Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 70
pfam00044 148
pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh
2e-16 smart00846 149
smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de
5e-16 PLN02272 421
PLN02272, PLN02272, glyceraldehyde-3-phosphate deh
3e-15 COG0057 335
COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog
1e-12 PTZ00023 337
PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh
1e-12 TIGR01534 326
TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh
2e-12 pfam00044 148
pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh
2e-09 smart00846 149
smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de
2e-09 PRK15425 331
PRK15425, gapA, glyceraldehyde-3-phosphate dehydro
2e-09 TIGR01532 325
TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de
1e-08 PRK07729 343
PRK07729, PRK07729, glyceraldehyde-3-phosphate deh
2e-08 PLN02358 338
PLN02358, PLN02358, glyceraldehyde-3-phosphate deh
2e-07 TIGR01534 326
TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh
5e-07 COG0057 335
COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog
7e-06 PRK13535 336
PRK13535, PRK13535, erythrose 4-phosphate dehydrog
8e-06 PLN02272 421
PLN02272, PLN02272, glyceraldehyde-3-phosphate deh
1e-05 PRK08955 334
PRK08955, PRK08955, glyceraldehyde-3-phosphate deh
1e-05 TIGR01532 325
TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de
3e-05 PRK13535 336
PRK13535, PRK13535, erythrose 4-phosphate dehydrog
2e-04 PLN03096 395
PLN03096, PLN03096, glyceraldehyde-3-phosphate deh
2e-04 PRK07403 337
PRK07403, PRK07403, glyceraldehyde-3-phosphate deh
3e-04 PRK15425 331
PRK15425, gapA, glyceraldehyde-3-phosphate dehydro
6e-04 PRK07729 343
PRK07729, PRK07729, glyceraldehyde-3-phosphate deh
6e-04 PTZ00023 337
PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh
0.001 PTZ00434 361
PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho
0.003 PRK08289 477
PRK08289, PRK08289, glyceraldehyde-3-phosphate deh
0.004
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Hide alignment and domain information
Score = 67.9 bits (167), Expect = 2e-16
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIND + + YL KYDS HG+F+GEV+ D + L+VNG K
Sbjct: 27 VVAINDLT-DPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKK 69
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Show alignment and domain information
Score = 66.8 bits (164), Expect = 5e-16
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVAIND +Y+ YL KYDS HG+F G V+ +G+ LVVNG
Sbjct: 27 VVAINDL-TDPEYLAYLLKYDSVHGRFPGTVEVEGDGLVVNGKA 69
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Score = 67.6 bits (165), Expect = 3e-15
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69
VVA+NDPFI YM Y+FKYDSTHG F G + D + L +NG +
Sbjct: 112 VVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQ 156
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Score = 60.3 bits (147), Expect = 1e-12
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 18 VKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
++ DG+ VVAIND DY+ +L KYDS HG+F+GEV+ + LVVNG
Sbjct: 21 LERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKG 71
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 59.8 bits (145), Expect = 1e-12
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ VVAINDPF+ +DYM YL KYDS HG EV FL++ K
Sbjct: 25 EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKK 72
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I
Back Show alignment and domain information
Score = 59.6 bits (145), Expect = 2e-12
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNKT 70
VVAIND ++Y+ YL KYDS HG+F GEV AD + LVVNG +
Sbjct: 28 VVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADEDGLVVNGKEV 71
This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Show alignment and domain information
Score = 49.8 bits (120), Expect = 2e-09
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
+ YL KYDS HG+F+GEV+ D + L+V A DP +GVD +V +
Sbjct: 39 LAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIKVFAERDPAELPWGELGVDIVV-----E 93
Query: 47 STHGKFNGEVKA 58
ST G F KA
Sbjct: 94 ST-GVFTTAEKA 104
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Show alignment and domain information
Score = 49.9 bits (120), Expect = 2e-09
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP------FIGVDYMVYLFKYD 46
+ YL KYDS HG+F G V+ +G+ LVV A DP +GVD +V +
Sbjct: 39 LAYLLKYDSVHGRFPGTVEVEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVV-----E 93
Query: 47 STHGKFNGEVKA 58
T G F KA
Sbjct: 94 CT-GGFTTREKA 104
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Score = 50.9 bits (121), Expect = 2e-09
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 29 IVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 71
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase
Back Show alignment and domain information
Score = 48.7 bits (116), Expect = 1e-08
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 24 FLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68
VVAIN+ M +L KYD++HG+F EV+ D + L V +
Sbjct: 27 ITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQDRDQLFVGDD 70
This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Score = 48.2 bits (115), Expect = 2e-08
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ F +VAIN + + + +L KYD+ HGKF+G V+A + L+V+G K
Sbjct: 24 ESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKK 71
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Score = 45.1 bits (106), Expect = 2e-07
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKF 52
+VA+NDPFI +YM Y+FKYDS HG++
Sbjct: 32 LVAVNDPFITTEYMTYMFKYDSVHGQW 58
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I
Back Show alignment and domain information
Score = 44.2 bits (105), Expect = 5e-07
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 21/75 (28%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV---------AINDP------FIGVDYMVYLFKY 45
+ YL KYDS HG+F GEV AD + LVV + DP +GVD ++
Sbjct: 40 LAYLLKYDSVHGRFEGEVTADEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVI----- 94
Query: 46 DSTHGKFNGEVKADG 60
+ T GKF + K +G
Sbjct: 95 ECT-GKFRDKEKLEG 108
This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Score = 41.0 bits (97), Expect = 7e-06
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDP------FIGVDYMVYLFKYD 46
+ +L KYDS HG+F+GEV+ + LVV A DP +GVD +V +
Sbjct: 41 LAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPANLPWADLGVDIVV-----E 95
Query: 47 STHGKFNGEVKA 58
T GKF G KA
Sbjct: 96 CT-GKFTGREKA 106
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 40.8 bits (96), Expect = 8e-06
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 26 VVAIN---DPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVV 65
VVAIN D + M +L KYD++HG+F +V+ + + L V
Sbjct: 31 VVAINELADA----EGMAHLLKYDTSHGRFAWDVRQERDQLFV 69
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Score = 40.2 bits (94), Expect = 1e-05
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKA 20
M Y+FKYDSTHG F G +
Sbjct: 125 MAYMFKYDSTHGNFKGTINV 144
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Score = 40.5 bits (95), Expect = 1e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 27 VAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
V INDP + +L ++DS HG+++ EV A+G+ +V+NG +
Sbjct: 30 VQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKR 72
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase
Back Show alignment and domain information
Score = 39.5 bits (92), Expect = 3e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M +L KYD++HG+F EV+ D + L V
Sbjct: 41 MAHLLKYDTSHGRFAWEVRQDRDQLFV 67
This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M +L KYD++HG+F +V+ + + L V
Sbjct: 43 MAHLLKYDTSHGRFAWDVRQERDQLFV 69
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Score = 36.8 bits (85), Expect = 2e-04
