Psyllid ID: psy6976

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS
ccccccHHHccHHHHHHHHHccccEEEEEccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHccEEEEEccccccEEEEEccccccccHHHHHHHHHccEEcccccccEEEEEEEEEEEEccEEEEEEEEcccc
cccccHHHHHHHHHHHHcccccccEEEEEcccEEEcEcccccccccccEEcccEEHHHccccccccccccEEEEEHHHHHHccccccccccEccHHHHHHHHHHHcccccEcccccccEEEEcccccccccHHHHHHHHHHHHHHcHcccccEEEEEEEEEccccEEEEEEEccccc
ghpfnraslfnvGYAEAikirefdcfifhdvdlipeddrnlytcpgmprhmsvavdsmnyrlpyaslfggvcalnKEHFQLVNgfsneywgwggedddmSNRVKAAGLqiiryppdiakYSMLRHrkekanpqrYEKLYSGhkrykkdgltslkYKVIDTKQHKLFTWFLVQLGEVS
ghpfnraslfNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMlrhrkekanpqryeklysghkrykkdglTSLKYKVIDTKQHKLFTWFLVQLGEVS
GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS
******ASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML*************KLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQL****
*HPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGE**
GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS
*HPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG***
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query177 2.2.26 [Sep-21-2011]
Q9GUM2383 Beta-1,4-N-acetylgalactos yes N/A 0.971 0.449 0.531 1e-54
A8Y1P7384 Beta-1,4-N-acetylgalactos N/A N/A 0.971 0.447 0.537 2e-54
Q80WN9369 Beta-1,4-galactosyltransf yes N/A 0.971 0.466 0.5 1e-46
Q9Z2Y2369 Beta-1,4-galactosyltransf yes N/A 0.971 0.466 0.494 1e-46
O60909372 Beta-1,4-galactosyltransf yes N/A 0.971 0.462 0.488 3e-46
P15535399 Beta-1,4-galactosyltransf no N/A 0.966 0.428 0.477 1e-45
Q80WN7344 Beta-1,4-galactosyltransf no N/A 0.926 0.476 0.502 2e-44
P15291398 Beta-1,4-galactosyltransf no N/A 0.983 0.437 0.463 4e-44
Q5EA87396 Beta-1,4-galactosyltransf no N/A 0.966 0.431 0.457 1e-43
P08037402 Beta-1,4-galactosyltransf no N/A 0.983 0.432 0.463 1e-43
>sp|Q9GUM2|BRE4_CAEEL Beta-1,4-N-acetylgalactosaminyltransferase bre-4 OS=Caenorhabditis elegans GN=bre-4 PE=1 SV=1 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 128/175 (73%), Gaps = 3/175 (1%)

Query: 4   FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
           FNR  L NVGY  A ++  + CFIFHDVDL+PEDDRNLYTCP  PRHMSVA+D  NY+LP
Sbjct: 194 FNRGKLMNVGYDVASRLYPWQCFIFHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFNYKLP 253

Query: 64  YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
           Y+++FGG+ AL K+H + +NGFSN++WGWGGEDDD++ R   AGL++ RYP  IA+Y M+
Sbjct: 254 YSAIFGGISALTKDHLKKINGFSNDFWGWGGEDDDLATRTSMAGLKVSRYPTQIARYKMI 313

