDTGTNKITARIPVGPDPAGIAVTPDGKKVYV---AL  262 (301)
T ss_dssp             TTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE-EETTTTEEEEEEECCSSEEEEEECTTSSEEEE---EE
T ss_pred             ccceeeeecccccCCcceeeccccccccccccccceeeeeee-eecCCCeEEEEEcCCCCEEEEEEeCCCCEEEE---EE
Confidence            11 1111111111  24678999999876654  34578999 9999999888776665532   222   2323   78


Q ss_pred             cCCCcEEEEcc-cCceeeecC
Q psy682          212 RDTSDVKVHTT-FGDLLRSLD  231 (330)
Q Consensus       212 S~Dgtvkl~~~-~G~ll~tL~  231 (330)
                      +.|++|++|+. +|++++++.
T Consensus       263 ~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         263 SFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEEe
Confidence            89999999975 899999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=3.9e-13  Score=129.11  Aligned_cols=190  Identities=7%  Similarity=0.025  Sum_probs=123.3

Q ss_pred             eecCCCceeEEEeCCCCCc--------CcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEE
Q psy682           23 FPSCDSSVRSLALSHDQKY--------SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINR   94 (330)
Q Consensus        23 l~gH~~~V~svafSpdg~~--------~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~l   94 (330)
                      ...+...+..|+.|+||++        ..+..++.+ ..+..++|||||+.+                 +++++|++|++
T Consensus        26 ~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l-----------------~~~s~dg~v~~   87 (432)
T d1qksa2          26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYL-----------------FVIGRDGKVNM   87 (432)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEE-----------------EEEETTSEEEE
T ss_pred             ecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEE-----------------EEEcCCCCEEE
Confidence            4455567788999999999        233444444 358999999999986                 55677899999


Q ss_pred             eCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeeeEEEEecCCCeEEEeeccC
Q psy682           95 WNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWD  174 (330)
Q Consensus        95 W~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~spDg~~i~asg~~D  174 (330)
                      |+.+....                       +.          ......+..    -..-..+.+|||||++|+++++.|
T Consensus        88 ~d~~t~~~-----------------------~~----------~~~i~~~~~----~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          88 IDLWMKEP-----------------------TT----------VAEIKIGSE----ARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             EETTSSSC-----------------------CE----------EEEEECCSE----EEEEEECCSTTCTTTEEEEEEEET
T ss_pred             EEeeCCCc-----------------------eE----------EEEEecCCC----CCCeEEecccCCCCCEEEEEcCCC
Confidence            99854310                       00          011111110    011112345789999999999999


Q ss_pred             CeEEEeeecccccccccccCCCCcE--------------EEe-HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCC
Q psy682          175 NSFREPFTTMYLALQEGKFDHPNRL--------------FSS-ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFAS  238 (330)
Q Consensus       175 ~tirl~w~~~~g~l~~~l~gH~d~V--------------iaS-t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~  238 (330)
                      +++++ |+.+++++++.+.+|...+              ..| --..|.++.+.+++|.+|+. +++.++..+-+.+ ..
T Consensus       131 ~~v~i-~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~  208 (432)
T d1qksa2         131 PQYVI-MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RF  208 (432)
T ss_dssp             TEEEE-EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SS
T ss_pred             CeEEE-EeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-Cc
Confidence            99999 9999999887776654332              122 01112226778899999865 5665554332222 26


Q ss_pred             CcEEEeCCCccEEEEc--cCCeEEEEeeCCcee
Q psy682          239 PESVVMSREGVIVVNY--ERGHIAAFTMNGNRL  269 (330)
Q Consensus       239 v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~l  269 (330)
                      +..++|+|||+.++.+  +...+..+......+
T Consensus       209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             cccceECCCCCEEEEeccccceEEEeecccceE
Confidence            8999999999977666  355666666554444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=1.3e-12  Score=124.47  Aligned_cols=88  Identities=9%  Similarity=0.032  Sum_probs=60.7

Q ss_pred             CCCcEEEeecccccccc-----eeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCC
Q psy682            5 DKGIVEVWRTFNLALLY-----AFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMP   79 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~-----tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~   79 (330)
                      .|+.|.+|++.+|+...     +|..|...|.+++|||||+.    .           .|..+..-              
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~----i-----------~~~~~~~~--------------   84 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF----I-----------LLEYNYVK--------------   84 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE----E-----------EEEEEEEE--------------
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCE----E-----------EEEECCcc--------------
Confidence            57889999999988654     45566688899999998887    0           01100000              


Q ss_pred             cEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc-ee
Q psy682           80 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LT  128 (330)
Q Consensus        80 ~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~-l~  128 (330)
                         .---+..+.+.+|+..++.+..+.+|.+    .+....|||||+ ++
T Consensus        85 ---~~r~s~~~~~~l~d~~~~~~~~l~~~~~----~~~~~~~SPDG~~ia  127 (470)
T d2bgra1          85 ---QWRHSYTASYDIYDLNKRQLITEERIPN----NTQWVTWSPVGHKLA  127 (470)
T ss_dssp             ---CSSSCEEEEEEEEETTTTEECCSSCCCT----TEEEEEECSSTTCEE
T ss_pred             ---eeeeccCceEEEEECCCCcccccccCCc----cccccccccCcceee
Confidence               0001335568899999888888777763    566799999999 44

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.21  E-value=1.1e-11  Score=121.24  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=66.7

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc---CCCCcEEE--------------eHHHHHhhhccCCCcEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF---DHPNRLFS--------------SISLAWKNCQRDTSDVK  218 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~---gH~d~Via--------------St~~lW~~SgS~Dgtvk  218 (330)
                      ..+++||||+|++++|..|+++.+ |++++  +.+.+.   ++.+.|.+              ..-.+|. |.+.|.+|.
T Consensus       261 hGv~vSPDGkyl~~~~~~~~tvsv-~d~~k--~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt-s~~~ds~v~  336 (441)
T d1qnia2         261 HGLNTSPDGKYFIANGKLSPTVSV-IAIDK--LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT-TLFIDSQVC  336 (441)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEE-EEGGG--HHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE-EETTTTEEE
T ss_pred             cCceECCCCCEEEEeCCcCCcEEE-EEeeh--hhhHhhccCCcceEEEeecccccCcccceecCCceEEE-cccccceEE
Confidence            468899999999999999999999 99964  333333   33334411              1222333 778888888


Q ss_pred             EEccc-------Cc----eeeec-----CCCCCCCCCcEEEeCCCccEEEEcc
Q psy682          219 VHTTF-------GD----LLRSL-----DPPSGFASPESVVMSREGVIVVNYE  255 (330)
Q Consensus       219 l~~~~-------G~----ll~tL-----~~h~~~~~v~~v~fS~dG~~l~s~~  255 (330)
                      .|+..       |+    .+..+     .||..  .+.+++|+|||+.|+|++
T Consensus       337 kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~--~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         337 KWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH--ASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE--ETTTTSTTCCCCEEEEEE
T ss_pred             EeccchhhhhhccCCCceeEeccccccCCCCCc--cccccccCCCCcEEEecC
Confidence            89742       22    23333     57777  899999999999999993

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=7.3e-11  Score=108.59  Aligned_cols=234  Identities=7%  Similarity=-0.022  Sum_probs=130.9

Q ss_pred             cCCCc--EEEeecccccccceeecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeeccceeccCCcE
Q psy682            4 GDKGI--VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSV   81 (330)
Q Consensus         4 s~d~~--V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~   81 (330)
                      +.+++  |.+||..+++++.+..++...  .++|||||+.                        ++++.+.+.-      
T Consensus        41 ~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~------------------------i~~~~~~~~~------   88 (368)
T d1mdah_          41 YFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD------------------------FALASTSFAR------   88 (368)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSC------------------------EEEEEEEETT------
T ss_pred             cCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCE------------------------EEEEcccCcc------
Confidence            34455  556688899999998888765  5889998887                        2221110000      


Q ss_pred             EEEEcCCcceEEEeCCCCCCcccC-CCCCC---CCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeee-ee
Q psy682           82 VTVTANHQFAINRWNPDYAASIQS-PSYAE---TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR-HN  156 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~-~~h~~---~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~-~~  156 (330)
                       .++++++.+|++|+......... +.+..   .+......+.|||||+++..+......+..+.+...-. ...+. ..
T Consensus        89 -~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~  166 (368)
T d1mdah_          89 -SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSAS  166 (368)
T ss_dssp             -TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSS
T ss_pred             -ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccC
Confidence             13467789999999876553322 11111   11234567899999993322222333444555433110 00010 13