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN 61
+ D VVAIND GV +L KYDST G F+ +VK G+
Sbjct: 82 RKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFDADVKPVGD 123
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Score = 36.8 bits (85), Expect = 3e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 19 KADGNFLVVAIN---DPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNG 67
+ + +VAIN DP +L KYDS GK N ++ AD N + VNG
Sbjct: 23 RENSQLELVAINDTSDPRTNA----HLLKYDSMLGKLNADISADENSITVNG 70
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Score = 35.5 bits (81), Expect = 6e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M Y+ KYDSTHG+F+G V+ L+V
Sbjct: 41 MAYMLKYDSTHGRFDGTVEVKDGHLIV 67
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Score = 35.9 bits (83), Expect = 6e-04
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYD+ HGKF+G V+A + L+V
Sbjct: 41 LAHLIKYDTVHGKFDGTVEAFEDHLLV 67
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 35.2 bits (81), Expect = 0.001
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M YL KYDS HG EV FL++
Sbjct: 42 MCYLLKYDSVHGSLPAEVSVTDGFLMI 68
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Score = 33.5 bits (76), Expect = 0.003
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVK--------ADGNFLVVNGNK 69
VVA+ D +Y Y KYD+ HG+ V+ + LVVNG++
Sbjct: 34 VVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHR 85
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Score = 33.4 bits (77), Expect = 0.004
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 42 LFKYDSTHGKFNGEVKAD--GNFLVVNGN 68
L + DS HG FNG + D N ++ NGN
Sbjct: 177 LLRRDSVHGPFNGTITVDEENNAIIANGN 205
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
70
PTZ00023 337
glyceraldehyde-3-phosphate dehydrogenase; Provisio
99.49 PTZ00434 361
cytosolic glyceraldehyde 3-phosphate dehydrogenase
99.48 PRK07403 337
glyceraldehyde-3-phosphate dehydrogenase; Reviewed
99.38 PF00044 151
Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,
99.38 PRK15425 331
gapA glyceraldehyde-3-phosphate dehydrogenase A; P
99.38 PRK07729 343
glyceraldehyde-3-phosphate dehydrogenase; Validate
99.37 PTZ00353 342
glycosomal glyceraldehyde-3-phosphate dehydrogenas
99.36 TIGR01534 327
GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,
99.32 PLN02272 421
glyceraldehyde-3-phosphate dehydrogenase
99.32 PLN02237 442
glyceraldehyde-3-phosphate dehydrogenase B
99.31 PRK08955 334
glyceraldehyde-3-phosphate dehydrogenase; Validate
99.28 PRK13535 336
erythrose 4-phosphate dehydrogenase; Provisional
99.27 PLN02358 338
glyceraldehyde-3-phosphate dehydrogenase
99.26 smart00846 149
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,
99.25 PTZ00434 361
cytosolic glyceraldehyde 3-phosphate dehydrogenase
99.24 PF00044 151
Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,
99.15 PTZ00023 337
glyceraldehyde-3-phosphate dehydrogenase; Provisio
99.14 smart00846 149
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,
99.14 PRK08289 477
glyceraldehyde-3-phosphate dehydrogenase; Reviewed
99.1 TIGR01532 325
E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas
99.09 COG0057 335
GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt
99.07 PRK08289 477
glyceraldehyde-3-phosphate dehydrogenase; Reviewed
99.07 PLN03096 395
glyceraldehyde-3-phosphate dehydrogenase A; Provis
99.05 PRK07729 343
glyceraldehyde-3-phosphate dehydrogenase; Validate
99.05 PRK07403 337
glyceraldehyde-3-phosphate dehydrogenase; Reviewed
99.05 PRK15425 331
gapA glyceraldehyde-3-phosphate dehydrogenase A; P
99.05 PRK08955 334
glyceraldehyde-3-phosphate dehydrogenase; Validate
98.98 KOG0657|consensus 285
98.98 PLN02358 338
glyceraldehyde-3-phosphate dehydrogenase
98.96 PLN02237 442
glyceraldehyde-3-phosphate dehydrogenase B
98.94 PTZ00353 342
glycosomal glyceraldehyde-3-phosphate dehydrogenas
98.92 PLN02272 421
glyceraldehyde-3-phosphate dehydrogenase
98.91 PRK13535 336
erythrose 4-phosphate dehydrogenase; Provisional
98.88 COG0057 335
GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt
98.88 TIGR01534 327
GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,
98.83 TIGR01532 325
E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas
98.76 PLN03096 395
glyceraldehyde-3-phosphate dehydrogenase A; Provis
98.73 KOG0657|consensus 285
98.55 TIGR01546 333
GAPDH-II_archae glyceraldehyde-3-phosphate dehydro
96.39
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Hide alignment and domain information
Probab=99.49 E-value=2.6e-14 Score=99.49 Aligned_cols=48 Identities=50% Similarity=0.897 Sum_probs=45.0
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++|||.+++++++|||||||+||+|++.++++++.|+|||++
T Consensus 25 ~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~ 72 (337)
T PTZ00023 25 EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKK 72 (337)
T ss_pred CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeE
Confidence 469999999976799999999999999999999999999999999985
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=6.2e-14 Score=98.30 Aligned_cols=48 Identities=35% Similarity=0.587 Sum_probs=44.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe--------eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA--------DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~--------~~~~l~v~~~~ 69 (70)
+++++++||||.+++++++|||||||+||+|+++++. +++.|+|||++
T Consensus 30 ~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~ 85 (361)
T PTZ00434 30 TEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHR 85 (361)
T ss_pred CCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEECCEE
Confidence 4699999999767999999999999999999999998 88999999986
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.38 E-value=1.8e-13 Score=95.30 Aligned_cols=47 Identities=40% Similarity=0.552 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++|||+. ++++++|||||||+||+|+++++.+++.|++||++
T Consensus 26 ~~~~vvaind~~-~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 26 SQLELVAINDTS-DPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred CCeEEEEecCCC-CHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 469999999985 99999999999999999999999999999999985
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate
Back Show alignment and domain information
Probab=99.38 E-value=1.4e-13 Score=86.71 Aligned_cols=49 Identities=51% Similarity=0.881 Sum_probs=45.5
Q ss_pred cceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 21 ~~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.++++++++||+..++++++|||+|||+||+|+..++++++.|.|||++
T Consensus 22 ~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~ 70 (151)
T PF00044_consen 22 QPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKK 70 (151)
T ss_dssp STTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEE
T ss_pred cceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeeccc
Confidence 3479999999996699999999999999999999999999999999974
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Probab=99.38 E-value=2e-13 Score=94.86 Aligned_cols=47 Identities=51% Similarity=0.952 Sum_probs=44.1
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+ +++++++|||||||+||+|+++++++++.|++||++
T Consensus 25 ~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~ 71 (331)
T PRK15425 25 SDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 71 (331)
T ss_pred CCCEEEEEecC-CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeE
Confidence 46999999998 599999999999999999999999999999999975
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.37 E-value=2.3e-13 Score=94.94 Aligned_cols=47 Identities=43% Similarity=0.742 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++|||+. ++++++|||||||+||+|+++++++++.|+|||++
T Consensus 25 ~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~ 71 (343)