Query: 124 RHRKEKANPQ---RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGE 175
           +H  E  NP    RY+ +    +R+ +DGL++LKYK+++ +   L+T  +V L E
Sbjct: 314 KHSTEATNPVNKCRYKIMGQTKRRWTRDGLSNLKYKLVNLELKPLYTRAVVDLLE 368
Catalyzes the transfer of galactose onto proteins or lipids. Required for susceptibility to pore-forming crystal toxins in conjunction with bre-1, bre-2, bre-3 and bre-5.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|A8Y1P7|BRE4_CAEBR Beta-1,4-N-acetylgalactosaminyltransferase bre-4 OS=Caenorhabditis briggsae GN=bre-4 PE=3 SV=1 Back     alignment and function description
>sp|Q80WN9|B4GT2_CRIGR Beta-1,4-galactosyltransferase 2 OS=Cricetulus griseus GN=B4GALT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2Y2|B4GT2_MOUSE Beta-1,4-galactosyltransferase 2 OS=Mus musculus GN=B4galt2 PE=2 SV=1 Back     alignment and function description
>sp|O60909|B4GT2_HUMAN Beta-1,4-galactosyltransferase 2 OS=Homo sapiens GN=B4GALT2 PE=1 SV=1 Back     alignment and function description
>sp|P15535|B4GT1_MOUSE Beta-1,4-galactosyltransferase 1 OS=Mus musculus GN=B4galt1 PE=2 SV=1 Back     alignment and function description
>sp|Q80WN7|B4GT4_CRIGR Beta-1,4-galactosyltransferase 4 OS=Cricetulus griseus GN=B4GALT4 PE=2 SV=1 Back     alignment and function description
>sp|P15291|B4GT1_HUMAN Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5 Back     alignment and function description
>sp|Q5EA87|B4GT3_BOVIN Beta-1,4-galactosyltransferase 3 OS=Bos taurus GN=B4GALT3 PE=2 SV=2 Back     alignment and function description
>sp|P08037|B4GT1_BOVIN Beta-1,4-galactosyltransferase 1 OS=Bos taurus GN=B4GALT1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
383865407 399 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.426 0.688 3e-69
332022445187 Beta-1,4-N-acetylgalactosaminyltransfera 0.960 0.909 0.694 1e-68
383865405254 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.669 0.688 2e-68
307177276 295 Beta-1,4-N-acetylgalactosaminyltransfera 0.960 0.576 0.688 4e-68
380030125 395 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.430 0.676 6e-68
328775879 395 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.430 0.676 7e-68
350401522 398 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.427 0.676 2e-67
340729171 398 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.427 0.676 2e-67
156544096 433 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.392 0.670 5e-67
193624996 354 PREDICTED: beta-1,4-N-acetylgalactosamin 0.960 0.480 0.664 7e-66
>gi|383865407|ref|XP_003708165.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 143/170 (84%)

Query: 4   FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
           FNRA L NVGY EA+K R FDCFIFHDVDL+PEDDRNLYTCP  PRHMSVAVD   YRLP
Sbjct: 224 FNRAMLMNVGYVEALKERPFDCFIFHDVDLLPEDDRNLYTCPEQPRHMSVAVDKFKYRLP 283

Query: 64  YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
           YA LFGGV A++++HF+LVNGFSN YWGWGGEDDDM+NR+KA GL I RYP ++A+Y ML
Sbjct: 284 YADLFGGVSAMSRDHFRLVNGFSNVYWGWGGEDDDMANRIKAHGLHISRYPANVARYKML 343

Query: 124 RHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQL 173
            H+KEKANP+RYE L +G KR+  DGL++L+Y+++D ++ KL+TW LV+L
Sbjct: 344 THKKEKANPKRYEYLKTGKKRFTTDGLSNLQYELVDKQKPKLYTWLLVKL 393

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332022445|gb|EGI62753.1| Beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383865405|ref|XP_003708164.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like, partial [Megachile rotundata] Back     alignment and taxonomy information
>gi|307177276|gb|EFN66454.1| Beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380030125|ref|XP_003698706.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Apis florea] Back     alignment and taxonomy information
>gi|328775879|ref|XP_394839.3| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Apis mellifera] Back     alignment and taxonomy information
>gi|350401522|ref|XP_003486181.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 1 [Bombus impatiens] gi|350401524|ref|XP_003486182.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340729171|ref|XP_003402881.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156544096|ref|XP_001605539.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|193624996|ref|XP_001949222.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 1 [Acyrthosiphon pisum] gi|328709711|ref|XP_003244049.1| PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
FB|FBgn0027538403 beta4GalNAcTA "beta4GalNAcTA" 0.977 0.429 0.624 2.3e-62
WB|WBGene00000269383 bre-4 [Caenorhabditis elegans 0.971 0.449 0.531 1.9e-51
UNIPROTKB|Q9GUM2383 bre-4 "Beta-1,4-N-acetylgalact 0.971 0.449 0.531 1.9e-51
ZFIN|ZDB-GENE-070912-258379 b4galt2 "UDP-Gal:betaGlcNAc be 0.971 0.453 0.508 7.7e-48
ZFIN|ZDB-GENE-050417-236364 b4galt1 "UDP-Gal:betaGlcNAc be 0.971 0.472 0.497 4.8e-46
ZFIN|ZDB-GENE-061013-84350 zgc:154116 "zgc:154116" [Danio 0.960 0.485 0.485 1.6e-45
UNIPROTKB|F1N8F7373 B4GALT2 "Uncharacterized prote 0.966 0.458 0.485 2.1e-45
UNIPROTKB|A6QQY5369 B4GALT2 "B4GALT2 protein" [Bos 0.966 0.463 0.497 2.1e-45
MGI|MGI:1858493369 B4galt2 "UDP-Gal:betaGlcNAc be 0.971 0.466 0.494 2.1e-45
RGD|1305358369 B4galt2 "UDP-Gal:betaGlcNAc be 0.971 0.466 0.494 2.1e-45
FB|FBgn0027538 beta4GalNAcTA "beta4GalNAcTA" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 108/173 (62%), Positives = 140/173 (80%)