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeeccccccc------ccccCCC-----------CcEEEe-------------HHHH
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ------EGKFDHP-----------NRLFSS-------------ISLA  206 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~------~~l~gH~-----------d~ViaS-------------t~~l  206 (330)
                      |..+.|+++..+...+.|+++.+ |....+...      ....++.           ..++.+             ++..
T Consensus       167 ~~~~~~~~~~~~v~~~~Dg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         167 CFHIHPGAAATHYLGSCPASLAA-SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM  245 (368)
T ss_dssp             CCCCEEEETTEEECCCCTTSCEE-EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEE
T ss_pred             cceEccCCCceEEEEcCCCCEEE-EEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEE
Confidence            55567777766777788998887 776432211      0111110           011100             0000


Q ss_pred             ---------------Hhh------hccCCC-------------------cEEEEcc-cCceeeecCCCCCCCCCcEEEeC
Q psy682          207 ---------------WKN------CQRDTS-------------------DVKVHTT-FGDLLRSLDPPSGFASPESVVMS  245 (330)
Q Consensus       207 ---------------W~~------SgS~Dg-------------------tvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS  245 (330)
                                     |..      ..+.|+                   +|.+|+. +|+.++++... .  .+.+++||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~--~~~~~a~s  322 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-H--DSDAIIAA  322 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-E--EECEEEEC
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-C--ceeEEEEC
Confidence                           110      222233                   3556654 68888888743 3  68999999


Q ss_pred             CCccE--EEEc-cCCeEEEEe-eCCceeeeccCc
Q psy682          246 REGVI--VVNY-ERGHIAAFT-MNGNRLRHESHN  275 (330)
Q Consensus       246 ~dG~~--l~s~-~~~~~~~~s-~nG~~las~~~~  275 (330)
                      |||+.  +++. .++.+..|. -.||.++++...
T Consensus       323 pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            99983  3444 478899996 578988888754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.14  E-value=4.9e-10  Score=101.46  Aligned_cols=224  Identities=9%  Similarity=-0.038  Sum_probs=128.7

Q ss_pred             ccCCCcEEEeecccccccceeecCCCcee-------EEEeCCCCCcCcc---------ee-------eeecCccEEEEEe
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSSVR-------SLALSHDQKYSPM---------MF-------STVLDDVCMSLKF   59 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~V~-------svafSpdg~~~~l---------~~-------~~~~~d~~~~v~F   59 (330)
                      ++.+++|++||..+++++..+..|.....       .++|+|||+....         ..       ...+......+.|
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHI  172 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEE
Confidence            45788999999999999999988887764       4688888886110         00       0111222344556


Q ss_pred             CCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-CCCCCCCCC--CCCccccCCCceeccCCCCCC
Q psy682           60 PSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSP--PGNLPLTLDPILTHPTSNNNA  136 (330)
Q Consensus        60 s~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-~h~~~~~~~--~~~l~fs~D~~l~~~s~~~~~  136 (330)
                      +|+++.                ..++...++++.+|+.......... .+.......  ...+.+++++.++..+.++. 
T Consensus       173 s~~g~~----------------~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  235 (373)
T d2madh_         173 HPGAPS----------------TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-  235 (373)
T ss_pred             ecCCCc----------------EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCce-
Confidence            666654                3467777888999998765543321 221111111  12344555555443222221 


Q ss_pred             CcceeccCCC-----------Ccccee-----eeeeEEEEecCCCeEEE---------eeccCCeEEEeeeccccccccc
Q psy682          137 PVPKRHLGDN-----------FSQKLR-----VRHNCFVTTVDSRFLLA---------CGFWDNSFREPFTTMYLALQEG  191 (330)
Q Consensus       137 ~~~~~~l~~~-----------~~~~~~-----~~~~~~~~spDg~~i~a---------sg~~D~tirl~w~~~~g~l~~~  191 (330)
                       .........           ......     .....+++++|++.++.         ....++.+++ |++.+++.+..
T Consensus       236 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~t~~~~~~  313 (373)
T d2madh_         236 -ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS-VTGLVGQTSSQ  313 (373)
T ss_pred             -EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE-EECCCCcEEEE
Confidence             111111110           000000     01123456666665443         3345678899 99999988776


Q ss_pred             ccCCCCc--E-EEe--HHHHHhhhccCCCcEEEEcc-cCceeeecCCCCCCCCCcEEEeCCCc
Q psy682          192 KFDHPNR--L-FSS--ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPPSGFASPESVVMSREG  248 (330)
Q Consensus       192 l~gH~d~--V-iaS--t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h~~~~~v~~v~fS~dG  248 (330)
                      +......  + |..  +-+++ .+++.|++|++|+. +|++++++.+|..  .+..|++-+++
T Consensus       314 ~~~~~~~~~~a~spDG~~~l~-vt~~~d~~v~v~D~~tg~~~~~~~~~g~--~P~~l~~~~~~  373 (373)
T d2madh_         314 ISLGHDVDAISVAQDGGPDLY-ALSAGTEVLHIYDAGAGDQDQSTVELGS--GPQVLSVMNEA  373 (373)
T ss_pred             ecCCCCeeEEEECCCCCEEEE-EEeCCCCeEEEEECCCCCEEEEECCCCC--CCcEEEEecCC
Confidence            6433222  1 222  21122 28999999999976 7999999998877  78888887664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=1.4e-10  Score=101.92  Aligned_cols=202  Identities=10%  Similarity=0.013  Sum_probs=113.5

Q ss_pred             CcccCCCcEEEeecccccccceeecCC-----CceeEEEeCCCCCcCc-------------------ceeee--------
Q psy682            1 MSGGDKGIVEVWRTFNLALLYAFPSCD-----SSVRSLALSHDQKYSP-------------------MMFST--------   48 (330)
Q Consensus         1 asgs~d~~V~lW~~~~g~~l~tl~gH~-----~~V~svafSpdg~~~~-------------------l~~~~--------   48 (330)
                      |+++.|+.|++||+.+|+++.++..+.     ..+..++|||||+.-.                   .....        
T Consensus        50 v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (337)
T d1pbyb_          50 ATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             EEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE
Confidence            356789999999999999999987764     4456899999998700                   00000        


Q ss_pred             --ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCc
Q psy682           49 --VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI  126 (330)
Q Consensus        49 --~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~  126 (330)
                        .....+..+.|+|||..+                 ++++.+  ++.|+...........+.    .......+++|+.
T Consensus       130 ~~~~~~~~~~~~~s~dg~~l-----------------~~~~~~--~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~  186 (337)
T d1pbyb_         130 AFEAPRQITMLAWARDGSKL-----------------YGLGRD--LHVMDPEAGTLVEDKPIQ----SWEAETYAQPDVL  186 (337)
T ss_dssp             EEECCSSCCCEEECTTSSCE-----------------EEESSS--EEEEETTTTEEEEEECST----TTTTTTBCCCBCC
T ss_pred             eccccCCceEEEEcCCCCEE-----------------EEEcCC--cceeeeecCcEEEEeecC----CccccceecCCcc
Confidence              111223345666666654                 444554  467777554433222111    1233455556555


Q ss_pred             eeccCCCCCCC-----------------------cceeccCC-CCcc-ceeee---eeEEEEecCCCeEEEeeccCCeEE
Q psy682          127 LTHPTSNNNAP-----------------------VPKRHLGD-NFSQ-KLRVR---HNCFVTTVDSRFLLACGFWDNSFR  178 (330)
Q Consensus       127 l~~~s~~~~~~-----------------------~~~~~l~~-~~~~-~~~~~---~~~~~~spDg~~i~asg~~D~tir  178 (330)
                      ...........                       ...+.+.. .... .+..+   ..+.+++|+++++++ +  |++|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~  263 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-A--YNVLE  263 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE-E--ESEEE
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE-c--cccEE
Confidence            22110000000                       00000000 0000 00000   135678899988543 3  68999


