Psyllid ID: psy6972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEccEEEEEHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccc
Coil and Loop (DISEMBL)
nysclkvdliftrdrafyfttvfiPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNffttsngfrstlpvvsnltamnvWDGVCMCFIYASLLEFVCVNyvgrkrplhnvvyrpgenpvtqtfqrntyhksm
Flexible Loop (DISEMBL)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLhnvvyrpgenpvtqtfqrntyhksm
Low Complexity Region (SEG)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM
Disordered region (IsUnstruct)
**SCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRP******************
Disordered Region (DISOPRED)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYV*******************************
Disordered Region (DISEMBL)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM
Disordered Region (DISPRO)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHN***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q94900	456	Glutamate-gated chloride	no	N/A	0.781	0.228	0.490	2e-25
Q7TNC8	452	Glycine receptor subunit	yes	N/A	0.796	0.234	0.377	6e-21
P22771	452	Glycine receptor subunit	yes	N/A	0.796	0.234	0.377	6e-21
P23416	452	Glycine receptor subunit	no	N/A	0.796	0.234	0.377	7e-21
Q61603	456	Glycine receptor subunit	no	N/A	0.796	0.232	0.377	1e-20
Q5JXX5	417	Glycine receptor subunit	no	N/A	0.796	0.254	0.367	1e-20
P24524	464	Glycine receptor subunit	no	N/A	0.789	0.226	0.371	2e-20
Q91XP5	464	Glycine receptor subunit	no	N/A	0.789	0.226	0.371	2e-20
O75311	464	Glycine receptor subunit	no	N/A	0.789	0.226	0.371	2e-20
P07727	457	Glycine receptor subunit	no	N/A	0.781	0.227	0.375	3e-20

>sp|Q94900|GLUCL_DROME Glutamate-gated chloride channel OS=Drosophila melanogaster GN=GluClalpha PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 74/104 (71%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            YSCLKVDL+F R+ ++Y   ++IP  +LV  S+++FWL+  AVPARV +GVTT+L   T
Sbjct: 230 EYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMAT 289

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGR 104
            ++G  ++LP VS   A++VW GVC+ F++ +LLEF  VNY  R
Sbjct: 290 QTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASR 333

Glutamate gated chloride channel that is dual gated by glutamate and avermectin.
Drosophila melanogaster (taxid: 7227)

>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 72/106 (67%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 240 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 299

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+ 
Sbjct: 300 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQH 345

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 72/106 (67%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 240 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 299

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+ 
Sbjct: 300 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQH 345

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 72/106 (67%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 240 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 299

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+ 
Sbjct: 300 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQH 345

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 72/106 (67%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 240 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTT 299

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+ 
Sbjct: 300 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQH 345

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing). May play a role in the maturation of reproductive organs.

Mus musculus (taxid: 10090)

>sp|Q5JXX5|GLRA4_HUMAN Glycine receptor subunit alpha-4 OS=Homo sapiens GN=GLRA4 PE=2 SV=3

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 72/106 (67%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 241 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTT 300

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            S+G R++LP VS + A+++W  VC+ F++A+LLE+  +N+V R+ 
Sbjct: 301 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSRQH 346

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 72/105 (68%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 239 KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 298

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
            S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+
Sbjct: 299 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 72/105 (68%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 239 KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 298

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
            S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+
Sbjct: 299 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 72/105 (68%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T
Sbjct: 239 KFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT 298

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
            S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+
Sbjct: 299 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 343

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1 SV=4

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 71/104 (68%)

Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           ++C++      R   +Y   ++IP +++V  S+I+FW+  +A PARV +G+TT+L   T 
Sbjct: 235 FTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQ 294

Query: 62  SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
           S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+
Sbjct: 295 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQ 338

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
442632608	929	pHCl, isoform O [Drosophila melanogaster	1.0	0.143	0.924	3e-70
281366268	681	pHCl, isoform G [Drosophila melanogaster	0.917	0.179	0.983	5e-70
116007102	762	pHCl, isoform E [Drosophila melanogaster	0.917	0.160	0.983	6e-70
116007100	779	pHCl, isoform F [Drosophila melanogaster	0.917	0.156	0.983	7e-70
386771196	754	pHCl, isoform I [Drosophila melanogaster	0.917	0.161	0.983	8e-70
442632600	746	pHCl, isoform K [Drosophila melanogaster	0.917	0.163	0.983	1e-69
442632604	954	pHCl, isoform M [Drosophila melanogaster	1.0	0.139	0.909	3e-69
442632606	978	pHCl, isoform N [Drosophila melanogaster	0.917	0.124	0.967	5e-69
194873121	968	GG13514 [Drosophila erecta] gi|190654926	0.917	0.126	0.967	5e-69
442632610	754	pHCl, isoform P [Drosophila melanogaster	0.947	0.167	0.944	5e-69

>gi|442632608|ref|NP_001261899.1| pHCl, isoform O [Drosophila melanogaster] gi|440215845|gb|AGB94592.1| pHCl, isoform O [Drosophila melanogaster]

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/133 (92%), Positives = 124/133 (93%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 523 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 582

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 583 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 642

Query: 121 TQTFQRNTYHKSM 133
           TQ     T   SM
Sbjct: 643 TQASAAATPAMSM 655

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281366268|ref|NP_001163450.1| pHCl, isoform G [Drosophila melanogaster] gi|272455206|gb|ACZ94721.1| pHCl, isoform G [Drosophila melanogaster]

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 555 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 614

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 674

Query: 121 TQ 122
           TQ
Sbjct: 675 TQ 676

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007102|ref|NP_001034025.2| pHCl, isoform E [Drosophila melanogaster] gi|113194906|gb|ABC66135.2| pHCl, isoform E [Drosophila melanogaster]