T PRK07729 25 SAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKK 71 (343)
T ss_pred CCcEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence 469999999984 99999999999999999999999999999999985
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.36 E-value=2.2e-13 Score=95.02 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=43.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCcccc-ceEEeeCCeEEECC-EE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFN-GEVKADGNFLVVNG-NK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~-~~~~~~~~~l~v~~-~~ 69 (70)
++++++++|||.+++++++|||+|||+||+|+ .+++++++.|+||| ++
T Consensus 25 ~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~ 74 (342)
T PTZ00353 25 PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQK 74 (342)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeE
Confidence 46999999997569999999999999999996 68999999999998 54
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I
Back Show alignment and domain information
Probab=99.32 E-value=7.8e-13 Score=91.80 Aligned_cols=46 Identities=57% Similarity=0.905 Sum_probs=43.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCC-eEEECCE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGN-FLVVNGN 68 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~-~l~v~~~ 68 (70)
+.++++++||+ +++++++|||+|||+||+|+++++++++ .|.+||+
T Consensus 24 ~~~~ivaind~-~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~ 70 (327)
T TIGR01534 24 LDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGK 70 (327)
T ss_pred CceEEEEEecC-CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCe
Confidence 46999999999 5999999999999999999999999999 7999998
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Probab=99.32 E-value=8e-13 Score=94.25 Aligned_cols=48 Identities=52% Similarity=0.998 Sum_probs=44.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
.++++++||||..++++++|||||||+||+|++.+++ +++.|.+||++
T Consensus 108 ~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~ 156 (421)
T PLN02272 108 DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQ 156 (421)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEE
Confidence 3699999999877999999999999999999999997 88999999975
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Back Show alignment and domain information
Probab=99.31 E-value=1.1e-12 Score=93.99 Aligned_cols=47 Identities=38% Similarity=0.566 Sum_probs=43.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
+++++++|||+ .++++++|||||||+||+|++.++. +++.|++||++
T Consensus 100 ~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~ 147 (442)
T PLN02237 100 SPLDVVVVNDS-GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKP 147 (442)
T ss_pred CCeEEEEECCC-CCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEE
Confidence 46999999998 4999999999999999999999986 88999999975
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.28 E-value=1.7e-12 Score=90.29 Aligned_cols=48 Identities=35% Similarity=0.650 Sum_probs=44.8
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++|||.+++++++|||||||+||+|+++++.+++.|.+||++
T Consensus 25 ~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~ 72 (334)
T PRK08955 25 PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKR 72 (334)
T ss_pred CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEE
Confidence 469999999976799999999999999999999999999999999975
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.27 E-value=2.6e-12 Score=89.50 Aligned_cols=47 Identities=34% Similarity=0.566 Sum_probs=44.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+. ++++++|||||||+||+|+++++.+++.|++||++
T Consensus 27 ~~l~vvaind~~-~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~ 73 (336)
T PRK13535 27 AEITVVAINELA-DAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDA 73 (336)
T ss_pred CceEEEEecCCC-CHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence 469999999985 99999999999999999999999999999999985
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Probab=99.26 E-value=4.8e-12 Score=88.18 Aligned_cols=48 Identities=44% Similarity=0.843 Sum_probs=42.8
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccc-eEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNG-EVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~-~~~~-~~~~l~v~~~~ 69 (70)
++++++++|||..++++++|||||||+||+|++ +++. +++.|.+||++
T Consensus 28 ~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~ 77 (338)
T PLN02358 28 DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 77 (338)
T ss_pred CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEE
Confidence 469999999977799999999999999999996 8998 55679999975
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Show alignment and domain information
Probab=99.25 E-value=3.7e-12 Score=79.92 Aligned_cols=48 Identities=48% Similarity=0.716 Sum_probs=44.4
Q ss_pred cceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 21 ~~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.+.+++++++|+ .++++++|||+|||+||+|+.+++.+++.|+|||++
T Consensus 22 ~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~ 69 (149)
T smart00846 22 RPDIEVVAINDL-TDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKK 69 (149)
T ss_pred CCCCEEEEeecC-CCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEE
Confidence 357999999998 599999999999999999999999999999999975
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.24 E-value=3.8e-12 Score=89.37 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=45.2
Q ss_pred CeeeecccCCcccCCCcEEe--------cc--------eEEEE-EEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA--------DG--------NFLVV-AINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~--------~~--------~i~vv-ainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++|+. ++ +|.++ +..||. +++|-.+.. ..||| |+|....
T Consensus 47 ~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~I~~~~~~~dP~-~ipW~~~gvD~ViE~T-G~f~t~~ 119 (361)
T PTZ00434 47 FAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPA-DLPWGKLGVDYVIEST-GLFTDKL 119 (361)
T ss_pred eeeeeeeecCCCCcCCceeecccccccccCCEEEECCEEEEEEEecCChh-hCchhhcCCCEEEeCc-eeeccHH
Confidence 69999999999999999986 32 57876 889996 999998875 56999 9996543
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate
Back Show alignment and domain information
Probab=99.15 E-value=3.8e-12 Score=80.22 Aligned_cols=54 Identities=35% Similarity=0.599 Sum_probs=46.0
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .|+++...||. +++|-.+.+ ..||| |+|....
T Consensus 40 ~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~-~i~W~~~gvDiVvEcT-G~f~~~~ 103 (151)
T PF00044_consen 40 LAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE-EIPWGELGVDIVVECT-GKFRTRE 103 (151)
T ss_dssp HHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG-GSTHHHHTESEEEETS-SSTHSHH
T ss_pred hhhhhhccccccceecccccccceeEeecccccchhhhhhc-ccccccccccEEEecc-ccceecc
Confidence 5899999999999999998764 58888999996 999988775 67999 9996543
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.14 E-value=2.5e-11 Score=84.64 Aligned_cols=53 Identities=34% Similarity=0.480 Sum_probs=45.2
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++++..||. +++|.... +..+|+ |.|...
T Consensus 42 ~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~-~lpW~~~gvDiVle~t-G~~~s~ 104 (337)
T PTZ00023 42 MCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA-AIPWGKNGVDVVCEST-GVFLTK 104 (337)
T ss_pred hhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh-hCCccccCCCEEEEec-chhcCH
Confidence 6899999999999999998754 69999999996 99998765 477999 888543
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Back Show alignment and domain information
Probab=99.14 E-value=2e-11 Score=76.58 Aligned_cols=54 Identities=37% Similarity=0.586 Sum_probs=45.0
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .++++...+|. +++|-.+.. ..||| |.|....