Q ss_pred             EeeecccccccccccCCCCcE--E-Ee---HHHHHhhhccCCCcEEEEcc-cCceeeecCCC
Q psy682          179 EPFTTMYLALQEGKFDHPNRL--F-SS---ISLAWKNCQRDTSDVKVHTT-FGDLLRSLDPP  233 (330)
Q Consensus       179 l~w~~~~g~l~~~l~gH~d~V--i-aS---t~~lW~~SgS~Dgtvkl~~~-~G~ll~tL~~h  233 (330)
                      + |++.+++++..+. +...+  + .|   ....   .|+.||+|++|+. +++.+.+|+-+
T Consensus       264 v-~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~---v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         264 S-FDLEKNASIKRVP-LPHSYYSVNVSTDGSTVW---LGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             E-EETTTTEEEEEEE-CSSCCCEEEECTTSCEEE---EESBSSEEEEEETTTCCEEEEEECG
T ss_pred             E-EECCCCcEEEEEc-CCCCEEEEEECCCCCEEE---EEeCCCcEEEEECCCCcEEEEEECC
Confidence            9 9999999877664 33333  2 22   2122   6889999999975 69999988754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=5.1e-10  Score=100.20  Aligned_cols=192  Identities=13%  Similarity=-0.032  Sum_probs=111.8

Q ss_pred             ccCCCcEEEeecccccccceeecCCCc-------eeEEEeCCCCCc------C---ccee-----------eeecC----
Q psy682            3 GGDKGIVEVWRTFNLALLYAFPSCDSS-------VRSLALSHDQKY------S---PMMF-----------STVLD----   51 (330)
Q Consensus         3 gs~d~~V~lW~~~~g~~l~tl~gH~~~-------V~svafSpdg~~------~---~l~~-----------~~~~~----   51 (330)
                      ++.|+.|++||..+++++.++..+...       ...++|||||+.      .   ....           ...+.    
T Consensus        74 g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            456889999999999988887655433       356899999986      0   0111           11111    


Q ss_pred             ---ccEEEEEeCCCCCeeEeeeccc---------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccCC-
Q psy682           52 ---DVCMSLKFPSNSPICHVTANTY---------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-  106 (330)
Q Consensus        52 ---d~~~~v~Fs~~~~v~~~~~~~~---------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~-  106 (330)
                         .....+.|++|+..+++.....                     .....+....+.++.++.+++|+..++...... 
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  233 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA  233 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence               1123467899999888764222                     122223333466677888999998776533221 


Q ss_pred             --CCCC------CCCCCCCCccccCCCcee-ccCCCCC--------CCcceeccCC-CCccceee--eeeEEEEecCCCe
Q psy682          107 --SYAE------TPGSPPGNLPLTLDPILT-HPTSNNN--------APVPKRHLGD-NFSQKLRV--RHNCFVTTVDSRF  166 (330)
Q Consensus       107 --~h~~------~~~~~~~~l~fs~D~~l~-~~s~~~~--------~~~~~~~l~~-~~~~~~~~--~~~~~~~spDg~~  166 (330)
                        ++..      ........+++++|+... ..+.+..        ..+..+.... ....++..  ...+++|||||+.
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP  313 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred             cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCe
Confidence              1110      001123457888888732 2111111        1112222211 11112222  2358999999984


Q ss_pred             -EEEeeccCCeEEEeeecccccccccccCC
Q psy682          167 -LLACGFWDNSFREPFTTMYLALQEGKFDH  195 (330)
Q Consensus       167 -i~asg~~D~tirl~w~~~~g~l~~~l~gH  195 (330)
                       +++++..|++|++ |+.++|++++++.++
T Consensus       314 ~l~v~~~~d~~i~v-~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         314 LLYALSTGDKTLYI-HDAESGEELRSVNQL  342 (355)
T ss_dssp             EEEEEETTTTEEEE-EETTTCCEEEEECCC
T ss_pred             EEEEEECCCCEEEE-EECCCCCEEEEEeCc
Confidence             6788888999999 999988887777544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.1e-09  Score=93.60  Aligned_cols=186  Identities=10%  Similarity=0.040  Sum_probs=98.2

Q ss_pred             cccCCCcEEEeeccccccccee---ecCCCceeEEEeCCCCCc-------C-ccee-------------eeecCccEEEE
Q psy682            2 SGGDKGIVEVWRTFNLALLYAF---PSCDSSVRSLALSHDQKY-------S-PMMF-------------STVLDDVCMSL   57 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl---~gH~~~V~svafSpdg~~-------~-~l~~-------------~~~~~d~~~~v   57 (330)
                      ++..|+.|++|++..+....++   ..+...+..++|||||+.       . .+..             ...+...+..+
T Consensus        54 ~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v  133 (333)
T d1ri6a_          54 GVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA  133 (333)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred             EECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEE
Confidence            5567899999999765544444   334566778999999997       0 0000             11333445667


Q ss_pred             EeCCCCCeeEeeeccc--------------------------------eeccCC-cEEEEEcCCcceEEEeCCCCCC--c
Q psy682           58 KFPSNSPICHVTANTY--------------------------------VTLHMP-SVVTVTANHQFAINRWNPDYAA--S  102 (330)
Q Consensus        58 ~Fs~~~~v~~~~~~~~--------------------------------~~~~~~-~~v~vS~~~~~tv~lW~~~~~~--~  102 (330)
                      .|+||++.+++.....                                ..+.++ ....++.....+...|..+...  .
T Consensus       134 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  213 (333)
T d1ri6a_         134 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  213 (333)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             EeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce
Confidence            8999999877764322                                011111 1222333333333444432211  1


Q ss_pred             cc---C--CCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccC--CCCccceeee------eeEEEEecCCCeEEE
Q psy682          103 IQ---S--PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--DNFSQKLRVR------HNCFVTTVDSRFLLA  169 (330)
Q Consensus       103 ~~---~--~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~--~~~~~~~~~~------~~~~~~spDg~~i~a  169 (330)
                      ..   .  ..........+..+.+++|+++.............+.+.  .... ....+      ...++||||||+|++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~a~spDGk~l~v  292 (333)
T d1ri6a_         214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-SKEGFQPTETQPRGFNVDHSGKYLIA  292 (333)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-EEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred             eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE-EEEEEeCCCCCeeEEEEeCCCCEEEE
Confidence            10   0  000001112334577899998433222222222222221  1111 11111      136899999999999


Q ss_pred             eeccCCeEEEeeec--cccccc
Q psy682          170 CGFWDNSFREPFTT--MYLALQ  189 (330)
Q Consensus       170 sg~~D~tirl~w~~--~~g~l~  189 (330)
                      ++..+++|++ |.+  ++|+|.
T Consensus       293 a~~~~~~v~v-~~id~~tG~l~  313 (333)
T d1ri6a_         293 AGQKSHHISV-YEIVGEQGLLH  313 (333)
T ss_dssp             ECTTTCEEEE-EEEETTTTEEE
T ss_pred             EECCCCeEEE-EEEECCCCcEE
Confidence            9888899999 855  456653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.80  E-value=8.4e-09  Score=90.58  Aligned_cols=226  Identities=9%  Similarity=-0.010  Sum_probs=125.3

Q ss_pred             EEEEcCCcceEEEeCCCCCCcccC-C-CCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCC-cccee------
Q psy682           82 VTVTANHQFAINRWNPDYAASIQS-P-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQKLR------  152 (330)
Q Consensus        82 v~vS~~~~~tv~lW~~~~~~~~~~-~-~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~-~~~~~------  152 (330)
                      .+|+++.+.+|++|+.....+... . .|.    ..+..+.|+|||+++-.+...+..+..+.+.... ..++.      
T Consensus        10 ~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~----~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~   85 (346)
T d1jmxb_          10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDK----FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   85 (346)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSC----CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEEcCCC----CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence            458889999999999987775443 2 333    2456899999999432222222333344432110 00011      


Q ss_pred             ---eeeeEEEEecCCCeEEEeec-----------cCCeEEEeeecccccccccccCCCC--c-----------EEEe--H
Q psy682          153 ---VRHNCFVTTVDSRFLLACGF-----------WDNSFREPFTTMYLALQEGKFDHPN--R-----------LFSS--I  203 (330)
Q Consensus       153 ---~~~~~~~~spDg~~i~asg~-----------~D~tirl~w~~~~g~l~~~l~gH~d--~-----------ViaS--t  203 (330)
                         .....++|+|||+++++++.           .+..+++ |+..+++....+..|..  .           ++++  .
T Consensus        86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (346)
T d1jmxb_          86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV-FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD  164 (346)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE-EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSS
T ss_pred             ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEE-EecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCc
Confidence               11246889999999877653           4667888 88888776554433211  0           1111  1