Query:     1 GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNY 60
             G PFNRA++ N+GY EA+K+ ++DCFIFHDVDL+P DDRNLY CP  PRHMSVA+D++N+
Sbjct:   224 GKPFNRAAMMNIGYLEALKLYQWDCFIFHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNF 283

Query:    61 RLPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY 120
             RLPY S+FGGV A+ +EHFQ VNGFSN ++GWGGEDDDMSNR+K A L I RYP +IA+Y
Sbjct:   284 RLPYRSIFGGVSAMTREHFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARY 343

Query:   121 SMLRHRKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQL 173
              ML+H+KEKANP+RYE L +G  + ++DG+ S+KY +   KQ   FTW+L +L
Sbjct:   344 KMLKHQKEKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAEL 396
GO:0007291 "sperm individualization" evidence=IMP
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0008376 "acetylgalactosaminyltransferase activity" evidence=IDA
GO:0008344 "adult locomotory behavior" evidence=IMP
GO:0006044 "N-acetylglucosamine metabolic process" evidence=IDA
GO:0007528 "neuromuscular junction development" evidence=IMP
GO:0033842 "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IDA
GO:0009247 "glycolipid biosynthetic process" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
WB|WBGene00000269 bre-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GUM2 bre-4 "Beta-1,4-N-acetylgalactosaminyltransferase bre-4" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-258 b4galt2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-236 b4galt1 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-84 zgc:154116 "zgc:154116" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8F7 B4GALT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQY5 B4GALT2 "B4GALT2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1858493 B4galt2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305358 B4galt2 "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9GUM2BRE4_CAEEL2, ., 4, ., 1, ., -0.53140.97170.4490yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
cd00899219 cd00899, b4GalT, Beta-4-Galactosyltransferase is i 2e-88
pfam0270978 pfam02709, Glyco_transf_7C, N-terminal domain of g 5e-35
pfam13733136 pfam13733, Glyco_transf_7N, N-terminal region of g 5e-21
pfam10111278 pfam10111, Glyco_tranf_2_2, Glycosyltransferase li 4e-07
>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids Back     alignment and domain information 
 Score =  257 bits (659), Expect = 2e-88
 Identities = 96/172 (55%), Positives = 121/172 (70%), Gaps = 3/172 (1%)

Query: 3   PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 62
            FNRA L NVG+ EA+K  ++DCFIFHDVDL+PE+DRNLY C   PRH+SV +D  +Y+L
Sbjct: 47  RFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKL 106

Query: 63  PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 122
           PY + FGGV AL +E F+ VNGFSN YWGWGGEDDD+ NR+KAAGL+I R   D  +Y M
Sbjct: 107 PYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKM 166

Query: 123 LRHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLV 171
           +RH  +K    NP R+  L +  +R   DGL SLKYKV+  +   L+T  LV
Sbjct: 167 IRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSLKYKVLSIELAPLYTNILV 218

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen. Length = 219
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of galactosyltransferase Back     alignment and domain information
>gnl|CDD|222351 pfam13733, Glyco_transf_7N, N-terminal region of glycosyl transferase group 7 Back     alignment and domain information
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 177
KOG3916|consensus372 100.0
cd00899219 b4GalT Beta-4-Galactosyltransferase is involved in 100.0
KOG3917|consensus310 99.96
PF0270978 Glyco_transf_7C: N-terminal domain of galactosyltr 99.91
PF10111281 Glyco_tranf_2_2: Glycosyltransferase like family 2 99.81
KOG3588|consensus494 99.7
cd06420182 GT2_Chondriotin_Pol_N N-terminal domain of Chondro 99.54
PF13733136 Glyco_transf_7N: N-terminal region of glycosyl tra 99.52
PF05679499 CHGN: Chondroitin N-acetylgalactosaminyltransferas 99.46
cd02510299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 99.44
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 99.19
cd04184202 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot 99.04
cd02526237 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr 98.97
COG4092346 Predicted glycosyltransferase involved in capsule 98.94
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 98.93
cd04185202 GT_2_like_b Subfamily of Glycosyltransferase Famil 98.88
cd02522221 GT_2_like_a GT_2_like_a represents a glycosyltrans 98.88
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 98.87
cd04195201 GT2_AmsE_like GT2_AmsE_like is involved in exopoly 98.78
TIGR01556281 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids 98.78
cd06913219 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran 98.78
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 98.75
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 98.73
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 98.72
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 98.66
TIGR03469384 HonB hopene-associated glycosyltransferase HpnB. T 98.63
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 98.63
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 98.62
PRK14583 444 hmsR N-glycosyltransferase; Provisional 98.6
cd06433202 GT_2_WfgS_like WfgS and WfeV are involved in O-ant 98.56
PRK11204 420 N-glycosyltransferase; Provisional 98.55
COG1216305 Predicted glycosyltransferases [General function p 98.44
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 98.36
TIGR03472373 HpnI hopanoid biosynthesis associated glycosyl tra 98.31
cd00761156 Glyco_tranf_GTA_type Glycosyltransferase family A 98.3
COG1215 439 Glycosyltransferases, probably involved in cell wa 98.27
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 98.27
cd06442224 DPM1_like DPM1_like represents putative enzymes si 98.16
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 98.15
cd04191254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 98.11
TIGR03111 439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 98.09
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 98.06
PRK10018279 putative glycosyl transferase; Provisional 98.03
PRK10063248 putative glycosyl transferase; Provisional 97.93
PRK14716 504 bacteriophage N4 adsorption protein B; Provisional 97.91
KOG3736|consensus 578 97.88
cd06423180 CESA_like CESA_like is the cellulose synthase supe 97.65
PLN02726243 dolichyl-phosphate beta-D-mannosyltransferase 97.63
cd04188211 DPG_synthase DPG_synthase is involved in protein N 97.56
cd04179185 DPM_DPG-synthase_like DPM_DPG-synthase_like is a m 97.5
PF13506175 Glyco_transf_21: Glycosyl transferase family 21 97.48
cd04196214 GT_2_like_d Subfamily of Glycosyltransferase Famil 97.42
cd04187181 DPM1_like_bac Bacterial DPM1_like enzymes are rela 97.41
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 97.4
cd06438183 EpsO_like EpsO protein participates in the methano 97.37
KOG3737|consensus 603 97.35
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 97.2
PF13632193 Glyco_trans_2_3: Glycosyl transferase family group 97.15
PRK05454 691 glucosyltransferase MdoH; Provisional 97.12
KOG3738|consensus 559 96.7
PRK10073328 putative glycosyl transferase; Provisional 96.33
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 96.23
cd06436191 GlcNAc-1-P_transferase N-acetyl-glucosamine transf 96.06
PF13712217 Glyco_tranf_2_5: Glycosyltransferase like family; 95.6
PF00535169 Glycos_transf_2: Glycosyl transferase family 2; In 95.41
PF13896317 Glyco_transf_49: Glycosyl-transferase for dystrogl 93.92
PF03214 348 RGP: Reversibly glycosylated polypeptide; InterPro 93.02
cd02514334 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es 92.97
PRK13915306 putative glucosyl-3-phosphoglycerate synthase; Pro 91.86
PRK10714325 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi 91.05
cd02511229 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 90.39
PTZ00260333 dolichyl-phosphate beta-glucosyltransferase; Provi 87.67
PLN03180346 reversibly glycosylated polypeptide; Provisional 86.41
COG0463291 WcaA Glycosyltransferases involved in cell wall bi 83.67
PLN02893 734 Cellulose synthase-like protein 80.38
>KOG3916|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.9e-65  Score=428.70  Aligned_cols=175  Identities=56%  Similarity=1.062  Sum_probs=170.6

