Psyllid ID: psy6883

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MEDSGRLYLGFHHSPHLLPQPHHTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQGMKSDDGDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLSNQSLPCKPVPLTSSSSRNTHIQKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISVNRSPDSASYST
ccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHccccccccEEccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccc
cccccEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHccHHHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHcccccccccHHccccccccccccccccccccccc
medsgrlylgfhhsphllpqphhtgprtsfdspldlrgaphpgdmylrgaphpgdmcnlsspspsseddsdadinvesddgdeqgmksddgdeqgMSNVRRNIAEFHKHFsncesdvngcptdgsispgpegdsdkqdgknsivkppySYIALITMAILqsphkkltlSGICEFImsrfpyyrekfpawqnsirhnlslndcfvkiprepgnpgkgnywtldpmaedmfdngsflrrrkrykrtppdfllrdpHAAAMASflgsdpyhhgllphslqhggfsfmsplppavpllppseLARIQLGLNllsnqslpckpvpltssssrnthiqkdkcsavFSIDSLIGKNEFEKSaekldsdsehsiskdkcsavfsidsligknefeksaekldsdsehsisvnrspdsasyst
MEDSGRLYLGFHHSPHLLPQPHHTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCNLSSPSPSSEDDSDADINVEsddgdeqgmksddgdeqgMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISPGpegdsdkqdgknSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLSNQSLPCKPVPLtssssrnthiqkdkCSAVFSIDSLIGKNEFEKSAEKldsdsehsiskdkcsavFSIDSLIGKNEFEKSAekldsdsehsisvnrspdsasyst
MEDSGRLYLGFhhsphllpqphhTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCNLsspspsseddsdadINVESDDGDEQGMKSDDGDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSplppavpllppSELARIqlglnllsnqslPCKPVPLTSSSSRNTHIQKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISVNRSPDSASYST
***********************************************************************************************************************************************VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPRE****GKGNYWTLDPMAEDMFDNGSFLRR*********DFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLS*************************CSAVFSIDSLI***************************VFSI*************************************
****GRL*LGFHH****************************************************************************************************************************************YIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFL***********************************************************************************************************************************************************************************
MEDSGRLYLGFHHSPHLLPQPHHTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCN**************DINVES**************EQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSI************GKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLSNQSLPCKPVPLTSSSSRNTHIQKDKCSAVFSIDSLIGKNEFE****************DKCSAVFSIDSLIGKNEFE***************************
***SGRLYLGFHHSPHLL**PHHTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQGMKSDDGDEQGMSNV*****************************************NSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRT**************************************************************************************************************************************************************************
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MEDSGRLYLGFHHSPHLLPQPHHTGPRTSFDSPLDLRGAPHPGDMYLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQGMKSDDGDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLGSDPYHHGLLPHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLSNQSLPCKPVPLTSSSSRNTHIQKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISKDKCSAVFSIDSLIGKNEFEKSAEKLDSDSEHSISVNRSPDSASYST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
Q9DEN4371 Forkhead box protein D3-A N/A N/A 0.584 0.652 0.532 1e-58
Q9DEN3371 Forkhead box protein D3-B N/A N/A 0.541 0.603 0.556 3e-58
Q5M7L9369 Forkhead box protein D3 O yes N/A 0.521 0.585 0.551 8e-58
Q02361 456 Fork head domain-containi yes N/A 0.248 0.225 0.912 1e-55
P79772394 Forkhead box protein D3 O yes N/A 0.487 0.512 0.588 2e-53
Q61060465 Forkhead box protein D3 O yes N/A 0.444 0.395 0.508 4e-50
Q90WN4346 Forkhead box protein D2 O N/A N/A 0.618 0.739 0.484 6e-50
Q9UJU5478 Forkhead box protein D3 O yes N/A 0.227 0.196 0.936 2e-49
Q12950439 Forkhead box protein D4 O no N/A 0.299 0.282 0.728 2e-49
Q61345456 Forkhead box protein D1 O no N/A 0.287 0.260 0.837 2e-48
>sp|Q9DEN4|FXD3A_XENLA Forkhead box protein D3-A OS=Xenopus laevis GN=foxd3-a PE=1 SV=1 Back     alignment and function desciption
 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/276 (53%), Positives = 175/276 (63%), Gaps = 34/276 (12%)