T Consensus 39 ~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~-~~~w~~~gvDiVie~t-G~f~~~~ 102 (149)
T smart00846 39 LAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA-NLPWKELGVDIVVECT-GKFTTRE 102 (149)
T ss_pred HHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH-HCcccccCCeEEEecc-ccccchH
Confidence 5899999999999999887654 58889999995 999988864 66998 9986543
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.10 E-value=2.4e-11 Score=87.71 Aligned_cols=54 Identities=39% Similarity=0.601 Sum_probs=46.5
Q ss_pred CeeeecccCCcccCCCcEEec--c--------eEEEEEEcCCcccccceeeeE----EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKAD--G--------NFLVVAINDPFIGVDYMVYLF----KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~--~--------~i~vvainDp~~~~~~~~~ll----~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++|+.+ + .|+++..+||. +++|-.+.+ ..||| |.|..+.
T Consensus 174 ~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~-~i~W~~~Gvd~aiVID~T-G~f~~~~ 241 (477)
T PRK08289 174 RASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPE-EVDYTAYGINNALVVDNT-GKWRDEE 241 (477)
T ss_pred HHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChH-HCCchhcCCCeEEEEeCc-cccCCHH
Confidence 589999999999999999886 2 69999999996 999998874 56999 9997553
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase
Back Show alignment and domain information
Probab=99.09 E-value=5.6e-11 Score=82.46 Aligned_cols=47 Identities=45% Similarity=0.689 Sum_probs=43.7
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||.. ++++++|||+|||+||+|+++++.+++.|++||++
T Consensus 25 ~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 71 (325)
T TIGR01532 25 LGIEVVALNELA-DQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC 71 (325)
T ss_pred CCeEEEEEecCC-CHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE
Confidence 359999999984 99999999999999999999999999999999975
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=99.07 E-value=4e-11 Score=83.44 Aligned_cols=46 Identities=52% Similarity=0.836 Sum_probs=43.4
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++||+ .+++++|||++|||+||+|++.++.+++.+.+||+.
T Consensus 26 dieVVaInd~-t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~ 71 (335)
T COG0057 26 DIEVVAINDL-TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKG 71 (335)
T ss_pred CeEEEEEecC-CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCce
Confidence 6999999998 599999999999999999999999999999999964
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.07 E-value=7.8e-11 Score=85.05 Aligned_cols=47 Identities=32% Similarity=0.499 Sum_probs=41.9
Q ss_pred ceEEEEEEc----CCcccccceeeeEEEecCCccccceEEee--CCeEEECCEE
Q psy6887 22 GNFLVVAIN----DPFIGVDYMVYLFKYDSTHGKFNGEVKAD--GNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvain----Dp~~~~~~~~~ll~yDSthG~~~~~~~~~--~~~l~v~~~~ 69 (70)
+.+++++|| |. .+++.++|||+|||+||+|++.++++ ++.|+|||++
T Consensus 154 ~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~ 206 (477)
T PRK08289 154 NGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNY 206 (477)
T ss_pred CCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEE
Confidence 369999994 66 59999999999999999999999987 7899999975
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Probab=99.05 E-value=9.6e-11 Score=83.17 Aligned_cols=47 Identities=43% Similarity=0.587 Sum_probs=42.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEe-eCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKA-DGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~-~~~~l~v~~~~ 69 (70)
+.+++++|||+. ++++++|||+|||+||+|+++++. +++.|+|||++
T Consensus 85 ~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~ 132 (395)
T PLN03096 85 SPLDVVAINDTG-GVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKV 132 (395)
T ss_pred CCeEEEEEcCCC-CHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEE
Confidence 358999999985 999999999999999999999976 67889999975
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.05 E-value=8.5e-11 Score=82.18 Aligned_cols=53 Identities=34% Similarity=0.561 Sum_probs=43.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++.+..||. +++|-... +..+|+ |.|...
T Consensus 41 ~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~W~~~gvDiVle~t-G~f~s~ 103 (343)
T PRK07729 41 LAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK-ELPWTDLGIDIVIEAT-GKFNSK 103 (343)
T ss_pred HHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh-hCcccccCCCEEEEcc-chhhhH
Confidence 6899999999999999998754 68888889995 99995544 577999 988543
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.05 E-value=6.4e-11 Score=82.62 Aligned_cols=53 Identities=30% Similarity=0.479 Sum_probs=44.4
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ +|++....||. .++|..+. +.++|+ |.|...
T Consensus 42 ~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~W~~~gvDiV~e~t-G~f~s~ 104 (337)
T PRK07403 42 NAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNPL-NLPWKEWGIDLIIEST-GVFVTK 104 (337)
T ss_pred HHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCcc-cCChhhcCCCEEEecc-chhhhH
Confidence 6899999999999999998754 68888888996 99998655 477999 988543
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Probab=99.05 E-value=8.5e-11 Score=81.85 Aligned_cols=53 Identities=36% Similarity=0.602 Sum_probs=43.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .|++.+..||. ..+|..+. +..+|| |.|...
T Consensus 41 ~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~-~~~w~~~gvDiVle~t-G~f~s~ 103 (331)
T PRK15425 41 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA-NLKWDEVGVDVVAEAT-GLFLTD 103 (331)
T ss_pred HHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh-hCcccccCCCEEEEec-chhhcH
Confidence 6899999999999999998754 57888888996 99998554 577999 998643
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Back Show alignment and domain information
Probab=98.98 E-value=2.5e-10 Score=79.57 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=44.4
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeEEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+..+ .+++.+..+|. +.+|.---+..+|+ |.|...
T Consensus 42 ~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~-~~~w~gvDiVle~t-G~~~s~ 102 (334)
T PRK08955 42 LAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA-DTDWSGCDVVIEAS-GVMKTK 102 (334)
T ss_pred HHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh-hCCccCCCEEEEcc-chhhcH
Confidence 5899999999999999998754 57778888996 99998667788999 988543
>KOG0657|consensus
Back Show alignment and domain information
Probab=98.98 E-value=2.4e-10 Score=77.95 Aligned_cols=47 Identities=60% Similarity=1.028 Sum_probs=44.1
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
.++++++|||..+.++++|+++|||+||+|++.+++++.+++++|+.
T Consensus 10 ~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~~~~~~i~~G~~ 56 (285)
T KOG0657|consen 10 SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNP 56 (285)
T ss_pred CcccccccCcccccccccccccccccCCccccceeecCCceeecCce
Confidence 38999999999999999999999999999999999999999998864
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Probab=98.96 E-value=3.9e-10 Score=78.68 Aligned_cols=54 Identities=37% Similarity=0.617 Sum_probs=43.4
Q ss_pred CeeeecccCCcccCCC-cEEe-cc--------eEEEEEEcCCccccccee--eeEEEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNG-EVKA-DG--------NFLVVAINDPFIGVDYMV--YLFKYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~-~v~~-~~--------~i~vvainDp~~~~~~~~--~ll~yDSthG~~~~~~ 56 (70)
|||||||||+||+|++ +++. .+ ++++....||. ..+|.. --+..+|| |.|....
