Psyllid ID: psy6838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDFDLL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEccccccccEEEEEEEEEcccccccEEEEEEEccccccccccccccccEEEcccccccccccccEEEEEEEEccccccEEEcccccEEEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEEccccccEEEEEEEcccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEccEEEEEEccccccccccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccEEEEEEccccccEEEEEEEccccccccccccccEEEEccccccccEEEEEEEEcccccccEEEEEEEEEccccccEEEEccccEEEEccccccccccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccEEEccccccccEEEEEEEEEccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEcccEEEEEEccccccccEEEEEEEEccccccccEEEEEEcccccccEEEccccccccccHHHHccccHHHHHHcccEEEEcccccEEEEcccccEEEEEccccHHHHcEEEEEEEEEcccccccEEEccEEEEEEEEEEcccccccccccEEEEcccccccccEEEEEEEEccccccccEEEEEEEcccccEEEEcccccEEEEEccccHHHHccEEEEEEEEcccccccccEEEEEEEEEEccccccEEEccEEEEEccccccccEEEEEEEEccccccccccccEEEEcccccccccEEEEEEEEccccccccEEEEEEcccccccEEEEcccccEEEEEccccHHHHcccEEEEEEEccccccccEEEEEEEEEEEcccccccEcccccEEEccccccccEEEEEEEEEcccccccEEEEcccccccc
Coil and Loop (DISEMBL)
vsdtndnspvfsepvyafdvledlprgsrvgqvfttdadegvnGVVTYSVVSdwandvfsinpqsgiftltakldyedvsdngrleysivsgddeeiftinpsngtlsnlkhldretkSSYNLVVMAtdmakppqkrlssttQVSIVIRdvndnapefitanettipensplNTVVAALKAidrdegqnsyVEYSIinseatpfslgpvDGLLRVAQKLDREIKSNYTLEIkakdrgepskssRTKFFIRLLdendnnpifdsksysasvpenisVGATVLqvsdtndnspvfsepvyafdvledlprgsrvgqvfttdadegvnGVVTYSVVSdwandvfsinpqsgiftltakldyedvHHYIFVVQaqdtgkpmmsSTVTVYFNVvdlndnpplfdpmppnipvyenvtLGTGLASvhavdldsgklpfllpigdfdll
Flexible Loop (DISEMBL)
vsdtndnspvfsePVYAFDVLEDLPRGSRVGQVfttdadegvnGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTInpsngtlsnlkhldRETKSSYNLVVMAtdmakppqkrlssttqvsiVIRDVNDNAPEFITanettipensplNTVVAALKAIDRDEGQNSYVEYSIINseatpfslgpVDGLLRVAQKLDReiksnytleikakdrgepskssrTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVfttdadegvnGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDldsgklpfllpigdfdll
Low Complexity Region (SEG)
VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDFDLL
Disordered region (IsUnstruct)
************EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTIN********************NLVVM*****************VSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL*****************FFIRLLD********************ISVGATVLQVS******PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDF***
Disordered Region (DISOPRED)
VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDF**L
Disordered Region (DISEMBL)
*********VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDM***********TQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKA**********RTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDFDLL
Disordered Region (DISPRO)
VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLPIGDFDLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q6V0I7	4981	Protocadherin Fat 4 OS=Ho	yes	N/A	0.923	0.081	0.360	5e-69
P33450	5147	Cadherin-related tumor su	yes	N/A	0.837	0.071	0.357	2e-67
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	yes	N/A	0.832	0.073	0.358	8e-64
Q91ZI0	3301	Cadherin EGF LAG seven-pa	no	N/A	0.816	0.109	0.300	1e-44
O88278	3313	Cadherin EGF LAG seven-pa	no	N/A	0.816	0.108	0.303	2e-44
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	no	N/A	0.816	0.108	0.300	3e-44
Q8R508	4555	Protocadherin Fat 3 OS=Ra	no	N/A	0.821	0.079	0.307	5e-43
O35161	3034	Cadherin EGF LAG seven-pa	no	N/A	0.798	0.116	0.301	2e-42
Q5DRB0	927	Protocadherin gamma-B1 OS	no	N/A	0.782	0.373	0.318	7e-42
Q9Y5G3	927	Protocadherin gamma-B1 OS	no	N/A	0.782	0.373	0.315	9e-42

>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 251/507 (49%), Gaps = 99/507 (19%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            VSD ND++P FS PVY+FD+ ED   GS V  +  TD D GVNG +TY V  D  + +F 
Sbjct: 1831 VSDVNDHTPKFSRPVYSFDIPEDTIPGSLVAAILATDDDSGVNGEITYIVNEDDEDGIFF 1890

Query: 61   INPQSGIFTLTAKLDYE---------DVSDNG------RLEYSIVS-GDDEEIFTINP-S 103
            +NP +G+F LT  LDYE            D G      R+ ++I+   D+  IF++N  S
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 104  NGTLSNL----------------------------------------------KHLDRET 117
               + NL                                              K LDRE+
Sbjct: 1951 TSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNGVLKVLKALDRES 2010

Query: 118  KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVA 177
            +S YNLVV   D+ + P  R +ST QVSI++ DVNDN P F++   T IPEN+P++TVV 
Sbjct: 2011 QSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLTYIPENTPIDTVVF 2070

Query: 178  ALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG 237
              +A D D G NSY+EY+++N     FS+G +DG +R+  +LDRE  SNYTL + A D+G
Sbjct: 2071 KAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEVSNYTLTVVATDKG 2130

Query: 238  EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPV 297
            +PS SS T+  + +LD NDNNPIF    Y   + EN   G  ++                
Sbjct: 2131 QPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINENTLTGTDII---------------- 2174

Query: 298  YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
                            QVF  D DEG NG V Y +V+   N  F I+  +G  T+   LD
Sbjct: 2175 ----------------QVFAADGDEGTNGQVRYGIVNGNTNQEFRIDSVTGAITVAKPLD 2218

Query: 358  YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENV-TLGTG 416
             E    Y   VQA D G    + T TV   ++D+ND  P+F+  P ++ V EN+ TL   
Sbjct: 2219 REKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNVPENLGTLPRT 2278

Query: 417  LASVHAVDLDSG---KLPFLLPIGDFD 440
            +  V A D D G   KL ++L  G+ D
Sbjct: 2279 ILQVVARDDDRGSNSKLSYVLFGGNED 2305

May function in the regulation of planar cell polarity (By similarity). Cadherins are cell-cell interaction molecules.
Homo sapiens (taxid: 9606)

>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft PE=1 SV=3

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 175/490 (35%), Positives = 241/490 (49%), Gaps = 120/490 (24%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            V D NDN+P+F    Y+ +V E++P  + V  V   D D G                   
Sbjct: 2017 VLDLNDNAPIFDPMSYSSEVFENVPIATEVVTVSAKDIDSG------------------- 2057

Query: 61   INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                +NG +EYSI +GD +  F I+ SNGT+   ++LDRE +S+
Sbjct: 2058 --------------------NNGLIEYSITAGDVDSEFGID-SNGTIRTRRNLDREHRST 2096

Query: 121  YNLVVMATD---------------------------------MAKPPQKRLSSTTQVSIV 147
            Y L V A D                                 +A   Q+RLSST +V+I+
Sbjct: 2097 YTLTVTARDCADEFASFSELEETQLKLKYRSPRKYQQTRQEFLAHQKQQRLSSTVKVTIL 2156

Query: 148  IRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEY--------SIINS 199
            I+DVND  P FI+ANET I EN  +NTVV A+KA+D DEG+N Y++Y         +  S
Sbjct: 2157 IKDVNDEVPVFISANETAIMENVAINTVVIAVKAVDNDEGRNGYIDYLMKEARDEDMGQS 2216

Query: 200  EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
            +  PFSL P DG LRV   LDRE++S+Y L I A+DRGEP +S+ ++  IR+LDENDN+P
Sbjct: 2217 DPLPFSLNPTDGQLRVVDALDRELRSSYLLNITARDRGEPPQSTESQLLIRILDENDNSP 2276

Query: 260  IFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTD 319
            +FD K YSASV EN S+GA VLQVS                                 TD
Sbjct: 2277 VFDPKQYSASVAENASIGAMVLQVS--------------------------------ATD 2304

Query: 320  ADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG-KPMM 378
             DEG NG + YS+V    N  FSI+  +G+  +   L+YE +  Y   V+A+D   +   
Sbjct: 2305 VDEGANGRIRYSIVLGDQNHDFSISEDTGVVRVAKNLNYERLSRYSLTVRAEDCALENPA 2364

Query: 379  SSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG--LASVHAVDLDS----GKLPF 432
              T  +  N++D+NDN P F   P    V EN     G  + +V+A D D+     ++ +
Sbjct: 2365 GDTAELTINILDINDNRPTFLDSPYLARVMENTVPPNGGYVLTVNAYDADTPPLNSQVRY 2424

Query: 433  LLPIGDFDLL 442
             L  GD DL 
Sbjct: 2425 FLKEGDSDLF 2434

Could function as a cell-adhesion protein. Acts as a tumor suppressor. Required for correct morphogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  244 bits (624), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 223/444 (50%), Gaps = 76/444 (17%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            + D NDN PVFS   Y+  ++E+LP GS V     TDAD+GVN                 
Sbjct: 1934 ILDVNDNPPVFSMSSYSTSLMENLPLGSTVLVFNVTDADDGVNS---------------- 1977

Query: 61   INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                   +L YSI SGD    F ++  +G L  LK LDRE++S 
Sbjct: 1978 -----------------------QLSYSIASGDSLGQFAVD-KHGVLKTLKALDRESQSF 2013

Query: 121  YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
            YNLV+   D+ +PP  R +ST QVSI++ DVNDN P F++   T IPEN+P++TVV   +
Sbjct: 2014 YNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPKLTYIPENTPIDTVVFKAQ 2073

Query: 181  AIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS 240
            A D D G NSY+EY+++N     FS+G +DG + +  +LDRE  SNY+L + A D+G+P 
Sbjct: 2074 ATDPDSGPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELDREEVSNYSLTVVATDKGQPP 2133

Query: 241  KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAF 300
             SS T+  + +LD NDNNP+F    Y   + ENI  G  ++QVS                
Sbjct: 2134 LSSSTEVVVMVLDINDNNPVFAQAMYRVQIKENILTGTDIIQVS---------------- 2177

Query: 301  DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED 360
                              D DEG NG V Y +V    +  F I+  +G  T+   LD E 
Sbjct: 2178 ----------------AADNDEGTNGQVRYGIVGGNTHQEFRIDSVTGAITVAKSLDRET 2221

Query: 361  VHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENV-TLGTGLAS 419
               Y   VQA D G    + + TV   ++D+ND  P+F+  P ++ V EN+ TL   +  
Sbjct: 2222 TPAYTLTVQATDRGSSPRTDSCTVAITLLDMNDFVPVFELSPYSVNVPENLGTLPRAILQ 2281

Query: 420  VHAVDLDSG---KLPFLLPIGDFD 440
            V A D D G   +L ++L  G+ D
Sbjct: 2282 VVARDDDQGPNSQLSYVLLGGNED 2305

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score =  181 bits (459), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 129/429 (30%), Positives = 197/429 (45%), Gaps = 68/429 (15%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D ND++PVF +  Y   + E++  G  + Q+  TD D   N  + Y  V   A     
Sbjct: 414 VADRNDHAPVFEQAQYRETLRENVEEGYPILQLRATDGDAPPNANLRYRFVGSPA----- 468

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                        V       F I+P +G +S    +DRE   S
Sbjct: 469 -----------------------------VRTAAAAAFEIDPRSGLISTSGRVDREHMES 499

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAAL 179
           Y LVV A+D  + P  R S+T +V I + D NDNAP+F        + E+   +TVV  +
Sbjct: 500 YELVVEASDQGQEPGPR-SATVRVHITVLDENDNAPQFSEKRYVAQVREDVRPHTVVLRV 558

Query: 180 KAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
            A D+D+  N  V Y+II+  +   F++  + G ++V   LD E +  Y L I+A+D G 
Sbjct: 559 TATDKDKDANGLVHYNIISGNSRGHFAIDSLTGEIQVMAPLDFEAEREYALRIRAQDAGR 618

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
           P  S+ T                               G   +QV D ND++P+F    +
Sbjct: 619 PPLSNNT-------------------------------GLASIQVVDINDHAPIFVSTPF 647

Query: 299 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
              VLE+ P G  V  +   DAD G N  + YS+    ++  F IN  +G  +++  LD 
Sbjct: 648 QVSVLENAPLGHSVIHIQAVDADHGENSRLEYSLTGVASDTPFVINSATGWVSVSGPLDR 707

Query: 359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLA 418
           E V HY F V+A+D G P +S++ +V   V+D+NDN P F     ++ + E+  +GT + 
Sbjct: 708 ESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHLRLNEDAAVGTSVV 767

Query: 419 SVHAVDLDS 427
           SV AVD D+
Sbjct: 768 SVTAVDRDA 776

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/429 (30%), Positives = 199/429 (46%), Gaps = 68/429 (15%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D ND++PVF +  Y   + E++  G  + Q+  TD D   N  + Y  V         
Sbjct: 414 VADRNDHAPVFEQAQYRETLRENVEEGYPILQLRATDGDAPPNANLRYRFVG-------- 465

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
            +P +      A                         F I+P +G +S    +DRE   S
Sbjct: 466 -SPAARTAAAAA-------------------------FEIDPRSGLISTSGRVDREHMES 499

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAAL 179
           Y LVV A+D  + P  R S+T +V I + D NDNAP+F        + E+   +TVV  +
Sbjct: 500 YELVVEASDQGQEPGPR-SATVRVHITVLDENDNAPQFSEKRYVAQVREDVRPHTVVLRV 558

Query: 180 KAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
            A D+D+  N  V Y+II+  +   F++  + G ++V   LD E +  Y L I+A+D G 
Sbjct: 559 TATDKDKDANGLVHYNIISGNSRGHFAIDSLTGEIQVMAPLDFEAEREYALRIRAQDAGR 618

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
           P  S+ T                               G   +QV D ND+SP+F    +
Sbjct: 619 PPLSNNT-------------------------------GLASIQVVDINDHSPIFVSTPF 647

Query: 299 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
              VLE+ P G  V  +   DAD G N  + YS+    ++  F IN  +G  +++  LD 
Sbjct: 648 QVSVLENAPLGHSVIHIQAVDADHGENSRLEYSLTGVASDTPFVINSATGWVSVSGPLDR 707

Query: 359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLA 418
           E V HY F V+A+D G P +S++ +V   V+D+NDN P F     ++ + E+  +GT + 
Sbjct: 708 ESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHLRLNEDAAVGTSVV 767

Query: 419 SVHAVDLDS 427
           SV AVD D+
Sbjct: 768 SVTAVDRDA 776

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score =  179 bits (455), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 129/429 (30%), Positives = 193/429 (44%), Gaps = 68/429 (15%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D ND+SPVF +  Y   + E++  G  + Q+  TD D   N  + Y  V         
Sbjct: 423 VADRNDHSPVFEQAQYRETLRENVEEGYPILQLRATDGDAPPNANLRYRFVGP------- 475

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                                F I+P +G +S    +DRE   S
Sbjct: 476 ---------------------------PAARAAAAAAFEIDPRSGLISTSGRVDREHMES 508

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAAL 179
           Y LVV A+D  + P  R S+T +V I + D NDNAP+F        + E+   +TVV  +
Sbjct: 509 YELVVEASDQGQEPGPR-SATVRVHITVLDENDNAPQFSEKRYVAQVREDVRPHTVVLRV 567

Query: 180 KAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
            A DRD+  N  V Y+II+  +   F++  + G ++V   LD E +  Y L I+A+D G 
Sbjct: 568 TATDRDKDANGLVHYNIISGNSRGHFAIDSLTGEIQVVAPLDFEAEREYALRIRAQDAGR 627

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
           P  S+ T                               G   +QV D ND+ P+F    +
Sbjct: 628 PPLSNNT-------------------------------GLASIQVVDINDHIPIFVSTPF 656

Query: 299 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
              VLE+ P G  V  +   DAD G N  + YS+     +  F IN  +G  +++  LD 
Sbjct: 657 QVSVLENAPLGHSVIHIQAVDADHGENARLEYSLTGVAPDTPFVINSATGWVSVSGPLDR 716

Query: 359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLA 418
           E V HY F V+A+D G P +S++ +V   V+D+NDN P F     ++ + E+  +GT + 
Sbjct: 717 ESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHLRLNEDAAVGTSVV 776

Query: 419 SVHAVDLDS 427
           SV AVD D+
Sbjct: 777 SVTAVDRDA 785

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1

 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 207/445 (46%), Gaps = 82/445 (18%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            VSD NDNSPV  +  Y+  + ED+P    + +V   DAD G                   
Sbjct: 3018 VSDVNDNSPVCDQVAYSASLPEDIPSNKIILKVSAKDADIG------------------- 3058

Query: 61   INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                 NG + YS+    + + F ++P +G L  L  LDRE    
Sbjct: 3059 --------------------SNGDIRYSLYGSGNSDFF-LDPESGELKTLALLDRERVPV 3097

Query: 121  YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET-TIPENSPLNTVVAAL 179
            YNL+  ATD       R  S+T V +++ DVNDN P F + + T  + EN+    ++  +
Sbjct: 3098 YNLIARATDGGG----RFCSST-VLLLLEDVNDNPPVFSSNHYTACVYENTATKALLTRV 3152

Query: 180  KAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-E 238
            +A+D D G N  V YS+ +S +  FS+    G++ + Q LDRE +S+Y + ++A D+   
Sbjct: 3153 QAVDPDVGINRKVVYSLEDSASGVFSIDSSSGVIVLEQPLDREQQSSYNISVRATDQSPG 3212

Query: 239  PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
             S SS T   I +LD NDN P+F+ + Y  +VPE+ S+G  VL                 
Sbjct: 3213 QSLSSLTSVTITVLDINDNPPVFERRDYLVTVPEDTSLGTQVL----------------- 3255

Query: 299  AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
                            VF T  D G N  +TY + S      F INP++G  ++   LDY
Sbjct: 3256 ---------------SVFATSKDIGTNAEITYLIRSGNEQGKFRINPKTGGISVLEALDY 3300

Query: 359  EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLA 418
            E    +  VV+A+D G P +S+  TV  ++ D+NDNPP F     +  + E+   G  + 
Sbjct: 3301 EMCKRFYLVVEAKDGGTPALSTAATVSIDLTDVNDNPPRFSQDVYSAVISEDALEGDSVI 3360

Query: 419  SVHAVDLDS---GKLPFLLPIGDFD 440
             + A D+DS   G++ F +  GD D
Sbjct: 3361 LLIAEDVDSKPNGQIRFSIVGGDRD 3385

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Rattus norvegicus (taxid: 10116)

>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus GN=Celsr1 PE=2 SV=3

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 201/448 (44%), Gaps = 95/448 (21%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           VSDTND+SPVF +  Y   + E+L  G  V  +  TD D                     
Sbjct: 358 VSDTNDHSPVFEQSEYRERIRENLEVGYEVLTIRATDGD--------------------- 396

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                N  + Y ++ G    +F I+  +G +     +DRE  + 
Sbjct: 397 ------------------APSNANMRYRLLEGAGG-VFEIDARSGVVRTRAVVDREEAAE 437

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAAL 179
           Y L+V A D  + P   LS++  V IV+ D NDN P+F        +PE+  +NT V  +
Sbjct: 438 YQLLVEANDQGRNPGP-LSASATVHIVVEDENDNYPQFSEKRYVVQVPEDVAVNTAVLRV 496

Query: 180 KAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
           +A DRD+GQN+ + YSI++      F L  + G L V   LD E    YTL IKA+D G 
Sbjct: 497 QATDRDQGQNAAIHYSIVSGNLKGQFYLHSLSGSLDVINPLDFEAIREYTLRIKAQDGGR 556

Query: 239 PSKSSRTKFF-IRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPV 297
           P   + +    +++LD NDN PIF S  + A+V EN+ +G +VL +              
Sbjct: 557 PPLINSSGLVSVQVLDVNDNAPIFVSSPFQAAVLENVPLGHSVLHIQ------------- 603

Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV----------------- 340
                                DAD G N  + Y +V D A+ +                 
Sbjct: 604 -------------------AVDADAGENARLQYRLV-DTASTIVGGSSVDSENPASAPDF 643

Query: 341 -FSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFD 399
            F I+  SG  T+ A+LD E+V HY F V+A D G P MSS+ +V   V+D+NDN P+F 
Sbjct: 644 PFQIHNSSGWITVCAELDREEVEHYSFGVEAVDHGSPAMSSSASVSITVLDVNDNDPMFT 703

Query: 400 PMPPNIPVYENVTLGTGLASVHAVDLDS 427
                + + E+  +G+ + ++ A D D+
Sbjct: 704 QPVYELRLNEDAAVGSSVLTLRARDRDA 731

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes GN=PCDHGB1 PE=3 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 208/459 (45%), Gaps = 113/459 (24%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVF 59
           V+D NDN+PVFS+ VY   + E++P G+ V +V  TD DEG+N  +TY+ + S  +  +F
Sbjct: 229 VTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLF 288

Query: 60  SINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKS 119
           ++NP +G           D++ NG                             LD E  S
Sbjct: 289 NLNPNTG-----------DITTNGT----------------------------LDFEETS 309

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAA 178
            Y L V A D         ++   V I I D NDNAPE    +    IPE+S L TV+A 
Sbjct: 310 RYVLSVEAKDGGVH-----TAHCNVQIEIVDENDNAPEVTFVSFSNQIPEDSDLGTVIAL 364

Query: 179 LKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG---LLRVAQKLDREIKSNYTLEIKAKD 235
           +K  D+D GQN  V   I   E  PF L         L +A  L+RE  ++Y + I A D
Sbjct: 365 IKVRDKDSGQNGMVTCYI--QEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATD 422

Query: 236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSE 295
           +G+P+ SSRT   + + D NDN P+F   SY             V+ VS+ N        
Sbjct: 423 KGKPALSSRTSITLHISDINDNAPVFHQASY-------------VVHVSENN-------- 461

Query: 296 PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV--------FSINPQS 347
                      P G+ + QV  +D D G NG V+YS++   A+D+         S++PQS
Sbjct: 462 -----------PPGASIAQVSASDPDLGPNGRVSYSIL---ASDLEPRELLSYVSVSPQS 507

Query: 348 GIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP----------- 396
           G+       D+E +  +   +QA+D G P +S+ V++   V DLNDN P           
Sbjct: 508 GVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPDG 567

Query: 397 --LFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFL 433
             LFD +P           G  +  V AVD DSG   +L
Sbjct: 568 SALFDMVP------RAAEPGYLVTKVVAVDADSGHNAWL 600

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Pan troglodytes (taxid: 9598)

>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=PCDHGB1 PE=2 SV=1

 Score =  171 bits (433), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 145/459 (31%), Positives = 208/459 (45%), Gaps = 113/459 (24%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVF 59
           V+D NDN+PVFS+ VY   + E++P G+ V +V  TD DEG+N  +TY+ + S  +  +F
Sbjct: 229 VTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLF 288

Query: 60  SINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKS 119
           ++NP +G           D++ NG                             LD E  S
Sbjct: 289 NLNPNTG-----------DITTNGT----------------------------LDFEETS 309

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAA 178
            Y L V A D         ++   V I I D NDNAPE    +    IPE+S L TV+A 
Sbjct: 310 RYVLSVEAKDGGVH-----TAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIAL 364

Query: 179 LKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG---LLRVAQKLDREIKSNYTLEIKAKD 235
           +K  D+D GQN  V  +    E  PF L         L +A  L+RE  ++Y + I A D
Sbjct: 365 IKVRDKDSGQNGMV--TCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATD 422

Query: 236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSE 295
           +G+P+ SSRT   + + D NDN P+F   SY             V+ VS+ N        
Sbjct: 423 KGKPALSSRTSITLHISDINDNAPVFHQASY-------------VVHVSENN-------- 461

Query: 296 PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV--------FSINPQS 347
                      P G+ + QV  +D D G NG V+YS++   A+D+         S++PQS
Sbjct: 462 -----------PPGASIAQVSASDPDLGPNGRVSYSIL---ASDLEPRELLSYVSVSPQS 507

Query: 348 GIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP----------- 396
           G+       D+E +  +   +QA+D G P +S+ V++   V DLNDN P           
Sbjct: 508 GVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPDG 567

Query: 397 --LFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFL 433
             LFD +P           G  +  V AVD DSG   +L
Sbjct: 568 SALFDMVP------RAAEPGYLVTKVVAVDADSGHNAWL 600

Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
321458298	5030	hypothetical protein DAPPUDRAFT_329129 [	0.927	0.081	0.424	3e-97
170032325	644	conserved hypothetical protein [Culex qu	0.837	0.574	0.414	7e-82
391338304	4957	PREDICTED: LOW QUALITY PROTEIN: cadherin	0.891	0.079	0.374	1e-81
242014336	5078	protocadherin-16 precursor, putative [Pe	0.923	0.080	0.388	6e-79
357614377	3180	cadherin-like protein [Danaus plexippus]	0.837	0.116	0.414	7e-78
189236209	4974	PREDICTED: similar to AGAP007924-PA [Tri	0.819	0.072	0.404	9e-77
270006423	3284	cadherin-like protein [Tribolium castane	0.819	0.110	0.404	1e-76
119625608	4929	FAT tumor suppressor homolog 4 (Drosophi	0.920	0.082	0.402	3e-76
345479135	4967	PREDICTED: cadherin-related tumor suppre	0.925	0.082	0.376	7e-76
312374399	3475	hypothetical protein AND_15952 [Anophele	0.884	0.112	0.383	2e-74

>gi|321458298|gb|EFX69368.1| hypothetical protein DAPPUDRAFT_329129 [Daphnia pulex]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 287/511 (56%), Gaps = 101/511 (19%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            V DTNDNSP FSE  Y+FD+ ED  RG+ VG V   D DEG+N  V+Y+V+SDW NDVFS
Sbjct: 1866 VIDTNDNSPTFSEAAYSFDIPEDTGRGAFVGAVVANDMDEGINAQVSYTVLSDWGNDVFS 1925

Query: 61   INPQSGIFTLTAKLDYEDV---------SDNGR-------------------------LE 86
            +NPQSG+FTLT++LDYE V          D GR                         + 
Sbjct: 1926 LNPQSGVFTLTSRLDYEQVQHYIFVVQAQDTGRPSLSSTVTVYFNVLDLNDNAPLFDPMS 1985

Query: 87   YS--------------IVSGDDEE-------IFTINPSN----------GTLSNLKHLDR 115
            YS               VS  D++       +++I   N          GT+   + LDR
Sbjct: 1986 YSDELYENITIGSSVITVSATDQDSGDNGKLVYSIIGGNENEQFRITQNGTIMTSQSLDR 2045

Query: 116  ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTV 175
            ET+S YNLV+MATD AKPP+KRLSST QV+I+++DVND APEF+++NET + EN P+NTV
Sbjct: 2046 ETQSLYNLVIMATDQAKPPEKRLSSTVQVTIILKDVNDMAPEFVSSNETAVMENIPINTV 2105

Query: 176  VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD 235
            V A+KAIDRDEG+NSY+EYS+   +   F+LGPVDGLLRV+  LDRE ++NYTL + A D
Sbjct: 2106 VMAIKAIDRDEGRNSYIEYSLAPIDDGCFTLGPVDGLLRVSALLDRESRANYTLHVMAYD 2165

Query: 236  RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSE 295
            RG PS+S      +R+LDENDN+P+FD K YSASV EN ++G +VLQVS           
Sbjct: 2166 RGLPSRSQSLDVLVRVLDENDNSPLFDPKVYSASVSENATIGLSVLQVS----------- 2214

Query: 296  PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAK 355
                                  TD DEG+NG V Y++V    N  F I   SGI  +   
Sbjct: 2215 ---------------------ATDLDEGLNGRVRYTIVGGDINFDFHIGEDSGIIRVAKN 2253

Query: 356  LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY-ENVTLG 414
            L++E    Y+  +Q +D+G  +   T T    ++D+NDN P+F   P    V  EN  L 
Sbjct: 2254 LNFERRSQYVLTIQVEDSGNDVRYDTATATITIMDINDNAPIFLDSPYIAYVMEENNRLP 2313

Query: 415  TGLASVHAVDLDS---GKLPFLLPIGDFDLL 442
              + +V A D DS    ++ +L+  GD  L 
Sbjct: 2314 VPIITVQAHDADSPPYNRVRYLIKDGDKGLF 2344

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032325|ref|XP_001844032.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872318|gb|EDS35701.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 188/454 (41%), Positives = 253/454 (55%), Gaps = 84/454 (18%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+P+F    Y+ ++ E++P  + V  V  TD D G+NG                
Sbjct: 214 VIDLNDNAPIFDPMSYSNEIFENVPISTDVVTVSATDTDSGING---------------- 257

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                  R+EYSI SGDD E F I  SNGT+   + LDRE+KSS
Sbjct: 258 -----------------------RIEYSITSGDDNEDFQI-LSNGTIRTRRALDRESKSS 293

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
           Y+L+V A D AK P+K+LSST QV+IV++DVND APEF+T NET++ EN P+NTV+ A+K
Sbjct: 294 YSLIVSARDCAKEPEKQLSSTVQVTIVLKDVNDLAPEFVTPNETSVAENIPINTVIMAIK 353

Query: 181 AIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS 240
           A+DRDEG+N YVEY +  +  TPF++G  DGLLRV+ +LDRE KS+Y L + AKDRGEP 
Sbjct: 354 AVDRDEGRNGYVEYQLDPAVQTPFTVGSADGLLRVSGRLDRETKSSYELTVTAKDRGEPP 413

Query: 241 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAF 300
           KSS++K  I +LDENDN+PIFD K YSA++ EN S+GA+VLQVS                
Sbjct: 414 KSSQSKIRIHVLDENDNSPIFDPKQYSAAIAENASIGASVLQVS---------------- 457

Query: 301 DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED 360
                            TD DEG NG V +S+ +   N  F+I+  SG+  +   L+YE 
Sbjct: 458 ----------------ATDIDEGANGRVRFSIAAGDDNRDFTISEDSGVVRVAKNLNYER 501

Query: 361 VHHYIFVVQAQDT------GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLG 414
             HY   V+A+D+      G  +   T  +   + D+NDNPP F   P    V ENV   
Sbjct: 502 KSHYTVTVRAEDSASDTENGSEVRFDTARLSITITDINDNPPTFLDSPYLAYVMENVIPP 561

Query: 415 TG--LASVHAVDLDS----GKLPFLLPIGDFDLL 442
            G  + +V A D D+     ++ + L  GD D  
Sbjct: 562 NGGYVITVRAYDADTPPFNSQVRYFLKEGDTDFF 595

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391338304|ref|XP_003743499.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-related tumor suppressor-like [Metaseiulus occidentalis]

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 271/497 (54%), Gaps = 103/497 (20%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND--- 57
            V DTNDNSPVFS  +++FD+ ED PRG ++G V  TDAD G NG V+YSV+SDW ND   
Sbjct: 1834 VLDTNDNSPVFSHSMFSFDIPEDTPRGHKIGSVRATDADIGQNGQVSYSVLSDWGNDLFS 1893

Query: 58   ------VFSINP-------QSGIFTLTAK-----------------LDYED--------- 78
                  VF++         Q  IF ++A+                 +D+ D         
Sbjct: 1894 LNPQTGVFTLTSNLDYEQYQHYIFVVSAQDAGVPSLSSTVTVYMNVIDFNDNSPVFDPLS 1953

Query: 79   -------------------VSD-----NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
                                SD     NG + Y+I+ GDD++ F I+  NG +   + LD
Sbjct: 1954 YTAEVREDAPLNTTVLSVHASDLDSGPNGEISYTILEGDDDQQFRIS-ENGRIITTRALD 2012

Query: 115  RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNT 174
            RET+S YNL+V A D A  P++RLSS  QVSIVI+DVND  P F++ N ++I EN+PLNT
Sbjct: 2013 RETRSHYNLIVSAEDRAANPRQRLSSIAQVSIVIQDVNDITPHFVSPNTSSIVENAPLNT 2072

Query: 175  VVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234
            ++ A+KA+D DEG+NS++EYS  +   + FS+GPVDGLLRV  +LDRE+KS Y + + AK
Sbjct: 2073 IIMAVKAVDGDEGRNSHIEYSFASRSESLFSIGPVDGLLRVNSELDRELKSEYQIIVVAK 2132

Query: 235  DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
            DRG+P  S+ T   + +LDENDN+P+F+ + Y A + EN  V  +V++VS          
Sbjct: 2133 DRGKPPLSATTTIIVHVLDENDNSPVFEQRQYEAVMSENSPVEKSVIKVS---------- 2182

Query: 295  EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTA 354
                                   TD D G +G++ YS+V+   N  FSI+ ++G+  +  
Sbjct: 2183 ----------------------ATDFDVGPSGLIRYSIVAGDPNHDFSIDEETGVIRVHK 2220

Query: 355  KLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLG 414
            ++DYE  + Y+  VQA+D+       T  +   + D+NDNPP F   P    + EN  + 
Sbjct: 2221 QVDYERKNRYVITVQAEDSSTEARHDTCMISITLKDVNDNPPTFLDNPYEASIVENAIIP 2280

Query: 415  TG----LASVHAVDLDS 427
            +G    +  + AVD+D+
Sbjct: 2281 SGGGLLITQMQAVDVDA 2297

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014336|ref|XP_002427847.1| protocadherin-16 precursor, putative [Pediculus humanus corporis] gi|212512316|gb|EEB15109.1| protocadherin-16 precursor, putative [Pediculus humanus corporis]

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 281/518 (54%), Gaps = 110/518 (21%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRV-------------GQV------------FT 35
            V+DTNDN PVFS+  Y+FDV E+  RG+RV             GQV            F+
Sbjct: 1856 VTDTNDNPPVFSDNAYSFDVPENTIRGTRVGEIMATDEDEGINGQVSYQVISDWANDVFS 1915

Query: 36   TDADEGVNGVVTYSVVSDWANDVFSINPQ-SGIFTLTAKLD------------------- 75
             ++  GV  + T     +  + +F +  Q SG  +L++ L                    
Sbjct: 1916 LNSQSGVFTLTTRLDYEEVQHYIFVVQAQDSGKPSLSSTLTVYFNVIDLNDNAPLFDPMS 1975

Query: 76   -----YEDVS----------------DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
                 +E+V+                 NG +EY I+SGD+ E   I  +NGT+  +K LD
Sbjct: 1976 YNNEVFENVTIGTNVVTVSATDLDSGQNGAIEYKIISGDENEDLAI-ANNGTIYTVKELD 2034

Query: 115  RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNT 174
            RETKS+YNLVV  TD+A+PPQ+RLSST QV+IV++DVND +PEFIT  +T++ EN PLNT
Sbjct: 2035 RETKSAYNLVVTGTDLAEPPQQRLSSTVQVTIVLKDVNDMSPEFITPTKTSVSENIPLNT 2094

Query: 175  VVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234
            VV A+KAID+DEG+NSY+EYS+ +   T FS+G +DGLLRV  KLDRE  +NY+LE+ AK
Sbjct: 2095 VVLAIKAIDKDEGRNSYLEYSLYDPTKT-FSVGTIDGLLRVVGKLDRETVANYSLEVVAK 2153

Query: 235  DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
            D+G+P + ++   F+ ++DENDN+P+FD K YSAS+ EN S+GA+VLQVS          
Sbjct: 2154 DKGDPPRYTKQNIFVNVVDENDNSPMFDPKHYSASIAENASIGASVLQVS---------- 2203

Query: 295  EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTA 354
                                   TD DEG+NG V YS+ S   N  FSI+  +G+  +  
Sbjct: 2204 ----------------------ATDVDEGLNGKVRYSIFSGDENRDFSISEDTGVVRVAK 2241

Query: 355  KLDYEDVHHYIFVVQAQDTGK----PMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYEN 410
             L++E    Y+  V+A+D+       +   T T+   V D+NDNPP+F   P    V EN
Sbjct: 2242 NLNFERKPRYLLTVRAEDSSNNDDDNIRYDTATMSIIVRDINDNPPVFLDSPYYAYVMEN 2301

Query: 411  VTLGTG--LASVHAVDLDS----GKLPFLLPIGDFDLL 442
                      +V A D DS    G++ + L  GD  L 
Sbjct: 2302 TVPSPDGYFLTVRASDADSPQYNGQVRYFLKEGDAGLF 2339

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614377|gb|EHJ69044.1| cadherin-like protein [Danaus plexippus]

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/451 (41%), Positives = 248/451 (54%), Gaps = 81/451 (17%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+PVF    ++ ++LED+P GS V  V  TD D G NG                
Sbjct: 117 VIDLNDNAPVFDPMSFSNEILEDVPVGSSVVTVSATDIDSGFNG---------------- 160

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                  +L YSI SGDD + F I+ SNGT+     LDRET   
Sbjct: 161 -----------------------KLTYSIFSGDDNQDFKIS-SNGTIFTSSLLDRETIPI 196

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
           YNLV+ A D+AKPP+ RLS+T QV+I+++DVND APEFI+   T I EN PLNTV+  +K
Sbjct: 197 YNLVITAKDLAKPPEPRLSATVQVTILLKDVNDMAPEFISPKTTAISENIPLNTVIMTVK 256

Query: 181 AIDRDEGQNSYVEYSIINSEATP--FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
           A+D+DEG+N YVEY +         F+LG VDG+LR   KLDRE+KSN+T+ + AKDRG+
Sbjct: 257 AVDKDEGRNGYVEYFMAPDPEVDGYFTLGNVDGILRATGKLDRELKSNFTILLTAKDRGD 316

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
           P   ++ K FI++LDENDN+P+FD K YSASVPEN S+GA+VLQVS              
Sbjct: 317 PPNVTKGKIFIKILDENDNSPVFDPKQYSASVPENASIGASVLQVS-------------- 362

Query: 299 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
                              TD DEG+NG V YS+ S   N  FSI+  +GI  +   L++
Sbjct: 363 ------------------ATDVDEGINGRVRYSIASGDENRDFSISEDTGIVRVAKNLNF 404

Query: 359 EDVHHYIFVVQAQDTGK-PMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVT--LGT 415
           E    YI  ++A+D GK  +   T  +  ++ D+NDNPP F   P    V ENV    G 
Sbjct: 405 ERKSRYILSIKAEDCGKDDIRFDTAELSISIQDINDNPPTFLDTPYLAYVMENVIPPYGG 464

Query: 416 GLASVHAVDLDS----GKLPFLLPIGDFDLL 442
            + +V A D DS     ++ + +  GD DL 
Sbjct: 465 YILTVQAYDADSPPFNNQVRYFIKEGDSDLF 495

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236209|ref|XP_971084.2| PREDICTED: similar to AGAP007924-PA [Tribolium castaneum]

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 246/443 (55%), Gaps = 81/443 (18%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            V D NDN+P+F    Y  ++ E++   + +  V  TD D G                   
Sbjct: 1928 VLDLNDNTPLFDPMSYTNEIFENVSIATPIVTVSATDLDSG------------------- 1968

Query: 61   INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                DNG++ + I +GD+   F + P NGT+   K LDRE +  
Sbjct: 1969 --------------------DNGKIVFRITAGDENGDFEMTP-NGTVITKKELDRERQGL 2007

Query: 121  YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
            YNLVV ATD AKPP +RLSST QV+I+++DVND +PEF+T NET++ EN  +NTVV A+K
Sbjct: 2008 YNLVVTATDQAKPPDQRLSSTVQVTIILKDVNDMSPEFVTPNETSVAENIAINTVVMAVK 2067

Query: 181  AIDRDEGQNSYVEYSIINSEATP--FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
            AID+DEG+N Y+EYS+    A+   FSLGPVDGLLRV+ ++DRE KSNYTL I A+DRG+
Sbjct: 2068 AIDKDEGRNGYIEYSLSPDSASSGTFSLGPVDGLLRVSGRIDRETKSNYTLSITARDRGD 2127

Query: 239  PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
            P +++ TK F+R+LDENDN+P+FD K YSAS+ EN S+GA+VLQVS              
Sbjct: 2128 PPRATHTKIFVRILDENDNSPVFDPKQYSASIAENASIGASVLQVS-------------- 2173

Query: 299  AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
                               TD D+G+NG V YS+ S   N  FSI   +G+  +   L+Y
Sbjct: 2174 ------------------ATDVDDGLNGRVRYSINSGDTNRDFSIAEDTGVVRVAKNLNY 2215

Query: 359  EDVHHYIFVVQAQDT-----GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTL 413
            E    Y+  V+A+D      G+ + + T  +  +V D+NDNPP F   P    V EN   
Sbjct: 2216 ERKSRYVLTVRAEDCAGDVGGEVVRADTAEIVISVSDINDNPPTFLDSPYLAYVMENTIP 2275

Query: 414  GTG--LASVHAVDLDSGKLPFLL 434
              G  + +V A D D+  L  L+
Sbjct: 2276 PNGGYVITVQAYDADTPPLNSLV 2298

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006423|gb|EFA02871.1| cadherin-like protein [Tribolium castaneum]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 246/443 (55%), Gaps = 81/443 (18%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+P+F    Y  ++ E++   + +  V  TD D G                   
Sbjct: 238 VLDLNDNTPLFDPMSYTNEIFENVSIATPIVTVSATDLDSG------------------- 278

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                               DNG++ + I +GD+   F + P NGT+   K LDRE +  
Sbjct: 279 --------------------DNGKIVFRITAGDENGDFEMTP-NGTVITKKELDRERQGL 317

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
           YNLVV ATD AKPP +RLSST QV+I+++DVND +PEF+T NET++ EN  +NTVV A+K
Sbjct: 318 YNLVVTATDQAKPPDQRLSSTVQVTIILKDVNDMSPEFVTPNETSVAENIAINTVVMAVK 377

Query: 181 AIDRDEGQNSYVEYSIINSEATP--FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
           AID+DEG+N Y+EYS+    A+   FSLGPVDGLLRV+ ++DRE KSNYTL I A+DRG+
Sbjct: 378 AIDKDEGRNGYIEYSLSPDSASSGTFSLGPVDGLLRVSGRIDRETKSNYTLSITARDRGD 437

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
           P +++ TK F+R+LDENDN+P+FD K YSAS+ EN S+GA+VLQVS              
Sbjct: 438 PPRATHTKIFVRILDENDNSPVFDPKQYSASIAENASIGASVLQVS-------------- 483

Query: 299 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 358
                              TD D+G+NG V YS+ S   N  FSI   +G+  +   L+Y
Sbjct: 484 ------------------ATDVDDGLNGRVRYSINSGDTNRDFSIAEDTGVVRVAKNLNY 525

Query: 359 EDVHHYIFVVQAQDT-----GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTL 413
           E    Y+  V+A+D      G+ + + T  +  +V D+NDNPP F   P    V EN   
Sbjct: 526 ERKSRYVLTVRAEDCAGDVGGEVVRADTAEIVISVSDINDNPPTFLDSPYLAYVMENTIP 585

Query: 414 GTG--LASVHAVDLDSGKLPFLL 434
             G  + +V A D D+  L  L+
Sbjct: 586 PNGGYVITVQAYDADTPPLNSLV 608

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119625608|gb|EAX05203.1| FAT tumor suppressor homolog 4 (Drosophila) [Homo sapiens]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/455 (40%), Positives = 254/455 (55%), Gaps = 48/455 (10%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            VSD ND++P FS PVY+FD+ ED   GS V  +  TD D GVNG +TY V  D  + +F 
Sbjct: 1831 VSDVNDHTPKFSRPVYSFDIPEDTIPGSLVAAILATDDDSGVNGEITYIVNEDDEDGIFF 1890

Query: 61   INPQSGIFTLTAKLDYE-----------DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN 109
            +NP +G+F LT  LDYE           +   N +L YSI SGD    FT++  NG L  
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGINSQLTYSIASGDSLGQFTVD-KNGVLKV 1949

Query: 110  LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPEN 169
            LK LDRE++S YNLVV   D+ + P  R +ST QVSI++ DVNDN P F++   T IPEN
Sbjct: 1950 LKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLTYIPEN 2009

Query: 170  SPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL 229
            +P++TVV   +A D D G NSY+EY+++N     FS+G +DG +R+  +LDRE  SNYTL
Sbjct: 2010 TPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEVSNYTL 2069

Query: 230  EIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDN 289
             + A D+G+PS SS T+  + +LD                                 NDN
Sbjct: 2070 TVVATDKGQPSLSSSTEVVVMVLD--------------------------------INDN 2097

Query: 290  SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGI 349
            +P+F++ +Y  ++ E+   G+ + QVF  D DEG NG V Y +V+   N  F I+  +G 
Sbjct: 2098 NPIFAQALYKVEINENTLTGTDIIQVFAADGDEGTNGQVRYGIVNGNTNQEFRIDSVTGA 2157

Query: 350  FTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYE 409
             T+   LD E    Y   VQA D G    + T TV   ++D+ND  P+F+  P ++ V E
Sbjct: 2158 ITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNVPE 2217

Query: 410  NV-TLGTGLASVHAVDLDSG---KLPFLLPIGDFD 440
            N+ TL   +  V A D D G   KL ++L  G+ D
Sbjct: 2218 NLGTLPRTILQVVARDDDRGSNSKLSYVLFGGNED 2252

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345479135|ref|XP_001602595.2| PREDICTED: cadherin-related tumor suppressor-like [Nasonia vitripennis]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 269/520 (51%), Gaps = 111/520 (21%)

Query: 1    VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ--------------------------VF 34
            V+DTNDN+P F    Y+FDVLE++PRGSRVGQ                          VF
Sbjct: 1826 VTDTNDNAPSFQATAYSFDVLENVPRGSRVGQVVANDADAPGPNSQISYALISDWANDVF 1885

Query: 35   TTDADEGV------------------------------NGVVTYSVVSDWAND--VFSIN 62
            + +   GV                              + V  Y  V D  ++  +F   
Sbjct: 1886 SLNPSTGVFTLTASLDYEQVQHYILVVQATDGGLPALSSTVTVYCNVVDLNDNTPIFEAG 1945

Query: 63   PQS---------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHL 113
            P+S         G   L+A     D  DNG + YSI+SGD+ E F I  +NGTL   + L
Sbjct: 1946 PRSAELMENATIGSVVLSASASDLDSGDNGHVVYSIISGDEAEDFGI-ANNGTLYTRRLL 2004

Query: 114  DRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLN 173
            DRE KS YNLV+ A D  +PP   L+ST QV+I + DVND +PEF+++N+T+I EN+ +N
Sbjct: 2005 DRENKSVYNLVLEAADSPRPPTTPLASTIQVTISLLDVNDQSPEFVSSNQTSILENAAIN 2064

Query: 174  TVVAALKAIDRDEGQNSYVEYSI-INSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIK 232
            +VV A+KA+D+DEG+N YVEY++     + PFSLG VDG+LRVA  LDRE ++NYTL + 
Sbjct: 2065 SVVMAVKAVDKDEGRNGYVEYALEFGHGSLPFSLGAVDGVLRVAGPLDREQRANYTLRLI 2124

Query: 233  AKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPV 292
            AKDRGEP++S+     + +LDENDN+PIFD + YSASV EN S+GA+VLQVS        
Sbjct: 2125 AKDRGEPARSTLQTVQLLVLDENDNSPIFDPRQYSASVAENASIGASVLQVS-------- 2176

Query: 293  FSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTL 352
                                      D DEG NG V YS+ +   N  F+I+  +G+  +
Sbjct: 2177 ------------------------ALDRDEGANGRVRYSIAAGDDNRDFTISEDAGVIRV 2212

Query: 353  TAKLDYEDVHHYIFVVQAQDT----GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY 408
               L++E    Y   VQA+D     G   +     V  N++D+NDN P+F   P    V 
Sbjct: 2213 AKNLNFERKARYRLQVQAEDCAPELGGEALVDAAEVVINLLDINDNAPVFLDSPYLAHVM 2272

Query: 409  ENVTLGTG--LASVHAVDLDS----GKLPFLLPIGDFDLL 442
            EN+    G  +  V A D D+     ++ + L  GD DL 
Sbjct: 2273 ENMLPPGGGFVMQVKAYDADTPPYNDQVRYFLKEGDTDLF 2312

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374399|gb|EFR21960.1| hypothetical protein AND_15952 [Anopheles darlingi]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 186/485 (38%), Positives = 258/485 (53%), Gaps = 94/485 (19%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+P+F    Y+ ++ E+ P  S V  V  TD D G N                 
Sbjct: 209 VIDLNDNAPIFDPMSYSNEIFENAPINSPVVTVSATDIDSGAN----------------- 251

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                 GR+EYSI +GD++E F I  SNGT+   + LDRETK +
Sbjct: 252 ----------------------GRVEYSITAGDEKEDFQIM-SNGTIRTRRMLDRETKGT 288

Query: 121 YNLVVMATDMAKPPQKRLSSTTQV-----------------------------SIVIRDV 151
           YNLV+ A D AK P+KRLSST QV                             SI ++DV
Sbjct: 289 YNLVITAQDCAKEPEKRLSSTVQVGTSGKRKAKFGSILMHPLAIISSPVVVQVSISLKDV 348

Query: 152 NDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSI----INSEATPFSLG 207
           ND APEF++ NET++ EN P+NTV+ A+KA+DRDEG+N YVEY +     +    PF++G
Sbjct: 349 NDLAPEFVSPNETSVAENIPINTVIMAIKAVDRDEGRNGYVEYQLDERSKDGTVVPFAVG 408

Query: 208 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYS 267
           P DGLLRV+  LDREIK+ Y L++ AKDRG+PSKS++++  I +LDENDN+PIFD K YS
Sbjct: 409 PADGLLRVSGSLDREIKAAYDLQVVAKDRGDPSKSTQSRIRINVLDENDNSPIFDPKQYS 468

Query: 268 ASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV 327
           A++ EN S+GA+VLQV   ++ +P  S  +      +DL        V  TD DEG NG 
Sbjct: 469 AAIAENASIGASVLQVGSHHEFTP-RSASINGGPGDQDL--------VSATDIDEGANGR 519

Query: 328 VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT------GKPMMSST 381
           + +S+ +   N  F+I+  SG+  +   L++E    Y   V+A+D       G  +   T
Sbjct: 520 IRFSIAAGDDNRDFTISEDSGVVRVAKNLNFERKSLYTITVRAEDCAGDTDGGAEVRFDT 579

Query: 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG--LASVHAVDLDS----GKLPFLLP 435
             +   + D+NDNPP F   P    + ENV    G  + +V A D DS     ++ + L 
Sbjct: 580 ARLSITITDINDNPPTFLDSPYLAYIMENVIPPNGGYVITVRAYDADSPPFNSQVRYFLK 639

Query: 436 IGDFD 440
            GD D
Sbjct: 640 EGDTD 644

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
FB|FBgn0001075	5147	ft "fat" [Drosophila melanogas	0.626	0.053	0.429	2.9e-72
MGI|MGI:3045256	4981	Fat4 "FAT tumor suppressor hom	0.490	0.043	0.448	7.8e-81
UNIPROTKB|F1NLP0	4964	FAT4 "Uncharacterized protein"	0.871	0.077	0.344	1.7e-43
UNIPROTKB|E2RR85	4982	FAT4 "Uncharacterized protein"	0.635	0.056	0.384	2e-63
UNIPROTKB|E1B949	4983	FAT4 "Uncharacterized protein"	0.635	0.056	0.384	1.4e-64
RGD|1564291	4981	Fat4 "FAT tumor suppressor hom	0.647	0.057	0.380	1.4e-62
UNIPROTKB|Q6V0I7	4981	FAT4 "Protocadherin Fat 4" [Ho	0.635	0.056	0.394	1.2e-65
UNIPROTKB|F1MQP6	2838	F1MQP6 "Uncharacterized protei	0.533	0.083	0.325	3.8e-65
UNIPROTKB|F1RX34	2824	DCHS2 "Uncharacterized protein	0.533	0.083	0.339	2.3e-63
UNIPROTKB|J9NZ92	2836	DCHS2 "Uncharacterized protein	0.515	0.080	0.330	1.3e-62

FB|FBgn0001075 ft "fat" [Drosophila melanogaster (taxid:7227)]

 Score = 548 (198.0 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
 Identities = 128/298 (42%), Positives = 178/298 (59%)

Query:     1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
             V D NDN+P+F    Y+ +V E++P  + V  V   D D G NG++ YS+ +   +  F 
Sbjct:  2017 VLDLNDNAPIFDPMSYSSEVFENVPIATEVVTVSAKDIDSGNNGLIEYSITAGDVDSEFG 2076

Query:    61 INPQSGIFTLTAKLDYEDVSDNGRLEYSI-VSGDD--EEIFTINPSNGTLSNLKHLDRET 117
             I+  +G       LD E      R  Y++ V+  D  +E  + +    T   LK+  R  
Sbjct:  2077 ID-SNGTIRTRRNLDREH-----RSTYTLTVTARDCADEFASFSELEETQLKLKY--RSP 2128

Query:   118 KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVA 177
             +  Y        +A   Q+RLSST +V+I+I+DVND  P FI+ANET I EN  +NTVV 
Sbjct:  2129 RK-YQQTRQEF-LAHQKQQRLSSTVKVTILIKDVNDEVPVFISANETAIMENVAINTVVI 2186

Query:   178 ALKAIDRDEGQNSYVEY--------SIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL 229
             A+KA+D DEG+N Y++Y         +  S+  PFSL P DG LRV   LDRE++S+Y L
Sbjct:  2187 AVKAVDNDEGRNGYIDYLMKEARDEDMGQSDPLPFSLNPTDGQLRVVDALDRELRSSYLL 2246

Query:   230 EIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTN 287
              I A+DRGEP +S+ ++  IR+LDENDN+P+FD K YSASV EN S+GA VLQVS T+
Sbjct:  2247 NITARDRGEPPQSTESQLLIRILDENDNSPVFDPKQYSASVAENASIGAMVLQVSATD 2304