Q ss_pred             HHHHhh------------------------------------------------------hccCCCcEEEEcc-cCce-e
Q psy682          204 SLAWKN------------------------------------------------------CQRDTSDVKVHTT-FGDL-L  227 (330)
Q Consensus       204 ~~lW~~------------------------------------------------------SgS~Dgtvkl~~~-~G~l-l  227 (330)
                      +.+|+.                                                      +++.++++.+|+. +|+. .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d1jmxb_         165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  244 (346)
T ss_dssp             EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             ceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE
Confidence            111211                                                      2333444555543 3443 3


Q ss_pred             eecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEee-CCceeeeccCccccccccccccchhhhhc--ccCC-Cccccc
Q psy682          228 RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM-NGNRLRHESHNDNLQELIPELFFLPEMLV--NSNG-YCLGKT  303 (330)
Q Consensus       228 ~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~-nG~~las~~~~~dVkELipef~~~p~~l~--n~~~-~~~g~~  303 (330)
                      ..+.+|..  .+..+.+++++..+++...+.+..|.. +|+.++.......+..+  +|.-....|.  +.++ +.+==.
T Consensus       245 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~v--a~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         245 QEFADLTE--LYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCV--AFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EEEEECSS--CEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEE--EECSSSSCEEEESBSSEEEEEET
T ss_pred             EEeecccc--eeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEE--EEcCCCCEEEEEeCCCcEEEEEC
Confidence            44556666  788999999999888887777777764 66666666544444443  2322222221  1111 100002


Q ss_pred             cCCcccCceecCC
Q psy682          304 EDNVNINNVELPP  316 (330)
Q Consensus       304 ~~g~~v~~V~LP~  316 (330)
                      ++++.+..+.+|.
T Consensus       321 ~t~~~i~~i~~p~  333 (346)
T d1jmxb_         321 DTLEKVKNIKLPG  333 (346)
T ss_dssp             TTTEEEEEEECSS
T ss_pred             ccCCEEEEEECCC
Confidence            3577777777774

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=6.1e-08  Score=88.49  Aligned_cols=191  Identities=7%  Similarity=-0.052  Sum_probs=105.6

Q ss_pred             cccCCCcEEEeecccccccceeecCCC-------ceeEEEeCCCCCc--------Ccceeee-----------e------
Q psy682            2 SGGDKGIVEVWRTFNLALLYAFPSCDS-------SVRSLALSHDQKY--------SPMMFST-----------V------   49 (330)
Q Consensus         2 sgs~d~~V~lW~~~~g~~l~tl~gH~~-------~V~svafSpdg~~--------~~l~~~~-----------~------   49 (330)
                      +|+.|++|++||..+++.+..+..|..       .-+.++|||||+.        ..+....           .      
T Consensus        91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             ccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence            467789999999999999888876543       3457999999998        0011110           0      


Q ss_pred             -cCccEEEEEeCCCCCeeEeeeccc---------------------eeccCCcEEEEEcCCcceEEEeCCCCCCcccC-C
Q psy682           50 -LDDVCMSLKFPSNSPICHVTANTY---------------------VTLHMPSVVTVTANHQFAINRWNPDYAASIQS-P  106 (330)
Q Consensus        50 -~~d~~~~v~Fs~~~~v~~~~~~~~---------------------~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~-~  106 (330)
                       +......+.+++||.++++.....                     ....++..+..+.+....+-.|..+....... .
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecc
Confidence             111224467888998887764322                     23345666666666554333333222111000 0


Q ss_pred             CCCC------CCCCCCCCccccCCCcee-ccCCCCCC-------CcceeccC-CCCcccee--eeeeEEEEecCCC-eEE
Q psy682          107 SYAE------TPGSPPGNLPLTLDPILT-HPTSNNNA-------PVPKRHLG-DNFSQKLR--VRHNCFVTTVDSR-FLL  168 (330)
Q Consensus       107 ~h~~------~~~~~~~~l~fs~D~~l~-~~s~~~~~-------~~~~~~l~-~~~~~~~~--~~~~~~~~spDg~-~i~  168 (330)
                      .+..      ...+....+.+++|+..+ ....++..       .++.+... +....++.  .....++|||||+ +++
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly  330 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEE
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEE
Confidence            1100      001123457778887722 21111100       01111111 00011122  2235789999998 478


Q ss_pred             EeeccCCeEEEeeeccccccccccc
Q psy682          169 ACGFWDNSFREPFTTMYLALQEGKF  193 (330)
Q Consensus       169 asg~~D~tirl~w~~~~g~l~~~l~  193 (330)
                      ++++.|++|++ |+..+||.++++.
T Consensus       331 ~s~~~~~~v~v-~D~~tgk~~~~i~  354 (368)
T d1mdah_         331 ANSAGTEVLDI-YDAASDQDQSSVE  354 (368)
T ss_dssp             EEETTTTEEEE-EESSSCEEEEECC
T ss_pred             EEeCCCCeEEE-EECCCCCEEEEEE
Confidence            88888999999 9999999887765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=6.9e-06  Score=70.50  Aligned_cols=60  Identities=12%  Similarity=-0.006  Sum_probs=41.2

Q ss_pred             EEEeecccccccceeecCCCceeEEEeCCCCCc-------C---cc----------eeeeecCccEEEEEeCCCCCeeEe
Q psy682            9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY-------S---PM----------MFSTVLDDVCMSLKFPSNSPICHV   68 (330)
Q Consensus         9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~-------~---~l----------~~~~~~~d~~~~v~Fs~~~~v~~~   68 (330)
                      |.|=|. +|...+.+..+...+.+-+|||||+.       .   .+          .....+.+......|+|+|..++.
T Consensus        21 l~i~d~-dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          21 LRVSDY-DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEET-TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEcC-CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            444455 57777888778888999999999999       0   00          112344455677788899888754


Q ss_pred             e
Q psy682           69 T   69 (330)
Q Consensus        69 ~   69 (330)
                      .
T Consensus       100 ~  100 (269)
T d2hqsa1         100 A  100 (269)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=1.9e-07  Score=88.03  Aligned_cols=94  Identities=12%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccc-----cccCCCCcE-------------EEe-HHHHHhhhccCCCc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQE-----GKFDHPNRL-------------FSS-ISLAWKNCQRDTSD  216 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~-----~l~gH~d~V-------------iaS-t~~lW~~SgS~Dgt  216 (330)
                      ..+...+|+++++.   .|++|.+ |+..+|+...     ++.+|...|             +++ +.++|+  -|.++.
T Consensus        20 ~~~~W~~d~~~~~~---~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r--~s~~~~   93 (470)
T d2bgra1          20 YSLRWISDHEYLYK---QENNILV-FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR--HSYTAS   93 (470)
T ss_dssp             CCCEECSSSEEEEE---SSSCEEE-EETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSS--SCEEEE
T ss_pred             cCCEeCCCCEEEEE---cCCcEEE-EECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceee--eccCce
Confidence            34557889988553   4788999 9999887543     444444444             222 556665  366888


Q ss_pred             EEEEcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccCC
Q psy682          217 VKVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG  257 (330)
Q Consensus       217 vkl~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~  257 (330)
                      +.||+..++.++.|..|.+  .+..++|||||+.||...++
T Consensus        94 ~~l~d~~~~~~~~l~~~~~--~~~~~~~SPDG~~ia~~~~~  132 (470)
T d2bgra1          94 YDIYDLNKRQLITEERIPN--NTQWVTWSPVGHKLAYVWNN  132 (470)
T ss_dssp             EEEEETTTTEECCSSCCCT--TEEEEEECSSTTCEEEEETT
T ss_pred             EEEEECCCCcccccccCCc--cccccccccCcceeeEeecc
Confidence            9999998877889999988  89999999999999987443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.29  E-value=7.4e-05  Score=68.80  Aligned_cols=154  Identities=9%  Similarity=-0.018  Sum_probs=81.9

Q ss_pred             CCCccccCCCceeccCCCCCCCcceeccCCCCcccee---------eeeeEEEEecCCCeEEEeeccCCeEEEeeecccc
Q psy682          116 PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR---------VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYL  186 (330)
Q Consensus       116 ~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g  186 (330)
                      +.++.|+||++++..+..+.+.++.......-.....         .....++|+|||++++++...+++|.+ |+.+.+
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v-~~~~~~  225 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE-YVIDPA  225 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE-EEECTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE-EEecCC
Confidence            3479999999943333444445554433211100000         012468899999999999989999999 988655