T Consensus 45 ~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~p~-~~~w~~~gvDiVie~t-G~~~s~~ 110 (338)
T PLN02358 45 MTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRNPE-DIPWGEAGADFVVEST-GVFTDKD 110 (338)
T ss_pred HHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCCcc-cCcccccCCCEEEEcc-cchhhHH
Confidence 6899999999999996 8877 22 68889999996 999954 44678999 9886543
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Back Show alignment and domain information
Probab=98.94 E-value=4e-10 Score=80.93 Aligned_cols=52 Identities=33% Similarity=0.479 Sum_probs=42.4
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceeee--EEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+. ++ .|++....||. +.+|..+. +..+|+ |.|..
T Consensus 116 ~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~-~l~W~~~gVDiViE~T-G~f~s 178 (442)
T PLN02237 116 ASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPL-KLPWAELGIDIVIEGT-GVFVD 178 (442)
T ss_pred HHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCch-hCChhhcCCCEEEEcc-Chhhh
Confidence 68999999999999999976 32 68888888995 99995444 577999 99854
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=98.92 E-value=6.4e-10 Score=77.80 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=42.4
Q ss_pred CeeeecccCCcccCC-CcEEecc---------eEEEEEEcCCcccccceeee--EEEecCCcccc
Q psy6887 1 MVYLFKYDSTHGKFN-GEVKADG---------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFN 53 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~-~~v~~~~---------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~ 53 (70)
|||||||||+||+|+ ++|+.++ .|++++..||. +.+|..+. +..+|| |.|.
T Consensus 42 ~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~dp~-~~~w~~~gvDiVie~T-G~f~ 104 (342)
T PTZ00353 42 IAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKHDLV-EIAWRDYGVQYVVECT-GLYS 104 (342)
T ss_pred HHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecCCcc-cCcccccCCCEEEEcc-cccc
Confidence 589999999999996 5887632 58899999996 99998654 577999 9994
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Back Show alignment and domain information
Probab=98.91 E-value=7.3e-10 Score=79.23 Aligned_cols=53 Identities=36% Similarity=0.688 Sum_probs=43.3
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+. ++ .|++.+..||. +.+|..+. +..+|+ |.|...
T Consensus 125 ~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp~-~~~w~~~gVDiVlesT-G~f~s~ 188 (421)
T PLN02272 125 MAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPA-EIPWGDFGAEYVVESS-GVFTTV 188 (421)
T ss_pred HHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCcc-cCcccccCCCEEEEcC-chhccH
Confidence 68999999999999999986 33 58888888996 99998544 577999 888653
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=98.88 E-value=1.1e-09 Score=76.48 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=42.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceee--eEEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVY--LFKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~--ll~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+..+ .|++.+..||. +.+|... -+..+|+ |.|..
T Consensus 43 ~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~-~~~w~~~gvDiVle~t-G~~~s 104 (336)
T PRK13535 43 MAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERDIA-SLPWRELGVDVVLDCT-GVYGS 104 (336)
T ss_pred HHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCcc-cCcccccCCCEEEEcc-chhhh
Confidence 6899999999999999998754 68888888996 9999544 4677999 88744
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=98.88 E-value=4.6e-10 Score=78.22 Aligned_cols=56 Identities=39% Similarity=0.644 Sum_probs=47.5
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEEe
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVKA 58 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~~ 58 (70)
+||||||||+||+|+++++.++ .|++.+..||. .++|..+. +..||| |.|.+....
T Consensus 41 ~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p~-~l~w~d~gvdiVve~T-g~f~~~e~~ 106 (335)
T COG0057 41 LAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDPA-NLPWADLGVDIVVECT-GKFTGREKA 106 (335)
T ss_pred HHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCChH-HCCccccCccEEEECC-CCccchhhH
Confidence 5899999999999999986643 69999999995 99999976 477999 999865543
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I
Back Show alignment and domain information
Probab=98.83 E-value=1.8e-09 Score=75.07 Aligned_cols=53 Identities=40% Similarity=0.704 Sum_probs=41.3
Q ss_pred CeeeecccCCcccCCCcEEecc----------eEEEEEEcCCcccccceeee--EEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG----------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~----------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~ 55 (70)
|||||||||+||+|+++|+.++ .+.+.+..||. ..+|..+. +..+|+ |.|...
T Consensus 40 ~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~dp~-~~~w~~~gvDiVle~t-G~~~s~ 104 (327)
T TIGR01534 40 LAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERDPS-DLPWKALGVDIVIECT-GKFRDK 104 (327)
T ss_pred HHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCCcc-cCchhhcCCCEEEEcc-chhhcH
Confidence 6899999999999999887632 35566667996 99998544 577999 988643
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase
Back Show alignment and domain information
Probab=98.76 E-value=4.3e-09 Score=73.12 Aligned_cols=52 Identities=35% Similarity=0.615 Sum_probs=42.8
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCccccccee--eeEEEecCCccccc
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMV--YLFKYDSTHGKFNG 54 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~--~ll~yDSthG~~~~ 54 (70)
|||||||||+||+|+++|+..+ .+++.+..||. +.+|.. --+..+|+ |.|..
T Consensus 41 ~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p~-~~~w~~~gvDiVie~t-G~~~s 102 (325)
T TIGR01532 41 MAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTPE-ALPWRALGVDLVLDCT-GVYGN 102 (325)
T ss_pred HHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCChh-hccccccCCCEEEEcc-chhcc
Confidence 5899999999999999998754 68888888996 999954 44678999 88744
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Back Show alignment and domain information
Probab=98.73 E-value=5.5e-09 Score=74.29 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.9
Q ss_pred CeeeecccCCcccCCCcEEe-cc--------eEEEEEEcCCcccccceee--eEEEecCCccccce
Q psy6887 1 MVYLFKYDSTHGKFNGEVKA-DG--------NFLVVAINDPFIGVDYMVY--LFKYDSTHGKFNGE 55 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~-~~--------~i~vvainDp~~~~~~~~~--ll~yDSthG~~~~~ 55 (70)
|||||+|||+||+|+++|+. .+ .|++....||. +.+|..+ -+..||| |.|...
T Consensus 101 ~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~-~~~w~~~gvDiVie~T-G~f~s~ 164 (395)
T PLN03096 101 ASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPL-NLPWGELGIDLVIEGT-GVFVDR 164 (395)
T ss_pred HHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcc-cccccccCCCEEEECc-chhhhH
Confidence 58999999999999998875 22 68888888996 9999544 4678999 998543
>KOG0657|consensus
Back Show alignment and domain information
Probab=98.55 E-value=9.2e-08 Score=65.42 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=46.1
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~~ 57 (70)
|+|+|||||+||+|+++++..+ .+.++...||. .++|..... ..+|+ |.|.....