Query: 45  MYLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDDG-------DEQGMKSDDGDEQGMS 97
           M L G+   G   ++S  +  S DD+D D+  E D+        +     +D+  E G  
Sbjct: 1   MTLSGS---GSASDMSGQTVLSADDADIDVVGEGDEALDKDSECESTAGHTDEVGELGGK 57

Query: 98  NVRRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMA 157
            + R+ +      S  E++  G     S     EG  +K   KNS+VKPPYSYIALITM+
Sbjct: 58  EIPRSPSG-----SGTEAEGKG----ESQQQQQEGIQNKP--KNSLVKPPYSYIALITMS 106

Query: 158 ILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGN 217
           ILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGN
Sbjct: 107 ILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGN 166

Query: 218 YWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLG---SDPY--HHGLL 272
           YWTLDP +EDMFDNGSFLRRRKR+KR   D  LR+  A  M SF     + PY  H+GL 
Sbjct: 167 YWTLDPQSEDMFDNGSFLRRRKRFKRQQQDS-LREQTALMMQSFGAYSLASPYGRHYGLH 225

Query: 273 PHSLQHGG---FSFMSP----LPPAVPLLPPSELAR 301
           P +  H     + ++ P    LPPAVPLLP SEL R
Sbjct: 226 PAAYTHPAALQYPYIPPVGHMLPPAVPLLPSSELTR 261
Transcriptional repressor that is an essential upstream regulator of neural crest determination and mesoderm induction. Functions by recruiting the transcriptional corepressor tle4. Also acts in a negative auto-regulator loop by inhibiting the transcription of its own gene.
Xenopus laevis (taxid: 8355)
>sp|Q9DEN3|FXD3B_XENLA Forkhead box protein D3-B OS=Xenopus laevis GN=foxd3-b PE=2 SV=1 Back     alignment and function description
>sp|Q5M7L9|FOXD3_XENTR Forkhead box protein D3 OS=Xenopus tropicalis GN=foxd3 PE=2 SV=1 Back     alignment and function description
>sp|Q02361|FD3_DROME Fork head domain-containing protein FD3 OS=Drosophila melanogaster GN=fd59A PE=2 SV=2 Back     alignment and function description
>sp|P79772|FOXD3_CHICK Forkhead box protein D3 OS=Gallus gallus GN=FOXD3 PE=2 SV=1 Back     alignment and function description
>sp|Q61060|FOXD3_MOUSE Forkhead box protein D3 OS=Mus musculus GN=Foxd3 PE=2 SV=3 Back     alignment and function description
>sp|Q90WN4|FOXD2_XENLA Forkhead box protein D2 OS=Xenopus laevis GN=foxd2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UJU5|FOXD3_HUMAN Forkhead box protein D3 OS=Homo sapiens GN=FOXD3 PE=1 SV=1 Back     alignment and function description
>sp|Q12950|FOXD4_HUMAN Forkhead box protein D4 OS=Homo sapiens GN=FOXD4 PE=2 SV=4 Back     alignment and function description
>sp|Q61345|FOXD1_MOUSE Forkhead box protein D1 OS=Mus musculus GN=Foxd1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
242021691410 Forkhead box protein D3, putative [Pedic 0.753 0.760 0.516 3e-86
270010909271 hypothetical protein TcasGA2_TC015957 [T 0.531 0.811 0.598 3e-70
63102195371 Forkhead box D3 [Danio rerio] 0.700 0.781 0.506 2e-61
18858703371 forkhead box protein D3 [Danio rerio] gi 0.673 0.752 0.518 5e-61
284005018388 fork-head box D transcription factor [Sa 0.311 0.332 0.794 1e-57
238054009398 forkhead box D3 [Oryzias latipes] gi|226 0.473 0.492 0.612 2e-57
328709854 561 PREDICTED: hypothetical protein LOC10016 0.289 0.213 0.860 3e-57
47222158347 unnamed protein product [Tetraodon nigro 0.439 0.524 0.624 9e-57
148230981371 forkhead box protein D3-A [Xenopus laevi 0.584 0.652 0.532 9e-57
147903421371 forkhead box protein D3-B [Xenopus laevi 0.541 0.603 0.556 2e-56
>gi|242021691|ref|XP_002431277.1| Forkhead box protein D3, putative [Pediculus humanus corporis] gi|212516534|gb|EEB18539.1| Forkhead box protein D3, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 199/385 (51%), Positives = 240/385 (62%), Gaps = 73/385 (18%)