Q ss_pred             ccccccc-------------------CCC---CcEEEe--HHHHHhhhcc-----CCCcEEEEc--ccCceeeecC----
Q psy682          187 ALQEGKF-------------------DHP---NRLFSS--ISLAWKNCQR-----DTSDVKVHT--TFGDLLRSLD----  231 (330)
Q Consensus       187 ~l~~~l~-------------------gH~---d~ViaS--t~~lW~~SgS-----~Dgtvkl~~--~~G~ll~tL~----  231 (330)
                      +......                   .+.   ..+..+  --.++- +..     ..+.|-.+.  ..|.+.+.+.    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv-snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA-SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE-EEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE-EcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            4221110                   000   001011  000000 111     111233332  2344332221    


Q ss_pred             CCCCCCCCcEEEeCC-CccEEEEc--cCCeEEEEeeCCceeeec
Q psy682          232 PPSGFASPESVVMSR-EGVIVVNY--ERGHIAAFTMNGNRLRHE  272 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~-dG~~l~s~--~~~~~~~~s~nG~~las~  272 (330)
                      ...+ ..++.++|+| +|+.|+.+  .++.+..|..+++.++..
T Consensus       305 ~~~G-~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~  347 (365)
T d1jofa_         305 PTSG-GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV  347 (365)
T ss_dssp             SSCC-TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred             EcCC-CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE
Confidence            1112 2788999998 89977665  478899999998866443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.25  E-value=4.1e-06  Score=74.31  Aligned_cols=116  Identities=14%  Similarity=0.065  Sum_probs=76.6

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccccccccccc--CCCCcE--EE--eHHHHHhhhccCCCcEEEEcccCceeee
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKF--DHPNRL--FS--SISLAWKNCQRDTSDVKVHTTFGDLLRS  229 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~--gH~d~V--ia--St~~lW~~SgS~Dgtvkl~~~~G~ll~t  229 (330)
                      ..+++.++|+++++.. ....+.+ ++.+ |+++.++-  .+....  ++  +.-.+|- +....+.|++++.+|+++++
T Consensus       117 ~~~avd~~G~i~v~~~-~~~~~~~-~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v-~d~~~~~V~~~d~~G~~~~~  192 (279)
T d1q7fa_         117 RGVTVDNKGRIIVVEC-KVMRVII-FDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQYLRQ  192 (279)
T ss_dssp             EEEEECTTSCEEEEET-TTTEEEE-ECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCCEEEE
T ss_pred             ceeccccCCcEEEEee-ccceeeE-eccC-CceeecccccccccccceeeeccceeEEe-eeccccceeeeecCCceeee
Confidence            4677889998755543 4566666 7764 76655431  222211  11  1111111 45566789999999999999


Q ss_pred             cCCCCCCCCCcEEEeCCCccEEEEc--cCCeEEEEeeCCceeeeccCc
Q psy682          230 LDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       230 L~~h~~~~~v~~v~fS~dG~~l~s~--~~~~~~~~s~nG~~las~~~~  275 (330)
                      +-.......+..|++.++|.++++-  +...+..|+++|+.+++....
T Consensus       193 ~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~  240 (279)
T d1q7fa_         193 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK  240 (279)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred             ecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCC
Confidence            8532222378999999999999874  355799999999998887543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.11  E-value=5.5e-05  Score=67.35  Aligned_cols=225  Identities=8%  Similarity=-0.056  Sum_probs=111.3

Q ss_pred             cccccceeecCCCceeEEEeCCCCCcCcceeeeecCc-cEEEEEeCCCCCeeEeeeccc----eeccCCcEEEEEcCCcc
Q psy682           16 NLALLYAFPSCDSSVRSLALSHDQKYSPMMFSTVLDD-VCMSLKFPSNSPICHVTANTY----VTLHMPSVVTVTANHQF   90 (330)
Q Consensus        16 ~g~~l~tl~gH~~~V~svafSpdg~~~~l~~~~~~~d-~~~~v~Fs~~~~v~~~~~~~~----~~~~~~~~v~vS~~~~~   90 (330)
                      ..+.+.+|+... |+.++|++|||++    +.+.+.+ .|  .++.|++..........    ..+.+++.+.|+.....
T Consensus        17 ~~~v~~~~p~~~-~~e~iAv~pdG~l----~vt~~~~~~I--~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          17 PAKIITSFPVNT-FLENLASAPDGTI----FVTNHEVGEI--VSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEEECTTC-CEEEEEECTTSCE----EEEETTTTEE--EEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             cccEEEECCCCC-CcCCEEECCCCCE----EEEeCCCCEE--EEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCc
Confidence            445566675433 8999999999998    4343322 23  23445555433322111    23444444455555555


Q ss_pred             eEEEeCCCCCCccc--CCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCC----------ccc--eeeeee
Q psy682           91 AINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----------SQK--LRVRHN  156 (330)
Q Consensus        91 tv~lW~~~~~~~~~--~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~----------~~~--~~~~~~  156 (330)
                      .+..|..+......  .....  .....+.+.+.+|+.+... ......+++.......          ...  ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~--~~~~~n~i~~~~~g~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLP--DAIFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECT--TCSCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             eEEEEEecccccceeeccccC--CccccceeEEccCCCEEee-ccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence            56666654332111  11111  1123456788899984431 1112222222211110          000  000011


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccc-----cCCCCcE-EEeHHHHHhhhccCCCcEEEEcccCceeeec
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGK-----FDHPNRL-FSSISLAWKNCQRDTSDVKVHTTFGDLLRSL  230 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l-----~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL  230 (330)
                      ...+++|+.+++.+.+..+.|.. ++..........     .+..|-+ +.+-=.+|- +...+++|..++.+|+..+..
T Consensus       167 ~ngi~~~~~~l~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v-a~~~~~~V~~i~p~G~~~~~~  244 (302)
T d2p4oa1         167 ANGLKRFGNFLYVSNTEKMLLLR-IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAPDRSTTIIA  244 (302)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEE-EEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECTTCCEEEEE
T ss_pred             cccccccCCceeeecCCCCeEEe-ccccccccccccccccCCCCCcceEECCCCCEEE-EEcCCCcEEEECCCCCEEEEE
Confidence            22345667788888888888766 655432211111     1223333 222112333 556678888888888865443


Q ss_pred             CCCCCCCCCcEEEe---CCCccEEE
Q psy682          231 DPPSGFASPESVVM---SREGVIVV  252 (330)
Q Consensus       231 ~~h~~~~~v~~v~f---S~dG~~l~  252 (330)
                      ....+...+.+|+|   ++|++.|.
T Consensus       245 ~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         245 QAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             ecCCCCCCceEEEEcCCCCCCCEEE
Confidence            32222126899999   77888763

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.91  E-value=0.00056  Score=59.90  Aligned_cols=172  Identities=11%  Similarity=0.086  Sum_probs=95.6

Q ss_pred             CCCcEEEeeccccccccee-ecCCCceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeec-------cceec
Q psy682            5 DKGIVEVWRTFNLALLYAF-PSCDSSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTAN-------TYVTL   76 (330)
Q Consensus         5 ~d~~V~lW~~~~g~~l~tl-~gH~~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~-------~~~~~   76 (330)
                      .++.|+.++. +|+...++ .......+++++.++|++    +...... .....|.+|+.++..-..       ..+..
T Consensus        91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i----~v~~~~~-~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRI----IVVECKV-MRVIIFDQNGNVLHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCE----EEEETTT-TEEEEECTTSCEEEEEECTTTCSSEEEEEE
T ss_pred             Cccccccccc-cccceeecCCCcccccceeccccCCcE----EEEeecc-ceeeEeccCCceeecccccccccccceeee
Confidence            3445666655 46666655 334566778888888876    3332221 233457788877653211       11344


Q ss_pred             cCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCCCCccceeeeee
Q psy682           77 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHN  156 (330)
Q Consensus        77 ~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~  156 (330)
                      .+++.+.++......|++++.++..+.+.                      +   .           .+.+.     +..
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~~G~~~~~~----------------------g---~-----------~g~~~-----~P~  203 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNYEGQYLRQI----------------------G---G-----------EGITN-----YPI  203 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCEEEEE----------------------S---C-----------TTTSC-----SEE
T ss_pred             ccceeEEeeeccccceeeeecCCceeeee----------------------c---c-----------ccccc-----CCc
Confidence            45555666666666677776655321111                      0   0           00010     124