T Consensus 26 ~~y~~kydsthG~f~g~~k~~~~~~i~~G~~i~~~~~~~p~-~i~w~~~g~~~v~e~t-g~f~t~e~ 90 (285)
T KOG0657|consen 26 LAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDPA-KIPWGAKGADIVVEST-GVFTTMEK 90 (285)
T ss_pred ccccccccccCCccccceeecCCceeecCceEEeecccCcc-cCccccccceeEeecc-cccccccc
Confidence 6899999999999999999876 57888889995 999999876 55998 98865443
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II
Back Show alignment and domain information
Probab=96.39 E-value=0.0011 Score=46.47 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=35.5
Q ss_pred ceEEEEEEcCCccccc---ceeeeEEEecCCccccceEEeeCCeEEECCE
Q psy6887 22 GNFLVVAINDPFIGVD---YMVYLFKYDSTHGKFNGEVKADGNFLVVNGN 68 (70)
Q Consensus 22 ~~i~vvainDp~~~~~---~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~ 68 (70)
++++++++||+ +++ +++++++|||+|+.+...++.+++.+.++|+
T Consensus 21 ~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~ 68 (333)
T TIGR01546 21 DDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT 68 (333)
T ss_pred CCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence 57899999994 677 7778889999995444467788888888774
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 70
d1dssg1 169
c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp
1e-13 d1dssg1 169
c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp
1e-04 d1u8fo1 169
c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp
2e-12 d1u8fo1 169
c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp
5e-05 d1gado1 166
c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp
1e-11 d1gado1 166
c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp
2e-05 d1hdgo1 169
c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp
5e-10 d1hdgo1 169
c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp
8e-04 d2b4ro1 166
c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp
2e-09 d1rm4a1 172
c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp
7e-08 d3cmco1 171
c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp
3e-07 d1k3ta1 190
c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp
5e-07 d1obfo1 173
c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp
3e-06 d2g82a1 168
c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp
0.002
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Score = 59.5 bits (144), Expect = 1e-13
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 26 VVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
VVA+NDPFI ++YMVY+FKYDSTHG F GEVKA+ LVV+G K
Sbjct: 26 VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Score = 35.3 bits (81), Expect = 1e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
MVY+FKYDSTHG F GEVKA+ LVV
Sbjct: 39 MVYMFKYDSTHGMFKGEVKAEDGALVV 65
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Score = 56.5 bits (136), Expect = 2e-12
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
G +VAINDPFI ++YMVY+F+YDSTHGKF+G VKA+ LV+NGN
Sbjct: 23 SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNP 71
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Score = 36.8 bits (85), Expect = 5e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV--------AINDPF------IGVDYMVYLFKYD 46
MVY+F+YDSTHGKF+G VKA+ LV+ DP G +Y+V
Sbjct: 41 MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVV------ 94
Query: 47 STHGKFNGEVKA 58
+ G F KA
Sbjct: 95 ESTGVFTTMEKA 106
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]
Score = 54.2 bits (130), Expect = 1e-11
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ +VAIND + DYM Y+ KYDSTHG+F+G V+ L+VNG K
Sbjct: 23 RSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (87), Expect = 2e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
M Y+ KYDSTHG+F+G V+ L+V
Sbjct: 40 MAYMLKYDSTHGRFDGTVEVKDGHLIV 66
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]
Score = 49.9 bits (119), Expect = 5e-10
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ + + VVAIND + +L KYDS H KF G+V+ N L+V+G +
Sbjct: 22 RKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]
Score = 33.3 bits (76), Expect = 8e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MVYLFKYDSTHGKFNGEVKADGNFLVV 27
+ +L KYDS H KF G+V+ N L+V
Sbjct: 41 LAHLLKYDSVHKKFPGKVEYTENSLIV 67
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 48.1 bits (114), Expect = 2e-09
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ VVAINDPF+ ++++ YL KYDS HG+F EV FL++ K
Sbjct: 23 KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 70
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 44.2 bits (104), Expect = 7e-08
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 19 KADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFL-VVNGNK 69
+ D VV IND GV +L KYDS G F+ +VK G+ V+G
Sbjct: 22 RKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKV 72
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Score = 42.7 bits (100), Expect = 3e-07
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 21 DGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
+ + VVA+ND + + +L KYDS HG+ + EV +GN LVVNG +
Sbjct: 23 NPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]
Score = 42.0 bits (98), Expect = 5e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLV 64
VVA+ D +Y Y +YD+ HGKF EV +
Sbjct: 30 EIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPS 71
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]
Score = 40.0 bits (93), Expect = 3e-06
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 17 EVKADGNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69
E + +VAIND +L +YD+ HGKF G V +G+++VVNG+K
Sbjct: 22 EGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDK 73
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]
Score = 32.4 bits (73), Expect = 0.002
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVN 66
V IND + +L KYDS + +F GEV D +L V+
Sbjct: 23 GVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVD 65
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 70
d2b4ro1 166
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.47 d1gado1 166
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.45 d1hdgo1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.44 d1obfo1 173
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.42 d1dssg1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.41 d1u8fo1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.41 d3cmco1 171
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.4 d2g82a1 168
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.35 d1rm4a1 172
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.28 d2b4ro1 166
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.23 d1gado1 166
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.23 d2g82a1 168
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.22 d1hdgo1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.21 d1obfo1 173
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.21 d1u8fo1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.2 d1dssg1 169
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.19 d1k3ta1 190
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.18 d3cmco1 171
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.16 d1rm4a1 172
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.15 d1k3ta1 190
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
99.01 d1b7go1 178
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {
92.73
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.47 E-value=3.9e-15 Score=92.49 Aligned_cols=48 Identities=46% Similarity=0.824 Sum_probs=45.2
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+.++++++|||.+++++++|||+|||+||+|+.+++.+++.|+|||++
T Consensus 23 ~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~ 70 (166)
T d2b4ro1 23 KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKK 70 (166)
T ss_dssp SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCE
T ss_pred CCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcE
Confidence 469999999987799999999999999999999999999999999975
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=6.9e-15 Score=91.53 Aligned_cols=47 Identities=51% Similarity=0.952 Sum_probs=44.5
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+ .++++++|||+|||+||+|++.++++++.|+|||++