 Score =  268 bits (684), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 555 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 614

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 674

Query: 121 TQ 122
           TQ
Sbjct: 675 TQ 676

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007100|ref|NP_001034024.2| pHCl, isoform F [Drosophila melanogaster] gi|113194904|gb|ABC66136.2| pHCl, isoform F [Drosophila melanogaster]

 Score =  268 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 555 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 614

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 674

Query: 121 TQ 122
           TQ
Sbjct: 675 TQ 676

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386771196|ref|NP_001246782.1| pHCl, isoform I [Drosophila melanogaster] gi|383291947|gb|AFH04453.1| pHCl, isoform I [Drosophila melanogaster]

 Score =  267 bits (683), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 530 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 589

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 590 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 649

Query: 121 TQ 122
           TQ
Sbjct: 650 TQ 651

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632600|ref|NP_001261895.1| pHCl, isoform K [Drosophila melanogaster] gi|440215841|gb|AGB94588.1| pHCl, isoform K [Drosophila melanogaster]

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct: 523 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 582

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 583 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 642

Query: 121 TQ 122
           TQ
Sbjct: 643 TQ 644

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632604|ref|NP_001261897.1| pHCl, isoform M [Drosophila melanogaster] gi|440215843|gb|AGB94590.1| pHCl, isoform M [Drosophila melanogaster]

 Score =  266 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 121/133 (90%), Positives = 124/133 (93%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+V+L FTRDRA+YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT
Sbjct: 548 NYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 607

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 608 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 667

Query: 121 TQTFQRNTYHKSM 133
           TQ     T   SM
Sbjct: 668 TQASAAATPAMSM 680

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632606|ref|NP_001261898.1| pHCl, isoform N [Drosophila melanogaster] gi|440215844|gb|AGB94591.1| pHCl, isoform N [Drosophila melanogaster]

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/122 (96%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+V+L FTRDRA+YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT
Sbjct: 555 NYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 614

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 674

Query: 121 TQ 122
           TQ
Sbjct: 675 TQ 676

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194873121|ref|XP_001973143.1| GG13514 [Drosophila erecta] gi|190654926|gb|EDV52169.1| GG13514 [Drosophila erecta]

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/122 (96%), Positives = 121/122 (99%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+V+L FTRDRA+YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT
Sbjct: 603 NYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 662

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 663 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 722

Query: 121 TQ 122
           TQ
Sbjct: 723 TQ 724

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442632610|ref|NP_001261900.1| pHCl, isoform P [Drosophila melanogaster] gi|440215846|gb|AGB94593.1| pHCl, isoform P [Drosophila melanogaster]

 Score =  265 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 119/126 (94%), Positives = 123/126 (97%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
           NYSCL+V+L FTRDRA+YFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT
Sbjct: 548 NYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 607

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
           TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct: 608 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 667

Query: 121 TQTFQR 126
           TQ  +R
Sbjct: 668 TQGEKR 673

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0264908	779	pHCl [Drosophila melanogaster	0.917	0.156	0.983	4.2e-63
FB|FBgn0024963	456	GluClalpha "GluClalpha" [Droso	0.774	0.225	0.495	9.6e-25
WB|WBGene00000232	430	avr-14 [Caenorhabditis elegans	0.781	0.241	0.490	1.5e-23
WB|WBGene00001591	461	glc-1 [Caenorhabditis elegans	0.789	0.227	0.438	5.2e-21
UNIPROTKB|E2QZJ3	374	GLRA2 "Uncharacterized protein	0.781	0.278	0.384	7.6e-21
UNIPROTKB|F1SQV0	385	GLRA2 "Uncharacterized protein	0.781	0.270	0.384	9.6e-21
UNIPROTKB|K7GSI6	385	GLRA2 "Uncharacterized protein	0.781	0.270	0.384	9.6e-21
UNIPROTKB|F1MNR0	375	GLRA3 "Uncharacterized protein	0.969	0.344	0.323	1.4e-20
UNIPROTKB|F1RJ16	376	GLRA3 "Uncharacterized protein	0.969	0.343	0.323	1.8e-20
UNIPROTKB|E1BTB5	452	GLRA2 "Uncharacterized protein	0.781	0.230	0.384	2.2e-20

FB|FBgn0264908 pHCl [Drosophila melanogaster (taxid:7227)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query:     1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
             NYSCL+VDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR MIGVTTMLNFFT
Sbjct:   555 NYSCLRVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARSMIGVTTMLNFFT 614

Query:    61 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 120
             TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV
Sbjct:   615 TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPV 674

Query:   121 TQ 122
             TQ
Sbjct:   675 TQ 676

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=ISS

GO:0016935 "glycine-gated chloride channel complex" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0024963 GluClalpha "GluClalpha" [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 9.6e-25, P = 9.6e-25
 Identities = 51/103 (49%), Positives = 74/103 (71%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             YSCLKVDL+F R+ ++Y   ++IP  +LV  S+++FWL+  AVPARV +GVTT+L   T 
Sbjct:   231 YSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQ 290

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGR 104
             ++G  ++LP VS   A++VW GVC+ F++ +LLEF  VNY  R
Sbjct:   291 TSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASR 333

GO:0008068 "extracellular-glutamate-gated chloride channel activity" evidence=NAS;IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00000232 avr-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 273 (101.2 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 51/104 (49%), Positives = 74/104 (71%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             YSC +V L   R+ ++Y   ++IP I+LV  S+++FWL+ +AVPARV +GVTT+L   T 
Sbjct:   240 YSCARVVLRLRREYSYYLIQLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQ 299

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
             ++G  S LP VS + A++VW GVC+ FI+ +LLE+  VNY GRK
Sbjct:   300 ASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRK 343