Q ss_pred             EEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCCC
Q psy682          157 CFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSGF  236 (330)
Q Consensus       157 ~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~~  236 (330)
                      .+++.++|+.+++-.+.+..|.+ |+.+ |+++.                                      ++......
T Consensus       204 giavD~~G~i~Vad~~~~~~v~~-f~~~-G~~~~--------------------------------------~~~~~~~~  243 (279)
T d1q7fa_         204 GVGINSNGEILIADNHNNFNLTI-FTQD-GQLIS--------------------------------------ALESKVKH  243 (279)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEE-ECTT-SCEEE--------------------------------------EEEESSCC
T ss_pred             ccccccCCeEEEEECCCCcEEEE-ECCC-CCEEE--------------------------------------EEeCCCCC
Confidence            56678888764443333445666 6653 55433                                      33221111


Q ss_pred             CCCcEEEeCCCccEEEEccCCeEEEEe
Q psy682          237 ASPESVVMSREGVIVVNYERGHIAAFT  263 (330)
Q Consensus       237 ~~v~~v~fS~dG~~l~s~~~~~~~~~s  263 (330)
                      ..++.|++.|||+++|+...+.+..|.
T Consensus       244 ~~p~~vav~~dG~l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVLASKDYRLYIYR  270 (279)
T ss_dssp             SCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             CCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence            267899999999998877677788775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.67  E-value=0.003  Score=53.10  Aligned_cols=51  Identities=14%  Similarity=0.131  Sum_probs=36.4

Q ss_pred             EcccCceeeecCCCCCCCCCcEEEeCCCccEEEEccCCeEEEEeeCCceeeecc
Q psy682          220 HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  273 (330)
Q Consensus       220 ~~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~~~~~~~~s~nG~~las~~  273 (330)
                      .+.+|+.++.|..+.+   ...-.|||||+.||....+.|..+.+++.....+.
T Consensus       219 ~d~~g~~~~~lt~~~~---~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         219 TDLDGKDLRKHTSFTD---YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EETTSCSCEECCCCCS---SCEEEEEESSSCEEEEETTEEEEECTTTCCEEECC
T ss_pred             EeCCCCceEEeecCCC---cccccCcCCCCEEEEEeCCEEEEEECCCCCEEEec
Confidence            4567777777765533   33457999999998877778888888877655553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00098  Score=57.66  Aligned_cols=112  Identities=7%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccc-cc--cccCCCCcE-EEeHHHHHhhhccCCCcEEEEcccCceeeecC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLAL-QE--GKFDHPNRL-FSSISLAWKNCQRDTSDVKVHTTFGDLLRSLD  231 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l-~~--~l~gH~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~  231 (330)
                      ..+++.++|++ +.+-+....+.. ++...... ..  .-+.....| +.+.-.+|- +...++.|..++.+|..+.++.
T Consensus       101 ~~iavd~~g~i-~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v-~~~~~~~i~~~d~~~~~~~~~~  177 (260)
T d1rwia_         101 EGLAVDTQGAV-YVADRGNNRVVK-LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV-TDTDNNRVVKLEAESNNQVVLP  177 (260)
T ss_dssp             EEEEECTTCCE-EEEEGGGTEEEE-ECTTCSSCEECCCCSCCSCCEEEECTTCCEEE-EEGGGTEEEEECTTTCCEEECC
T ss_pred             cccccccccee-Eeeccccccccc-cccccceeeeeeecccCCcceeeecCCCCEee-eccccccccccccccceeeeee
Confidence            57889999987 555566666655 66542221 11  111222222 222112222 3344556677777787777765


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeee
Q psy682          232 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRH  271 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las  271 (330)
                      .-.. ..+..|++.++|.+.++- ..+.+..|.++|.....
T Consensus       178 ~~~~-~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~  217 (260)
T d1rwia_         178 FTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV  217 (260)
T ss_dssp             CSSC-CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE
T ss_pred             cccc-CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE
Confidence            3221 278999999999998887 47788889988864433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.58  E-value=0.00017  Score=66.23  Aligned_cols=154  Identities=9%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             CceeEEEeCCCCCcCcceeeeecCccEEEEEeCCCCCeeEeeecc---------ceeccCCc-EEEEEcCCcceEEEeCC
Q psy682           28 SSVRSLALSHDQKYSPMMFSTVLDDVCMSLKFPSNSPICHVTANT---------YVTLHMPS-VVTVTANHQFAINRWNP   97 (330)
Q Consensus        28 ~~V~svafSpdg~~~~l~~~~~~~d~~~~v~Fs~~~~v~~~~~~~---------~~~~~~~~-~v~vS~~~~~tv~lW~~   97 (330)
                      ..+.+++|+|||+.  +.......+.++...+..++.+..+....         +..+.+++ .+-++...+.+|..|+.
T Consensus       145 ~h~h~v~~sPdG~~--l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         145 TGIHGMVFDPTETY--LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CCEEEEEECTTSSE--EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEECCCCCE--EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            35789999999997  11112334455555555555444332211         12343333 23355666777777776


Q ss_pred             CCCCcccCC----------CCCCC------CCCCCCCccccCCCce-eccCCCCCC-C---cceeccCC--CCcccee--
Q psy682           98 DYAASIQSP----------SYAET------PGSPPGNLPLTLDPIL-THPTSNNNA-P---VPKRHLGD--NFSQKLR--  152 (330)
Q Consensus        98 ~~~~~~~~~----------~h~~~------~~~~~~~l~fs~D~~l-~~~s~~~~~-~---~~~~~l~~--~~~~~~~--  152 (330)
                      +........          +....      .......+.++|||+. .++..+.+. .   +....+..  .+.+...  
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            544321100          00000      0011235788999993 331111111 0   11222111  0000001  


Q ss_pred             ------eeeeEEEEec-CCCeEEEeeccCCeEEEeeecc
Q psy682          153 ------VRHNCFVTTV-DSRFLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       153 ------~~~~~~~~sp-Dg~~i~asg~~D~tirl~w~~~  184 (330)
                            .+...|+|+| ||++|++++..+++|.+ |.++
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v-~~~~  340 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI-YRWK  340 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE-EEEE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE-EEEe
Confidence                  1225688998 89999999888899999 8875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.40  E-value=0.00068  Score=64.94  Aligned_cols=173  Identities=9%  Similarity=-0.081  Sum_probs=103.2

Q ss_pred             cCCCcEEEeecccccccceee-cCCCceeEEEeCCCCCcCcce------------------------e--ee-ecC----
Q psy682            4 GDKGIVEVWRTFNLALLYAFP-SCDSSVRSLALSHDQKYSPMM------------------------F--ST-VLD----   51 (330)
Q Consensus         4 s~d~~V~lW~~~~g~~l~tl~-gH~~~V~svafSpdg~~~~l~------------------------~--~~-~~~----   51 (330)
                      -.++.|.+||+.+++...++. .+......++|+|||++.-..                        +  .. ...    
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            467789999999998877765 468899999999999971100                        0  00 000    


Q ss_pred             -----ccEEEEEeCCCCCeeEeeeccc-------------------------eeccCCcEEEEEcCCcceEEEeCCCC-C
Q psy682           52 -----DVCMSLKFPSNSPICHVTANTY-------------------------VTLHMPSVVTVTANHQFAINRWNPDY-A  100 (330)
Q Consensus        52 -----d~~~~v~Fs~~~~v~~~~~~~~-------------------------~~~~~~~~v~vS~~~~~tv~lW~~~~-~  100 (330)
                           .....+.|+|||+.++++....                         ..+.+++... ..+.+..+.+|.... .
T Consensus       171 qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-TIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-CCTTCCCCEEECSSSCS
T ss_pred             EEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE-EeCCCCcEEEEcccCCc
Confidence                 1234677999999999886322                         1122222221 222344566676543 3


Q ss_pred             CcccCCCCCCCCCCCCCCccccCCCceeccCCCCCCCcceeccCC-------CC--ccceeeee------eEEEEecCCC
Q psy682          101 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-------NF--SQKLRVRH------NCFVTTVDSR  165 (330)
Q Consensus       101 ~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~~~~~~~~~~l~~-------~~--~~~~~~~~------~~~~~spDg~  165 (330)
                      .+.+.+.+.     .+..+.+||||+++.++...+..+..+.+..       .+  ...+....      ..-+|.++|.
T Consensus       250 v~~~IPvgk-----sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~  324 (441)
T d1qnia2         250 FTRYIPVPK-----NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN  324 (441)
T ss_dssp             SEEEECCBS-----SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             eEEEEeCCC-----CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence            344555443     3567999999996544433333333222211       11  11121111      2346899996