T Consensus 24 ~~i~ivaINd~-~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~ 70 (166)
T d1gado1 24 SDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKK 70 (166)
T ss_dssp SSEEEEEEECS-SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEE
T ss_pred CCeEEEEEeCC-CCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEE
Confidence 46999999998 599999999999999999999999999999999986
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=6.4e-15 Score=91.86 Aligned_cols=47 Identities=43% Similarity=0.605 Sum_probs=44.3
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+.++++++||+. +++.++|||+|||+||+|+.+++++++.|+|||++
T Consensus 25 ~~i~vvaINd~~-~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~ 71 (169)
T d1hdgo1 25 PDIEVVAINDLT-DTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71 (169)
T ss_dssp TTCEEEEEECSS-CHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEE
T ss_pred CCEEEEEeccCc-cHHHHHHHHhccccccccCceEEEECCEEEECCEE
Confidence 359999999994 99999999999999999999999999999999986
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.42 E-value=2e-14 Score=89.73 Aligned_cols=47 Identities=43% Similarity=0.692 Sum_probs=44.4
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+.++++++||+ .++++++|||+|||+||+|+..++.+++.|+|||++
T Consensus 27 ~~~~vvaINd~-~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~ 73 (173)
T d1obfo1 27 HDIEIVAINDL-GDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDK 73 (173)
T ss_dssp SSEEEEEEECS-SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEE
T ss_pred CCeEEEEEcCC-CChHHHHHhhcccccCCCcCceEEeccceEEECCEE
Confidence 47999999999 599999999999999999999999999999999985
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=99.41 E-value=1.4e-14 Score=90.22 Aligned_cols=47 Identities=66% Similarity=1.113 Sum_probs=44.4
Q ss_pred eEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 23 NFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 23 ~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+++++++|||.++++.++|||+|||+||+|+.+++++++.|+|||++
T Consensus 23 ~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~ 69 (169)
T d1dssg1 23 GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKK 69 (169)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEE
T ss_pred CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEE
Confidence 57999999987799999999999999999999999999999999985
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.41 E-value=1.8e-14 Score=89.78 Aligned_cols=48 Identities=65% Similarity=1.132 Sum_probs=45.0
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++|||.+++++++|||+|||+||+|+.+++++++.|+|||++
T Consensus 24 ~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~ 71 (169)
T d1u8fo1 24 GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNP 71 (169)
T ss_dssp CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEE
T ss_pred CCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEE
Confidence 468999999987799999999999999999999999999999999975
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.40 E-value=2.6e-14 Score=89.17 Aligned_cols=47 Identities=45% Similarity=0.710 Sum_probs=44.4
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
++++++++||+. ++++++|||+|||+||+|+..++.+++.|++||++
T Consensus 24 ~~~~ivaINd~~-d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~ 70 (171)
T d3cmco1 24 PDIEVVAVNDLT-DANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKE 70 (171)
T ss_dssp TTEEEEEEECSS-CHHHHHHHHHEETTTEECSSCEEEETTEEEETTEE
T ss_pred CCcEEEEEcCCC-CHHHHhhhhcccccCCcccccccccCCCEEeCCcc
Confidence 469999999995 99999999999999999999999999999999975
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]
Probab=99.35 E-value=5e-14 Score=87.53 Aligned_cols=47 Identities=36% Similarity=0.496 Sum_probs=44.1
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~l~v~~~~ 69 (70)
+.++++++||+. +++.++|||+|||+||+|+..++.+++.|+|||++
T Consensus 22 ~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~ 68 (168)
T d2g82a1 22 RGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKA 68 (168)
T ss_dssp HTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEE
T ss_pred CCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEeccee
Confidence 358999999995 99999999999999999999999999999999985
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.28 E-value=2.9e-13 Score=84.34 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=41.6
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeCCe-EEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADGNF-LVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~~~-l~v~~~~ 69 (70)
+.++++++|||. ++++++|||+|||+||+|+..++.+++. +++||++
T Consensus 25 ~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~ 72 (172)
T d1rm4a1 25 SPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKV 72 (172)
T ss_dssp CSEEEEEEECTT-CHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEE
T ss_pred CCEEEEEEcCCC-CHHHHHHHHhcCcccccccceeEecCCcceEECCEE
Confidence 359999999995 9999999999999999999999876655 6799975
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.23 E-value=4.4e-13 Score=83.08 Aligned_cols=54 Identities=35% Similarity=0.505 Sum_probs=46.5
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .+++...+||+ +++|..+. +..||| |+|....
T Consensus 40 ~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~-~i~W~~~gvdiViEcT-G~f~~~~ 103 (166)
T d2b4ro1 40 LCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS-QIPWGKCQVDVVCEST-GVFLTKE 103 (166)
T ss_dssp HHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG-GCCHHHHTCSEEEECS-SSCCSHH
T ss_pred hhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH-HccccccCCCEEEEec-ccccchh
Confidence 5899999999999999999875 68888999996 99999776 477999 9997643
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=5.4e-13 Score=82.83 Aligned_cols=55 Identities=35% Similarity=0.570 Sum_probs=47.1
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
|||||||||+||+|+++++.++ .|.+....+|. +++|-.+. +..||| |+|....+
T Consensus 40 ~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~-~i~W~~~gvDiViEcT-G~f~t~~~ 104 (166)
T d1gado1 40 MAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA-NLKWDEVGVDVVAEAT-GLFLTDET 104 (166)
T ss_dssp HHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG-GGCHHHHTCSEEEECS-SSCCSHHH
T ss_pred HhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChH-HCCccccCCCEEEEcc-ccccCHHH
Confidence 5899999999999999999875 68899999996 99998775 577999 99976543
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]
Probab=99.22 E-value=1.1e-12 Score=81.36 Aligned_cols=54 Identities=31% Similarity=0.434 Sum_probs=46.1
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++..+ .|.+....||. +++|..+. +..||| |+|....
T Consensus 38 ~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~-~i~W~~~gvdiViEcT-G~f~~~~ 101 (168)
T d2g82a1 38 LAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK-EIPWAEAGVGVVIEST-GVFTDAD 101 (168)
T ss_dssp HHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG-GCCTGGGTEEEEEECS-SSCCBHH
T ss_pred hhheeecccccCccccccccccceeEecceeEEEEecCChH-HCcccccCCceeEecc-ccccchH
Confidence 5899999999999999999875 57888889996 99999875 466999 9997643
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=7.2e-13 Score=82.41 Aligned_cols=55 Identities=36% Similarity=0.495 Sum_probs=46.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
|||||||||+||+|+++++.++ .|++....+|. +++|..+. +..||| |+|....+
T Consensus 41 ~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p~-~i~W~~~gvD~ViEcT-G~f~t~~~ 105 (169)
T d1hdgo1 41 LAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDPS-KLPWKDLGVDFVIEST-GVFRNREK 105 (169)
T ss_dssp HHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSGG-GSCHHHHTCCEEEECS-SSCCBHHH
T ss_pred HHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCChh-hCCccccCCCEEEEec-ceeccccc
Confidence 5899999999999999999965 68899999996 99998765 477999 99976443
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.21 E-value=6.6e-13 Score=82.74 Aligned_cols=55 Identities=31% Similarity=0.472 Sum_probs=46.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
|||||||||+||+|+++++.++ .++++..+||+ +++|-.+. +..||| |+|.....