GO:0005887 "integral to plasma membrane" evidence=ISS;NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;NAS

GO:0008283 "cell proliferation" evidence=IMP

GO:0007446 "imaginal disc growth" evidence=IMP

GO:0018149 "peptide cross-linking" evidence=IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS;IDA

GO:0004872 "receptor activity" evidence=ISS

GO:0045571 "negative regulation of imaginal disc growth" evidence=IMP;TAS

GO:0045317 "equator specification" evidence=IMP;NAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IGI;IMP;TAS

GO:0016318 "ommatidial rotation" evidence=TAS

GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IMP;TAS

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0007164 "establishment of tissue polarity" evidence=IMP;NAS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0040008 "regulation of growth" evidence=IGI;IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0001736 "establishment of planar polarity" evidence=IGI;IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0048105 "establishment of body hair planar orientation" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0035329 "hippo signaling cascade" evidence=IGI

GO:0046620 "regulation of organ growth" evidence=IGI

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0090176 "microtubule cytoskeleton organization involved in establishment of planar polarity" evidence=IMP

MGI|MGI:3045256 Fat4 "FAT tumor suppressor homolog 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 491 (177.9 bits), Expect = 7.8e-81, Sum P(3) = 7.8e-81
 Identities = 100/223 (44%), Positives = 141/223 (63%)

Query:    67 IFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVM 126
             +F +T   D +D   N +L YSI SGD    F ++  +G L  LK LDRE++S YNLV+ 
Sbjct:  1965 VFNVT---DADD-GVNSQLSYSIASGDSLGQFAVD-KHGVLKTLKALDRESQSFYNLVIQ 2019

Query:   127 ATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDE 186
               D+ +PP  R +ST QVSI++ DVNDN P F++   T IPEN+P++TVV   +A D D 
Sbjct:  2020 VHDLPQPPTSRFTSTAQVSIILLDVNDNPPMFLSPKLTYIPENTPIDTVVFKAQATDPDS 2079

Query:   187 GQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTK 246
             G NSY+EY+++N     FS+G +DG + +  +LDRE  SNY+L + A D+G+P  SS T+
Sbjct:  2080 GPNSYIEYTLLNPSGNKFSIGTIDGEVHLTGELDREEVSNYSLTVVATDKGQPPLSSSTE 2139

Query:   247 FFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDT-ND 288
               + +LD NDNNP+F    Y   + ENI  G  ++QVS   ND
Sbjct:  2140 VVVMVLDINDNNPVFAQAMYRVQIKENILTGTDIIQVSAADND 2182

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NLP0 FAT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 479 (173.7 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 146/424 (34%), Positives = 215/424 (50%)

Query:     1 VSDTNDNSPVFSEPVYA-FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV---VSDWAN 56
             VS+ ++    F  PV   F++   L   ++   + T  A++G     T  V   + D  N
Sbjct:  1858 VSEDDEEGMFFLNPVTGVFNLTRALDYEAQQYYILTIRAEDGGGQFATIRVYFNILD-IN 1916

Query:    57 D---VFSINPQS-----GIFTLTAKLDYE--DVSD--NGRLEYSIVSGDDEEIFTINPSN 104
             D   VFS+   S      +   +A L++   D  D  N +L +SI SGD    F I+ S 
Sbjct:  1917 DNPPVFSMTSYSTSLMENLAPGSAILNFSVTDADDGSNSQLSFSIASGDSMGHFGIDNS- 1975

Query:   105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
             G LS  + LDRE++S Y+LVV   DMA  P  R +ST QVSI++ DVND+ P FI+   T
Sbjct:  1976 GVLSIQQPLDRESQSFYSLVVQVHDMAPLPASRYTSTAQVSIILLDVNDSPPSFISPKLT 2035

Query:   165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK 224
              IPEN+P++T+V   +A D D G NSY+EYS++      FS+G +DG +R+  +LDRE  
Sbjct:  2036 YIPENTPIDTIVFKAQATDPDSGPNSYIEYSLLRPLGNKFSIGTIDGEVRLIGELDREAV 2095

Query:   225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
             SNYTL + A D+G+PS SS T   + +LD NDNNP+F  K Y   + EN   G  ++QV 
Sbjct:  2096 SNYTLTVVATDKGQPSLSSSTDVVVIVLDINDNNPLFAQKLYRVELEENTLTGTDLIQVL 2155

Query:   285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV-FSI 343
              T+ +     +  Y+  V  D       G  F  D+   V GV+T +   D      + +
Sbjct:  2156 ATDGDEGTNGQVRYSI-VSGD------TGNQFRIDS---VTGVITVAKPLDREKKPSYML 2205

Query:   344 NPQSG-------IFTLTAKLDYEDVHHYI--FVVQAQDTGKPMMSSTVT-VYFNVVDLND 393
             + QS          T T  +  +DV+ Y+  F +   +   P    T+  V   VV  +D
Sbjct:  2206 SVQSSDRGSSPRTDTTTVNIVLKDVNDYVPTFELSPYNVNVPENLETLPKVILQVVARDD 2265

Query:   394 NPPL 397
             +  L
Sbjct:  2266 DQGL 2269

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RR85 FAT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 489 (177.2 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 115/299 (38%), Positives = 168/299 (56%)

Query:     1 VSDTNDNSPVFSEPVYA-FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV---VSDWAN 56
             V++ +++   F  PV   F++   L   ++   + T  A++G     T  V   V D  N
Sbjct:  1880 VNEDDEDGIFFLNPVTGVFNLTRVLDYEAQQYYILTVRAEDGGGQFTTIRVYFNVLD-VN 1938

Query:    57 D---VFSINPQS---------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN 104
             D   +FS+N  S         G   L   +   D   N +L +SI SGD    FT++  N
Sbjct:  1939 DNPPIFSLNSYSTSLMENLPLGSTVLVFNVTDADDGINSQLAFSIASGDSLSQFTVD-KN 1997

Query:   105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
             G L  LK LDRE++S YNLVV   D+ + P  R +ST  VSI++ DVNDN P F++   T
Sbjct:  1998 GVLKVLKSLDRESQSFYNLVVQVHDLPQLPASRFTSTAHVSIILLDVNDNPPAFLSPKLT 2057

Query:   165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK 224
              IPEN+P++T+V   +A D D G NSY+EY+++N     FS+G +DG +R+  +LDRE  
Sbjct:  2058 YIPENTPIDTIVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEV 2117

Query:   225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
             SNYTL + A D+G+P+ SS T+  + +LD NDNNP+F    Y   + EN   G  ++QV
Sbjct:  2118 SNYTLTVVATDKGQPALSSSTEVVVMVLDINDNNPVFMQALYKVEINENTLTGTDIIQV 2176

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1B949 FAT4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 493 (178.6 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 115/299 (38%), Positives = 167/299 (55%)

Query:     1 VSDTNDNSPVFSEPVYA-FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV---VSDWAN 56
             V++ +++   F  PV   F++   L   ++   + T  A++G     T  V   + D  N
Sbjct:  1880 VNEDDEDGIFFLNPVTGVFNLTRMLDYETQQYYILTVRAEDGGGQFTTIRVYFNILD-VN 1938

Query:    57 D---VFSINPQS---------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN 104
             D   +FS+N  S         G   L   +   D   N +L YSI SGD    FT++  N
Sbjct:  1939 DNPPIFSLNSYSTSLMENLPLGSTVLVFNVTDADDGINSQLAYSIASGDSLGQFTVD-KN 1997

Query:   105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
             G L  LK LDRE++S YNLVV   D+ + P  R +ST Q+SI++ DVNDN P F++   T
Sbjct:  1998 GVLKVLKPLDRESQSFYNLVVQVHDLPQLPASRFTSTAQISIILLDVNDNPPTFLSPKLT 2057

Query:   165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK 224
              IPEN+P++T+V   +A D D G NSY+EY+++N     F++G +DG +R+  +LDRE  
Sbjct:  2058 YIPENTPIDTIVFKAQATDPDSGPNSYIEYTLLNPSGNKFTIGTIDGEVRLTGELDREEV 2117

Query:   225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
             SNYTL + A D+G PS SS T+  + +LD NDNNP+F    Y   + EN   G  + QV
Sbjct:  2118 SNYTLTVVATDKGHPSLSSSTEVVVMVLDINDNNPVFAQAMYKVEINENTLTGTDITQV 2176

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

RGD|1564291 Fat4 "FAT tumor suppressor homolog 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 484 (175.4 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 116/305 (38%), Positives = 167/305 (54%)

Query:     1 VSDTNDNSPVFSEPVYA-FDVLEDLPRGSRVGQVFTTDADEGVNGVVT---YSVVSDWAN 56
             V + + +   F  PV   F++   L    +   + T  A++G     T   Y  + D  N
Sbjct:  1880 VEEDDGDGVFFLNPVTGVFNLTRALDYERQQYYILTVRAEDGGGQFTTIRAYFNILD-IN 1938

Query:    57 D---VFSINPQS---------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN 104
             D   VFS++  S         G   L   +   D   N +L YSI SGD    F ++  +
Sbjct:  1939 DNPPVFSLSSYSTSLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVD-KH 1997

Query:   105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
             G L  LK LDRE++S YNLV+   D+ +PP  R +ST QVSI++ DVNDN P F++   T
Sbjct:  1998 GVLKALKALDRESQSFYNLVIQVHDLPQPPASRFTSTAQVSIILLDVNDNPPMFLSPKLT 2057

Query:   165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK 224
              IPEN+P++TVV   +A D D G NSY+EY+++N     FS+G +DG + +  +LDRE  
Sbjct:  2058 YIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPAGNKFSIGTIDGEVHLTGELDREEV 2117

Query:   225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
             SNY+L + A D+G+P  SS T+  + +LD NDNNP+F    Y   + EN   G  ++QVS
Sbjct:  2118 SNYSLTVVATDKGQPPLSSSTEVVVMVLDINDNNPVFAQAMYRVQIKENTLTGTDIIQVS 2177

Query:   285 DT-ND 288
                ND
Sbjct:  2178 AADND 2182

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6V0I7 FAT4 "Protocadherin Fat 4" [Homo sapiens (taxid:9606)]

 Score = 495 (179.3 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
 Identities = 118/299 (39%), Positives = 168/299 (56%)

Query:     1 VSDTNDNSPVFSEPVYA-FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV---VSDWAN 56
             V++ +++   F  P+   F++   L    +   + T  A++G     T  V   + D  N
Sbjct:  1880 VNEDDEDGIFFLNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILD-VN 1938

Query:    57 D---VFSINPQS---------GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN 104
             D   +FS+N  S         G   L   +   D   N +L YSI SGD    FT++  N
Sbjct:  1939 DNPPIFSLNSYSTSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVD-KN 1997

Query:   105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
             G L  LK LDRE++S YNLVV   D+ + P  R +ST QVSI++ DVNDN P F++   T
Sbjct:  1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query:   165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK 224
              IPEN+P++TVV   +A D D G NSY+EY+++N     FS+G +DG +R+  +LDRE  
Sbjct:  2058 YIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDGEVRLTGELDREEV 2117

Query:   225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
             SNYTL + A D+G+PS SS T+  + +LD NDNNPIF    Y   + EN   G  ++QV
Sbjct:  2118 SNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINENTLTGTDIIQV 2176

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MQP6 F1MQP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 3.8e-65, Sum P(3) = 3.8e-65
 Identities = 83/255 (32%), Positives = 138/255 (54%)

Query:    62 NPQSG-IFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
             N + G ++T  A  D  D   NG + Y I+ G+ +E F +N  +G LS  + LDRE  S+
Sbjct:  1307 NQEPGLVYTFLAS-DM-DAGSNGAVTYHIIDGNTDEYFAVNEMSGELSTTRALDREEVSN 1364

Query:   121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAAL 179
             + LV++ +D+  PPQ   SST Q+ + + D ND++P F     + ++ E++ + T V  L
Sbjct:  1365 FTLVILCSDLGSPPQ---SSTAQLQVRVLDDNDHSPSFPRLQYQASVREDAQVGTTVLVL 1421

Query:   180 KAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-E 238
              + D DEG N    YS+++  +  F++ PV G LR ++ LDRE +S + L+  A+D G +
Sbjct:  1422 SSADEDEGLNGQTMYSLVHESSGAFTIDPVAGTLRTSRALDREARSEHVLKAVARDCGVQ 1481

Query:   239 PSKSSRTKFFIRLLDENDNNPIFDSKSY----SASVPENISVGATVLQVSDTND--NSPV 292
              S+S+     + + D NDN+P+ +        S+  P N +  A +L+ SD +   N  V
Sbjct:  1482 GSRSTTVVIKVHVTDVNDNSPVLEQNPLDIFLSSQSPTNQT--AAILRASDPDSGPNGTV 1539

Query:   293 ---FSEPVYAFDVLE 304
                F+EP     + E
Sbjct:  1540 TFSFAEPQSVLSINE 1554

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1RX34 DCHS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 2.3e-63, Sum P(3) = 2.3e-63
 Identities = 87/256 (33%), Positives = 143/256 (55%)

Query:    62 NPQSG-IFTLTAKLDYEDVSDNGRLEYSIV-SGDDEEIFTINPSNGTLSNLKHLDRETKS 119
             N + G I+T+ A  D  D  DNG + Y IV  G+ +  F I+ ++G LS  + LDRE  S
Sbjct:  1290 NQEPGLIYTVLAS-DL-DAGDNGAVWYRIVVDGNTDGYFAIHEASGELSATRALDREQVS 1347

Query:   120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAA 178
             ++ LV++ +D+  PP+   SS  Q+ + + D ND++P F   + ++++ E++ + TV+  
Sbjct:  1348 NFTLVILCSDLGDPPR---SSVAQLQVRVLDDNDHSPSFPRLHHQSSVREDADVGTVLLV 1404

Query:   179 LKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG- 237
             L A D+DEG N   EY +++  +  F++ PV G LR +  LDRE +S YT    A+D G 
Sbjct:  1405 LSAADQDEGLNGQTEYFLMDEASGAFTIDPVAGTLRTSLHLDREARSEYTFRAVARDCGV 1464

Query:   238 EPSKSSRTKFFIRLLDENDNNPIFDSKSY----SASVPENISVGATVLQVSDTN--DNSP 291
             + S+SS     + + D NDN+P+++        S+  P N ++  T+L  SD +   N  
Sbjct:  1465 QSSRSSTVIIKVHVTDVNDNDPVWEQNPVDIFLSSQTPTNQTI--TILGASDPDLGPNGT 1522

Query:   292 V---FSEPVYAFDVLE 304
             V   F+EP   F + E
Sbjct:  1523 VIFSFAEPQSMFSMNE 1538

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9NZ92 DCHS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.3e-62, Sum P(3) = 1.3e-62
 Identities = 80/242 (33%), Positives = 134/242 (55%)

Query:    62 NPQSGI-FTLTAKLDYEDVSDNGRLEYSIVS-GDDEEIFTINPSNGTLSNLKHLDRETKS 119
             N + G+ +T+ A  D  D  +NG + Y I++ G+ +E F IN ++G LS  + LDRE  S
Sbjct:  1306 NQEPGVLYTVLAS-DM-DAGNNGAVRYHIIADGNTDEYFAINETSGELSTTRALDREQVS 1363

Query:   120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAA 178
             ++ LV++ +D+  PP+   SS  Q+ + + D ND+ P F T   + ++ E++ + TVV  
Sbjct:  1364 NFTLVILCSDLGDPPR---SSLVQLQVRVLDDNDHGPSFPTLLYQASVREDAQVGTVVLM 1420

Query:   179 LKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG- 237
             L A+DRDEG N   EY +++  +  F++ PV G LR    LDRE +S +T    A+D   
Sbjct:  1421 LSAVDRDEGLNGQTEYFLVDEASGAFTIDPVTGALRTRHTLDREARSQHTFRAVARDCSV 1480

Query:   238 EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGAT--VLQVSDTN---DNSPV 292
             + S+S+     + + D NDN+P+++   +   +        T  VL  SD +   + + V
Sbjct:  1481 QGSRSTTVIIKVHVTDVNDNDPVWEQNPFEIFLAPQAPTNQTTAVLTASDPDLGPNGTVV 1540

Query:   293 FS 294
             FS
Sbjct:  1541 FS 1542

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	442
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	2e-28
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	1e-26
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	6e-25
smart00112	81	smart00112, CA, Cadherin repeats	6e-23
smart00112	81	smart00112, CA, Cadherin repeats	1e-22
pfam00028	92	pfam00028, Cadherin, Cadherin domain	4e-21
smart00112	81	smart00112, CA, Cadherin repeats	7e-20
pfam00028	92	pfam00028, Cadherin, Cadherin domain	3e-19
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-18

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score =  107 bits (269), Expect = 2e-28
 Identities = 44/98 (44%), Positives = 55/98 (56%)

Query: 297 VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 356
            Y   V E+ P G+ V  V  TD D G NG VTYS+VS   + +FSI+P +G  T    L
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPL 60

Query: 357 DYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDN 394
           D E+   Y   V A D G P +SST TV   V+D+NDN
Sbjct: 61  DREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score =  102 bits (256), Expect = 1e-26
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 1/96 (1%)

Query: 163 ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDR 221
           E ++PEN+P  TVV  + A D D G+N  V YSI+  +E   FS+ P  G +  A+ LDR
Sbjct: 3   EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDR 62

Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 257
           E +S+YTL + A D G P  SS     I +LD NDN
Sbjct: 63  EEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 97.8 bits (244), Expect = 6e-25
 Identities = 52/140 (37%), Positives = 65/140 (46%), Gaps = 42/140 (30%)

Query: 15  VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 74
            Y   V E+ P G+ V  V  TD D G NG VTYS                         
Sbjct: 1   SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYS------------------------- 35

Query: 75  DYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP 134
                         IVSG+++ +F+I+PS G ++  K LDRE +SSY L V ATD   PP
Sbjct: 36  --------------IVSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLTVTATDGGGPP 81

Query: 135 QKRLSSTTQVSIVIRDVNDN 154
              LSST  V+I + DVNDN
Sbjct: 82  ---LSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 91.6 bits (228), Expect = 6e-23
 Identities = 39/79 (49%), Positives = 51/79 (64%)

Query: 318 TDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM 377
           TDAD G NG VTYS++S   + +FSI+P++G  T T  LD E+   Y   V+A D G P 
Sbjct: 3   TDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPP 62

Query: 378 MSSTVTVYFNVVDLNDNPP 396
           +SST TV   V+D+NDN P
Sbjct: 63  LSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 90.9 bits (226), Expect = 1e-22
 Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 77  EDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 136
            D  +NG++ YSI+SG+D+ +F+I+P  G ++  K LDRE +  Y L V ATD   PP  
Sbjct: 5   ADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPP-- 62

Query: 137 RLSSTTQVSIVIRDVNDNAP 156
            LSST  V+I + DVNDNAP
Sbjct: 63  -LSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 36/91 (39%), Positives = 48/91 (52%)

Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
           Y+  V E+ P G+ V  V  TDAD G NG + YS++       F I+P +G  + T  LD
Sbjct: 1   YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLD 60

Query: 358 YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNV 388
            E +  Y   V A D+G P +SST TV   V
Sbjct: 61  RESIGEYELTVLATDSGGPPLSSTTTVTITV 91

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 83.2 bits (206), Expect = 7e-20
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 180 KAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE 238
            A D D G+N  V YSI+  ++   FS+ P  G +   + LDRE +  YTL ++A D G 
Sbjct: 1   SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60

Query: 239 PSKSSRTKFFIRLLDENDNNP 259
           P  SS     I +LD NDN P
Sbjct: 61  PPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRVAQKLDREI 223
           ++PEN+P+ T V  + A D D G N  + YSI+       F + P  G L   + LDRE 
Sbjct: 4   SVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRES 63

Query: 224 KSNYTLEIKAKDRGEPSKSSRTKFFIRLL 252
              Y L + A D G P  SS T   I +L
Sbjct: 64  IGEYELTVLATDSGGPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 44/133 (33%), Positives = 54/133 (40%), Gaps = 42/133 (31%)

Query: 16  YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 75
           Y+  V E+ P G+ V  V  TDAD G                                  
Sbjct: 1   YSASVPENAPVGTEVLTVTATDADLG---------------------------------- 26

Query: 76  YEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ 135
                 NGR+ YSI+ G     F I+P  G LS  K LDRE+   Y L V+ATD   PP 
Sbjct: 27  -----PNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESIGEYELTVLATDSGGPPL 81

Query: 136 KRLSSTTQVSIVI 148
              SSTT V+I +
Sbjct: 82  ---SSTTTVTITV 91

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	100.0
KOG1834|consensus	952		99.78
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.77
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.72
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.68
KOG1834|consensus	952		99.64
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.64
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.54
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.45
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.41
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.11
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	97.02
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.98
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	96.82
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	96.73
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	95.95
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	95.64
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	92.98
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	92.43
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	90.75
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	88.56
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	88.08
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.93
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	87.14

>KOG4289|consensus

Probab=100.00  E-value=1.3e-74  Score=582.66  Aligned_cols=433  Identities=37%  Similarity=0.594  Sum_probs=416.9

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS   80 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~   80 (442)
                      |.|+|||.|+|.+.+|..++.||.++|..|.++.|+|.|.++|+.+.|++..+++...|.||+++|.|+..+.||+|...
T Consensus       259 V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~  338 (2531)
T KOG4289|consen  259 VLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREELE  338 (2531)
T ss_pred             EeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCccCHHhhh
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             ------------------------------------------------------------------CCCcEEEEEEeCCC
Q psy6838          81 ------------------------------------------------------------------DNGRLEYSIVSGDD   94 (442)
Q Consensus        81 ------------------------------------------------------------------~~~~i~y~i~~~~~   94 (442)
                                                                                        .|+.+.|+|.+|..
T Consensus       339 ~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~  418 (2531)
T KOG4289|consen  339 SYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNG  418 (2531)
T ss_pred             heEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCc
Confidence                                                                              78899999999999


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      -+.|.||..+|+|.+..+||+|.. .|+++|+|.|++.|+   ++.+.-+.|+|.|+|||+|.|... ...+|.|+.+.|
T Consensus       419 ~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPp---Lsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg  494 (2531)
T KOG4289|consen  419 RGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPP---LSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLG  494 (2531)
T ss_pred             cccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCC---ccCCCceEEEEEecCCCCceeEechhhhhhhhccccc
Confidence            999999999999999999999998 999999999999987   888888889999999999999876 889999999999


Q ss_pred             cEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEe
Q psy6838         174 TVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       174 ~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  253 (442)
                      ..++.+.|.|.|.|.|+.+.|++.+-.  +|.|+..+|+|++.+.||||+.+.|.|.|.|+|.|.|++++.+.|.|.+.|
T Consensus       495 ~~v~~vqaidadsg~na~l~y~laG~~--pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~d  572 (2531)
T KOG4289|consen  495 YLVCHVQAIDADSGENARLHYSLAGVG--PFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLD  572 (2531)
T ss_pred             ceEEEEecccCCCCcccceeeeeccCC--CeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecc
Confidence            999999999999999999999998864  899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeccceeeeccccccccceEEE---------------------------------------------------
Q psy6838         254 ENDNNPIFDSKSYSASVPENISVGATVLQ---------------------------------------------------  282 (442)
Q Consensus       254 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~---------------------------------------------------  282 (442)
                      +|||.|.|++..|++.+.|+.+.|+.|++                                                   
T Consensus       573 vndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~v  652 (2531)
T KOG4289|consen  573 VNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDANSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQERQYV  652 (2531)
T ss_pred             cCCCCCccccCceEEEecCCccccceEEEEEEeccccccceEEEecCCcccccceeeccCCcceEEeecchhhcccceEE
Confidence            99999999999999999999999998876                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy6838         283 --------------------------------------------------------------------------------  282 (442)
Q Consensus       283 --------------------------------------------------------------------------------  282 (442)
                                                                                                      
T Consensus       653 l~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y~led~~Frid~ds  732 (2531)
T KOG4289|consen  653 LAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGTTVVTLSASDEDTGENARITYILEDEAFRIDPDS  732 (2531)
T ss_pred             EEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCCceeEEEecccCCCCccceEEEEecccceeecCCC
Confidence                                                                                            


Q ss_pred             ----------------------------------------EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCC
Q psy6838         283 ----------------------------------------VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE  322 (442)
Q Consensus       283 ----------------------------------------v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~  322 (442)
                                                              |.++||++|.|..+.|+++|.|+.|+++.+++|+|+|.|.
T Consensus       733 g~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~  812 (2531)
T KOG4289|consen  733 GAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADS  812 (2531)
T ss_pred             CceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCC
Confidence                                                    6789999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEEeC-CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCC
Q psy6838         323 GVNGVVTYSVVSD-WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPM  401 (442)
Q Consensus       323 ~~~~~i~y~l~~~-~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~  401 (442)
                      +.|+.+.|.+.++ +..+.|.|++++|.|++.+.||||....|.|.+.|.|.|.|++++.+.|+|+|.|+|||||.|.+.
T Consensus       813 g~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~rLdRE~~avy~L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~  892 (2531)
T KOG4289|consen  813 GPNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLRRLDRENVAVYVLAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQD  892 (2531)
T ss_pred             CCCceEEEEecCCCCCCCceEEccCcceeehhhhhcchheeEEEEEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCc
Confidence            9999999999755 345799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCC
Q psy6838         402 PPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDF  439 (442)
Q Consensus       402 ~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~  439 (442)
                      +++..|.||.++|..+++|+|.|||+|   .|+|+|.+|+.
T Consensus       893 e~e~~I~enspvgs~va~i~a~dpdEG~NA~IsYqIvgg~d  933 (2531)
T KOG4289|consen  893 ELELFIEENSPVGSVVALITADDPDEGPNAHISYQIVGGND  933 (2531)
T ss_pred             ceeeEEeecCccceeeEEEEccCCCcCCcceEEEeeccCcc
Confidence            999999999999999999999999999   89999999975

>KOG4289|consensus

Probab=100.00  E-value=5.7e-67  Score=527.65  Aligned_cols=425  Identities=36%  Similarity=0.577  Sum_probs=393.4

Q ss_pred             CCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCC---CCCcEEEcCCccEEEEeeeccccccc--
Q psy6838           6 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDW---ANDVFSINPQSGIFTLTAKLDYEDVS--   80 (442)
Q Consensus         6 Dn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~---~~~~f~id~~tg~~~~~~~ld~~~~~--   80 (442)
                      -|+|.|.+..|+..++||.|+||.|+++.|.|+|.   +.+.|++..--   ..++|+||+.+|++++...||+|.+.  
T Consensus       159 ~~~~~Fqq~~Yq~~lpEn~pagT~iasv~A~~~~a---~rl~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~H  235 (2531)
T KOG4289|consen  159 ANAVQFQQPNYQKELPENEPAGTIIASVKASDPDA---GRLYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETH  235 (2531)
T ss_pred             CCCccCCCcchhccCcCCCCCCceeEEEEecCCCc---CceEEEeeeccchhccccEeeccccccchhhhhhhhhhhhee
Confidence            46899999999999999999999999999999994   47999997542   35899999999999999999999876  


Q ss_pred             ----------------------------------------------------------------CCCcEEEEEEeCCCCC
Q psy6838          81 ----------------------------------------------------------------DNGRLEYSIVSGDDEE   96 (442)
Q Consensus        81 ----------------------------------------------------------------~~~~i~y~i~~~~~~~   96 (442)
                                                                                      +|..|+|++.+|.+..
T Consensus       236 vlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~  315 (2531)
T KOG4289|consen  236 VLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKN  315 (2531)
T ss_pred             EEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccc
Confidence                                                                            7899999999999999


Q ss_pred             cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcE
Q psy6838          97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTV  175 (442)
Q Consensus        97 ~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~  175 (442)
                      .|.|++.+|.|.+..+||||+...|.|.|.|+|.|.++..   .++.|.|+|.|+|||+|+|... |.+.|.|+..++++
T Consensus       316 ~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp---~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~av  392 (2531)
T KOG4289|consen  316 VFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGP---RTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAV  392 (2531)
T ss_pred             eeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCC---ceEEEEEEEEecCCCCccccccceEEEecccCCCCce
Confidence            9999999999999999999999999999999999998754   3899999999999999999987 99999999999999


Q ss_pred             EEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEeC
Q psy6838         176 VAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE  254 (442)
Q Consensus       176 v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~  254 (442)
                      |.+|+|+|.|.|.|+.+.|+|.+++ .+.|.||..||+|.+..+||+|.. .|++.|+|.|+|.|+++.+.-+.|.|.|+
T Consensus       393 vlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel~vv~plD~e~~-~ytl~IrAqDggrPpLsn~sgl~iqVlDI  471 (2531)
T KOG4289|consen  393 VLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGELDVVEPLDFENS-EYTLRIRAQDGGRPPLSNTSGLVIQVLDI  471 (2531)
T ss_pred             EEEEEecccCCCcCceEEEEeeccCccccEEEecccceEEEeccccccCC-eeEEEEEcccCCCCCccCCCceEEEEEec
Confidence            9999999999999999999999998 678999999999999999999998 99999999999999999999999999999


Q ss_pred             CCCCCeeeccceeeeccccccccceEEE----------------------------------------------------
Q psy6838         255 NDNNPIFDSKSYSASVPENISVGATVLQ----------------------------------------------------  282 (442)
Q Consensus       255 nd~~P~f~~~~~~~~v~e~~~~g~~v~~----------------------------------------------------  282 (442)
                      |||+|+|...++++++.|+.+.|..++.                                                    
T Consensus       472 NDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~  551 (2531)
T KOG4289|consen  472 NDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAGVGPFQINNGSGWITVTKELDRETVEHYSLGVE  551 (2531)
T ss_pred             CCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeeccCCCeeEecCCceEEEeecccccccceEEEEEE
Confidence            9999999999999999999999988765                                                    


Q ss_pred             ------------------EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCC------
Q psy6838         283 ------------------VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN------  338 (442)
Q Consensus       283 ------------------v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~------  338 (442)
                                        +.++||+.|.|.+..|.+++.|++|.|+.|.+++|.|.|.  +..++|.|.+++..      
T Consensus       552 ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~--~s~ityqi~g~ntrn~Fsi~  629 (2531)
T KOG4289|consen  552 ARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDA--NSVITYQITGGNTRNRFSIS  629 (2531)
T ss_pred             EcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEecccc--ccceEEEecCCcccccceee
Confidence                              5678999999999999999999999999999999999995  56688877653310      


Q ss_pred             --------------------------------------------------------------------------------
Q psy6838         339 --------------------------------------------------------------------------------  338 (442)
Q Consensus       339 --------------------------------------------------------------------------------  338 (442)
                                                                                                      
T Consensus       630 si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~tvvtlsasd~  709 (2531)
T KOG4289|consen  630 SIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGTTVVTLSASDE  709 (2531)
T ss_pred             ccCCcceEEeecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccCCeeEeeccCCcCCceeEEEecccC
Confidence                                                                                            


Q ss_pred             --------------CCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCe
Q psy6838         339 --------------DVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN  404 (442)
Q Consensus       339 --------------~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~  404 (442)
                                    ..|+||+++|.+++...||||.+-.|++.|+|.|.+.|.+.++.+|.|.|.|+|||+|+|..+.|.
T Consensus       710 D~geNARI~y~led~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt  789 (2531)
T KOG4289|consen  710 DTGENARITYILEDEAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYT  789 (2531)
T ss_pred             CCCccceEEEEecccceeecCCCCceEEeeeeecccceeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhce
Confidence                          127999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCC
Q psy6838         405 IPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDF  439 (442)
Q Consensus       405 ~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~  439 (442)
                      ++|.|++++++.+++|+|+|+|.+   .+.|.+.+|+.
T Consensus       790 ~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d  827 (2531)
T KOG4289|consen  790 GSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDD  827 (2531)
T ss_pred             eEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCC
Confidence            999999999999999999999999   56666666543

>KOG1219|consensus

Probab=100.00  E-value=3.4e-64  Score=521.81  Aligned_cols=437  Identities=32%  Similarity=0.507  Sum_probs=410.7

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS   80 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~   80 (442)
                      |.|+|||+|.|....|.++++|+.|+|+.+....|+|+|.|.||.++|+|.. .....|+|++.+|.+++.++||||...
T Consensus       407 vld~n~n~pif~r~~~~ve~penvpig~~vl~~satDpdegengyvtysia~-~~~lPFaI~~~~GilsvS~kldrel~r  485 (4289)
T KOG1219|consen  407 VLDVNDNSPIFPRDVYRVEIPENVPIGTRVLISSATDPDEGENGYVTYSIAD-DTMLPFAIDQSDGILSVSGKLDRELRR  485 (4289)
T ss_pred             EeccCCCCCcceeeeeeeecCCCCCcceEEEEEeccCCCcCcCceEEEEecC-CccCceEeccccceEEeccccCccccc
Confidence            5799999999999999999999999999999999999999999999999986 345789999999999999999999532


Q ss_pred             --------------------------------------------------------------------------------
Q psy6838          81 --------------------------------------------------------------------------------   80 (442)
Q Consensus        81 --------------------------------------------------------------------------------   80 (442)
                                                                                                      
T Consensus       486 vYtfRv~Asd~G~per~~e~~~~I~ildlNDn~P~F~~~n~t~t~~~~~~vg~~l~tvsAtD~De~ellky~i~~~nel~  565 (4289)
T KOG1219|consen  486 VYTFRVRASDWGVPERESEVHLNILILDLNDNPPNFEIRNCTGTINGDPKVGTKLFTVSATDLDELELLKYRILPGNELS  565 (4289)
T ss_pred             eEEEEEEEeccCCcchhceeeEEEEEeccCCCCCcceeeecccccccCCCCCcEEEEeeccccCcccceeEEEEeCCcCc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy6838          81 --------------------------------------------------------------------------------   80 (442)
Q Consensus        81 --------------------------------------------------------------------------------   80 (442)
                                                                                                      
T Consensus       566 feln~nSgeisLvr~n~t~~~~s~~slv~a~d~G~p~as~t~lni~~~k~~Tgv~~~~~p~Ilq~~e~~~fPqf~s~fP~  645 (4289)
T KOG1219|consen  566 FELNSNSGEISLVRQNNTECLQSCESLVIAADDGVPPASPTLLNITVMKYGTGVGNEHEPNILQRFENKHFPQFPSDFPF  645 (4289)
T ss_pred             eeeccCCCeEEEEEccccccccccceEEEehhcCCCcCCceeeEEEEEecccccccccChhHhhhhccccCccccccCCc
Confidence                                                                                            


Q ss_pred             -------------------------CCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCC
Q psy6838          81 -------------------------DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ  135 (442)
Q Consensus        81 -------------------------~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~  135 (442)
                                               -|+.++|-|..|..+..|.|+..+|.|.+.++||+|...+|.|.|+|.|.|.|. 
T Consensus       646 iI~v~Edvpigt~la~L~atD~Dtgfng~l~yvI~dgne~~~~~Id~qsg~itvas~ld~~~t~~yiLnvta~D~gtPq-  724 (4289)
T KOG1219|consen  646 IIVVPEDVPIGTTLAILSATDSDTGFNGKLVYVIEDGNESICFLIDRQSGNITVASPLDNENTEQYILNVTAYDLGTPQ-  724 (4289)
T ss_pred             eEEccccCCCCceEEEEeccCCCCCcCceEEEEEeCCccceEEEEecccceEEEecchhhhhhheeEEEEEEecCCCch-
Confidence                                     578899999999988999999999999999999999999999999999999875 


Q ss_pred             CCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEE
Q psy6838         136 KRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLR  214 (442)
Q Consensus       136 ~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~  214 (442)
                        .++.....|.|.|.|||+|+|... |.++|.|+..+|+.|+++.|.|.|.|+|+.++|+|.... ..|+||+.+|.+.
T Consensus       725 --kss~r~l~v~vkd~ndn~p~f~e~sy~vtvsedtepgs~Ia~vetnd~D~g~NG~v~fsL~n~s-dvfsIdp~tGivv  801 (4289)
T KOG1219|consen  725 --KSSWRLLLVFVKDYNDNTPIFVERSYHVTVSEDTEPGSFIAHVETNDTDGGNNGMVSFSLLNKS-DVFSIDPFTGIVV  801 (4289)
T ss_pred             --hhceeeEEEEEEecccCCccccccceEEEEecCCCCCceEEEEEecccCCCCCceEEEEecCCc-ceEEecCcccEEE
Confidence              467788889999999999999876 999999999999999999999999999999999999954 6799999999999


Q ss_pred             EcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEE------------
Q psy6838         215 VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ------------  282 (442)
Q Consensus       215 ~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~------------  282 (442)
                      +.++||||.+..|+|.|+|+|.+.|.+.+...+.|.|.|+|||+|.|....++..++|+.+.|+.+..            
T Consensus       802 ~~~sLdrE~q~~y~l~I~a~dqp~pq~~svv~l~vsvedVndnpPkci~~hsr~kipedlp~gt~~~~l~A~d~diGq~~  881 (4289)
T KOG1219|consen  802 TSKSLDREGQTSYHLKIEARDQPPPQLFSVVELDVSVEDVNDNPPKCIIRHSRSKIPEDLPYGTVTWQLVALDPDIGQLG  881 (4289)
T ss_pred             eccccCcccCceeEEEEEEcCCCCCceEEEEEEEEEEeeccCCCCccccccccccCcccCCCceEEEEhhhcCcccCcCc
Confidence            99999999999999999999999888999999999999999999999999999999999999887644            


Q ss_pred             -----------------------------------------------------------Eeec--CCCCCccCCcceeEE
Q psy6838         283 -----------------------------------------------------------VSDT--NDNSPVFSEPVYAFD  301 (442)
Q Consensus       283 -----------------------------------------------------------v~~~--n~~~p~~~~~~~~~~  301 (442)
                                                                                 +.++  |-++|+|..-.-..+
T Consensus       882 kvry~l~~~~v~~rvd~~sGavfi~~~LDf~k~~fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~  961 (4289)
T KOG1219|consen  882 KVRYYLTDDTVGERVDFPSGAVFIGKPLDFEKSDFYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGH  961 (4289)
T ss_pred             eeEEEEecCccccccccccccEEEecccccccccceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeee
Confidence                                                                       2223  457999999999999


Q ss_pred             EecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEE
Q psy6838         302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSST  381 (442)
Q Consensus       302 v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~  381 (442)
                      |.||+|.|+.+++|.|.|.|.|..+.+.|+|..|+.-+.|+|+.++|.|++.+.||+|....|.|+|.|.|.|.+++++.
T Consensus       962 V~EnapiGT~vi~i~A~dedsgldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~YwltveA~D~gt~~~ssv 1041 (4289)
T KOG1219|consen  962 VLENAPIGTIVIRIQARDEDSGLDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSSYWLTVEAKDLGTVPLSSV 1041 (4289)
T ss_pred             EeecCCcceEEEEEEEecCCCCccceEEEEEEcCCcceeEEecCCcceEeechhhchhhcceEEEEEEEEecCCCccccc
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCC-CCC
Q psy6838         382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDF-DLL  442 (442)
Q Consensus       382 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~-~~f  442 (442)
                      +.+.|.|.|+|||+|+|.+.-|.++|.||++.+..|.++.|.|+|..   .|.|.|.+||. |+|
T Consensus      1042 ~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF 1106 (4289)
T KOG1219|consen 1042 CEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFF 1106 (4289)
T ss_pred             eeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccCCccceE
Confidence            99999999999999999999999999999999999999999999955   99999999998 555

>KOG1219|consensus

Probab=100.00  E-value=5.5e-62  Score=505.50  Aligned_cols=429  Identities=35%  Similarity=0.535  Sum_probs=398.1

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCC-CCcEEEcCCccEEEEeeecccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA-NDVFSINPQSGIFTLTAKLDYEDV   79 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~-~~~f~id~~tg~~~~~~~ld~~~~   79 (442)
                      |.|||||+|+|.+..|.++++|++++|+.|.++.|+|.|.  |..+.|+|.+++. ...|+|+..||.+++.++||||..
T Consensus      2168 V~dIndn~PvFeqlsYt~sisE~s~igt~viqilATdsDs--n~~isYsl~g~s~~sk~f~In~sTG~it~~g~ldyE~~ 2245 (4289)
T KOG1219|consen 2168 VGDINDNPPVFEQLSYTISISENSKIGTKVIQILATDSDS--NREISYSLEGNSEISKPFRINVSTGWITVAGKLDYEEN 2245 (4289)
T ss_pred             ecccCCCCchhheeeEEEEccCCCccCceEEEEEeccCCC--CCceEEEeecCCccccceEEecccceEEEeeecChhhc
Confidence            6799999999999999999999999999999999999997  8999999998654 578999999999999999999987


Q ss_pred             c-------------------------------------------------------------------------------
Q psy6838          80 S-------------------------------------------------------------------------------   80 (442)
Q Consensus        80 ~-------------------------------------------------------------------------------   80 (442)
                      .                                                                               
T Consensus      2246 q~f~~fvratdggk~lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ey~~~~~l~ 2325 (4289)
T KOG1219|consen 2246 QEFRFFVRATDGGKPLSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKLEYNSNHFLI 2325 (4289)
T ss_pred             ceEEEEEEEccCCCcccccEEEEEEehhcCCCCchhccccceeecCCCccceeEEEEEEeccCCccchhhhhhcccceee
Confidence            6                                                                               


Q ss_pred             ------------------------------------------------------------------------CCCcEEEE
Q psy6838          81 ------------------------------------------------------------------------DNGRLEYS   88 (442)
Q Consensus        81 ------------------------------------------------------------------------~~~~i~y~   88 (442)
                                                                                              .++.+.|.
T Consensus      2326 ~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~f~~~gt~~~~ 2405 (4289)
T KOG1219|consen 2326 LSENGIITLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDADFGAYGTSIYY 2405 (4289)
T ss_pred             eccCceEEehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhccceeEEEEecCccccccccCCceeee
Confidence                                                                                    55667777


Q ss_pred             EEeCCCCCcEEEeCCccEEEEcccCCcccCcEEE--EEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeE
Q psy6838          89 IVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN--LVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETT  165 (442)
Q Consensus        89 i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~--l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~  165 (442)
                      +....++..|.|++. |.|.+.+.||||....+.  +.+.|.|++|     +.+-++++|.+.|+|||+|+|... |.+.
T Consensus      2406 si~s~~sd~~~in~~-GqI~t~~kld~e~s~~~vi~i~v~a~Da~g-----r~af~tvti~ltDiNDnpPqF~a~~Y~~n 2479 (4289)
T KOG1219|consen 2406 SINSRASDHFEINKS-GQIKTLSKLDREYSEELVIIIAVMAFDAGG-----RVAFCTVTIILTDINDNPPQFDAQLYRVN 2479 (4289)
T ss_pred             eechhccCceeECCC-ccEEeeehhhhccCceEEEEEEEEEecCCC-----eEEEEEEEEEEEecCCCCccccceeEEEE
Confidence            777778899999977 999999999999866554  5566679887     588999999999999999999987 9999


Q ss_pred             eeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC--CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCce
Q psy6838         166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE--ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSS  243 (442)
Q Consensus       166 v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~--~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~  243 (442)
                      |.|++..|..|+.+.|+|.|.+.|+.++|.+.++.  ...|.|++ +|.|++++.|++++...|+|.|+|.|.|.|.+.+
T Consensus      2480 I~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~-sG~Itv~~sL~~~en~tl~l~vkA~D~g~P~~~s 2558 (4289)
T KOG1219|consen 2480 ITENASKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINE-SGVITVKRSLDGLENSTLHLFVKAIDDGKPRRRS 2558 (4289)
T ss_pred             eecccCCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecC-CceEEeehhhhcccCcEEEEEEEeccCCCCCccc
Confidence            99999999999999999999999999999999885  45688988 9999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEE-----------------------------------------
Q psy6838         244 RTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ-----------------------------------------  282 (442)
Q Consensus       244 ~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~-----------------------------------------  282 (442)
                      .++|.|+|.+...+.|.|..+.|.++++|+.+.|..|.+                                         
T Consensus      2559 ~ttV~v~vl~e~v~lPrFSep~y~fsvpEDv~vG~~Ig~v~a~~a~~~~i~~~v~~gt~Esn~d~~Fsvdr~TG~i~v~k 2638 (4289)
T KOG1219|consen 2559 NTTVIVTVLPEDVNLPRFSEPIYTFSVPEDVPVGEEIGQVSASDADEHVIYSLVLGGTPESNPDLPFSVDRNTGMIKVNK 2638 (4289)
T ss_pred             ceEEEEEecCcccCcccccCceEEEeccccCCCCCeeeEEeecccCCceEEEEEeCCCCCCCCCCceEEcCCCceEEecc
Confidence            999999999999999999999999999999999998866                                         


Q ss_pred             -------------------------------EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEE
Q psy6838         283 -------------------------------VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYS  331 (442)
Q Consensus       283 -------------------------------v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~  331 (442)
                                                     |.++||++|+|....|.+.+.||+|.|+.|++++|.|.|.+.+++++|+
T Consensus      2639 sLD~E~kk~yqi~v~a~~~~~vva~tsv~vqVkDvNDNaPvFe~d~y~f~i~En~pvGtsV~qf~AsD~Ds~~nGqirys 2718 (4289)
T KOG1219|consen 2639 SLDHEKKKSYQIKVKATCGQWVVAETSVFVQVKDVNDNAPVFEKDPYLFIIEENSPVGTSVIQFHASDMDSGNNGQIRYS 2718 (4289)
T ss_pred             ccchhhhceEEEEEEeecCCceEEEEEEEEEeecccCCCccccCCceeEEEeccCCCCceEEEEEeeccCCCCCceEEEE
Confidence                                           6688999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCeeEEecCC
Q psy6838         332 VVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENV  411 (442)
Q Consensus       332 l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~  411 (442)
                      |...  ..+|.|+++||.|++...||.|++..|.|.|+|+|.|.+  ++.++|.|+|.|+||+||.|....|..++.|+.
T Consensus      2719 l~~~--v~yF~In~etGwlTt~~eld~ek~d~y~lkv~AtDhG~~--ssq~~v~v~vtDvndspprf~~eiy~gtvv~d~ 2794 (4289)
T KOG1219|consen 2719 LTSP--VPYFAINPETGWLTTLFELDLEKQDLYSLKVVATDHGVP--SSQATVLVHVTDVNDSPPRFQREIYEGTVVEDV 2794 (4289)
T ss_pred             EcCC--cceEEEcCCCCeeeehhhhccccCCceEEEEEEecCCcc--cccceEEEEEEecCCCcchhhhHhhccceeccC
Confidence            9854  339999999999999999999999999999999999995  788999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEeCCCC---eeEEEEeeCCC-CCC
Q psy6838         412 TLGTGLASVHAVDLDSG---KLPFLLPIGDF-DLL  442 (442)
Q Consensus       412 ~~g~~v~~v~a~D~D~~---~~~y~i~~~~~-~~f  442 (442)
                      +.|..++.++..|.|..   ..+|-|..|++ |-|
T Consensus      2795 p~~~~ia~~si~d~D~s~~nq~t~fI~~gd~~gqF 2829 (4289)
T KOG1219|consen 2795 PGGKIIAGLSIFDADVSEVNQVTGFITLGDPLGQF 2829 (4289)
T ss_pred             CCCceeeeeEeccccccccceeEEEEeCCCccceE
Confidence            99999999999999999   58899999876 543

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=100.00  E-value=9.1e-31  Score=233.73  Aligned_cols=197  Identities=43%  Similarity=0.665  Sum_probs=178.5

Q ss_pred             CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCC-CCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCC
Q psy6838         162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS  240 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~-~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~  240 (442)
                      +.+.+.|+++.|+.++++.|.|+|.+.++.++|+|.++.. .+|.|++.+|.|++.+.||||....|.|.|+|+|.|.+.
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~   81 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPP   81 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCc
Confidence            5688999999999999999999999888889999999874 799999999999999999999999999999999988877


Q ss_pred             CceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeC
Q psy6838         241 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA  320 (442)
Q Consensus       241 ~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~  320 (442)
                      +++...++|.|.|+||++|.|....|                                .+.|.|+.+.|+.++++.|.|+
T Consensus        82 ~~~~~~v~I~V~d~Nd~~P~~~~~~~--------------------------------~~~v~e~~~~~~~i~~~~a~D~  129 (199)
T cd00031          82 LSSTATVTVTVLDVNDNPPVFEQSSY--------------------------------EASVPENAPPGTVVGTVTATDA  129 (199)
T ss_pred             ceeEEEEEEEEccCCCCCCcccccce--------------------------------EEEEeCCCCCCCEEEEEEEEcC
Confidence            77999999999999999999876544                                4556677777888888888999


Q ss_pred             CCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838         321 DEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       321 D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  390 (442)
                      |.+.++.++|+|.++....+|.|++.+|.|++.+.||||....|.|.|.|+|.+.+.+++++.++|.|.|
T Consensus       130 D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         130 DSGENAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             CCCCCccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            9988899999999765558999999999999999999999999999999999987778999999999875

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=100.00  E-value=1.5e-30  Score=232.33  Aligned_cols=196  Identities=43%  Similarity=0.726  Sum_probs=177.4

Q ss_pred             EEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCC
Q psy6838          16 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE   95 (442)
Q Consensus        16 ~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~   95 (442)
                      |.+.|+|++++|+.|+++.|.|+|.+.++.++|+|.++                                       ...
T Consensus         2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~---------------------------------------~~~   42 (199)
T cd00031           2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGG---------------------------------------NED   42 (199)
T ss_pred             eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCC---------------------------------------CCc
Confidence            68899999999999999999999987777788877663                                       223


Q ss_pred             CcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeec-cCCeeEeeCCCCCCc
Q psy6838          96 EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNT  174 (442)
Q Consensus        96 ~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~-~~~~~~v~E~~~~g~  174 (442)
                      .+|.|++.+|.|++.+.||||....|.|.|+|+|.+.+.   ++++..+.|.|.|+||++|.|. ..+.+.+.|+.++|+
T Consensus        43 ~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~~~---~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~  119 (199)
T cd00031          43 GLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGGPP---LSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGT  119 (199)
T ss_pred             ccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCcCc---ceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCC
Confidence            578888788999999999999999999999999987653   4689999999999999999999 559999999999999


Q ss_pred             EEEEEEEEeCCCCCCceEEEEEecCCC-CCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEe
Q psy6838         175 VVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       175 ~v~~v~a~D~D~~~~~~~~y~i~~~~~-~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  253 (442)
                      .++++.|+|+|.+.++.++|+|.++.. .+|.|++.+|.|++.+.||||....|.|.|.|+|.+.+.++....++|.|.|
T Consensus       120 ~i~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         120 VVGTVTATDADSGENAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             EEEEEEEEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEEC
Confidence            999999999999888889999999874 7999999999999999999999999999999999988888899999998875

>KOG1834|consensus

Probab=99.78  E-value=1.5e-17  Score=160.29  Aligned_cols=210  Identities=26%  Similarity=0.375  Sum_probs=168.9

Q ss_pred             EEEEEeccCCCCeeccCCeeEeeCCCCCCcEEEEEEEEeCCCCC---CceEEEEEecCCCCCeE---ecCcce--EEEEc
Q psy6838         145 SIVIRDVNDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQ---NSYVEYSIINSEATPFS---LGPVDG--LLRVA  216 (442)
Q Consensus       145 ~I~V~dvNd~~P~f~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~---~~~~~y~i~~~~~~~F~---id~~tG--~i~~~  216 (442)
                      .....-+|-|.|+....|...|.||...-.....+.|.|.|.+-   ...+-|.|.+.+ -+|.   +|..||  .|+.+
T Consensus        20 ~~~aarankhkpwie~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~-vPFdavVvdK~TGegvlRaK   98 (952)
T KOG1834|consen   20 HHHAARANKHKPWIEEEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQP-VPFDAVVVDKYTGEGVLRAK   98 (952)
T ss_pred             ccccccccccCcccccceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCC-CCceEEEEeccCCceEEeec
Confidence            34566788899999999999999998655556678899999841   233578888765 4554   466665  68888


Q ss_pred             ccCCcccccEEEEEEEEEeCCCCC------CceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCC
Q psy6838         217 QKLDREIKSNYTLEIKAKDRGEPS------KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNS  290 (442)
Q Consensus       217 ~~lD~e~~~~~~l~V~a~D~~~~~------~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~  290 (442)
                      .+||.|.++.|+|+|+|.|.|..+      .+-.++|.|+|.|+|+.+|.|..+.|.+.|.|...               
T Consensus        99 ~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~---------------  163 (952)
T KOG1834|consen   99 EPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKV---------------  163 (952)
T ss_pred             CcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEeccee---------------
Confidence            999999999999999999987543      56678999999999999999999988888776522               


Q ss_pred             CccCCcceeEEEecCCCCCcEEEEEEEEeCCCC--CCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEE
Q psy6838         291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG--VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVV  368 (442)
Q Consensus       291 p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~--~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V  368 (442)
                                        ...|+++.|.|.|.+  ....+.|.|..  ..-+|.||.. |.|+.+.+|+|...+.|.|+|
T Consensus       164 ------------------yd~il~veAiD~DCspq~sqIC~YEI~t--~d~PFaIdn~-G~irnTekLny~ke~~Y~ltV  222 (952)
T KOG1834|consen  164 ------------------YDSILRVEAIDKDCSPQYSQICEYEITT--PDVPFAIDND-GNIRNTEKLNYTKEHQYKLTV  222 (952)
T ss_pred             ------------------eeeeEEEEeecCCCCCcccceeEEEecC--CCCceEEcCC-CccccccccccccceeEEEEE
Confidence                              235677888999974  34567899984  6778999975 999999999999999999999