Q ss_pred             eEEEeeccCCeEEEeeecc
Q psy682          166 FLLACGFWDNSFREPFTTM  184 (330)
Q Consensus       166 ~i~asg~~D~tirl~w~~~  184 (330)
                      . +++.+.|..|.. |+++
T Consensus       325 ~-yts~~~ds~v~k-w~~~  341 (441)
T d1qnia2         325 A-YTTLFIDSQVCK-WNIA  341 (441)
T ss_dssp             E-EEEETTTTEEEE-EEHH
T ss_pred             E-EEcccccceEEE-eccc
Confidence            5 889999999999 9985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.35  E-value=0.005  Score=54.93  Aligned_cols=96  Identities=11%  Similarity=0.029  Sum_probs=61.2

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeeccc-ccccccc--------cCC--CCcE-EEeHHHHHhhhccCCCcEEEEccc
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMY-LALQEGK--------FDH--PNRL-FSSISLAWKNCQRDTSDVKVHTTF  223 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~-g~l~~~l--------~gH--~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~  223 (330)
                      +-++++||++.|+.+-+..+.|.. |+++. |......        .++  .|-+ +.+.=.||- +....|.|..++.+
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~-~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V-a~~~~g~V~~~~p~  257 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHR-IALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV-AMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEE-EEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE-EEETTTEEEEECTT
T ss_pred             eeeeeccccceEEEecccCCceEE-EEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE-EEcCCCEEEEECCC
Confidence            568999999988888888888887 76642 2221111        001  1212 112112443 45567889999999


Q ss_pred             CceeeecCCCCC----CCCCcEEEeCCCccEEEE
Q psy682          224 GDLLRSLDPPSG----FASPESVVMSREGVIVVN  253 (330)
Q Consensus       224 G~ll~tL~~h~~----~~~v~~v~fS~dG~~l~s  253 (330)
                      |++++++.-+..    +..+.+++|.|++..++.
T Consensus       258 G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         258 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            999999875431    126889999998865544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.34  E-value=0.00092  Score=59.06  Aligned_cols=192  Identities=10%  Similarity=0.028  Sum_probs=101.6

Q ss_pred             EEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCceeccCCC
Q psy682           54 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSN  133 (330)
Q Consensus        54 ~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~~~s~~  133 (330)
                      +..++++|||.++                 ++.-.+++|..|++++.. .......    ..+..++|++||.+.++..+
T Consensus        30 ~e~iAv~pdG~l~-----------------vt~~~~~~I~~i~p~g~~-~~~~~~~----~~~~gla~~~dG~l~v~~~~   87 (302)
T d2p4oa1          30 LENLASAPDGTIF-----------------VTNHEVGEIVSITPDGNQ-QIHATVE----GKVSGLAFTSNGDLVATGWN   87 (302)
T ss_dssp             EEEEEECTTSCEE-----------------EEETTTTEEEEECTTCCE-EEEEECS----SEEEEEEECTTSCEEEEEEC
T ss_pred             cCCEEECCCCCEE-----------------EEeCCCCEEEEEeCCCCE-EEEEcCC----CCcceEEEcCCCCeEEEecC
Confidence            5577888888864                 677778889999987653 2222222    35678999999995543322


Q ss_pred             CCCCcceecc--CCCCcccee-----eeeeEEEEecCCCeEEEeeccCCeEEEeeeccccccc--------ccccCCCCc
Q psy682          134 NNAPVPKRHL--GDNFSQKLR-----VRHNCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQ--------EGKFDHPNR  198 (330)
Q Consensus       134 ~~~~~~~~~l--~~~~~~~~~-----~~~~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~--------~~l~gH~d~  198 (330)
                      +. .+....+  .......+.     ...+.+++.+||++ +++.+.++.+.. ++...+...        .....+...
T Consensus        88 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~-~v~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          88 AD-SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQY-LTADSYRGAIWL-IDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             TT-SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEE-EEEETTTTEEEE-EETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             Cc-eEEEEEecccccceeeccccCCccccceeEEccCCCE-Eeecccccccee-eeccCCcceeEecCCccceeeccCcc
Confidence            22 2222211  111100110     11256778999977 555556666554 555433211        111111111


Q ss_pred             E----EE-eHHHHHhhhccCCCcEEEEcccCc-eeeecC--CCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCcee
Q psy682          199 L----FS-SISLAWKNCQRDTSDVKVHTTFGD-LLRSLD--PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  269 (330)
Q Consensus       199 V----ia-St~~lW~~SgS~Dgtvkl~~~~G~-ll~tL~--~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~l  269 (330)
                      .    ++ .--.+|. +.+..+.|.....++. .+....  ....  .+..++|.+||.+.++. ..+++..++++|+..
T Consensus       165 ~~~ngi~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~  241 (302)
T d2p4oa1         165 PAANGLKRFGNFLYV-SNTEKMLLLRIPVDSTDKPGEPEIFVEQT--NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT  241 (302)
T ss_dssp             CSEEEEEEETTEEEE-EETTTTEEEEEEBCTTSCBCCCEEEEESC--CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE
T ss_pred             cccccccccCCceee-ecCCCCeEEeccccccccccccccccCCC--CCcceEECCCCCEEEEEcCCCcEEEECCCCCEE
Confidence            1    11 1111111 3344455444433221 111100  0112  57889999999988776 578899999999865


Q ss_pred             eecc
Q psy682          270 RHES  273 (330)
Q Consensus       270 as~~  273 (330)
                      .-..
T Consensus       242 ~~~~  245 (302)
T d2p4oa1         242 IIAQ  245 (302)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            4443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0061  Score=51.22  Aligned_cols=203  Identities=10%  Similarity=-0.069  Sum_probs=99.4

Q ss_pred             ecCccEEEEEeCCCCCeeEeeeccceeccCCcEEEEEcCCcceEEEeCCCCCCcccCCCCCCCCCCCCCCccccCCCcee
Q psy682           49 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT  128 (330)
Q Consensus        49 ~~~d~~~~v~Fs~~~~v~~~~~~~~~~~~~~~~v~vS~~~~~tv~lW~~~~~~~~~~~~h~~~~~~~~~~l~fs~D~~l~  128 (330)
                      ...+.+++-+|||||+.|+..+...              ....+..-+.++....+...+.    .......++||++..
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFES--------------GRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTT--------------SSCEEEEEETTTCCEEEEECCS----SCEEEEEECTTSSEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeec--------------cCcceeeeecccCceeEEeeee----cccccceecCCCCee
Confidence            4456678999999999986654321              1111122222222222222221    244567889999833


Q ss_pred             ccCCCCCCCcceeccCCCCcccee-----eeeeEEEEecCCCeEEEeeccCCeEEE-eeecccccccccccCCCCcEE--
Q psy682          129 HPTSNNNAPVPKRHLGDNFSQKLR-----VRHNCFVTTVDSRFLLACGFWDNSFRE-PFTTMYLALQEGKFDHPNRLF--  200 (330)
Q Consensus       129 ~~s~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~i~asg~~D~tirl-~w~~~~g~l~~~l~gH~d~Vi--  200 (330)
                      ....................+...     ........+++++.++.....++...+ -.+++.+...+ +..+.....  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~  176 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDA  176 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eeccccccccc
Confidence            211111111111110000000011     111244578888887777666665555 13443332222 222222211  


Q ss_pred             -Ee---HHHHHhhhccCCCcEEEE--cccCceeeecCCCCCCCCCcEEEeCCCccEEEEcc----CCeEEEEeeCCceee
Q psy682          201 -SS---ISLAWKNCQRDTSDVKVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLR  270 (330)
Q Consensus       201 -aS---t~~lW~~SgS~Dgtvkl~--~~~G~ll~tL~~h~~~~~v~~v~fS~dG~~l~s~~----~~~~~~~s~nG~~la  270 (330)
                       .|   ..+++  .....|...+|  +..+...+.+.. .+  .....+|||||+.||..+    ...|.++.+||+...
T Consensus       177 ~~spdg~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         177 DVSSDGKFMVM--VSSNGGQQHIAKQDLATGGVQVLSS-TF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EECTTSSEEEE--EEECSSCEEEEEEETTTCCEEECCC-SS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             ccccccceeEE--EeecCCceeeeEeecccccceEeec-Cc--cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence             11   11111  23344555554  334444444433 33  578889999999988653    446899999998877