Query: 1   MEDSGRLYLGF------HHSPHLLPQPHHTGP------RTSFDSPLDLRGAPHPGDMYLR 48
           M+++GRL +G+        +  +L  P  T P        S +SPLDLRG  + G  +L 
Sbjct: 1   MDETGRLVIGYRDLQQSQTTTPILINPILTVPIRNSEISNSSESPLDLRG--NVGGEHLS 58

Query: 49  GAPHPGDMCNLSSPSPSSEDDSDADINVESDDGDEQGMKSDDGDEQGMSNVRRNIAEFHK 108
               P  +C L+       D  ++D+NV+SDD     +             R  IAEFH+
Sbjct: 59  PM-SPVSVCRLT-------DSEESDVNVDSDDECSPSLM----------QARHTIAEFHR 100

Query: 109 HFSN-CESDVNGCPTDGSISPGPEGDSDKQDG----------------KNSIVKPPYSYI 151
           HF+N   +++N         P PE   D+ DG                  ++VKPPYSYI
Sbjct: 101 HFANSLATEMNPN------QPSPES-PDQNDGGLDETSPSSPTDSSKKSLALVKPPYSYI 153

Query: 152 ALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPG 211
           ALITMAILQSP KKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF+KIPREPG
Sbjct: 154 ALITMAILQSPRKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFIKIPREPG 213

Query: 212 NPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHAAAMASFLG-SDPYHHG 270
           NPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKR PPDF+LR+ HAAAM+ FLG SDPYHH 
Sbjct: 214 NPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRQPPDFVLREHHAAAMSQFLGSSDPYHHA 273

Query: 271 LL--PHSLQHGGFSFMSPLPPAVPLLPPSELARIQLGLNLLSNQSLPCKPVPLTSSSSRN 328
            L   H   H  + ++SPLPPA+PLL P+ELAR+ LG  L+S       P P  +SS++N
Sbjct: 274 SLLGSHPALHNPYQYLSPLPPAIPLLSPAELARLSLG-PLVS-------PTP-KNSSNKN 324