Q ss_pred             EEEECCCCCceEEEEEEEEEeeC
Q psy6838         369 QAQDTGKPMMSSTVTVYFNVVDL  391 (442)
Q Consensus       369 ~a~D~~~~~~~~~~~v~I~V~dv  391 (442)
                      +|.|+|......-+.|+|+|...
T Consensus       223 tAyDCg~kraa~d~lV~v~Vkp~  245 (952)
T KOG1834|consen  223 TAYDCGKKRAASDSLVTVHVKPT  245 (952)
T ss_pred             EEEecccccccCcceEEEEecCc
Confidence            99999985555557888888765

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.77  E-value=1.4e-17  Score=129.11  Aligned_cols=92  Identities=43%  Similarity=0.694  Sum_probs=88.1

Q ss_pred             eeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEEC-CCC
Q psy6838         298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT-GKP  376 (442)
Q Consensus       298 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~-~~~  376 (442)
                      |.+.|.|++++|+.++++.|.|+|.+.++.+.|+|..++..++|.|++.+|.|++.+.||||....|.|.|.|+|. +.|
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~   80 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSP   80 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSS
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCC
Confidence            6789999999999999999999999999999999998888899999999999999999999999999999999999 889


Q ss_pred             CceEEEEEEEEEe
Q psy6838         377 MMSSTVTVYFNVV  389 (442)
Q Consensus       377 ~~~~~~~v~I~V~  389 (442)
                      +++++++|+|+|+
T Consensus        81 ~~~~~~~V~I~V~   93 (93)
T PF00028_consen   81 PLSSTATVTINVL   93 (93)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEC
Confidence            9999999999985

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.72  E-value=1.2e-16  Score=123.82  Aligned_cols=91  Identities=38%  Similarity=0.626  Sum_probs=86.8

Q ss_pred             CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeC-CCC
Q psy6838         162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR-GEP  239 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~-~~~  239 (442)
                      |.+.|+|++++|+.++++.|.|+|.+.++.+.|+|..+. ..+|.|++.+|.|++.++||||....|.|.|.|+|. +.|
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~   80 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSP   80 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSS
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCEEEEEEEEEECCCCC
Confidence            578999999999999999999999999999999999998 789999999999999999999999999999999999 888


Q ss_pred             CCceeEEEEEEEE
Q psy6838         240 SKSSRTKFFIRLL  252 (442)
Q Consensus       240 ~~~~~~~v~I~V~  252 (442)
                      ++++++.|+|.|.
T Consensus        81 ~~~~~~~V~I~V~   93 (93)
T PF00028_consen   81 PLSSTATVTINVL   93 (93)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEC
Confidence            9999999999884

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.68  E-value=4.4e-16  Score=116.70  Aligned_cols=79  Identities=49%  Similarity=0.733  Sum_probs=73.9

Q ss_pred             EeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCC
Q psy6838         318 TDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP  396 (442)
Q Consensus       318 ~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P  396 (442)
                      +|+|.+.++.++|+|.++....+|.|++.+|.|++.++||||....|.|.|+|+|.+.|++++.++|+|+|.|+|||+|
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            3788888999999999776668999999999999999999999999999999999999999999999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.64  E-value=2.1e-14  Score=138.91  Aligned_cols=152  Identities=26%  Similarity=0.430  Sum_probs=126.5

Q ss_pred             EeCCc--cEEEEcccCCcccCcEEEEEEEEEeCCCCCCC---CceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838         100 INPSN--GTLSNLKHLDRETKSSYNLVVMATDMAKPPQK---RLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus       100 i~~~~--g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~---~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      +|..+  |.|+.+.+||-|.+..|+|+|+|.|++..|..   ..|..++|.|.|.|+|+++|+|..+ |.+.|.|+.. -
T Consensus        86 vdK~TGegvlRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~-y  164 (952)
T KOG1834|consen   86 VDKYTGEGVLRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKV-Y  164 (952)
T ss_pred             EeccCCceEEeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEeccee-e
Confidence            45555  57889999999999999999999999875521   2467889999999999999999988 8888888864 5


Q ss_pred             cEEEEEEEEeCCCC-CC-ceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEE
Q psy6838         174 TVVAALKAIDRDEG-QN-SYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRL  251 (442)
Q Consensus       174 ~~v~~v~a~D~D~~-~~-~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V  251 (442)
                      ..|+++.|.|.|-+ ++ ..+.|.|...+ -+|.||. .|.|+.+.+|+|.....|.|+|.|.|.|.........|+|.|
T Consensus       165 d~il~veAiD~DCspq~sqIC~YEI~t~d-~PFaIdn-~G~irnTekLny~ke~~Y~ltVtAyDCg~kraa~d~lV~v~V  242 (952)
T KOG1834|consen  165 DSILRVEAIDKDCSPQYSQICEYEITTPD-VPFAIDN-DGNIRNTEKLNYTKEHQYKLTVTAYDCGKKRAASDSLVTVHV  242 (952)
T ss_pred             eeeEEEEeecCCCCCcccceeEEEecCCC-CceEEcC-CCccccccccccccceeEEEEEEEEecccccccCcceEEEEe
Confidence            57899999999985 33 34689999865 7899997 999999999999999999999999999875555556777777


Q ss_pred             EeC
Q psy6838         252 LDE  254 (442)
Q Consensus       252 ~d~  254 (442)
                      ...
T Consensus       243 kp~  245 (952)
T KOG1834|consen  243 KPT  245 (952)
T ss_pred             cCc
Confidence            543

>smart00112 CA Cadherin repeats

Probab=99.64  E-value=2.2e-15  Score=112.86  Aligned_cols=78  Identities=40%  Similarity=0.645  Sum_probs=73.6

Q ss_pred             EeCCCCCCceEEEEEecCCC-CCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEeCCCCCC
Q psy6838         182 IDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP  259 (442)
Q Consensus       182 ~D~D~~~~~~~~y~i~~~~~-~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P  259 (442)
                      +|+|.+.++.++|+|.++.. .+|.|++.+|.|++.++||||....|.|.|+|+|.+.|++++.+.|+|.|.|+|||+|
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCCCC
Confidence            47899889999999998875 8999999999999999999999999999999999999889999999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.54  E-value=0.0012  Score=49.94  Aligned_cols=78  Identities=23%  Similarity=0.358  Sum_probs=42.4

Q ss_pred             CCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEE
Q psy6838         290 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQ  369 (442)
Q Consensus       290 ~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~  369 (442)
                      .|-|.+..|.+.|..+...|..||+|.-.|...  +..+.|.-.    ...|.|.++ |.|++++++.... ..-.|+|.
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ss----DpdF~V~~D-GsVy~~r~v~l~~-~~~~F~V~   74 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESS----DPDFRVLED-GSVYAKRPVQLSS-EQRSFTVH   74 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE-------SEEEEETT-TEEEEES--S-SS-S-EEEEEE
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecC----CCCEEEcCC-CeEEEeeeEecCC-CceEEEEE
Confidence            367888888899999999999999999999853  455777654    238999987 9999999987654 34689999


Q ss_pred             EEECCC
Q psy6838         370 AQDTGK  375 (442)
Q Consensus       370 a~D~~~  375 (442)
                      |.|..+
T Consensus        75 a~D~~~   80 (90)
T PF08758_consen   75 AWDSQT   80 (90)
T ss_dssp             EEETTT
T ss_pred             EECCCC
Confidence            999876

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.45  E-value=8.7e-05  Score=55.25  Aligned_cols=63  Identities=21%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             eEEEEEecCCCCCcEEEEEEeeeCCCCCC--cEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc
Q psy6838          15 VYAFDVLEDLPRGSRVGQVFTTDADEGVN--GVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED   78 (442)
Q Consensus        15 ~~~~~v~E~~~~g~~v~~~~a~D~D~~~~--~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~   78 (442)
                      ....+|+|..+.|+.||.+ |.|.-....  ....+++.+.....||.+++++|.|++..++|+|.
T Consensus         2 qi~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    2 QIRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             CeEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHH
Confidence            3578999999999999999 555432110  01234444433444555555555555544455444

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.41  E-value=9.9e-05  Score=54.96  Aligned_cols=62  Identities=21%  Similarity=0.478  Sum_probs=40.3

Q ss_pred             eeEEEecCCCCCcEEEEEEEEeCCCCCC--eEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCcc
Q psy6838         298 YAFDVLEDLPRGSRVGQVFTTDADEGVN--GVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED  360 (442)
Q Consensus       298 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~  360 (442)
                      ..++|.|..++|+.||.+ |.|--....  ....|+|.......+|.++..+|.|+++..+|||.
T Consensus         3 i~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~   66 (84)
T PF08266_consen    3 IRYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREE   66 (84)
T ss_dssp             EEEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCC
T ss_pred             eEEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHH
Confidence            457899999999999998 344432111  12367877777788999999999999999999996

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.11  E-value=0.0084  Score=45.30  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=41.2

Q ss_pred             CCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEE
Q psy6838           8 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEY   87 (442)
Q Consensus         8 ~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y   87 (442)
                      -|-|....|.+.|+.+...|..|++|.-.|...  +..+.|+..+                                   
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ssD-----------------------------------   45 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESSD-----------------------------------   45 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE--------------------------------------
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecCC-----------------------------------
Confidence            588999999999999999999999999999853  4456665422                                   


Q ss_pred             EEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCC
Q psy6838          88 SIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP  133 (442)
Q Consensus        88 ~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~  133 (442)
                              ..|.|. ..|.|.+++++..... .-.|.|.|.|..+.
T Consensus        46 --------pdF~V~-~DGsVy~~r~v~l~~~-~~~F~V~a~D~~~~   81 (90)
T PF08758_consen   46 --------PDFRVL-EDGSVYAKRPVQLSSE-QRSFTVHAWDSQTQ   81 (90)
T ss_dssp             --------SEEEEE-TTTEEEEES--S-SSS--EEEEEEEEETTTT
T ss_pred             --------CCEEEc-CCCeEEEeeeEecCCC-ceEEEEEEECCCCC
Confidence                    367776 6889999988876433 35799999998863

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=97.02  E-value=0.014  Score=44.99  Aligned_cols=69  Identities=30%  Similarity=0.342  Sum_probs=53.8

Q ss_pred             EeCCCCCCeEEEEEEEeC---CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCC
Q psy6838         318 TDADEGVNGVVTYSVVSD---WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLND  393 (442)
Q Consensus       318 ~D~D~~~~~~i~y~l~~~---~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd  393 (442)
                      .|+|   +..++|++...   ....|..+++.++.++-. +. .+..+.|.+.|+|+|+.+  .++...++|.|.+.|+
T Consensus        25 ~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~-~~~~g~~~i~v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       25 TDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PT-NSDVGSLSLKVTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             ECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CC-CCCCcEEEEEEEEEECCC--CEEEEEEEEEEeCCCC
Confidence            6776   46799988743   235799999998888763 33 334577999999999876  6788999999999987

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.98  E-value=0.0084  Score=45.88  Aligned_cols=87  Identities=24%  Similarity=0.303  Sum_probs=58.2

Q ss_pred             EEEEEEeCCCCCCeEEEEEEEe-CCCCCCeEEeCCccEEEEc--------ccCCCccCcEEEEEEEEEECCCCCceEEEE
Q psy6838         313 GQVFTTDADEGVNGVVTYSVVS-DWANDVFSINPQSGIFTLT--------AKLDYEDVHHYIFVVQAQDTGKPMMSSTVT  383 (442)
Q Consensus       313 ~~v~a~D~D~~~~~~i~y~l~~-~~~~~~f~id~~tG~l~~~--------~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~  383 (442)
                      |++.++|+|.+.  ..++++.. ...-+.|.|++ .|..+..        +.|...+...-+|+|++.|+      .+++
T Consensus         2 G~Lt~sD~D~gd--~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DG------tt~~   72 (99)
T TIGR01965         2 GQLTISDADAGQ--AHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSADG------TSQT   72 (99)
T ss_pred             CceEEeCCCCCC--ceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCC------CeEE
Confidence            567789999754  45666642 22346788887 4755443        12332234467899999995      2899


Q ss_pred             EEEEEeeCCCCCCccCCCCCeeEEecC
Q psy6838         384 VYFNVVDLNDNPPLFDPMPPNIPVYEN  410 (442)
Q Consensus       384 v~I~V~dvNd~~P~f~~~~~~~~v~E~  410 (442)
                      |+|+|...|| +|.... .-...+.|+
T Consensus        73 vtItI~GtND-apvi~~-~~~g~v~ED   97 (99)
T TIGR01965        73 VTITITGAND-AAVIGG-ADTGSVTED   97 (99)
T ss_pred             EEEEEEccCC-CCEEec-ccceeEecC
Confidence            9999999999 887653 345677776

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=96.82  E-value=0.015  Score=44.59  Aligned_cols=50  Identities=24%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             ccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccCCeeEeeCCC
Q psy6838         111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENS  170 (442)
Q Consensus       111 ~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~v~E~~  170 (442)
                      +.|...+.-.-+|++.+.|+.         +.+|.|+|...|| +|++.......+.|+.
T Consensus        49 q~L~~Ge~~tdsFtvtv~DGt---------t~~vtItI~GtND-apvi~~~~~g~v~ED~   98 (99)
T TIGR01965        49 QALKAGETLTDTFTVTSADGT---------SQTVTITITGAND-AAVIGGADTGSVTEDS   98 (99)
T ss_pred             HhhcCCCEEEEEEEEEEeCCC---------eEEEEEEEEccCC-CCEEecccceeEecCC
Confidence            344444445567888888842         5789999999999 8888777777777764

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=96.73  E-value=0.035  Score=42.79  Aligned_cols=31  Identities=32%  Similarity=0.389  Sum_probs=26.5

Q ss_pred             CcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccC
Q psy6838         118 KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVND  153 (442)
Q Consensus       118 ~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd  153 (442)
                      ...|.++|.|+|..+     .+....++|.|.+.|+
T Consensus        66 ~g~~~i~v~a~D~~g-----~~~~~~f~i~V~~~~~   96 (97)
T smart00736       66 VGSLSLKVTATDSSG-----ASASDTFTITVVNTND   96 (97)
T ss_pred             CcEEEEEEEEEECCC-----CEEEEEEEEEEeCCCC
Confidence            356999999999886     4788899999999886

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=95.95  E-value=0.86  Score=38.54  Aligned_cols=126  Identities=21%  Similarity=0.345  Sum_probs=72.5

Q ss_pred             CcEEEEEE-EEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccCCeeEeeCCCCC-CcEEEEEEEEeCCCCCCceEEEE
Q psy6838         118 KSSYNLVV-MATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPL-NTVVAALKAIDRDEGQNSYVEYS  195 (442)
Q Consensus       118 ~~~~~l~v-~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~v~E~~~~-g~~v~~v~a~D~D~~~~~~~~y~  195 (442)
                      ...|++++ .|.|..+.     ..+..+..++. +...+|.+.-.....+..+... +..-..+.++|.-.+. ..-+.+
T Consensus        14 dG~Y~l~~~~a~D~agN-----~~~~~~~~~~~-iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~   86 (158)
T PF13750_consen   14 DGSYTLTVVTATDAAGN-----TSTSTVSETFT-IDNTPPTISISDGASVANGSTVYGLVNISINVTDNSDDS-KITSVS   86 (158)
T ss_pred             CccEEEEEEEEEecCCC-----EEEEEEeeEEE-EcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEE
Confidence            46899999 79999874     44444443333 3456898866322233333332 3344557777766544 335677


Q ss_pred             EecCC-CCCe--EecC-cceEEEEc--ccC-CcccccEEEEEEEEEeCCCCCCceeEEEEEEEE
Q psy6838         196 IINSE-ATPF--SLGP-VDGLLRVA--QKL-DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLL  252 (442)
Q Consensus       196 i~~~~-~~~F--~id~-~tG~i~~~--~~l-D~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~  252 (442)
                      |.++. ...-  .... ..|...+.  +.+ ..|....|+|+|.|+|..  +...+..+.....
T Consensus        87 l~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~a--GN~~~~si~F~y~  148 (158)
T PF13750_consen   87 LTGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKA--GNQSTKSISFSYM  148 (158)
T ss_pred             EECCcccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecC--CCEEEEEEEEEEe
Confidence            77665 2221  1111 13333332  111 236788999999999987  4566666666655

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=95.64  E-value=1.2  Score=37.75  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             EEEEEeCCCCCCeEEEEEEEeCCCCCCeEE--eCC-ccEEEEc--cc-CCCccCcEEEEEEEEEECCCCCceEEEEEEEE
Q psy6838         314 QVFTTDADEGVNGVVTYSVVSDWANDVFSI--NPQ-SGIFTLT--AK-LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFN  387 (442)
Q Consensus       314 ~v~a~D~D~~~~~~i~y~l~~~~~~~~f~i--d~~-tG~l~~~--~~-ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~  387 (442)
                      .+.++|.-... .....+|.+|.......+  ... .|...+.  +. ...|....|+|+|.|.|..+  ...+..+.+.
T Consensus        70 ~i~~tD~~~~~-~i~sv~l~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG--N~~~~si~F~  146 (158)
T PF13750_consen   70 SINVTDNSDDS-KITSVSLTGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG--NQSTKSISFS  146 (158)
T ss_pred             EEEEEeCCCCc-eEEEEEEECCcccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEEecCC--CEEEEEEEEE
Confidence            34445554332 344566665443333222  111 2333332  11 12366789999999999877  6778888887


Q ss_pred             EeeCC
Q psy6838         388 VVDLN  392 (442)
Q Consensus       388 V~dvN  392 (442)
                      ....|
T Consensus       147 y~P~~  151 (158)
T PF13750_consen  147 YMPPN  151 (158)
T ss_pred             EeCCe
Confidence            76543

>TIGR00845 caca sodium/calcium exchanger 1

Probab=92.98  E-value=16  Score=39.73  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             ccCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC
Q psy6838         151 VNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE  200 (442)
Q Consensus       151 vNd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~  200 (442)
                      .||..+.+... ....+.|+.  |+.-..|.-...|.+....+.|+..++.
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGT  443 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGT  443 (928)
T ss_pred             ccCCcceEEecCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCc
Confidence            34444455433 677899986  6666666554445544566889888776

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=92.43  E-value=0.52  Score=31.08  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             CCCCCeEEeCCccEEEEcccCCCc-cCcEEEEEEEEEECC
Q psy6838         336 WANDVFSINPQSGIFTLTAKLDYE-DVHHYIFVVQAQDTG  374 (442)
Q Consensus       336 ~~~~~f~id~~tG~l~~~~~ld~e-~~~~~~l~V~a~D~~  374 (442)
                      ....+..||+.+|.|+-.  .+.. ....|.|+|+|+|..
T Consensus        11 ~LP~gLs~d~~tG~isGt--p~~~~~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   11 GLPSGLSLDPSTGTISGT--PTSSVQPGTYTFTVTATDGS   48 (49)
T ss_pred             CCCCcEEEeCCCCEEEee--cCCCccccEEEEEEEEEcCC
Confidence            456789999999999765  3333 336999999999975

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

>TIGR00845 caca sodium/calcium exchanger 1

Probab=90.75  E-value=8.1  Score=41.92  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             EEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEE-EEEEeCCCC-eeEEEEeeC
Q psy6838         382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLAS-VHAVDLDSG-KLPFLLPIG  437 (442)
Q Consensus       382 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~-v~a~D~D~~-~~~y~i~~~  437 (442)
                      .+.+|+|.| ||++|.|........|.|+  .|..-.+ ++..+.++. .+.|.-.+|
T Consensus       515 s~ATVTIlD-DD~aGIfsFe~~~~sV~Es--~G~vtvtV~RtsGa~G~VtV~Y~T~dG  569 (928)
T TIGR00845       515 NTATVTILD-DDHAGIFTFEEDVFHVSES--IGIMEVKVLRTSGARGTVIVPYRTVEG  569 (928)
T ss_pred             ceEEEEEec-CcccCcccccCceEEEEcC--CCEEEEEEEEcCCCCeeEEEEEEeecC
Confidence            456677777 6789988766666788898  4554333 334444444 777877665

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=88.56  E-value=12  Score=30.65  Aligned_cols=57  Identities=23%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             EEEEcccCCccc---CcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccCCeeEeeCCC
Q psy6838         106 TLSNLKHLDRET---KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENS  170 (442)
Q Consensus       106 ~l~~~~~lD~E~---~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~v~E~~  170 (442)
                      .+.+..+||+..   .-...|.|.|+|..+.     .++..+.|+|.|  | .|.........|.|+.
T Consensus        69 tftL~~~lDH~~g~d~l~l~~~v~a~D~DGD-----~s~~~l~VtI~D--D-~P~~~~~~~~~V~E~~  128 (137)
T TIGR03660        69 EFTLEGPLDHAAGSDELTLNFPIIATDFDGD-----TSSITLPVTIVD--D-VPTITDVDALTVDEDD  128 (137)
T ss_pred             EEEEcccccCCCCCceEEEeeeEEEEeCCCC-----ccccEEEEEEEC--C-CCeeccccceEEeccc
Confidence            344567888743   4467888999998874     234578888877  5 6887666667888853

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

>TIGR00864 PCC polycystin cation channel protein

Probab=88.08  E-value=75  Score=39.05  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc-ccCCCcEEEEEEeCCCCCcEEEeCC
Q psy6838          25 PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED-VSDNGRLEYSIVSGDDEEIFTINPS  103 (442)
Q Consensus        25 ~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~-~~~~~~i~y~i~~~~~~~~F~i~~~  103 (442)
                      .+|+...+++|++.. |.+ ..+-.+.=..+-..|.+++..+.+.+...+.+.. ...+..+.|+..-++....+.-++.
T Consensus      1482 ~~GtYtVtLTvtN~~-Gss-t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~~npt 1559 (2740)
T TIGR00864      1482 SPGDFNIRLAAANEV-GKN-EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIFGGNT 1559 (2740)
T ss_pred             CCceEEEEEEEECCC-Cce-EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCccccCCCc
Confidence            357777777777664 222 1111221112334577777777665554454443 2245567777776654322221110


Q ss_pred             ccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEec
Q psy6838         104 NGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV  151 (442)
Q Consensus       104 ~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dv  151 (442)
                             ..--|.+...|++++.|++..|.      ...++.|.|.+.
T Consensus      1560 -------~~yTY~spGtYtVtLTvtN~~Gs------~~~T~~i~V~~~ 1594 (2740)
T TIGR00864      1560 -------IFYTFRSVGTFNIIVTAENDVGA------AQASIFLFVLQE 1594 (2740)
T ss_pred             -------eEEeecCCceEEEEEEEecCCCc------cceeEEEEEeec
Confidence                   01135677899999999998873      345556666643

Note: this model has been restricted to the amino half because for technical reasons.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.93  E-value=6.1  Score=27.48  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=36.4

Q ss_pred             CCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEE
Q psy6838         188 QNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRL  251 (442)
Q Consensus       188 ~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V  251 (442)
                      .+-...|+|.+-+..|..+...+-.+... .|   ..+.|+|.|+|.|..+.......++.|+|
T Consensus         6 ~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~-~L---~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I   65 (66)
T PF07495_consen    6 ENIRYRYRLEGFDDEWITLGSYSNSISYT-NL---PPGKYTLEVRAKDNNGKWSSDEKSLTITI   65 (66)
T ss_dssp             TTEEEEEEEETTESSEEEESSTS-EEEEE-S-----SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred             CceEEEEEEECCCCeEEECCCCcEEEEEE-eC---CCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence            34457788888777777766533244332 22   46899999999997754333336666665

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=87.14  E-value=8  Score=26.85  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             CeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838         325 NGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV  389 (442)
Q Consensus       325 ~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~  389 (442)
                      +-...|+|. |-...|..+...+-.+..+ .|   ..+.|+|.|+|.|..+.......++.|+|.
T Consensus         7 ~~~Y~Y~l~-g~d~~W~~~~~~~~~~~~~-~L---~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~   66 (66)
T PF07495_consen    7 NIRYRYRLE-GFDDEWITLGSYSNSISYT-NL---PPGKYTLEVRAKDNNGKWSSDEKSLTITIL   66 (66)
T ss_dssp             TEEEEEEEE-TTESSEEEESSTS-EEEEE-S-----SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred             ceEEEEEEE-CCCCeEEECCCCcEEEEEE-eC---CCEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence            445677777 4445666665543244433 22   568999999999977644333367776663

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	442
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		4e-23
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		1e-13
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		6e-23
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		9e-14
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		3e-20
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		2e-16
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		1e-18
1q55_A	880	W-Shaped Trans Interactions Of Cadherins Model Base		1e-14
1l3w_A	546	C-Cadherin Ectodomain Length = 546		1e-18
1l3w_A	546	C-Cadherin Ectodomain Length = 546		9e-15
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		4e-16
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-14
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		1e-10
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-05
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		1e-13
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		9e-13
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		2e-06
2yst_A	119	Solution Structure Of The Third Cadherin Domain Fro		1e-12
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		1e-12
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		2e-12
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		3e-06
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-12
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		1e-05
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		2e-12
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		2e-06
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-12
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-06
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		3e-12
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		1e-05
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		1e-11
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		1e-05
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		2e-11
3ubf_A	316	Crystal Structure Of Drosophila N-Cadherin Ec1-3, I		3e-11
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		4e-11
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		4e-09
3q2l_A	213	Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213		5e-09
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		5e-09
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		6e-09
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		6e-09
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		6e-09
1q1p_A	212	E-Cadherin Activation Length = 212		6e-09
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		7e-09
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		9e-09
3q2n_A	213	Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213		2e-08
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		4e-08
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		2e-07
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		4e-06
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		3e-07
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		5e-07
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		2e-05
4apx_B	242	Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Pr		7e-06
1suh_A	146	Amino-Terminal Domain Of Epithelial Cadherin In The		1e-04
1nch_A	110	Structural Basis Of Cell-Cell Adhesion By Cadherins		4e-04
1nch_A	110	Structural Basis Of Cell-Cell Adhesion By Cadherins		7e-04

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 184/417 (44%), Gaps = 88/417 (21%)
Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D NDN P F++ V+   V E    G+ V +V  TDAD+ VN   TY            
Sbjct: 98  VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN---TY------------ 142
Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
                                N  + Y+IVS D E     +FT+N   G +S L   LDR
Sbjct: 143 ---------------------NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNT 174
           E+  +Y LVV A D+     + LS+T +  I ++D+NDNAP F  +  +  +PEN  +N 
Sbjct: 182 ESYPTYTLVVQAADLQG---EGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE-VNA 237
Query: 175 VVAALKAIDRDEGQNSYVE--YSIINSEATPFSL--GPV--DGLLRVAQKLDREIKSNYT 228
            +A LK  D D       +  Y+++N     F +   P   DG+L+ A+ LD E K  Y 
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYI 297
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L ++ ++  EP + S                          VP      ATV       +
Sbjct: 298 LHVRVENE-EPFEGSL-------------------------VPST----ATVTVDVVDVN 327
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
            +P+F       +V ED   G  +      + D  ++  +TY +  D AN    INP++G
Sbjct: 328 EAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLEINPETG 386
Query: 349 IFTLTAKLDYEDVHH-----YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400
                A++D ED  H     Y+ ++ A D G P+ + T T+   ++D+NDN P+ +P
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEP 443

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 98/229 (42%), Gaps = 41/229 (17%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLP 431
                V D+NDN P+F+P      V EN  +   +A++   D D+   P
Sbjct: 206 KAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTP 253

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 136/300 (45%), Gaps = 50/300 (16%)
Query: 84  RLEYSIVSGDDE-EIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTT 142
           +++Y I+SGD    IF IN   G +  +K LDRE K+ Y L   A D      K L   +
Sbjct: 34  KIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET--NKPLEPPS 90
Query: 143 QVSIVIRDVNDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIIN 198
           +  I ++D+NDNAPEF+      T+PE S L T V  + A D D+   G ++ + YSI+ 
Sbjct: 91  EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL- 149
Query: 199 SEATP-FSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSK--SSRTKFFIRLLDE 254
            E  P FS+ P   +++ A   +DRE K  Y + I+AKD G  S   S  T   + L D 
Sbjct: 150 -EGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208
Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314
           NDN P F    Y  SVPE++ +                                G+ +G+
Sbjct: 209 NDNPPKFAQSLYHFSVPEDVVL--------------------------------GTAIGR 236
Query: 315 VFTTDADEGVNGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYEDVHHYIFVVQA 370
           V   D D G N   +Y ++      +F I      Q G+  L   LD+E    Y   V+A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 39/235 (16%)
Query: 201 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPI 260
            T F +  + G +   ++LDRE K+ YTL  +A                  +D   N P+
Sbjct: 45  GTIFQINDITGDIHAIKRLDREEKAEYTLTAQA------------------VDFETNKPL 86
Query: 261 FDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA 320
                +             +++V D NDN+P F    Y   V E    G+ V  V  TDA
Sbjct: 87  EPPSEF-------------IIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDA 133
Query: 321 DEGVNG---VVTYSVVSDWANDVFSINPQSGIF-TLTAKLDYEDVHHYIFVVQAQDTGKP 376
           D+ V G    + YS++       FSI P++ I  T    +D E    Y+ V+QA+D G  
Sbjct: 134 DDPVYGNSAKLVYSILE--GQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGH 191
Query: 377 M--MSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGK 429
              +S T T+   + D+NDNPP F     +  V E+V LGT +  V A D D G+
Sbjct: 192 SGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGE 246

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 169/372 (45%), Gaps = 55/372 (14%)
Query: 78  DVSDNGRLEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
           D   N  L YS+   G D+    IF INP +G LS  K LDRE  + ++L   A D+   
Sbjct: 27  DRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING- 85
Query: 134 PQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNS 190
              ++ +   + I + D+NDN PEF+      ++PE S   T V  + AID D+    N 
Sbjct: 86  --NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG 143
Query: 191 YVEYSIIN-SEATP----FSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD-RGEPSK-- 241
            + Y I++ + +TP    F++    G ++ VA  LDRE    YTL I+A D  G P+   
Sbjct: 144 MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGL 203
Query: 242 SSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFD 301
           S+     I + D NDN P F + ++   VPEN  V   V  ++ T+ + P       A+ 
Sbjct: 204 SNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYR 262
Query: 302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV 361
           +    P G                    +++++D        N   G+ T+   +D+E  
Sbjct: 263 ISGGDPTGR-------------------FAILTD-------PNSNDGLVTVVKPIDFETN 296
Query: 362 HHYIFVVQAQDTGKPMM-------SSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLG 414
             ++  V A++   P+         ST TV   V+D+N+N P F P P  I   E +  G
Sbjct: 297 RMFVLTVAAENQ-VPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAG 354
Query: 415 TGLASVHAVDLD 426
           T L ++ A D D
Sbjct: 355 TMLTTLTAQDPD 366

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 44/249 (17%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
           +PENS        L  I  D  +N  + YS+    A       F + P+ G L V + LD
Sbjct: 9   LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
           RE+ + + L   A D       +     I ++D NDN P F  + ++ SVPE    G  V
Sbjct: 68  RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
           + V+  + + P                                +NG++ Y ++S   +  
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRILSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVDLN 392
             ++F+IN ++G I T+ A LD E V  Y  ++QA D  G P   +S+T T    V D+N
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVN 217
Query: 393 DNPPLFDPM 401
           DNPP F  M
Sbjct: 218 DNPPEFTAM 226

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 187/471 (39%), Gaps = 109/471 (23%)
Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P F++ V+   V E +  G++V  V  TD D+ ++ +               
Sbjct: 253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSL--------------- 297
Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDR 115
                                NG L YSI+  D EE    +FTIN   G +S +   LDR
Sbjct: 298 ---------------------NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNT 174
           E    Y L V ATD+       LS   +  I I D NDNAP F     T  +PEN  +  
Sbjct: 337 EKFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGF 392
Query: 175 VVAALKAIDRD-EGQNSYVE-YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYT 228
            V  L   D D  G  ++   Y I  +E   F++        G+L  A+ LD E++  Y 
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L+I  ++  EP                             SVP   S     + V D N+
Sbjct: 453 LQITVEN-AEP----------------------------FSVPLPTSTATVTVTVEDVNE 483
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
            +P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +G
Sbjct: 484 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 541
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP---- 400
           I T    LD E  +     Y  ++   D G  + + T T+  +V+D+NDN P+  P    
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 401 -----------------MPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLL 434
                            +PPN   Y+ V+L  G       +LDS     LL
Sbjct: 602 MCDQNPEPQVLTISDADIPPNTYPYK-VSLSHGSDLTWKAELDSKGTSMLL 651

>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 153/352 (43%), Gaps = 49/352 (13%)
Query: 97  IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
           +F I    G +   + LDRE    Y L   A      P   +    +++I + D NDN P
Sbjct: 205 VFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRP 261
Query: 157 EFIT-ANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYSIINS---EATP--FSLG 207
           +F       ++ E     T V A+ A D D+     N  + YSI+     E  P  F++ 
Sbjct: 262 KFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321
Query: 208 PVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSY 266
              G++  +   LDRE    YTL ++A D      S   K  I++ D NDN PIFD K+Y
Sbjct: 322 RETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY 381
Query: 267 SASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG 326
           +A VPEN  +G  V ++S T+                 D+P       V+    +EG   
Sbjct: 382 TALVPEN-EIGFEVQRLSVTD----------------LDMPGTPAWQAVYKIRVNEG--- 421
Query: 327 VVTYSVVSDWANDVFSINPQS--GIFTLTAKLDYEDVHHYIF---VVQAQDTGKPMMSST 381
              +++ +D         P+S  GI T    LD+E    Y+    V  A+    P+ +ST
Sbjct: 422 -GFFNITTD---------PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 471
Query: 382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFL 433
            TV   V D+N+  P F P    + V E+++ G  + S+ A D D  ++  L
Sbjct: 472 ATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKL 522

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 187/471 (39%), Gaps = 109/471 (23%)
Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P F++ V+   V E +  G++V  V  TD D+ ++ +               
Sbjct: 104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSL--------------- 148
Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNL-KHLDR 115
                                NG L YSI+  D EE    +FTIN   G +S +   LDR
Sbjct: 149 ---------------------NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187
Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETT-IPENSPLNT 174
           E    Y L V ATD+       LS   +  I I D NDNAP F     T  +PEN  +  
Sbjct: 188 EKFPEYTLTVQATDLEG---AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE-IGF 243
Query: 175 VVAALKAIDRD-EGQNSYVE-YSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYT 228
            V  L   D D  G  ++   Y I  +E   F++        G+L  A+ LD E++  Y 
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303
Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L+I  ++  EP                             SVP   S     + V D N+
Sbjct: 304 LQITVEN-AEP----------------------------FSVPLPTSTATVTVTVEDVNE 334
Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
            +P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +G
Sbjct: 335 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 392
Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP---- 400
           I T    LD E  +     Y  ++   D G  + + T T+  +V+D+NDN P+  P    
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 452
Query: 401 -----------------MPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLL 434
                            +PPN   Y+ V+L  G       +LDS     LL
Sbjct: 453 MCDQNPEPQVLTISDADIPPNTYPYK-VSLSHGSDLTWKAELDSKGTSMLL 502

>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 161/369 (43%), Gaps = 53/369 (14%)
Query: 84  RLEYSIV-SGDD---EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 139
           ++ YSI   G D   + +F I    G +   + LDRE    Y L   A      P   + 
Sbjct: 39  KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VE 95
Query: 140 STTQVSIVIRDVNDNAPEFIT-ANETTIPENSPLNTVVAALKAIDRDE---GQNSYVEYS 195
              +++I + D NDN P+F       ++ E     T V A+ A D D+     N  + YS
Sbjct: 96  EPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYS 155
Query: 196 IINS---EATP--FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFI 249
           I+     E  P  F++    G++  +   LDRE    YTL ++A D      S   K  I
Sbjct: 156 ILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 215
Query: 250 RLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRG 309
           ++ D NDN PIFD K+Y+A VPEN  +G  V ++S T+                 D+P  
Sbjct: 216 QITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTD----------------LDMPGT 258
Query: 310 SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS--GIFTLTAKLDYEDVHHYIF- 366
                V+    +EG      +++ +D         P+S  GI T    LD+E    Y+  
Sbjct: 259 PAWQAVYKIRVNEG----GFFNITTD---------PESNQGILTTAKGLDFELRKQYVLQ 305
Query: 367 --VVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVD 424
             V  A+    P+ +ST TV   V D+N+  P F P    + V E+++ G  + S+ A D
Sbjct: 306 ITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQD 364
Query: 425 LDSGKLPFL 433
            D  ++  L
Sbjct: 365 PDKQQIQKL 373

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 57/367 (15%)
Query: 83  GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 131
           G+  + +    D+E F I   NP     +NG +   K  D E    + + +  V+ T+M 
Sbjct: 25  GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 84
Query: 132 KPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQ 188
                + +   +V I+++DVND  P FI      +  +  N+P NT V  L+A D D   
Sbjct: 85  HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 144
Query: 189 NSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 247
           N  + Y I+       F +    G++R       ++   Y L +KA+D+           
Sbjct: 145 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ----------- 191
Query: 248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLP 307
                     N   D + + ++  E +S+             +P F  P Y  ++ E+  
Sbjct: 192 ----------NGKVDDRRFQSTPEERLSIVG--------GKRAPQFYMPSYEAEIPENQK 233
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQSGIFTLTAKLDYEDV---HH 363
           + S    + +  A    +  + Y++ +       F+I P SGI  L  +LD+ED+   H 
Sbjct: 234 KDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHV 290
Query: 364 YIFVVQA-QDTGKPMMSSTVTVYFNVVDLNDNPPLFD-PMPPNIPVYENVTLGTGLASVH 421
           Y  +V A +D+G    S++V +   V D+NDN P F+ P      V E++ LGT +  V 
Sbjct: 291 YSLIVTATEDSGG--FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK 348
Query: 422 AVDLDSG 428
           A+D DSG
Sbjct: 349 AMDSDSG 355

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 16/214 (7%)
Query: 52  SDWA-NDVFSINPQSGIF-TLTAKLDYEDVSDNGRLEYSIVSGDDE-EIFTINPSNGTLS 108
           S W  N  F I   +G    L  +L  +  S +G ++Y I+SG+    IF I+  +G + 
Sbjct: 1   SGWVWNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKY-ILSGEGAGTIFVIDDKSGNIH 59
Query: 109 NLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIP 167
             K LDRE ++ Y L+  A D  +   + L   ++  + ++D+NDN PEF+       +P
Sbjct: 60  ATKTLDREERAQYTLMAQAVD--RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVP 117
Query: 168 ENSPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATP-FSLGPVDGLLRVA-QKLDRE 222
           E S + T V  + A D D+   G ++ + YSI+  E  P FS+    G++R A   +DRE
Sbjct: 118 ERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL--EGQPYFSVEAQTGIIRTALPNMDRE 175
Query: 223 IKSNYTLEIKAKDRGEP--SKSSRTKFFIRLLDE 254
            K  Y + I+AKD G      S  TK  I L D+
Sbjct: 176 AKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 49/219 (22%)
Query: 182 IDRDEGQNSYVEYSIINSEA--TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-- 237
           ID  +G   Y    I++ E   T F +    G +   + LDRE ++ YTL  +A DR   
Sbjct: 29  IDSGDGNIKY----ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 238 ---EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFS 294
              EP     ++F +++ D NDN P F  + Y A+VPE  +VG +V+QV+ ++ + P + 
Sbjct: 85  RPLEPP----SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTY- 139
Query: 295 EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF-TLT 353
                                       G +  + YS++       FS+  Q+GI  T  
Sbjct: 140 ----------------------------GNSAKLVYSILE--GQPYFSVEAQTGIIRTAL 169
Query: 354 AKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVD 390
             +D E    Y  V+QA+D G  M  +S T  V   + D
Sbjct: 170 PNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQA- 370
           VG++ + D D G +G + Y +  + A  +F I+ +SG    T  LD E+   Y  + QA 
Sbjct: 22  VGRLHS-DIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV 79
Query: 371 -QDTGKPMMSSTVTVYFNVVDLNDNPP--LFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
            +DT +P+   +  +   V D+NDNPP  L +    N+P   NV  GT +  V A D D
Sbjct: 80  DRDTNRPLEPPSEFI-VKVQDINDNPPEFLHEIYHANVPERSNV--GTSVIQVTASDAD 135

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 40/198 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 60  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 120 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 147
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 148 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 207
Query: 383 TVYFNVVDLNDNPPLFDP 400
                V D+NDN P+F+P
Sbjct: 208 KAVITVKDINDNAPVFNP 225

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 105/232 (45%), Gaps = 46/232 (19%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
           I E++P+ + V  L A D D   N  + + +   EA+ F ++ P  G++ + Q LDRE K
Sbjct: 19  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 225 SNYTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
           S +T+E    D +G  ++    K  I++ D NDN P F ++ YS  +PEN  VG      
Sbjct: 76  SEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------ 125
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI 343
                 +P+F                     V  TD D G  G V YS      +  F+I
Sbjct: 126 ------TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAI 157
Query: 344 NPQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPMMSSTVTVYFNVVDLND 393
           +   GI T+  +LDYE    Y   V A  QD  +P +S+   +   + D+ D
Sbjct: 158 DSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP-LSTLANLAIIITDMQD 208

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           ED P GS V Q+   D D   N  + + V  + A+  F++ P +G+  L   LD E    
Sbjct: 21  EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 77
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +       D    +   T  V   V D+NDN P F   P ++ + EN  +GT +  V+A 
Sbjct: 78  FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 134
Query: 424 DLDSG 428
           D D G
Sbjct: 135 DPDLG 139

>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTY--SVVSDWANDVFSIN 344
           NDNSP F + VY  D+ E+   G+ + Q+   D D GVNG + Y     ++    +  ++
Sbjct: 8   NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
             SG  ++  ++D E+V+   F V A+D G+P  +   TV  N+ D NDN P
Sbjct: 68  ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 54  W-ANDVFSINPQSGI-FTLTAKLDYEDVSDNGRLEYSIVSGDDE-EIFTINPSNGTLSNL 110
           W AN  F +   +G  +    KL  +    +G L+Y I+SGD   ++F IN + G +   
Sbjct: 2   WMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKY-ILSGDGAGDLFIINENTGDIQAT 60
Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET-TIPEN 169
           K LDRE K  Y L   A +  +   + +   ++  I I D+NDN P F     T T+PE 
Sbjct: 61  KRLDREEKPVYILRAQAVN--RRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEM 118
Query: 170 SPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKS 225
           + + T V  + A D D+   G ++ V YSI+  +   FS+    G+++ A   +DRE + 
Sbjct: 119 ADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY-FSVESETGIIKTALLNMDRENRE 177
Query: 226 NYTLEIKAKDRG 237
            Y + I+AKD G
Sbjct: 178 QYQVVIQAKDMG 189

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 37/185 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDR--GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
           G ++  ++LDRE K  Y L  +A +R  G P +   ++F I++ D NDN PIF    Y+A
Sbjct: 55  GDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPE-SEFIIKIHDINDNEPIFTKDVYTA 113
Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV 328
           +VPE   VG  V+QV+ T+ + P +                             G +  V
Sbjct: 114 TVPEMADVGTFVVQVTATDADDPTY-----------------------------GNSAKV 144
Query: 329 TYSVVSDWANDVFSINPQSGIF-TLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVY 385
            YS++       FS+  ++GI  T    +D E+   Y  V+QA+D G  M  +S T TV 
Sbjct: 145 VYSILQ--GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVN 202
Query: 386 FNVVD 390
             + D
Sbjct: 203 ITLTD 207

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQA- 370
           VG++ + D D G +G + Y +  D A D+F IN  +G    T +LD E+   YI   QA 
Sbjct: 21  VGKLHS-DQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAV 78
Query: 371 -QDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
            + TG+P+   +  +   + D+NDN P+F        V E   +GT +  V A D D
Sbjct: 79  NRRTGRPVEPESEFI-IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDAD 134

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
           +PENS        L  I  D  +N  + YS+    A       F + P+ G L V + LD
Sbjct: 9   LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
           RE+ + + L   A D       +     I ++D NDN P F  + ++ SVPE    G  V
Sbjct: 68  RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
           + V+  + + P                                +NG++ Y +VS   +  
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRIVSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVD 390
             ++F+IN ++G I T+ A LD E V  Y  ++QA D  G P   +S+T T    V D
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHH 363
           RG    ++    +D   N  + YSV    A+     +F INP SG  ++T  LD E +  
Sbjct: 14  RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +     A D     + + + +  NV+D+NDN P F     N  V E    GT + +V A+
Sbjct: 74  FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 424 DLD 426
           D D
Sbjct: 134 DAD 136

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 94/215 (43%), Gaps = 43/215 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
           I E++P+ + V  L A D D   N  + + +   EA+ F ++ P  G++ + Q LDRE K
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
           S +T+E    D          K  I++ D NDN P F ++ YS  +PEN  VG       
Sbjct: 77  SEFTVEFSVSDH---QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------- 126
Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
                +P+F                     V  TD D G  G V YS      +  F+I+
Sbjct: 127 -----TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAID 159
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
              GI T+  +LDYE    Y   V A  QD  +P+
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           ED P GS V Q+   D D   N  + + V  + A+  F++ P +G+  L   LD E    
Sbjct: 22  EDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +       D    +   T  V   V D+NDN P F   P ++ + EN  +GT +  V+A 
Sbjct: 79  FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
           D D G
Sbjct: 136 DPDLG 140

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
           I E++P+ + V  L A D D   N  + + +   EA+ F ++ P  G++ + Q LDRE K
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
           S +T+E    D +G  ++    K  I++ D NDN P F ++ YS  +PEN  VG      
Sbjct: 77  SEFTVEFSVSDHQGVITR----KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG------ 126
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI 343
                 +P+F                     V  TD D G  G V YS      +  F+I
Sbjct: 127 ------TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAI 158
Query: 344 NPQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
           +   GI T+  +LDYE    Y   V A  QD  +P+
Sbjct: 159 DSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           ED P GS V Q+   D D   N  + + V  + A+  F++ P +G+  L   LD E    
Sbjct: 22  EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +       D    +   T  V   V D+NDN P F   P ++ + EN  +GT +  V+A 
Sbjct: 79  FTVEFSVSDHQGVI---TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
           D D G
Sbjct: 136 DPDLG 140

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKLD 220
           +PENS        L  I  D  +N  + YS+    A       F + P+ G L V + LD
Sbjct: 9   LPENS-RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 221 REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
           RE+ + + L   A D       +     I ++D NDN P F  + ++ SVPE    G  V
Sbjct: 68  RELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN-- 338
           + V+  + + P                                +NG++ Y ++S   +  
Sbjct: 128 MTVTAIDADDP------------------------------NALNGMLRYRILSQAPSTP 157
Query: 339 --DVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDT-GKPM--MSSTVTVYFNVVD 390
             ++F+IN ++G I T+ A LD E V  Y  ++QA D  G P   +S+T T    V D
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHH 363
           RG    ++    +D   N  + YSV    A+     +F INP SG  ++T  LD E +  
Sbjct: 14  RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +     A D     + + + +  NV+D+NDN P F     N  V E    GT + +V A+
Sbjct: 74  FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 424 DLD 426
           D D
Sbjct: 134 DAD 136

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPF-SLGPVDGLLRVAQKLDREIK 224
           I E++P+ + V  L A D D   N  + + +   EA+ F ++ P  G++ + Q LDRE K
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 225 SNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVS 284
           S +T+E    D          K  I++   NDN P F ++ YS  +PEN  VG       
Sbjct: 77  SEFTVEFSVSDH---QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVG------- 126
Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
                +P+F                     V  TD D G  G V YS      +  F+I+
Sbjct: 127 -----TPIFI--------------------VNATDPDLGAGGSVLYSFQP--PSPFFAID 159
Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQA--QDTGKPM 377
              GI T+  +LDYE    Y   V A  QD  +P+
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL 194

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           ED P GS V Q+   D D   N  + + V  + A+  F++ P +G+  L   LD E    
Sbjct: 22  EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           +       D    +   T  V   V  +NDN P F   P ++ + EN  +GT +  V+A 
Sbjct: 79  FTVEFSVSDHQGVI---TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 135
Query: 424 DLDSG 428
           D D G
Sbjct: 136 DPDLG 140

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 35/199 (17%)
Query: 196 IINSEA--TPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLL 252
           II  E+  T F +   DG +   ++LDRE K+ Y L     DR    S    +KF I++ 
Sbjct: 36  IIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVS 95
Query: 253 DENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRV 312
           D NDN PIF  K ++ SVPE   +G +V +V+  + + P  +                  
Sbjct: 96  DINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAG----------------- 138
Query: 313 GQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD 372
                       +  VTY ++    N+ F+++    IFT  A LD E    Y  +V+A+D
Sbjct: 139 ------------HATVTYQIIK--GNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
Query: 373 T-GKPMMSSTVTVYFNVVD 390
             G    SST TV   + D
Sbjct: 185 ALGLTGESSTATVIIRLTD 203

>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I Length = 316

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 56/332 (16%)
Query: 83  GRLEYSIVSGDDEEIFTI---NP-----SNGTLSNLKHLDRET---KSSYNLVVMATDMA 131
           G+  + +    D+E F I   NP     +NG +   K  D E    + + +  V+ T+M 
Sbjct: 20  GKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMG 79
Query: 132 KPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQ 188
                + +   +V I+++DVND  P FI      +  +  N+P NT V  L+A D D   
Sbjct: 80  HNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 139
Query: 189 NSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKF 247
           N  + Y I+       F +    G++R       ++   Y L +KA+D+           
Sbjct: 140 N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ----------- 186
Query: 248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLP 307
                     N   D + + ++  E +S+             +P F  P Y  ++ E+  
Sbjct: 187 ----------NGKVDDRRFQSTPEERLSIVG--------GKRAPQFYMPSYEAEIPENQK 228
Query: 308 RGSRVGQVFTTDADEGVNGVVTYSVVSD-WANDVFSINPQSGIFTLTAKLDYEDV---HH 363
           + S    + +  A    +  + Y++ +       F+I P SGI  L  +LD+ED+   H 
Sbjct: 229 KDS---DIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHV 285
Query: 364 YIFVVQA-QDTGKPMMSSTVTVYFNVVDLNDN 394
           Y  +V A +D+G    S++V +   V D+NDN
Sbjct: 286 YSLIVTATEDSGG--FSTSVDLTIRVTDVNDN 315

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 59  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 118
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 119 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 146
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 147 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 206
Query: 383 TVYFNVVDLNDN 394
                V D+NDN
Sbjct: 207 KAVITVKDINDN 218

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      + +   +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 57  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 116
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 117 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 144
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 145 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 204
Query: 383 TVYFNVVD 390
                V D
Sbjct: 205 KAVITVKD 212

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 60  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 120 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 147
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 148 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 207
Query: 383 TVYFNVVD 390
                V D
Sbjct: 208 KAVITVKD 215

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ + LT+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 117
Query: 271 PENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGV 327
            E    G +V++VS                                 TDAD+ V   N  
Sbjct: 118 AEGAVPGTSVMKVS--------------------------------ATDADDDVNTYNAA 145
Query: 328 VTYSVVSD----WANDVFSINPQSGIFTL-TAKLDYEDVHHYIFVVQAQDTGKPMMSSTV 382
           + Y++VS        ++F++N  +G+ ++ T+ LD E    Y  VVQA D     +S+T 
Sbjct: 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTA 205
Query: 383 TVYFNVVD 390
                V D
Sbjct: 206 KAVITVKD 213

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTY---SVVSDWANDV 340
           S  NDN PVF E      + E+ P G+ V Q+  TDAD G N  + Y   + V+     +
Sbjct: 5   SSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRL 64
Query: 341 FSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392
           F++N  +G+ T+   LD E+   +   V A D       +TVT+  NV D+N
Sbjct: 65  FALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI--NVTDVN 114

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 159 ITANETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-FSLGPVDGLLRV 215
           I A    IPEN   P    V  +   +  EG    +    ++ +    F +  + G + V
Sbjct: 2   ILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSV 61
Query: 216 AQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 275
            + LDRE  +NY LE++  D          +  I ++D+NDN P+F    Y   V E   
Sbjct: 62  TRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSP 121
Query: 276 VGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD 335
            G TV++++  + + P     +  +++L+  P                          + 
Sbjct: 122 TGTTVMRMTAFDADDPSTDNALLRYNILKQTP--------------------------TK 155
Query: 336 WANDVFSINPQSG-IFTLTAK--LDYEDVH--HYIFVVQAQDTG 374
            + ++F I+P+ G I T+ +   LD E +    Y  V++A+D G
Sbjct: 156 PSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMG 199

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
           VG+V  ++  EG    ++   V      +F IN  SG  ++T  LD E + +Y   V+  
Sbjct: 21  VGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVT 80
Query: 372 DTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
           D    ++   V +  +V+D NDN P+F   P    V E    GT +  + A D D
Sbjct: 81  DLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDAD 135

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 48/218 (22%)
Query: 168 ENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TP----FSLGPVDGLLRVAQKLDRE 222
           E  P    +  +K+    EG+   V YSI    A TP    F +    G L+V + LDRE
Sbjct: 13  EKGPFPKNLVQIKSNKDKEGK---VFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE 69
Query: 223 IKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 282
             + YTL   A      +     +  I + D+NDN P F  + +  SV E    G +V++
Sbjct: 70  RIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVME 129
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGVVTYSVVSDWA-- 337
           V+                                 TDAD+ V   N  + Y+++S     
Sbjct: 130 VT--------------------------------ATDADDDVNTYNAAIAYTILSQDPEL 157
Query: 338 --NDVFSINPQSGIFT-LTAKLDYEDVHHYIFVVQAQD 372
              ++F+IN  +G+ + +T  LD E    Y  VVQA D
Sbjct: 158 PDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 84  RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQ 143
           RL    V  D +  F IN + G++S  + LDRET ++Y L V  TD +    K L     
Sbjct: 37  RLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASG---KTLEGPVP 93
Query: 144 VSIVIRDVNDNAPEFITANETT-IPENSPLNTVVAALKAIDRDE--GQNSYVEYSIINSE 200
           + +++ D NDN P F        + E SP  T V  + A D D+    N+ + Y+I   +
Sbjct: 94  LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNI--RQ 151
Query: 201 ATP-------FSLGPVDG-LLRVAQK--LDREIKSN--YTLEIKAKD 235
            TP       F + P  G ++ V     LDRE   N  Y L I+A+D
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQD 198