Q ss_pred             eccCc
Q psy682          271 HESHN  275 (330)
Q Consensus       271 s~~~~  275 (330)
                      .+...
T Consensus       252 ~lt~~  256 (269)
T d2hqsa1         252 RLPAT  256 (269)
T ss_dssp             ECCCS
T ss_pred             EEeCC
Confidence            66543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.88  E-value=0.075  Score=46.96  Aligned_cols=104  Identities=11%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             eEEEEecCCC----eEEEeeccCCeEEEeeeccc-ccccc-----cccC----CCCcE-EEeHHHHHhhhccCCCcEEEE
Q psy682          156 NCFVTTVDSR----FLLACGFWDNSFREPFTTMY-LALQE-----GKFD----HPNRL-FSSISLAWKNCQRDTSDVKVH  220 (330)
Q Consensus       156 ~~~~~spDg~----~i~asg~~D~tirl~w~~~~-g~l~~-----~l~g----H~d~V-iaSt~~lW~~SgS~Dgtvkl~  220 (330)
                      +-++++||+.    +|+++-+..+.|.. ++++. |.+..     .+.+    ..|-+ +.+-=.||- +....+.|..+
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~-~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV-a~~~~g~I~~~  252 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWS-YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV-ANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEE-EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE-EEETTTEEEEE
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEE-eeccCccccceeeEEEEccccccccceeeEEecCCcEEE-EEcCCCEEEEE
Confidence            4678898875    67887777787766 55432 33211     1111    11112 112112232 33345678888


Q ss_pred             ccc-CceeeecCCCCCCCCCcEEEeCCCccEE-EEc-cCCeEEEEe
Q psy682          221 TTF-GDLLRSLDPPSGFASPESVVMSREGVIV-VNY-ERGHIAAFT  263 (330)
Q Consensus       221 ~~~-G~ll~tL~~h~~~~~v~~v~fS~dG~~l-~s~-~~~~~~~~s  263 (330)
                      +.+ |+++.++..+..  .+.+++|.|||+.| |+. ..++|..+.
T Consensus       253 dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            865 666777776655  78999999999744 443 466666554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.062  Score=50.41  Aligned_cols=16  Identities=13%  Similarity=0.129  Sum_probs=13.4

Q ss_pred             CcEEEeCCCccEEEEc
Q psy682          239 PESVVMSREGVIVVNY  254 (330)
Q Consensus       239 v~~v~fS~dG~~l~s~  254 (330)
                      +..+.++|||++++..
T Consensus       257 ~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         257 ITMVKWATSTKVAVTW  272 (465)
T ss_dssp             EEEEEESSSSEEEEEE
T ss_pred             eeeeEEcCCCeEEEEE
Confidence            5678999999988776

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.18  E-value=0.18  Score=42.59  Aligned_cols=107  Identities=10%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCC---CCcE-EEeHHHHHhhhccCCCcEEEEcccCceeeecC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDH---PNRL-FSSISLAWKNCQRDTSDVKVHTTFGDLLRSLD  231 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH---~d~V-iaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~  231 (330)
                      ..+++.++|++ +.+...+..|.. ++.+...........   ..-| +.+.=.||- +-+..+.|...+.+|.....+.
T Consensus       143 ~~i~~~~~g~~-~v~~~~~~~i~~-~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~v-sd~~~~~i~~~~~~~~~~~~~~  219 (260)
T d1rwia_         143 DGVAVDNSGNV-YVTDTDNNRVVK-LEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGSTTSTVLP  219 (260)
T ss_dssp             CEEEECTTCCE-EEEEGGGTEEEE-ECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTTEEEEECTTCSCCEECC
T ss_pred             ceeeecCCCCE-eeeccccccccc-cccccceeeeeeccccCCCccceeeeeeeeee-eecCCCEEEEEeCCCCeEEEEc
Confidence            57889999986 555556777777 777533222111121   1112 112112222 3444555666666666555543


Q ss_pred             CCCCCCCCcEEEeCCCccEEEEc-cCCeEEEEeeCC
Q psy682          232 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  266 (330)
Q Consensus       232 ~h~~~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG  266 (330)
                      .- +...+..|+|++||.+.++- ..++|.-++.-|
T Consensus       220 ~~-~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         220 FT-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CC-SCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             cC-CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            22 11368999999999988874 466777666443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.033  Score=52.35  Aligned_cols=47  Identities=13%  Similarity=0.038  Sum_probs=36.2

Q ss_pred             CCcEEEeCCCccEEEEc-c----CCeEEEEeeCCceeeeccCcccccccccc
Q psy682          238 SPESVVMSREGVIVVNY-E----RGHIAAFTMNGNRLRHESHNDNLQELIPE  284 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~----~~~~~~~s~nG~~las~~~~~dVkELipe  284 (330)
                      ...+++|||||+.++-. +    --..+.-+.+|+.+..++.++.++|.+-+
T Consensus       411 ~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N~~l~~~l~~  462 (465)
T d1xfda1         411 TYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAIND  462 (465)
T ss_dssp             CCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECCHHHHHHHHT
T ss_pred             CEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcCCHHHHHHHHh
Confidence            67899999999988844 1    11244457899999999988888887644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.70  E-value=0.13  Score=45.22  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             CCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682          238 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       238 ~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~  275 (330)
                      .+-.+++-+||.+.++. +.+.+..|+++|+.|+.....
T Consensus       229 ~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P  267 (319)
T d2dg1a1         229 GPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIP  267 (319)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECT
T ss_pred             ceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCC
Confidence            46789999999977765 789999999999999887644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.62  E-value=0.12  Score=45.15  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=55.5

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEEeeecccccccccccCCCCcEEEeHHHHHhhhccCCCcEEEEcccCceeeecCCCCC
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFREPFTTMYLALQEGKFDHPNRLFSSISLAWKNCQRDTSDVKVHTTFGDLLRSLDPPSG  235 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl~w~~~~g~l~~~l~gH~d~ViaSt~~lW~~SgS~Dgtvkl~~~~G~ll~tL~~h~~  235 (330)
                      +.+++++|++.++.+.+..+.|.. ++++ .+.. ...+. .                    .+       ...+.+..+
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~-~~~d-~~~~-~~~~~-~--------------------~~-------~~~~~~~~g  199 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMR-VPLD-ARTG-LPTGK-A--------------------EV-------FIDSTGIKG  199 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEE-EEBC-TTTC-CBSSC-C--------------------EE-------EEECTTSSS
T ss_pred             ceeeecCCCceEEEeecccceeeE-eeec-cccc-ccccc-e--------------------EE-------EeccCcccc
Confidence            677889999887887777777766 5543 1100 00000 0                    00       011122222


Q ss_pred             CCCCcEEEeCCCccEEEEc-cCCeEEEEeeCCceeeeccCc
Q psy682          236 FASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHESHN  275 (330)
Q Consensus       236 ~~~v~~v~fS~dG~~l~s~-~~~~~~~~s~nG~~las~~~~  275 (330)
                        .+..+++-.||.+-++. ..+.++.|+++|+++......
T Consensus       200 --~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP  238 (295)
T d2ghsa1         200 --GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP  238 (295)
T ss_dssp             --EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred             --cccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCC
Confidence              57889999999987765 678899999999999888654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.69  E-value=2  Score=34.65  Aligned_cols=32  Identities=6%  Similarity=-0.165  Sum_probs=19.3

Q ss_pred             EEEeecccccccceeecCCCceeEEEeCCCCCc
Q psy682            9 VEVWRTFNLALLYAFPSCDSSVRSLALSHDQKY   41 (330)
Q Consensus         9 V~lW~~~~g~~l~tl~gH~~~V~svafSpdg~~   41 (330)
                      |-+.++++|+ .+.|..+.+.+.+.+|||||+.
T Consensus        23 l~~~d~~~g~-~~~Lt~~~~~~~~p~~SPDG~~   54 (281)
T d1k32a2          23 LWEHDLKSGS-TRKIVSNLGVINNARFFPDGRK   54 (281)
T ss_dssp             EEEEETTTCC-EEEEECSSSEEEEEEECTTSSE
T ss_pred             EEEEECCCCC-EEEEecCCCcccCEEECCCCCE
Confidence            3333565444 3456666667777777777766

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=87.47  E-value=4  Score=35.09  Aligned_cols=24  Identities=4%  Similarity=0.059  Sum_probs=18.3

Q ss_pred             eEEEEecCCCeEEEeeccCCeEEE
Q psy682          156 NCFVTTVDSRFLLACGFWDNSFRE  179 (330)
Q Consensus       156 ~~~~~spDg~~i~asg~~D~tirl  179 (330)
                      .+++|.||++.|+.+.+..++|..
T Consensus       271 t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         271 SNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEE
Confidence            578899999988888766676643