T Consensus 43 ~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~-~i~W~~~gvDiViEcT-G~f~~~~~ 107 (173)
T d1obfo1 43 NAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNPA-QLPWGALKVDVVLECT-GFFTTKEK 107 (173)
T ss_dssp HHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCGG-GSCTTTTTCSEEEECS-SSCCSHHH
T ss_pred HHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCHH-HCcccccccceEEEec-ccccCHHH
Confidence 5899999999999999998865 68899999996 99998875 577999 99976443
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.20 E-value=1e-12 Score=81.73 Aligned_cols=55 Identities=42% Similarity=0.663 Sum_probs=46.9
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
+||||||||+||+|+++++.++ .+.++...+|. +++|..+. +..||| |+|....+
T Consensus 41 ~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~-~i~W~~~~vDiViEcT-G~f~~~~~ 105 (169)
T d1u8fo1 41 MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS-KIKWGDAGAEYVVEST-GVFTTMEK 105 (169)
T ss_dssp HHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG-GCCTTTTTCCEEEECS-SSCCSHHH
T ss_pred HHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh-hCCccccCCCEEEEec-ceeccHHH
Confidence 4899999999999999999875 68888899996 99998865 477999 99976544
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=99.19 E-value=7.5e-13 Score=82.31 Aligned_cols=55 Identities=44% Similarity=0.643 Sum_probs=46.8
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
|+|||||||+||+|+++++..+ .|.+....+|. +++|..+. +..||| |+|....+
T Consensus 39 ~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~-~i~W~~~gvD~ViEcT-G~f~~~~~ 103 (169)
T d1dssg1 39 MVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE-NIPWSKAGAEYIVEST-GVFTTIEK 103 (169)
T ss_dssp HHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG-GCCHHHHTCCEEEECS-SSCCSHHH
T ss_pred HHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH-HCCccccCCCEEEecC-ceEcCHHH
Confidence 5899999999999999999875 68888889996 99999865 477999 99976543
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.18 E-value=2.3e-12 Score=81.25 Aligned_cols=48 Identities=40% Similarity=0.651 Sum_probs=41.1
Q ss_pred ceEEEEEEcCCcccccceeeeEEEecCCccccceEEeeC--------CeEEECCEE
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLFKYDSTHGKFNGEVKADG--------NFLVVNGNK 69 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll~yDSthG~~~~~~~~~~--------~~l~v~~~~ 69 (70)
++++++++||+.+++++++|||+|||+||+|+++++.++ +.++++|++
T Consensus 29 ~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g~~ 84 (190)
T d1k3ta1 29 TEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHR 84 (190)
T ss_dssp TTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEETTEE
T ss_pred CCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEEcCce
Confidence 369999999997799999999999999999999998754 446777753
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.16 E-value=1.4e-12 Score=81.22 Aligned_cols=54 Identities=33% Similarity=0.555 Sum_probs=46.3
Q ss_pred CeeeecccCCcccCCCcEEecc--------eEEEEEEcCCcccccceeeeE--EEecCCccccceE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG--------NFLVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEV 56 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~--------~i~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~ 56 (70)
|||||||||+||+|+++++.++ .+.+....||. +++|..+.. ..||| |+|....
T Consensus 40 ~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~-~i~W~~~~vDiViEcT-G~f~t~~ 103 (171)
T d3cmco1 40 LAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE-NLAWGEIGVDIVVEST-GRFTKRE 103 (171)
T ss_dssp HHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG-GCCTGGGTCCEEEECS-SSCCBHH
T ss_pred HhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH-HccccccCCcEEEEec-CccCCHH
Confidence 5899999999999999999875 58888899996 999998764 66999 9997643
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.15 E-value=1.8e-12 Score=80.64 Aligned_cols=55 Identities=29% Similarity=0.408 Sum_probs=45.7
Q ss_pred CeeeecccCCcccCCCcEEecc---------eEEEEEEcCCcccccceeee--EEEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG---------NFLVVAINDPFIGVDYMVYL--FKYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~---------~i~vvainDp~~~~~~~~~l--l~yDSthG~~~~~~~ 57 (70)
|||||||||+||+|+++++..+ .|.+....+|. +++|..+. +..||| |+|....+
T Consensus 41 ~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p~-~i~W~~~gvDiViEcT-G~f~~~~~ 106 (172)
T d1rm4a1 41 ASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPV-NLPWGDMGIDLVIEGT-GVFVDRDG 106 (172)
T ss_dssp HHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCGG-GSCHHHHTCCEEEECS-SSCCBHHH
T ss_pred HHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCChH-HCChhhcCCCEEEecC-ceEccHHH
Confidence 5899999999999999888753 58888889996 99998764 577999 99976443
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.01 E-value=1.4e-11 Score=77.62 Aligned_cols=55 Identities=29% Similarity=0.464 Sum_probs=42.1
Q ss_pred CeeeecccCCcccCCCcEEecc----------------eE-EEEEEcCCcccccceeeeE--EEecCCccccceEE
Q psy6887 1 MVYLFKYDSTHGKFNGEVKADG----------------NF-LVVAINDPFIGVDYMVYLF--KYDSTHGKFNGEVK 57 (70)
Q Consensus 1 ~a~ll~~Ds~~g~~~~~v~~~~----------------~i-~vvainDp~~~~~~~~~ll--~yDSthG~~~~~~~ 57 (70)
|||||||||+||+|+++|+... .+ .+....||. +++|..+.. ..||| |.|....+
T Consensus 46 ~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g~~i~~~~~~~~p~-~i~W~~~gvDiViEcT-G~f~~~~~ 119 (190)
T d1k3ta1 46 FAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPA-DLPWGKLGVEYVIEST-GLFTAKAA 119 (190)
T ss_dssp HHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEETTEEEEEEECCSCGG-GSCHHHHTCCEEEECS-SSCCBHHH
T ss_pred HHHHhhccccccCCCceEEEccCccccccccceEEcCceEEecccCCChh-HCCHhhcCCcEEEEec-cccccccc
Confidence 5899999999999999998742 11 233467886 999998764 77999 99976443
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.73 E-value=0.0007 Score=41.08 Aligned_cols=45 Identities=9% Similarity=-0.102 Sum_probs=30.7
Q ss_pred ceEEEEEEcCCcccccceeeeE-EEecCCccccceEEeeCCeEEECC
Q psy6887 22 GNFLVVAINDPFIGVDYMVYLF-KYDSTHGKFNGEVKADGNFLVVNG 67 (70)
Q Consensus 22 ~~i~vvainDp~~~~~~~~~ll-~yDSthG~~~~~~~~~~~~l~v~~ 67 (70)
++++++++||+. +.....+++ ++++.|+.+......+++.+.++|
T Consensus 24 ~dievVaInd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g 69 (178)
T d1b7go1 24 PDMKLVGVAKTS-PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAG 69 (178)
T ss_dssp TTEEEEEEECSS-CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCC
T ss_pred CCCEEEEEECCC-CcHHHHHhcccCcceeccCccceeccccceecCC
Confidence 469999999985 555555555 456777777766666666666655