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 49/115 (42%)
Query: 312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ 371
           VG+V  +D  EG    +T   V       F IN  +G  ++T  LD E +  Y   V+  
Sbjct: 22  VGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT 81
Query: 372 DTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLD 426
           D     +   V +   V+D NDN P+F   P    V E    GT +  + A D D
Sbjct: 82  DASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136

>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Protocadherin-15 Ec1-2 Form I Length = 242

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT-----TDADEGVNGVVTYSVVSD-- 335
           V D NDNSP F    Y   V E  P G+ +   F+     TD D+G NG + Y +  +  
Sbjct: 117 VRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPE 176
Query: 336 --WANDVFSINPQ-SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDL 391
              +ND F I    +G   L  +L+YED   Y  ++QA D  + +     T     VDL
Sbjct: 177 DPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDL 235

>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The Calcium Bound State, Nmr, 20 Structures Length = 146

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 211 GLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV 270
           G L+V Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV
Sbjct: 60  GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSV 119
Query: 271 PENISVGATVLQVSDTN 287
            E    G +V++VS T+
Sbjct: 120 AEGAVPGTSVMKVSATD 136

>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 85  LEYSIVS-GDDEE---IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSS 140
           L YS+   G D+    IF INP +G LS  K LDRE  + ++L   A D+      ++ +
Sbjct: 36  LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING---NQVEN 92
Query: 141 TTQVSIVIRDVNDNAPEF 158
              + I + D+NDN PEF
Sbjct: 93  PIDIVINVIDMNDNRPEF 110

>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 328 VTYSVVSDWAND----VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVT 383
           + YSV    A+     +F INP SG  ++T  LD E +  +     A D     + + + 
Sbjct: 36  LRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPID 95
Query: 384 VYFNVVDLNDNPPLF 398
           +  NV+D+NDN P F
Sbjct: 96  IVINVIDMNDNRPEF 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-99
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-79
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-71
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-47
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	6e-97
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	7e-76
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-74
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	4e-52
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-96
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-79
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	4e-72
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-56
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-90
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	1e-77
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-77
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-66
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-47
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-43
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	6e-12
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-85
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-84
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-53
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-48
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-76
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-54
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	4e-50
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	5e-25
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-76
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	5e-57
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	6e-55
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	6e-29
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	1e-23
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	2e-62
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	5e-62
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	8e-42
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	2e-33
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	6e-04
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-54
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-47
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-31
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-29
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-53
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	6e-52
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	3e-34
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-29
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-51
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	3e-48
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	3e-29
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-23
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-51
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-44
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	3e-31
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-28
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-49
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-48
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	6e-29
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	2e-27
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	6e-49
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	4e-48
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	3e-31
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	5e-29
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	2e-45
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	4e-41
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	9e-31
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	7e-24
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	3e-40
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	5e-32
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	1e-30
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	3e-06
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	4e-34
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	2e-26
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	1e-25
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	3e-06
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-26
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	1e-24
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	1e-22
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	4e-24
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-21
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	4e-21
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	2e-22
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	7e-18
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	3e-16
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	3e-21
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-17
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	2e-16
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-20
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	8e-18
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	2e-15
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	8e-20
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	1e-16
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	5e-15
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	8e-18
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	8e-16
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	1e-13
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	2e-16
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	2e-15
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	5e-06
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	9e-05

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  307 bits (788), Expect = 1e-99
 Identities = 118/445 (26%), Positives = 184/445 (41%), Gaps = 93/445 (20%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D NDN P F++ V+   V E    G+ V +V  TDAD+ VN                 
Sbjct: 98  VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT---------------- 141

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKH-LDR 115
                                N  + Y+IVS D E     +FT+N   G +S L   LDR
Sbjct: 142 --------------------YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181

Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNT 174
           E+  +Y LVV A D+       LS+T +  I ++D+NDNAP F  +  +  +PEN   N 
Sbjct: 182 ESYPTYTLVVQAADLQGEG---LSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-NA 237

Query: 175 VVAALKAIDRDEGQN--SYVEYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYT 228
            +A LK  D D          Y+++N     F +       DG+L+ A+ LD E K  Y 
Sbjct: 238 RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYI 297

Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L ++ ++      S                        +A+V          + V D N+
Sbjct: 298 LHVRVENEEPFEGSLVPS--------------------TATV---------TVDVVDVNE 328

Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
             P+F       +V ED   G  +      + D  ++  +TY +  D AN    INP++G
Sbjct: 329 A-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLEINPETG 386

Query: 349 IFTLTAKLDYEDVHH-----YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPP 403
                A++D ED  H     Y+ ++ A D G P+ + T T+   ++D+NDN P+ +  P 
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPE--PR 444

Query: 404 NIPVYENVTLGTGLASVHAVDLDSG 428
           N+   +          +  +D D  
Sbjct: 445 NMQFCQRNPQPHI---ITILDPDLP 466

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  254 bits (650), Expect = 5e-79
 Identities = 96/433 (22%), Positives = 154/433 (35%), Gaps = 93/433 (21%)

Query: 15  VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 74
           +      E+   G     +    ++      V YS+    A+                  
Sbjct: 4   IPPISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADK----------------- 45

Query: 75  DYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP 134
                                 +F I    G L   + LDRE  + Y L   A       
Sbjct: 46  ------------------PPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA 87

Query: 135 QKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNS 190
              +    ++ I + D NDN PEF     E ++ E +   T V  + A D D+     N+
Sbjct: 88  ---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144

Query: 191 YVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSR 244
            + Y+I++ +        F++    G++ V    LDRE    YTL ++A D      S+ 
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204

Query: 245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLE 304
            K  I + D NDN P+F+  +Y   VPEN  V A +  +                     
Sbjct: 205 AKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLK-------------------- 243

Query: 305 DLPRGSRVGQVFTTDADEGVNG--VVTYSVVSDWANDVFSINP----QSGIFTLTAKLDY 358
                        TD D          Y+VV+D  +  F +        GI      LD+
Sbjct: 244 ------------VTDDDAPNTPAWKAVYTVVND-PDQQFVVVTDPTTNDGILKTAKGLDF 290

Query: 359 EDVHHYIFVVQAQDTG---KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGT 415
           E    YI  V+ ++       ++ ST TV  +VVD+N+  P+F P    + V E+  +G 
Sbjct: 291 EAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQ 349

Query: 416 GLASVHAVDLDSG 428
            + S  A + D+ 
Sbjct: 350 EITSYTAREPDTF 362

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  234 bits (598), Expect = 2e-71
 Identities = 79/410 (19%), Positives = 127/410 (30%), Gaps = 91/410 (22%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+PVF+   Y   V E+    +R+  +  TD D                     
Sbjct: 211 VKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDDDAPNTP---------------- 253

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
                                  +  Y++V  D ++ F +        G L   K LD E
Sbjct: 254 ---------------------AWKAVYTVV-NDPDQQFVVVTDPTTNDGILKTAKGLDFE 291

Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
            K  Y L V   +        + ST  V++ + DVN+ AP F+ A     +PE+  +   
Sbjct: 292 AKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350

Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE-----IKSNYTLE 230
           + +  A + D   +  + Y I    A    + P  G +    ++DRE       S Y   
Sbjct: 351 ITSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVAL 410

Query: 231 IKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNS 290
           I A D G P  +      + LLD NDN PI + ++             T+          
Sbjct: 411 IIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITI---------- 460

Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG-VVTYSVVSDWA-NDVFSINPQSG 348
                                       D D   N    T  +    + N     N  + 
Sbjct: 461 ---------------------------LDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQ 493

Query: 349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
              +       ++  Y   ++  D       +T+ V  +V D        
Sbjct: 494 ESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDV--HVCDCEGTVNNC 541

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  170 bits (432), Expect = 2e-47
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 48/269 (17%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D N+  P+F       +V ED   G  +      + D  ++  +TY +  D AN    
Sbjct: 323 VVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTAN-WLE 380

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
           INP++G     A++D ED                                        S+
Sbjct: 381 INPETGAIFTRAEMDREDAEHV----------------------------------KNST 406

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
           Y  +++ATD   P     + T  + +V+ DVNDNAP           + +P   ++    
Sbjct: 407 YVALIIATDDGSPI---ATGTGTLLLVLLDVNDNAPIP-EPRNMQFCQRNPQPHIIT--- 459

Query: 181 AIDRDEGQNSY-VEYSIINSEATPFSLGPVD--GLLRVAQKLDREIKSNYTLEIKAKDRG 237
            +D D   N+      + +  +  +++   D      + Q         Y + +K  D  
Sbjct: 460 ILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQ 519

Query: 238 EPSKSSRTKFFIRLLDENDNNPIFDSKSY 266
              + +     + + D            +
Sbjct: 520 NKDQVTTLD--VHVCDCEGTVNNCMKAHH 546

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  300 bits (771), Expect = 6e-97
 Identities = 114/446 (25%), Positives = 174/446 (39%), Gaps = 89/446 (19%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----DW 54
           V D NDN P F   V+   V E    G+ V  V   DAD+   +NG++ Y ++S      
Sbjct: 98  VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTP 157

Query: 55  ANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
           + ++F+IN ++G                             +I T+            LD
Sbjct: 158 SPNMFTINNETG-----------------------------DIITVAAG---------LD 179

Query: 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLN 173
           RE    Y L++ ATDM   P   LS+T    I + DVNDN PEF        +PEN   +
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-D 238

Query: 174 TVVAALKAIDRDEGQN--SYVEYSII-NSEATPFSLGPV----DGLLRVAQKLDREIKSN 226
            +VA L   D+D+         Y I        F++       DGL+ V + +D E    
Sbjct: 239 VIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRM 298

Query: 227 YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDT 286
           + L + A+++   +K  +                      +A+V          + V D 
Sbjct: 299 FVLTVAAENQVPLAKGIQHPP-----------------QSTATV---------SVTVIDV 332

Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 346
           N+N P F+         E L  G+ +  +   D D  +   + Y+ +SD AN    I+P 
Sbjct: 333 NEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLKIDPV 390

Query: 347 SGIFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMP 402
           +G  T  A LD E  +     Y     A D G P MS T T+   ++D+NDN P    +P
Sbjct: 391 NGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQV--LP 448

Query: 403 PNIPVYENVTLGTGLASVHAVDLDSG 428
                 E         ++ A+D D  
Sbjct: 449 QEAETCETP--EPNSINITALDYDID 472

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  246 bits (629), Expect = 7e-76
 Identities = 105/435 (24%), Positives = 161/435 (37%), Gaps = 97/435 (22%)

Query: 18  FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
            ++ E+   G    ++    +D   N  + YSV    A+                     
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQ-------------------- 45

Query: 78  DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
                              IF INP +G LS  K LDRE  + ++L   A D+       
Sbjct: 46  ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 87

Query: 138 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 194
           + +   + I + D+NDN PEF+      ++PE S   T V  + AID D+    N  + Y
Sbjct: 88  VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147

Query: 195 SIINSEATP-----FSLGPVDGLLR-VAQKLDREIKSNYTLEIKAKDRGEPSK---SSRT 245
            I++   +      F++    G +  VA  LDRE    YTL I+A D         S+  
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207

Query: 246 KFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLED 305
              I + D NDN P F + ++   VPEN  V   V  ++                     
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLT--------------------- 245

Query: 306 LPRGSRVGQVFTTDADEGVNG--VVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYE 359
                       TD D+         Y +        F+I    N   G+ T+   +D+E
Sbjct: 246 -----------VTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294

Query: 360 DVHHYIFVVQAQDTG------KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTL 413
               ++  V A++        +    ST TV   V+D+N+NP  F P P  I   E +  
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPY-FAPNPKIIRQEEGLHA 353

Query: 414 GTGLASVHAVDLDSG 428
           GT L ++ A D D  
Sbjct: 354 GTMLTTLTAQDPDRY 368

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  242 bits (620), Expect = 1e-74
 Identities = 84/416 (20%), Positives = 125/416 (30%), Gaps = 91/416 (21%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D NDN P F+   +  +V E+      V  +  TD D+                    
Sbjct: 213 VTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDKDQPHTP---------------- 255

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
                                     Y I  GD    F I        G ++ +K +D E
Sbjct: 256 ---------------------AWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE 294

Query: 117 TKSSYNLVVMATDMAKPPQK---RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPL 172
           T   + L V A +     +       ST  VS+ + DVN+N P F          E    
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHA 353

Query: 173 NTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE----IKSNYT 228
            T++  L A D D      + Y+ ++  A    + PV+G +     LDRE      + Y 
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYN 413

Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
               A D G P  S      I LLD NDN P        A   E     +  +       
Sbjct: 414 ATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSINITA----- 466

Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG---VVTYSVVSDWANDVFSINP 345
                                         D D   N         +        ++IN 
Sbjct: 467 -----------------------------LDYDIDPNAGPFAFDLPLSPVTIKRNWTINR 497

Query: 346 QSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP 400
            +G    L  K+ + +   Y   +   D+G P  S+   +   V   + N    D 
Sbjct: 498 LNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDV 553

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  182 bits (465), Expect = 4e-52
 Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 48/273 (17%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D N+N P F+         E L  G+ +  +   D D  +   + Y+ +SD AN    
Sbjct: 329 VIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN-WLK 386

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
           I+P +G  T  A LD E                                         + 
Sbjct: 387 IDPVNGQITTIAVLDRESP-----------------------------------NVKNNI 411

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAALK 180
           YN   +A+D   PP   +S T  + I + D+NDNAP+ +   E    E    N++   + 
Sbjct: 412 YNATFLASDNGIPP---MSGTGTLQIYLLDINDNAPQVLP-QEAETCETPEPNSIN--IT 465

Query: 181 AIDRDEGQNSY-VEYSIINSEAT---PFSLGPVDG-LLRVAQKLDREIKSNYTLEIKAKD 235
           A+D D   N+    + +  S  T    +++  ++G   ++  K+       Y + I   D
Sbjct: 466 ALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITD 525

Query: 236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
            G P KS+ +   +++   + N    D   +  
Sbjct: 526 SGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  298 bits (765), Expect = 4e-96
 Identities = 114/444 (25%), Positives = 166/444 (37%), Gaps = 92/444 (20%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P F++ V+   V E +  G++V  V  TD D+ ++                 
Sbjct: 104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS---------------- 147

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDR 115
                                NG L YSI+  D       +FTIN   G +S     LDR
Sbjct: 148 --------------------LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 187

Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNT 174
           E    Y L V ATD+       LS   +  I I D NDNAP F        +PEN     
Sbjct: 188 EKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GF 243

Query: 175 VVAALKAIDRDEGQN--SYVEYSIINSEATPFSLGP----VDGLLRVAQKLDREIKSNYT 228
            V  L   D D          Y I  +E   F++        G+L  A+ LD E++  Y 
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303

Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L+I  ++    S    T                     +A+V          + V D N+
Sbjct: 304 LQITVENAEPFSVPLPTS--------------------TATV---------TVTVEDVNE 334

Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
             P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +G
Sbjct: 335 A-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 392

Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
           I T    LD E  +     Y  ++   D G  + + T T+  +V+D+NDN P+  P    
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSP---- 448

Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
             V+           +   D D  
Sbjct: 449 -RVFTMCDQNPEPQVLTISDADIP 471

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  255 bits (653), Expect = 1e-79
 Identities = 101/439 (23%), Positives = 159/439 (36%), Gaps = 93/439 (21%)

Query: 9   PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
             +  P       E  P   R+ Q+    +++     V YS+    A++           
Sbjct: 6   HDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADN----------- 51

Query: 69  TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
                                     + +F I    G +   + LDRE    Y L   A 
Sbjct: 52  ------------------------PPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV 87

Query: 129 DMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE- 186
                P   +    +++I + D NDN P+F       ++ E     T V A+ A D D+ 
Sbjct: 88  SENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDN 144

Query: 187 --GQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGE 238
               N  + YSI+  +        F++    G++ +    LDRE    YTL ++A D   
Sbjct: 145 IDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEG 204

Query: 239 PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVY 298
              S   K  I++ D NDN PIFD K+Y+A VPEN  +G  V ++S              
Sbjct: 205 AGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLS-------------- 249

Query: 299 AFDVLEDLPRGSRVGQVFTTDADE-GVNGVVTYSVVSDWANDVFSINP----QSGIFTLT 353
                              TD D  G         +       F+I        GI T  
Sbjct: 250 ------------------VTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTA 291

Query: 354 AKLDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYEN 410
             LD+E    Y+  +  ++      P+ +ST TV   V D+N+  P F P    + V E+
Sbjct: 292 KGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSED 350

Query: 411 VTLGTGLASVHAVDLDSGK 429
           ++ G  + S+ A D D  +
Sbjct: 351 LSRGEKIISLVAQDPDKQQ 369

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  236 bits (603), Expect = 4e-72
 Identities = 71/408 (17%), Positives = 119/408 (29%), Gaps = 89/408 (21%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           ++D NDN+P+F    Y   V E+   G  V ++  TD D                     
Sbjct: 217 ITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGT----------------- 258

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
                                        +  ++   F I        G L+  K LD E
Sbjct: 259 ---------------------PAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 297

Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
            +  Y L +   +         +ST  V++ + DVN+  P F+ A     + E+      
Sbjct: 298 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEK 356

Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEI 231
           + +L A D D+ Q   + Y I N  A   ++   +G++     LDRE +    + YT+ +
Sbjct: 357 IISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 416

Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSP 291
              D G    +      + +LD NDN P+   + ++           T+           
Sbjct: 417 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----------- 465

Query: 292 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV-TYSVVSDWANDVFSINPQSGIF 350
                                     +DAD   N      S+         +     G  
Sbjct: 466 --------------------------SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 499

Query: 351 TLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
            L +         Y   V   D       + V     V          
Sbjct: 500 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIKC 545

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  193 bits (493), Expect = 3e-56
 Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 50/288 (17%)

Query: 155 APEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 208
             +++    + +  E  P    +  +K+   ++ + + V YSI    A       F +  
Sbjct: 5   HHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIEW 61

Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
             G + V + LDRE    Y L   A            +  I ++D+NDN P F    +  
Sbjct: 62  ETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG 121

Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVN 325
           SV E +  G  V+ VS                                 TD D+    +N
Sbjct: 122 SVREGVQPGTQVMAVS--------------------------------ATDEDDNIDSLN 149

Query: 326 GVVTYSVVS----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSS 380
           GV++YS++     +   ++F+IN ++G I  +   LD E    Y   VQA D     +S 
Sbjct: 150 GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209

Query: 381 TVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
                  + D NDN P+FDP      V EN  +G  +  +   DLD  
Sbjct: 210 EGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMP 256

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  291 bits (746), Expect = 3e-90
 Identities = 113/444 (25%), Positives = 165/444 (37%), Gaps = 92/444 (20%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P F++ V+   V E +  G++V  V  TD D+ ++                 
Sbjct: 253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS---------------- 296

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD----DEEIFTINPSNGTLS-NLKHLDR 115
                                NG L YSI+  D       +FTIN   G +S     LDR
Sbjct: 297 --------------------LNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR 336

Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNT 174
           E    Y L V ATD+       LS   +  I I D NDNAP F        +PEN     
Sbjct: 337 EKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-GF 392

Query: 175 VVAALKAIDRDEGQ--NSYVEYSIINSEATPFSLGPV----DGLLRVAQKLDREIKSNYT 228
            V  L   D D          Y I  +E   F++        G+L  A+ LD E++  Y 
Sbjct: 393 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 452

Query: 229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTND 288
           L+I  ++    S    T                     +A+V          + V D N+
Sbjct: 453 LQITVENAEPFSVPLPTS--------------------TATV---------TVTVEDVNE 483

Query: 289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSG 348
             P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +G
Sbjct: 484 A-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDNG 541

Query: 349 IFTLTAKLDYEDVH----HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
           I T    LD E  +     Y  ++   D G  + + T T+  +V+D+NDN P+  P    
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601

Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
           +              +   D D  
Sbjct: 602 MCDQNPEPQV-----LTISDADIP 620

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  257 bits (658), Expect = 1e-77
 Identities = 101/454 (22%), Positives = 158/454 (34%), Gaps = 100/454 (22%)

Query: 1   VSDTNDNSPVFSE-------PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD 53
           V    +              P       E  P   R+ Q+    +++     V YS+   
Sbjct: 140 VLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQ 196

Query: 54  WANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHL 113
            A++                                     + +F I    G +   + L
Sbjct: 197 GADN-----------------------------------PPQGVFRIEWETGWMLVTRPL 221

Query: 114 DRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPL 172
           DRE    Y L   A      P   +    +++I + D NDN P+F       ++ E    
Sbjct: 222 DREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQP 278

Query: 173 NTVVAALKAIDRDE---GQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREI 223
            T V A+ A D D+     N  + YSI+  +        F++    G++ +    LDRE 
Sbjct: 279 GTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREK 338

Query: 224 KSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
              YTL ++A D      S   K  I++ D NDN PIFD K+Y+A VPEN          
Sbjct: 339 FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN---------- 388

Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE-GVNGVVTYSVVSDWANDVFS 342
                                    G  V ++  TD D  G         +       F+
Sbjct: 389 -----------------------EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 425

Query: 343 INP----QSGIFTLTAKLDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVDLNDNP 395
           I        GI T    LD+E    Y+  +  ++      P+ +ST TV   V D+N+  
Sbjct: 426 ITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-A 484

Query: 396 PLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGK 429
           P F P    + V E+++ G  + S+ A D D  +
Sbjct: 485 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQ 518

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  256 bits (655), Expect = 3e-77
 Identities = 96/446 (21%), Positives = 153/446 (34%), Gaps = 85/446 (19%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLED-LPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVF 59
            +D +   P FS   Y F V    L RG ++G+V  +D     +G+          +  F
Sbjct: 27  NADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG------DSRF 80

Query: 60  SINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKS 119
            + P   +                      V    +  FTI+             R  K 
Sbjct: 81  RVLPDGTVLVKRH-----------------VKLHKDTKFTISTW---------DARGIKH 114

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF----ITANETTIPENSPLNTV 175
           S N+ V +        +  S ++++ ++         +            + EN      
Sbjct: 115 STNIAVASKRHRSGE-EAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER-GPF 172

Query: 176 VAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKLDREIKSNYTLE 230
              L  I  ++ + + V YSI    A       F +    G + V + LDRE    Y L 
Sbjct: 173 PKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLS 232

Query: 231 IKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNS 290
             A            +  I ++D+NDN P F    +  SV E +  G  V+ VS      
Sbjct: 233 SHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS------ 286

Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVS----DWANDVFSI 343
                                      TD D+    +NGV++YS++     +   ++F+I
Sbjct: 287 --------------------------ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI 320

Query: 344 NPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMP 402
           N ++G I  +   LD E    Y   VQA D     +S        + D NDN P+FDP  
Sbjct: 321 NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKT 380

Query: 403 PNIPVYENVTLGTGLASVHAVDLDSG 428
               V EN  +G  +  +   DLD  
Sbjct: 381 YTALVPEN-EIGFEVQRLSVTDLDMP 405

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  226 bits (577), Expect = 4e-66
 Identities = 71/419 (16%), Positives = 119/419 (28%), Gaps = 89/419 (21%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           ++D NDN+P+F    Y   V E+   G  V ++  TD D                     
Sbjct: 366 ITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGT----------------- 407

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSN----GTLSNLKHLDRE 116
                                        +  ++   F I        G L+  K LD E
Sbjct: 408 ---------------------PAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE 446

Query: 117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTV 175
            +  Y L +   +         +ST  V++ + DVN+  P F+ A     + E+      
Sbjct: 447 LRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEK 505

Query: 176 VAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEI 231
           + +L A D D+ Q   + Y I N  A   ++   +G++     LDRE +    + YT+ +
Sbjct: 506 IISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIM 565

Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSP 291
              D G    +      + +LD NDN P+   + ++           T+           
Sbjct: 566 LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTI----------- 614

Query: 292 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV-VTYSVVSDWANDVFSINPQSGIF 350
                                     +DAD   N      S+         +     G  
Sbjct: 615 --------------------------SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 648

Query: 351 TLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYE 409
            L +         Y   V   D       + V     V                     
Sbjct: 649 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAIKCQEKLVGGFDLP 705

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  171 bits (436), Expect = 7e-47
 Identities = 56/320 (17%), Positives = 101/320 (31%), Gaps = 44/320 (13%)

Query: 126 MATDMAKPPQK----RLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENS-PLNTVVAAL 179
           M +   +         L     V  +  DV+   P F +A    ++          +  +
Sbjct: 1   MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60

Query: 180 KAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEP 239
              D    ++   +          F + P DG + V + +     + +T+        + 
Sbjct: 61  NFSDCTTRKHGLYDVGDSR-----FRVLP-DGTVLVKRHVKLHKDTKFTISTWDARGIKH 114

Query: 240 SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSE---- 295
           S +         +    +    ++ S S+ +P           V    +           
Sbjct: 115 STNI-------AVASKRHRSGEEAHSRSSKLP-----------VLTFPETHTGLKRKKRD 156

Query: 296 ---PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA----NDVFSINPQSG 348
              P       E  P   R+ Q+    +++     V YS+    A      VF I  ++G
Sbjct: 157 WVIPPIKVSENERGPFPKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 213

Query: 349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY 408
              +T  LD E+   Y+    A       +   + +  NV+D NDN P F        V 
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 273

Query: 409 ENVTLGTGLASVHAVDLDSG 428
           E V  GT + +V A D D  
Sbjct: 274 EGVQPGTQVMAVSATDEDDN 293

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  160 bits (407), Expect = 6e-43
 Identities = 52/287 (18%), Positives = 95/287 (33%), Gaps = 56/287 (19%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D N+  P F   V   DV EDL RG ++  +   D D+     ++Y + +D A     
Sbjct: 478 VEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR---- 532

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK-- 118
                                                 T+N  NG ++   +LDRE++  
Sbjct: 533 ------------------------------------WLTVNKDNGIVTGNGNLDRESEYV 556

Query: 119 --SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVV 176
             ++Y ++++ TD         + T  + + + DVNDN P       T   +N     + 
Sbjct: 557 KNNTYTVIMLVTDDGVSV---GTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLT 613

Query: 177 AALKAIDRDEGQNSY-VEYSIIN-SEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK 234
                 D D   N+Y  + S+ + S+ T  +     G   +     +  K +Y++ +   
Sbjct: 614 I----SDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669

Query: 235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVL 281
           D     + +       +            K         I V    +
Sbjct: 670 DAQNNPQLTVVN--ATVCSCEGKAIKCQEKLVGGFDLPIILVILGSV 714

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 32/179 (17%), Positives = 48/179 (26%), Gaps = 48/179 (26%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN PV S  V+        P+   +     +DAD   N                 
Sbjct: 585 VLDVNDNGPVPSPRVFTMCDQNPEPQVLTI-----SDADIPPNT---------------- 623

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                    + S+  G D        S GT   L    +  K  
Sbjct: 624 ----------------------YPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGD 661

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENSPLNTVVAAL 179
           Y++ V+ +D    PQ      T V+  +      A +              L  + + L
Sbjct: 662 YSIYVLLSDAQNNPQ-----LTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVL 715

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  267 bits (684), Expect = 1e-85
 Identities = 87/399 (21%), Positives = 143/399 (35%), Gaps = 90/399 (22%)

Query: 1   VSDTNDNSPVFSEPV--YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 58
           V D ND  P F          V  + P  + V  +   D D   N               
Sbjct: 101 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNI-------------- 146

Query: 59  FSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK 118
                                       Y IV       F ++  +G +        +  
Sbjct: 147 ---------------------------HYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 179

Query: 119 SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVA 177
             Y L V A D       R   +T    +       AP+F + + E  IPEN   ++ + 
Sbjct: 180 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDII 239

Query: 178 ALKAIDRDEGQNSY-VEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN---YTLEIKA 233
           ++KA    + +  Y ++       A  F++GP  G++++A++LD E       Y+L + A
Sbjct: 240 SIKAKSFADREIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 297

Query: 234 KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVF 293
            +      S+     I                                +V+D NDN+P F
Sbjct: 298 TE-DSGGFSTSVDLTI--------------------------------RVTDVNDNAPKF 324

Query: 294 SEPVY-AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTL 352
             P Y A +V ED+P G+ + +V   D+D G N  + Y V  D     F+++  +GI   
Sbjct: 325 ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH----FAVDS-NGIIVN 379

Query: 353 TAKLDYEDV-HHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
             +LD ++   +Y F+V A+D G+P  S   TV     +
Sbjct: 380 NKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  264 bits (676), Expect = 2e-84
 Identities = 88/430 (20%), Positives = 148/430 (34%), Gaps = 93/430 (21%)

Query: 17  AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDY 76
           +  V   +    R+     T+AD    G   + +  +   + F I   +           
Sbjct: 1   SRRVTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNP---------- 47

Query: 77  EDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS------YNLVVMATDM 130
                                +    +NG +   K  D E          + ++      
Sbjct: 48  ---------------------WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHN 86

Query: 131 AKPPQKRLSSTTQVSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAIDRDEG 187
           A       +   +V I+++DVND  P FI      +  +  N+P NT V  L+A D D  
Sbjct: 87  AGIK---YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 143

Query: 188 QNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPS---KSS 243
            N  + Y I+       F +    G++R       ++   Y L +KA+D+       +  
Sbjct: 144 HN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQ 201

Query: 244 RTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVL 303
            T      +      P F   SY A +PEN    + ++ +                    
Sbjct: 202 STPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIK------------------- 242

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVFSINPQSGIFTLTAKLDYEDV- 361
                                +  + Y++         F+I P SGI  L  +LD+ED+ 
Sbjct: 243 -------------AKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 286

Query: 362 --HHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNI-PVYENVTLGTGLA 418
             H Y  +V A +      S++V +   V D+NDN P F+        V E++ LGT + 
Sbjct: 287 QPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345

Query: 419 SVHAVDLDSG 428
            V A+D DSG
Sbjct: 346 RVKAMDSDSG 355

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  182 bits (464), Expect = 3e-53
 Identities = 40/286 (13%), Positives = 79/286 (27%), Gaps = 59/286 (20%)

Query: 166 IPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVA 216
           +         +   +  + D        + +            +  P+     +G +RV 
Sbjct: 4   VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVK 60

Query: 217 QKLDREIKSN------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSK--SYSA 268
           +K D E          + +            +   +  I + D ND  P F ++     A
Sbjct: 61  KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 120

Query: 269 SVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV 328
            V  N      V  +                                   D D   N  +
Sbjct: 121 VVQLNAPPNTPVFTLQ--------------------------------ARDPDTDHN--I 146

Query: 329 TYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM----MSSTVTV 384
            Y +V D     F ++ +SG+        ++    Y+  V+A+D    +      ST   
Sbjct: 147 HYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEE 206

Query: 385 YFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
             ++V      P F        + EN    + + S+ A      ++
Sbjct: 207 RLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREI 251

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  169 bits (431), Expect = 2e-48
 Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 55/258 (21%)

Query: 3   DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
                +P F  P Y  ++ E+  + S +  +         +  + Y++            
Sbjct: 211 VGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLK----------- 256

Query: 63  PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS-- 120
                                        G     F I P++G +   K LD E      
Sbjct: 257 ---------------------------AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 289

Query: 121 -YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET--TIPENSPLNTVVA 177
            Y+L+V AT+         S++  ++I + DVNDNAP+F   +     + E+ PL T + 
Sbjct: 290 VYSLIVTATE-DSGG---FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345

Query: 178 ALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDRE-IKSNYTLEIKAKDR 236
            +KA+D D G N+ +EY + +     F++   +G++   ++LD +   + Y   + AKD+
Sbjct: 346 RVKAMDSDSGSNAEIEYLVSDD---HFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDK 401

Query: 237 GEPSKSSRTKFFIRLLDE 254
           GEP KS      +   ++
Sbjct: 402 GEPPKSGVATVRVYTKNK 419

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  240 bits (615), Expect = 1e-76
 Identities = 73/379 (19%), Positives = 134/379 (35%), Gaps = 83/379 (21%)

Query: 30  VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSI 89
             ++  T+AD    G   + +  +   + F I   +                        
Sbjct: 6   TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP----------------------- 42

Query: 90  VSGDDEEIFTINPSNGTLSNLKHLDRETKSS------YNLVVMATDMAKPPQKRLSSTTQ 143
                   +    +NG +   K  D E          + ++      A       +   +
Sbjct: 43  --------WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK---YTDNQR 91

Query: 144 VSIVIRDVNDNAPEFI---TANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NS 199
           V I+++DVND  P FI      +  +  N+P NT V  L+A D D   N  + Y I+ + 
Sbjct: 92  VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDR 149

Query: 200 EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
               F +    G++R       ++   Y L +KA+D+                       
Sbjct: 150 TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKV------------------- 190

Query: 260 IFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTD 319
             D + + ++  E +S+             +P F  P Y  ++ E+  + S +  +    
Sbjct: 191 --DDRRFQSTPEERLSI--------VGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240

Query: 320 ADEGVNGVVTYSVV-SDWANDVFSINPQSGIFTLTAKLDYEDV---HHYIFVVQAQDTGK 375
                +  + Y++         F+I P SGI  L  +LD+ED+   H Y  +V A +   
Sbjct: 241 FA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS- 296

Query: 376 PMMSSTVTVYFNVVDLNDN 394
              S++V +   V D+NDN
Sbjct: 297 GGFSTSVDLTIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  183 bits (466), Expect = 1e-54
 Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 55/266 (20%)

Query: 1   VSDTNDNSPVF--SEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 58
           V D ND  P F          V  + P  + V  +   D D   N               
Sbjct: 96  VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--------------- 140

Query: 59  FSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETK 118
                                     + Y IV       F ++  +G +        +  
Sbjct: 141 --------------------------IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD 174

Query: 119 SSYNLVVMATDMAKPPQKR-LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVV 176
             Y L V A D       R   ST +  + I      AP+F   + E  IPEN   ++ +
Sbjct: 175 MEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI 233

Query: 177 AALKAIDRDEGQNSYVEYSIINSE--ATPFSLGPVDGLLRVAQKLDREIKS---NYTLEI 231
            ++KA       +  + Y++      A  F++GP  G++++A++LD E       Y+L +
Sbjct: 234 ISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 290

Query: 232 KAKDRGEPSKSSRTKFFIRLLDENDN 257
            A +      S+     IR+ D NDN
Sbjct: 291 TATEDS-GGFSTSVDLTIRVTDVNDN 315

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  171 bits (435), Expect = 4e-50
 Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 52/274 (18%)

Query: 176 VAALKAIDRDEGQNSYVEYSIIN---------SEATPFSLGPVDGLLRVAQKLDREIKSN 226
              ++  + D        + +            +  P+     +G +RV +K D E    
Sbjct: 6   TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65

Query: 227 ------YTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATV 280
                 + +            +   +  I + D ND  P F ++                
Sbjct: 66  EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP------------- 112

Query: 281 LQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDV 340
                                V  + P  + V  +   D D   N  + Y +V D     
Sbjct: 113 -----------------MQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGR 153

Query: 341 FSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM----MSSTVTVYFNVVDLNDNPP 396
           F ++ +SG+        ++    Y+  V+A+D    +      ST     ++V      P
Sbjct: 154 FEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAP 212

Query: 397 LFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
            F        + EN    + + S+ A      ++
Sbjct: 213 QFYMPSYEAEIPENQKKDSDIISIKAKSFADREI 246

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  103 bits (259), Expect = 5e-25
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 48/154 (31%)

Query: 5   NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
              +P F  P Y  ++ E+  + S +  +         +  + Y++ +            
Sbjct: 208 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKA------------ 252

Query: 65  SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS---Y 121
                                      G     F I P++G +   K LD E       Y
Sbjct: 253 --------------------------QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVY 286

Query: 122 NLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNA 155
           +L+V AT+ +       S++  ++I + DVNDNA
Sbjct: 287 SLIVTATEDSGG----FSTSVDLTIRVTDVNDNA 316

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  240 bits (615), Expect = 2e-76
 Identities = 98/399 (24%), Positives = 144/399 (36%), Gaps = 96/399 (24%)

Query: 8   SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGI 67
           S V++     F + E       +     TD D G                          
Sbjct: 1   SWVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-------------------------- 31

Query: 68  FTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMA 127
                         + +++Y +       IF IN   G +  +K LDRE K+ Y L   A
Sbjct: 32  --------------SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQA 77

Query: 128 TDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKAIDRDE 186
            D        L   ++  I ++D+NDNAPEF       T+PE S L T V  + A D D+
Sbjct: 78  VDFETNKP--LEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADD 135

Query: 187 ---GQNSYVEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPS 240
              G ++ + YSI+  +   FS+ P   +++ A   +DRE K  Y + I+AKD G     
Sbjct: 136 PVYGNSAKLVYSILEGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGG 194

Query: 241 KSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAF 300
            S  T   + L D NDN P F    Y  SVPE++ +G  + +V                 
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVK---------------- 238

Query: 301 DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKL 356
                             D D G N   +Y ++      +F I      Q G+  L   L
Sbjct: 239 ----------------ANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPL 282

Query: 357 DYEDVHHYIFVVQAQDTGKPM-------MSSTVTVYFNV 388
           D+E    Y   V+A +               T TV   V
Sbjct: 283 DFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  189 bits (483), Expect = 5e-57
 Identities = 77/272 (28%), Positives = 114/272 (41%), Gaps = 43/272 (15%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKLDREI 223
            + E S    ++      D D G +  ++Y +    A T F +  + G +   ++LDRE 
Sbjct: 9   VLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREE 67

Query: 224 KSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ 282
           K+ YTL  +A D          ++F I+                                
Sbjct: 68  KAEYTLTAQAVDFETNKPLEPPSEFIIK-------------------------------- 95

Query: 283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVSDWAND 339
           V D NDN+P F    Y   V E    G+ V  V  TDAD+   G +  + YS++      
Sbjct: 96  VQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QP 153

Query: 340 VFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVDLNDNPP 396
            FSI P++  I T    +D E    Y+ V+QA+D G     +S T T+   + D+NDNPP
Sbjct: 154 YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPP 213

Query: 397 LFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
            F     +  V E+V LGT +  V A D D G
Sbjct: 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG 245

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  184 bits (469), Expect = 6e-55
 Identities = 75/255 (29%), Positives = 114/255 (44%), Gaps = 46/255 (18%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+P F    Y   V E    G+ V  V  TDAD+ V G                
Sbjct: 96  VQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYG---------------- 139

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
                               ++ +L YSI+ G     F+I P    +   L ++DRE K 
Sbjct: 140 --------------------NSAKLVYSILEGQP--YFSIEPETAIIKTALPNMDREAKE 177

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAA 178
            Y +V+ A DM       LS TT +++ + DVNDN P+F  +    ++PE+  L T +  
Sbjct: 178 EYLVVIQAKDMGGHSG-GLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGR 236

Query: 179 LKAIDRDEGQNSYVEYSIINS-EATPFSL----GPVDGLLRVAQKLDREIKSNYTLEIKA 233
           +KA D+D G+N+   Y II+      F +       DG++R+ + LD E K +YTL+++A
Sbjct: 237 VKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEA 296

Query: 234 KDRGEPSKSSRTKFF 248
            +     + S    F
Sbjct: 297 ANIHIDPRFSSRGPF 311

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  114 bits (288), Expect = 6e-29
 Identities = 39/139 (28%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 290 SPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGI 349
           S V++     F + E       +     TD D G +  + Y +  D A  +F IN  +G 
Sbjct: 1   SWVWN---QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGD 56

Query: 350 FTLTAKLDYEDVHHYIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVY 408
                +LD E+   Y    QA D      +         V D+NDN P F   P +  V 
Sbjct: 57  IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVP 116

Query: 409 ENVTLGTGLASVHAVDLDS 427
           E   LGT + +V A D D 
Sbjct: 117 EMSILGTSVTNVTATDADD 135

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 47/156 (30%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           ++D NDN P F++ +Y F V ED+  G+ +G+V   D D G                   
Sbjct: 205 LTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIG------------------- 245

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTI----NPSNGTLSNLKHLDRE 116
                               +N +  Y I+ GD   +F I       +G +   K LD E
Sbjct: 246 --------------------ENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFE 285

Query: 117 TKSSYNLVVMATDMAKPPQKR----LSSTTQVSIVI 148
           TK SY L V A ++   P+         T  V IV+
Sbjct: 286 TKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  200 bits (511), Expect = 2e-62
 Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 45/248 (18%)

Query: 152 NDNAPEFITA---NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLG 207
            +  P F          I E++P+ + V  L A D D     +    +   EA+  F++ 
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVF---GVSGEEASRFFAVE 58

Query: 208 PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYS 267
           P  G++ + Q LDRE KS +T+E    D          K  I++ D NDN P F ++ YS
Sbjct: 59  PDTGVVWLRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYS 115

Query: 268 ASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV 327
             +PEN  VG  +  V+                                 TD D G  G 
Sbjct: 116 VRIPENTPVGTPIFIVN--------------------------------ATDPDLGAGGS 143

Query: 328 VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM-MSSTVTVYF 386
           V YS      +  F+I+   GI T+  +LDYE    Y   V A D  K   +S+   +  
Sbjct: 144 VLYSFQPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAI 201

Query: 387 NVVDLNDN 394
            + D+ D 
Sbjct: 202 IITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  198 bits (507), Expect = 5e-62
 Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)

Query: 5   NDNSPVFSEPVY--AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
            +  P F+   +     + ED P GS V Q+   D D   N  + + V  + A+  F++ 
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58

Query: 63  PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN 122
           P +G+  L                                        + LDRETKS + 
Sbjct: 59  PDTGVVWLR---------------------------------------QPLDRETKSEFT 79

Query: 123 LVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF-ITANETTIPENSPLNTVVAALKA 181
           +    +D           T +V+I + DVNDNAP F        IPEN+P+ T +  + A
Sbjct: 80  VEFSVSDHQGV------ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNA 133

Query: 182 IDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSK 241
            D D G    V YS        F++    G++ V Q+LD E+   Y L + A D+ +   
Sbjct: 134 TDPDLGAGGSVLYSFQPPSPF-FAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP 192

Query: 242 -SSRTKFFIRLLDENDNN 258
            S+     I + D  D +
Sbjct: 193 LSTLANLAIIITDMQDMD 210

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  146 bits (370), Expect = 8e-42
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 287 NDNSPVFSEPVY--AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
            +  P F+   +     + ED P GS V Q+   D D   N  + + V  + A+  F++ 
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58

Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPN 404
           P +G+  L   LD E    +       D        T  V   V D+NDN P F   P +
Sbjct: 59  PDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPYS 115

Query: 405 IPVYENVTLGTGLASVHAVDLDSG 428
           + + EN  +GT +  V+A D D G
Sbjct: 116 VRIPENTPVGTPIFIVNATDPDLG 139

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  123 bits (312), Expect = 2e-33
 Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 43/154 (27%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN+P F    Y+  + E+ P G+ +  V  TD D G  G V YS      +  F+
Sbjct: 99  VGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFA 156

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
           I+   GI T+                                        + LD E   +
Sbjct: 157 IDSARGIVTVI---------------------------------------QELDYEVTQA 177

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDN 154
           Y L V ATD  K     LS+   ++I+I D+ D 
Sbjct: 178 YQLTVNATDQDKTR--PLSTLANLAIIITDMQDM 209

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 392 NDNPPLF--DPMPPNIPVYENVTLGTGLASVHAVDLDSGKL 430
            +  P F        + + E+  +G+ +  + A D+D+  L
Sbjct: 2   VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPL 42

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  179 bits (456), Expect = 2e-54
 Identities = 63/242 (26%), Positives = 91/242 (37%), Gaps = 46/242 (19%)

Query: 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 216
              + PEN         L  I  +  + + V YSI            F +    G L+V 
Sbjct: 5   AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVT 63

Query: 217 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 276
           Q LDRE  + Y L   A      +     +  I + D+NDN P F  + +  SV E    
Sbjct: 64  QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123

Query: 277 GATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGVVTYSVV 333
           G +V++VS                                 TDAD+ V   N  + Y++V
Sbjct: 124 GTSVMKVS--------------------------------ATDADDDVNTYNAAIAYTIV 151

Query: 334 S----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNV 388
           S        ++F++N  +G I  LT+ LD E    Y  VVQA D     +S+T      V
Sbjct: 152 SQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211

Query: 389 VD 390
            D
Sbjct: 212 KD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  161 bits (409), Expect = 2e-47
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 49/249 (19%)

Query: 15  VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKL 74
           + A    E+   G     +    ++      V YS+    A+                  
Sbjct: 4   IAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADK----------------- 45

Query: 75  DYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP 134
                                 +F I    G L   + LDRE  + Y L   A       
Sbjct: 46  ------------------PPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA 87

Query: 135 QKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNS 190
              +    ++ I + D NDN PEF     E ++ E +   T V  + A D D+     N+
Sbjct: 88  ---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144

Query: 191 YVEYSIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSKSSR 244
            + Y+I++ +        F++    G++ V    LDRE    YTL ++A D      S+ 
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204

Query: 245 TKFFIRLLD 253
            K  I + D
Sbjct: 205 AKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  118 bits (299), Expect = 2e-31
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 297 VYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTL 352
           + A    E+   G     +    ++      V YS+    A+     VF I  ++G   +
Sbjct: 4   IAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62

Query: 353 TAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVT 412
           T  LD E +  YI    A  +    +   + +   V D NDN P F        V E   
Sbjct: 63  TQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV 122

Query: 413 LGTGLASVHAVDLDSG 428
            GT +  V A D D  
Sbjct: 123 PGTSVMKVSATDADDD 138

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  113 bits (285), Expect = 2e-29
 Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 44/155 (28%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V+D NDN P F++ V+   V E    G+ V +V  TDAD+ VN                 
Sbjct: 98  VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT---------------- 141

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLS-NLKHLDR 115
                                N  + Y+IVS D E     +FT+N   G +S     LDR
Sbjct: 142 --------------------YNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR 181

Query: 116 ETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           E+  +Y LVV A D+       LS+T +  I ++D
Sbjct: 182 ESYPTYTLVVQAADLQGEG---LSTTAKAVITVKD 213

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  176 bits (449), Expect = 3e-53
 Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 41/239 (17%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-NSEATPFSLGPVDGLLRVAQKLDREI 223
            I E +  + V+      D D G +  ++Y +      T F +    G +   + LDRE 
Sbjct: 10  VIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREE 68

Query: 224 KSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQV 283
           ++ YTL  +A DR           FI                               ++V
Sbjct: 69  RAQYTLMAQAVDRDTNRPLEPPSEFI-------------------------------VKV 97

Query: 284 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVSDWANDV 340
            D NDN P F   +Y  +V E    G+ V QV  +DAD+   G +  + YS++       
Sbjct: 98  QDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG--QPY 155

Query: 341 FSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTG--KPMMSSTVTVYFNVVDLNDNPP 396
           FS+  Q+G I T    +D E    Y  V+QA+D G     +S T  V   + D   +  
Sbjct: 156 FSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  173 bits (440), Expect = 6e-52
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 50/251 (19%)

Query: 16  YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 75
             F + E       +     +D D G                                  
Sbjct: 7   QFFVIEEYTGPDPVLVGRLHSDIDSG---------------------------------- 32

Query: 76  YEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ 135
                 +G ++Y +       IF I+  +G +   K LDRE ++ Y L+  A D      
Sbjct: 33  ------DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRP 86

Query: 136 KRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE---GQNSY 191
             L   ++  + ++D+NDN PEF+       +PE S + T V  + A D D+   G ++ 
Sbjct: 87  --LEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAK 144

Query: 192 VEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRG--EPSKSSRTKFF 248
           + YSI+  +   FS+    G++R A   +DRE K  Y + I+AKD G      S  TK  
Sbjct: 145 LVYSILEGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVT 203

Query: 249 IRLLDENDNNP 259
           I L D+  ++ 
Sbjct: 204 ITLTDDYKDDD 214

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  126 bits (318), Expect = 3e-34
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 40/158 (25%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P F   +Y  +V E    G+ V QV  +DAD+   G                
Sbjct: 97  VQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYG---------------- 140

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
                               ++ +L YSI+ G     F++    G +   L ++DRE K 
Sbjct: 141 --------------------NSAKLVYSILEGQP--YFSVEAQTGIIRTALPNMDREAKE 178

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE 157
            Y++V+ A DM       LS TT+V+I + D   +  +
Sbjct: 179 EYHVVIQAKDMGGHMGG-LSGTTKVTITLTDDYKDDDK 215

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  113 bits (284), Expect = 2e-29
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 2/132 (1%)

Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
             F + E       +     +D D G +G + Y +  + A  +F I+ +SG    T  LD
Sbjct: 7   QFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLD 65

Query: 358 YEDVHHYIFVVQAQDTGKPM-MSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG 416
            E+   Y  + QA D      +         V D+NDNPP F     +  V E   +GT 
Sbjct: 66  REERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTS 125

Query: 417 LASVHAVDLDSG 428
           +  V A D D  
Sbjct: 126 VIQVTASDADDP 137

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  172 bits (438), Expect = 2e-51
 Identities = 44/274 (16%), Positives = 71/274 (25%), Gaps = 53/274 (19%)

Query: 11  FSEPVYAFDVLEDLPRGSRVGQVFTT--DADEGVNGVVTYSVVSDW-----ANDVFSINP 63
           FS   Y   +  D   G+ +  V       +E  +  +   +   +      N+   I  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 64  QSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
            +G+  L   LD+                                    L    +    L
Sbjct: 63  DTGLLYLQRSLDHSSWE-------------------------------KLSVRNRGFPLL 91

Query: 124 VVMATDMAKPPQKR---LSSTTQVSIVIRDVNDNAPEFITAN-----------ETTIPEN 169
            V       P   R           +     N + P   +                I EN
Sbjct: 92  TVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIREN 151

Query: 170 SPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTL 229
            P  T         +       V Y ++  E  PF   P    +     LDRE +  Y L
Sbjct: 152 RPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYEL 211

Query: 230 EIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFD 262
                   G   +     F + + DE+D+ P F+
Sbjct: 212 VAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  164 bits (416), Expect = 3e-48
 Identities = 36/260 (13%), Positives = 64/260 (24%), Gaps = 46/260 (17%)

Query: 163 ETTIPENSPLNTVVAALKAI--DRDEGQNSYVEYSIINSEATP------FSLGPVDGLLR 214
              +  +    T +  + A+    +E  +  +   +  +  T         +    GLL 
Sbjct: 9   WEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLY 68

Query: 215 VAQKLDREIKSNYTLE--------------IKAKDRGEPSKSSRTKFFIRLLDENDNNPI 260
           + + LD       ++               +      E          +     N + P 
Sbjct: 69  LQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPA 128

Query: 261 FDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA 320
                                  S        F E   +F + E+ P G+          
Sbjct: 129 C----------------------SSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQ 166

Query: 321 DEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD-TGKPMMS 379
                  V Y ++       F   P S   +    LD E    Y  V       G     
Sbjct: 167 FLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEV 225

Query: 380 STVTVYFNVVDLNDNPPLFD 399
             V     V D +D+ P F+
Sbjct: 226 VMVPFPVTVYDEDDSAPEFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  113 bits (285), Expect = 3e-29
 Identities = 29/168 (17%), Positives = 46/168 (27%), Gaps = 52/168 (30%)

Query: 1   VSDTNDNSPV----------FSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSV 50
            S  N + P           F E   +F + E+ P G+                 V Y +
Sbjct: 119 FSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRL 178

Query: 51  VSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL 110
           +                                          +   F   P +  +S  
Sbjct: 179 L----------------------------------------EGEGLPFRSAPDSLEVSTR 198

Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF 158
             LDRE +  Y LV + T  A   +          + + D +D+APEF
Sbjct: 199 WALDREQREKYELVAVCTVHAGARE--EVVMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 96.9 bits (241), Expect = 4e-23
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 31/167 (18%)

Query: 293 FSEPVYAFDVLEDLPRGSRVGQVFTT--DADEGVNGVVTYSVVSDW-----ANDVFSINP 345
           FS   Y   +  D   G+ +  V       +E  +  +   +   +      N+   I  
Sbjct: 3   FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62

Query: 346 QSGIFTLTAKLDYEDVHHYIF--------------VVQAQDTGKPMMSSTVTVYFNVVDL 391
            +G+  L   LD+                       +      +                
Sbjct: 63  DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122

Query: 392 NDNPPLFDPMPP----------NIPVYENVTLGTGLASVHAVDLDSG 428
           N + P    + P          +  + EN   GT             
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLC 169

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  171 bits (435), Expect = 3e-51
 Identities = 63/244 (25%), Positives = 98/244 (40%), Gaps = 48/244 (19%)

Query: 162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSII-----NSEATPFSLGPVDGLLRVA 216
               +PENS        L  I  D  +N  + YS+            F + P+ G L V 
Sbjct: 5   PPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT 63

Query: 217 QKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISV 276
           + LDRE+ + + L   A D       +     I ++D NDN P F  + ++ SVPE    
Sbjct: 64  KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123

Query: 277 GATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS 334
           G  V+ V+                                  DAD+   +NG++ Y ++S
Sbjct: 124 GTYVMTVT--------------------------------AIDADDPNALNGMLRYRILS 151

Query: 335 ----DWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM---MSSTVTVYF 386
                 + ++F+IN ++G I T+ A LD E V  Y  ++QA D        +S+T T   
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 211

Query: 387 NVVD 390
            V D
Sbjct: 212 TVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  153 bits (388), Expect = 2e-44
 Identities = 59/248 (23%), Positives = 92/248 (37%), Gaps = 51/248 (20%)

Query: 18  FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
            ++ E+   G    ++    +D   N  + YSV    A+                     
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQ-------------------- 45