Q ss_pred             CCCcchhhhhhHHHHHHHhcCCccEEEEEeccccccCCCceeccCCCceeeeeecccccccccccccccceeeeeHHHHh
Q psy6976           1 GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQ   80 (177)
Q Consensus         1 ~~~Fnra~~lN~g~~~a~~~~~~d~iif~DvD~ip~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~Gg~~~~~~~~f~   80 (177)
                      +++||||+++|+|+.+|.+++.|||+||||||++|++|+|+|.|+++|+|+++++++++|++||..+||||++++++||.
T Consensus       194 ~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDrNlY~C~~~PRH~sva~dk~gy~LPY~~~FGGVsalt~~qf~  273 (372)
T KOG3916|consen  194 NKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDRNLYGCPEQPRHMSVALDKFGYRLPYKEYFGGVSALTKEQFR  273 (372)
T ss_pred             CCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCCCccCCCCCCcchhhhhhhccccccchhhhCchhhccHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCcccCCCCchHHHHHHHHcCCeEEecCCceeEEeeecCC--CCCCChHHHHHHHhcCceecccCCceeeEEEe
Q psy6976          81 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR--KEKANPQRYEKLYSGHKRYKKDGLTSLKYKVI  158 (177)
Q Consensus        81 ~vnGfde~f~GWG~ED~dl~~Rl~~~G~~i~r~~~~~~~~~~l~H~--~~~~n~~~~~~~~~~~~~~~~dGl~~~~y~~~  158 (177)
                      +||||+|.|||||||||||+.|+..+|++|.||+..+|||+||+|.  .+.+|+.||+++.+++.+|..||||++.|++.
T Consensus       274 kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n~~Ry~lL~~tk~r~~~DGLnsl~Y~~~  353 (372)
T KOG3916|consen  274 KINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPNPGRYKLLRNTKERQTQDGLNSLKYQLL  353 (372)
T ss_pred             HhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCChHHHHHHHhhhhhhhhccccceeeeee
Confidence            9999999999999999999999999999999999999999999994  34599999999999999999999999999999


Q ss_pred             EEEeeccEEEEEEEecC
Q psy6976         159 DTKQHKLFTWFLVQLGE  175 (177)
Q Consensus       159 ~~~~~~l~t~i~vd~~~  175 (177)
                      +++.+||||||+||+++
T Consensus       354 ~v~~~pLyt~itVDl~~  370 (372)
T KOG3916|consen  354 KVELDPLYTNITVDLGP  370 (372)
T ss_pred             eeecccceEEEEEeccc
Confidence            99999999999999986

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids Back     alignment and domain information
>KOG3917|consensus Back     alignment and domain information
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases Back     alignment and domain information
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] Back     alignment and domain information
>KOG3588|consensus Back     alignment and domain information
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase Back     alignment and domain information
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A Back     alignment and domain information
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis Back     alignment and domain information
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase Back     alignment and domain information
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis Back     alignment and domain information
>TIGR01556 rhamnosyltran L-rhamnosyltransferase Back     alignment and domain information
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>COG1216 Predicted glycosyltransferases [General function prediction only] Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>PRK10018 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK10063 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>KOG3736|consensus Back     alignment and domain information
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily Back     alignment and domain information
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase Back     alignment and domain information
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation Back     alignment and domain information
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily Back     alignment and domain information
>PF13506 Glyco_transf_21: Glycosyl transferase family 21 Back     alignment and domain information
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis Back     alignment and domain information
>KOG3737|consensus Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>KOG3738|consensus Back     alignment and domain information
>PRK10073 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine Back     alignment and domain information
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B Back     alignment and domain information
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan Back     alignment and domain information
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants [] Back     alignment and domain information
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides Back     alignment and domain information
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional Back     alignment and domain information
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional Back     alignment and domain information
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide Back     alignment and domain information
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional Back     alignment and domain information
>PLN03180 reversibly glycosylated polypeptide; Provisional Back     alignment and domain information
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
1nmm_B286 Beta-1,4-Galactosyltransferase Mutant Cys342thr Com 1e-44
1fgx_A288 Crystal Structure Of The Bovine Beta 1,4 Galactosyl 1e-44
1fr8_A288 Crystal Structure Of The Bovine Beta 1,4 Galactosyl 1e-44
1nf5_B286 Crystal Structure Of Lactose Synthase, Complex With 1e-44
1yro_B286 Crystal Structure Of Beta14,-Galactosyltransferase 3e-44
2ae7_A287 Crystal Structure Of Human M340h-Beta1,4-Galactosyl 6e-44
1tvy_A286 Beta-1,4-Galactosyltransferase Mutant Met344his (M3 9e-44
2fyd_B286 Catalytic Domain Of Bovine Beta 1, 4-Galactosyltran 2e-43
1pzy_B286 W314a-Beta1,4-Galactosyltransferase-I Complexed Wit 3e-43
1nhe_B286 Crystal Structure Of Lactose Synthase Complex With 3e-43
3lw6_A287 Crystal Structure Of Drosophila Beta1,4-Galactosylt 3e-18
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex With Alpha- Lactalbumin And Glcnac Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Query: 4   FNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLP 63
           FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + LP
Sbjct: 110 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLP 169
Query: 64  YASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSML 123
           Y   FGGV AL+K+ F  +NGF N YWGWGGEDDD+ NR+   G+ + R    I K  M+
Sbjct: 170 YVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMI 229
Query: 124 RHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGEVS 177
           RH ++K    NPQR++++    +    DGL SL Y V++ +++ L+T   V +G  S
Sbjct: 230 RHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIGTPS 286
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4 Galactosyltransferase (B4galt1) Catalytic Domain Complexed With Ump Length = 288 Back     alignment and structure
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4 Galactosyltransferase (B4galt1) Catalytic Domain Complexed With Uridine Diphosphogalactose Length = 288 Back     alignment and structure
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With Glucose Length = 286 Back     alignment and structure
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant Arg228lys In Complex With Alpha-Lactalbumin In The Presence Of Udp-Galactose And Mn Length = 286 Back     alignment and structure
>pdb|2AE7|A Chain A, Crystal Structure Of Human M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1) In Complex With Pentasaccharide Length = 287 Back     alignment and structure
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his (M344h-Gal- T1) Complex With Udp-Galactose And Manganese Length = 286 Back     alignment and structure
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase In Complex With Alpha-Lactalbumin, Glucose, Mn, And Udp-N- Acetylgalactosamine Length = 286 Back     alignment and structure
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With Alpha-Lactalbumin In The Presence Of N-Acetylglucosamine, Udp And Manganese Length = 286 Back     alignment and structure
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp Length = 286 Back     alignment and structure
>pdb|3LW6|A Chain A, Crystal Structure Of Drosophila Beta1,4-Galactosyltransferas Length = 287 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
2fy7_A287 Beta-1,4-galactosyltransferase 1; M339H mutant, AP 9e-55
3lw6_A287 FI08434P, beta-4-galactosyltransferase 7; protein- 1e-49
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 5e-05
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... Length = 287 Back     alignment and structure
 Score =  173 bits (440), Expect = 9e-55
 Identities = 80/176 (45%), Positives = 111/176 (63%), Gaps = 3/176 (1%)

Query: 2   HPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYR 61
             FNRA L NVG+ EA+K  ++ CF+F DVDLIP +D N Y C   PRH+SVA+D   + 
Sbjct: 109 TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFS 168

Query: 62  LPYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYS 121
           LPY   FGGV AL+K+ F  +NGF N YWGWGGEDDD+ NR+   G+ I R    +    
Sbjct: 169 LPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTR 228

Query: 122 MLRHRKEKA---NPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 174
            +RH ++K    NPQR++++    +    DGL SL Y+V+D +++ L+T   V +G
Sbjct: 229 HIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIG 284
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster} Length = 287 Back     alignment and structure
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
3lw6_A287 FI08434P, beta-4-galactosyltransferase 7; protein- 100.0
2fy7_A287 Beta-1,4-galactosyltransferase 1; M339H mutant, AP 100.0
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 99.34
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 99.29
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 99.23
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 99.23
2nxv_A249 ATP synthase subunits region ORF 6; majastridin, A 98.91
3bcv_A240 Putative glycosyltransferase protein; protein stru 98.89
4fix_A 657 UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 98.85
1qg8_A255 Protein (spore coat polysaccharide biosynthesis P 98.65
2z86_A625 Chondroitin synthase; GT-A, glycosyltransferase A, 98.46
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 98.25
3l7i_A 729 Teichoic acid biosynthesis protein F; GT-B fold, m 98.03
3ckj_A329 Putative uncharacterized protein; mycobacteria, un 97.59
3f1y_A387 Mannosyl-3-phosphoglycerate synthase; GT-A type gl 97.08
2c0n_A203 A197; thermophil protein, thermophilic virus, STIV 94.72
1fo8_A343 Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl 87.97
2bo4_A 397 Mannosylglycerate synthase; catalysis, glycosyltra 80.72
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=7.6e-49  Score=325.73  Aligned_cols=172  Identities=33%  Similarity=0.609  Sum_probs=157.0

Q ss_pred             CCCcchhhhhhHHHHHHHhcCCccEEEEEeccccccCCCceeccCC--CceeeeeecccccccccccccccceeeeeHHH
Q psy6976           1 GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPG--MPRHMSVAVDSMNYRLPYASLFGGVCALNKEH   78 (177)
Q Consensus         1 ~~~Fnra~~lN~g~~~a~~~~~~d~iif~DvD~ip~~~~~~~~~~~--~p~~~s~~~~~~~~~~~~~~~~Gg~~~~~~~~   78 (177)
                      +.+||||+++|+|+.+|.+  .+||+||||||+||++|.+.|.|++  +|+|+|..  ++++++||..++||++++++++
T Consensus        94 ~~~FNRa~LlNvGf~ea~~--~~d~~ifHDVDLlP~dd~n~Y~c~~~~~P~Hls~~--~~~~~~~Y~~~~GGv~a~~re~  169 (287)
T 3lw6_A           94 RFRFNRASLINVGFQFASD--VYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGP--KLHPKYHYDNFVGGILLVRREH  169 (287)
T ss_dssp             SSCCCHHHHHHHHHHHSCT--TCCEEEEECTTEEECCTTSCCCCCCTTCCEESSCT--TTCSSCCCTTCCCSEEEEEHHH
T ss_pred             CCccchhheecccHHHHhc--cCCEEEEecccccccCCCccccCCCCCCceEEeec--cccCCCCcCCccccEEeccHHH
Confidence            4689999999999999975  6799999999999999999999986  89999864  6788899999999999999999


Q ss_pred             HhhhcCCCCCcccCCCCchHHHHHHHHcCCeEEecCC-ceeEEeeecCCCCC-----CChHHHHHHHhcCceecccCCce
Q psy6976          79 FQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP-DIAKYSMLRHRKEK-----ANPQRYEKLYSGHKRYKKDGLTS  152 (177)
Q Consensus        79 f~~vnGfde~f~GWG~ED~dl~~Rl~~~G~~i~r~~~-~~~~~~~l~H~~~~-----~n~~~~~~~~~~~~~~~~dGl~~  152 (177)
                      |.+||||||.|||||+||+||..||..+|+++.|++. ++|||.|+.|.++.     .+++++.++..+++++..|||++
T Consensus       170 f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~dGLns  249 (287)
T 3lw6_A          170 FKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDN  249 (287)
T ss_dssp             HHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSSCSGGG
T ss_pred             HHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcccchhhhhhhhcEEccCCCCee
Confidence            9999999999999999999999999999999999985 79999999987654     34567888888999999999999


Q ss_pred             eeEEEeEEEee------ccEEEEEEEecCC
Q psy6976         153 LKYKVIDTKQH------KLFTWFLVQLGEV  176 (177)
Q Consensus       153 ~~y~~~~~~~~------~l~t~i~vd~~~~  176 (177)
                      +.|+++++++.      .+++||.++...+
T Consensus       250 l~Y~v~s~~~~~i~~~~~~~~nv~l~c~~~  279 (287)
T 3lw6_A          250 VKYKILKVHEMLIDQVPVTILNILLDCDVN  279 (287)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEEEEECCCTT
T ss_pred             eEEEEEEEEEEEecCCCcEEEEEEEEcCCC
Confidence            99999998877      7999999987754
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... Back     alignment and structure
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Back     alignment and structure
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* Back     alignment and structure
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Back     alignment and structure
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Back     alignment and structure
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Back     alignment and structure
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Back     alignment and structure
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus} Back     alignment and structure
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* Back     alignment and structure
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 177
d1pzta_271 c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4Ga 6e-66
d1xhba2328 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa 5e-05
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  200 bits (510), Expect = 6e-66
 Identities = 80/175 (45%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 3   PFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRL 62
            FNRA L NVG+ EA+K  +++CF+F DVDLIP +D N Y C   PRH+SVA+D   + L
Sbjct: 94  MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 153

Query: 63  PYASLFGGVCALNKEHFQLVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 122
           PY   FGGV AL+K+ F  +NGF N YWG GGEDDD+ NR+   G+ + R    I K  M
Sbjct: 154 PYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 213

Query: 123 LRH---RKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 174
           +RH   +K + NPQR++++    +    DGL SL Y V++ +++ L+T   V +G
Sbjct: 214 IRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 268
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
d1pzta_271 beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos 100.0
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 99.52
d1qg8a_255 Spore coat polysaccharide biosynthesis protein Sps 98.13
d1omza_265 Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga 94.6
d2bo4a1 381 Mannosylglycerate synthase, MGS {Rhodothermus mari 93.41
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-54  Score=354.75  Aligned_cols=177  Identities=46%  Similarity=0.856  Sum_probs=169.2

Q ss_pred             CCCcchhhhhhHHHHHHHhcCCccEEEEEeccccccCCCceeccCCCceeeeeecccccccccccccccceeeeeHHHHh
Q psy6976           1 GHPFNRASLFNVGYAEAIKIREFDCFIFHDVDLIPEDDRNLYTCPGMPRHMSVAVDSMNYRLPYASLFGGVCALNKEHFQ   80 (177)
Q Consensus         1 ~~~Fnra~~lN~g~~~a~~~~~~d~iif~DvD~ip~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~Gg~~~~~~~~f~   80 (177)
                      +.+||||+++|+|+.+|.+...++|+||||||++|+++.+.|.|...|.|++...++++++++|..++||+++++++||.
T Consensus        92 ~~~FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~~Y~~~~~p~h~~~~~~~~~~~~~y~~~~GGv~~~~k~~f~  171 (271)
T d1pzta_          92 ESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFL  171 (271)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCEEGGGTTSCSCTTCCCSEEEEEHHHHH
T ss_pred             CcchhhhhhhhHHHHHhhhccCccEEEEecCCcCcccccccccccccCcceeeeccccccccccccccceeeeecHHHHh
Confidence            46899999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCcccCCCCchHHHHHHHHcCCeEEecCCceeEEeeecCCCCC---CChHHHHHHHhcCceecccCCceeeEEE
Q psy6976          81 LVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKLYSGHKRYKKDGLTSLKYKV  157 (177)
Q Consensus        81 ~vnGfde~f~GWG~ED~dl~~Rl~~~G~~i~r~~~~~~~~~~l~H~~~~---~n~~~~~~~~~~~~~~~~dGl~~~~y~~  157 (177)
                      +||||||.|||||+||+||..|+..+|+++.|++..+++|.||.|.++.   .|+.+++++.+.++++..|||++|.|++
T Consensus       172 kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~~~~~~~y~~l~H~~d~~~~~n~~r~~~l~~~~~~~~~dGLnsl~Y~v  251 (271)
T d1pzta_         172 SINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMV  251 (271)
T ss_dssp             HTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCCTTTTEEEECCCSSCCCCCCCCCCCCCHHHHHHHTTTSSGGGCCCEE
T ss_pred             hcCCCCccccCCccccHHHHHHHHHcCCeEEccCCCccccceeeccCCcccccchHHHHHHHHHhhcccCCCCcceEEEE
Confidence            9999999999999999999999999999999999999999999998766   6777888888999999999999999999


Q ss_pred             eEEEeeccEEEEEEEecCCC
Q psy6976         158 IDTKQHKLFTWFLVQLGEVS  177 (177)
Q Consensus       158 ~~~~~~~l~t~i~vd~~~~~  177 (177)
                      ++++++|+||+|+|||++|+
T Consensus       252 ~~~~~~~lyt~i~Vdi~~p~  271 (271)
T d1pzta_         252 LEVQRYPLYTKITVDIGTPS  271 (271)
T ss_dssp             EEEEECSSCEEEEEECCSCC
T ss_pred             eEEEecCCeEEEEEEccCCC
Confidence            99999999999999999996
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Back     information, alignment and structure