Query: 329 THIQKDKCSAV-----FSIDSLIGK 348
             I    C+       F+IDSLIGK
Sbjct: 325 NSITSSGCTKSNHKNGFTIDSLIGK 349

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270010909|gb|EFA07357.1| hypothetical protein TcasGA2_TC015957 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|63102195|gb|AAH95603.1| Forkhead box D3 [Danio rerio] Back     alignment and taxonomy information
>gi|18858703|ref|NP_571365.1| forkhead box protein D3 [Danio rerio] gi|2982349|gb|AAC06366.1| fork head domain protein FKD6 [Danio rerio] Back     alignment and taxonomy information
>gi|284005018|ref|NP_001164677.1| fork-head box D transcription factor [Saccoglossus kowalevskii] gi|283464169|gb|ADB22668.1| fork-head box D transcription factor [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|238054009|ref|NP_001153925.1| forkhead box D3 [Oryzias latipes] gi|226441715|gb|ACO57460.1| forkhead box D3 [Oryzias latipes] Back     alignment and taxonomy information
>gi|328709854|ref|XP_003244090.1| PREDICTED: hypothetical protein LOC100167072 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|47222158|emb|CAG11584.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|148230981|ref|NP_001079026.1| forkhead box protein D3-A [Xenopus laevis] gi|82247048|sp|Q9DEN4.1|FXD3A_XENLA RecName: Full=Forkhead box protein D3-A; Short=FoxD3-A; Short=FoxD3a; AltName: Full=Fork head domain-related protein 6; Short=FKH-6; Short=Forkhead protein 6; Short=xFD-6; Short=xFKH6 gi|4107097|dbj|BAA36334.1| XFD-6 [Xenopus laevis] gi|10801038|emb|CAC12963.1| winged helix transcription factor [Xenopus laevis] gi|114107898|gb|AAI23273.1| Foxd3-A protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|147903421|ref|NP_001079078.1| forkhead box protein D3-B [Xenopus laevis] gi|82247047|sp|Q9DEN3.1|FXD3B_XENLA RecName: Full=Forkhead box protein D3-B; Short=FoxD3-B; Short=FoxD3b; AltName: Full=Fork head domain-related protein 6'; Short=xFD-6' gi|10799935|emb|CAC12895.1| winged helix transcription factor [Xenopus laevis] gi|49257271|gb|AAH72772.1| Foxd3b-A protein [Xenopus laevis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
ZFIN|ZDB-GENE-980526-143371 foxd3 "forkhead box D3" [Danio 0.471 0.525 0.625 1.1e-62
FB|FBgn0004896 456 fd59A "forkhead domain 59A" [D 0.379 0.344 0.683 4.8e-58
ZFIN|ZDB-GENE-040426-2094343 foxd1 "forkhead box D1" [Danio 0.444 0.536 0.612 5.4e-57
UNIPROTKB|Q90WN4346 foxd2 "Forkhead box protein D2 0.483 0.578 0.568 7.5e-57
UNIPROTKB|Q5WM45352 foxd5 "Forkhead box protein D5 0.323 0.380 0.740 4.8e-56
UNIPROTKB|Q5M7L9369 foxd3 "Forkhead box protein D3 0.355 0.398 0.727 6.8e-56
UNIPROTKB|Q9DEN3371 foxd3-b "Forkhead box protein 0.381 0.425 0.684 8.6e-56
UNIPROTKB|Q9DEN4371 foxd3-a "Forkhead box protein 0.350 0.390 0.738 4.8e-55
UNIPROTKB|Q9PT68353 foxd5-b "Forkhead box protein 0.323 0.379 0.740 8.8e-55
UNIPROTKB|Q4H3J2 611 Ci-FoxD-a/b "Transcription fac 0.326 0.220 0.741 1.4e-54
ZFIN|ZDB-GENE-980526-143 foxd3 "forkhead box D3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 615 (221.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 130/208 (62%), Positives = 149/208 (71%)

Query:    80 DGDEQGMKSD-DGDEQGMSNVRRNIAEFH---KHFSNCESDVNGCPTDGSISPGPEGDSD 135
             +GDE GM+ D D + Q M +    + E     +  S CES+ +G  T G       G   
Sbjct:    30 EGDE-GMEQDSDCESQCMQDRGDEVEEIEVKERSDSPCESNADG-ETKGDAQESSTGPMQ 87

Query:   136 KQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRH 195
              +  K+S+VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRH
Sbjct:    88 NKP-KSSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRH 146

Query:   196 NLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFLLRDPHA 255
             NLSLNDCFVKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR+KR  PD +LRD  A
Sbjct:   147 NLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQPD-ILRDQTA 205