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IGI

GO:0031987 "locomotion involved in locomotory behavior" evidence=IGI;IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0008144 "drug binding" evidence=IGI

GO:0008068 "extracellular-glutamate-gated chloride channel activity" evidence=IDA

WB|WBGene00001591 glc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 252 (93.8 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 46/105 (43%), Positives = 68/105 (64%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             YSCL+  +   R+ +FY   ++IP  +LV  S+++FW +  A+PARV +GVTT+L     
Sbjct:   261 YSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQ 320

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
             S G  S LP VS + A++VW G CM FI+ +LLEF  VN++  K+
Sbjct:   321 SAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANKQ 365

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0031987 "locomotion involved in locomotory behavior" evidence=IGI;IMP

UNIPROTKB|E2QZJ3 GLRA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 40/104 (38%), Positives = 72/104 (69%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 300

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
             S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+
Sbjct:   301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQ 344

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1SQV0 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 9.6e-21, P = 9.6e-21
 Identities = 40/104 (38%), Positives = 72/104 (69%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   174 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 233

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
             S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+
Sbjct:   234 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQ 277

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|K7GSI6 GLRA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 246 (91.7 bits), Expect = 9.6e-21, P = 9.6e-21
 Identities = 40/104 (38%), Positives = 72/104 (69%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   174 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 233

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
             S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+
Sbjct:   234 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQ 277

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 42/130 (32%), Positives = 81/130 (62%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   153 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 212

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVT 121
             S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+     + +R      T
Sbjct:   213 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHK-ELLRFRRKRRSKT 271

Query:   122 QTFQRNTYHK 131
             + F    +++
Sbjct:   272 EAFALEKFYR 281

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 42/130 (32%), Positives = 81/130 (62%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   152 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 211

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVT 121
             S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V R+     + +R      T
Sbjct:   212 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHK-ELLRFRRKRKNKT 270

Query:   122 QTFQRNTYHK 131
             + F    +++
Sbjct:   271 EAFALEKFYR 280

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|E1BTB5 GLRA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 40/104 (38%), Positives = 72/104 (69%)

Query:     2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
             ++C++V     R   +Y   ++IP +++V  S+++FW+  +A PARV +G+TT+L   T 
Sbjct:   241 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ 300

Query:    62 SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRK 105
             S+G R++LP VS + A+++W  VC+ F++A+LLE+  VN+V R+
Sbjct:   301 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQ 344

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	7e-26
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	3e-05

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  100 bits (250), Expect = 7e-26
 Identities = 44/107 (41%), Positives = 66/107 (61%)

Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           Y CL    +  R   +Y   ++IP I++V  S+++FWL  +A  ARV +G+TT+L   T 
Sbjct: 227 YPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTF 286

Query: 62  SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPL 108
           S+G R +LP VS + A++V+  VCM F++ +LLE   VNYV  K P 
Sbjct: 287 SSGVRESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPA 333

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 24  IPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDG 83
           IP +++   S++ FWL  +A P +V +G+TT+L         R +LP  S +  +     
Sbjct: 3   IPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGKYL 62

Query: 84  VCMCFIYASLLEF-VCV-NYVGRKRPLH 109
           V   F++ + +E+ V V N   R    H
Sbjct: 63  VFTMFVFTASVEYAVVVLNVHHRSPSTH 90

This family includes the four transmembrane helices that form the ion channel. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG3643|consensus	459		100.0
KOG3644|consensus	457		100.0
KOG3642|consensus	466		99.96
TIGR00860	459	LIC Cation transporter family protein. selective w	99.93
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.88
KOG3646|consensus	486		99.77
KOG3645|consensus	449		99.73

>KOG3643|consensus

Probab=100.00  E-value=7.5e-36  Score=245.80  Aligned_cols=106  Identities=39%  Similarity=0.770  Sum_probs=104.1

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      ||+.+.+.|.++|+.|||++|+|+|++++|++||+||||+.|+++||+++|+|++|||++...+.+++||++||+|+||+
T Consensus       228 ~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDi  307 (459)
T KOG3643|consen  228 NYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDV  307 (459)
T ss_pred             cceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKR  106 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~  106 (133)
                      |+.+|++|||+|++|||+|||...++
T Consensus       308 YL~vCFvfVF~sLLEYA~V~Y~~~~~  333 (459)
T KOG3643|consen  308 YLGVCFVFVFLSLLEYAAVNYMFKRR  333 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999988866

>KOG3644|consensus

Probab=100.00  E-value=7.7e-34  Score=238.15  Aligned_cols=105  Identities=50%  Similarity=0.972  Sum_probs=103.2

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      +|+|++++++++|+.|||++|.|+|+.++|++||+|||++++|++||++||+|+||++++....+...||++||+++||+
T Consensus       237 ~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDV  316 (457)
T KOG3644|consen  237 VYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDV  316 (457)
T ss_pred             ceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRK  105 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~  105 (133)
                      |+++|++|+|+|++|+++|+|+.++
T Consensus       317 Wm~~C~~FIF~sLlE~A~V~~~~~~  341 (457)
T KOG3644|consen  317 WMGVCMTFIFGSLLELAVVNYVGRR  341 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999886

>KOG3642|consensus

Probab=99.96  E-value=8.4e-31  Score=216.85  Aligned_cols=105  Identities=36%  Similarity=0.728  Sum_probs=102.6

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      ||+.+++.|+++|+.|||++|+|+||+++|++||++||+++|+++||.++|||++|||++.....+.++|++||.|++|+
T Consensus       236 ey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~  315 (466)
T KOG3642|consen  236 EYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDV  315 (466)
T ss_pred             CEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRK  105 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~  105 (133)
                      |.++|++|+|+|++|+++|||+...
T Consensus       316 fIavCf~FvFsaliEfa~vNYft~~  340 (466)
T KOG3642|consen  316 FIAVCFIFVFAALVEFAVVNYFTLN  340 (466)
T ss_pred             HHHHHHHHHHHHHHHHHheeeeeec
Confidence            9999999999999999999999843

>TIGR00860 LIC Cation transporter family protein

Probab=99.93  E-value=7.2e-27  Score=196.41  Aligned_cols=107  Identities=41%  Similarity=0.812  Sum_probs=102.3

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      +|++++++++++|+++||++++++||++++++||++||+|+++.++|+++|+|++|++++++..+++.+|++||+|+||+
T Consensus       226 ~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli~~  305 (459)
T TIGR00860       226 EYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDV  305 (459)
T ss_pred             CcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHHHH
Confidence            48999999999999999999999999999999999999999977999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKRP  107 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~~  107 (133)
                      |+++|++++++|++|+++|+++.++.+
T Consensus       306 y~~~~~~~v~~sli~tv~V~~~~~~~~  332 (459)
T TIGR00860       306 YFAVCMAFVFLALLETAFVNYVHHKDP  332 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhheeEEccCC
Confidence            999999999999999999987776643

selective while glycine receptors are anion selective).

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.88  E-value=4.9e-25  Score=160.20  Aligned_cols=83  Identities=31%  Similarity=0.576  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6972          22 VFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNY  101 (133)
Q Consensus        22 ~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~~v~~alle~~~V~~  101 (133)
                      +|+||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++||.+.+|.|+.+|+++++.+++|+++|++
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~   80 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence            58999999999999999999996699999999999999999999999999999999999999999999999999999987


Q ss_pred             hcc
Q psy6972         102 VGR  104 (133)
Q Consensus       102 ~~~  104 (133)
                      ..+
T Consensus        81 ~~~   83 (237)
T PF02932_consen   81 NIH   83 (237)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            663

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>KOG3646|consensus

Probab=99.77  E-value=2.4e-19  Score=149.08  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=99.5

Q ss_pred             cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhH
Q psy6972           2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNV   80 (133)
Q Consensus         2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~   80 (133)
                      |++++|.++++||..||.+|+++||+++.+++..+|-+|||+ |||+++++|.+|+.++|...++++.|++| .+|++++
T Consensus       222 Y~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~  300 (486)
T KOG3646|consen  222 YPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGA  300 (486)
T ss_pred             cceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHH
Confidence            889999999999999999999999999999999999999999 99999999999999999999999999999 7999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-hhhcccC
Q psy6972          81 WDGVCMCFIYASLLEFVCV-NYVGRKR  106 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V-~~~~~~~  106 (133)
                      ||..|+..+.+|++-+++| |++.|.-
T Consensus       301 fFsc~m~iv~~SvvfTv~vLn~h~R~p  327 (486)
T KOG3646|consen  301 FFSCCMFIVAASVVFTVIVLNLHHRTP  327 (486)
T ss_pred             HHHHHHHHHHhhheeEEEEEeeeccCc
Confidence            9999999999999988887 8877753

>KOG3645|consensus

Probab=99.73  E-value=2.4e-18  Score=144.61  Aligned_cols=106  Identities=18%  Similarity=0.326  Sum_probs=99.6

Q ss_pred             cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhhH
Q psy6972           2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMNV   80 (133)
Q Consensus         2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id~   80 (133)
                      |+.+.+.+++||+|.||.+++++||+++.+++.++||+|++.-.+|+++|++++|+++++...+++.+|++|. +|.+++
T Consensus       226 ~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~  305 (449)
T KOG3645|consen  226 YSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGK  305 (449)
T ss_pred             eeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHH
Confidence            8899999999999999999999999999999999999998885699999999999999999999999999995 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKRP  107 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~~  107 (133)
                      |+.++++++.++++.++++..+.++.+
T Consensus       306 y~~~~m~~~~~sv~~tv~i~~~~~~~~  332 (449)
T KOG3645|consen  306 YLLFTMVLVTISVVVTVVILNLHHRSP  332 (449)
T ss_pred             HHHHHHHHHHHHHHHheeEEeeecccC
Confidence            999999999999999999976666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		1e-21
1vry_A	76	Second And Third Transmembrane Domains Of The Alpha		2e-14

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 66/102 (64%)
Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           YSCL+  +   R+ +FY   ++IP  +LV  S+++FW +  A+PARV +GVTT+L     
Sbjct: 200 YSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQ 259
Query: 62  SNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVG 103
           S G  S LP VS + A++VW G CM FI+ +LLEF  VN++ 
Sbjct: 260 SAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIA 301

>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor Length = 76

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 51/69 (73%)
Query: 44  VPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVG 103
           +PARV +G+TT+L   T S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V 
Sbjct: 1   LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60
Query: 104 RKRPLHNVV 112
           RK+  H ++
Sbjct: 61  RKKKKHRLL 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	7e-32
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	4e-31
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	5e-24
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	3e-20
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	3e-05
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	9e-05
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	1e-04

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  113 bits (286), Expect = 7e-32
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            +S + V +   R+ ++Y  +  +P  +++ +S+  FWLE  +   R+    T ML    
Sbjct: 187 EFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVA 244

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 107
            +    + LP +   T ++         I+A++L  +  ++      
Sbjct: 245 YAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGV 291

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  112 bits (282), Expect = 4e-31
 Identities = 45/110 (40%), Positives = 66/110 (60%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
            YSCL+  +   R+ +FY   ++IP  +LV  S+++FW +  A+PARV +GVTT+L    
Sbjct: 199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTA 258

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHN 110
            S G  S LP VS + A++VW G CM FI+ +LLEF  VN++        
Sbjct: 259 QSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEW 308

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 93.1 bits (232), Expect = 5e-24
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 1   NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFT 60
             S L   L  +R    Y   + +P + ++  S+  FW    +  A V + V+T++    
Sbjct: 184 LESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIA 241

Query: 61  TSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKR 106
            +    + LP    +T       +   F + +++E    +Y+  + 
Sbjct: 242 FNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVES 287

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 77.6 bits (191), Expect = 3e-20
 Identities = 30/69 (43%), Positives = 51/69 (73%)

Query: 44  VPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVG 103
           +PARV +G+TT+L   T S+G R++LP VS + A+++W  VC+ F++++LLE+  VN+V 
Sbjct: 1   LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60

Query: 104 RKRPLHNVV 112
           RK+  H ++
Sbjct: 61  RKKKKHRLL 69

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           +  +   LI  R   FY   +  P +++ +   + ++L   A   +  + ++ +L     
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257

Query: 62  SNGFRSTLPVVSNLTA-MNVWDGVCMCFIYASLLEFVCV-NYVGRKRPLHNVVY 113
                  +P  S     +  +    M      +   V V N   R    H+ V 
Sbjct: 258 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSCVE 311

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           +  +   LI  R   FY   +  P +++ +   + ++L   A   +  + ++ +L     
Sbjct: 205 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 264

Query: 62  SNGFRSTLPVVSNLT-AMNVWDGVCMCFIYASLLEFVCV-NYVGRKRPLHNV 111
                  +P  S     +  +    M      +   V V N   R    H++
Sbjct: 265 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSL 316

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 2   YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTT 61
           Y  +    I  R   ++   V IP ++    + + F+L  ++   ++ + ++ +L+    
Sbjct: 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVF 256

Query: 62  SNGFRSTLPVVSNLT-AMNVWDGVCMCFIYASLLEFVCV-NYVGRKRPLHNVVY 113
                  +P  S+    +  +    M F+ +S++  V V N   R    H+ + 
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHSAIE 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.96
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.96
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.95
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.94
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.94
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.94
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.94
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.94
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.93
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.93
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.93
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.93
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.93
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.92
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.86
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.85
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.85
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.84
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	99.81
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	96.78

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.96  E-value=6.8e-31  Score=193.75  Aligned_cols=107  Identities=17%  Similarity=0.292  Sum_probs=91.3

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id   79 (133)
                      +|+++++++++||+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|++|
T Consensus        14 ~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPlI~   92 (164)
T 2ksr_A           14 GTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVG   92 (164)
T ss_dssp             -----------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHHHH
T ss_pred             CcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCHHH
Confidence            4899999999999999999999999999999999999999998 99999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRKRPL  108 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~~~~  108 (133)
                      +|+.+|++++++|++|+++|..+.+|.+.
T Consensus        93 ~y~~~~m~~v~~sll~tv~Vl~~~~r~~~  121 (164)
T 2ksr_A           93 KYLMFTMVLVTFSIVTSVCVLNVHHRSPT  121 (164)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence            99999999999999999999666655544

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.96  E-value=1.9e-30  Score=209.05  Aligned_cols=107  Identities=42%  Similarity=0.850  Sum_probs=103.5

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      +|+++.+.++++|+++||++++++||++++++||++||+|+|+.+||+++|+|++|++++++..+++.+|++||+|+||+
T Consensus       199 ~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~  278 (347)
T 3rhw_A          199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDV  278 (347)
T ss_dssp             EECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHH
T ss_pred             ceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHH
Confidence            38999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKRP  107 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~~  107 (133)
                      |+++|++|+++|++|+++|+++.++.+
T Consensus       279 ~~~~~~~~v~~slle~~~v~~l~~~~~  305 (347)
T 3rhw_A          279 WIGACMTFIFCALLEFALVNHIANAGT  305 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            999999999999999999999888764

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.95  E-value=4.1e-31  Score=190.46  Aligned_cols=101  Identities=11%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             cceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhH
Q psy6972           2 YSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNV   80 (133)
Q Consensus         2 ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~   80 (133)
                      |+++++.+++||+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+
T Consensus        36 y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPlI~~  114 (140)
T 2lkg_A           36 LIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGK  114 (140)
T ss_dssp             HHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHHHHH
T ss_pred             EEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccHHHH
Confidence            678889999999999999999999999999999999999997 99999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-hhhc
Q psy6972          81 WDGVCMCFIYASLLEFVCV-NYVG  103 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V-~~~~  103 (133)
                      |+..|++++++|++|+++| |+..
T Consensus       115 y~~~~~~~v~~sll~tv~Vln~~~  138 (140)
T 2lkg_A          115 YMLFTKEFVESSIKITEEVINTHH  138 (140)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhheeeec
Confidence            9999999999999999988 5543

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.94  E-value=9e-29  Score=177.62  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             EEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHH
Q psy6972          10 IFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCF   88 (133)
Q Consensus        10 ~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~   88 (133)
                      ++||+++||+.|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|++|+|+..|+++
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~   80 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF   80 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998 99999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccCcc
Q psy6972          89 IYASLLEFVCVNYVGRKRPL  108 (133)
Q Consensus        89 v~~alle~~~V~~~~~~~~~  108 (133)
                      +++|++|+++|..+.+|.+.
T Consensus        81 v~~sl~~tv~V~~~~~r~~~  100 (137)
T 2lly_A           81 VTLSIVITVFVLNVHHRSPE  100 (137)
T ss_dssp             HHHHHHHHHHHHHCCSSCSS
T ss_pred             HHHHhhhhhhhhhHHhcCCc
Confidence            99999999999666555543

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.94  E-value=5.8e-29  Score=202.27  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++++++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       197 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~  276 (370)
T 2bg9_E          197 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG  276 (370)
T ss_dssp             CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             CCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHH
Confidence            48999999999999999999999999999999999999999988999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRKR  106 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~~  106 (133)
                      +|+.+|++++++|++|+++|..+..|.
T Consensus       277 ~~~~~~~~~v~~sll~~v~v~~~~~r~  303 (370)
T 2bg9_E          277 KYLIFVMFVSLVIVTNCVIVLNVSLRT  303 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHhhheeeeccC
Confidence            999999999999999999996555444

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.94  E-value=2.9e-28  Score=194.32  Aligned_cols=106  Identities=18%  Similarity=0.273  Sum_probs=100.3

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      +|+++.+++++||+++||++++++||++++++||++|| |++ .+||+++|+|++|++++++..+++.+|++||+|+||+
T Consensus       184 ~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~-~~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~  261 (321)
T 3tlw_A          184 LESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STS-YEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGA  261 (321)
T ss_dssp             EEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHH
T ss_pred             ceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCC-CCCcEEEEhhHHHHHHHHHHHHHhhCCCccccHHHHH
Confidence            48999999999999999999999999999999999999 554 4999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKRPL  108 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~~~  108 (133)
                      |+.+|++++++|++|+++|+++.++.+.
T Consensus       262 ~~~~~~~~v~~sll~~v~v~~l~~~~~~  289 (321)
T 3tlw_A          262 IIFMIYLFYFVAVIEVTVQHYLKVESQP  289 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcCCcc
Confidence            9999999999999999999988876643

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.94  E-value=9e-29  Score=201.17  Aligned_cols=106  Identities=16%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++++++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       197 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~  275 (370)
T 2bg9_A          197 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIG  275 (370)
T ss_dssp             CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred             CeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHH
Confidence            3899999999999999999999999999999999999999998 899999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccCc
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRKRP  107 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~~~  107 (133)
                      +|+.+|++|+++|++|+++|..+.+|.+
T Consensus       276 ~~~~~~~~~v~~sl~~~~~v~~~~~r~~  303 (370)
T 2bg9_A          276 KYMLFTMIFVISSIIVTVVVINTHHRSP  303 (370)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence            9999999999999999999965555443

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.94  E-value=3.3e-28  Score=194.04  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=101.1

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccccchhhH
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV   80 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~   80 (133)
                      +|+++.+++++||+++||++++++||++++++||++||+| ++ +||+++|+|++|+++++...+++.+|++||+|+||+
T Consensus       187 ~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~-~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~  264 (322)
T 3rqw_A          187 EFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SF-SERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQ  264 (322)
T ss_dssp             EEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SH-HHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHH
T ss_pred             CeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CC-CCcEEEEEehHHHHHHHHHHHhhhCCCccchHHHHH
Confidence            3889999999999999999999999999999999999999 54 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972          81 WDGVCMCFIYASLLEFVCVNYVGRKRPL  108 (133)
Q Consensus        81 ~~~~c~~~v~~alle~~~V~~~~~~~~~  108 (133)
                      |+.+|++++++|++|+++|+++.++.+.
T Consensus       265 ~~~~~~~~v~~sll~~~~v~~l~~~~~~  292 (322)
T 3rqw_A          265 MIIAGYGSIFAAILLIIFAHHRQANGVE  292 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            9999999999999999999988876654

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.93  E-value=3e-28  Score=198.13  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=97.6

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++++++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       196 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~  274 (369)
T 2bg9_C          196 NYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIG  274 (369)
T ss_dssp             CCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred             CccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHH
Confidence            489999999999999999999999999999999999999999 5999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hhhcc
Q psy6972          80 VWDGVCMCFIYASLLEFVCV-NYVGR  104 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V-~~~~~  104 (133)
                      +|+.+|++++++|++|+++| |++.|
T Consensus       275 ~~~~~~~~~v~~sll~~v~v~~~~~r  300 (369)
T 2bg9_C          275 KYLMFIMSLVTGVVVNCGIVLNFHFR  300 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhheeeeecc
Confidence            99999999999999999887 55443

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.93  E-value=5.7e-28  Score=196.56  Aligned_cols=103  Identities=18%  Similarity=0.288  Sum_probs=97.7

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++++++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       194 ~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~  272 (370)
T 2bg9_B          194 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSVPIII  272 (370)
T ss_dssp             SBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCS
T ss_pred             CccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHH
Confidence            489999999999999999999999999999999999999999 5999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hhhcc
Q psy6972          80 VWDGVCMCFIYASLLEFVCV-NYVGR  104 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V-~~~~~  104 (133)
                      +|+.+|++++++|++|+++| |++.|
T Consensus       273 ~~~~~~~~~v~~sll~~v~v~~~~~r  298 (370)
T 2bg9_B          273 SYLMFIMILVAFSVILSVVVLNLHHR  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            99999999999999999887 55443

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.93  E-value=1.2e-27  Score=201.07  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++|+++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       204 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~  283 (488)
T 4aq5_E          204 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG  283 (488)
T ss_dssp             CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             CcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHH
Confidence            48999999999999999999999999999999999999999977999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccC
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRKR  106 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~~  106 (133)
                      +|+++|++++++|++|+++|..+..|.
T Consensus       284 ~y~~~~m~lv~~Sll~tv~Vlnl~~r~  310 (488)
T 4aq5_E          284 KYLIFVMFVSLVIVTNCVIVLNVSLRT  310 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHhhEEEEEccC
Confidence            999999999999999999996665543

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.93  E-value=1.8e-27  Score=198.91  Aligned_cols=104  Identities=15%  Similarity=0.297  Sum_probs=99.3

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id   79 (133)
                      +|++++++++++|+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| |+|+||
T Consensus       221 ~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~  299 (461)
T 4aq5_A          221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIG  299 (461)
T ss_dssp             CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred             CcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHH
Confidence            4899999999999999999999999999999999999999999 59999999999999999999999999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRK  105 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~  105 (133)
                      +|+.+|++++++|++|+++|.++.+|
T Consensus       300 ~y~~~~m~~v~~sll~tv~Vl~l~~r  325 (461)
T 4aq5_A          300 KYMLFTMIFVISSIIVTVVVINTHHR  325 (461)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhhheeeecc
Confidence            99999999999999999999665544

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.93  E-value=3e-27  Score=198.92  Aligned_cols=104  Identities=17%  Similarity=0.274  Sum_probs=99.3

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       227 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~  305 (493)
T 4aq5_B          227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIII  305 (493)
T ss_dssp             SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCC
T ss_pred             CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchH
Confidence            4899999999999999999999999999999999999999997 999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRK  105 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~  105 (133)
                      +|+.+|++++++|++|+++|.++..|
T Consensus       306 ~y~~~~m~~v~lsll~tv~Vl~l~~r  331 (493)
T 4aq5_B          306 SYLMFIMILVAFSVILSVVVLNLHHR  331 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHhheeeecc
Confidence            99999999999999999999665544

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.92  E-value=7.8e-27  Score=197.61  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=99.2

Q ss_pred             CcceEEEEEEEEecccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCccc-cchhh
Q psy6972           1 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSN-LTAMN   79 (133)
Q Consensus         1 ~ys~l~~~~~l~R~~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy-~~~id   79 (133)
                      +|++++++++++|+++||++|+++||++++++||++||+|+| .+||+++|+|++|+++++...+++.+|++|| +|+||
T Consensus       232 ~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~  310 (522)
T 4aq5_C          232 NYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIG  310 (522)
T ss_dssp             CCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCH
T ss_pred             CcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHH
Confidence            489999999999999999999999999999999999999999 5999999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccc
Q psy6972          80 VWDGVCMCFIYASLLEFVCVNYVGRK  105 (133)
Q Consensus        80 ~~~~~c~~~v~~alle~~~V~~~~~~  105 (133)
                      +|+++|++++++|++|+++|..+..|
T Consensus       311 ~y~~~~m~lv~lSll~tviVlnl~~r  336 (522)
T 4aq5_C          311 KYLMFIMSLVTGVVVNCGIVLNFHFR  336 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHheEEEEEcc
Confidence            99999999999999999999665544

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.86  E-value=3.1e-24  Score=165.28  Aligned_cols=89  Identities=17%  Similarity=0.298  Sum_probs=85.2

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      |+||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999 99999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhhh-hhhcc
Q psy6972          94 LEFVCV-NYVGR  104 (133)
Q Consensus        94 le~~~V-~~~~~  104 (133)
                      +|+++| |++.|
T Consensus        80 ~~tv~vln~~~r   91 (227)
T 1oed_A           80 IITVVVINTHHR   91 (227)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcc
Confidence            999999 55544

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.85  E-value=7.6e-24  Score=165.15  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=85.1

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      ++||++|+++||++++++||++||+|+|+ +||+++|+|++|+++++...+++.+|++| ++|++|+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999 99999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhhh-hhhcc
Q psy6972          94 LEFVCV-NYVGR  104 (133)
Q Consensus        94 le~~~V-~~~~~  104 (133)
                      +|+++| |++.|
T Consensus        80 ~~tv~Vln~~~r   91 (250)
T 1oed_B           80 ILSVVVLNLHHR   91 (250)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHhheeeeecc
Confidence            999999 55544

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.85  E-value=9.1e-24  Score=165.53  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      ++||++|+++||++++++||++||+|+|+.+||+++|+|++|+++++...+++.+|++| |+|+||+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl   80 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999996699999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhhh-hhhcc
Q psy6972          94 LEFVCV-NYVGR  104 (133)
Q Consensus        94 le~~~V-~~~~~  104 (133)
                      +++++| |++.|
T Consensus        81 ~~tv~vln~~~r   92 (260)
T 1oed_E           81 MNCVIVLNVSLR   92 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHhheeeeecc
Confidence            999987 66554

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.84  E-value=5.9e-23  Score=160.92  Aligned_cols=89  Identities=13%  Similarity=0.209  Sum_probs=84.7

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      ++||++|+++||+++++++|++||+|+|+ +||+++|+|++|++++|...+++.+|++| ++|+||+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~   79 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999996 99999999999999999999999999999 99999999999999999999


Q ss_pred             HHHhhh-hhhcc
Q psy6972          94 LEFVCV-NYVGR  104 (133)
Q Consensus        94 le~~~V-~~~~~  104 (133)
                      +++++| |++.|
T Consensus        80 ~~tv~vl~~~~r   91 (260)
T 1oed_C           80 VNCGIVLNFHFR   91 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHheeeeecc
Confidence            999999 55543

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=99.81  E-value=6.5e-22  Score=128.58  Aligned_cols=64  Identities=45%  Similarity=0.867  Sum_probs=58.6

Q ss_pred             CCceeeeeeeeeeeeeeccccccCCCCccccchhhHHHHHHHHHHHHHHHHHhhhhhhcccCcc
Q psy6972          45 PARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPL  108 (133)
Q Consensus        45 ~~Rv~l~it~lLt~~~~~~~~~~~lP~~sy~~~id~~~~~c~~~v~~alle~~~V~~~~~~~~~  108 (133)
                      ++|+++|+|++|+++++....++++|++||++++|+|+++|++|+|+|++|+++|||+.|++++
T Consensus         2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~   65 (76)
T 1vry_A            2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKK   65 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6899999999999999999999999999999999999999999999999999999999887754

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=96.78  E-value=5.8e-05  Score=39.34  Aligned_cols=27  Identities=52%  Similarity=0.792  Sum_probs=25.4

Q ss_pred             CCceeeeeeeeeeeeeeccccccCCCC
Q psy6972          45 PARVMIGVTTMLNFFTTSNGFRSTLPV   71 (133)
Q Consensus        45 ~~Rv~l~it~lLt~~~~~~~~~~~lP~   71 (133)
                      ++|+++|++++|+++.+....+..+|+
T Consensus         2 paRv~LGittvLt~tt~~~~~~~~lPk   28 (28)
T 1mot_A            2 PARVGLGITTVLTMTTQSSGSRASLPK   28 (28)
T ss_dssp             CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred             CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence            789999999999999999999988986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	8e-14
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	5e-13
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	1e-10
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	7e-10

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 63.7 bits (154), Expect = 8e-14
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY   +  P +++ +   + ++L   A   +  + ++ +L            +P  S N+
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYVGRKRP 107
             +  +    M      ++  V V  V  + P
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTP 94

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           ++   V IP ++    + + F+L  ++   ++ + ++ +L+           +P  S  +
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQTFQRNTYHKSM 133
             +  +    M F+ +S++  V V     + P  + + +        T     +  +M
Sbjct: 62  PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTM 119

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY      P +++   + + F+L   +   ++   ++ +L            LP  +  +
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYV 102
             +  +    M  +   ++    V   
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIVLNF 88

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 52.8 bits (126), Expect = 7e-10
 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 17  FYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NL 75
           FY     IP I++   + + F+L  +A   ++ + ++ +L            +P  S ++
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 76  TAMNVWDGVCMCFIYASLLEFVCVNYV 102
             +  +    M  +  S++  V V  +
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.92
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.9
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.89
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.87

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.92  E-value=1.4e-27  Score=182.56  Aligned_cols=92  Identities=14%  Similarity=0.211  Sum_probs=87.8

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      |+||++|+++||++++++||++||+|+|+.|||+++|+|++|++++++..+++.+|++| ++|++|+|+++|++++++++
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl   80 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999899999999999999999999999999999 89999999999999999999


Q ss_pred             HHHhhhhhhcccC
Q psy6972          94 LEFVCVNYVGRKR  106 (133)
Q Consensus        94 le~~~V~~~~~~~  106 (133)
                      +++++|+++.++.
T Consensus        81 ~~t~iVl~~~~~~   93 (260)
T d1oede_          81 MNCVIVLNVSLRT   93 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHheeeEEccC
Confidence            9999997766543

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.90  E-value=1.7e-26  Score=174.06  Aligned_cols=91  Identities=14%  Similarity=0.271  Sum_probs=87.4

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      |+||++|+++||++++++||++||+|+|+ +||+++|+|++|++++++..+++.+|++| ++|++|+|+.+|++++++++
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl   79 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence            78999999999999999999999999999 99999999999999999999999999999 89999999999999999999


Q ss_pred             HHHhhhhhhcccC
Q psy6972          94 LEFVCVNYVGRKR  106 (133)
Q Consensus        94 le~~~V~~~~~~~  106 (133)
                      +++++|.++.++.
T Consensus        80 i~tiiV~~l~~~~   92 (227)
T d1oeda_          80 IITVVVINTHHRS   92 (227)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHhheeccC
Confidence            9999998876654

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.89  E-value=8.5e-26  Score=171.89  Aligned_cols=91  Identities=11%  Similarity=0.158  Sum_probs=86.8

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      |+||++|+++||++++++||++||+|+|+ |||+++|+|++|++++|+..+++.+|++| ++|++|+|+.+|++++++++
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~   79 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999998 99999999999999999999999999999 89999999999999999999


Q ss_pred             HHHhhhhhhcccC
Q psy6972          94 LEFVCVNYVGRKR  106 (133)
Q Consensus        94 le~~~V~~~~~~~  106 (133)
                      +++++|.++.++.
T Consensus        80 ~~t~~Vl~~~~~~   92 (260)
T d1oedc_          80 VNCGIVLNFHFRT   92 (260)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHhheeeeecc
Confidence            9999997765543

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.87  E-value=1.1e-24  Score=165.39  Aligned_cols=90  Identities=17%  Similarity=0.253  Sum_probs=85.4

Q ss_pred             ccchhhHHHHHHHHHHHHHhhhccccCCCCCCceeeeeeeeeeeeeeccccccCCCCcc-ccchhhHHHHHHHHHHHHHH
Q psy6972          15 RAFYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS-NLTAMNVWDGVCMCFIYASL   93 (133)
Q Consensus        15 ~~~y~~~~~lPs~livilSw~sFwi~~~~~~~Rv~l~it~lLt~~~~~~~~~~~lP~~s-y~~~id~~~~~c~~~v~~al   93 (133)
                      |+||++|+++||++++++||++||+|+|+ |||+++|+|++|++++++..+++.+|++| ++|++|+|+++|++++++++
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~   79 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999 99999999999999999999999999999 89999999999999999999


Q ss_pred             HHHhhhhhhccc
Q psy6972          94 LEFVCVNYVGRK  105 (133)
Q Consensus        94 le~~~V~~~~~~  105 (133)
                      +++++|..+..+
T Consensus        80 ~~~~~v~~~~~~   91 (250)
T d1oedb_          80 ILSVVVLNLHHR   91 (250)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHhheeeecc
Confidence            999998655443