Query: 78  DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
                              IF INP +G LS  K LDRE  + ++L   A D+       
Sbjct: 46  ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 87

Query: 138 LSSTTQVSIVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDE--GQNSYVEY 194
           + +   + I + D+NDN PEF+      ++PE S   T V  + AID D+    N  + Y
Sbjct: 88  VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147

Query: 195 SIINSEATP-----FSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEPSK---SSRT 245
            I++   +      F++    G +      LDRE    YTL I+A D         S+  
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207

Query: 246 KFFIRLLD 253
              I + D
Sbjct: 208 TAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  118 bits (297), Expect = 3e-31
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAK 355
            ++ E+   G    ++    +D   N  + YSV    A+     +F INP SG  ++T  
Sbjct: 7   INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65

Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGT 415
           LD E +  +     A D     + + + +  NV+D+NDN P F     N  V E    GT
Sbjct: 66  LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125

Query: 416 GLASVHAVDLD 426
            + +V A+D D
Sbjct: 126 YVMTVTAIDAD 136

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  110 bits (277), Expect = 2e-28
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 44/156 (28%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----DW 54
           V D NDN P F   V+   V E    G+ V  V   DAD+   +NG++ Y ++S      
Sbjct: 98  VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTP 157

Query: 55  ANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD 114
           + ++F+IN ++G                             +I T+            LD
Sbjct: 158 SPNMFTINNETG-----------------------------DIITVAAG---------LD 179

Query: 115 RETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           RE    Y L++ ATDM   P   LS+T    I + D
Sbjct: 180 REKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  165 bits (421), Expect = 3e-49
 Identities = 60/208 (28%), Positives = 85/208 (40%), Gaps = 12/208 (5%)

Query: 53  DWANDVFSI--NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL 110
           DW  +   I     S +     KL       N    Y I       IF +   +G +   
Sbjct: 1   DWIWNRMHIREEIDSPLPHHVGKLT--SSVGNKNAMYIIEGESANTIFKVQGYDGDIYAF 58

Query: 111 KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN-ETTIPEN 169
           + LDRE K+ Y L     D        L   ++  I + D+NDNAP F+      ++PE 
Sbjct: 59  ERLDREKKAEYELTAHIIDRRNNRS--LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEM 116

Query: 170 SPLNTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN 226
           S L T V  + A D D+     ++ V Y II      F++     +      LDRE +S 
Sbjct: 117 SRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN-EYFTVDDSGVIFTARADLDRESQSA 175

Query: 227 YTLEIKAKDR-GEPSKSSRTKFFIRLLD 253
           Y + +KAKD  G   +SS     IRL D
Sbjct: 176 YEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  162 bits (413), Expect = 3e-48
 Identities = 67/237 (28%), Positives = 94/237 (39%), Gaps = 46/237 (19%)

Query: 162 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQK 218
           N   I E    PL   V  L +       N    Y I    A T F +   DG +   ++
Sbjct: 5   NRMHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFER 60

Query: 219 LDREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVG 277
           LDRE K+ Y L     DR    S    +KF I+                           
Sbjct: 61  LDREKKAEYELTAHIIDRRNNRSLEPPSKFIIK--------------------------- 93

Query: 278 ATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSVVS 334
                VSD NDN+P+F + ++   V E    G+ V +V   DAD+     +  VTY ++ 
Sbjct: 94  -----VSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIK 148

Query: 335 DWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD-TGKPMMSSTVTVYFNVVD 390
              N+ F+++    IFT  A LD E    Y  +V+A+D  G    SST TV   + D
Sbjct: 149 G--NEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  111 bits (280), Expect = 6e-29
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 40/150 (26%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           VSD NDN+P+F + ++   V E    G+ V +V   DAD+                    
Sbjct: 94  VSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVA---------------- 137

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                +  + Y I+ G++   FT++ S    +    LDRE++S+
Sbjct: 138 --------------------GHATVTYQIIKGNE--YFTVDDSGVIFTARADLDRESQSA 175

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           Y ++V A D         SST  V I + D
Sbjct: 176 YEIIVKAKDALGLTG--ESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  107 bits (270), Expect = 2e-27
 Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
            D P    VG++ ++      N    Y +  + AN +F +    G      +LD E    
Sbjct: 13  IDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE 68

Query: 364 YIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHA 422
           Y       D      +         V D+NDN P+F     N  V E   LGT +  V A
Sbjct: 69  YELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTA 128

Query: 423 VDLDS 427
            D D 
Sbjct: 129 EDADD 133

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  165 bits (419), Expect = 6e-49
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 43/241 (17%)

Query: 158 FITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVA 216
           ++      + E +  +         D+D G  S ++Y +    A   F +    G ++  
Sbjct: 2   WMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGS-LKYILSGDGAGDLFIINENTGDIQAT 60

Query: 217 QKLDREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENIS 275
           ++LDRE K  Y L  +A +R         ++F I+                         
Sbjct: 61  KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIK------------------------- 95

Query: 276 VGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE---GVNGVVTYSV 332
                  + D NDN P+F++ VY   V E    G+ V QV  TDAD+   G +  V YS+
Sbjct: 96  -------IHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148

Query: 333 VSDWANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVV 389
           +       FS+  ++G I T    +D E+   Y  V+QA+D G  M  +S T TV   + 
Sbjct: 149 LQ--GQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206

Query: 390 D 390
           D
Sbjct: 207 D 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  162 bits (413), Expect = 4e-48
 Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 50/245 (20%)

Query: 16  YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 75
             F + E      +      +D D G +G + Y +  D A D+F IN  +G    T    
Sbjct: 6   QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQAT---- 60

Query: 76  YEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQ 135
                                              K LDRE K  Y L   A +      
Sbjct: 61  -----------------------------------KRLDREEKPVYILRAQAVNRRTGRP 85

Query: 136 KRLSSTTQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE---GQNSY 191
             +   ++  I I D+NDN P F       T+PE + + T V  + A D D+   G ++ 
Sbjct: 86  --VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAK 143

Query: 192 VEYSIINSEATPFSLGPVDGLLRVAQK-LDREIKSNYTLEIKAKDRGEP--SKSSRTKFF 248
           V YSI+  +   FS+    G+++ A   +DRE +  Y + I+AKD G      S  T   
Sbjct: 144 VVYSILQGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVN 202

Query: 249 IRLLD 253
           I L D
Sbjct: 203 ITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  118 bits (297), Expect = 3e-31
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 298 YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
             F + E      +      +D D G +G + Y +  D A D+F IN  +G    T +LD
Sbjct: 6   QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLD 64

Query: 358 YEDVHHYIFVVQAQDTG-KPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTG 416
            E+   YI   QA +      +         + D+NDN P+F        V E   +GT 
Sbjct: 65  REEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTF 124

Query: 417 LASVHAVDLDS 427
           +  V A D D 
Sbjct: 125 VVQVTATDADD 135

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  112 bits (281), Expect = 5e-29
 Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 40/151 (26%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           + D NDN P+F++ VY   V E    G+ V QV  TDAD+   G                
Sbjct: 96  IHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYG---------------- 139

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLS-NLKHLDRETKS 119
                               ++ ++ YSI+ G     F++    G +   L ++DRE + 
Sbjct: 140 --------------------NSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENRE 177

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
            Y +V+ A DM       LS TT V+I + D
Sbjct: 178 QYQVVIQAKDMGGQMGG-LSGTTTVNITLTD 207

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  156 bits (395), Expect = 2e-45
 Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 48/242 (19%)

Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
            IPEN   P    V  +   DR EG    +    ++ +    F +    G + V + LDR
Sbjct: 9   LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68

Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVL 281
           E  + Y L ++  D    +        + ++D+NDN PIF    Y   V E    G TV+
Sbjct: 69  ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM 128

Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVS----D 335
           +++                                  DAD+    N ++ Y++       
Sbjct: 129 RMT--------------------------------AFDADDPATDNALLRYNIRQQTPDK 156

Query: 336 WANDVFSINPQSG-IFTLTAK--LDYEDVHH--YIFVVQAQDTGKPM--MSSTVTVYFNV 388
            + ++F I+P+ G I T+ +   LD E + +  Y  +++AQD       ++ T T    +
Sbjct: 157 PSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVI 216

Query: 389 VD 390
            D
Sbjct: 217 DD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  144 bits (366), Expect = 4e-41
 Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 57/247 (23%)

Query: 22  EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
           +  P    VG+V  +D  EG    +T                                  
Sbjct: 14  QRQPFPRDVGKVVDSDRPEGSKFRLTGK-------------------------------- 41

Query: 82  NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
                   V  D +  F IN + G++S  + LDRET ++Y L V  TD +      L   
Sbjct: 42  -------GVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91

Query: 142 TQVSIVIRDVNDNAPEFI-TANETTIPENSPLNTVVAALKAIDRDE--GQNSYVEYSIIN 198
             + +++ D NDN P F        + E SP  T V  + A D D+    N+ + Y+I  
Sbjct: 92  VPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQ 151

Query: 199 SEATP-----FSLGPVDGLLRVAQ---KLDREIKSN--YTLEIKAKDRG--EPSKSSRTK 246
                     F + P  G +        LDRE   N  Y L I+A+D    +   +    
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTAT 211

Query: 247 FFIRLLD 253
             I + D
Sbjct: 212 ATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  117 bits (294), Expect = 9e-31
 Identities = 36/125 (28%), Positives = 51/125 (40%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           +  P    VG+V  +D  EG    +T   V       F IN  +G  ++T  LD E +  
Sbjct: 14  QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73

Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAV 423
           Y   V+  D     +   V +   V+D NDN P+F   P    V E    GT +  + A 
Sbjct: 74  YQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAF 133

Query: 424 DLDSG 428
           D D  
Sbjct: 134 DADDP 138

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 98.2 bits (245), Expect = 7e-24
 Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 47/159 (29%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
           V D NDN P+F E  Y   V+E  P G+ V ++   DAD+                    
Sbjct: 98  VIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPAT----------------- 140

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNG---TLSNLKHL 113
                               DN  L Y+I     +     +F I+P  G   T+ +   L
Sbjct: 141 --------------------DNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALL 180

Query: 114 DRET--KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           DRET     Y L++ A DMA      L+ T   +IVI D
Sbjct: 181 DRETLENPKYELIIEAQDMAGLD-VGLTGTATATIVIDD 218

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  138 bits (351), Expect = 3e-40
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWAND 339
             S  NDNSP F + VY  D+ E+   G+ + Q+   D D GVNG + Y     ++    
Sbjct: 3   SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRR 62

Query: 340 VFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
           +  ++  SG  ++  ++D E+V+   F V A+D G+P  +   TV  N+ D NDN P
Sbjct: 63  LLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  117 bits (295), Expect = 5e-32
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 40/156 (25%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            S  NDNSP F + VY  D+ E+   G+ + Q+   D D GVNG + Y            
Sbjct: 4   GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYV----------- 52

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                     +   +     +  ++ ++G LS L  +DRE  + 
Sbjct: 53  --------------------------FGAATESVRRLLRLDETSGWLSVLHRIDREEVNQ 86

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP 156
               VMA D  +PP    +    V + I+D NDN P
Sbjct: 87  LRFTVMARDRGQPP---KTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score =  113 bits (285), Expect = 1e-30
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 148 IRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE---ATP 203
               NDN+P F  +  E  + ENS   T +  L+A D D G N  +EY    +       
Sbjct: 4   GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRL 63

Query: 204 FSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
             L    G L V  ++DRE  +     + A+DRG+P K+ +    + + DENDN P
Sbjct: 64  LRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 387 NVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
           +    NDN P F+       + EN   GT +  + A DLD G
Sbjct: 3   SGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVG 44

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score =  122 bits (309), Expect = 4e-34
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 282 QVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYS---VVSDWAN 338
             S  NDN PVF E      + E+ P G+ V Q+  TDAD G N  + Y     V+    
Sbjct: 3   SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK 62

Query: 339 DVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN 392
            +F++N  +G+ T+   LD E+   +   V A D       +TVT+  NV D+N
Sbjct: 63  RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTI--NVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score =  101 bits (255), Expect = 2e-26
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 41/152 (26%)

Query: 1   VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFS 60
            S  NDN PVF E      + E+ P G+ V Q+  TDAD G N  + Y          F 
Sbjct: 4   GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYI---------FG 54

Query: 61  INPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSS 120
                                      + V+   + +F +N + G ++  + LDRE  + 
Sbjct: 55  ---------------------------AQVAPATKRLFALNNTTGLITVQRSLDREETAI 87

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRDVN 152
           + + V+A+D +  P     +   V+I + DVN
Sbjct: 88  HKVTVLASDGSSTP-----ARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 99.8 bits (250), Expect = 1e-25
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 146 IVIRDVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN----SE 200
                 NDN P F     E  IPEN+P+ T V  L A D D G N+ + Y        + 
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 201 ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDEN 255
              F+L    GL+ V + LDRE  + + + + A D       +R    I + D N
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSST--PARATVTINVTDVN 114

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 387 NVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG 428
           +    NDN P+F      + + EN  +GT +  +HA D D G
Sbjct: 3   SGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG 44

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score =  101 bits (254), Expect = 2e-26
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAK 355
            ++ E+   G    ++    +    N  + YSV    A+     +F INP SG  ++T  
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67

Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
           LD E +  +     A D     + + + +  NV+D+NDN P F
Sbjct: 68  LDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 97.0 bits (242), Expect = 1e-24
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 155 APEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPV 209
             +++      +PENS        L  I     +N  + YS+    A       F + P+
Sbjct: 1   GSDWVI-PPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPI 58

Query: 210 DGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 261
            G L V + LDRE+ + + L   A D       +     I ++D NDN P F
Sbjct: 59  SGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 39/141 (27%)

Query: 18  FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
            ++ E+   G    ++    +    N  + YSV    A+                     
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQ-------------------- 47

Query: 78  DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
                              IF INP +G LS  K LDRE  + ++L   A D+       
Sbjct: 48  ---------------PPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 89

Query: 138 LSSTTQVSIVIRDVNDNAPEF 158
           + +   + I + D+NDN PEF
Sbjct: 90  VENPIDIVINVIDMNDNRPEF 110

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQSGIFTLTAKLDYE 359
           EDL + + + ++  +D  E     +TY        +    +F  N  +G   +T+ LD E
Sbjct: 23  EDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81

Query: 360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
           +   ++    A D     +   + +   V+D+NDN P+F
Sbjct: 82  ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 39/137 (28%)

Query: 22  EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
           EDL + + + ++  +D  E     +TY                                 
Sbjct: 23  EDLSKKNPIAKI-HSDLAEERGLKITYK-------------------------------- 49

Query: 82  NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
                   ++     IF  N   G L+    LDRE    + L   A D        +   
Sbjct: 50  ---YTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN---VEKP 103

Query: 142 TQVSIVIRDVNDNAPEF 158
            ++ I + D+NDN P F
Sbjct: 104 LELRIKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQ 217
            + E         +A + + D  E +   + Y       T      F      G L V  
Sbjct: 18  ALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS 76

Query: 218 KLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIF 261
            LDRE    + L   A D    +     +  I++LD NDN P+F
Sbjct: 77  ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 23/87 (26%), Positives = 35/87 (40%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           +  P    VG+V  +D  EG    +T   V       F IN  +G  ++T  LD E +  
Sbjct: 14  QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73

Query: 364 YIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           Y   V+  D     +   V +   V+D
Sbjct: 74  YQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
            IPEN   P    V  +   DR EG    +    ++ +    F +    G + V + LDR
Sbjct: 9   LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68

Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           E  + Y L ++  D    +        + ++D
Sbjct: 69  ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 42/129 (32%)

Query: 22  EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD 81
           +  P    VG+V  +D  EG    +T                                  
Sbjct: 14  QRQPFPRDVGKVVDSDRPEGSKFRLTGK-------------------------------- 41

Query: 82  NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSST 141
                   V  D +  F IN + G++S  + LDRET ++Y L V  TD +      L   
Sbjct: 42  -------GVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGP 91

Query: 142 TQVSIVIRD 150
             + +++ D
Sbjct: 92  VPLEVIVID 100

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAND----VFSINPQ 346
           P+ S  +      E+   G     +    +++   G V YS+    A+     VF I  +
Sbjct: 2   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 347 SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           +G   +T  LD E +  Y     A  +    +   + +   V D
Sbjct: 61  TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 155 APEFI-TANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGP 208
            P         + PEN         L  I  ++ +   V YSI    A       F +  
Sbjct: 1   GPLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIER 59

Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 254
             G L+V + LDRE  + YTL   A      +     +  I + D+
Sbjct: 60  ETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 105

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 39/142 (27%)

Query: 9   PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
           P+ S  +      E+   G     +    +++   G V YS+    A+            
Sbjct: 2   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGAD------------ 48

Query: 69  TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
                                       +F I    G L   + LDRE  ++Y L   A 
Sbjct: 49  -----------------------TPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 85

Query: 129 DMAKPPQKRLSSTTQVSIVIRD 150
                    +    ++ I + D
Sbjct: 86  SSNGNA---VEDPMEILITVTD 104

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 300 FDVLE--DLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLD 357
             + E   +P    VG+V  +D   G    +    V      +F IN  SG  ++T  LD
Sbjct: 7   ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66

Query: 358 YEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
            E +  Y   V+  D     +   V +   V+D
Sbjct: 67  REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 77.4 bits (191), Expect = 8e-18
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
           +IPEN   P   +V  +   DR  G    +    ++ E    F +    G + V + LDR
Sbjct: 8   SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67

Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           E   +Y L+++  D    +        I ++D
Sbjct: 68  EAIPSYQLQVETTDENGKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 77  EDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQK 136
                  +L    V  + + IF IN ++G +S  K LDRE   SY L V  TD       
Sbjct: 29  RIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDENGKT-- 86

Query: 137 RLSSTTQVSIVIRD 150
            +     + I++ D
Sbjct: 87  -IEGPVDLEILVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 83.2 bits (206), Expect = 8e-20
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 294 SEPVYAFDVLE--DLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFT 351
           S       + E    P    VG+V  ++  EG    ++   V      +F IN  SG  +
Sbjct: 1   SILATPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVS 60

Query: 352 LTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           +T  LD E + +Y   V+  D    ++   V +  +V+D
Sbjct: 61  VTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 165 TIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-PFSLGPVDGLLRVAQKLDR 221
            IPEN   P    V  +   +  EG    +    ++ +    F +  + G + V + LDR
Sbjct: 8   LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67

Query: 222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           E  +NY LE++  D          +  I ++D
Sbjct: 68  EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 70  LTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATD 129
                         RL    V  D + IF IN  +G +S  + LDRE  ++Y L V  TD
Sbjct: 22  GKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81

Query: 130 MAKPPQKRLSSTTQVSIVIRD 150
           ++      +    ++ I + D
Sbjct: 82  LSGKI---IDGPVRLDISVID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 77.4 bits (191), Expect = 8e-18
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           E             +D D G +G + Y +  + A  VF+I+  +G      +LD E+   
Sbjct: 13  EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71

Query: 364 YIFVVQAQDTG-KPMMSSTVTVYFNVVD 390
           Y    QA D      M         + D
Sbjct: 72  YTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 71.7 bits (176), Expect = 8e-16
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 65  SGIFTLTAKLDYEDV-SDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
           +G   L     + D+   +G ++Y +       +FTI+ + G +  ++ LDRE +S Y L
Sbjct: 15  TGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTL 74

Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRD 150
              A D        +   ++  I I+D
Sbjct: 75  RAQALDRRTGRP--MEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 162 NETTIPENS-PLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKL 219
           N+  + E     + +       D D G +  ++Y +    A   F++    G +   Q+L
Sbjct: 6   NQFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRL 64

Query: 220 DREIKSNYTLEIKAKDRG-EPSKSSRTKFFIRLLD 253
           DRE +S YTL  +A DR         ++F I++ D
Sbjct: 65  DREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHH 363
           E       +     TD D G +  + Y +  D A  +F IN  +G      +LD E+   
Sbjct: 12  EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70

Query: 364 YIFVVQAQDT-GKPMMSSTVTVYFNVVD 390
           Y    QA D      +         V D
Sbjct: 71  YTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 80  SDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLS 139
             + +++Y +       IF IN   G +  +K LDRE K+ Y L   A D        L 
Sbjct: 30  PGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK--PLE 87

Query: 140 STTQVSIVIRD 150
             ++  I ++D
Sbjct: 88  PPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 162 NETTIPEN-SPLNTVVAALKAIDRDEGQNSYVEYSIINSEA-TPFSLGPVDGLLRVAQKL 219
           N+  + E  S    ++      D D G    ++Y +    A T F +  + G +   ++L
Sbjct: 5   NQMFVLEEFSGPEPILVGRLHTDLDPGSKK-IKYILSGDGAGTIFQINDITGDIHAIKRL 63

Query: 220 DREIKSNYTLEIKAKDR-GEPSKSSRTKFFIRLLD 253
           DRE K+ YTL  +A D          ++F I++ D
Sbjct: 64  DREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 58/425 (13%), Positives = 131/425 (30%), Gaps = 121/425 (28%)

Query: 56  NDVFSINPQSGIFTLTAKLDYEDVSDNGR-------LEYSIVSGDDEE----IFTINPSN 104
            D+ S+   +         D +DV D  +       +++ I+S D       +F    S 
Sbjct: 19  KDILSVFEDA----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 105 GTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANET 164
                 K ++   + +Y  + M+    +  Q  + +   +    R  NDN   F   N  
Sbjct: 75  QEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYN-- 130

Query: 165 TIPENSPLNTVVAALK---------------------AID--RDEGQNSYVEYSI----I 197
            +    P   +  AL                      A+D          +++ I    +
Sbjct: 131 -VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 198 NSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDN 257
            +  +P      + +L + QKL  +I  N+T             SS  K  I  +     
Sbjct: 190 KNCNSP------ETVLEMLQKLLYQIDPNWT--------SRSDHSSNIKLRIHSIQAELR 235

Query: 258 NPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT 317
             +  SK Y             +L + +  +     ++   AF++        ++  + T
Sbjct: 236 R-LLKSKPYENC----------LLVLLNVQN-----AKAWNAFNL------SCKI--LLT 271

Query: 318 T-DAD--EGVNGVVTYSVVSDWANDVF-------------------------SINPQSGI 349
           T      + ++   T  +  D  +                            + NP+   
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--R 329

Query: 350 FTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPM---PPNIP 406
            ++ A+   + +  +      +      +++ +    NV++  +   +FD +   PP+  
Sbjct: 330 LSIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 407 VYENV 411
           +   +
Sbjct: 387 IPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 48/373 (12%), Positives = 110/373 (29%), Gaps = 124/373 (33%)

Query: 6   DNSPVFSEPVY-AFDVLEDLPRGSRVGQVFTT-DAD--EGVNGVVTYSVVSDWANDVFSI 61
            N  V +   + AF++        ++  + TT      + ++   T  +  D  +   + 
Sbjct: 251 LN--VQNAKAWNAFNL------SCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 62  NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINP------------SNGTLSN 109
           +    +         +D+                E+ T NP               T  N
Sbjct: 301 DEVKSLLLKYLDCRPQDLP--------------REVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 110 LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPEN 169
            KH++ +  +   ++  + ++ +P + R     ++S+     +             IP  
Sbjct: 347 WKHVNCDKLT--TIIESSLNVLEPAEYR-KMFDRLSVFPPSAH-------------IPTI 390

Query: 170 SPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLD------REI 223
             L+ +   +   D     N   +YS++  +    ++      L +  KL+      R I
Sbjct: 391 L-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 224 KSNYTLE------------------------IKAKDRGEPSKSSRTKF----FIR----- 250
             +Y +                         +K  +  E     R  F    F+      
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 251 --------------LLDEN-------DNNPIFDS-----KSYSASVPENI--SVGATVLQ 282
                         L           DN+P ++        +   + EN+  S    +L+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 283 VSDTNDNSPVFSE 295
           ++   ++  +F E
Sbjct: 570 IALMAEDEAIFEE 582

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 89  IVSGDDEEIFTINPSNGTLSNLKHLDRE------TKSSYNLVVMATDMAKPPQKRLSSTT 142
           I+S  ++++  +   +G L   + LDRE           +  V+      P Q       
Sbjct: 48  ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS---PVQ-----FI 99

Query: 143 QVSIVIRDVNDNAPEFITANETTI 166
           Q  I ++DVND+APEF+  +E+  
Sbjct: 100 QGEIQLQDVNDHAPEFME-DESGP 122

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 18/107 (16%)

Query: 302 VLEDLPRGSRVGQVFTTDADEGVNGVVTYS--VVSDWANDVFSINPQSGIFTLTAKLDYE 359
           VLE+  RGS VG +   D    +  ++T    ++S     +  +  +SG   L  KLD E
Sbjct: 17  VLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDRE 75

Query: 360 D--------VHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF 398
           +        + H+  +++      P+      +   + D+ND+ P F
Sbjct: 76  ELCGSTNPCILHFQVLLK-----SPVQFIQGEI--QLQDVNDHAPEF 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.97
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.95
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.93
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.92
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.9
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.88
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.86
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.85
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.82
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.78
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.77
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.77
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.74
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.73
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.73
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.73
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.72
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.72
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.7
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.69
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.68
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.67
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.67
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.49
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.44
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	95.75
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	94.37
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	94.12
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	93.67
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	92.69
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	92.13
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	89.7
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	87.12
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	87.01
2kpn_A	103	Bacillolysin; solution structure, BIG_3 domain, PF	85.5
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	84.99

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.2e-69  Score=577.38  Aligned_cols=424  Identities=28%  Similarity=0.424  Sum_probs=319.5

Q ss_pred             CCcCCCCCCccCCCeEEEEEe-cCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVL-EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV   79 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~-E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~   79 (442)
                      |.|+|||+|.|.+..|.++|+ |+.++|+.|+++.|+|+|.  ++.++|++.    ..+|+|++ +|.|++++.||++..
T Consensus        27 ~~d~ndn~P~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D~--n~~i~Y~~~----~~~F~Id~-~G~i~~~~~Ld~e~~   99 (880)
T 1q55_A           27 NADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT--RKHGLYDVG----DSRFRVLP-DGTVLVKRHVKLHKD   99 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCccCCCeEEEEechhhCCCCCEEEEEEEEeCCC--CceEEEEeC----CCCEEECC-CceEEECCccccccc
Confidence            579999999999999999999 9999999999999999993  778999984    35999998 799998887776531


Q ss_pred             c-------------------------------------------------------------------------------
Q psy6838          80 S-------------------------------------------------------------------------------   80 (442)
Q Consensus        80 ~-------------------------------------------------------------------------------   80 (442)
                      -                                                                               
T Consensus       100 ~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~~~~v~~v  179 (880)
T 1q55_A          100 TKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI  179 (880)
T ss_dssp             --------------------------------------------------------CCCCCCEEEESSCCSSSCEEEEEC
T ss_pred             eEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCCCeEEEEE
Confidence            0                                                                               


Q ss_pred             -----CCCcEEEEEEeCCC----CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEec
Q psy6838          81 -----DNGRLEYSIVSGDD----EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV  151 (442)
Q Consensus        81 -----~~~~i~y~i~~~~~----~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dv  151 (442)
                           .++.++|+|.+++.    .++|.|++.+|.|++.++||||+...|.|+|+|+|.++++   ++.+++|.|+|.|+
T Consensus       180 ~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~---~~~~~~v~I~V~Dv  256 (880)
T 1q55_A          180 KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQ  256 (880)
T ss_dssp             CCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCB---CSCCEEEEEEEECC
T ss_pred             eeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccccCccEEEEEEEECCCCc---eeeeEEEEEEEEec
Confidence                 13457899987653    3689999999999999999999999999999999998764   57789999999999


Q ss_pred             cCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCc
Q psy6838         152 NDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDR  221 (442)
Q Consensus       152 Nd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~  221 (442)
                      |||+|.|... |.++|+|++++|+.|+++.|+|+|.+   .|+.++|+|.++.     .+.|.|++.+|.|++. +.|||
T Consensus       257 NDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~LDr  336 (880)
T 1q55_A          257 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR  336 (880)
T ss_dssp             SCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCT
T ss_pred             CCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecccCCH
Confidence            9999999977 89999999999999999999999998   6889999998765     3689999999999985 78999


Q ss_pred             ccccEEEEEEEEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEE-------------------
Q psy6838         222 EIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQ-------------------  282 (442)
Q Consensus       222 e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~-------------------  282 (442)
                      |....|.|.|+|+|+|+++++++++|+|+|.|+|||+|.|....|.+.|+|+ ++|+.+++                   
T Consensus       337 E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ys  415 (880)
T 1q55_A          337 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYK  415 (880)
T ss_dssp             TTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECC
T ss_pred             HHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEE
Confidence            9999999999999999888999999999999999999999999999999999 77766543                   


Q ss_pred             --------------------------------------------------------------EeecCCCCCccCCcceeE
Q psy6838         283 --------------------------------------------------------------VSDTNDNSPVFSEPVYAF  300 (442)
Q Consensus       283 --------------------------------------------------------------v~~~n~~~p~~~~~~~~~  300 (442)
                                                                                    |.++|+ +|.|....|.+
T Consensus       416 i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~  494 (880)
T 1q55_A          416 IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRV  494 (880)
T ss_dssp             BSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECC
T ss_pred             EecCCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEE
Confidence                                                                          556788 99999999999


Q ss_pred             EEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCC
Q psy6838         301 DVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKP  376 (442)
Q Consensus       301 ~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~  376 (442)
                      .|.|+.++|+.|+++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||..    ..|+|+|.|+|+|.|
T Consensus       495 ~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~-~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p  573 (880)
T 1q55_A          495 DVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS  573 (880)
T ss_dssp             CBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSS
T ss_pred             EEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECC-CCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEECCCC
Confidence            9999999999999999999999999999999984 45789999999999999999999997    899999999999999


Q ss_pred             CceEEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCCCC
Q psy6838         377 MMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFDLL  442 (442)
Q Consensus       377 ~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~~f  442 (442)
                      +++++++|+|+|.|+|||+|.|.+.  ...++|+.+.|+ +  |.|+|+|.+    .++|+|.+++.+.|
T Consensus       574 ~~sst~tv~I~V~DvNDn~P~f~~~--~~~v~E~~~~g~-v--v~A~D~D~~~n~~~~~ysl~~~~~~~f  638 (880)
T 1q55_A          574 VGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGSDLTW  638 (880)
T ss_dssp             CCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCSSSSC
T ss_pred             CcEeEEEEEEEEEeCCCCCCCccCc--ceEEecCCCCCe-E--EEEecCCCCCCCceEEEEECCCCCCCe
Confidence            9999999999999999999999853  688999999997 3  999999998    38999998876655

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=4.9e-65  Score=519.44  Aligned_cols=362  Identities=30%  Similarity=0.470  Sum_probs=320.5

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE   77 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~   77 (442)
                      |.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|   .|+.++|+|.++.+.                     
T Consensus        98 V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~---------------------  156 (550)
T 3q2v_A           98 VTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPE---------------------  156 (550)
T ss_dssp             EECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESC---------------------
T ss_pred             EEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCC---------------------
Confidence            67999999999999999999999999999999999999998   678888888763210                     


Q ss_pred             cccCCCcEEEEEEeCCCCCcEEEeCCccEEEE-cccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838          78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSN-LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP  156 (442)
Q Consensus        78 ~~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~-~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P  156 (442)
                                    ....++|.|++.+|.|.+ .++||||....|.|+|+|+|+++++   ++++++|.|+|.|+|||+|
T Consensus       157 --------------~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~---~s~t~~v~I~V~DvNDn~P  219 (550)
T 3q2v_A          157 --------------LPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG---LSTTAKAVITVKDINDNAP  219 (550)
T ss_dssp             --------------CSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTS---CCCEEEEEEEEECCSCSCC
T ss_pred             --------------CCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCC---eeEEEEEEEEecccCCCCC
Confidence                          013467888888999987 4789999999999999999987764   7899999999999999999


Q ss_pred             eeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCc--eEEEEEecCCCCCeEec----CcceEEEEcccCCcccccEEEE
Q psy6838         157 EFITA-NETTIPENSPLNTVVAALKAIDRDEGQNS--YVEYSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTL  229 (442)
Q Consensus       157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~--~~~y~i~~~~~~~F~id----~~tG~i~~~~~lD~e~~~~~~l  229 (442)
                      .|... |.+.|.|+ ++|+.++++.|+|+|.+.++  .++|+|.+...++|.|+    +.+|.|++.++||||....|.|
T Consensus       220 ~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l  298 (550)
T 3q2v_A          220 VFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYIL  298 (550)
T ss_dssp             EESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEE
T ss_pred             EEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEEEEecccCCccccceEEE
Confidence            99886 89999999 99999999999999998776  46799998667889998    6899999999999999999999


Q ss_pred             EEEEEeCCC---CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCC
Q psy6838         230 EIKAKDRGE---PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDL  306 (442)
Q Consensus       230 ~V~a~D~~~---~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~  306 (442)
                      .|+|+|++.   +.++++++|+|.|.|+|| +|.|....|.                                +.|.|++
T Consensus       299 ~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~--------------------------------~~v~E~~  345 (550)
T 3q2v_A          299 HVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERR--------------------------------VEVPEDF  345 (550)
T ss_dssp             EEEEEESSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCE--------------------------------EEEETTC
T ss_pred             EEEEEeCCCCCCCccceEEEEEEEEEecCC-CCeEcCcceE--------------------------------EEEecCC
Confidence            999999873   458899999999999999 9999776554                                4556666


Q ss_pred             CCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC-----cEEEEEEEEEECCCCCceEE
Q psy6838         307 PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV-----HHYIFVVQAQDTGKPMMSST  381 (442)
Q Consensus       307 ~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~-----~~~~l~V~a~D~~~~~~~~~  381 (442)
                      ++|+.|+++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||..     ..|.|+|+|+|+|.|+++++
T Consensus       346 ~~gt~v~~v~A~D~D~g~n~~i~y~i~~-~~~~~f~id~~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~  424 (550)
T 3q2v_A          346 GVGQEITSYTAREPDTFMDQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGT  424 (550)
T ss_dssp             CSSCEEEECCEECCCCSTTCCCEEEEEE-CTTCCEEECTTTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEE
T ss_pred             CCCCEEEEEeCCCCCCCCCCCEEEEEec-CCCCcEEEeCCCcEEEECCccCcccccccCCCEEEEEEEEEeCCCCcceeE
Confidence            7777777778899999999999999974 56789999999999999999999998     89999999999999999999


Q ss_pred             EEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCC
Q psy6838         382 VTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFD  440 (442)
Q Consensus       382 ~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~  440 (442)
                      ++|+|+|.|+|||+|.|.+  +...++|+.+.|..   |.|+|+|.+    .++|+|..++.+
T Consensus       425 ~~v~I~V~DvNDn~P~~~~--~~~~v~e~~~~~~~---v~A~D~D~~~n~~~~~~~l~~~~~~  482 (550)
T 3q2v_A          425 GTLLLVLLDVNDNAPIPEP--RNMQFCQRNPQPHI---ITILDPDLPPNTSPFTAELTHGASV  482 (550)
T ss_dssp             EEEEEEEECCCCCCCEESC--SSCEEESSSCCCEE---EEEECCSCTTSSSSCCCEEEECCSS
T ss_pred             EEEEEEEEeCCCCCCcCcC--cccceeecCCCcEE---EEEECCCCCCCCCCEEEEECCCCCC
Confidence            9999999999999999974  67889999877653   999999998    589999988764

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=2e-65  Score=521.38  Aligned_cols=364  Identities=29%  Similarity=0.406  Sum_probs=320.4

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE   77 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~   77 (442)
                      |.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|   .|+.++|+|.++.+.                     
T Consensus       104 V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~---------------------  162 (546)
T 1l3w_A          104 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE---------------------  162 (546)
T ss_dssp             EECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSC---------------------
T ss_pred             EEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCC---------------------
Confidence            67999999999999999999999999999999999999988   577788877653210                     


Q ss_pred             cccCCCcEEEEEEeCCCCCcEEEeCCccEEEEc-ccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838          78 DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNL-KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP  156 (442)
Q Consensus        78 ~~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~-~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P  156 (442)
                                    ....++|.|++.+|.|++. +.||||....|.|+|+|+|+++++   ++++++|.|+|.|+|||+|
T Consensus       163 --------------~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~---~s~~~~v~I~V~DvNDn~P  225 (546)
T 1l3w_A          163 --------------EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---LSVEGKAIIQITDANDNAP  225 (546)
T ss_dssp             --------------CSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEECCCCCCC
T ss_pred             --------------cccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCC---cceEEEEEEEEeecCCCCC
Confidence                          0134678888889999885 789999999999999999998764   7999999999999999999


Q ss_pred             eeccC-CeeEeeCCCCCCcEEEEEEEEeCC--CCCCceEEEEEecCCCCCeEec----CcceEEEEcccCCcccccEEEE
Q psy6838         157 EFITA-NETTIPENSPLNTVVAALKAIDRD--EGQNSYVEYSIINSEATPFSLG----PVDGLLRVAQKLDREIKSNYTL  229 (442)
Q Consensus       157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D--~~~~~~~~y~i~~~~~~~F~id----~~tG~i~~~~~lD~e~~~~~~l  229 (442)
                      .|... |...|+|+ ++|+.|+++.|+|+|  .+.|+.++|+|.+...+.|.|+    ..+|.|++.++||||....|.|
T Consensus       226 ~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l  304 (546)
T 1l3w_A          226 IFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVL  304 (546)
T ss_dssp             CBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEE
T ss_pred             ccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEEEEECccCCcccccEEEE
Confidence            99987 89999999 999999999999999  6788999999998446789995    2689999999999999999999


Q ss_pred             EEEEEeCCC---CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCC
Q psy6838         230 EIKAKDRGE---PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDL  306 (442)
Q Consensus       230 ~V~a~D~~~---~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~  306 (442)
                      .|+|+|++.   +.++++++|+|.|.|+|| +|.|....|.+.++                                |+.
T Consensus       305 ~V~a~D~~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~--------------------------------En~  351 (546)
T 1l3w_A          305 QITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVS--------------------------------EDL  351 (546)
T ss_dssp             EECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBC--------------------------------TTC
T ss_pred             EEEEEECCCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEe--------------------------------CCC
Confidence            999999873   467899999999999999 99998776655554                                555


Q ss_pred             CCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCCCceEEE
Q psy6838         307 PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKPMMSSTV  382 (442)
Q Consensus       307 ~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~~~~~~~  382 (442)
                      ++|+.++++.|+|+|.+.++.++|+|.+ +..++|.|++.+|.|++.+.||||..    ..|.|+|+|+|+|.|++++++
T Consensus       352 ~~g~~v~~v~A~D~D~g~n~~i~ysi~~-~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~p~~s~~~  430 (546)
T 1l3w_A          352 SRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTG  430 (546)
T ss_dssp             CSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCE
T ss_pred             CCCCEEEEEEEECCCCCCCceEEEEECC-CCCCcEEEeCCcEEEEECCccCCccccCCCCEEEEEEEEEECCCCCcEeEE
Confidence            5666666777799999999999999984 45689999999999999999999997    899999999999999999999


Q ss_pred             EEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEeeCCCCCC
Q psy6838         383 TVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPIGDFDLL  442 (442)
Q Consensus       383 ~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~~~~~~f  442 (442)
                      +|+|+|.|+|||+|.|.+  +...|+|+.+.|+ +  +.|+|+|.+    .++|+|.+++.+.|
T Consensus       431 ~v~I~V~DvNDn~P~f~~--~~~~v~e~~~~g~-v--v~A~D~D~~~n~~~~~y~l~~~~~~~f  489 (546)
T 1l3w_A          431 TLILHVLDVNDNGPVPSP--RVFTMCDQNPEPQ-V--LTISDADIPPNTYPYKVSLSHGSDLTW  489 (546)
T ss_dssp             EEECCBCCCCCSCCCBSC--CCEEECSSSCCCE-E--EEBCCSSCTTTTCCCCCBCCSCSSSSC
T ss_pred             EEEEEEEECCCCcCCccC--ceEEEecCCCCCe-E--EEEEeCCCCCCCccEEEEECCCCCCCE
Confidence            999999999999999985  3688999999997 3  999999998    38999998876655

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=3.9e-64  Score=513.77  Aligned_cols=362  Identities=30%  Similarity=0.451  Sum_probs=316.6

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC--CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG--VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED   78 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~--~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~   78 (442)
                      |.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|  .|+.++|+|.++.+.                      
T Consensus        98 V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~----------------------  155 (559)
T 3q2w_A           98 VIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPS----------------------  155 (559)
T ss_dssp             EECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESC----------------------
T ss_pred             EEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCC----------------------
Confidence            67999999999999999999999999999999999999986  578888888653110                      


Q ss_pred             ccCCCcEEEEEEeCCCCCcEEEeCCccEEEEcc-cCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCe
Q psy6838          79 VSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLK-HLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE  157 (442)
Q Consensus        79 ~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~-~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~  157 (442)
                                   ....++|.|++.+|.|.+.+ .||||+...|.|+|+|+|+++.+..+++++++|.|+|.|+|||+|.
T Consensus       156 -------------~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~  222 (559)
T 3q2w_A          156 -------------TPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPE  222 (559)
T ss_dssp             -------------CSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCE
T ss_pred             -------------CCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCc
Confidence                         01126788888899998887 9999999999999999998764333479999999999999999999


Q ss_pred             eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCC--CceEEEEEecCC-CCCeEe----cCcceEEEEcccCCcccccEEEE
Q psy6838         158 FITA-NETTIPENSPLNTVVAALKAIDRDEGQ--NSYVEYSIINSE-ATPFSL----GPVDGLLRVAQKLDREIKSNYTL  229 (442)
Q Consensus       158 f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~--~~~~~y~i~~~~-~~~F~i----d~~tG~i~~~~~lD~e~~~~~~l  229 (442)
                      |... |...|+|+. +|+.++++.|+|+|.+.  ++.++|+|..++ .++|.|    ++.+|.|++.++||||....|.|
T Consensus       223 f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l  301 (559)
T 3q2w_A          223 FTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVL  301 (559)
T ss_dssp             ESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEE
T ss_pred             cccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEE
Confidence            9987 889999997 89999999999999975  567999998876 678999    57899999999999999999999


Q ss_pred             EEEEEeCC------CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEe
Q psy6838         230 EIKAKDRG------EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVL  303 (442)
Q Consensus       230 ~V~a~D~~------~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~  303 (442)
                      +|.|+|++      .++++++++|+|.|.|+|| +|.|....|.                                +.|.
T Consensus       302 ~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~--------------------------------~~v~  348 (559)
T 3q2w_A          302 TVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKI--------------------------------IRQE  348 (559)
T ss_dssp             EEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEE--------------------------------EEEE
T ss_pred             EEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceE--------------------------------EEEe
Confidence            99999974      2568999999999999999 6888766544                                4566


Q ss_pred             cCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEEEEEEECCCCCce
Q psy6838         304 EDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFVVQAQDTGKPMMS  379 (442)
Q Consensus       304 E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~V~a~D~~~~~~~  379 (442)
                      |+.++|+.|+++.|+|+|.+.|+.++|+|.+ +..++|.|++.+|.|++.+.||||..    ..|.|+|+|+|+|.|+++
T Consensus       349 En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~-~~~~~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~p~~s  427 (559)
T 3q2w_A          349 EGLHAGTMLTTLTAQDPDRYMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMS  427 (559)
T ss_dssp             SCCCTTCEEEECCEECSCSSSCCCEEEEEEE-CTTCCEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSSSCCE
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCceEEEEcc-CCccceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCCCcce
Confidence            6777777788888899999999999999985 45689999999999999999999976    899999999999999999


Q ss_pred             EEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC----eeEEEEee
Q psy6838         380 STVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG----KLPFLLPI  436 (442)
Q Consensus       380 ~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~----~~~y~i~~  436 (442)
                      ++++|.|+|.|+|||+|.|.+..  ..++|+  .+..+++|.|+|+|.+    .++|+|..
T Consensus       428 s~~~v~I~V~DvNDn~P~f~~~~--~~v~e~--~~~~v~~v~A~D~D~~~n~~~~~ysl~~  484 (559)
T 3q2w_A          428 GTGTLQIYLLDINDNAPQVLPQE--AETCET--PEPNSINITALDYDIDPNAGPFAFDLPL  484 (559)
T ss_dssp             EEEEEEEEEECCSCCCCEESCTT--CCCCSC--CCTTCEEECEECSCCTTSSSSCEEECCS
T ss_pred             EEEEEEEEEEEccCCCCcccCCc--eEEeec--CCCcEEEEEEEcCCCCCCCCCEEEEEcC
Confidence            99999999999999999998654  457888  4555789999999996    69999985

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=3.2e-59  Score=476.53  Aligned_cols=350  Identities=27%  Similarity=0.407  Sum_probs=307.3

Q ss_pred             EEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .++|+|+.+  .++.|+++.| |.|.  ++.++|+|.++..                                   .+..
T Consensus         6 ~~~v~En~~~~~~~~v~~v~a-d~d~--~~~v~Ysi~~~~~-----------------------------------~~~~   47 (550)
T 3q2v_A            6 PISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGA-----------------------------------DKPP   47 (550)
T ss_dssp             CEEEETTCCSSSSEEEEECEE-GGGG--TSCEEEEEESBTT-----------------------------------TBSS
T ss_pred             CEEEeCCCCCCcCeEEEEEec-CCCC--CceEEEEEECCCC-----------------------------------CCCC
Confidence            479999985  5788999999 7765  6677777764210                                   0123


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||+...|.|+|+|+|.++++   ++.++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus        48 ~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~G  124 (550)
T 3q2v_A           48 VGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG  124 (550)
T ss_dssp             CSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCB---CSCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTT
T ss_pred             CceEEEeCCceEEEECCccCcccCCeeEEEEEEEeCCCCc---ccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCC
Confidence            4689999999999999999999999999999999998764   567889999999999999999977 899999999999


Q ss_pred             cEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEE-cccCCcccccEEEEEEEEEeCCCCCCcee
Q psy6838         174 TVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRV-AQKLDREIKSNYTLEIKAKDRGEPSKSSR  244 (442)
Q Consensus       174 ~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~-~~~lD~e~~~~~~l~V~a~D~~~~~~~~~  244 (442)
                      +.++++.|+|+|.+   .|+.++|+|.++.     .+.|.|++.+|.|++ .++||||....|.|.|+|+|+|+++++++
T Consensus       125 t~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t  204 (550)
T 3q2v_A          125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT  204 (550)
T ss_dssp             CEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCE
T ss_pred             CEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEE
Confidence            99999999999998   7899999998753     468999999999988 47999999999999999999988899999


Q ss_pred             EEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCC
Q psy6838         245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV  324 (442)
Q Consensus       245 ~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~  324 (442)
                      ++|+|+|.|+|||+|.|....|.+.                                |.|+ +.|+.++++.|+|+|.+.
T Consensus       205 ~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------V~En-~~g~~v~~v~a~D~D~~~  251 (550)
T 3q2v_A          205 AKAVITVKDINDNAPVFNPSTYQGQ--------------------------------VPEN-EVNARIATLKVTDDDAPN  251 (550)
T ss_dssp             EEEEEEEECCSCSCCEESSSEEEEE--------------------------------EESS-CSSCCCEEECEECCSCTT
T ss_pred             EEEEEEecccCCCCCEEecceeEEE--------------------------------EecC-CCCCEEEEEEEEECCCCC
Confidence            9999999999999999987765544                                5555 566667777779999987


Q ss_pred             Ce--EEEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCC---CCceEEEEEEEEEeeCCCCC
Q psy6838         325 NG--VVTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK---PMMSSTVTVYFNVVDLNDNP  395 (442)
Q Consensus       325 ~~--~i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~---~~~~~~~~v~I~V~dvNd~~  395 (442)
                      ++  .++|+|.. +..++|.|+    ..+|.|++.+.||||....|.|+|+|+|++.   |.++++++|+|+|.|+|| +
T Consensus       252 n~~~~~~ysi~~-~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~~~~~~v~I~V~DvND-~  329 (550)
T 3q2v_A          252 TPAWKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-A  329 (550)
T ss_dssp             STTTCEEEEESS-CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEESSCCCSSCCCEEEEEEEEEECCCC-C
T ss_pred             CCcEEEEEEEEe-CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEeCCCCCCCccceEEEEEEEEEecCC-C
Confidence            76  46799986 677899998    7899999999999999999999999999873   557899999999999999 9


Q ss_pred             CccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838         396 PLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL  442 (442)
Q Consensus       396 P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f  442 (442)
                      |.|.+..|.+.|+|+++.|+.++++.|+|+|.+   .++|+|.++..++|
T Consensus       330 P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~~~~~~f  379 (550)
T 3q2v_A          330 PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWL  379 (550)
T ss_dssp             CEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEEEECTTCCE
T ss_pred             CeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEEecCCCCcE
Confidence            999999999999999999999999999999996   99999988767776

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=8.3e-60  Score=480.06  Aligned_cols=352  Identities=29%  Similarity=0.414  Sum_probs=305.2

Q ss_pred             eEEEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeC
Q psy6838          15 VYAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSG   92 (442)
Q Consensus        15 ~~~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~   92 (442)
                      .|.++|+||++  .+..|+++.+ |.|  .++.++|+|..+...                                   .
T Consensus        10 ~~~~~v~En~~g~~~~~v~~~~~-d~d--~n~~v~Ysi~~~~~~-----------------------------------~   51 (546)
T 1l3w_A           10 IPPIKVSENERGPFPKRLVQIKS-NKD--RFNKVYYSITGQGAD-----------------------------------N   51 (546)
T ss_dssp             CCCEEEESSCCSSSCEEEEECCC-SGG--GSSCEEEEEEEBTTT-----------------------------------B
T ss_pred             cceeEecCCCCCCCCcEEEEEEc-CCC--CCceEEEEEECCCCC-----------------------------------C
Confidence            46789999997  2344666664 544  577777777652110                                   0


Q ss_pred             CCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCC
Q psy6838          93 DDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSP  171 (442)
Q Consensus        93 ~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~  171 (442)
                      ...++|.|++.+|.|++.++||||+...|.|+|+|+|.++++   +++++.|.|.|.|+|||+|.|... |.+.|+|+++
T Consensus        52 ~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A~D~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~  128 (546)
T 1l3w_A           52 PPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSP---VEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQ  128 (546)
T ss_dssp             SSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSSCB---CSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCC
T ss_pred             CCCceEEEeCCccEEEECCcCCcccCceEEEEEEEEeCCCCc---ccceEEEEEEEEecccCcCEecCceeEEEEECCCC
Confidence            124688888899999999999999999999999999998764   577899999999999999999976 8999999999


Q ss_pred             CCcEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCCCc
Q psy6838         172 LNTVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSKS  242 (442)
Q Consensus       172 ~g~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~~~  242 (442)
                      +|+.++++.|+|+|.+   .|+.++|+|.++.     .++|.|++.+|.|++. ++||||....|.|.|+|+|+|+|+++
T Consensus       129 ~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s  208 (546)
T 1l3w_A          129 PGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLS  208 (546)
T ss_dssp             SSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCE
T ss_pred             CCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccCCCcccCceEEEEEEEEECCCCCcc
Confidence            9999999999999998   6889999998765     3689999999999985 79999999999999999999988999


Q ss_pred             eeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCC-
Q psy6838         243 SRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDAD-  321 (442)
Q Consensus       243 ~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D-  321 (442)
                      ++++|+|.|.|+|||+|.|....|.+                                .|.|+ ++|+.++++.|+|+| 
T Consensus       209 ~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~V~En-~~gt~v~~v~A~D~D~  255 (546)
T 1l3w_A          209 VEGKAIIQITDANDNAPIFDPKTYTA--------------------------------LVPEN-EIGFEVQRLSVTDLDM  255 (546)
T ss_dssp             EECCEEEEEECCCCCCCCBSCSEEEE--------------------------------EEESS-SCCCEEEEECBCCCSC
T ss_pred             eEEEEEEEEeecCCCCCccccccceE--------------------------------EEEeC-CCCCEEEEEEEEeCCC
Confidence            99999999999999999997776554                                45566 666667777779999 


Q ss_pred             -CCCCeEEEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCC---CCceEEEEEEEEEeeCCC
Q psy6838         322 -EGVNGVVTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK---PMMSSTVTVYFNVVDLND  393 (442)
Q Consensus       322 -~~~~~~i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~---~~~~~~~~v~I~V~dvNd  393 (442)
                       .+.|+.++|+|.+ +..++|.|+    ..+|.|++.++||||....|.|+|+|+|++.   |+++++++|+|+|.|+||
T Consensus       256 ~~g~n~~v~y~i~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~~~~~~~~~s~~~~v~I~V~DvND  334 (546)
T 1l3w_A          256 PGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE  334 (546)
T ss_dssp             TTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC
T ss_pred             CCCCCcEEEEEEEe-CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEECCCCCCCCcceeEEEEEEEEcCCC
Confidence             6788999999996 677899996    2689999999999999999999999999863   567899999999999999


Q ss_pred             CCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838         394 NPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL  442 (442)
Q Consensus       394 ~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f  442 (442)
                       +|.|.+..|.+.|+|+++.|+.++++.|+|+|.+   .++|+|.++..++|
T Consensus       335 -~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~~~~~~F  385 (546)
T 1l3w_A          335 -APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWL  385 (546)
T ss_dssp             -CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCC
T ss_pred             -CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEECCCCCCcE
Confidence             9999988899999999999999999999999986   89999998877887

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=3.3e-59  Score=477.37  Aligned_cols=353  Identities=29%  Similarity=0.397  Sum_probs=308.3

Q ss_pred             EEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCC
Q psy6838          17 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE   96 (442)
Q Consensus        17 ~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~   96 (442)
                      .++|+||.+ |.....+.+.+.|.+.|+.++|+|.++...                                   ....+
T Consensus         6 ~~~v~En~~-g~~~~~i~~~~~D~~~n~~i~Ysi~~~~~~-----------------------------------~~~~~   49 (559)
T 3q2w_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGAD-----------------------------------QPPTG   49 (559)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESBTTT-----------------------------------BSSTT
T ss_pred             cEEeeCCCC-CCCCeEEEEEeeCCCCCcEEEEEEECCCCC-----------------------------------CCCCc
Confidence            578999997 877777888888877677777777642110                                   01236


Q ss_pred             cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcE
Q psy6838          97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTV  175 (442)
Q Consensus        97 ~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~  175 (442)
                      +|.|++.+|.|++.++||||+...|.|+|+|+|+++++   +++++.|.|+|.|+|||+|.|... |.+.|+|++++|+.
T Consensus        50 ~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~  126 (559)
T 3q2w_A           50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ---VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY  126 (559)
T ss_dssp             SEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCE---EEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCE
T ss_pred             eEEEeCCceEEEECCccCCCCCceEEEEEEEEECCCCc---cceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcE
Confidence            89999999999999999999999999999999998764   688899999999999999999977 89999999999999


Q ss_pred             EEEEEEEeCCCC--CCceEEEEEecCCC-----CCeEecCcceEEEEcc-cCCcccccEEEEEEEEEeCCC---CCCcee
Q psy6838         176 VAALKAIDRDEG--QNSYVEYSIINSEA-----TPFSLGPVDGLLRVAQ-KLDREIKSNYTLEIKAKDRGE---PSKSSR  244 (442)
Q Consensus       176 v~~v~a~D~D~~--~~~~~~y~i~~~~~-----~~F~id~~tG~i~~~~-~lD~e~~~~~~l~V~a~D~~~---~~~~~~  244 (442)
                      ++++.|+|+|.+  .|+.++|+|.++..     +.|.|++.+|.|++.+ .||||....|.|.|+|+|+++   ++++++
T Consensus       127 v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t  206 (559)
T 3q2w_A          127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT  206 (559)
T ss_dssp             EEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTTTCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEE
T ss_pred             EEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCCceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccce
Confidence            999999999987  68899999987642     6899999999999987 999999999999999999865   458999


Q ss_pred             EEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCC
Q psy6838         245 TKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV  324 (442)
Q Consensus       245 ~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~  324 (442)
                      ++|+|+|.|+|||+|.|....|.+.++                                |+. +|+.++++.|+|+|.+.
T Consensus       207 ~~v~I~V~DvNDn~P~f~~~~y~~~V~--------------------------------En~-~g~~v~~v~a~D~D~~~  253 (559)
T 3q2w_A          207 ATAVITVTDVNDNPPEFTAMTFYGEVP--------------------------------ENR-VDVIVANLTVTDKDQPH  253 (559)
T ss_dssp             EEEEEEEECCSCSCCEESSSEEEEEEE--------------------------------SSC-SSEEEEEEEEECCSCTT
T ss_pred             EEEEEEEEeCCCCCCccccccceeEec--------------------------------CCC-CCcEEEEEEEEcCCCCC
Confidence            999999999999999998877655544                                554 56667777779999875


Q ss_pred             --CeEEEEEEEeCCCCCCeEE----eCCccEEEEcccCCCccCcEEEEEEEEEECC------CCCceEEEEEEEEEeeCC
Q psy6838         325 --NGVVTYSVVSDWANDVFSI----NPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG------KPMMSSTVTVYFNVVDLN  392 (442)
Q Consensus       325 --~~~i~y~l~~~~~~~~f~i----d~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~------~~~~~~~~~v~I~V~dvN  392 (442)
                        ++.++|+|..++..++|.|    +..+|.|++.++||||....|.|+|+|+|++      .|+++++++|+|+|.|+|
T Consensus       254 ~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvN  333 (559)
T 3q2w_A          254 TPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVN  333 (559)
T ss_dssp             STTTSBCCEEEESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCC
T ss_pred             CCceeEEEEEecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCC
Confidence              5679999998888899999    5789999999999999999999999999974      256899999999999999


Q ss_pred             CCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCCCCC
Q psy6838         393 DNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDFDLL  442 (442)
Q Consensus       393 d~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~~~f  442 (442)
                      | +|.|.+..|.+.|+|+++.|+.++++.|+|+|.+   .++|+|.++..++|
T Consensus       334 D-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~~~~~~f  385 (559)
T 3q2w_A          334 E-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWL  385 (559)
T ss_dssp             C-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEEEEEECTTCCE
T ss_pred             C-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEEEEccCCccce
Confidence            9 7999998899999999999999999999999987   89999998777776

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-58  Score=457.06  Aligned_cols=340  Identities=26%  Similarity=0.419  Sum_probs=297.0

Q ss_pred             CcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCCcEEEeCCccE
Q psy6838          27 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGT  106 (442)
Q Consensus        27 g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~~F~i~~~~g~  106 (442)
                      ...+.+++|+|+|.|.|+.++|+|..+.....|.|++                              ..++|.|+ .+|.
T Consensus         8 ~~Pv~~v~AtD~D~g~n~~v~Ysi~~~~~~~~F~I~~------------------------------~~~~f~v~-~tG~   56 (419)
T 3ubh_A            8 VRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRD------------------------------DNPWVTVE-TNGA   56 (419)
T ss_dssp             EEEEEEEEEEGGGGCSTTCEEEECCCSSTTCEEEESS------------------------------CCSSEEEC-TTSE
T ss_pred             ccceEEEEEEcccCCCCceEEEEEecCCCCceEEEcC------------------------------CCccEEEC-CCcE
Confidence            4678999999999999999999998876677788874                              24689997 6999


Q ss_pred             EEEcccCCcccC---cEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC---CeeEeeCCCCCCcEEEEEE
Q psy6838         107 LSNLKHLDRETK---SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAALK  180 (442)
Q Consensus       107 l~~~~~lD~E~~---~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~---~~~~v~E~~~~g~~v~~v~  180 (442)
                      |++.++||||+.   ..|.|.|+|+|.+.++...+++.++|.|+|.|+|||+|.|...   |...|+|++++|+.|+++.
T Consensus        57 i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~  136 (419)
T 3ubh_A           57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQ  136 (419)
T ss_dssp             EEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECC
T ss_pred             EEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEE
Confidence            999999999997   7999999999987654434788899999999999999999876   5789999999999999999


Q ss_pred             EEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCC----CCceeEEEEEEEEeCC
Q psy6838         181 AIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEP----SKSSRTKFFIRLLDEN  255 (442)
Q Consensus       181 a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~----~~~~~~~v~I~V~d~n  255 (442)
                      |+|+|.+.+  ++|+|..+. .++|.|++.+|.|++.+.||+|....|.|+|+|+|+|++    .+++++.++|.|.| |
T Consensus       137 A~D~D~g~n--~~y~i~~~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-n  213 (419)
T 3ubh_A          137 ARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-G  213 (419)
T ss_dssp             EECSSTTCC--EEEEEEEESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-S
T ss_pred             EECCCCCce--eEEEEEeCCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-C
Confidence            999999887  899998765 579999999999999999999999999999999998764    45778889999999 9


Q ss_pred             CCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEE-e
Q psy6838         256 DNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-S  334 (442)
Q Consensus       256 d~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~-~  334 (442)
                      ||+|.|....|.+                                .|.||.++|+.|+++.|.|+|   ++.++|+|. .
T Consensus       214 dn~P~F~~~~y~~--------------------------------~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~  258 (419)
T 3ubh_A          214 KRAPQFYMPSYEA--------------------------------EIPENQKKDSDIISIKAKSFA---DREIRYTLKAQ  258 (419)
T ss_dssp             CCCCEESSSCEEE--------------------------------EEETTCCTTCEEEECCEECSS---CCCCEEEEEES
T ss_pred             CCCCceecCeeEE--------------------------------EecCCCCCCcEEEEEEEecCC---CCceEEEEecC
Confidence            9999997776554                                455666666777777779987   678999997 4


Q ss_pred             CCCCCCeEEeCCccEEEEcccCCCccCc---EEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCee-EEecC
Q psy6838         335 DWANDVFSINPQSGIFTLTAKLDYEDVH---HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNI-PVYEN  410 (442)
Q Consensus       335 ~~~~~~f~id~~tG~l~~~~~ld~e~~~---~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~-~v~E~  410 (442)
                      ++..++|.|++.+|.|++.++||||...   .|.|+|+|+|.+ ++++++++|+|+|.|+|||+|.|....|.. .|+|+
T Consensus       259 ~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~  337 (419)
T 3ubh_A          259 GQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDED  337 (419)
T ss_dssp             SSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEEEEECTT-TSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETT
T ss_pred             CCCCCcEEEECCCCEEEECcccCccccccccEEEEEEEEEeCC-CCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCC
Confidence            6677899999999999999999999865   799999999754 358899999999999999999999888886 79999


Q ss_pred             CCCCceEEEEEEEeCCCC---eeEEEEee
Q psy6838         411 VTLGTGLASVHAVDLDSG---KLPFLLPI  436 (442)
Q Consensus       411 ~~~g~~v~~v~a~D~D~~---~~~y~i~~  436 (442)
                      ++.|+.++++.|+|+|.+   .++|+|.+
T Consensus       338 ~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~  366 (419)
T 3ubh_A          338 IPLGTSILRVKAMDSDSGSNAEIEYLVSD  366 (419)
T ss_dssp             CCTTCEEEECCEECSSCGGGGCEEEEESC
T ss_pred             CCCCCEEEEEEEEeCCCCCCCEEEEEEcC
Confidence            999999999999999998   79999975

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=1.8e-56  Score=476.20  Aligned_cols=357  Identities=25%  Similarity=0.360  Sum_probs=313.6

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCC----CCcEEEcCCccEEEEe-e
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWA----NDVFSINPQSGIFTLT-A   72 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~----~~~f~id~~tg~~~~~-~   72 (442)
                      |.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|   .|+.++|+|.++.+    .++|.|++.||.|++. +
T Consensus       253 V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~  332 (880)
T 1q55_A          253 VIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT  332 (880)
T ss_dssp             EECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSC
T ss_pred             EEecCCCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEecc
Confidence            68999999999999999999999999999999999999998   68999999998763    5799999999999986 6


Q ss_pred             eccccccc-------------------------------------------------------------------CCCcE
Q psy6838          73 KLDYEDVS-------------------------------------------------------------------DNGRL   85 (442)
Q Consensus        73 ~ld~~~~~-------------------------------------------------------------------~~~~i   85 (442)
                      .||||...                                                                   .|+.+
T Consensus       333 ~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~gt~V~~v~A~D~D~~~g~n~~v  412 (880)
T 1q55_A          333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQA  412 (880)
T ss_dssp             CCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESSSCCCEEEEECBCCCSCTTSTTSCE
T ss_pred             cCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccceEEEeecCCCCcEEEEEEEECCCCCCCCCceE
Confidence            89998765                                                                   24578


Q ss_pred             EEEEEeCCCCCcEEEe--C--CccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC
Q psy6838          86 EYSIVSGDDEEIFTIN--P--SNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA  161 (442)
Q Consensus        86 ~y~i~~~~~~~~F~i~--~--~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~  161 (442)
                      +|+|.. +..+.|.|+  +  .+|.|++.++||||....|.|+|+|+|+++.....++++++|+|+|.|+|| +|.|...
T Consensus       413 ~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~  490 (880)
T 1q55_A          413 VYKIRV-NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPA  490 (880)
T ss_dssp             ECCBSC-CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECCCC-CCEESSC
T ss_pred             EEEEec-CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEECCCCCCCCcceeEEEEEEEEeCCC-CCEEecC
Confidence            999987 677899995  3  579999999999999999999999999875322236889999999999999 9999876


Q ss_pred             -CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccc----cEEEEEEEEEeC
Q psy6838         162 -NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIK----SNYTLEIKAKDR  236 (442)
Q Consensus       162 -~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~----~~~~l~V~a~D~  236 (442)
                       |.+.|.|+.++|+.|+++.|+|+|.+.++.++|+|.++..++|.|++.+|.|++.++||||..    ..|.|.|.|+|+
T Consensus       491 ~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~  570 (880)
T 1q55_A          491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDD  570 (880)
T ss_dssp             EECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEEC
T ss_pred             ceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECCCCCCCEEEeCCccEEEECCccCcccccCCCCEEEEEEEEEEC
Confidence             889999999999999999999999999999999999877789999999999999999999987    899999999999


Q ss_pred             CCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEE
Q psy6838         237 GEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVF  316 (442)
Q Consensus       237 ~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~  316 (442)
                      |.|+++++++|+|+|.|+|||+|.|...  ..                                .|.|+.+.|+ +  +.
T Consensus       571 g~p~~sst~tv~I~V~DvNDn~P~f~~~--~~--------------------------------~v~E~~~~g~-v--v~  613 (880)
T 1q55_A          571 GVSVGTGTGTLILHVLDVNDNGPVPSPR--VF--------------------------------TMCDQNPEPQ-V--LT  613 (880)
T ss_dssp             SSSCCCCCEEEECCBCCCCCSCCCBSCC--CE--------------------------------EECSSSCCCE-E--EE
T ss_pred             CCCCcEeEEEEEEEEEeCCCCCCCccCc--ce--------------------------------EEecCCCCCe-E--EE
Confidence            9999999999999999999999999633  22                                3556666665 2  77


Q ss_pred             EEeCCCCCCeE-EEEEEEeCCCCCCeEE--eCCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCC
Q psy6838         317 TTDADEGVNGV-VTYSVVSDWANDVFSI--NPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLND  393 (442)
Q Consensus       317 a~D~D~~~~~~-i~y~l~~~~~~~~f~i--d~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd  393 (442)
                      |+|+|.+.|+. ++|+|..+. ...|.|  +..++.+.+. .+|+|....|.|.|+|+|+|.  ++++++|+|+|+|+||
T Consensus       614 A~D~D~~~n~~~~~ysl~~~~-~~~f~i~~~g~~~~l~~~-~~d~~~~~~y~l~V~a~D~g~--lsst~tv~V~V~d~nd  689 (880)
T 1q55_A          614 ISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLS-PTQQLKKGDYSIYVLLSDAQN--NPQLTVVNATVCSCEG  689 (880)
T ss_dssp             BCCSSCTTTTCCCCCBCCSCS-SSSCBCCBCTTSSEEEEB-CSSCCCSSCBCCEEECCSSSC--CCEEEECCEEECSCSS
T ss_pred             EecCCCCCCCceEEEEECCCC-CCCeEEEcccceeEEEec-cCccccCCEEEEEEEEEECCc--ceeeEEEEEEEEecCC
Confidence            89999998876 899998543 457877  4455677654 557999999999999999988  8999999999999999


Q ss_pred             CCCccCC
Q psy6838         394 NPPLFDP  400 (442)
Q Consensus       394 ~~P~f~~  400 (442)
                      ++|.|..
T Consensus       690 ~~~~~~~  696 (880)
T 1q55_A          690 KAIKCQE  696 (880)
T ss_dssp             SCCCCC-
T ss_pred             Ccccccc
Confidence            9998864

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=1.7e-54  Score=427.61  Aligned_cols=308  Identities=28%  Similarity=0.428  Sum_probs=268.2

Q ss_pred             CCcCCCCCCccCCCe--EEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccc
Q psy6838           1 VSDTNDNSPVFSEPV--YAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED   78 (442)
Q Consensus         1 V~DvNDn~P~f~~~~--~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~   78 (442)
                      |.|+|||+|.|....  |.+.|+|++++|+.|+++.|+|+|.|.|  ++|+|..                          
T Consensus       101 V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~--------------------------  152 (419)
T 3ubh_A          101 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVR--------------------------  152 (419)
T ss_dssp             EECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEE--------------------------
T ss_pred             EEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEe--------------------------
Confidence            679999999999887  7899999999999999999999998765  6666654                          


Q ss_pred             ccCCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCC-CCCceeEEEEEEEEEeccCCCCe
Q psy6838          79 VSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPP-QKRLSSTTQVSIVIRDVNDNAPE  157 (442)
Q Consensus        79 ~~~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~-~~~~s~~~~v~I~V~dvNd~~P~  157 (442)
                                   +...++|.|++.+|.|++.+.||+|....|.|+|+|+|++++. ..++++++.+.|.|.| |||+|.
T Consensus       153 -------------~~~~~~F~I~~~tG~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~  218 (419)
T 3ubh_A          153 -------------DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQ  218 (419)
T ss_dssp             -------------ESSSSCEEECTTTCEEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCE
T ss_pred             -------------CCCCCeEEEeCCceEEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCc
Confidence                         3445677777788899998999999999999999999987642 1236788899999999 999999


Q ss_pred             eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEec-C-CCCCeEecCcceEEEEcccCCccccc---EEEEEE
Q psy6838         158 FITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIIN-S-EATPFSLGPVDGLLRVAQKLDREIKS---NYTLEI  231 (442)
Q Consensus       158 f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~-~-~~~~F~id~~tG~i~~~~~lD~e~~~---~~~l~V  231 (442)
                      |... |.+.|+|+.++|+.|+++.|+|+|   ++.++|+|.. + ..++|.|++.+|.|++.++||||...   .|.|.|
T Consensus       219 F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~LD~E~~~~~~~y~l~V  295 (419)
T 3ubh_A          219 FYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV  295 (419)
T ss_dssp             ESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSCCSSEEECTTTCEEEECSCCCTTCTTSCSEEEEEE
T ss_pred             eecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCCCCcEEEECCCCEEEECcccCccccccccEEEEEE
Confidence            9866 899999999999999999999987   5569999973 3 36799999999999999999999875   799999


Q ss_pred             EEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcE
Q psy6838         232 KAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSR  311 (442)
Q Consensus       232 ~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~  311 (442)
                      .|+|.++ ++++.+.|+|.|.|+|||+|.|....|..                               ..|.|+.++|+.
T Consensus       296 ~a~dd~~-~~s~~~~v~I~V~DvNDn~P~f~~~~~~~-------------------------------~~v~E~~~~gt~  343 (419)
T 3ubh_A          296 TATEDSG-GFSTSVDLTIRVTDVNDNAPKFELPDYQA-------------------------------HNVDEDIPLGTS  343 (419)
T ss_dssp             EEECTTT-SCEEEEEEEEEEECCCCCCCEESSSEEEE-------------------------------EEEETTCCTTCE
T ss_pred             EEEeCCC-CcEEEEEEEEEEEccCCCCCcccCCccee-------------------------------EEecCCCCCCCE
Confidence            9997543 68899999999999999999998766542                               146677777888


Q ss_pred             EEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCcc-CcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838         312 VGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYED-VHHYIFVVQAQDTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       312 v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~-~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  390 (442)
                      |+++.|+|+|.|.|+.++|+|..    ++|.|++ +|.|++.+.||||. ...|.|+|+|+|+|.|+++++++|+|+|.|
T Consensus       344 v~~v~A~D~D~g~n~~v~Y~i~~----~~F~Id~-~G~i~~~~~ld~E~~~~~y~l~V~a~D~G~p~~sst~~v~I~v~n  418 (419)
T 3ubh_A          344 ILRVKAMDSDSGSNAEIEYLVSD----DHFAVDS-NGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN  418 (419)
T ss_dssp             EEECCEECSSCGGGGCEEEEESC----TTEEECT-TCEEEECSCSSSSCTTCEEEEEEEEEECCSSCCEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCCCCCEEEEEEcC----CcEEECC-CeEEEECcccCcccCCceEEEEEEEEECCcCCceeEEEEEEEEec
Confidence            88888899999999999999973    4899998 89999999999998 679999999999999999999999999986

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1.6e-52  Score=398.46  Aligned_cols=297  Identities=24%  Similarity=0.392  Sum_probs=248.1

Q ss_pred             CcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCCcEEEeCCccE
Q psy6838          27 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGT  106 (442)
Q Consensus        27 g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~~F~i~~~~g~  106 (442)
                      ...+.++.|+|+|.|++|++.|+|..+                            +..+.|+|..+.  .+|.|++ +|.
T Consensus         3 ~~p~~~~~atd~D~g~ng~v~y~l~~~----------------------------~~~~~f~i~~~~--~~F~i~~-tG~   51 (316)
T 3ubf_A            3 VRPTKRIEFTEADGDTEGKSVFQLEKE----------------------------TDKETFKIRDDN--PWVTVET-NGA   51 (316)
T ss_dssp             EEEEEEEEEESGGGCSTTCEEEECCCS----------------------------STTCEEEESSCC--SSEEECT-TSE
T ss_pred             cCceEEEEEEecCCCCCceEEEEEEcC----------------------------CCcceEEEeCCC--CeEEECC-CeE
Confidence            356889999999999999999999874                            335566666443  5899998 999


Q ss_pred             EEEcccCCccc-----CcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC---CeeEeeCCCCCCcEEEE
Q psy6838         107 LSNLKHLDRET-----KSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA---NETTIPENSPLNTVVAA  178 (442)
Q Consensus       107 l~~~~~lD~E~-----~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~---~~~~v~E~~~~g~~v~~  178 (442)
                      |++.++||||.     ...|.|+|+|.|++.++  +++++++|.|.|.|+|||+|.|...   |.+.|+|++++|+.|++
T Consensus        52 l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~--~~s~~~~v~I~V~DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~  129 (316)
T 3ubf_A           52 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGI--KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFT  129 (316)
T ss_dssp             EEESSCCCGGGSCTTCEEEEEEEEEC---------CCCEEEEEEEEEECTTCCCCEECCSSSSEEEEECTTCCTTCEEEE
T ss_pred             EEECCccChhhcccccceEEEEEEEEcCCCCCC--cccceEEEEEEEEECCCCCCccCCCCCCEEEEEeCCCCCCCEEEE
Confidence            99999999998     45788999999887542  2689999999999999999999876   68999999999999999


Q ss_pred             EEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC----CCCceeEEEEEEEEe
Q psy6838         179 LKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE----PSKSSRTKFFIRLLD  253 (442)
Q Consensus       179 v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~----~~~~~~~~v~I~V~d  253 (442)
                      +.|+|+|.+.+  ++|+|..+. .++|.|++.+|.|++.++||||....|.|.|+|+|+|+    +.+++++.++|.|.|
T Consensus       130 v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d  207 (316)
T 3ubf_A          130 LQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG  207 (316)
T ss_dssp             CCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE
T ss_pred             EEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc
Confidence            99999999887  999998653 67999999999999999999999999999999999985    457888899999999


Q ss_pred             CCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEE
Q psy6838         254 ENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV  333 (442)
Q Consensus       254 ~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~  333 (442)
                       |||+|.|....|.+                                .|.|+.++|+.|+++.|+|+|   ++.++|+|.
T Consensus       208 -nDn~P~F~~~~y~~--------------------------------~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~  251 (316)
T 3ubf_A          208 -GKRAPQFYMPSYEA--------------------------------EIPENQKKDSDIISIKAKSFA---DREIRYTLK  251 (316)
T ss_dssp             -SCCCCEESSSSEEE--------------------------------EEETTCCTTCEEEECCEECTT---CCCEEEEEE
T ss_pred             -CCCCCEEcCCCceE--------------------------------EEeCCCCCCCEEEEEEEEeCC---CCEEEEEEE
Confidence             99999997776554                                455666667777777779998   678999998


Q ss_pred             -eCCCCCCeEEeCCccEEEEcccCCCccC---cEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCC
Q psy6838         334 -SDWANDVFSINPQSGIFTLTAKLDYEDV---HHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNP  395 (442)
Q Consensus       334 -~~~~~~~f~id~~tG~l~~~~~ld~e~~---~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~  395 (442)
                       .++..++|.|++.+|.|++.++||||..   ..|.|+|+|+|.++ +++++++|+|+|.|+||||
T Consensus       252 ~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~  316 (316)
T 3ubf_A          252 AQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA  316 (316)
T ss_dssp             EESSCTTTEEECTTTCEEEECSCCCSSCTTSCSEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred             cCCCCCCeEEEECCeEEEEECCcCCccccCCCceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence             5777899999999999999999999998   79999999995433 4899999999999999986

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=7e-54  Score=407.08  Aligned_cols=297  Identities=34%  Similarity=0.538  Sum_probs=258.1

Q ss_pred             EEEEecC--CCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLED--LPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~--~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .+.|.|+  .+.|+.|+++. +|+|.| ++.++|+|..                                       ++.
T Consensus         6 ~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~---------------------------------------~~~   44 (322)
T 2a62_A            6 QMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSG---------------------------------------DGA   44 (322)
T ss_dssp             CEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEE---------------------------------------TTB
T ss_pred             eeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEEC---------------------------------------CCC
Confidence            5789999  88999999985 899987 5667777654                                       233


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||....|.|+|+|+|.++++  ++++.++|.|.|.|+|||+|.|... |.+.|+|++++|
T Consensus        45 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g  122 (322)
T 2a62_A           45 GTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNK--PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILG  122 (322)
T ss_dssp             TTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTTCS--EEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTT
T ss_pred             CCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCCCC--cccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCC
Confidence            4678888889999999999999999999999999987532  2678899999999999999999986 899999999999


Q ss_pred             cEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCC--CceeEEE
Q psy6838         174 TVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPS--KSSRTKF  247 (442)
Q Consensus       174 ~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~--~~~~~~v  247 (442)
                      +.|+++.|+|+|.   |.|+.++|+|.++. .+|.|++.+|.|++. +.||||....|.|.|+|+|+|.|+  ++++++|
T Consensus       123 t~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v  201 (322)
T 2a62_A          123 TSVTNVTATDADDPVYGNSAKLVYSILEGQ-PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTL  201 (322)
T ss_dssp             CBCCCCCCCBCSCSSSTTSSCEEEEEEECT-TTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEE
T ss_pred             CEEEEEEEEeCCCCCCCccEEEEEEEccCC-CCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEE
Confidence            9999999999996   77889999999875 689999999999998 899999999999999999999874  8899999


Q ss_pred             EEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeE
Q psy6838         248 FIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV  327 (442)
Q Consensus       248 ~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~  327 (442)
                      +|.|.|+|||+|.|....|.                                +.|.|+.+.|+.|+++.|+|+|.+.|+.
T Consensus       202 ~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~En~~~gt~v~~v~A~D~D~g~n~~  249 (322)
T 2a62_A          202 TVTLTDVNDNPPKFAQSLYH--------------------------------FSVPEDVVLGTAIGRVKANDQDIGENAQ  249 (322)
T ss_dssp             EEEECCCCCCCCCCSCSEEE--------------------------------EEECSCCSSCCEEEEEECCCSSCGGGTC
T ss_pred             EEEEEecCCCCCeecCCCce--------------------------------eEeECCCCCCcEEEEEEEEeCCCCCCce
Confidence            99999999999998776654                                4555666677777777789999999999


Q ss_pred             EEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccCcEEEEEEEEEECCCCC-------ceEEEEEEEEEe
Q psy6838         328 VTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM-------MSSTVTVYFNVV  389 (442)
Q Consensus       328 i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~-------~~~~~~v~I~V~  389 (442)
                      ++|+|..++..++|.|+    ..+|.|+++++||||....|.|+|+|+|.|.|+       ++++++|.|+|.
T Consensus       250 i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          250 SSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE  322 (322)
T ss_dssp             CEEEEC---CCSSBCCBCCTTTSEEEEEBCSCCCCSSCCEEEEEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred             EEEEEECCCCCCcEEEeccCCCceEEEEECCcCCcccCCeEEEEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence            99999887778899999    468999999999999999999999999998775       457888888874

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=7.7e-45  Score=344.97  Aligned_cols=245  Identities=33%  Similarity=0.497  Sum_probs=214.1

Q ss_pred             CeeEeeCC--CCCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838         162 NETTIPEN--SPLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE  238 (442)
Q Consensus       162 ~~~~v~E~--~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~  238 (442)
                      ..+.|.|+  .+.|+.|+++. +|+|.+ ++.++|+|.++. ...|.|++.+|.|++.++||||....|.|.|+|+|++.
T Consensus         5 ~~~~v~E~~~~~~~~~v~~va-~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~   82 (322)
T 2a62_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET   82 (322)
T ss_dssp             CCEECCCSCCCSSCEECCCCC-CCCCCS-SCCCEEEEEETTBTTTEEEETTTTEEEECSCCCTTTCSBCCEEEEEECTTT
T ss_pred             ceeeeccccCCCCCEEEEEEE-EcCCCC-CCEEEEEEECCCCCCcEEEeCCcCEEEEeccCCcccccEEEEEEEEEECCC
Confidence            35788999  88999999986 899987 577999998765 46899999999999999999999999999999999875


Q ss_pred             -CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838         239 -PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT  317 (442)
Q Consensus       239 -~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a  317 (442)
                       +++++.+.|+|.|.|+|||+|.|....|.+.                                |.|++++|+.++++.|
T Consensus        83 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------v~E~~~~gt~v~~v~A  130 (322)
T 2a62_A           83 NKPLEPPSEFIIKVQDINDNAPEFLNGPYHAT--------------------------------VPEMSILGTSVTNVTA  130 (322)
T ss_dssp             CSEEEEEEEECEECCCCSCSCBCCSSSEEEEE--------------------------------ECSSCCTTCBCCCCCC
T ss_pred             CCcccceEEEEEEEEecCCCCCccCCCceEEE--------------------------------EeCCCCCCCEEEEEEE
Confidence             4577889999999999999999977765554                                4555566666666677


Q ss_pred             EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCCC--ceEEEEEEEEEeeC
Q psy6838         318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKPM--MSSTVTVYFNVVDL  391 (442)
Q Consensus       318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~~--~~~~~~v~I~V~dv  391 (442)
                      +|+|.   |.|+.++|+|..+  ..+|.|++.+|.|++. +.||||....|.|+|+|+|+|.|+  ++++++|+|+|.|+
T Consensus       131 ~D~D~~~~G~n~~i~Y~i~~~--~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~Dv  208 (322)
T 2a62_A          131 TDADDPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV  208 (322)
T ss_dssp             CBCSCSSSTTSSCEEEEEEEC--TTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCC
T ss_pred             EeCCCCCCCccEEEEEEEccC--CCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEec
Confidence            99996   7788999999865  4689999999999998 899999999999999999999874  88999999999999


Q ss_pred             CCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC---eeEEEEeeCCC-CCC
Q psy6838         392 NDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG---KLPFLLPIGDF-DLL  442 (442)
Q Consensus       392 Nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~y~i~~~~~-~~f  442 (442)
                      |||+|.|.+..|.+.|.|+++.|+.++++.|+|+|.+   .++|+|..|+. ++|
T Consensus       209 NDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F  263 (322)
T 2a62_A          209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALF  263 (322)
T ss_dssp             CCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSB
T ss_pred             CCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcE
Confidence            9999999998999999999999999999999999997   89999988765 565

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=3.9e-41  Score=300.78  Aligned_cols=205  Identities=30%  Similarity=0.484  Sum_probs=185.1

Q ss_pred             CCCCCccCCCeEE--EEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCC
Q psy6838           5 NDNSPVFSEPVYA--FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDN   82 (442)
Q Consensus         5 NDn~P~f~~~~~~--~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~   82 (442)
                      -||+|.|....|.  ++|+|++++|+.|+++.|+|+|.   +.++|+|..                              
T Consensus         2 vn~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~------------------------------   48 (210)
T 3mvs_A            2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSG------------------------------   48 (210)
T ss_dssp             CCCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEES------------------------------
T ss_pred             CCCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeC------------------------------
Confidence            3679999999986  69999999999999999999994   346666643                              


Q ss_pred             CcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-
Q psy6838          83 GRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-  161 (442)
Q Consensus        83 ~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-  161 (442)
                               ++..++|.|++.+|.|++.++||||....|.|+|+|+|+++      ..+++|.|+|.|+|||+|.|... 
T Consensus        49 ---------~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v~a~D~~~------~~~~~v~I~V~DvNDn~P~f~~~~  113 (210)
T 3mvs_A           49 ---------EEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQG------VITRKVNIQVGDVNDNAPTFHNQP  113 (210)
T ss_dssp             ---------HHHHHHEEECTTTCEEEESSCCCTTTCCEEEEEEEEECSSC------EEEEEEEEEEECCCCCCCEECSCS
T ss_pred             ---------CCCCCcEEEeCCCCEEEECCccCCcccceEEEEEEEEeCCC------CEEEEEEEEEEeCCCCCCcCCCce
Confidence                     33346788888899999999999999999999999999875      46789999999999999999876 


Q ss_pred             CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-CCC
Q psy6838         162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-EPS  240 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~-~~~  240 (442)
                      |.+.|+|+.++|+.|+++.|+|+|.|.++.++|+|..+. ++|.|++.+|.|++.++||||....|.|.|+|+|+| .++
T Consensus       114 y~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~~~-~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~  192 (210)
T 3mvs_A          114 YSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-PFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP  192 (210)
T ss_dssp             EEEEEETTCCTTCEEEECCEECCSSGGGGCEEEEESSCC-SSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSC
T ss_pred             EEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEeCCC-CCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCC
Confidence            899999999999999999999999999999999998765 689999999999999999999999999999999998 467


Q ss_pred             CceeEEEEEEEEeCCCCC
Q psy6838         241 KSSRTKFFIRLLDENDNN  258 (442)
Q Consensus       241 ~~~~~~v~I~V~d~nd~~  258 (442)
                      ++++++|+|.|.|+||||
T Consensus       193 ~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          193 LSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             CEEEEEEEEEEECCCCCC
T ss_pred             CEEEEEEEEEEEccCCCC
Confidence            999999999999999975

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-42  Score=313.66  Aligned_cols=220  Identities=19%  Similarity=0.187  Sum_probs=184.3

Q ss_pred             ccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEE
Q psy6838          10 VFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSI   89 (442)
Q Consensus        10 ~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i   89 (442)
                      .|.+..|.++|+|++++|+.|+++.|+|+|.|.  .+.|+|..+                             .--.|+|
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~--~~~~~i~~~-----------------------------~~~~y~i   50 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEE--VPSFRLGQH-----------------------------LYGTYRT   50 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTC--CCCCEECSE-----------------------------EECGGGC
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCC--cceEEEeec-----------------------------cccceec
Confidence            589999999999999999999999999999854  234444210                             0001333


Q ss_pred             EeCCCCCcEEEeCCccEEEEcccCCcccCcEE------------EEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCe
Q psy6838          90 VSGDDEEIFTINPSNGTLSNLKHLDRETKSSY------------NLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPE  157 (442)
Q Consensus        90 ~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~------------~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~  157 (442)
                      ..+ ..++|.|++.+|.|++.++||||....|            .|+|.|+|++.+. ..++++++|.|+|.|+|||+|+
T Consensus        51 ~~~-~~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~-~~~~~~~~v~I~V~DvNDn~P~  128 (246)
T 2x2u_A           51 RLH-ENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLRE-GECQWPGCARVYFSFFNTSFPA  128 (246)
T ss_dssp             EEE-ECCSEEECTTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC--------CCCTTTEEEEEEEEESSCCCC
T ss_pred             cCC-CCCEEEECCCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEEEcCCCCC-CcccceEEEEEEEEECCCCCCc
Confidence            322 3568999989999999999999999999            9999999998762 1257888999999999999999


Q ss_pred             ----------eccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCcccccE
Q psy6838         158 ----------FITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREIKSN  226 (442)
Q Consensus       158 ----------f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~  226 (442)
                                |... |.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++...+|.|++.+|.|++.++||||....
T Consensus       129 ~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~  208 (246)
T 2x2u_A          129 CSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREK  208 (246)
T ss_dssp             GGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSE
T ss_pred             cccccccccccCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccce
Confidence                      9876 99999999999999999999999999999999999988778999999999999999999999999


Q ss_pred             EEEEEEEEe-CCCCCCceeEEEEEEEEeCCCCCCeee
Q psy6838         227 YTLEIKAKD-RGEPSKSSRTKFFIRLLDENDNNPIFD  262 (442)
Q Consensus       227 ~~l~V~a~D-~~~~~~~~~~~v~I~V~d~nd~~P~f~  262 (442)
                      |.|.|+|+| .|+|+++++++|+|.|.|+|||+|.|.
T Consensus       209 y~l~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          209 YELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             EEEEEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             EEEEEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence            999999998 566889999999999999999999984

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=5e-40  Score=312.38  Aligned_cols=234  Identities=18%  Similarity=0.246  Sum_probs=190.7

Q ss_pred             EEEEEEEEeCCCCCCceEEEEEecCC----------CCCeEecCcceEEEEcccCCccc-----ccEEEEEEEEEeCCCC
Q psy6838         175 VVAALKAIDRDEGQNSYVEYSIINSE----------ATPFSLGPVDGLLRVAQKLDREI-----KSNYTLEIKAKDRGEP  239 (442)
Q Consensus       175 ~v~~v~a~D~D~~~~~~~~y~i~~~~----------~~~F~id~~tG~i~~~~~lD~e~-----~~~~~l~V~a~D~~~~  239 (442)
                      .+.++.|+|+|.++++.+.|+|..++          ..+|.|++ +|.|++.++||||.     ...|.|.|+|.|++.|
T Consensus         5 p~~~~~atd~D~g~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~   83 (316)
T 3ubf_A            5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVET-NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG   83 (316)
T ss_dssp             EEEEEEEESGGGCSTTCEEEECCCSSTTCEEEESSCCSSEEECT-TSEEEESSCCCGGGSCTTCEEEEEEEEEC------
T ss_pred             ceEEEEEEecCCCCCceEEEEEEcCCCcceEEEeCCCCeEEECC-CeEEEECCccChhhcccccceEEEEEEEEcCCCCC
Confidence            45556666666655555555554432          25799999 99999999999998     4578999999998866


Q ss_pred             -CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEE
Q psy6838         240 -SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTT  318 (442)
Q Consensus       240 -~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~  318 (442)
                       ++++.++|+|.|.|+|||+|.|....+                              .|.+.|.|++++|+.|+++.|+
T Consensus        84 ~~~s~~~~v~I~V~DvNDn~P~F~~~~~------------------------------~y~~~v~En~~~gt~v~~v~A~  133 (316)
T 3ubf_A           84 IKYTDNQRVIILVKDVNDEPPYFINRPL------------------------------PMQAVVQLNAPPNTPVFTLQAR  133 (316)
T ss_dssp             -CCCEEEEEEEEEECTTCCCCEECCSSS------------------------------SEEEEECTTCCTTCEEEECCEE
T ss_pred             CcccceEEEEEEEEECCCCCCccCCCCC------------------------------CEEEEEeCCCCCCCEEEEEEEE
Confidence             578999999999999999999976541                              1345566777778888888889


Q ss_pred             eCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC----CCceEEEEEEEEEeeCCCC
Q psy6838         319 DADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK----PMMSSTVTVYFNVVDLNDN  394 (442)
Q Consensus       319 D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~----~~~~~~~~v~I~V~dvNd~  394 (442)
                      |+|.+.+  ++|+|..++..++|.|++.+|.|++.++||||....|.|+|+|+|+|+    |+++++++++|+|.| |||
T Consensus       134 D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn  210 (316)
T 3ubf_A          134 DPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKR  210 (316)
T ss_dssp             CSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCC
T ss_pred             CCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCC
Confidence            9999876  999999777788999999999999999999999999999999999885    457888999999999 999


Q ss_pred             CCccCCCCCeeEEecCCCCCceEEEEEEEeCCCCeeEEEEe-eCC-CCCC
Q psy6838         395 PPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSGKLPFLLP-IGD-FDLL  442 (442)
Q Consensus       395 ~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~y~i~-~~~-~~~f  442 (442)
                      +|.|.+..|.+.|.|+++.|+.++++.|+|+|.+.++|+|. .++ .++|
T Consensus       211 ~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~Dn~~i~Y~i~~~~~~~~~F  260 (316)
T 3ubf_A          211 APQFYMPSYEAEIPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTF  260 (316)
T ss_dssp             CCEESSSSEEEEEETTCCTTCEEEECCEECTTCCCEEEEEEEESSCTTTE
T ss_pred             CCEEcCCCceEEEeCCCCCCCEEEEEEEEeCCCCEEEEEEEcCCCCCCeE
Confidence            99999999999999999999999999999999889999997 454 3565

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=290.25  Aligned_cols=201  Identities=32%  Similarity=0.558  Sum_probs=173.2

Q ss_pred             EEEEEecCC--CCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838          16 YAFDVLEDL--PRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD   93 (442)
Q Consensus        16 ~~~~v~E~~--~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~   93 (442)
                      +.+.|.|+.  +.|+.|+++ |+|+|.| ++.++|+|..+                                       +
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~---------------------------------------~   44 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGE---------------------------------------G   44 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEET---------------------------------------T
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECC---------------------------------------C
Confidence            478999994  578999988 8999987 67788877652                                       2


Q ss_pred             CCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCC
Q psy6838          94 DEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPL  172 (442)
Q Consensus        94 ~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~  172 (442)
                      ...+|.|++.+|.|++.++||||....|.|+|+|+|+++++  ++++++.|.|+|.|+|||+|.|... |.+.|+|++++
T Consensus        45 ~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~  122 (215)
T 2a4e_A           45 AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNR--PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNV  122 (215)
T ss_dssp             BTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCC--EEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCT
T ss_pred             CCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCCCC--cccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCC
Confidence            34578888889999999999999999999999999987532  2688999999999999999999976 89999999999


Q ss_pred             CcEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC--CCceeEE
Q psy6838         173 NTVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP--SKSSRTK  246 (442)
Q Consensus       173 g~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~--~~~~~~~  246 (442)
                      |+.|+++.|+|+|.   |.|+.++|+|.++. ..|.|++.+|.|+++ ++||||....|.|.|+|+|+|.|  +++++++
T Consensus       123 Gt~v~~v~A~D~D~~~~G~n~~i~Y~i~~~~-~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~  201 (215)
T 2a4e_A          123 GTSVIQVTASDADDPTYGNSAKLVYSILEGQ-PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTK  201 (215)
T ss_dssp             TCEEEECCEECSSCTTTCSSSCCEEEEEEST-TTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEE
T ss_pred             CCEEEEEEEEECCCCCCCCceEEEEEEeCCC-CcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEE
Confidence            99999999999997   78889999999875 689999999999999 99999999999999999999976  5899999


Q ss_pred             EEEEEEeCCCCCCe
Q psy6838         247 FFIRLLDENDNNPI  260 (442)
Q Consensus       247 v~I~V~d~nd~~P~  260 (442)
                      |+|.|.|+|||+|.
T Consensus       202 v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          202 VTITLTDDYKDDDK  215 (215)
T ss_dssp             EEEEEEC-------
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999999994

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=2.6e-39  Score=289.03  Aligned_cols=200  Identities=30%  Similarity=0.441  Sum_probs=170.8

Q ss_pred             CeeEeeCCC--CCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838         162 NETTIPENS--PLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE  238 (442)
Q Consensus       162 ~~~~v~E~~--~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~  238 (442)
                      +.+.|.|+.  |.|+.|+++ |+|+|.+ ++.++|+|.++. ..+|.|++.+|.|++.++||||....|.|.|+|+|++.
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~   83 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDT   83 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCEEEEEEEEEECCC
Confidence            567899994  579999988 8999998 678999999775 46899999999999999999999999999999999875


Q ss_pred             -CCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838         239 -PSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT  317 (442)
Q Consensus       239 -~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a  317 (442)
                       +++++.+.|+|.|.|+|||+|.|....|.+                                .|.|+++.|+.|+++.|
T Consensus        84 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~Gt~v~~v~A  131 (215)
T 2a4e_A           84 NRPLEPPSEFIVKVQDINDNPPEFLHEIYHA--------------------------------NVPERSNVGTSVIQVTA  131 (215)
T ss_dssp             CCEEEEEEEEEEEEECCCCCCCEESSSSEEE--------------------------------EEETTCCTTCEEEECCE
T ss_pred             CCcccccEEEEEEEeeCCCCCCCccCCceEE--------------------------------EEECCCCCCCEEEEEEE
Confidence             567889999999999999999998766554                                45566667777777777


Q ss_pred             EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC--CceEEEEEEEEEeeC
Q psy6838         318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP--MMSSTVTVYFNVVDL  391 (442)
Q Consensus       318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~--~~~~~~~v~I~V~dv  391 (442)
                      +|+|.   |.|+.++|+|.++  ...|.|++.+|.|+++ +.||||....|.|+|+|+|+|.|  +++++++|+|+|.|+
T Consensus       132 ~D~D~~~~G~n~~i~Y~i~~~--~~~F~Id~~tG~I~~~~~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~Dv  209 (215)
T 2a4e_A          132 SDADDPTYGNSAKLVYSILEG--QPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD  209 (215)
T ss_dssp             ECSSCTTTCSSSCCEEEEEES--TTTEEECTTTCEEEECSSCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC-
T ss_pred             EECCCCCCCCceEEEEEEeCC--CCcEEEeCCccEEEEcccCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEEC
Confidence            99997   7889999999976  3689999999999999 99999999999999999999876  589999999999999


Q ss_pred             CCCCCc
Q psy6838         392 NDNPPL  397 (442)
Q Consensus       392 Nd~~P~  397 (442)
                      |||+|.
T Consensus       210 NDn~P~  215 (215)
T 2a4e_A          210 YKDDDK  215 (215)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            999995

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-41  Score=308.74  Aligned_cols=220  Identities=17%  Similarity=0.093  Sum_probs=179.7

Q ss_pred             eeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCC--CceEE------EEEecCCCCCeEecCcceEEEEcccCCcccccEE
Q psy6838         157 EFITA-NETTIPENSPLNTVVAALKAIDRDEGQ--NSYVE------YSIINSEATPFSLGPVDGLLRVAQKLDREIKSNY  227 (442)
Q Consensus       157 ~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~--~~~~~------y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~  227 (442)
                      .|.+. |.+.|+|++++|+.|+++.|+|+|.+.  +..+.      |++..+...+|.|++.+|.|++.++||||....|
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y   81 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKL   81 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHHH
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhhh
Confidence            36555 899999999999999999999999854  33444      5544444578999999999999999999999999


Q ss_pred             ------------EEEEEEEeCCCC--CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCcc
Q psy6838         228 ------------TLEIKAKDRGEP--SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVF  293 (442)
Q Consensus       228 ------------~l~V~a~D~~~~--~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~  293 (442)
                                  .|+|.|+|+|.+  +++++++|.|.|.|+|||+|.|......    +                  -.|
T Consensus        82 ~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~----~------------------~~F  139 (246)
T 2x2u_A           82 SVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPR----E------------------LCF  139 (246)
T ss_dssp             HHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHH----H------------------HHS
T ss_pred             ccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCcccccccc----c------------------ccc
Confidence                        999999999987  6788999999999999999993221100    0                  013


Q ss_pred             CCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE-
Q psy6838         294 SEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD-  372 (442)
Q Consensus       294 ~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D-  372 (442)
                      ....|.+.|.|+.++|+.|+++.|+|+|.|.|+.++|+|.+++ ..+|.|++.+|.|++.+.||||....|.|+|+|+| 
T Consensus       140 ~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~d~  218 (246)
T 2x2u_A          140 PETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVH  218 (246)
T ss_dssp             CSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTTCCEEEESSCBCTTTCSEEEEEEEEEEC
T ss_pred             CCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECCcCEEEeCCccCccccceEEEEEEEEec
Confidence            4445666777777888888888889999999999999999654 78999999999999999999999999999999998 


Q ss_pred             CCCCCceEEEEEEEEEeeCCCCCCccC
Q psy6838         373 TGKPMMSSTVTVYFNVVDLNDNPPLFD  399 (442)
Q Consensus       373 ~~~~~~~~~~~v~I~V~dvNd~~P~f~  399 (442)
                      .|+|+++++++|.|+|.|+|||+|.|.
T Consensus       219 dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          219 AGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             ---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             CCCCcceEEEEEEEEEEEeCCCCCccC
Confidence            666889999999999999999999995

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=3.8e-39  Score=287.89  Aligned_cols=203  Identities=31%  Similarity=0.471  Sum_probs=179.6

Q ss_pred             CCCCeeccC-Ce--eEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEE
Q psy6838         153 DNAPEFITA-NE--TTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYT  228 (442)
Q Consensus       153 d~~P~f~~~-~~--~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~  228 (442)
                      |++|.|... |.  +.|+|++++|+.|+++.|+|+|.+   .++|+|.++. .++|.|++.+|.|++.++||||....|.
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~---~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~y~   79 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---PLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFT   79 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC---CCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCEEE
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC---cEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccceEE
Confidence            469999877 43  699999999999999999999964   3899998765 4689999999999999999999999999


Q ss_pred             EEEEEEeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCC
Q psy6838         229 LEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPR  308 (442)
Q Consensus       229 l~V~a~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~  308 (442)
                      |.|.|+|+++   ..++.++|.|.|+|||+|.|....|.                                +.|.|+.+.
T Consensus        80 l~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y~--------------------------------~~v~E~~~~  124 (210)
T 3mvs_A           80 VEFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPYS--------------------------------VRIPENTPV  124 (210)
T ss_dssp             EEEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSEE--------------------------------EEEETTCCT
T ss_pred             EEEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceEE--------------------------------EEEECCCCC
Confidence            9999999864   46789999999999999999777654                                445566667


Q ss_pred             CcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECC-CCCceEEEEEEEE
Q psy6838         309 GSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG-KPMMSSTVTVYFN  387 (442)
Q Consensus       309 g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~-~~~~~~~~~v~I~  387 (442)
                      |+.++++.|+|+|.|.|+.++|+|..  ..++|.|++.+|.|++.++||||....|.|+|+|+|+| .|+++++++++|+
T Consensus       125 gt~v~~v~A~D~D~g~n~~v~Y~i~~--~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~  202 (210)
T 3mvs_A          125 GTPIFIVNATDPDLGAGGSVLYSFQP--PSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAII  202 (210)
T ss_dssp             TCEEEECCEECCSSGGGGCEEEEESS--CCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEE
T ss_pred             CCEEEEEEEEeCCCCCCceEEEEEeC--CCCCEEEeCCcEEEEECCcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEE
Confidence            77777777799999999999999974  35799999999999999999999999999999999998 4679999999999


Q ss_pred             EeeCCCCC
Q psy6838         388 VVDLNDNP  395 (442)
Q Consensus       388 V~dvNd~~  395 (442)
                      |.|+||+|
T Consensus       203 V~DvND~~  210 (210)
T 3mvs_A          203 ITDMQDMD  210 (210)
T ss_dssp             EECCCCCC
T ss_pred             EEccCCCC
Confidence            99999975

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=7.3e-37  Score=273.61  Aligned_cols=195  Identities=31%  Similarity=0.471  Sum_probs=174.1

Q ss_pred             eeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC
Q psy6838         163 ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG  237 (442)
Q Consensus       163 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~  237 (442)
                      .++|+||++ |+.++++.+.|.|.+.++.++|+|.++.     .+.|.|++.+|.|++.++||||....|.|+|+|+|+|
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g   84 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN   84 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCeEEEEEEEEECC
Confidence            678999998 8888899999999988999999999763     4689999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838         238 EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT  317 (442)
Q Consensus       238 ~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a  317 (442)
                      .+++++.+.|+|.|.|+|||+|.|....|.+.                                |.|+++.|+.|+++.|
T Consensus        85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~--------------------------------v~En~~~gt~v~~v~A  132 (215)
T 2qvi_A           85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGS--------------------------------VPEGSKPGTYVMTVTA  132 (215)
T ss_dssp             TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEE--------------------------------ECSSCCTTCEEEECCC
T ss_pred             CCceeeeEEEEEEEeECCCCCCcccCceeEEE--------------------------------EeCCCCCCCEEEEEEE
Confidence            99999999999999999999999987765544                                5555666666677777


Q ss_pred             EeCCC--CCCeEEEEEEEeCC----CCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC---CceEEEEEEEE
Q psy6838         318 TDADE--GVNGVVTYSVVSDW----ANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP---MMSSTVTVYFN  387 (442)
Q Consensus       318 ~D~D~--~~~~~i~y~l~~~~----~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~---~~~~~~~v~I~  387 (442)
                      +|+|.  +.|+.++|+|..++    ..+.|.|++.+|.|++. +.||||....|.|.|+|+|+|+|   +++++++|+|+
T Consensus       133 ~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~  212 (215)
T 2qvi_A          133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVIT  212 (215)
T ss_dssp             BCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEE
T ss_pred             EeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEE
Confidence            99998  78999999999775    46899999999999995 79999999999999999999887   78999999999


Q ss_pred             Eee
Q psy6838         388 VVD  390 (442)
Q Consensus       388 V~d  390 (442)
                      |.|
T Consensus       213 V~D  215 (215)
T 2qvi_A          213 VTD  215 (215)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            986

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=9.3e-37  Score=272.93  Aligned_cols=198  Identities=30%  Similarity=0.411  Sum_probs=176.6

Q ss_pred             EEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCCCC
Q psy6838          17 AFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEE   96 (442)
Q Consensus        17 ~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~~~   96 (442)
                      .++|+|+++ |+.++++.|.|.|.+.|+.++|+|.++..                                   .+...+
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~-----------------------------------~~~~~~   49 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGA-----------------------------------DQPPTG   49 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTS-----------------------------------SSTTCS
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCC-----------------------------------CCCCCC
Confidence            579999999 98889999999998878888888865310                                   012346


Q ss_pred             cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCCcE
Q psy6838          97 IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLNTV  175 (442)
Q Consensus        97 ~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g~~  175 (442)
                      +|.|++.+|.|++.++||||....|.|+|+|+|.++++   +++++.|.|+|.|+|||+|.|... |.+.|+|++++|+.
T Consensus        50 ~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~  126 (215)
T 2qvi_A           50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ---VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTY  126 (215)
T ss_dssp             SEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTTCC---CEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCE
T ss_pred             cEEEeCCccEEEECcccCcccCCeEEEEEEEEECCCCc---eeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCE
Confidence            88888889999999999999999999999999999865   788999999999999999999976 89999999999999


Q ss_pred             EEEEEEEeCCC--CCCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC---CCcee
Q psy6838         176 VAALKAIDRDE--GQNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP---SKSSR  244 (442)
Q Consensus       176 v~~v~a~D~D~--~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~---~~~~~  244 (442)
                      |+++.|+|+|.  +.|+.++|+|.++.     .+.|.|++.+|.|++. ++||||....|.|.|+|+|+|++   +++++
T Consensus       127 v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t  206 (215)
T 2qvi_A          127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNT  206 (215)
T ss_dssp             EEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSEEEEEEECCTTTTCTTTSCCCE
T ss_pred             EEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCeEEEEEEEEECCCCCCCCcceE
Confidence            99999999998  78999999999874     4789999999999995 79999999999999999999887   78999


Q ss_pred             EEEEEEEEe
Q psy6838         245 TKFFIRLLD  253 (442)
Q Consensus       245 ~~v~I~V~d  253 (442)
                      ++|+|.|.|
T Consensus       207 ~~v~I~V~D  215 (215)
T 2qvi_A          207 ATAVITVTD  215 (215)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEEC
Confidence            999999976

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=4.5e-36  Score=268.76  Aligned_cols=196  Identities=27%  Similarity=0.364  Sum_probs=174.1

Q ss_pred             EEEEecCCC--CCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~~~--~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .++|+|+++  .|+.|+++.| |.|.  ++.++|+|.++..                                   .+..
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~-----------------------------------~~~~   47 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGA-----------------------------------DKPP   47 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTT-----------------------------------TBSS
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCC-----------------------------------CCCC
Confidence            789999999  6788999999 7775  7778888765211                                   0223


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||....|.|+|+|+|.++++   ++++++|.|+|.|+|||+|.|... |.+.|.|++++|
T Consensus        48 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~g  124 (213)
T 3qrb_A           48 VGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEA---VEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPG  124 (213)
T ss_dssp             TTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTSCB---CSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTT
T ss_pred             CCeEEEECCCCEEEECCccCcccCceEEEEEEEEeCCCCc---ccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCC
Confidence            4588888899999999999999999999999999998865   678899999999999999999986 899999999999


Q ss_pred             cEEEEEEEEeCCCC---CCceEEEEEecCC-----CCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCCCCcee
Q psy6838         174 TVVAALKAIDRDEG---QNSYVEYSIINSE-----ATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEPSKSSR  244 (442)
Q Consensus       174 ~~v~~v~a~D~D~~---~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~~~~~~  244 (442)
                      +.|+++.|+|+|.+   .|+.++|+|.++.     .+.|.|++.+|.|++. ++||||....|.|.|+|+|+|.|+++++
T Consensus       125 t~v~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t  204 (213)
T 3qrb_A          125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT  204 (213)
T ss_dssp             CEEEECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEE
T ss_pred             cEEEEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEE
Confidence            99999999999998   8899999998753     4689999999999997 7999999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy6838         245 TKFFIRLLD  253 (442)
Q Consensus       245 ~~v~I~V~d  253 (442)
                      ++|+|+|.|
T Consensus       205 ~~v~I~V~D  213 (213)
T 3qrb_A          205 AKAVITVKD  213 (213)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            999999986

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=6.8e-36  Score=267.60  Aligned_cols=193  Identities=30%  Similarity=0.442  Sum_probs=171.6

Q ss_pred             eeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838         163 ETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD  235 (442)
Q Consensus       163 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D  235 (442)
                      .+.|+||.+  .|+.|+++.| |.|.  ++.++|+|.++.     .++|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D   82 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS   82 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCceEEEEEEEEe
Confidence            678999998  6788999998 7774  777999999854     34899999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEE
Q psy6838         236 RGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQV  315 (442)
Q Consensus       236 ~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v  315 (442)
                      ++++++++.+.|+|.|.|+|||+|.|....|.                                +.|.|++++|+.|+++
T Consensus        83 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~En~~~gt~v~~v  130 (213)
T 3qrb_A           83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFE--------------------------------GSVAEGAVPGTSVMKV  130 (213)
T ss_dssp             TTSCBCSCCEEEEEEEECCSCCCCEESCSEEE--------------------------------EEEETTCCTTCEEEEC
T ss_pred             CCCCcccceEEEEEEEEEccCCCCccCCCceE--------------------------------EEEECCCCCCcEEEEE
Confidence            99988999999999999999999999776654                                4555666777777777


Q ss_pred             EEEeCCCC---CCeEEEEEEEeCC----CCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCCCceEEEEEEEE
Q psy6838         316 FTTDADEG---VNGVVTYSVVSDW----ANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFN  387 (442)
Q Consensus       316 ~a~D~D~~---~~~~i~y~l~~~~----~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~  387 (442)
                      .|+|+|.+   .|+.++|+|..++    ..+.|.|++.+|.|++. +.||||....|.|+|+|+|+|.|+++++++|+|+
T Consensus       131 ~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~  210 (213)
T 3qrb_A          131 SATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVIT  210 (213)
T ss_dssp             CEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEE
T ss_pred             EEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCceEEEEEEEEeCCCCCceEEEEEEEE
Confidence            78999998   8899999998664    45799999999999997 7999999999999999999999999999999999


Q ss_pred             Eee
Q psy6838         388 VVD  390 (442)
Q Consensus       388 V~d  390 (442)
                      |.|
T Consensus       211 V~D  213 (213)
T 3qrb_A          211 VKD  213 (213)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            987

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=3.9e-35  Score=260.17  Aligned_cols=190  Identities=30%  Similarity=0.473  Sum_probs=170.0

Q ss_pred             EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .++|+||.+.|  ..|+++. +|+|.|.+   +|+|..                                       ++.
T Consensus         6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~---------------------------------------~~~   42 (203)
T 3ppe_A            6 RMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEG---------------------------------------ESA   42 (203)
T ss_dssp             EEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEE---------------------------------------TTB
T ss_pred             cEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEec---------------------------------------CCC
Confidence            68999999998  8888888 99997654   666654                                       444


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||....|.|+|+|+|+++++  ++++++.|.|.|.|+|||+|.|... |.+.|+|++++|
T Consensus        43 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g  120 (203)
T 3ppe_A           43 NTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNR--SLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLG  120 (203)
T ss_dssp             TTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTTTE--ECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTT
T ss_pred             CCeEEEECCcCEEEECccccccccceEEEEEEEEECCCCC--cccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCC
Confidence            5678888889999999999999999999999999998752  2578899999999999999999977 899999999999


Q ss_pred             cEEEEEEEEeCC---CCCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeC-CCCCCceeEEEE
Q psy6838         174 TVVAALKAIDRD---EGQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDR-GEPSKSSRTKFF  248 (442)
Q Consensus       174 ~~v~~v~a~D~D---~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~-~~~~~~~~~~v~  248 (442)
                      +.|+++.|+|+|   .|.|+.++|+|.++. ..|.|+ .+|.|++. ++||||....|.|.|+|+|+ |.|+++++++|+
T Consensus       121 t~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~-~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~  198 (203)
T 3ppe_A          121 TSVTKVTAEDADDPTVAGHATVTYQIIKGN-EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVI  198 (203)
T ss_dssp             CEEEECCEECCSCTTSSSTTCEEEEEEEST-TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEE
T ss_pred             cEEEEEEEEcCCCcCCCCceEEEEEEeCCC-CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEE
Confidence            999999999999   477889999999886 589999 89999999 99999999999999999998 777899999999


Q ss_pred             EEEEe
Q psy6838         249 IRLLD  253 (442)
Q Consensus       249 I~V~d  253 (442)
                      |+|.|
T Consensus       199 I~V~D  203 (203)
T 3ppe_A          199 IRLTD  203 (203)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=5.6e-35  Score=259.16  Aligned_cols=190  Identities=32%  Similarity=0.410  Sum_probs=168.7

Q ss_pred             CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838         162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE  238 (442)
Q Consensus       162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~  238 (442)
                      ..+.|.||.+.|  ..++++. +|+|.+.+   +|+|.++. .++|.|++.+|.|++.++||||....|.|+|.|+|++.
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~   80 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRN   80 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCEEEEEEEEEETTT
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccccceEEEEEEEEECCC
Confidence            468899999988  8889998 99998876   99999876 55899999999999999999999999999999999987


Q ss_pred             C-CCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838         239 P-SKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT  317 (442)
Q Consensus       239 ~-~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a  317 (442)
                      | ++++.+.|+|.|.|+|||+|.|....|.                                +.|.|++++|+.|+++.|
T Consensus        81 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~--------------------------------~~v~E~~~~gt~v~~v~A  128 (203)
T 3ppe_A           81 NRSLEPPSKFIIKVSDINDNAPIFVQKIFN--------------------------------GSVPEMSRLGTSVTKVTA  128 (203)
T ss_dssp             TEECSCCEEEEEEEECCCCCCCEESCSEEE--------------------------------EEEETTCCTTCEEEECCE
T ss_pred             CCcccceEEEEEEEcCCCCCCCCccCCccE--------------------------------EEEeccCCCCcEEEEEEE
Confidence            6 6888999999999999999999877654                                455566667777777777


Q ss_pred             EeCC---CCCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEEC-CCCCceEEEEEEEEEee
Q psy6838         318 TDAD---EGVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDT-GKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       318 ~D~D---~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~-~~~~~~~~~~v~I~V~d  390 (442)
                      +|+|   .|.|+.++|+|..++  .+|.|+ .+|.|++. +.||||....|.|+|+|+|+ |.|+++++++|+|+|.|
T Consensus       129 ~D~D~~~~g~n~~i~Y~i~~~~--~~F~I~-~tG~i~~~~~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          129 EDADDPTVAGHATVTYQIIKGN--EYFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             ECCSCTTSSSTTCEEEEEEEST--TTEEEC-TTSEEEESCSCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             EcCCCcCCCCceEEEEEEeCCC--CcEEEe-CCeEEEECCcCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence            9999   477899999999764  599999 99999999 99999999999999999998 77889999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=3.5e-35  Score=263.92  Aligned_cols=195  Identities=28%  Similarity=0.405  Sum_probs=172.4

Q ss_pred             EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .++|+|+.++|  +.|+++.|.|.|.    .++|+|..+..                                   .++.
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~-----------------------------------~~~~   47 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGV-----------------------------------DQDP   47 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTT-----------------------------------TBSS
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCC-----------------------------------CCCC
Confidence            58999999998  8899999998774    56777754210                                   1234


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||....|.|+|+|+|.++++   +++++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus        48 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~g~~~---~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g  124 (218)
T 3k5r_A           48 KGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKT---LEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTG  124 (218)
T ss_dssp             TTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECSSSCE---EEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTT
T ss_pred             CCeEEEeCCceEEEECCcCCcccCCEEEEEEEEEECCCCc---eeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCC
Confidence            5789999899999999999999999999999999988764   789999999999999999999866 899999999999


Q ss_pred             cEEEEEEEEeCCC--CCCceEEEEEecCCC-----CCeEecCcceEEEEc---ccCCccc--ccEEEEEEEEEeCC--CC
Q psy6838         174 TVVAALKAIDRDE--GQNSYVEYSIINSEA-----TPFSLGPVDGLLRVA---QKLDREI--KSNYTLEIKAKDRG--EP  239 (442)
Q Consensus       174 ~~v~~v~a~D~D~--~~~~~~~y~i~~~~~-----~~F~id~~tG~i~~~---~~lD~e~--~~~~~l~V~a~D~~--~~  239 (442)
                      +.|+++.|+|+|.  +.|+.++|+|.++..     ++|.|++.+|.|++.   +.||||.  ...|.|.|+|+|+|  .|
T Consensus       125 t~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p  204 (218)
T 3k5r_A          125 TTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDV  204 (218)
T ss_dssp             CEEEECCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTT
T ss_pred             CEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCC
Confidence            9999999999999  678999999997653     579999999999987   6999999  67999999999999  88


Q ss_pred             CCceeEEEEEEEEe
Q psy6838         240 SKSSRTKFFIRLLD  253 (442)
Q Consensus       240 ~~~~~~~v~I~V~d  253 (442)
                      +++++++|+|+|.|
T Consensus       205 ~~sst~~v~I~V~D  218 (218)
T 3k5r_A          205 GLTGTATATIVIDD  218 (218)
T ss_dssp             TCEEEEEEEEEEEC
T ss_pred             CeeEEEEEEEEEEC
Confidence            99999999999986

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=3.5e-35  Score=263.90  Aligned_cols=193  Identities=26%  Similarity=0.418  Sum_probs=169.3

Q ss_pred             CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838         162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK  234 (442)
Q Consensus       162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~  234 (442)
                      ..+.|+||.+.|  +.++++.|.|.|.    .++|+|.+..     .++|.|++.+|.|++.++||||....|.|+|.|+
T Consensus         6 ~~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~   81 (218)
T 3k5r_A            6 SPILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT   81 (218)
T ss_dssp             CCEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             CcEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCEEEEEEEEE
Confidence            368899999988  8899999998875    4899997543     4789999999999999999999999999999999


Q ss_pred             eCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEE
Q psy6838         235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ  314 (442)
Q Consensus       235 D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~  314 (442)
                      |++++++++++.|+|.|.|+|||+|.|....|.+                                .|.|++++|+.|++
T Consensus        82 D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~gt~v~~  129 (218)
T 3k5r_A           82 DASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIG--------------------------------HVMEGSPTGTTVMR  129 (218)
T ss_dssp             CSSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEE--------------------------------EEETTCCTTCEEEE
T ss_pred             ECCCCceeeeEEEEEEEEeCCCCCCcccCCceEE--------------------------------EEECCCCCCCEEEE
Confidence            9999889999999999999999999997776554                                45566666677777


Q ss_pred             EEEEeCCC--CCCeEEEEEEEeCCCC----CCeEEeCCccEEEEc---ccCCCcc--CcEEEEEEEEEECC--CCCceEE
Q psy6838         315 VFTTDADE--GVNGVVTYSVVSDWAN----DVFSINPQSGIFTLT---AKLDYED--VHHYIFVVQAQDTG--KPMMSST  381 (442)
Q Consensus       315 v~a~D~D~--~~~~~i~y~l~~~~~~----~~f~id~~tG~l~~~---~~ld~e~--~~~~~l~V~a~D~~--~~~~~~~  381 (442)
                      +.|+|+|.  +.|+.++|+|.++...    ++|.|++.+|.|++.   +.||||.  ...|.|.|+|+|+|  .|+++++
T Consensus       130 v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst  209 (218)
T 3k5r_A          130 MTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGT  209 (218)
T ss_dssp             CCCSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEE
T ss_pred             EEEEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEE
Confidence            77799998  6799999999976543    689999999999987   6999999  67999999999999  7889999


Q ss_pred             EEEEEEEee
Q psy6838         382 VTVYFNVVD  390 (442)
Q Consensus       382 ~~v~I~V~d  390 (442)
                      ++|+|+|.|
T Consensus       210 ~~v~I~V~D  218 (218)
T 3k5r_A          210 ATATIVIDD  218 (218)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=1.2e-35  Score=264.67  Aligned_cols=193  Identities=32%  Similarity=0.476  Sum_probs=163.4

Q ss_pred             CeeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-
Q psy6838         162 NETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-  237 (442)
Q Consensus       162 ~~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~-  237 (442)
                      ..+.|.|+.+.+  +.++++ |+|+|.| ++.++|+|.++. .++|.|++.+|.|++.++||||....|.|.|.|+|++ 
T Consensus         5 ~~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~   82 (207)
T 3lnd_A            5 NQFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRT   82 (207)
T ss_dssp             CCEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSS
T ss_pred             cccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCC
Confidence            357899998855  588888 8999998 567999998776 3589999999999999999999999999999999987 


Q ss_pred             CCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEEEEE
Q psy6838         238 EPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFT  317 (442)
Q Consensus       238 ~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a  317 (442)
                      .+++++.+.|+|.|.|+|||+|.|....|.+                                .|.|+++.|+.++++.|
T Consensus        83 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~--------------------------------~v~E~~~~gt~v~~v~A  130 (207)
T 3lnd_A           83 GRPVEPESEFIIKIHDINDNEPIFTKDVYTA--------------------------------TVPEMADVGTFVVQVTA  130 (207)
T ss_dssp             CCCCSCCCCCEEEEECCSCCCCEESCSEEEE--------------------------------EEESSCCTTCEEEECCE
T ss_pred             CCccccEEEEEEEECccCCCCCccCCCceEE--------------------------------EEeCCCCCCCEEEEEEE
Confidence            4678889999999999999999998776554                                45566667777777777


Q ss_pred             EeCCC---CCCeEEEEEEEeCCCCCCeEEeCCccEEEEc-ccCCCccCcEEEEEEEEEECCCC--CceEEEEEEEEEee
Q psy6838         318 TDADE---GVNGVVTYSVVSDWANDVFSINPQSGIFTLT-AKLDYEDVHHYIFVVQAQDTGKP--MMSSTVTVYFNVVD  390 (442)
Q Consensus       318 ~D~D~---~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~-~~ld~e~~~~~~l~V~a~D~~~~--~~~~~~~v~I~V~d  390 (442)
                      +|+|.   |.|+.++|+|..+  ..+|.|++.+|.|++. +.||||....|.|+|+|+|+|.|  +++++++|+|+|.|
T Consensus       131 ~D~D~~~~g~n~~i~Y~i~~~--~~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          131 TDADDPTYGNSAKVVYSILQG--QPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             ECSSCTTSSSTTCCEEEEEES--GGGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EeCCCCCCCCCcEEEEEEcCC--CCCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            99998   7888999999965  3599999999999999 99999999999999999999876  79999999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=9.6e-36  Score=265.24  Aligned_cols=193  Identities=32%  Similarity=0.521  Sum_probs=164.4

Q ss_pred             EEEEecCCCCC--cEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCCC
Q psy6838          17 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDD   94 (442)
Q Consensus        17 ~~~v~E~~~~g--~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~~   94 (442)
                      .+.|+|+.+.|  +.|+++ |+|+|.| ++.++|+|..                                       ++.
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~---------------------------------------~~~   44 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSG---------------------------------------DGA   44 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCS---------------------------------------SSB
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEEC---------------------------------------CCC
Confidence            57899999965  588888 9999987 5567776643                                       333


Q ss_pred             CCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEeeCCCCCC
Q psy6838          95 EEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTIPENSPLN  173 (442)
Q Consensus        95 ~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v~E~~~~g  173 (442)
                      .++|.|++.+|.|++.++||||....|.|+|+|+|+++.+  ++++++.|.|+|.|+|||+|.|... |.+.|+|++++|
T Consensus        45 ~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~a~D~~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~g  122 (207)
T 3lnd_A           45 GDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGR--PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG  122 (207)
T ss_dssp             TTTEEECTTTCEEEECSCCCGGGCCEEEC----CBSSSCC--CCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTT
T ss_pred             CCeEEEECCceEEEECCCcCcccCCEEEEEEEEEECCCCC--ccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCC
Confidence            4578888889999999999999999999999999987422  2678889999999999999999976 899999999999


Q ss_pred             cEEEEEEEEeCCC---CCCceEEEEEecCCCCCeEecCcceEEEEc-ccCCcccccEEEEEEEEEeCCCC--CCceeEEE
Q psy6838         174 TVVAALKAIDRDE---GQNSYVEYSIINSEATPFSLGPVDGLLRVA-QKLDREIKSNYTLEIKAKDRGEP--SKSSRTKF  247 (442)
Q Consensus       174 ~~v~~v~a~D~D~---~~~~~~~y~i~~~~~~~F~id~~tG~i~~~-~~lD~e~~~~~~l~V~a~D~~~~--~~~~~~~v  247 (442)
                      +.|+++.|+|+|.   |.|+.++|+|.++. ..|.|++.+|.|++. ++||||....|.|.|+|+|+|.|  +++++++|
T Consensus       123 t~v~~v~A~D~D~~~~g~n~~i~Y~i~~~~-~~F~Id~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v  201 (207)
T 3lnd_A          123 TFVVQVTATDADDPTYGNSAKVVYSILQGQ-PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTV  201 (207)
T ss_dssp             CEEEECCEECSSCTTSSSTTCCEEEEEESG-GGEEECTTTCEEEECCSSCCC--CCEEEEEEEEESGGGCTTCBEEEEEE
T ss_pred             CEEEEEEEEeCCCCCCCCCcEEEEEEcCCC-CCEEEcCCCcEEEECcccCCcccCCEEEEEEEEEECCCCCCCcEeEEEE
Confidence            9999999999998   78889999999875 589999999999999 99999999999999999999876  78999999


Q ss_pred             EEEEEe
Q psy6838         248 FIRLLD  253 (442)
Q Consensus       248 ~I~V~d  253 (442)
                      +|+|.|
T Consensus       202 ~I~V~D  207 (207)
T 3lnd_A          202 NITLTD  207 (207)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999986

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=1.1e-30  Score=236.79  Aligned_cols=195  Identities=23%  Similarity=0.316  Sum_probs=157.3

Q ss_pred             eEEEEEecCCCCCcEEEEEEeee-CCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838          15 VYAFDVLEDLPRGSRVGQVFTTD-ADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD   93 (442)
Q Consensus        15 ~~~~~v~E~~~~g~~v~~~~a~D-~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~   93 (442)
                      .+.+.|+|++++|+.|..+.+.| .|.++++.++|+|..                                        .
T Consensus        21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~----------------------------------------~   60 (242)
T 4apx_B           21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKD----------------------------------------N   60 (242)
T ss_dssp             SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEES----------------------------------------C
T ss_pred             eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEec----------------------------------------C
Confidence            46789999999999998765554 445777778888754                                        1


Q ss_pred             CCCcEEEeCCccEEEEc---ccCCcccCcEEEEE---EEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC-CeeEe
Q psy6838          94 DEEIFTINPSNGTLSNL---KHLDRETKSSYNLV---VMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA-NETTI  166 (442)
Q Consensus        94 ~~~~F~i~~~~g~l~~~---~~lD~E~~~~~~l~---v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~-~~~~v  166 (442)
                      ...+|.|++.+|.+.+.   +.||||....|.+.   +.+.+....    ....+.|.|.|.|+|||+|.|... |.+.|
T Consensus        61 ~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~~~~~~----~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v  136 (242)
T 4apx_B           61 VDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVG----TVIYHEVRIVVRDRNDNSPTFKHESYYATV  136 (242)
T ss_dssp             GGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEEETTTC----CEEEEEEEEEEECCCCCCCEESSSCEEEEE
T ss_pred             CCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeECCCCC----eEEEEEEEEEEEeCCCCCCcccceeeeeEe
Confidence            23456666677776653   67999987665544   444554322    467788999999999999999977 89999


Q ss_pred             eCCCCCCcEEEE-----EEEEeCCCCCCceEEEEEecCCC-----CCeEecC-cceEEEEcccCCcccccEEEEEEEEEe
Q psy6838         167 PENSPLNTVVAA-----LKAIDRDEGQNSYVEYSIINSEA-----TPFSLGP-VDGLLRVAQKLDREIKSNYTLEIKAKD  235 (442)
Q Consensus       167 ~E~~~~g~~v~~-----v~a~D~D~~~~~~~~y~i~~~~~-----~~F~id~-~tG~i~~~~~lD~e~~~~~~l~V~a~D  235 (442)
                      +|++++|+.|.+     +.|+|+|.|.|+.++|+|..+..     +.|.|+. .+|.|+++++||||....|.|.|+|+|
T Consensus       137 ~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D  216 (242)
T 4apx_B          137 NELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND  216 (242)
T ss_dssp             ETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             eeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEE
Confidence            999999999976     78999999999999999998763     3599995 599999999999999999999999999


Q ss_pred             CCCCC---CceeEEEEEEEEe
Q psy6838         236 RGEPS---KSSRTKFFIRLLD  253 (442)
Q Consensus       236 ~~~~~---~~~~~~v~I~V~d  253 (442)
                      +|.|+   +++.+.|+|.|.-
T Consensus       217 ~G~~~~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          217 RAQNLNERRTTTTTLTVDLEH  237 (242)
T ss_dssp             CCSSGGGCCEEEEEEEEEEEC
T ss_pred             CCcCchhcccCCceEEEEEee
Confidence            99874   6778888888864

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.97  E-value=2.2e-30  Score=234.73  Aligned_cols=201  Identities=26%  Similarity=0.373  Sum_probs=160.7

Q ss_pred             CeeEeeCCCCCCcEEEEEEE-EeCCCCCCceEEEEEecCCCCCeEecCcceEEEEc---ccCCcccccEEEE---EEEEE
Q psy6838         162 NETTIPENSPLNTVVAALKA-IDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVA---QKLDREIKSNYTL---EIKAK  234 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a-~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~---~~lD~e~~~~~~l---~V~a~  234 (442)
                      +.+.|+|++++|+.+..+.+ .|.|.+.++.++|+|.+....+|.|++.+|.+.+.   +.||||....|.+   .+.|.
T Consensus        22 ~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~~~v~~~  101 (242)
T 4apx_B           22 TIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCV  101 (242)
T ss_dssp             EEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTCCCEEEEEEEEE
T ss_pred             EEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCceEEEEEEEEeE
Confidence            56789999999999877554 45556788889999998877899999999999885   6799998766554   44445


Q ss_pred             eCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeeccccccccceEEEEeecCCCCCccCCcceeEEEecCCCCCcEEEE
Q psy6838         235 DRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ  314 (442)
Q Consensus       235 D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v~e~~~~g~~v~~v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~  314 (442)
                      +.+ .+..+.+.|+|.|.|+|||+|.|....|.+.|+|+.++|+.|+++..                           +.
T Consensus       102 ~~~-~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~---------------------------~~  153 (242)
T 4apx_B          102 NKK-VGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS---------------------------GD  153 (242)
T ss_dssp             ETT-TCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTT---------------------------TT
T ss_pred             CCC-CCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeee---------------------------cc
Confidence            543 24566788999999999999999888877776666666555543211                           12


Q ss_pred             EEEEeCCCCCCeEEEEEEEeCCCC----CCeEEeC-CccEEEEcccCCCccCcEEEEEEEEEECCCCC---ceEEEEEEE
Q psy6838         315 VFTTDADEGVNGVVTYSVVSDWAN----DVFSINP-QSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPM---MSSTVTVYF  386 (442)
Q Consensus       315 v~a~D~D~~~~~~i~y~l~~~~~~----~~f~id~-~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~---~~~~~~v~I  386 (442)
                      +.|+|+|.|.|+.++|+|..++..    +.|.|+. .+|.|++++.||||....|.|+|+|+|+|.|+   +++.+.|+|
T Consensus       154 v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtV  233 (242)
T 4apx_B          154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTV  233 (242)
T ss_dssp             TSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEE
T ss_pred             cccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCEEEEEEEEEECCcCchhcccCCceEEE
Confidence            556999999999999999966443    3699995 59999999999999999999999999999875   778899999


Q ss_pred             EEee
Q psy6838         387 NVVD  390 (442)
Q Consensus       387 ~V~d  390 (442)
                      +|.-
T Consensus       234 nVe~  237 (242)
T 4apx_B          234 DLEH  237 (242)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            8864

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=5.3e-28  Score=195.32  Aligned_cols=116  Identities=34%  Similarity=0.532  Sum_probs=103.6

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS   80 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~   80 (442)
                      |.|+|||+|.|....|.++|+|++++|+.|+++.|+|+|.|.|+.++|+|..+..                         
T Consensus         4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~-------------------------   58 (119)
T 2yst_A            4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATE-------------------------   58 (119)
T ss_dssp             CCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCT-------------------------
T ss_pred             EecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCC-------------------------
Confidence            7899999999999999999999999999999999999999988888888865211                         


Q ss_pred             CCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838          81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP  156 (442)
Q Consensus        81 ~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P  156 (442)
                                  ...++|.|++.+|.|+++++||||....|.|+|+|+|+++++   ++++++|.|+|.|+|||+|
T Consensus        59 ------------~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~p~---~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           59 ------------SVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP---KTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             ------------THHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEECCSBTTB---CCEEEEEEEEEECSTTCCC
T ss_pred             ------------ccccEEEEeCCceEEEECccCCcccCCEEEEEEEEEECCCCC---cEEEEEEEEEEEeccCCCC
Confidence                        013578888889999999999999999999999999999865   6899999999999999998

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=1.8e-26  Score=186.32  Aligned_cols=114  Identities=34%  Similarity=0.534  Sum_probs=99.5

Q ss_pred             EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCC--CCCeEEeCCccEEEEcccCCCcc
Q psy6838         283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA--NDVFSINPQSGIFTLTAKLDYED  360 (442)
Q Consensus       283 v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~--~~~f~id~~tG~l~~~~~ld~e~  360 (442)
                      |.++||++|.|.+..|.+.|.|++++|+.|+++.|+|+|.|.|+.++|+|.++..  ..+|.|++.+|.|++++.||||.
T Consensus         4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~E~   83 (119)
T 2yst_A            4 GSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREE   83 (119)
T ss_dssp             CCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCTTT
T ss_pred             EecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCccc
Confidence            3455555566666667777888888888888888899999999999999986532  36899999999999999999999


Q ss_pred             CcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCC
Q psy6838         361 VHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP  396 (442)
Q Consensus       361 ~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P  396 (442)
                      ...|.|+|+|+|+|.|+++++++|+|+|.|+|||+|
T Consensus        84 ~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           84 VNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             CSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             CCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            999999999999999999999999999999999998

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=1.2e-25  Score=179.67  Aligned_cols=111  Identities=32%  Similarity=0.469  Sum_probs=97.8

Q ss_pred             CCcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838           1 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS   80 (442)
Q Consensus         1 V~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~   80 (442)
                      |.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.|.|+.++|+|..+.                          
T Consensus         4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~--------------------------   57 (114)
T 2ee0_A            4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQV--------------------------   57 (114)
T ss_dssp             CCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSC--------------------------
T ss_pred             EeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCC--------------------------
Confidence            789999999999999999999999999999999999999998888888885421                          


Q ss_pred             CCCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEecc
Q psy6838          81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVN  152 (442)
Q Consensus        81 ~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvN  152 (442)
                                .+...++|.|++.+|.|++.++||||....|.|+|+|+|++++     +++++|.|+|.|+|
T Consensus        58 ----------~~~~~~~F~Id~~tG~I~~~~~LD~E~~~~y~l~V~A~D~g~~-----~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           58 ----------APATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSST-----PARATVTINVTDVN  114 (114)
T ss_dssp             ----------CHHHHHHEEECTTTCEEEECSCCCTTTCSEEEEEEEEESSSSS-----CEEEEEEEEEECCC
T ss_pred             ----------CCCccceEEEeCCeeEEEECccCCcccCcEEEEEEEEEECCCC-----ceEEEEEEEEEECC
Confidence                      0123457888888999999999999999999999999999875     37789999999997

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=4.1e-24  Score=170.81  Aligned_cols=108  Identities=33%  Similarity=0.442  Sum_probs=92.0

Q ss_pred             EeecCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeC---CCCCCeEEeCCccEEEEcccCCCc
Q psy6838         283 VSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD---WANDVFSINPQSGIFTLTAKLDYE  359 (442)
Q Consensus       283 v~~~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~---~~~~~f~id~~tG~l~~~~~ld~e  359 (442)
                      |.++||++|.|.+..|.+.|.|++++|+.|+++.|+|+|.|.|+.++|+|.+.   +...+|.|++.+|.|+++++||||
T Consensus         4 V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD~E   83 (114)
T 2ee0_A            4 GSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDRE   83 (114)
T ss_dssp             CCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCCTT
T ss_pred             EeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCCcc
Confidence            34455555566666677777888888888888888999999999999999852   245689999999999999999999


Q ss_pred             cCcEEEEEEEEEECCCCCceEEEEEEEEEeeCC
Q psy6838         360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLN  392 (442)
Q Consensus       360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvN  392 (442)
                      ....|.|+|+|+|+|.|+  ++++|+|+|.|+|
T Consensus        84 ~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           84 ETAIHKVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             TCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             cCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            999999999999999865  7899999999998

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=1.8e-23  Score=169.20  Aligned_cols=113  Identities=21%  Similarity=0.341  Sum_probs=104.2

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCc
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVH  362 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~  362 (442)
                      +.+.|.|..+.|.+.+.|+++.|+.|+++. +|.|.+.|+.++|+|.++    +..++|.|++.+|.|++++.||||...
T Consensus         6 ~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~   84 (123)
T 2yqg_A            6 SGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETP   84 (123)
T ss_dssp             SCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBS
T ss_pred             cccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCc
Confidence            467788888888899999999999999999 699999899999999975    345799999999999999999999999


Q ss_pred             EEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCC
Q psy6838         363 HYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP  400 (442)
Q Consensus       363 ~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~  400 (442)
                      .|.|+|.|+|+|.|++++++.|.|+|.|+|||+|.|.+
T Consensus        85 ~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           85 FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             EEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCC
T ss_pred             eEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCC
Confidence            99999999999999999999999999999999999975

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.8e-22  Score=163.33  Aligned_cols=118  Identities=23%  Similarity=0.298  Sum_probs=102.6

Q ss_pred             CCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCC
Q psy6838           4 TNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNG   83 (442)
Q Consensus         4 vNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~   83 (442)
                      .+.+.|.|....|.+.+.|++++|+.|+++. +|+|.|.|+.++|+|..+..                            
T Consensus         5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~----------------------------   55 (123)
T 2yqg_A            5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGI----------------------------   55 (123)
T ss_dssp             SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTT----------------------------
T ss_pred             ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCC----------------------------
Confidence            5789999999999999999999999999999 69998888888888876310                            


Q ss_pred             cEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeecc
Q psy6838          84 RLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFIT  160 (442)
Q Consensus        84 ~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~  160 (442)
                             .....++|.|++.+|.|++.++||||....|.|+|.|+|.++++   +++++.|.|.|.|+|||+|.|..
T Consensus        56 -------~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~p~---~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           56 -------TEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNN---VEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             -------TBSSCSSEEEETTTTEEEECSCCBTTTBSEEEEEEEEECTTCCE---EEEEECCEEEEECTTCCCCCCCC
T ss_pred             -------CCCcCCCEEEeCCcCEEEECcccCcccCceEEEEEEEEECCCCc---eEEEEEEEEEEEEcCCCCCEeCC
Confidence                   00234688888899999999999999999999999999998764   78999999999999999999975

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.85  E-value=3e-21  Score=152.95  Aligned_cols=98  Identities=26%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             eeEEEecCCCCCcE--EEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEE
Q psy6838         298 YAFDVLEDLPRGSR--VGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ  371 (442)
Q Consensus       298 ~~~~v~E~~~~g~~--v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~  371 (442)
                      |.+.|.||++.|+.  ++++   |.|.+.|+.++|+|.++    +..+.|.|++.+|.|+++++||||....|.|+|.|+
T Consensus         7 ~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   83 (110)
T 1ncg_A            7 PPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV   83 (110)
T ss_dssp             CCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             eeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEE
Confidence            57889999999995  5554   67777899999999963    356799999999999999999999999999999999


Q ss_pred             ECCCCCceEEEEEEEEEeeCCCCCCcc
Q psy6838         372 DTGKPMMSSTVTVYFNVVDLNDNPPLF  398 (442)
Q Consensus       372 D~~~~~~~~~~~v~I~V~dvNd~~P~f  398 (442)
                      |+|.|+++++++|.|+|.|+|||+|.|
T Consensus        84 D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           84 DINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             CTTSCBCSCCEEEEEEEC---------
T ss_pred             ECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            999999999999999999999999987

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.82  E-value=3.4e-20  Score=146.87  Aligned_cols=97  Identities=27%  Similarity=0.429  Sum_probs=79.6

Q ss_pred             CeeEeeCCCCCCcE--EEEEEEEeCCCCCCceEEEEEecC-----CCCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838         162 NETTIPENSPLNTV--VAALKAIDRDEGQNSYVEYSIINS-----EATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK  234 (442)
Q Consensus       162 ~~~~v~E~~~~g~~--v~~v~a~D~D~~~~~~~~y~i~~~-----~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~  234 (442)
                      +.++|+||+++|+.  ++++   |.|.+.|+.++|+|.++     ..+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus         7 ~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   83 (110)
T 1ncg_A            7 PPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV   83 (110)
T ss_dssp             CCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             eeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCeEEEEEEEE
Confidence            57899999999994  5555   77878899999999974     25689999999999999999999999999999999


Q ss_pred             eCCCCCCceeEEEEEEEEeCCCCCCee
Q psy6838         235 DRGEPSKSSRTKFFIRLLDENDNNPIF  261 (442)
Q Consensus       235 D~~~~~~~~~~~v~I~V~d~nd~~P~f  261 (442)
                      |+|.|++++++.|+|.|.|+|||+|.|
T Consensus        84 D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           84 DINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             CTTSCBCSCCEEEEEEEC---------
T ss_pred             ECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            999999999999999999999999987

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=3.2e-20  Score=150.07  Aligned_cols=107  Identities=23%  Similarity=0.348  Sum_probs=93.1

Q ss_pred             CcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEE---EEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cEEEEE
Q psy6838         295 EPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVV---TYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HHYIFV  367 (442)
Q Consensus       295 ~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i---~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~~~l~  367 (442)
                      ...+.+.|.|++++|+.|+++ |+|.|.+. +.+   +|+|.+++...+|.|++.||.|+++++||||..    ..|.|+
T Consensus        10 ~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~   87 (125)
T 1wyj_A           10 SATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILH   87 (125)
T ss_dssp             CCCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBC
T ss_pred             CceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEE
Confidence            445778999999999999999 89998764 334   899997777789999999999999999999999    999999


Q ss_pred             EEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCCCeeE
Q psy6838         368 VQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIP  406 (442)
Q Consensus       368 V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~  406 (442)
                      |+|.+. .| . ..++|.|+|.|+|||+|.|.++.|.++
T Consensus        88 v~a~~~-~p-~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           88 FQVLLK-SP-V-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             CEEEET-TT-T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEEEC-CC-C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            999984 33 3 488999999999999999999888764

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.77  E-value=1.6e-18  Score=133.94  Aligned_cols=91  Identities=27%  Similarity=0.410  Sum_probs=83.8

Q ss_pred             eeEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECC-
Q psy6838         298 YAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTG-  374 (442)
Q Consensus       298 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~-  374 (442)
                      ..+.|.||.+  .|+.|+++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||||....|.|+|.|+|+| 
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~   83 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRT   83 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCC
Confidence            4678999976  689999999 999999 99999999976666789999999999999999999999999999999999 


Q ss_pred             CCCceEEEEEEEEEee
Q psy6838         375 KPMMSSTVTVYFNVVD  390 (442)
Q Consensus       375 ~~~~~~~~~v~I~V~d  390 (442)
                      +|++++.++|.|+|.|
T Consensus        84 ~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           84 GRPMEPESEFIIKIQD   99 (99)
T ss_dssp             CCBSSCCEEEEEEEEC
T ss_pred             CCCcceeEEEEEEEeC
Confidence            5889999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.77  E-value=1.9e-18  Score=133.33  Aligned_cols=91  Identities=27%  Similarity=0.376  Sum_probs=81.4

Q ss_pred             eeEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC
Q psy6838         298 YAFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK  375 (442)
Q Consensus       298 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~  375 (442)
                      +.+.|.||.+  .|+.|+++. +|+|.| |+.++|+|.++...+.|.|++.+|.|++.++||||....|.|+|+|+|+|.
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~   82 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET   82 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence            4678899985  899999997 999999 999999999765667899999999999999999999999999999999997


Q ss_pred             -CCceEEEEEEEEEee
Q psy6838         376 -PMMSSTVTVYFNVVD  390 (442)
Q Consensus       376 -~~~~~~~~v~I~V~d  390 (442)
                       |+++++++|.|+|.|
T Consensus        83 ~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           83 NKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             CCBSSCCEEEEEEECC
T ss_pred             CCCcceeEEEEEEEEC
Confidence             779999999999986

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.74  E-value=1.2e-17  Score=128.96  Aligned_cols=90  Identities=28%  Similarity=0.428  Sum_probs=82.8

Q ss_pred             CeeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC-
Q psy6838         162 NETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG-  237 (442)
Q Consensus       162 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~-  237 (442)
                      ..+.|+||.+  .|+.|+++. +|+|.| |+.++|+|.++. .+.|.|++.+|.|++.++||||....|.|+|.|+|+| 
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~G~   83 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRT   83 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCeEEEEEEEEECCC
Confidence            4678999976  689999999 999999 999999998865 3689999999999999999999999999999999999 


Q ss_pred             CCCCceeEEEEEEEEe
Q psy6838         238 EPSKSSRTKFFIRLLD  253 (442)
Q Consensus       238 ~~~~~~~~~v~I~V~d  253 (442)
                      +|++++.+.|.|.|.|
T Consensus        84 ~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           84 GRPMEPESEFIIKIQD   99 (99)
T ss_dssp             CCBSSCCEEEEEEEEC
T ss_pred             CCCcceeEEEEEEEeC
Confidence            5899999999999986

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=4.7e-19  Score=143.19  Aligned_cols=104  Identities=22%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             CeeEeeCCCCCCcEEEEEEEEeCCCCCCceE---EEEEecCC-CCCeEecCcceEEEEcccCCcccc----cEEEEEEEE
Q psy6838         162 NETTIPENSPLNTVVAALKAIDRDEGQNSYV---EYSIINSE-ATPFSLGPVDGLLRVAQKLDREIK----SNYTLEIKA  233 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~---~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~----~~~~l~V~a  233 (442)
                      +.++|+|+.++|+.|+++ |+|.|.+.+ .+   +|+|.++. ..+|.|++.+|.|++.++||||..    ..|.|.|.|
T Consensus        13 ~~~~V~E~~~~Gt~V~~v-a~D~d~~~~-~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v~a   90 (125)
T 1wyj_A           13 ITYSVLEETDRGSLVGNL-AKDLGLSLR-ELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQV   90 (125)
T ss_dssp             CCEEECSSCCTTCEEEES-TTTTTCCHH-HHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCCEE
T ss_pred             EEEEEECCCCCCCEEEEE-EecCCCCCC-ceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEEEE
Confidence            678999999999999999 999887643 34   89998754 678999999999999999999999    999999999


Q ss_pred             EeCCCCCCceeEEEEEEEEeCCCCCCeeeccceeeec
Q psy6838         234 KDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSASV  270 (442)
Q Consensus       234 ~D~~~~~~~~~~~v~I~V~d~nd~~P~f~~~~~~~~v  270 (442)
                      .+..  +. ..++|.|+|.|+|||+|.|....|.+++
T Consensus        91 ~~~~--p~-~~~~V~I~V~DvNDN~P~F~~~~y~vs~  124 (125)
T 1wyj_A           91 LLKS--PV-QFIQGEIQLQDVNDHAPEFMEDESGPSS  124 (125)
T ss_dssp             EETT--TT-EEECCCEEECCCCCCCCCCCCCCCCCCC
T ss_pred             EECC--CC-eEEEEEEEEEEccCCCCcCCCcEEEEec
Confidence            9853  33 5789999999999999999999887653

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.73  E-value=1.1e-17  Score=129.62  Aligned_cols=89  Identities=22%  Similarity=0.297  Sum_probs=81.5

Q ss_pred             eeEEEecCCCC--CcEEEEEEEEeCCCCCCeEEEEEEEe----CCCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEE
Q psy6838         298 YAFDVLEDLPR--GSRVGQVFTTDADEGVNGVVTYSVVS----DWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQ  371 (442)
Q Consensus       298 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~y~l~~----~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~  371 (442)
                      ..+.|.||.+.  |+.|+++.|+|+|.    .++|+|.+    ++..+.|.|++.+|.|++.++||||....|.|+|.|+
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   80 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT   80 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEE
Confidence            35789999999  99999999999996    69999985    3445799999999999999999999999999999999


Q ss_pred             ECCCCCceEEEEEEEEEee
Q psy6838         372 DTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       372 D~~~~~~~~~~~v~I~V~d  390 (442)
                      |+|+|++++.++|.|+|.|
T Consensus        81 D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           81 DENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             CTTCCEEEEEEEEEEEEEC
T ss_pred             ECCCCceeeEEEEEEEEEC
Confidence            9999999999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.73  E-value=1.6e-17  Score=128.11  Aligned_cols=90  Identities=27%  Similarity=0.416  Sum_probs=80.6

Q ss_pred             CeeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCC
Q psy6838         162 NETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGE  238 (442)
Q Consensus       162 ~~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~  238 (442)
                      +.+.|+||.+  .|+.|+++. +|+|.| |+.++|+|.+.. .+.|.|++.+|.|++.++||||....|.|+|.|+|+|.
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D~g~   82 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFET   82 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETTT
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCeEEEEEEEEECCC
Confidence            5678999995  899999997 999999 999999998875 45799999999999999999999999999999999997


Q ss_pred             -CCCceeEEEEEEEEe
Q psy6838         239 -PSKSSRTKFFIRLLD  253 (442)
Q Consensus       239 -~~~~~~~~v~I~V~d  253 (442)
                       |++++.+.|.|.|.|
T Consensus        83 ~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           83 NKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             CCBSSCCEEEEEEECC
T ss_pred             CCCcceeEEEEEEEEC
Confidence             789999999999876

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.72  E-value=3.6e-17  Score=126.86  Aligned_cols=88  Identities=23%  Similarity=0.354  Sum_probs=80.6

Q ss_pred             eEEEecCCCC--CcEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838         299 AFDVLEDLPR--GSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD  372 (442)
Q Consensus       299 ~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D  372 (442)
                      .+.|.||.+.  |+.|++|.|+|+|.    .++|+|.+.    +..+.|.|++.||.|++.++||||....|.|+|+|+|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D   82 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD   82 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEC
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEEE
Confidence            5789999998  89999999999996    589999853    3457999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEEEee
Q psy6838         373 TGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       373 ~~~~~~~~~~~v~I~V~d  390 (442)
                      +|+|++++.++|.|+|.|
T Consensus        83 ~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           83 ASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             TTCCEEEEEEEEEEEEEC
T ss_pred             CCCCcccceEEEEEEEEC
Confidence            999999999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.72  E-value=5.5e-17  Score=125.66  Aligned_cols=88  Identities=23%  Similarity=0.359  Sum_probs=80.3

Q ss_pred             eEEEecCCCCC--cEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838         299 AFDVLEDLPRG--SRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD  372 (442)
Q Consensus       299 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D  372 (442)
                      .+.|.||.+.|  +.|++|.|+|+|.    .++|+|.+.    +..+.|.|++.+|.|++.++||||....|.|+|+|+|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   81 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD   81 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence            46889999986  8899999999996    699999853    3447999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEEEee
Q psy6838         373 TGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       373 ~~~~~~~~~~~v~I~V~d  390 (442)
                      +|+|++++.++|.|+|.|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           82 LSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             TTSCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeeEEEEEEEEC
Confidence            999999999999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.70  E-value=4.3e-17  Score=127.54  Aligned_cols=90  Identities=21%  Similarity=0.304  Sum_probs=79.5

Q ss_pred             eEEEecCCC--CCcEEEEEEEEeCCCCCCeEEEEEEEeCCC----CCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEE
Q psy6838         299 AFDVLEDLP--RGSRVGQVFTTDADEGVNGVVTYSVVSDWA----NDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQD  372 (442)
Q Consensus       299 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~----~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D  372 (442)
                      .+.|.||.+  .|+.|+++.| |.  +.|+.++|+|.+++.    .+.|.|++.+|.|++.++||||....|.|+|+|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d~--g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D   86 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-NK--DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS   86 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-GG--GGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-CC--CCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence            467889998  5789999998 33  568999999997543    46899999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEEEeeC
Q psy6838         373 TGKPMMSSTVTVYFNVVDL  391 (442)
Q Consensus       373 ~~~~~~~~~~~v~I~V~dv  391 (442)
                      +|.|+++++++|.|+|.|+
T Consensus        87 ~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           87 SNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             TTSCBSSCCEEEEEEEEC-
T ss_pred             CCCCceeeEEEEEEEEEeC
Confidence            9999999999999999986

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.69  E-value=1.1e-16  Score=123.92  Aligned_cols=88  Identities=22%  Similarity=0.339  Sum_probs=80.8

Q ss_pred             CeeEeeCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838         162 NETTIPENSPL--NTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK  234 (442)
Q Consensus       162 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~  234 (442)
                      ..+.|+||.++  |+.|+++.|+|+|.    .++|+|.+..     .+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   80 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETT   80 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCceEEEEEEEE
Confidence            46789999999  99999999999997    4999998632     4689999999999999999999999999999999


Q ss_pred             eCCCCCCceeEEEEEEEEe
Q psy6838         235 DRGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       235 D~~~~~~~~~~~v~I~V~d  253 (442)
                      |+|+|++++.+.|+|.|.|
T Consensus        81 D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           81 DENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             CTTCCEEEEEEEEEEEEEC
T ss_pred             ECCCCceeeEEEEEEEEEC
Confidence            9999999999999999986

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.68  E-value=1.4e-16  Score=124.59  Aligned_cols=89  Identities=25%  Similarity=0.355  Sum_probs=79.7

Q ss_pred             eeEeeCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838         163 ETTIPENSP--LNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD  235 (442)
Q Consensus       163 ~~~v~E~~~--~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D  235 (442)
                      .+.|+||.+  .|+.|+++.| |  .+.|+.++|+|.++.     .+.|.|++.+|.|++.++||||....|.|+|.|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D   86 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVS   86 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEC
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEE
Confidence            578999998  5889999999 3  357889999998865     25799999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEEEEEeC
Q psy6838         236 RGEPSKSSRTKFFIRLLDE  254 (442)
Q Consensus       236 ~~~~~~~~~~~v~I~V~d~  254 (442)
                      +|.|++++.+.|.|.|.|+
T Consensus        87 ~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           87 SNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             TTSCBSSCCEEEEEEEEC-
T ss_pred             CCCCceeeEEEEEEEEEeC
Confidence            9999999999999999985

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.67  E-value=2.7e-16  Score=121.92  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=80.4

Q ss_pred             CeeEeeCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEE
Q psy6838         162 NETTIPENSPL--NTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAK  234 (442)
Q Consensus       162 ~~~~v~E~~~~--g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~  234 (442)
                      ..+.|+||.+.  |+.|++|.|+|+|.    .++|+|.+..     .+.|.|++.+|.|++.++||||....|.|.|.|+
T Consensus         6 ~~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~   81 (100)
T 3k6f_A            6 SPILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETT   81 (100)
T ss_dssp             CCEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCEEEEEEEEE
Confidence            36789999998  89999999999997    3899998632     4689999999999999999999999999999999


Q ss_pred             eCCCCCCceeEEEEEEEEe
Q psy6838         235 DRGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       235 D~~~~~~~~~~~v~I~V~d  253 (442)
                      |+|.|++++.++|.|.|.|
T Consensus        82 D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           82 DASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             CTTCCEEEEEEEEEEEEEC
T ss_pred             ECCCCcccceEEEEEEEEC
Confidence            9999999999999999986

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.67  E-value=3.7e-16  Score=120.96  Aligned_cols=87  Identities=23%  Similarity=0.340  Sum_probs=80.0

Q ss_pred             eeEeeCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEe
Q psy6838         163 ETTIPENSPLN--TVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKD  235 (442)
Q Consensus       163 ~~~v~E~~~~g--~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D  235 (442)
                      .+.|+||.+.|  +.|++|.|+|+|.    .++|+|.+..     .+.|.|++.+|.|++.++||||....|.|.|.|+|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v~A~D   81 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD   81 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCEEEEEEEEEE
Confidence            57899999987  8999999999997    4999998642     36899999999999999999999999999999999


Q ss_pred             CCCCCCceeEEEEEEEEe
Q psy6838         236 RGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       236 ~~~~~~~~~~~v~I~V~d  253 (442)
                      +|+|++++.++|.|.|.|
T Consensus        82 ~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           82 LSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             TTSCEEEEEEEEEEEEEC
T ss_pred             CCCCceeeeEEEEEEEEC
Confidence            999999999999999986

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.49  E-value=5.4e-15  Score=115.15  Aligned_cols=93  Identities=24%  Similarity=0.392  Sum_probs=75.9

Q ss_pred             cceeEEEecCCCCCcEEEEEEEEeCCCCCC--eEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCc------EEEEE
Q psy6838         296 PVYAFDVLEDLPRGSRVGQVFTTDADEGVN--GVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVH------HYIFV  367 (442)
Q Consensus       296 ~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~--~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~------~~~l~  367 (442)
                      ..+.++|.|++++|+.|+++ |.|.|...+  ..++|+|.+++...+|.|++.||.|+++++||||...      .|.+.
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~   81 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE   81 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence            45678999999999999999 999886422  3578999877778899999999999999999999752      45555


Q ss_pred             EEEEECCCCCceEEEEEEEEEeeCCCC
Q psy6838         368 VQAQDTGKPMMSSTVTVYFNVVDLNDN  394 (442)
Q Consensus       368 V~a~D~~~~~~~~~~~v~I~V~dvNd~  394 (442)
                      |.+  . .| + ..+.|.|+|.|+|||
T Consensus        82 v~~--~-~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           82 VIV--D-RP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEE--T-TT-T-EEEEEEEEEECCSCC
T ss_pred             EEE--C-CC-C-EEEEEEEEEEEcCCC
Confidence            554  2 33 3 488999999999997

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.44  E-value=1.7e-14  Score=112.33  Aligned_cols=97  Identities=23%  Similarity=0.364  Sum_probs=68.4

Q ss_pred             CeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcEEEEEEeCC
Q psy6838          14 PVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGD   93 (442)
Q Consensus        14 ~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i~y~i~~~~   93 (442)
                      ..+..+|+|++++|+.|+++ |.|+|.+.+.                                     ...++|+|..++
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~-------------------------------------~~~~~y~i~~~~   44 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTE-------------------------------------LVPRLFRVASKD   44 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHH-------------------------------------HTTTTBCCBCSS
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcc-------------------------------------cccEEEEEEeCC
Confidence            45788999999999999999 9998853210                                     012344444455


Q ss_pred             CCCcEEEeCCccEEEEcccCCcccC----cEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCC
Q psy6838          94 DEEIFTINPSNGTLSNLKHLDRETK----SSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDN  154 (442)
Q Consensus        94 ~~~~F~i~~~~g~l~~~~~lD~E~~----~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~  154 (442)
                      ..++|.|++.+|.|++.+.||||+.    ..|.+.+.+... .|    + ..+.|.|.|.|+|||
T Consensus        45 ~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~v~~~-~p----~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           45 RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVD-RP----L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             CSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEEEEET-TT----T-EEEEEEEEEECCSCC
T ss_pred             CccEEEEECCeEEEEECCcCccccccCCCCcEEEEEEEEEC-CC----C-EEEEEEEEEEEcCCC
Confidence            5677888888888888888888875    233444444432 22    2 378999999999997

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=95.75  E-value=0.18  Score=43.03  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             cCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccCCeeEeeCCC-C--CC-cEEEEEEEEeCCCCCCceE
Q psy6838         117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITANETTIPENS-P--LN-TVVAALKAIDRDEGQNSYV  192 (442)
Q Consensus       117 ~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~~~~~v~E~~-~--~g-~~v~~v~a~D~D~~~~~~~  192 (442)
                      ....|+|+++|+|..|.    .+....+.|+|.+  ..+|....    ..+.+. .  .| .+-....|.|.|.. -.++
T Consensus        59 ~~G~htlta~A~D~aGn----~s~s~~v~vtV~~--~~~Ptv~i----tsP~~g~~~~~~~~vtl~~~AsD~~g~-V~~V  127 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGR----RIESPVTPVLVKV--IVKPTVKL----TAPKSNVVAYGNEFLKITATASDSDGK-ISRV  127 (190)
T ss_dssp             CSEEEEEEEEEEETTSC----EEECCCEEEEEEC--CCCCEEEE----EECCTTCCCBTTSEEEEEEEEECSSSC-EEEE
T ss_pred             CCccEEEEEEEEECCCC----EeeecceeEEecc--CCCCceee----cCCCCCcEEecCCeEEEEEEEECCCCc-EEEE
Confidence            35689999999999874    2333457777776  44786532    222221 1  23 44556777776542 2335


Q ss_pred             EEEEecCCCCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEEEe
Q psy6838         193 EYSIINSEATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       193 ~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  253 (442)
                      .|.+.+.   ...-+. ++-.......   ....|.|+++|+|..+. .+....|+|+|.+
T Consensus       128 e~~~dg~---~v~t~t-~~~y~~~~~~---~~G~~tl~a~A~D~aGn-~s~s~~vtvtv~~  180 (190)
T 3pdd_A          128 DFLVDGE---VIGSDR-EAPYEYEWKA---VEGNHEISVIAYDDDDA-ASTPDSVKIFVKQ  180 (190)
T ss_dssp             EEEETTE---EEEEEC-SSSEEEEEEC---CSEEEEEEEEEEETTCC-BCCCEEEEEEEBC
T ss_pred             EEEECCE---EEeccc-CCCEEEEEec---CCeeEEEEEEEEECCCC-EEecceEEEEECC
Confidence            5555321   111111 1111111111   46789999999998753 3455667777653

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=94.37  E-value=0.26  Score=40.22  Aligned_cols=80  Identities=19%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEEEEE
Q psy6838         289 NSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVV  368 (442)
Q Consensus       289 ~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V  368 (442)
                      ..|-|.+..|...+.-...+|..+++|.-.|...  +..+.|...   ....|.|+.+ |.|++++.+..-. ..-.|.|
T Consensus        32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~ss---Dp~dFkV~~D-GtVya~r~v~L~~-~~~~F~V  104 (159)
T 1op4_A           32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS---EPADFKVDED-GTVYAVRSFPLTA-EQAKFLI  104 (159)
T ss_dssp             CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC---CSSEEEEETT-TEEEEESCCSCSS-SCEEEEE
T ss_pred             ccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEcC---CCCCeEEeCC-CcEEEecceeecC-CCcEEEE
Confidence            3456666677666666777788888887788863  445667543   2237999987 9999998875433 3348899


Q ss_pred             EEEECCC
Q psy6838         369 QAQDTGK  375 (442)
Q Consensus       369 ~a~D~~~  375 (442)
                      .|.|...
T Consensus       105 ~a~D~~t  111 (159)
T 1op4_A          105 YAQDKET  111 (159)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCC
Confidence            9999544

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=94.12  E-value=1.9  Score=36.53  Aligned_cols=30  Identities=20%  Similarity=0.018  Sum_probs=21.7

Q ss_pred             cCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838         360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  390 (442)
                      ..+.|+|+++|+|..+- .+....|.|+|.+
T Consensus       151 ~~G~~tl~a~A~D~aGn-~s~s~~vtvtv~~  180 (190)
T 3pdd_A          151 VEGNHEISVIAYDDDDA-ASTPDSVKIFVKQ  180 (190)
T ss_dssp             CSEEEEEEEEEEETTCC-BCCCEEEEEEEBC
T ss_pred             CCeeEEEEEEEEECCCC-EEecceEEEEECC
Confidence            56799999999997663 3345667777654

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=93.67  E-value=1.6  Score=39.91  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             EEEEEEEEEC-CCCCceEEEEEEEEEeeCCCCCCccCCCCCeeEEecCCCCCceEEEEEEEeCCCC--eeEEEEeeCC
Q psy6838         364 YIFVVQAQDT-GKPMMSSTVTVYFNVVDLNDNPPLFDPMPPNIPVYENVTLGTGLASVHAVDLDSG--KLPFLLPIGD  438 (442)
Q Consensus       364 ~~l~V~a~D~-~~~~~~~~~~v~I~V~dvNd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~--~~~y~i~~~~  438 (442)
                      -+|.|..+.. ++..+......+|+|.| ||.+|.|........|.|+.  |...+.|.-.-.-.+  .+.|+...|.
T Consensus        91 EtF~v~Ls~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~~g~vtV~~~T~dGT  165 (298)
T 3rb5_A           91 ECFYIRLFNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGARGTVIVPYWTENDT  165 (298)
T ss_dssp             EEEEEEEECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCCCSCEEEEEEEEEC-
T ss_pred             EEEEEEEeCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecCCCCEEEEEEecCCc
Confidence            3455555553 22223333455666666 46689876666667899983  666556555544333  7888766653

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=92.69  E-value=5.8  Score=36.14  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             cCCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC
Q psy6838         152 NDNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE  200 (442)
Q Consensus       152 Nd~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~  200 (442)
                      +|++..|... ....+.|+.  |+.-..|.-.. +......+.|...++.
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GT   52 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGT   52 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESS
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCc
Confidence            3555666554 567899986  55544554332 3334456888877765

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=92.13  E-value=0.6  Score=35.14  Aligned_cols=45  Identities=13%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             EEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCC
Q psy6838         107 LSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAP  156 (442)
Q Consensus       107 l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P  156 (442)
                      |.+....|..+...|.++..++|..|     ..++.+.+|+|.+..+..|
T Consensus        47 I~V~g~Vdt~k~G~Y~VtY~VtDs~G-----n~~t~trtVtV~~~~e~~~   91 (103)
T 2kpn_A           47 IKVDGEVDTTKAGTYVLTYTVTDSKG-----HEVTAKQTVTVKVREEVKN   91 (103)
T ss_dssp             CEEESCCCSSSCEEEEEEEEEECTTS-----CEEEEEEEEEEECSSCCCC
T ss_pred             EEEeCcccCCCceEEEEEEEEEcCCC-----CEEEEEEEEEEeCCCcccC
Confidence            33345677778889999999999887     4678888999988666444

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=89.70  E-value=1.7  Score=41.64  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             EeCCCCCCeEEEEEEEeCCCC----CCeEEe-CCccEEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEe
Q psy6838         318 TDADEGVNGVVTYSVVSDWAN----DVFSIN-PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVV  389 (442)
Q Consensus       318 ~D~D~~~~~~i~y~l~~~~~~----~~f~id-~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~  389 (442)
                      +|+|   ++.++|+-..-...    ....|. .++..++.+.+-. +....|.|.++++|.+.|.+++..+|+|+|.
T Consensus       365 sDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV~  437 (437)
T 2yhg_A          365 SDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINVQ  437 (437)
T ss_dssp             BCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEEC
T ss_pred             eCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEeC
Confidence            4887   56788877633222    255664 4445676665543 4567899999999999888999999999883

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.12  E-value=2.9  Score=31.27  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=27.6

Q ss_pred             cCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCC
Q psy6838         360 DVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLND  393 (442)
Q Consensus       360 ~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd  393 (442)
                      ....|.|+++++|..+  .+++.+++|+|...+.
T Consensus        67 ~~G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           67 QVGTYVFTLTVKDERN--LQSQSSVNVIVKEESG   98 (102)
T ss_dssp             CSSEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred             CCeEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence            4679999999999876  7889999999998765

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=87.01  E-value=5.7  Score=32.32  Aligned_cols=80  Identities=19%  Similarity=0.297  Sum_probs=57.1

Q ss_pred             CCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCCcE
Q psy6838           6 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNGRL   85 (442)
Q Consensus         6 Dn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~~i   85 (442)
                      -+-|-|..+.|...++-+...|..+++|.-.|...  +..+.|..                                   
T Consensus        31 ~C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~s-----------------------------------   73 (159)
T 1op4_A           31 LCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYES-----------------------------------   73 (159)
T ss_dssp             CCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEEC-----------------------------------
T ss_pred             cccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEEc-----------------------------------
Confidence            35789999999888889999999999999998863  33454443                                   


Q ss_pred             EEEEEeCCCCC-cEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCC
Q psy6838          86 EYSIVSGDDEE-IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAK  132 (442)
Q Consensus        86 ~y~i~~~~~~~-~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~  132 (442)
                              .+. .|.|+ ..|.|.+.+++-.-. ..-.+.|.|.|...
T Consensus        74 --------sDp~dFkV~-~DGtVya~r~v~L~~-~~~~F~V~a~D~~t  111 (159)
T 1op4_A           74 --------SEPADFKVD-EDGTVYAVRSFPLTA-EQAKFLIYAQDKET  111 (159)
T ss_dssp             --------CCSSEEEEE-TTTEEEEESCCSCSS-SCEEEEEEEEETTT
T ss_pred             --------CCCCCeEEe-CCCcEEEecceeecC-CCcEEEEEEEcCCC
Confidence                    123 67777 578888888764322 22378889999554

>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}

Probab=85.50  E-value=2.1  Score=32.10  Aligned_cols=47  Identities=11%  Similarity=0.088  Sum_probs=37.0

Q ss_pred             EEEEcccCCCccCcEEEEEEEEEECCCCCceEEEEEEEEEeeCCCCCCc
Q psy6838         349 IFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPL  397 (442)
Q Consensus       349 ~l~~~~~ld~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~  397 (442)
                      .|.+....|....+.|.++..++|..+  ..++++.+|+|.+..+..|.
T Consensus        46 ~I~V~g~Vdt~k~G~Y~VtY~VtDs~G--n~~t~trtVtV~~~~e~~~~   92 (103)
T 2kpn_A           46 KIKVDGEVDTTKAGTYVLTYTVTDSKG--HEVTAKQTVTVKVREEVKND   92 (103)
T ss_dssp             GCEEESCCCSSSCEEEEEEEEEECTTS--CEEEEEEEEEEECSSCCCCC
T ss_pred             eEEEeCcccCCCceEEEEEEEEEcCCC--CEEEEEEEEEEeCCCcccCC
Confidence            344456788888899999999999877  67888999999887664443

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=84.99  E-value=4.2  Score=38.92  Aligned_cols=66  Identities=15%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             EeCCCCCCceEEEEEecC--C---CCCeEec-CcceEEEEcccCCcccccEEEEEEEEEeCCCCCCceeEEEEEEE
Q psy6838         182 IDRDEGQNSYVEYSIINS--E---ATPFSLG-PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRL  251 (442)
Q Consensus       182 ~D~D~~~~~~~~y~i~~~--~---~~~F~id-~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V  251 (442)
                      +|+|...   ++|+-.--  .   .....|. ..+..+.+..+-+ +....|+|.++++|.+.|++++..+|.|+|
T Consensus       365 sDPDGD~---LtY~W~q~~g~g~~~~~vtls~~~~~~~sft~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          365 SDPDGDS---LNYSWSHYGEADSYSGSVSISNSSSASANVQIPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             BCTTCCC---EEEEEEECTTTSSCCSCCCEETTTSSEEEEECCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             eCCCCCe---EEEEEEEeCCCCccccceEeecCCCceEEEEeCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            4777433   77766433  2   1245563 3445666665544 456899999999999999999999998887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	3e-17
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	8e-14
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	6e-13
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	2e-15
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	8e-13
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	8e-10
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	6e-14
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-11
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	1e-08
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-13
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	9e-11
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	4e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	5e-13
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	5e-11
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	3e-10
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	6e-13
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	5e-12
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-08
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	1e-12
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	2e-10
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	7e-08
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	1e-12
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	7e-12
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	4e-08
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-10
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	6e-10
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-09
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	2e-08
d1l3wa5	107	b.1.6.1 (A:434-540) C-cadherin ectodomain {African	7e-06

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 75.0 bits (183), Expect = 3e-17
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 288 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 347
           + +P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDN 59

Query: 348 GIFTLTAKLDYEDVHH----YIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           GI T    LD E  +     Y  ++   D G  + + T T+  +V+D
Sbjct: 60  GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 65.4 bits (158), Expect = 8e-14
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 153 DNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 211
           + AP F+ A     + E+      + +L A D D+ Q   + Y I N  A   ++   +G
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60

Query: 212 LLRVAQKLDREIK----SNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           ++     LDRE +    + YT+ +   D G    +      + +LD
Sbjct: 61  IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 62.7 bits (151), Expect = 6e-13
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 39/146 (26%)

Query: 6   DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQS 65
           + +P F   V   DV EDL RG ++  +   D D+     ++Y + +D A    ++N  +
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR-WLTVNKDN 59

Query: 66  GIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVV 125
           GI T    LD E                                    +    ++Y +++
Sbjct: 60  GIVTGNGNLDRES-----------------------------------EYVKNNTYTVIM 84

Query: 126 MATDMAKPPQKRLSSTTQVSIVIRDV 151
           + TD         + T  + + + DV
Sbjct: 85  LVTDDGVSV---GTGTGTLILHVLDV 107

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 2e-15
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 291 PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN----DVFSINPQ 346
           P+ S  +      E+   G     +    +++   G V YS+    A+     VF I  +
Sbjct: 1   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59

Query: 347 SGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           +G   +T  LD E +  Y     A  +    +   + +   V D
Sbjct: 60  TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 8e-13
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT-----PFSLGPVDGLLRVAQKL 219
           + PEN         L  I  ++ +   V YSI    A       F +    G L+V + L
Sbjct: 11  SCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69

Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDE 254
           DRE  + YTL   A      +     +  I + D+
Sbjct: 70  DRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 104

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 8e-10
 Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 39/142 (27%)

Query: 9   PVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIF 68
           P+ S  +      E+   G     +    +++   G V YS+    A+            
Sbjct: 1   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGAD------------ 47

Query: 69  TLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMAT 128
                                       +F I    G L   + LDRE  ++Y L   A 
Sbjct: 48  -----------------------TPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 84

Query: 129 DMAKPPQKRLSSTTQVSIVIRD 150
                    +    ++ I + D
Sbjct: 85  SSNGNA---VEDPMEILITVTD 103

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 65.2 bits (158), Expect = 6e-14
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAK 355
             V E+   G    ++    +++     V YS+           VF I  ++G   +T  
Sbjct: 7   IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP 65

Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           LD E+   Y+    A       +   + +  NV+D
Sbjct: 66  LDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 219
            + EN         L  I  ++ + + V YSI    A       F +    G + V + L
Sbjct: 8   KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66

Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           DRE    Y L   A            +  I ++D
Sbjct: 67  DREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 78  DVSDNGRLEYSIVSGDDEE----IFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKP 133
           +     ++ YSI     +     +F I    G +   + LDRE    Y L   A      
Sbjct: 27  NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS 86

Query: 134 PQKRLSSTTQVSIVIRD 150
           P   +    +++I + D
Sbjct: 87  P---VEEPMEITINVID 100

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 9/133 (6%)

Query: 285 DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 344
           +       F E VY+  + +D+  G  +  V  ++ +         S  +D+        
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADF------KV 58

Query: 345 PQSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDP-MPP 403
            + G                 F++ AQD         V V  +        P+ +P    
Sbjct: 59  DEDGTVYAVRSFPLTA-EQAKFLIYAQDKE-TQEKWQVAVNLSREPTLTEEPMKEPHEIE 116

Query: 404 NIPVYENVTLGTG 416
            I     +   +G
Sbjct: 117 EIVFPRQLAKHSG 129

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 9e-11
 Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 9/135 (6%)

Query: 150 DVNDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGP 208
           ++      F        +P++      +  +K  + +  +    E S             
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDE---- 60

Query: 209 VDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNPIFDSKSYSA 268
            DG +   +      +      I A+D+    K       +         P+ +      
Sbjct: 61  -DGTVYAVRSFPLTAE-QAKFLIYAQDKETQEKWQVA-VNLSREPTLTEEPMKEPHEIEE 117

Query: 269 -SVPENISVGATVLQ 282
              P  ++  +  LQ
Sbjct: 118 IVFPRQLAKHSGALQ 132

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 17/174 (9%), Positives = 40/174 (22%), Gaps = 52/174 (29%)

Query: 3   DTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSIN 62
           +       F E VY+  + +D+  G  +  V  ++ +         S  +D+        
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADF-------- 56

Query: 63  PQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYN 122
                                                    +GT+  ++      +    
Sbjct: 57  -------------------------------------KVDEDGTVYAVRSFPLTAE-QAK 78

Query: 123 LVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITAN--ETTIPENSPLNT 174
            ++ A D     +        V++         P        E   P     ++
Sbjct: 79  FLIYAQDKETQEK----WQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHS 128

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 63.1 bits (152), Expect = 5e-13
 Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 24/137 (17%)

Query: 254 ENDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVG 313
           +NDN P F    +  SV E +  G  V+ VS T+++  + S        +        + 
Sbjct: 1   QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60

Query: 314 QVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDT 373
            +FT + +                           I  +   LD E    Y   VQA D 
Sbjct: 61  NLFTINRE------------------------TGVISLIGTGLDREKFPEYTLTVQATDL 96

Query: 374 GKPMMSSTVTVYFNVVD 390
               +S        + D
Sbjct: 97  EGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATPFSLG 207
           NDN P+F       ++ E     T V A+ A D D+     N  + YSI+  +       
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 208 ------PVDGLLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
                     +  +   LDRE    YTL ++A D      S   K  I++ D
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 42/150 (28%)

Query: 5   NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG---VVTYSVVSDWANDVFSI 61
           NDN P F++ V+   V E +  G++V  V  TD D+ ++    V++YS++     +    
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP- 60

Query: 62  NPQSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKH-LDRETKSS 120
                                              +FTIN   G +S +   LDRE    
Sbjct: 61  ----------------------------------NLFTINRETGVISLIGTGLDREKFPE 86

Query: 121 YNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           Y L V ATD+       LS   +  I I D
Sbjct: 87  YTLTVQATDLEGAG---LSVEGKAIIQITD 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 63.1 bits (152), Expect = 6e-13
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA-DEGVNGVVTYSVVSDWANDVFSI-- 343
           NDN+P+F    Y   V E+   G  V ++  TD    G         +       F+I  
Sbjct: 2   NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60

Query: 344 NPQSGIFTLTAK--LDYEDVHHYIFVVQAQDT---GKPMMSSTVTVYFNVVD 390
           +P+S    LT    LD+E    Y+  +  ++      P+ +ST TV   V D
Sbjct: 61  DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 37/148 (25%)

Query: 5   NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDA-DEGVNGVVTYSVVSDWANDVFSINP 63
           NDN+P+F    Y   V E+   G  V ++  TD    G         +       F+I  
Sbjct: 2   NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT- 59

Query: 64  QSGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNL 123
                                                  + G L+  K LD E +  Y L
Sbjct: 60  ----------------------------------TDPESNQGILTTAKGLDFELRKQYVL 85

Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRDV 151
            +   +         +ST  V++ + DV
Sbjct: 86  QITVENAEPFSVPLPTSTATVTVTVEDV 113

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 11/112 (9%)

Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEAT------PF 204
           NDNAP F        +PEN      V  L   D D       +                 
Sbjct: 2   NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60

Query: 205 SLGPVDGLLRVAQKLDREIKSNYTLEIKAKD---RGEPSKSSRTKFFIRLLD 253
                 G+L  A+ LD E++  Y L+I  ++      P  +S     + + D
Sbjct: 61  DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWAN----DVFSINPQSGIFTLTAK 355
            ++ E+   G    ++    +    N  + YSV    A+     +F INP SG  ++T  
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67

Query: 356 LDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD 390
           LD E +  +     A D     + + + +  NV+D
Sbjct: 68  LDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 165 TIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP-----FSLGPVDGLLRVAQKL 219
            +PENS        L  I     +N  + YS+    A       F + P+ G L V + L
Sbjct: 10  NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68

Query: 220 DREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
           DRE+ + + L   A D       +     I ++D
Sbjct: 69  DRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 39/133 (29%)

Query: 18  FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYE 77
            ++ E+   G    ++    +    N  + YSV    A+                     
Sbjct: 9   INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGAD--------------------- 46

Query: 78  DVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKR 137
                              IF INP +G LS  K LDRE  + ++L   A D+       
Sbjct: 47  --------------QPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQ--- 89

Query: 138 LSSTTQVSIVIRD 150
           + +   + I + D
Sbjct: 90  VENPIDIVINVID 102

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 1e-12
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG--VNGVVTYSVVSD----WANDV 340
           NDN P F   V+   V E    G+ V  V   DAD+   +NG++ Y +VS      + ++
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 341 FSINPQSG-IFTLTAKLDYEDVHHYIFVVQAQDTGKP---MMSSTVTVYFNVVD 390
           F+IN ++G I T+ A LD E V  Y  ++QA D        +S+T T    V D
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 7e-12
 Identities = 35/147 (23%), Positives = 47/147 (31%), Gaps = 34/147 (23%)

Query: 5   NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
           NDN P F   V+   V E    G+ V                        A D    N  
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMT--------------------VTAIDADDPNAL 40

Query: 65  SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLD-RETKSSYNL 123
           +G+                R+     S     +FTIN   G +  +     RE    Y L
Sbjct: 41  NGMLR-------------YRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTL 87

Query: 124 VVMATDMAKPPQKRLSSTTQVSIVIRD 150
           ++ ATDM   P   LS+T    I + D
Sbjct: 88  IIQATDMEGNPTYGLSNTATAVITVTD 114

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATP------- 203
           NDN PEF+      ++PE S   T V  + AID D+                P       
Sbjct: 1   NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60

Query: 204 FSLGPVDGLLRVAQKL-DREIKSNYTLEIKAKDRGEP---SKSSRTKFFIRLLD 253
           F++    G +       DRE    YTL I+A D         S+     I + D
Sbjct: 61  FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 1e-10
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 34/141 (24%)

Query: 255 NDNNPIFDSKSYSASVPENISVGATVLQVSDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQ 314
           NDN P F  + +  SV E    G +V++VS T+ +                         
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD----------------------- 37

Query: 315 VFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSG-IFTLTAKLDYEDVHHYIFVVQ 369
                     N  + Y++VS        ++F++N  +G I  LT+ LD E    Y  VVQ
Sbjct: 38  ------VNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQ 91

Query: 370 AQDTGKPMMSSTVTVYFNVVD 390
           A D     +S+T      V D
Sbjct: 92  AADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 6e-10
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 152 NDNAPEFITAN-ETTIPENSPLNTVVAALKAIDRDEG---QNSYVEYSIINSEATP---- 203
           NDN PEF     E ++ E +   T V  + A D D+     N+ + Y+I++ +       
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60

Query: 204 -FSLGPVDGLLRVAQKLD-REIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLD 253
            F++    G++ V      RE    YTL ++A D      S+  K  I + D
Sbjct: 61  MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-09
 Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 44/151 (29%)

Query: 5   NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQ 64
           NDN P F++ V+   V E    G+ V +V  TDAD+ VN                     
Sbjct: 1   NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--------------------- 39

Query: 65  SGIFTLTAKLDYEDVSDNGRLEYSIVSGDDE----EIFTINPSNGTLSNLKHL-DRETKS 119
                          + N  + Y+IVS D E     +FT+N   G +S L    DRE+  
Sbjct: 40  ---------------TYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 84

Query: 120 SYNLVVMATDMAKPPQKRLSSTTQVSIVIRD 150
           +Y LVV A D+       LS+T +  I ++D
Sbjct: 85  TYTLVVQAADLQGEG---LSTTAKAVITVKD 112

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.1 bits (118), Expect = 2e-08
 Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 8/111 (7%)

Query: 287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVV-SDWANDVFSINP 345
           NDN PV S  V+   + +  P       +  +DAD   N       +         +   
Sbjct: 1   NDNGPVPSPRVF--TMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55

Query: 346 QSGIFTLTAKLDYEDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVDLNDNPP 396
             G   L +         Y   V   D       + V     V        
Sbjct: 56  SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNA--TVCSCEGKAI 104

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 42.8 bits (99), Expect = 7e-06
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 152 NDNAPEFITANETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDG 211
           NDN P   +    T+ + +P   V+    A D       Y       S+ T  +     G
Sbjct: 1   NDNGPVP-SPRVFTMCDQNPEPQVLTISDA-DIPPNTYPYKVSLSHGSDLTWKAELDSKG 58

Query: 212 LLRVAQKLDREIKSNYTLEIKAKDRGEPSKSSRTKFFIRLLDENDNNP 259
              +     +  K +Y++ +   D     +   T     +        
Sbjct: 59  TSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.85
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.84
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.83
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.82
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.82
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.82
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.81
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.77
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.73
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.73
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.68
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.62
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.6
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.59
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.58
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.56
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.56
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.55
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.51
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	94.07
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	93.73

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.9e-21  Score=151.06  Aligned_cols=108  Identities=37%  Similarity=0.554  Sum_probs=90.6

Q ss_pred             CCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCC---CcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccC
Q psy6838           5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGV---NGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD   81 (442)
Q Consensus         5 NDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~---~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~   81 (442)
                      |||+|.|....|.+.|+|++++|+.|+++.|+|+|.|.   |+.++|+|..+..                          
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~--------------------------   54 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP--------------------------   54 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEES--------------------------
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCc--------------------------
Confidence            99999999999999999999999999999999999763   4566666654211                          


Q ss_pred             CCcEEEEEEeCCCCCcEEEeCCccEEEE-cccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEe
Q psy6838          82 NGRLEYSIVSGDDEEIFTINPSNGTLSN-LKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD  150 (442)
Q Consensus        82 ~~~i~y~i~~~~~~~~F~i~~~~g~l~~-~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~d  150 (442)
                               ......+|.|++.+|.|++ .+.||||....|.|+|+|+|.++++   ++++++|.|.|.|
T Consensus        55 ---------~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~a~D~g~~~---~~~~~~v~I~V~D  112 (112)
T d1edha2          55 ---------ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG---LSTTAKAVITVKD  112 (112)
T ss_dssp             ---------CCSCSCSEEECTTTCEEEECSSCCCTTTCCEEEEEEEEETGGGTS---CEEEEEEEEEEEC
T ss_pred             ---------cccceeEEEEecccceEEEEecccccccCcEEEEEEEEEECCCCc---cEEEEEEEEEEEC
Confidence                     1123467999989999986 4679999999999999999998775   7899999999987

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.84  E-value=2.8e-21  Score=152.62  Aligned_cols=109  Identities=37%  Similarity=0.526  Sum_probs=91.2

Q ss_pred             CCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCC---CCcEEEEEEEeCCCCCcEEEcCCccEEEEeeeccccccc
Q psy6838           4 TNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVS   80 (442)
Q Consensus         4 vNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~---~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~   80 (442)
                      .|||+|.|....|.+.|+|++++|+.|+++.|+|+|.+   .|+.+.|+|..+...                        
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~------------------------   56 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPE------------------------   56 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSC------------------------
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCC------------------------
Confidence            49999999999999999999999999999999999976   355666766553110                        


Q ss_pred             CCCcEEEEEEeCCCCCcEEEeCCccEEEEc-ccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEe
Q psy6838          81 DNGRLEYSIVSGDDEEIFTINPSNGTLSNL-KHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD  150 (442)
Q Consensus        81 ~~~~i~y~i~~~~~~~~F~i~~~~g~l~~~-~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~d  150 (442)
                                 .....+|.|++.+|.|++. +.||||....|.|+|+|+|.++++   ++++++|.|+|.|
T Consensus        57 -----------~~~~~~F~i~~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~~~~~---~~~~~~v~I~V~D  113 (113)
T d1l3wa2          57 -----------EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAG---LSVEGKAIIQITD  113 (113)
T ss_dssp             -----------CSCSCSEEECTTTCEEEECSCCCCTTTCCEEEEEEEEEHHHHTS---CEEECCEEEEEEC
T ss_pred             -----------ccccceeeeeecceeEEEeccccCcccCCEEEEEEEEEECCCCC---cEEEEEEEEEEEC
Confidence                       1123678998899999875 679999999999999999988765   7899999999987

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.7e-21  Score=150.13  Aligned_cols=111  Identities=37%  Similarity=0.528  Sum_probs=90.6

Q ss_pred             CCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCC--CCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCC
Q psy6838           5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDN   82 (442)
Q Consensus         5 NDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~--~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~   82 (442)
                      |||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.  +.|+.++|+|.++..                           
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~---------------------------   53 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAP---------------------------   53 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEES---------------------------
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCc---------------------------
Confidence            999999999999999999999999999999999995  557778888765311                           


Q ss_pred             CcEEEEEEeCCCCCcEEEeCCccEE-EEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEe
Q psy6838          83 GRLEYSIVSGDDEEIFTINPSNGTL-SNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRD  150 (442)
Q Consensus        83 ~~i~y~i~~~~~~~~F~i~~~~g~l-~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~d  150 (442)
                              .+....+|.|++.+|.+ .+.++||||....|.|+|+|+|.++++...++++++|.|.|.|
T Consensus        54 --------~~~~~~~F~i~~~tG~i~~~~~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          54 --------STPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             --------CCSCSCCEEECSSSCEEEECSSCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             --------CCCccceEEecCccceEEEeccccccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence                    11234678898889975 5678899999999999999999877655557888899988876

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.82  E-value=1.1e-20  Score=147.42  Aligned_cols=103  Identities=26%  Similarity=0.412  Sum_probs=92.9

Q ss_pred             CCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccC----cE
Q psy6838         288 DNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDV----HH  363 (442)
Q Consensus       288 ~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~----~~  363 (442)
                      |++|.|.+..|.+.|.|+.++|+.|+++.|.|+|.+.++.++|+|.+ +..++|.|++.+|.|++++.||||..    ..
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~-~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~   79 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNT   79 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECC-CSSCCCEEETTTTEEEECSCCCTTSSSCCSSC
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecC-CCcccceeccccceEEEccccChhhccccCCe
Confidence            56788888888888888999999999999999999999999999974 56789999999999999999999953    57


Q ss_pred             EEEEEEEEECCCCCceEEEEEEEEEeeC
Q psy6838         364 YIFVVQAQDTGKPMMSSTVTVYFNVVDL  391 (442)
Q Consensus       364 ~~l~V~a~D~~~~~~~~~~~v~I~V~dv  391 (442)
                      |.|.|.|+|.|.|+++++++|.|+|.||
T Consensus        80 y~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          80 YTVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             CEEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             EEEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            9999999999999999999999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.82  E-value=1.7e-20  Score=148.07  Aligned_cols=104  Identities=33%  Similarity=0.528  Sum_probs=92.2

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCC---CCeEEEEEEEeCCC----CCCeEEeCCccEEEEc-ccCCC
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDWA----NDVFSINPQSGIFTLT-AKLDY  358 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~i~y~l~~~~~----~~~f~id~~tG~l~~~-~~ld~  358 (442)
                      ||++|.|....|.+.|.|+++.|+.|+++.|.|+|.+   .|+.+.|+|..+..    ..+|.|++.+|.|++. +.|||
T Consensus         2 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD~   81 (113)
T d1l3wa2           2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDR   81 (113)
T ss_dssp             SCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCCT
T ss_pred             CCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccCc
Confidence            7788888888888889999999999999999999975   46789999986543    3689999999999985 57999


Q ss_pred             ccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838         359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       359 e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  390 (442)
                      |....|.|.|+|+|.++|+++++++|.|+|.|
T Consensus        82 E~~~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          82 EKFPEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             TTCCEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             ccCCEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            99999999999999999999999999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.3e-20  Score=145.52  Aligned_cols=104  Identities=35%  Similarity=0.519  Sum_probs=92.1

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCC---CCeEEEEEEEeCC----CCCCeEEeCCccEEEE-cccCCC
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEG---VNGVVTYSVVSDW----ANDVFSINPQSGIFTL-TAKLDY  358 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~---~~~~i~y~l~~~~----~~~~f~id~~tG~l~~-~~~ld~  358 (442)
                      ||++|.|....|.+.|.|++++|+.|+++.|+|+|.+   .++.++|+|..+.    ...+|.|++.+|.|++ .+.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            6788888888888899999999999999999999975   4678999998653    3468999999999986 567999


Q ss_pred             ccCcEEEEEEEEEECCCCCceEEEEEEEEEee
Q psy6838         359 EDVHHYIFVVQAQDTGKPMMSSTVTVYFNVVD  390 (442)
Q Consensus       359 e~~~~~~l~V~a~D~~~~~~~~~~~v~I~V~d  390 (442)
                      |....|.|+|+|+|+|.|+++++++|.|+|.|
T Consensus        81 E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             ccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            99999999999999999999999999999987

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.81  E-value=2.9e-20  Score=145.01  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=94.9

Q ss_pred             CCCCeeccC-CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCCCCeEecCcceEEEEcccCCccc----ccEE
Q psy6838         153 DNAPEFITA-NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSEATPFSLGPVDGLLRVAQKLDREI----KSNY  227 (442)
Q Consensus       153 d~~P~f~~~-~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~~~~F~id~~tG~i~~~~~lD~e~----~~~~  227 (442)
                      ||+|.|... +.+.|+|+.++|+.|+++.|+|+|.+.++.++|+|.++..++|.|++.+|.|++++.||||.    ...|
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y   80 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY   80 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhccccCCeE
Confidence            689999877 88999999999999999999999999999999999887778999999999999999999995    3679


Q ss_pred             EEEEEEEeCCCCCCceeEEEEEEEEeC
Q psy6838         228 TLEIKAKDRGEPSKSSRTKFFIRLLDE  254 (442)
Q Consensus       228 ~l~V~a~D~~~~~~~~~~~v~I~V~d~  254 (442)
                      .|.|.|+|.|.|+++++++|.|.|.||
T Consensus        81 ~l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          81 TVIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             EEEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            999999999999999999999999886

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.6e-19  Score=145.40  Aligned_cols=125  Identities=14%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             CcCCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcEEEEEEEeCCCCCcEEEcCCccEEEEeeecccccccC
Q psy6838           2 SDTNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSD   81 (442)
Q Consensus         2 ~DvNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~   81 (442)
                      -|+|++.|.|.+..|.+.|+|+.++|+.|+++.|+|.|.  ++.+.|++.+                             
T Consensus         4 ~~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~~-----------------------------   52 (136)
T d1op4a_           4 GEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESSE-----------------------------   52 (136)
T ss_dssp             CCCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECCC-----------------------------
T ss_pred             cCCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceecccc-----------------------------
Confidence            379999999999999999999999999999999999995  4556776532                             


Q ss_pred             CCcEEEEEEeCCCCCcEEEeCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCeeccC
Q psy6838          82 NGRLEYSIVSGDDEEIFTINPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEFITA  161 (442)
Q Consensus        82 ~~~i~y~i~~~~~~~~F~i~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f~~~  161 (442)
                                   ...|.|++ +|.|.+.+.||||.. .|.|+|+|+|.+++    ..+.+.|.|.|.|.|++.|.|...
T Consensus        53 -------------~~~F~i~~-~G~I~~~~~ld~e~~-~y~l~V~A~D~g~~----~~~~t~V~i~v~d~nd~~p~~~~~  113 (136)
T d1op4a_          53 -------------PADFKVDE-DGTVYAVRSFPLTAE-QAKFLIYAQDKETQ----EKWQVAVNLSREPTLTEEPMKEPH  113 (136)
T ss_dssp             -------------SSEEEEET-TTEEEEESCCSCSSS-CEEEEEEEEETTTT----EEEEEEEEECCCCCCCCCCSSCCC
T ss_pred             -------------ceeeeccc-cEEEEEecccCcccc-eEEEEEEEEecCCc----ceeeeEEEEEEcccCCCCCcccCC
Confidence                         34688885 699999999999975 69999999999875    356788999999999999999655


Q ss_pred             --CeeEeeCCCCCCcEE
Q psy6838         162 --NETTIPENSPLNTVV  176 (442)
Q Consensus       162 --~~~~v~E~~~~g~~v  176 (442)
                        +...++|+.+.|..+
T Consensus       114 ~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_         114 EIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             CSCCCSSCCCCCCCCSC
T ss_pred             CCceEEccCcCCCCCCc
Confidence              567788888776543

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-18  Score=137.66  Aligned_cols=104  Identities=37%  Similarity=0.534  Sum_probs=86.8

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCC--CCCeEEEEEEEeCC----CCCCeEEeCCccEE-EEcccCCCc
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADE--GVNGVVTYSVVSDW----ANDVFSINPQSGIF-TLTAKLDYE  359 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~--~~~~~i~y~l~~~~----~~~~f~id~~tG~l-~~~~~ld~e  359 (442)
                      ||++|.|.+..|.+.|.|++++|+.|+++.|+|+|.  +.|+.++|+|..+.    ...+|.|++.+|.+ ++.+.||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            788888888889999999999999999999999995  56789999998642    34689999999964 678899999


Q ss_pred             cCcEEEEEEEEEECCCCC---ceEEEEEEEEEee
Q psy6838         360 DVHHYIFVVQAQDTGKPM---MSSTVTVYFNVVD  390 (442)
Q Consensus       360 ~~~~~~l~V~a~D~~~~~---~~~~~~v~I~V~d  390 (442)
                      ....|.|+|+|+|.++++   +++.++|.|+|.|
T Consensus        81 ~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            999999999999965432   5788889888876

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.73  E-value=7.9e-18  Score=132.59  Aligned_cols=108  Identities=26%  Similarity=0.343  Sum_probs=83.7

Q ss_pred             CCCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcE-EEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCC
Q psy6838           4 TNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV-VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDN   82 (442)
Q Consensus         4 vNDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~-~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~   82 (442)
                      .|||+|+|....|.++|+|+ ++|+.|+++.|+|.|.+.+.. ..|.+..                              
T Consensus         1 aNDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~------------------------------   49 (113)
T d1l3wa3           1 ANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIR------------------------------   49 (113)
T ss_dssp             CCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBS------------------------------
T ss_pred             CCCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeec------------------------------
Confidence            49999999999999999999 579999999999999764322 1222222                              


Q ss_pred             CcEEEEEEeCCCCCcEEEe----CCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEec
Q psy6838          83 GRLEYSIVSGDDEEIFTIN----PSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV  151 (442)
Q Consensus        83 ~~i~y~i~~~~~~~~F~i~----~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dv  151 (442)
                               +.....|.|.    ..+|.|.+.+.||||....|.|+|+|+|.++....+++++++|.|.|.||
T Consensus        50 ---------~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          50 ---------VNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             ---------CCTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ---------cccccceEEEeecCCCceEEEeeeecccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence                     2334455552    35789999999999999999999999998532223478899999999986

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.1e-18  Score=138.23  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             cCCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEE
Q psy6838         286 TNDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYI  365 (442)
Q Consensus       286 ~n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~  365 (442)
                      +|+..|.|.+..|.+.|.|+++.|+.|++|.|+|.|.  +..+.|++..   ...|.|++. |.|++.++||||.. .|.
T Consensus         6 ~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~~---~~~F~i~~~-G~I~~~~~ld~e~~-~y~   78 (136)
T d1op4a_           6 IALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESSE---PADFKVDED-GTVYAVRSFPLTAE-QAK   78 (136)
T ss_dssp             CCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECCC---SSEEEEETT-TEEEEESCCSCSSS-CEE
T ss_pred             CCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceecccc---ceeeecccc-EEEEEecccCcccc-eEE
Confidence            4667777777888888888888888888888899995  5668998852   357999985 99999999999975 699


Q ss_pred             EEEEEEECCCCCceEEEEEEEEEeeCCCCCCccCCCC-CeeEEecCCCCCceE
Q psy6838         366 FVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLFDPMP-PNIPVYENVTLGTGL  417 (442)
Q Consensus       366 l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f~~~~-~~~~v~E~~~~g~~v  417 (442)
                      |+|+|+|+|.|. .+.++|.|+|.|.|++.|.|.... +...++|+.+.|..+
T Consensus        79 l~V~A~D~g~~~-~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~~~~~  130 (136)
T d1op4a_          79 FLIYAQDKETQE-KWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA  130 (136)
T ss_dssp             EEEEEEETTTTE-EEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCCCCSC
T ss_pred             EEEEEEecCCcc-eeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCCCCCc
Confidence            999999998865 467899999999999999997554 456678887776544

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.68  E-value=6.1e-17  Score=127.36  Aligned_cols=104  Identities=28%  Similarity=0.393  Sum_probs=85.9

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCeE-EEEEEEeCCCCCCeEEe----CCccEEEEcccCCCccC
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV-VTYSVVSDWANDVFSIN----PQSGIFTLTAKLDYEDV  361 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~-i~y~l~~~~~~~~f~id----~~tG~l~~~~~ld~e~~  361 (442)
                      ||++|.|.+..|.+.|.|+ ++|+.|+++.|.|+|.+.+.. ..|.+..+.....|.|.    ..+|.|++.+.||||..
T Consensus         2 NDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~   80 (113)
T d1l3wa3           2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELR   80 (113)
T ss_dssp             CCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSC
T ss_pred             CCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeecccccC
Confidence            7888888888888899998 569999999999999764332 23333346667889985    45789999999999999


Q ss_pred             cEEEEEEEEEEC---CCCCceEEEEEEEEEeeC
Q psy6838         362 HHYIFVVQAQDT---GKPMMSSTVTVYFNVVDL  391 (442)
Q Consensus       362 ~~~~l~V~a~D~---~~~~~~~~~~v~I~V~dv  391 (442)
                      ..|.|+|+|+|+   +.|+++++++|+|+|.||
T Consensus        81 ~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          81 KQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             CEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            999999999997   567789999999999997

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.62  E-value=5.5e-17  Score=126.23  Aligned_cols=105  Identities=19%  Similarity=0.091  Sum_probs=79.3

Q ss_pred             CCCCCccCCcceeEEEecCCCCCcEEEEEEEEeCCCCCCe-EEEEEEEeCCCCCCeEEeCCccEEEEcccCCCccCcEEE
Q psy6838         287 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNG-VVTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVHHYI  365 (442)
Q Consensus       287 n~~~p~~~~~~~~~~v~E~~~~g~~v~~v~a~D~D~~~~~-~i~y~l~~~~~~~~f~id~~tG~l~~~~~ld~e~~~~~~  365 (442)
                      ||++|.|.+.  .+.|.|+.+.+.   .|+|+|+|.+.++ .++|+|.++....++......|.+...+.||+|....|.
T Consensus         1 NDNaP~f~~~--~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~~~~y~   75 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYS   75 (107)
T ss_dssp             CCSCCCBSCC--CEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCCSSCBC
T ss_pred             CCCCCccCCC--EEEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeeccccccceeEE
Confidence            5666666643  345777777664   4789999998776 588999865444433334445555566899999999999


Q ss_pred             EEEEEEECCCCCceEEEEEEEEEeeCCCCCCcc
Q psy6838         366 FVVQAQDTGKPMMSSTVTVYFNVVDLNDNPPLF  398 (442)
Q Consensus       366 l~V~a~D~~~~~~~~~~~v~I~V~dvNd~~P~f  398 (442)
                      |.|+|+|+|+|++  +++++|+|.|+|||+|++
T Consensus        76 l~V~a~D~G~p~~--~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          76 IYVLLSDAQNNPQ--LTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             CEEECCSSSCCCE--EEECCEEECSCSSSCCCC
T ss_pred             EEEEEEeCCCCce--EEEEEEEEEEeeCCcCcc
Confidence            9999999999765  467899999999999986

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.60  E-value=2.1e-16  Score=122.80  Aligned_cols=104  Identities=25%  Similarity=0.270  Sum_probs=79.2

Q ss_pred             CCCCCccCCCeEEEEEecCCCCCcEEEEEEeeeCCCCCCcE-EEEEEEeCCCCCcEEEcCCccEEEEeeecccccccCCC
Q psy6838           5 NDNSPVFSEPVYAFDVLEDLPRGSRVGQVFTTDADEGVNGV-VTYSVVSDWANDVFSINPQSGIFTLTAKLDYEDVSDNG   83 (442)
Q Consensus         5 NDn~P~f~~~~~~~~v~E~~~~g~~v~~~~a~D~D~~~~~~-~~y~l~~~~~~~~f~id~~tg~~~~~~~ld~~~~~~~~   83 (442)
                      |||+|.|....  .+|.|+.+.+.   .|+|+|+|.+.|+. ++|+|..+..                            
T Consensus         1 NDNaP~f~~~~--~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~----------------------------   47 (107)
T d1l3wa5           1 NDNGPVPSPRV--FTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSD----------------------------   47 (107)
T ss_dssp             CCSCCCBSCCC--EEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSS----------------------------
T ss_pred             CCCCCccCCCE--EEEEecCCCce---eEEEEcCccCccceeEeeeeecccc----------------------------
Confidence            99999998754  57999998775   47899999987764 6676654322                            


Q ss_pred             cEEEEEEeCCCCCcEEE-eCCccEEEEcccCCcccCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEeccCCCCee
Q psy6838          84 RLEYSIVSGDDEEIFTI-NPSNGTLSNLKHLDRETKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDVNDNAPEF  158 (442)
Q Consensus        84 ~i~y~i~~~~~~~~F~i-~~~~g~l~~~~~lD~E~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dvNd~~P~f  158 (442)
                                  ..|.+ ....+.+...+.||+|....|.|.|+|+|+|+|+     .+.++.|+|.|+|||+|.+
T Consensus        48 ------------~~~~~~~~~~~~~~~~~~ld~e~~~~y~l~V~a~D~G~p~-----~~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          48 ------------LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP-----QLTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             ------------SSCBCCBCTTSSEEEEBCSSCCCSSCBCCEEECCSSSCCC-----EEEECCEEECSCSSSCCCC
T ss_pred             ------------cccccccccceeeeeeeccccccceeEEEEEEEEeCCCCc-----eEEEEEEEEEEeeCCcCcc
Confidence                        22222 2234445556789999999999999999999864     4567999999999999875

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.1e-15  Score=115.53  Aligned_cols=90  Identities=23%  Similarity=0.347  Sum_probs=78.9

Q ss_pred             EEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeC----CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC
Q psy6838         300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSD----WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK  375 (442)
Q Consensus       300 ~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~----~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~  375 (442)
                      +.|.||.+ |..+..+.+.|.|.+.|+.++|+|.+.    +..++|.||+.+|.|+++++||||....|.|.|+|+|.|+
T Consensus         9 v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~g~   87 (102)
T d1ncia_           9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDING   87 (102)
T ss_dssp             EEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECTTS
T ss_pred             EEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEECCC
Confidence            56788877 555667777888888899999999853    3346899999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy6838         376 PMMSSTVTVYFNVVD  390 (442)
Q Consensus       376 ~~~~~~~~v~I~V~d  390 (442)
                      |+++++++|.|+|+|
T Consensus        88 ~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          88 NQVENPIDIVINVID  102 (102)
T ss_dssp             CBSSCCEEEEEEEEC
T ss_pred             CceeeeEEEEEEEeC
Confidence            999999999999987

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.58  E-value=4.5e-15  Score=113.33  Aligned_cols=90  Identities=22%  Similarity=0.329  Sum_probs=78.8

Q ss_pred             EEEecCCCCCcEEEEEEEEeCCCCCCeEEEEEEEeCCC----CCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC
Q psy6838         300 FDVLEDLPRGSRVGQVFTTDADEGVNGVVTYSVVSDWA----NDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK  375 (442)
Q Consensus       300 ~~v~E~~~~g~~v~~v~a~D~D~~~~~~i~y~l~~~~~----~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~  375 (442)
                      +.|.||.+ |.....+.+.|.|.+.|+.++|+|.+++.    .+.|.|++.+|.|++.++||||....|.|+|+|+|.|+
T Consensus         7 i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g~   85 (100)
T d1l3wa1           7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENG   85 (100)
T ss_dssp             EEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESSS
T ss_pred             EEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECCC
Confidence            56778864 55556777788898889999999996532    35799999999999999999999999999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy6838         376 PMMSSTVTVYFNVVD  390 (442)
Q Consensus       376 ~~~~~~~~v~I~V~d  390 (442)
                      |++++++.|+|+|.|
T Consensus        86 ~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          86 SPVEEPMEITINVID  100 (100)
T ss_dssp             CBCSCCEEEEEEEEC
T ss_pred             CcEEeEEEEEEEEeC
Confidence            999999999999987

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.56  E-value=8.3e-15  Score=111.80  Aligned_cols=90  Identities=22%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             eeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeCC
Q psy6838         163 ETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDRG  237 (442)
Q Consensus       163 ~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~~  237 (442)
                      .+.|+||.+ +.....+.+.|.|.+.++.++|+|.++.     .+.|.|++.+|.|++.++||||....|.|.|.|+|.|
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~y~l~V~a~D~g   84 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN   84 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEEEESS
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCEEEEEEEEEECC
Confidence            467999975 5556788888999998999999998754     3469999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEEEEe
Q psy6838         238 EPSKSSRTKFFIRLLD  253 (442)
Q Consensus       238 ~~~~~~~~~v~I~V~d  253 (442)
                      .|++++.+.|+|+|.|
T Consensus        85 ~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          85 GSPVEEPMEITINVID  100 (100)
T ss_dssp             SCBCSCCEEEEEEEEC
T ss_pred             CCcEEeEEEEEEEEeC
Confidence            9999999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=5.8e-15  Score=113.00  Aligned_cols=91  Identities=25%  Similarity=0.409  Sum_probs=80.2

Q ss_pred             CeeEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----CCCeEecCcceEEEEcccCCcccccEEEEEEEEEeC
Q psy6838         162 NETTIPENSPLNTVVAALKAIDRDEGQNSYVEYSIINSE-----ATPFSLGPVDGLLRVAQKLDREIKSNYTLEIKAKDR  236 (442)
Q Consensus       162 ~~~~v~E~~~~g~~v~~v~a~D~D~~~~~~~~y~i~~~~-----~~~F~id~~tG~i~~~~~lD~e~~~~~~l~V~a~D~  236 (442)
                      ..+.|+||.+ |.....+.+.|.|.+.++.++|+|.+..     .+.|.|++.+|.|+++++||||....|.|.|.|+|.
T Consensus         7 ~~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~V~A~D~   85 (102)
T d1ncia_           7 PPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDI   85 (102)
T ss_dssp             CCEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEECT
T ss_pred             CCEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcceEEEEEEEEC
Confidence            3567999987 4556678888999888889999998643     457999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEEEEe
Q psy6838         237 GEPSKSSRTKFFIRLLD  253 (442)
Q Consensus       237 ~~~~~~~~~~v~I~V~d  253 (442)
                      |++.++++++|.|.|.|
T Consensus        86 g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          86 NGNQVENPIDIVINVID  102 (102)
T ss_dssp             TSCBSSCCEEEEEEEEC
T ss_pred             CCCceeeeEEEEEEEeC
Confidence            99999999999999986

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.11  Score=37.42  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=20.0

Q ss_pred             cCcEEEEEEEEEeCCCCCCCCceeEEEEEEEEEec
Q psy6838         117 TKSSYNLVVMATDMAKPPQKRLSSTTQVSIVIRDV  151 (442)
Q Consensus       117 ~~~~~~l~v~a~D~~~~~~~~~s~~~~v~I~V~dv  151 (442)
                      ....|.++|+|+|.++...........+.|.|...
T Consensus        66 ~~G~~~i~vtAtD~~~~~s~~~~~~dvf~i~V~P~  100 (103)
T d1u2ca1          66 DKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPE  100 (103)
T ss_dssp             GCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESS
T ss_pred             CceEEEEEEEEEeCCCCcccccEEEEEEEEEeCCC
Confidence            34689999999997763211122333344554433

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.73  E-value=0.13  Score=37.17  Aligned_cols=46  Identities=17%  Similarity=0.051  Sum_probs=35.0

Q ss_pred             EEEEEEeC---CCCCCeEEeCCccEEEEcccCCCccCcEEEEEEEEEECCC
Q psy6838         328 VTYSVVSD---WANDVFSINPQSGIFTLTAKLDYEDVHHYIFVVQAQDTGK  375 (442)
Q Consensus       328 i~y~l~~~---~~~~~f~id~~tG~l~~~~~ld~e~~~~~~l~V~a~D~~~  375 (442)
                      ++|++...   ....|..+|+.+|.++-...  .+..+.|.++|+|+|.++
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~--~~~~G~~~i~vtAtD~~~   81 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGLPL--DTDKGVHYISVSAARLGA   81 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEECCC--GGGCEEEEEEEEEEEECT
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEccC--CCCceEEEEEEEEEeCCC
Confidence            67777532   34689999999999986433  455789999999999665