Query:   256 AAMASF--LG-SDPY--HHGLLPHSLQH 278
               M SF   G  +PY  H+G+ P +  H
Sbjct:   206 LMMQSFGAYGIGNPYGRHYGIHPAAYTH 233
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0009790 "embryo development" evidence=IBA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0007389 "pattern specification process" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0001822 "kidney development" evidence=IBA
GO:0048846 "axon extension involved in axon guidance" evidence=IBA
GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0030318 "melanocyte differentiation" evidence=IGI
GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IMP
GO:0014032 "neural crest cell development" evidence=IGI;IMP
GO:0006351 "transcription, DNA-dependent" evidence=IEA;IDA
GO:0001071 "nucleic acid binding transcription factor activity" evidence=IDA
GO:0051216 "cartilage development" evidence=IMP
GO:0048937 "lateral line nerve glial cell development" evidence=IMP
GO:0048484 "enteric nervous system development" evidence=IMP
GO:0050935 "iridophore differentiation" evidence=IMP
GO:0007422 "peripheral nervous system development" evidence=IMP
GO:0050931 "pigment cell differentiation" evidence=IGI;IMP
GO:0048485 "sympathetic nervous system development" evidence=IMP
GO:0001755 "neural crest cell migration" evidence=IMP
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
FB|FBgn0004896 fd59A "forkhead domain 59A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2094 foxd1 "forkhead box D1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q90WN4 foxd2 "Forkhead box protein D2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5WM45 foxd5 "Forkhead box protein D5" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M7L9 foxd3 "Forkhead box protein D3" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DEN3 foxd3-b "Forkhead box protein D3-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DEN4 foxd3-a "Forkhead box protein D3-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q9PT68 foxd5-b "Forkhead box protein D5-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q4H3J2 Ci-FoxD-a/b "Transcription factor protein" [Ciona intestinalis (taxid:7719)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q63245FOXD3_RATNo assigned EC number0.93400.21980.9009noN/A
Q61060FOXD3_MOUSENo assigned EC number0.50890.44440.3956yesN/A
Q63251FOXD1_RATNo assigned EC number0.90100.21980.9009noN/A
P79772FOXD3_CHICKNo assigned EC number0.58820.48790.5126yesN/A
Q5M7L9FOXD3_XENTRNo assigned EC number0.55170.52170.5853yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
pfam0025096 pfam00250, Fork_head, Fork head domain 4e-61
smart0033989 smart00339, FH, FORKHEAD 2e-52
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 7e-52
COG5025610 COG5025, COG5025, Transcription factor of the Fork 4e-23
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 8e-15
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  192 bits (490), Expect = 4e-61
 Identities = 68/96 (70%), Positives = 79/96 (82%)

Query: 145 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 204
           KPPYSYIALITMAI QSP K LTLS I ++IM  FPYYR+    WQNSIRHNLSLN CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 205 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 240
           K+PR P  PGKG+YWTLDP +E+MF+NG +L+RRKR
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG3563|consensus454 100.0
KOG3562|consensus277 100.0
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG2294|consensus454 100.0
KOG4385|consensus581 99.84
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.82
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.51
PF0053877 Linker_histone: linker histone H1 and H5 family; I 91.59
smart0052666 H15 Domain in histone families 1 and 5. 90.77
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 87.67
>KOG3563|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.1e-40  Score=325.57  Aligned_cols=110  Identities=57%  Similarity=1.045  Sum_probs=105.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCcee
Q psy6883         139 GKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNY  218 (414)
Q Consensus       139 ~~~~~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsy  218 (414)
                      ..-...||||||+.||+|||+.+|.|+|||+|||+||++.|||||.+...|||||||.||+|+||+||+|.++.||||+|
T Consensus       167 RsY~haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSf  246 (454)
T KOG3563|consen  167 RSYTHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSF  246 (454)
T ss_pred             ccccCCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcchhcccCCceeecccccCCCCCCc
Q psy6883         219 WTLDPMAEDMFDNGSFLRRRKRYKRTPPDF  248 (414)
Q Consensus       219 WtLdP~ae~~f~~Gs~lRRRKR~kr~~p~~  248 (414)
                      |+|+|.+.+||+||.++||+||||..+++.
T Consensus       247 WTLHpdsGNMFENGCYLRRQKRFK~ekk~~  276 (454)
T KOG3563|consen  247 WTLHPDSGNMFENGCYLRRQKRFKCEKKEA  276 (454)
T ss_pred             eeecCCcCcccccchhehhhhhhhhhhhhc
Confidence            999999999999999999999999877655

>KOG3562|consensus Back     alignment and domain information
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 4e-51
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 2e-47
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 1e-35
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 1e-33
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 9e-28
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 1e-25
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 3e-24
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 5e-23
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 5e-15
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 7e-15
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 4e-14
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 4e-14
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 1e-12
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 2e-12
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 2e-12
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 2e-12
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 9e-12
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 1e-11
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure 
Iteration: 1

 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/96 (94%), Positives = 93/96 (96%)
Query: 145 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 204
           KPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 205 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 240
           KIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 1e-73
2c6y_A111 Forkhead box protein K2; transcription regulation, 4e-73
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 2e-72
2hdc_A97 Protein (transcription factor); structure, dyanami 2e-72
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 8e-68
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 3e-58
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 1e-57
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 3e-52
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 5e-52
3bpy_A85 FORK head domain, forkhead transcription factor FO 6e-50
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 3e-49
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
 Score =  224 bits (572), Expect = 1e-73
 Identities = 94/103 (91%), Positives = 98/103 (95%)

Query: 143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 202
           +VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDC
Sbjct: 1   MVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDC 60

Query: 203 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTP 245
           FVKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR+KR  
Sbjct: 61  FVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQ 103
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1uhm_A78 Histone H1, histone HHO1P; winged helix-turn-helix 81.7
1uss_A88 Histone H1; DNA binding protein, linker histone, D 81.41
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=3.2e-44  Score=302.75  Aligned_cols=101  Identities=63%  Similarity=1.154  Sum_probs=98.0

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEec
Q psy6883         143 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLD  222 (414)
Q Consensus       143 ~~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLd  222 (414)
                      .+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus         1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~   80 (102)
T 1vtn_C            1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH   80 (102)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred             CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence            37999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             CcchhcccCCceeecccccCC
Q psy6883         223 PMAEDMFDNGSFLRRRKRYKR  243 (414)
Q Consensus       223 P~ae~~f~~Gs~lRRRKR~kr  243 (414)
                      |+++++|++|.++|||+|+++
T Consensus        81 p~~~~~f~~g~~~rr~~~~~~  101 (102)
T 1vtn_C           81 PSSGNMFENGCYLRRQKRFKL  101 (102)
T ss_dssp             GGGCSTTCSSCSSSCSSCCCC
T ss_pred             cCHHHHhhcCCeecccccccc
Confidence            999999999999999998875
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 Back     alignment and structure
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 2e-53
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 2e-50
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 4e-50
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 6e-38
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 4e-37
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 7e-36
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  170 bits (433), Expect = 2e-53
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 203
           VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCF
Sbjct: 1   VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60

Query: 204 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 240
           VKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 61  VKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 91.04
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 89.62
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 89.38
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.3e-42  Score=284.41  Aligned_cols=97  Identities=95%  Similarity=1.596  Sum_probs=94.2

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCCccCCCccccccccccccccccccccCCCCCCCCceeEEecC
Q psy6883         144 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP  223 (414)
Q Consensus       144 ~KPPySYaaLIa~AI~sSP~kkLTLsEIYewI~~~FPYYr~~~~GWQNSIRHNLSLNkcFvKVpR~~~~pGKGsyWtLdP  223 (414)
                      +||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+||+|+|
T Consensus         1 vKPp~sY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p   80 (97)
T d2hdca_           1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CCCCCcHHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhcccCCceeecccc
Q psy6883         224 MAEDMFDNGSFLRRRKR  240 (414)
Q Consensus       224 ~ae~~f~~Gs~lRRRKR  240 (414)
                      ++++.|++|.++|||||
T Consensus        81 ~~~~~~~~~~~~rrrkr   97 (97)
T d2hdca_          81 QSEDMFDNGSFLRRRKR   97 (97)
T ss_dssp             THHHHHHHSCCCSSSCC
T ss_pred             cHHHHhhcCCccccCCC
Confidence            99999999999888875
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure