Psyllid ID: psy69
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 157 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | N/A | 0.414 | 0.133 | 0.415 | 3e-06 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | N/A | 0.414 | 0.133 | 0.415 | 4e-06 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | N/A | 0.401 | 0.131 | 0.380 | 2e-05 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | N/A | 0.343 | 0.114 | 0.444 | 2e-05 | |
| Q8GXK5 | 482 | Sugar transporter ERD6-li | no | N/A | 0.426 | 0.139 | 0.358 | 3e-05 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.458 | 0.142 | 0.342 | 5e-05 | |
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.433 | 0.131 | 0.323 | 5e-05 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.401 | 0.129 | 0.333 | 0.0001 | |
| Q9M0Z9 | 478 | Sugar transporter ERD6-li | no | N/A | 0.426 | 0.140 | 0.358 | 0.0001 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | N/A | 0.369 | 0.126 | 0.396 | 0.0002 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86
V SL + +GA+ SG I E GRK +L +A+IP GWL ++FA D L +GR +
Sbjct: 89 VFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLE 148
Query: 87 GVAIG 91
G +G
Sbjct: 149 GFGVG 153
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86
V SL + +GA+ SG I E GRK +L +A+IP GWL ++FA D L +GR +
Sbjct: 90 VFGSLSNVGAMVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLE 149
Query: 87 GVAIG 91
G +G
Sbjct: 150 GFGVG 154
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASL + +GAL SG + + GR+ T+ V+ + GW +AFA DV+ L GR +G+
Sbjct: 78 ASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGI 137
Query: 89 AIG 91
+G
Sbjct: 138 GLG 140
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
+GA+ SG + ++ GRK T+ A I FGW+ +A A D + L IGR TG A+G
Sbjct: 84 IGAIFSGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVG 137
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXK5|EDL14_ARATH Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana GN=At4g04750 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97
LGAL+ G + ++ GR T+ + +I GWL +AFA DV L +GR + G+++G S
Sbjct: 88 LGALICGKLADLVGRVYTIWITNILVLIGWLAIAFAKDVRLLDLGRLLQGISVGISSYLG 147
Query: 98 QLFMTAL 104
++++ L
Sbjct: 148 PIYISEL 154
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQ 78
I K+++ +V L ++ +G ++ G ++E GRK T+ ++PF GW+L+A A +V+
Sbjct: 85 ITKEEITWVGG-LMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVM 143
Query: 79 LCIGRFITGVAIG 91
+ GR I GV +G
Sbjct: 144 VFAGRVICGVCVG 156
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97
+G +L G ++E GRK T+ + PF WLL+A A V + +GR ++G ++G + L+
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 171
Query: 98 QLFMTALV 105
+++ V
Sbjct: 172 PVYLGETV 179
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 39 GALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98
G + G ++E GR+TT+ ++PF LL+A A +V+ + GRF+TG +G + L+
Sbjct: 85 GGITGGPLIEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLP 144
Query: 99 LFM 101
+++
Sbjct: 145 VYL 147
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|Q9M0Z9|EDL15_ARATH Sugar transporter ERD6-like 15 OS=Arabidopsis thaliana GN=At4g04760 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97
LGAL+ G + ++ GR T+ + +I F GW +AFA V L +GR + G++IG S
Sbjct: 83 LGALICGKLTDLVGRVKTIWITNILFVIGWFAIAFAKGVWLLDLGRLLQGISIGISVYLG 142
Query: 98 QLFMTAL 104
+++T +
Sbjct: 143 PVYITEI 149
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 34 ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
+ +GAL SG + + GR+ TL + FGWL +AFA +VL L +GR G+ +G
Sbjct: 69 LGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVG 126
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 157 | ||||||
| 328701837 | 496 | PREDICTED: facilitated trehalose transpo | 0.420 | 0.133 | 0.621 | 2e-16 | |
| 91084359 | 484 | PREDICTED: similar to AGAP007667-PA [Tri | 0.407 | 0.132 | 0.492 | 2e-12 | |
| 270008828 | 522 | hypothetical protein TcasGA2_TC015433 [T | 0.414 | 0.124 | 0.492 | 3e-12 | |
| 357611704 | 583 | hypothetical protein KGM_13558 [Danaus p | 0.426 | 0.114 | 0.507 | 5e-11 | |
| 242017426 | 515 | conserved hypothetical protein [Pediculu | 0.439 | 0.133 | 0.521 | 8e-11 | |
| 383854850 | 532 | PREDICTED: facilitated trehalose transpo | 0.382 | 0.112 | 0.523 | 9e-10 | |
| 380021871 | 559 | PREDICTED: facilitated trehalose transpo | 0.643 | 0.180 | 0.339 | 1e-09 | |
| 340724199 | 537 | PREDICTED: facilitated trehalose transpo | 0.382 | 0.111 | 0.476 | 2e-09 | |
| 322794505 | 513 | hypothetical protein SINV_10456 [Solenop | 0.382 | 0.116 | 0.476 | 2e-09 | |
| 307202951 | 521 | Solute carrier family 2, facilitated glu | 0.382 | 0.115 | 0.492 | 2e-09 |
| >gi|328701837|ref|XP_001944504.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGVISNPLGAL+SG M++ GRKTT+Q+ SIPF GW+++ + D+ LC+GRFI+GV
Sbjct: 65 ASLGVISNPLGALMSGVFMQILGRKTTVQLTSIPFLIGWIIIGLSTDITLLCLGRFISGV 124
Query: 89 AIGKSE 94
AIG S
Sbjct: 125 AIGMSS 130
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91084359|ref|XP_973264.1| PREDICTED: similar to AGAP007667-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 50/65 (76%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLG ++NP+G++LSG + E +GRK ++Q++S+PF GWL +A AD++ L +GR +TG+
Sbjct: 64 ASLGAVTNPIGSILSGLLAEYFGRKRSIQISSVPFLAGWLCIALADNITWLYVGRLVTGI 123
Query: 89 AIGKS 93
A G S
Sbjct: 124 AAGMS 128
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270008828|gb|EFA05276.1| hypothetical protein TcasGA2_TC015433 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 50/65 (76%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLG ++NP+G++LSG + E +GRK ++Q++S+PF GWL +A AD++ L +GR +TG+
Sbjct: 102 ASLGAVTNPIGSILSGLLAEYFGRKRSIQISSVPFLAGWLCIALADNITWLYVGRLVTGI 161
Query: 89 AIGKS 93
A G S
Sbjct: 162 AAGMS 166
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357611704|gb|EHJ67616.1| hypothetical protein KGM_13558 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGVISNP+GALL G +++ GR+ LQ +P GWL++A +D + LC+GRFITG
Sbjct: 143 ASLGVISNPIGALLGGMMVDAVGRRLLLQSIVLPNLIGWLVIALSDTYVFLCVGRFITGF 202
Query: 89 AIGKSELNH 97
IG S ++
Sbjct: 203 TIGMSTASY 211
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242017426|ref|XP_002429189.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514078|gb|EEB16451.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGVIS P GALLSG +M+V GRK+T+ V S+PF GWL +A A V L GR ++ +
Sbjct: 74 ASLGVISTPFGALLSGFLMDVLGRKSTIIVVSVPFLIGWLTIALATKVSLLYAGRTVSAL 133
Query: 89 AIGKSELNH 97
A G + +N+
Sbjct: 134 ASGMTAVNY 142
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854850|ref|XP_003702933.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGVISNPLGA+++G E +GR++ + +AS+P GWLL+A + +V L IGRFI G+
Sbjct: 62 ASLGVISNPLGAVIAGLCAEWFGRRSAIALASLPHAAGWLLIALSKNVPMLYIGRFIGGI 121
Query: 89 AIG 91
+G
Sbjct: 122 GMG 124
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021871|ref|XP_003694780.1| PREDICTED: facilitated trehalose transporter Tret1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 68/112 (60%), Gaps = 11/112 (9%)
Query: 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA 73
L+ ++ ++Q ++AA LGVISNPLG+L+SG E +GR++ + +A+ P+ GWLL+A +
Sbjct: 69 LEGELVDQEQASWIAA-LGVISNPLGSLISGLCAEWFGRRSAIALATFPYATGWLLIALS 127
Query: 74 DDVLQ-LCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMC 124
+ + L +GRF+ G+ IG MT + + ++ +A + +G C
Sbjct: 128 NRAVSMLYVGRFVNGIGIG---------MTNGIYLYVSETAAPNQRAWLGSC 170
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724199|ref|XP_003400471.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 48/63 (76%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
A+LGVISNPLG+L++G E +GR++ + +AS+P GWLL+A A ++ L +GRF++G+
Sbjct: 62 AALGVISNPLGSLIAGLCAEWFGRRSAIALASLPHVAGWLLIALAKNLPLLYVGRFVSGI 121
Query: 89 AIG 91
+G
Sbjct: 122 GMG 124
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322794505|gb|EFZ17558.1| hypothetical protein SINV_10456 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGV+SNPLGAL++G E +GR++ + +A++P GWLL+A + +V L GRF++G+
Sbjct: 43 ASLGVVSNPLGALVAGICAECFGRRSAITLATLPHAVGWLLIALSRNVPMLYTGRFVSGI 102
Query: 89 AIG 91
G
Sbjct: 103 GTG 105
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307202951|gb|EFN82171.1| Solute carrier family 2, facilitated glucose transporter member 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASLGV+SNPLGAL++G E +GR++ + +A++P GWLL+A + +V L GRFI+G+
Sbjct: 62 ASLGVVSNPLGALVAGLCAECFGRRSAIALATLPHAAGWLLIALSKNVPMLYAGRFISGI 121
Query: 89 AIG 91
G
Sbjct: 122 GTG 124
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 157 | ||||||
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.617 | 0.198 | 0.313 | 1.9e-07 | |
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.414 | 0.133 | 0.415 | 2.4e-07 | |
| TAIR|locus:2138927 | 482 | AT4G04750 [Arabidopsis thalian | 0.573 | 0.186 | 0.304 | 5e-07 | |
| ZFIN|ZDB-GENE-030829-25 | 498 | slc2a8 "solute carrier family | 0.592 | 0.186 | 0.359 | 6.8e-07 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.458 | 0.142 | 0.342 | 8.9e-07 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.401 | 0.131 | 0.380 | 1.3e-06 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.407 | 0.123 | 0.328 | 1.5e-06 | |
| ASPGD|ASPL0000044073 | 536 | AN2466 [Emericella nidulans (t | 0.343 | 0.100 | 0.388 | 1.6e-06 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.458 | 0.143 | 0.305 | 1.8e-06 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.401 | 0.125 | 0.317 | 2.4e-06 |
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86
V SL + +GA+ SG I E GRK +L +A+IP GWL ++FA D L +GR +
Sbjct: 90 VFGSLSNVGAMVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLE 149
Query: 87 GVAIGKSELNHQLFMTALVVILMASL--SAHSVNMSIGM 123
G +G +++ + M S + ++++IG+
Sbjct: 150 GFGVGIISYTVPVYIAEIAPQTMRGALGSVNQLSVTIGI 188
|
|
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86
V SL + +GA+ SG I E GRK +L +A+IP GWL ++FA D L +GR +
Sbjct: 89 VFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLE 148
Query: 87 GVAIG 91
G +G
Sbjct: 149 GFGVG 153
|
|
| TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97
LGAL+ G + ++ GR T+ + +I GWL +AFA DV L +GR + G+++G S
Sbjct: 88 LGALICGKLADLVGRVYTIWITNILVLIGWLAIAFAKDVRLLDLGRLLQGISVGISSYLG 147
Query: 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129
++++ L + ++ + + +G+ G SA
Sbjct: 148 PIYISELAPRNLRGAASSLMQLFVGV--GLSA 177
|
|
| ZFIN|ZDB-GENE-030829-25 slc2a8 "solute carrier family 2 (facilitated glucose transporter), member 8" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 30 SLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89
S+ I LG LL G I+E GRK +L +IPF FG+ + A + +GR +TG+A
Sbjct: 84 SVVTIGAALGGLLGGWIVERIGRKLSLMFCAIPFIFGFTTIIAAQNHWMFYVGRVLTGLA 143
Query: 90 IGKSELNHQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVL 131
G +T+LVV L S AH V ++G C V+
Sbjct: 144 SG---------VTSLVVPLYISEMAHERVRGTLGSCVQLMVVI 177
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQ 78
I K+++ +V L ++ +G ++ G ++E GRK T+ ++PF GW+L+A A +V+
Sbjct: 85 ITKEEITWVGG-LMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAINVVM 143
Query: 79 LCIGRFITGVAIG 91
+ GR I GV +G
Sbjct: 144 VFAGRVICGVCVG 156
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88
ASL + +GAL SG + + GR+ T+ V+ + GW +AFA DV+ L GR +G+
Sbjct: 78 ASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGI 137
Query: 89 AIG 91
+G
Sbjct: 138 GLG 140
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97
+G +L G ++E GRK T+ + PF WLL+A A V + +GR ++G ++G + L+
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 171
Query: 98 QLFM 101
+++
Sbjct: 172 PVYL 175
|
|
| ASPGD|ASPL0000044073 AN2466 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 21/54 (38%), Positives = 38/54 (70%)
Query: 38 LGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91
LGAL+SG + +++GRKTT+Q+ S+ + G +++ A ++ L +GR I G ++G
Sbjct: 76 LGALVSGFLSDIFGRKTTIQIGSVIWCIGSIIVCAAQNIPMLIVGRIINGFSVG 129
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 30 SLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89
S+ +S +G ++ G +E GR+ T+ ++PF GWL +A A +V + +GR I G
Sbjct: 90 SIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGFC 149
Query: 90 IGKSELNHQLFM 101
+G + L+ +++
Sbjct: 150 VGVASLSLPVYL 161
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 39 GALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98
G + G +E GRK T+ ++PF WLL+AFA+ + + GR ++G +G + L+
Sbjct: 100 GGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLP 159
Query: 99 LFM 101
+++
Sbjct: 160 VYL 162
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 157 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-05 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-04 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 37 PLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD--VLQLCIGRFITGVAIG 91
+G+L +G + + +GRK +L + ++ F G LL FA L +GR I G+ +G
Sbjct: 60 LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVG 116
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 25 LFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRF 84
LF A +G+ GAL G + + GR+ L + + F LL A A +V QL I RF
Sbjct: 57 LFSAGLIGMA---FGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113
Query: 85 ITGVAIG 91
+ G+ +G
Sbjct: 114 LAGLGLG 120
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 11 FCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM 70
D ++ +G +GAL +G + + +GRK +L + ++ F G +LM
Sbjct: 62 SANSDSYSSSLWGLVVSIFLVGGF---IGALFAGWLSDRFGRKKSLLIIALLFVIGAILM 118
Query: 71 AFADDVL---QLCIGRFITGVAIG 91
A L L +GR + G+ +G
Sbjct: 119 GLAAFALSVEMLIVGRVLLGIGVG 142
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 28 AASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITG 87
S + LG+LL+G + + +GR+ L + + F G LL+AFA + L +GRF+ G
Sbjct: 39 IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG 98
Query: 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130
+ G A ++ ++G+ +
Sbjct: 99 LGGG-------ALYPAAAALIAEWFPPKERGRALGLFSAGFGL 134
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 157 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.77 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.72 | |
| KOG0569|consensus | 485 | 99.72 | ||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.72 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.71 | |
| KOG0254|consensus | 513 | 99.69 | ||
| KOG0255|consensus | 521 | 99.69 | ||
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.68 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.67 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.66 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.66 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.66 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.65 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.65 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.64 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.64 | |
| KOG1330|consensus | 493 | 99.64 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.64 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.63 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.62 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.62 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.62 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.62 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.61 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.61 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.6 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.6 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.6 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.6 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.6 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.6 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.59 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.59 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.58 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.58 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.58 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.58 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.57 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.57 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.57 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.57 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.57 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.57 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.56 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.56 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.56 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.56 | |
| KOG2615|consensus | 451 | 99.55 | ||
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.55 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.55 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.54 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.54 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.54 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.54 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.53 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.53 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.53 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.52 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.51 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.5 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.44 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.44 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.44 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.44 | |
| KOG2532|consensus | 466 | 99.43 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.42 | |
| KOG3764|consensus | 464 | 99.42 | ||
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.41 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.36 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.35 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.32 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.3 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.3 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.29 | |
| KOG0252|consensus | 538 | 99.28 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.27 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.26 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.23 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.23 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.23 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.23 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.23 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.22 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.22 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.21 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.18 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.17 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.17 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.17 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.16 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.16 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.15 | |
| KOG0253|consensus | 528 | 99.15 | ||
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.14 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.13 | |
| KOG2533|consensus | 495 | 99.1 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.1 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.1 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.09 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.07 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.06 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.05 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.05 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.05 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.04 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.02 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.01 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.01 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.01 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.0 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.99 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.99 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.99 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.96 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.96 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.94 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.91 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.9 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.9 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.88 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.88 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.87 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.87 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.86 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.82 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.78 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.77 | |
| KOG2504|consensus | 509 | 98.77 | ||
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.74 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.72 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.72 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.71 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.7 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.69 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.68 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.68 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.68 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.68 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.67 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.66 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.64 | |
| KOG2325|consensus | 488 | 98.6 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.59 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.58 | |
| KOG2504|consensus | 509 | 98.56 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.56 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.55 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.54 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.54 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.53 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.52 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.52 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.51 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.5 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.5 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.49 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.49 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.48 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.48 | |
| KOG0253|consensus | 528 | 98.48 | ||
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.47 | |
| KOG0569|consensus | 485 | 98.46 | ||
| KOG4686|consensus | 459 | 98.44 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.43 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.38 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.37 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.37 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.37 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.36 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.34 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.28 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.28 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.25 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.25 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.23 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.19 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.19 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.15 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.12 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.12 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.12 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.08 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.07 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.04 | |
| KOG3762|consensus | 618 | 98.02 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.99 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.95 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.94 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.81 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.81 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.81 | |
| KOG2816|consensus | 463 | 97.72 | ||
| KOG4686|consensus | 459 | 97.68 | ||
| KOG2563|consensus | 480 | 97.64 | ||
| KOG3764|consensus | 464 | 97.61 | ||
| KOG0255|consensus | 521 | 97.58 | ||
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.54 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.53 | |
| KOG0254|consensus | 513 | 97.51 | ||
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.48 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.33 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.31 | |
| KOG2816|consensus | 463 | 97.19 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.15 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.14 | |
| KOG3098|consensus | 461 | 97.11 | ||
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.04 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.88 | |
| KOG2615|consensus | 451 | 96.81 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.81 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.77 | |
| KOG2533|consensus | 495 | 96.61 | ||
| KOG2532|consensus | 466 | 96.59 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.54 | |
| KOG4332|consensus | 454 | 96.49 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.31 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.25 | |
| KOG3626|consensus | 735 | 96.06 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.02 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.98 | |
| KOG3762|consensus | 618 | 95.97 | ||
| KOG0252|consensus | 538 | 95.85 | ||
| KOG0637|consensus | 498 | 95.72 | ||
| KOG3098|consensus | 461 | 95.0 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.68 | |
| KOG1479|consensus | 406 | 93.72 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 92.98 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 91.94 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.71 | |
| KOG3574|consensus | 510 | 91.58 | ||
| KOG1330|consensus | 493 | 90.16 | ||
| KOG3880|consensus | 409 | 89.39 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 88.95 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 87.07 | |
| KOG0637|consensus | 498 | 85.32 | ||
| KOG2563|consensus | 480 | 84.59 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 84.36 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 83.35 | |
| KOG1237|consensus | 571 | 81.75 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-18 Score=135.66 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=119.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++++..+. +++.+++.++.+++++++|+++||+|||+.++++.++..++.++..++++++.++++|++.|++.++..+
T Consensus 196 ~~gls~~~~-g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p 274 (742)
T TIGR01299 196 DLCIPDSGK-GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP 274 (742)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467888899 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------------hhccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL---------------------------------------LPQLH 136 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~ 136 (157)
....++.|++|++.|++..+....+..+|..+++.+ ...+.
T Consensus 275 ~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 275 IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998887766665554444321 12235
Q ss_pred cCCcccccCCCChhhhhhcc
Q psy69 137 RESSHILVTPGEASWIGKIS 156 (157)
Q Consensus 137 ~~~~~~~~~~~~~~w~~~~~ 156 (157)
||+|+|+..+++.+...+++
T Consensus 355 PESPrwL~~~gr~~eA~~iL 374 (742)
T TIGR01299 355 PESPRFFLENGKHDEAWMIL 374 (742)
T ss_pred CCCHHHHHHCCCHHHHHHHH
Confidence 99999998887766665543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=124.25 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=96.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC------HHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD------VLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~ 90 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+.++.++..++..+..++++ ++.++++|++.|++.
T Consensus 51 ~~~~~~~~-~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 51 GPLPSSVS-AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence 34566777 89999999999999999999999999999999999999888888887665 678899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
+...+..+.+++|.+|++.|++..+..+....+|..++
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987776665554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=123.06 Aligned_cols=130 Identities=21% Similarity=0.285 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
+.+.+++.+|.++|++..++++||+|||..+..+.++..++..++.++ +++..++++|++.|+..|......+.|++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 677888999999999999999999999999999988888887776654 67889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhhhccccCCcccccC-CCChhhhh
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSA----------------------------VLLPQLHRESSHILVT-PGEASWIG 153 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~~~~~w~~ 153 (157)
|..|++.||.......++..+|..++. ++.-.+.||+|+|+.. +++++.++
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~ 222 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEAR 222 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHH
Confidence 999999999999888888887766662 2223345999999988 78877776
Q ss_pred hc
Q psy69 154 KI 155 (157)
Q Consensus 154 ~~ 155 (157)
|-
T Consensus 223 ~s 224 (485)
T KOG0569|consen 223 KA 224 (485)
T ss_pred HH
Confidence 64
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=126.28 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=117.5
Q ss_pred Cccccc---HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIY---KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~---~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
++++++ +.+. ++..+.+.++..+++++.|+++||+|||+.++++.++..++.++..++++++.++++|++.|++.+
T Consensus 117 ~e~~l~c~~~~~~-~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~ 195 (505)
T TIGR00898 117 TEWDLVCEDAWKV-DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG 195 (505)
T ss_pred EEecceechHHHH-HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcc
Confidence 347777 8888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhccccCCcccccCCCC
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL-----------------------LPQLHRESSHILVTPGE 148 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 148 (157)
...+....++.|++|+++|++..+....+..+|..+++.+ ..++.||+|+|+..+++
T Consensus 196 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~ 275 (505)
T TIGR00898 196 GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR 275 (505)
T ss_pred chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC
Confidence 9999999999999999999998887766666554444322 22345899998877766
Q ss_pred hhhhhh
Q psy69 149 ASWIGK 154 (157)
Q Consensus 149 ~~w~~~ 154 (157)
.++..+
T Consensus 276 ~~~a~~ 281 (505)
T TIGR00898 276 IEEALK 281 (505)
T ss_pred HHHHHH
Confidence 555433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=119.77 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=108.7
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.++..++..+..++++++.+++.|++.|++.+..
T Consensus 35 ~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 113 (412)
T TIGR02332 35 GKDLGLSATMF-GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGF 113 (412)
T ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH
Confidence 45688999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.+....++.|++|+++|++..+.++....+|..+++.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999888887777766655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=123.86 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFM 101 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~ 101 (157)
.+. +++.+...++..+++++.|+++|++|||+.++.+.+.+.++.++.++++|..++.++|++.|+|.|......+.|+
T Consensus 89 ~~~-s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 89 VRQ-GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 466 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------hccccCCcccccCCCChhhhhh
Q psy69 102 TALVVILMASLSAHSVNMSIGMCQGFSAVLL---------------------------PQLHRESSHILVTPGEASWIGK 154 (157)
Q Consensus 102 ~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~w~~~ 154 (157)
+|+.|++.|+...+..+....+|..++..+. ....||+|+|+.++++.++.++
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~ 247 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR 247 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH
Confidence 9999999999998877776665555542221 2334799999998888877766
Q ss_pred c
Q psy69 155 I 155 (157)
Q Consensus 155 ~ 155 (157)
.
T Consensus 248 ~ 248 (513)
T KOG0254|consen 248 S 248 (513)
T ss_pred H
Confidence 4
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=124.17 Aligned_cols=141 Identities=22% Similarity=0.147 Sum_probs=116.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..+.+.... .+..+++.+|..+|+++.|.++||+|||++++++.++..++.+..++++|++.++++|++.|++.++..
T Consensus 111 ~~~c~~~~~~-~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 111 NLVCDSSTLV-ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred ceeeCcHhHH-HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 3455566777 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhhccccCCcccccCCCChhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS-----------------------AVLLPQLHRESSHILVTPGEASW 151 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~w 151 (157)
.....++.|+++++.|+.........+..+.... .++...+.||+++|+..+++.++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 9999999999999999988887222222111111 11223444699999999998877
Q ss_pred hhhcc
Q psy69 152 IGKIS 156 (157)
Q Consensus 152 ~~~~~ 156 (157)
..+++
T Consensus 270 a~~~l 274 (521)
T KOG0255|consen 270 AIKIL 274 (521)
T ss_pred HHHHH
Confidence 76653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=117.62 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=108.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.+..+. ++..+.+.++..+++++.|++.||+|||+++..+..+.+++.+.++++++++.+++.|++.|++.+...
T Consensus 37 ~~~~~s~~~~-g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 37 QASGMSFSVA-ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 4578999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|.+| ++|++..+.+..+...|..+++.+.+.+.
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999987 77899999888777777777777666554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=116.49 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=97.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh------------cCHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA------------DDVLQLCIGRF 84 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 84 (157)
++.++.+. ++..+.+.++..+++++.|+++||+|||++++.+..++.++....++. +.+..++++|+
T Consensus 50 ~~~~~~~~-~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLL-GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence 47788899 999999999999999999999999999999999999988887766652 12456789999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+.|++.|...+....+++|++|+++|++..+..+.+..+|..+++
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~ 173 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887777666655543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=114.61 Aligned_cols=120 Identities=13% Similarity=-0.052 Sum_probs=108.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.....++...+.++++++.++++|++.|++.+...
T Consensus 37 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 37 QSFHMQTAQV-GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred hHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4588999999 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....++.|++|+|+|++..+....+..++..+++.+...+
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999988888887777776555433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=114.86 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=108.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+..+.+...++..+..++++++.+.++|++.|++.+...
T Consensus 46 ~~~~~s~~~~-~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~ 124 (426)
T PRK12307 46 ADLGLTDMEG-AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY 124 (426)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH
Confidence 4578899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+....++.|.+|+|+|++..+....+..+|..+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999998888888777777655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=114.05 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|.+.||+|||+.+..+.++..++..+..+.++++.+++.|++.|++.+...
T Consensus 48 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 48 QDLGISEGVA-GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 4578999999 999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|++|+|+|++..+......+++..+++.+.+.+.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877777777766655543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=113.31 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=107.6
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..++.++.|+++||+|||+.++.+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 40 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 118 (405)
T TIGR00891 40 GEFGLTTVDA-ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY 118 (405)
T ss_pred HHhCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh
Confidence 4578899999 999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+....++.|.+|+++|++..+..+....+|..+++.+..
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887777777665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=113.37 Aligned_cols=117 Identities=17% Similarity=0.039 Sum_probs=109.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++++..+. ++..+.|.++..+++++...++||+.||+.++....+++++.+++.+++|++.++++|++.|+..|..+
T Consensus 41 ~dl~vs~~~a-G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~ 119 (394)
T COG2814 41 ADLGVSEGAA-GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119 (394)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3488999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+.......+++|+++|+++.+....+..++..+|..+.
T Consensus 120 ~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999998888886666654443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=111.61 Aligned_cols=119 Identities=18% Similarity=0.073 Sum_probs=107.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++++.++.+. +++.+...++..++.++.|+++||+|||+.+..+.+...++..+..+.++++.++++|++.|++.+..
T Consensus 21 ~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 99 (399)
T TIGR00893 21 QEDLGLSAAQY-GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF 99 (399)
T ss_pred HHhhCCChhhH-HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 34578899999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.+....++.|++|+|+|++..+..+....+|..+++.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 9999999999999999999999888777777666655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=110.93 Aligned_cols=119 Identities=9% Similarity=-0.105 Sum_probs=95.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. +++.+.+.++..+++++.|+++||+|||+.+.........+.......+++..++++|++.|++.+. .
T Consensus 19 ~~~~~s~~~~-g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 19 EDIDVSKEEL-GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 3578899999 9999999999999999999999999999886655544444333223337899999999999999986 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
......++|++|+++|++..+..+.+..+|..+++.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566679999999999999999888887777775554444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-16 Score=120.40 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=117.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.+|+++... +++++.+.+...+.+|++|++.||+.||+++.++..+..++.+..+++.++|++.++|.+.|+|-+..
T Consensus 60 ~~~fni~~s~~-Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 60 QTYFNISDSEL-GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHhcCCCchhc-cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 34588999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
.++.+++++|.+|..+|++..++++.....|.++|..+...+.+.+..|
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999988888876666665544433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-18 Score=133.65 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhhhhHHHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+. ++..+...+|..+|+++.|+++||+|||+.++.+.++..++.++..+++ +++.+.++|++.|++.|......
T Consensus 45 ~~~~-~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 45 SLLS-SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHH-HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566 8899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------hhccccCCcccccCCCC
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL-----------------------------LPQLHRESSHILVTPGE 148 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 148 (157)
+.|+.|..|++.|++.....+....+|..++..+ .....||+|+|+..++|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 9999999999999988877777665554443222 22334999999999998
Q ss_pred hhhhhhcc
Q psy69 149 ASWIGKIS 156 (157)
Q Consensus 149 ~~w~~~~~ 156 (157)
.+..+|++
T Consensus 204 ~~~A~~~l 211 (451)
T PF00083_consen 204 DEEAEKVL 211 (451)
T ss_pred cccccccc
Confidence 88777764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=110.29 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=113.7
Q ss_pred CccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy69 7 PLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFIT 86 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (157)
.+|.+.+ ++|.++.+. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.....++++++.+.++|++.
T Consensus 28 ~lp~~~~--~~~~s~~~~-G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 104 (381)
T PRK03633 28 LVPLWLA--QEHLPTWQV-GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVA 104 (381)
T ss_pred HHHHHHH--HcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444 467899999 9999999999999999999999999999999999999999988888899999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|++.+...+.....+.+..++++|++..+..+....+|..+++.+.+.+.+
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888888888899999999999999998888888888888776654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=111.35 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=103.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||++++.+..+..++..++.++++++.++++|+++|++.+...
T Consensus 44 ~~~~~~~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 44 RDFNADVSLA-PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3477888999 999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999999998888777776666666654443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-15 Score=113.43 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=110.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+.+.++..++.++.|+++||+|||+.++.+.++..++..++.++++++.++++|++.|++.+...
T Consensus 30 ~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~ 108 (485)
T TIGR00711 30 GDLGSSLSQV-QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI 108 (485)
T ss_pred HhcCCChhhh-hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHH
Confidence 3477888899 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.+.
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 999999999999999999999998888888888776665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=109.37 Aligned_cols=116 Identities=24% Similarity=0.210 Sum_probs=103.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|++.+...
T Consensus 43 ~~~~~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 121 (406)
T PRK11551 43 QEFGLDVAQM-GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGAL 121 (406)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHH
Confidence 3478899999 999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|.+|+++|++..+..+....+|..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988777766665555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=112.83 Aligned_cols=122 Identities=11% Similarity=-0.048 Sum_probs=109.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+.+.++..+..++.|+++||+|||+.++.+.....++.++++++++++.++++|+++|++.+...
T Consensus 34 ~~l~~s~~~~-~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~ 112 (495)
T PRK14995 34 MTLGASGNEL-LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIV 112 (495)
T ss_pred HHhCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3477888899 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+.....+.+.+ |+++|++..+.......+|..+++.+.+.+.+
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 87777776765 78999999999999888888888777666643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=108.43 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=107.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+.....++.....+.++++.+.+.|++.|++.+...
T Consensus 33 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 33 ADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGS 111 (385)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHH
Confidence 4478899999 999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777776666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=107.33 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=103.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-----DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+..+..+..++..+..+.+ +++.+++.|++.|++.+
T Consensus 29 ~~~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 107 (365)
T TIGR00900 29 GTGSASVL-SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQA 107 (365)
T ss_pred hhccHHHH-HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 56788999 9999999999999999999999999999999999888888877777766 89999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
...+...+++.|++|+++|++..+..+....++..+++.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 108 FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887777666555433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=108.83 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=103.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++|.++.+. ++..+...++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+++.|++.|++.+...
T Consensus 31 ~~~g~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~ 109 (382)
T PRK10091 31 HDVGISIPAA-GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF 109 (382)
T ss_pred HHcCCCHHHH-hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH
Confidence 3578899999 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|++|+++|++..+....+..++..+++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 8888899999999999988887766666655555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=107.93 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=107.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+.+.++..+++++.|+++||+|||+.+..+.+...++..+..++++.+.+++.|++.|++.+...
T Consensus 25 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 25 EELGLSPSQI-GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp CCSTTTSHCH-HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 4577899999 999999999999999999999999999999999999998886666666888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+....++.|++|+++|++..+..+....++..+++.+.+.+.
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 999999999999999999999999999888888877665554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=110.30 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=104.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++.++.+. +++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++++.+.+.|++.|++.+...+
T Consensus 52 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 130 (434)
T PRK11663 52 DLGLSRSDI-GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP 130 (434)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence 478899999 9999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
....++.|++|+++|++..+..+....+|..+++.+
T Consensus 131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998887777666665443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=107.27 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~ 92 (157)
++++++++.+. +++.+...++..+++++.|+++||+|||+.+..+.+...++..+..+.+ +++.+++.|++.|++.+.
T Consensus 29 ~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 29 KDDLGLSTAQL-GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHhCCCHHHh-hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 34588999999 9999999999999999999999999999999999999999999998888 999999999999998654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
......++.|++|+++|++..+.......+|..+++.+.
T Consensus 108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 566788999999999999998877755555544444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=109.64 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=102.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. ++..+...++..+++++.|++.||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 35 ~~~~~s~~~~-g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~ 113 (394)
T PRK03699 35 EYFNLPVSSM-SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITM 113 (394)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhc
Confidence 3578899999 999999999999999999999999999999999999999999888899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....++.|.+|+++|++..+..+...+++..+++.+.
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999888766665555555554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-14 Score=109.21 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=112.0
Q ss_pred cccccHHH-HHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQ-VLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++|+++.+ . +.+.+.+..++.+..++.|+++||+|.|+++..+.+...+...+..+++++..+.+.|++.|++.+...
T Consensus 55 elglT~~qv~-G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~ 133 (511)
T TIGR00806 55 VLNFTEETVT-NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI 133 (511)
T ss_pred HcCCCHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999 8 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....++.+++|+++|+++++..+.+..+|..+++.+.+++
T Consensus 134 -A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 134 -AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred -HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887777663
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=114.02 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHH--------HHHHHHHHHhhhhhhHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQ--------LCIGRFITGVAIGKSELNHQLF 100 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~ 100 (157)
.+...++..+++++.|+++||+|||+++.++.+++.++.+++++++++.. ++++|+++|++.|..++....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 47788999999999999999999999999999999999999999999864 7889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 101 MTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 101 ~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
++|++|+++|++..+....+..+|..++.
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776655555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-14 Score=105.87 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=105.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|+++.+. ++..+...++..++.++.|+++||+|||+.+..+.+...++.....+.++++.+.+.|++.|++.+...+
T Consensus 20 ~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 98 (377)
T PRK11102 20 DFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASV 98 (377)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 478899999 9999999999999999999999999999999999999999999998899999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888777766666655443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=109.64 Aligned_cols=121 Identities=9% Similarity=-0.056 Sum_probs=108.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++.++.+. +.+.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+. .+++.+++.|+++|++.+..
T Consensus 70 ~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 70 NFKWSGALQ-GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCHHHh-hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 578899999 999999999999999999999999999999999998888887776543 56788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+....+++|++|+++|++..+....+..+|..+++.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888888888777665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=107.37 Aligned_cols=114 Identities=13% Similarity=-0.000 Sum_probs=98.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +++.+.+.+...+..++.|+++||+|||++++++..+..++.+.+.+..+. ++.|+++|++.+...+
T Consensus 32 ~~~~s~~~~-~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~p 107 (393)
T PRK11195 32 ELHYPDWSQ-PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSP 107 (393)
T ss_pred HcCCcHHHH-HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456678888 999999999999999999999999999999999999988887776665553 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
...+++.|++|+++|+++.+..+.....+..+|+.+.+
T Consensus 108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG 145 (393)
T PRK11195 108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG 145 (393)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888777766666655543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-14 Score=108.89 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=106.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.+. ++..+...++..+++++.|+++||+|||+.+..+.+...++.++..+.++++.+++.|++.|++.+..+
T Consensus 48 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 126 (496)
T PRK03893 48 GEFGLTTVQA-ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEY 126 (496)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+....++.|.+|+++|++..+.......+|..+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877777777765543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-14 Score=107.45 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=110.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~ 90 (157)
++++++++.+. +++.+...++..+++++.|++.||+|||+++..+..+.+++..+... .++++.+++.|++.|++.
T Consensus 30 ~~~~~~s~~~~-g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~ 108 (410)
T TIGR00885 30 QQAFTLTAFQA-ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGL 108 (410)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhH
Confidence 44578999999 99999999999999999999999999999999999999998877544 357889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+..++..+.++.+..|++.|++..+..+...++|..+++.+.+.+.
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 109 GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877664
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=108.30 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=99.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH-----hcCHHHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF-----ADDVLQLCIGRFIT 86 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~l~ 86 (157)
++.|.|+.+. ++..+.+.++..+++++.|+++||+|||+.++.+.+...++.+.. .+ .++++.+++.|++.
T Consensus 44 ~~lg~s~~~~-g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (392)
T PRK12382 44 HDLGFGNTMV-GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL 122 (392)
T ss_pred HhcCCcHHHH-HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence 4578899999 999999999999999999999999999999998887766654332 11 24678889999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
|++.+...+....++.|.+|+++|+++.+..+.+...+..+++.+.+.+
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l 171 (392)
T PRK12382 123 GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL 171 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888889999999999999999988777766666665554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.6e-14 Score=105.33 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=103.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.+...++..+....++.+.+++.|++.|++.+...
T Consensus 31 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 109 (392)
T PRK10473 31 ADLNASEAQL-HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCY 109 (392)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHH
Confidence 3477899999 999999999999999999999999999999999999999998888888999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....++.|.+|+++|++..+..+....++..+++.+.
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998887776666655555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=109.54 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~ 97 (157)
....+...++..+++++.|+++||+|||+.+..+.+++.++.+++++++++. .++++|+++|++.|...+..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3444556677779999999999999999999999999999999998888764 57889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
..++.|++|+++|++..+..+.+...|..++..
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887766655555444443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-14 Score=108.02 Aligned_cols=120 Identities=15% Similarity=0.054 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|.++.+. ++..+.+.++..++.++.|+++||+|||+.++.+..+..++.++..+.++++.+++.|+++|++.+...+
T Consensus 39 ~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 117 (471)
T PRK10504 39 SLGESPLHM-HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVP 117 (471)
T ss_pred HhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHH
Confidence 478899999 9999999999999999999999999999999998888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
....++.|.+|+++|++..+..+....++..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 118 VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999888877777777766655543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-14 Score=108.06 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhcCHHHHHHHHHHHHhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~ 90 (157)
++++++++.+. ++..+.+.++..+++++.|++.||+|||+++..+..+..++.+++ .++++++.++++|+++|++.
T Consensus 53 ~~~~~~s~~~~-gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~ 131 (438)
T PRK10133 53 QQAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL 131 (438)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45688999999 999999999999999999999999999999999999999998775 45789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+...+..+.++.|..|+++|.+..+..+....+|..+++.+.+.
T Consensus 132 g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777777767778888888888888777543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=105.57 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=108.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+...++..++.++.|+++||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+...
T Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (398)
T TIGR00895 45 AEWGLDPVQL-GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123 (398)
T ss_pred hccCCCHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccch
Confidence 3477899999 999999999999999999999999999999999999888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887777776665444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=108.41 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=98.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---c-----CHHHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---D-----DVLQLCIGRFIT 86 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~l~ 86 (157)
++++.++.+. +++.+.+.++..+++++.|+++||+|||+++..+.+...++.....+. + +++.+++.|++.
T Consensus 44 ~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 122 (399)
T PRK05122 44 DQLGFSAFLA-GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL 122 (399)
T ss_pred HhcCccHHHH-HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence 4577899999 999999999999999999999999999999999988877766554432 2 456788999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
|++.+...+....++.|.+|+++|++..+..+.....+..+++.+..
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 123 GIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988777666655555544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=105.81 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=97.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+++..+.++..++...+.++++++.++++|++.|++.+..+
T Consensus 31 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 109 (377)
T TIGR00890 31 RYFGVGVTAV-AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAY 109 (377)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3478899999 999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQG 126 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~ 126 (157)
......+.|++| |+|++..+....+.+++..
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 140 (377)
T TIGR00890 110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSF 140 (377)
T ss_pred HhHHHHHHHHcC-cccHHHHHHHHHhcchhHh
Confidence 888888888887 5688888877766655443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=104.27 Aligned_cols=120 Identities=22% Similarity=0.269 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. ++..+...++..+++++.|+++||+|||+.+..+.....++.....+.++++.+.+.|++.|++.+...+.
T Consensus 29 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 107 (352)
T cd06174 29 LGLSASQA-GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPA 107 (352)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHh
Confidence 57788999 99999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...++.|.+|+|+|++..+..+....+|..+++.+...+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888877754
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=104.54 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=100.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|.++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 41 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 119 (406)
T PRK15402 41 EDFNAGAEWV-PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIG 119 (406)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHH
Confidence 4578899999 999999999999999999999999999999999999999888888889999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....++.|.+|+++|.+..+.......++..+++.+
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999887776555444444444444
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=108.01 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
+..-. +.+.+.+.++.++.++.+|.++||+|||++++.+.+..+++..+.+.+.++..+.+.|++.|+.-|- .....+
T Consensus 66 ~~~ya-GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 66 SVFYA-GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred cchhh-hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 44556 8999999999999999999999999999999999999999999999999997777779999999886 556779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 100 FMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 100 ~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+++|.++++.|++.++..+..+++|..+||++.+.+..
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999999999999887765
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=104.35 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=108.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++.+.++.+. ++..+...+...+.+++.|+++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 39 ~~~g~s~~~~-gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 117 (400)
T PRK11646 39 DQLGWAAVMV-GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFD 117 (400)
T ss_pred HHhCCcHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3467899999 999999999999999999999999999999999999999999998888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+...+++.|.+|+|+|++..+..+....++..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988888888777766655543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=108.69 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=101.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+...++..+++++.|+++||+|||+.+..+.+...++.++..++++++.+++.|++.|++.+...
T Consensus 23 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (379)
T TIGR00881 23 EEIGLSKTDL-GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGW 101 (379)
T ss_pred HHhCCCHhHH-HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Confidence 3478899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+....++.|++|+++|++..+..+....+|..+++
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 99999999999999998887766655555554444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=113.30 Aligned_cols=113 Identities=11% Similarity=-0.120 Sum_probs=95.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~ 89 (157)
++++++..+. +++.+.+.++..++.++.|+++||+|||+.+..+.+...+.....+. +++++.+++.|++.|++
T Consensus 57 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (467)
T PRK09556 57 STYGLSTTEL-GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFF 135 (467)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4578899999 99999999999999999999999999999988887777666655544 57899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
.+...+....++.|++|+++|++..+..+.+..+|..++
T Consensus 136 ~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~ 174 (467)
T PRK09556 136 QSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGA 174 (467)
T ss_pred HhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHH
Confidence 999889999999999999999888776655554444443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=103.53 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=105.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+...++..+++++.|+++||+|||+.+.++.+...++.....+.++++.++++|.+.|.+.+...
T Consensus 36 ~~~g~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 114 (395)
T PRK10054 36 RQYSLSVDLI-GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFS 114 (395)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999 999999999999999999999999999999999998888888888888899888888989888878778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....+..|..|+++|++..+..+....+|..+++.+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998888888787777776665554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=108.27 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
...++..+++++.|+++||+|||+.+..+.++..++..++++++++. .++++|+++|++.|...+....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 45577889999999999999999999999999999999999999876 4778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
|++|+++|++..+....+..+|..++..
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~ 179 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTG 179 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887777776666655543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-13 Score=104.17 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=102.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~ 89 (157)
.++++++.|. ++..++..++..+..++.|++.||+|.|+.+.++.++..+......++ ++++.+++.|++.|++
T Consensus 63 ~~~~ls~~q~-g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig 141 (462)
T PRK15034 63 IGFNFTTDQL-FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA 141 (462)
T ss_pred hhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH
Confidence 3588999999 999999999999999999999999999999999999998888888876 7999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+..++.....+++++|+++|+++.++.....++|..+++++.|.
T Consensus 142 -g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 142 -GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred -HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66788899999999999999999998865555566555555443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=106.45 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=96.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++++..+. +++.+.+.++..+++++.|+++||+|||+.+..+.+...++..+..++++++.++++|++.|++.+..
T Consensus 64 ~~~gls~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~- 141 (476)
T PLN00028 64 DNLNLTKSDI-GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF- 141 (476)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-
Confidence 4578899999 99999999999999999999999999999999999888888888888999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
.....+++|++|+++|++..+..+....+|..+++.
T Consensus 142 ~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 142 VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999988776554444444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=105.71 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhhhhHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+..+. +++.+.+.++..+++++.|+++||+|||+.++.+.++..++..+..+.. +++.+++.|++.|++.+...+
T Consensus 68 ~~~~~~-~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 146 (481)
T TIGR00879 68 YSSSLW-GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASA 146 (481)
T ss_pred CChhHH-HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHh
Confidence 558889 9999999999999999999999999999999999999888888875543 455889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
....++.|++|+++|++..+..+....+|..+++.+.
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888877777766
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-13 Score=101.91 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=100.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.....++.....+.++++.+++.|++.|++.+...
T Consensus 36 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 114 (394)
T PRK11652 36 RDLNVREGAV-QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGG 114 (394)
T ss_pred HHhCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHH
Confidence 4578899999 999999999999999999999999999999999999988888888888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+....+..|.++++++++..+..+.+..++..+++.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999998888777766666555554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=102.61 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=100.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. ++..+++.++..+++++.|+++||+|||+.+..+..+..++..+..+.++++.+++.|++.|++.+...
T Consensus 34 ~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 112 (401)
T PRK11043 34 ADLQTSASAV-SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAA 112 (401)
T ss_pred HHHCCCHHHH-HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHH
Confidence 4578899999 999999999999999999999999999999999998988888888889999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
.....++.|.+|++++.+..+..+....++..+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 150 (401)
T PRK11043 113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLG 150 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999888777666555555554554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-14 Score=106.84 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=83.8
Q ss_pred HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy69 33 VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMTAL 104 (157)
Q Consensus 33 ~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~ 104 (157)
.++..+++++.|+++||+|||+.++.+..+..++..++.++++++ .++++|++.|++.+...+....++.|+
T Consensus 66 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 145 (434)
T PRK15075 66 FLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEI 145 (434)
T ss_pred HHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh
Confidence 344457899999999999999999999999999999999998876 357899999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 105 VVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 105 ~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+|+++|++..+..+....++..+++.+
T Consensus 146 ~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 146 ATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987776655554444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=100.78 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=99.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.+++++++.+. ++..+.+.++..+++++.|+++||+|||+.+.++.+...++.... ..++.+.+++.|++.|++.+..
T Consensus 27 ~~~~~~s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~ 104 (355)
T TIGR00896 27 RSALGMSFSVA-GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAII 104 (355)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Confidence 34578899999 999999999999999999999999999999999888877777666 6788888899999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....+.++.|.+| ++|++..+..+....+|..+++.+.+.+
T Consensus 105 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 105 NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888886 5788888887776666666555444333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=99.77 Aligned_cols=117 Identities=14% Similarity=0.048 Sum_probs=98.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---H-hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---F-ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~G~~~g 91 (157)
+++.++.+. ++..+.+.++..+++++.|++.||+|||+.+..+..+..++..+.. . .++++.+++.|++.|++.+
T Consensus 42 ~~g~s~~~~-g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 42 ALGLSPQQS-ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HhCCCHHHh-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 468899999 9999999999999999999999999999999999888887765442 2 2477788889999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQ-GFSAVLLP 133 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~ 133 (157)
........++.|.+|+++|++..+..+...++|. .+++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~ 163 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS 163 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778889999999999999998888777765 35554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-13 Score=85.80 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMA 110 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r 110 (157)
...++..++.++.+++.||+|||+.+..+.....++.......++.+...+.+++.|++.+...+....++.|.+|+++|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 45677888999999999999999999998888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 111 SLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++..+..+....++..+++.+.+.+.+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 999999999999999999888877753
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=99.79 Aligned_cols=107 Identities=13% Similarity=-0.006 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhhhh
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~ 93 (157)
++++.+. ++..+...++..+++++.|+++||+|||+.++.+.++..++.++..+. .+++.+++.|++.|++.+..
T Consensus 59 g~s~~~~-g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~ 137 (452)
T PRK11273 59 GFSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 137 (452)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhcc
Confidence 7899999 999999999999999999999999999999999998888888877765 36778888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQ 125 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~ 125 (157)
.+.....+.|++|+++|++..+..+.+..++.
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 88777888999999999999988776666543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-14 Score=113.45 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=109.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--------------------
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------------------- 74 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------------------- 74 (157)
+++++++.+. +++.+.+.++..++.++.+++.||+|||+.+.++.++++++.++.++.+
T Consensus 61 k~F~lss~~~-G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 61 RRFKLSTSSS-GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhCCCCCcc-eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 3478899999 9999999999999999999999999999999999999999998876542
Q ss_pred -------------------------------CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 75 -------------------------------DVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGM 123 (157)
Q Consensus 75 -------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~ 123 (157)
.+..++++|++.|++.+..++....++.|++|++.|++..+..+....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 1345678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q psy69 124 CQGFSAVLLPQLHR 137 (157)
Q Consensus 124 ~~~~~~~~~~~~~~ 137 (157)
|..+|+++.+.+.+
T Consensus 220 G~~lG~llgg~l~~ 233 (633)
T TIGR00805 220 GPAFGYLLGSFCLQ 233 (633)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999888777654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-13 Score=102.37 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g~ 92 (157)
.|+++.+. ++..+.+.++..+++++.|+++||+|||+.+..+.++..++..+..+. .++..+.+.|++.|++.+.
T Consensus 56 ~g~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~ 134 (438)
T TIGR00712 56 QGFSKGEL-GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGM 134 (438)
T ss_pred cCCCHhHh-HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhc
Confidence 47899999 999999999999999999999999999999998888888887776553 4566778899999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
.++.....+.|++|+++|++..+..+....++..+++
T Consensus 135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 8888889999999999999999888777665555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=101.38 Aligned_cols=123 Identities=12% Similarity=0.016 Sum_probs=110.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g 91 (157)
+++++.++.+. +++.+.++.|..++.++.|++.||+|-|+++..+.++.++.+++...+. +++.+++.|+++|++.|
T Consensus 65 ~~~~~ws~~~k-~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 65 AGEYDWSSTEK-GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred CceecCCHHHH-HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 45688899999 9999999999999999999999999999999999999999999988764 45677899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++.......++.|+++|++..+....+..+|..++..+.+.+..
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~ 189 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE 189 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999999999999998888888877777666655543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=102.07 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
.....+..++.+++.++.|+++||+|||++++.+.++.+++.++..+.++...+++.+++.|++.+...+....+++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777899999999999999999999999999999999888888888888888888999988888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
|++.|++..++.+....+|..+++.+.+.+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-13 Score=99.10 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=110.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
...+-++.+. +++.....+.+.+.+++.|.+.||+|+|..++.+.+.+..++++.++..+++++++.|.++|++.+...
T Consensus 99 ~~~~~e~~~i-G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 99 ISLDRENTQI-GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred cCccccccch-hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 3345567888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILM-ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
....++++|.+|.+. |+++++..-.+.++|..+++.+.+.+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY 220 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY 220 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH
Confidence 999999999999875 799999888888888888877766654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-12 Score=98.14 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=95.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHH-HHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCI-GRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~ 93 (157)
++++.+..+. ++..+.+.++..++.++.|+++||+|||+.++.+.++..++.+++.++++++.+++ .|++.|++.+..
T Consensus 47 ~~~g~s~~~~-~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~ 125 (455)
T TIGR00892 47 QIFQATYSET-AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN 125 (455)
T ss_pred HHhCcchhHH-HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence 4577888999 99999999999999999999999999999999999999998888888888887765 578999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.......+.|++| ++|+++.+..+.+..++..+++.+
T Consensus 126 ~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 126 FQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred hhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH
Confidence 6667778889886 789999888777666555555333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=102.05 Aligned_cols=120 Identities=17% Similarity=0.071 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
.+|+++.+. +.+.+.+.++..++++++|+++|| +|||+++.++.+...++..+..+.++++.+.+.|++.|++.|...
T Consensus 42 ~lg~s~~~a-g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 120 (475)
T TIGR00924 42 GLGFSQEQA-FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFK 120 (475)
T ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcccccc
Confidence 378899999 999999999999999999999999 899999999999999999888888888888889999999999988
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILM---ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+...++++|.+|+++ |++..+..+...++|..+++.+.+.+.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998753 777777888888888777766655543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-12 Score=98.01 Aligned_cols=138 Identities=11% Similarity=0.080 Sum_probs=96.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLL-M--AFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++++.+. ....+...++..++.++.|+++||+|||+.+..+.+...+.... . ...++...+.+++++.|++.+..
T Consensus 281 ~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 281 LHYSEDHG-VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 56677777 77778888999999999999999999999887776544333222 2 22345667778899999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh---------------------------hhccccCCcccccC
Q psy69 94 ELNHQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVL---------------------------LPQLHRESSHILVT 145 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 145 (157)
......++.|.+|++.|++..+. ++.+...+ .+++.+ ...+.||+++++.+
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 77888899999999999987774 44433221 122111 12234899998875
Q ss_pred C-----CChhhhhhcc
Q psy69 146 P-----GEASWIGKIS 156 (157)
Q Consensus 146 ~-----~~~~w~~~~~ 156 (157)
+ ++.++.+|++
T Consensus 439 ~~~~~~~~~~~a~~~l 454 (490)
T PRK10642 439 GATPAASDIQEAKEIL 454 (490)
T ss_pred CccccccchhhHHHHh
Confidence 4 7777766654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=93.52 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=87.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhh-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQV-ASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++++.++.+. +++.+.+.+...+.+++.|.++||+||||.++. +.....++..+..++++++.+++.|++.|...+..
T Consensus 26 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 104 (375)
T TIGR00899 26 EEVRARPAMI-GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTA 104 (375)
T ss_pred cccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhh
Confidence 4578899999 999999999999999999999999999887654 45555666677788889998888999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy69 94 ELNHQLFMTALVVILMASLS--AHSVNMSIGMCQGFS 128 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~--~~~~~~~~~~~~~~~ 128 (157)
.+....+..|..|++.|.+. .+......++|..++
T Consensus 105 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig 141 (375)
T TIGR00899 105 NPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIG 141 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHh
Confidence 77788888898887776643 344443444444444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=97.37 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=96.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +++.+...++..+++++.|+++||+|||+.+..+..+.+++...... .++++.+.+.|++.|++.+
T Consensus 47 ~~~s~~~~-g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 125 (417)
T PRK10489 47 MTGSTLQV-GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGS 125 (417)
T ss_pred HHCCHHHH-HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45688899 99999999999999999999999999999998887777666554332 4567888899999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
...+....++.|.+|+++|++..+..+....++..+++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g 167 (417)
T PRK10489 126 LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG 167 (417)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 888888899999999999999988877777666666655543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=100.92 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=101.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcCHHH-HHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADDVLQ-LCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~g~~ 93 (157)
+.+.++.+. .++.+.+.....+..+++|+++|| +|||++++.+.+++.++.+.+.++.+... +.++|+++|++.|..
T Consensus 44 ~lg~~~~~a-~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~ 122 (489)
T PRK10207 44 QLGFSQEQA-FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF 122 (489)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc
Confidence 467888888 899888888888888999999999 99999999999999999998888765444 457899999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+++.|.+|++. |.+..+..+...++|..+++.+.+++.
T Consensus 123 ~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 123 KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998774 466677788888888888777666554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.5e-12 Score=94.57 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 24 VLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 24 ~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
. +.+.+...++..+++++.|+++||+|||+.+..+.+...++..+..+.++++.+++.|++.|++.+ ..+....++.|
T Consensus 56 ~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 56 S-GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 5 778888999999999999999999999999999998888888888888899999999999999765 45667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 104 LVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 104 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
.+|+++|++..+..+....++..+++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888877776666666555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=95.85 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL--------QLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
..++..+++++.|+++||+|||+.+..+.++..++..+..+++++. .+++.|++.|++.+...+....++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 3344457899999999999999999999999999999888888764 47789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 104 LVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 104 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+|+++|++..+..+.+..+|..+++.+
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777776666544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=106.63 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
+.... +++.+++.++..++++++|+++||+|||++++++.++..+..++.. ..++++.++++|++.|++.+...+.
T Consensus 45 ~~~~~-~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 45 QVILT-AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchH
Confidence 34456 8889999999999999999999999999999888766555554433 3567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+++.|++|+++|++..+.......+|..+++.+.+++.
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888777766554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=96.03 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=94.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh------cCHHHHHHHHHHHHh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA------DDVLQLCIGRFITGV 88 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~ 88 (157)
+++++++.+. +++.+.. ....+..++.|++.||+|||+++.++.++..++.++++++ ++++.+++.|++.|+
T Consensus 55 ~~lgls~~~l-~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 55 ARYNLTQRDL-STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHhCcCHHHH-HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 4578899998 8887763 3344567789999999999999999999999999998886 588999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGF 127 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~ 127 (157)
+.+...+.....+.+++| ++|++..+......++|..+
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHH
Confidence 999888888889999996 78899999888888887764
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-11 Score=87.14 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=111.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccch-hhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKT-TLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+ .+..+.....++.......++.+...+..++.|++.+...+
T Consensus 206 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 206 LGLSAAEA-GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence 36788888 99999999999999999999999999999 99999999888888888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+++|..|+++|++..+..+....++..+++.+.+.+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888765
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=89.73 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=103.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++.++.|++.||+|||+.+........++.....+.++.+.+.+..++.|++.+..++.
T Consensus 250 ~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 250 QGLSRSQA-GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred CCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence 46788888 89999999999999999999999999999988776666666665666677777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.+|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 89999999999999999999999999999999999888765
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-11 Score=87.87 Aligned_cols=120 Identities=12% Similarity=0.048 Sum_probs=101.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhhhhhH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDV--LQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~ 94 (157)
.+.++.+. +...+...++..+++++.|++.||+|||+.+..+.+...++.....+.++. ...+...++.|++.+...
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 235 LGLSDGFL-VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccch
Confidence 56777888 888999999999999999999999999999988888888777766665533 234456778888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+..+.+++|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999988877754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=86.20 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=105.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD-VLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +.......++..++.++.+++.||++||+.+..+.....++.....+.++ .+...+..++.|++.+...+
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (365)
T TIGR00900 242 LGRGSTHY-GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV 320 (365)
T ss_pred hCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 99999999999999999999999999999988877777777666666664 77778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....++.|.+|+++|++..+..+....++..+++.+.+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877654
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-12 Score=96.33 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=85.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhhh
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------DVLQLCIGRFITGVAI 90 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~ 90 (157)
++++... +.+..+..+|.++|+++.|++.||+|||+++...+++++++.+++++.. -..++...|++.|+|.
T Consensus 80 ~~ps~i~-~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 80 HYPSGVL-ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred cCCchHH-HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 4666777 8899999999999999999999999999999999999999998776642 1467788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
|+.++...+..+|..-.+.|+...+
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~ia 183 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIA 183 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeE
Confidence 9999999999999999998877655
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=93.37 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=102.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD---DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g 91 (157)
+++++|+.|. +++.++..+...+..++.|++.||+|.|+....+.++..+-++...++. +++.+++++++.|++.+
T Consensus 42 ~~~~LS~~q~-~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 42 SDFGLSEGQK-GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred cccCCCHHHH-HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc
Confidence 6789999999 9999999999999999999999999999999999999888888888764 45699999999999866
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
. ++....++++++|+|++|.++++.+ ..++|..+..++.|.+
T Consensus 121 s-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 121 S-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred e-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 5 7778899999999999999999888 6666666665555544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=88.20 Aligned_cols=124 Identities=10% Similarity=0.020 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+.++.+. +.+.+...++..++.++.+++.||+|||+.+..+.....+... .....++.+.+.+..++.++..+...
T Consensus 268 ~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 268 DLGLSPHTV-ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence 357788888 9999999999999999999999999999988877665533332 22334455566666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
+..+.+++|.+|++.|++..+..+....++..+++.+.+.+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999999988889999999999988877544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=85.06 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=95.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+......+.......+.....+.+...+..++.|++.+...+.
T Consensus 280 ~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 358 (398)
T TIGR00895 280 LGFSLSLA-ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSG 358 (398)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888 88899999999999999999999999995544433333333222233556777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
...+++|.+|++.|++..+..+....++..+++.+.+.+
T Consensus 359 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 359 LYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999998889999998887654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=93.20 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=109.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++.++|..|. +.+.+.+.+.+.++-.+.|.++||.+.|..+-.++++.++..++++++++.+.+.++.++.|..+|...
T Consensus 57 e~~~lsk~~l-G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 57 EDGGLSKTQL-GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+.+...+..++|+++||+..+.++...++|.++.+.+.
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99999999999999999999999999998877776665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=91.76 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=93.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~ 93 (157)
+.++++.+. +.+.+.+.....++++++|+++||+ |||++++++.++..++..+....+ +...+.+...+..++.|..
T Consensus 39 ~lgls~~~a-~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~ 117 (493)
T PRK15462 39 QLKYDDNHA-YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF 117 (493)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence 367899999 9999999999999999999999999 999999999999888876665433 2233344444555666666
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+++.|.+|++ .|.+..+..+...++|..+++.+.+++.
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999975 6877888888878888888877766664
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=85.29 Aligned_cols=119 Identities=10% Similarity=0.090 Sum_probs=92.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchhh-hhhhHHHHHHHHHHHHh---cCHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTTL-QVASIPFFFGWLLMAFA---DDVLQLCIGRFIT 86 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 86 (157)
+++++.++. ++..+. .+...+ .+++|+++||+ ||||.+ +.+.+...+......+. .+.+.+....++.
T Consensus 17 ~~g~s~~~~-g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 93 (356)
T TIGR00901 17 SKNVSLKTI-GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI 93 (356)
T ss_pred HcCCCHHHH-HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 468899999 888655 344444 89999999998 898874 56666666666566665 3555666677788
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+++.+...+...+++.|++|+|+|++..+....+..+|..+++.+...+.+
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888899999999999999999999988888888888777655543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=87.44 Aligned_cols=120 Identities=13% Similarity=0.011 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+++.++.+. +...+...+...++.++.|+++||+|||+.+..+.....+........++.+..++.+++.++..+...+
T Consensus 246 ~~~~~~~~~-g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~ 324 (393)
T PRK15011 246 ELHLPEKLA-GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGG 324 (393)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888 8887777777888999999999999999987776655555444444566777777888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+|..|+ .|++..+..+....+|..+++.+.+.+.+
T Consensus 325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~ 365 (393)
T PRK15011 325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE 365 (393)
T ss_pred HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999985 48888888888888889999888887754
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=86.95 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=111.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~g 91 (157)
+.++++..|. +.++..++.|..+.+++.+++.+|+|+|+.++.+..++++++.+.. ...++..++++-++.|.|.+
T Consensus 41 ~~f~ls~~~a-~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~ 119 (422)
T COG0738 41 EVFDLTYFEA-SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIG 119 (422)
T ss_pred HHhCccHHHH-HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhH
Confidence 3478899999 9999999999999999999999999999999999999999998875 44678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++..+.|+..+.|++...+..+..+...++|..+++++...+..
T Consensus 120 ~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 120 LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999888888888899999999999988777654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=99.19 Aligned_cols=114 Identities=8% Similarity=-0.031 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH---HHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI---PFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
... ++..+.+.+...+.+++.|+++||+|||+++..... ............++++.++++|+++|++.+...+...
T Consensus 52 ~~~-~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 52 ALV-TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHH-HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 345 777888999999999999999999999997543222 2222222223347899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+++.|++|++.|++++++.+.+..++..+|+.+.+++.
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877776664
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=90.70 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=95.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~ 92 (157)
+++|+++.+. ....+.+........+++|+++|| +|||+.++.+.+...++..++.+++ +...+.++|++.|++.|.
T Consensus 50 ~~lg~s~~~a-~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 50 KQLGMSEADS-ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence 3467888888 777777666666666789999999 5999999999999998888887764 456667889999999998
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 93 SELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+....++.|.+|++. |....+..+...++|..+++.+.+++.
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999998643 344566777777888777776666553
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-10 Score=85.08 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhhhhhHHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----DVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
..+. +...+...++..++.++.+++.||+|||+.+..+.+...++..+..... +.+.+.+.+++.|++.+...+.
T Consensus 250 ~~~~-g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 250 VKNA-SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 7888888889999999999999999999999999988877766555532 2345667899999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++.|.+|++.|++..+..+ ...+++..+++.+.+.+.+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999886 56788899999998887653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-10 Score=83.93 Aligned_cols=112 Identities=15% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+.......++..++++..|++.||+|||+.+..+..+..++..+..+.++.+...++.++.|++.+...+.......|.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 331 (392)
T PRK12382 252 GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV 331 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45555677778889999999999999999998888888888777777778888888899999999888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|+++|++..+..+....++..+++.+.+.+.+
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 332 PSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888765
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=85.19 Aligned_cols=120 Identities=14% Similarity=0.014 Sum_probs=101.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +++.+...++..++.++.+++.||.++++.+..+.....++..+..+.++.+...++.++.|++.+...+.
T Consensus 254 ~g~~~~~~-g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 332 (417)
T PRK10489 254 WQMGAAQI-GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLL 332 (417)
T ss_pred cCCChhHh-HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 99999999999999999999999987777877777777777666666777777778888899988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++++|..|++.|++..+..+....++..+++.+.+.+.+
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 88899999999999999999888888888888888777654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=85.08 Aligned_cols=122 Identities=14% Similarity=0.061 Sum_probs=91.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHH--HHHhcCHHHHHHHHHHHHhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLL--MAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
+++|+++.+. ++..+...++..++.+..|+++||+|||+.+.........+..+ ....++.....+.+++.|+....
T Consensus 287 ~~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 287 QELGFSKEDA-INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG 365 (467)
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence 3467898898 89999999999999999999999999998766544433333222 22334566666778888865544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHR 137 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (157)
.......+..|.+|++.|+++.+..+....+ +..+++.+.+.+.+
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 4444456778999999999999999888775 66888888888876
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=83.33 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=108.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +.......++..+..+..+++.||+|+|+.+.++.+...+......+.++.+.+++...+.|++.+...+.
T Consensus 235 ~g~s~~~~-g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 235 AGISASAT-GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred CCCCHhHH-HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999 99988899999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++++. |+++|++..+.++ ...+++..+++.+.+.+.+.
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998 9999998888775 56788888999988888653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=81.95 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=95.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...........++.++.|++.||+|||+.+.++.+...+......+.++.+...+.+.+.|++.+...+
T Consensus 229 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 307 (375)
T TIGR00899 229 ELGLPDKLA-GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG 307 (375)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 8877777777778889999999999999988877666555554555566777777788899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+|..|++ +++..+..+....++..+++.+.+.+.+
T Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 308 IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998865 4588888888888899999888887754
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=82.80 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+...+...++..++.+..+++.||+|||+.+..+.....++..+..+.++.+...+..++.|++.+..++.......|.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~ 331 (399)
T PRK05122 252 ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV 331 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 45566777888899999999999999999988888877777777777778888888899999999988888778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|+++|++..+..+....++..+++.+.+.+.+
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888887777666643
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-11 Score=88.34 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=106.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
..++.+..+. .+++.....|..+++..+|..+|++|||+.+.+......+..++...++++.+++++|.+.|+|.|+ .
T Consensus 106 ~~w~~s~~q~-~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 106 EVWGPSEGQA-PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred hhhchhhhhh-hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-c
Confidence 4477888888 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhhhccccCCcccccCCCC
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA--------------------------VLLPQLHRESSHILVTPGE 148 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 148 (157)
+...++-.|..|..+|..-+... ..+.+|..+.. .....+.||+|++++.+++
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~ 262 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD 262 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC
Confidence 77777778888877766544333 33333322221 1123345999999988877
Q ss_pred hhhh
Q psy69 149 ASWI 152 (157)
Q Consensus 149 ~~w~ 152 (157)
...+
T Consensus 263 ~~kA 266 (528)
T KOG0253|consen 263 DYKA 266 (528)
T ss_pred hHHH
Confidence 6543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=85.67 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+..+. +.+.+...++..++.++.|++.||+|||+.+..+.++..+...+..+.++.+.+.+.+.+.|++.+......
T Consensus 258 ~~~~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 258 EQGTRVF-GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677 888888888899999999999999999999988888888887888888888888889999999988887888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccc
Q psy69 98 QLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+++|.+|++.+++..+. .+....+|..+++.+.+++.+
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988876543 556667777777777766654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=82.28 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccch-hhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKT-TLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G 87 (157)
.+++.++. +++...... .+..+++|+++||+ |||| .+..+.+..+++.....+. .+.+.+.+..++.+
T Consensus 29 ~g~~~~~i-g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 105 (402)
T PRK11902 29 EGLDIQTI-GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVA 105 (402)
T ss_pred cCCCHHHH-HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 57899999 988776664 58899999999999 7776 6777777777777766665 34666777777788
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+..+...+...+++.|++|+|+|++..+....+..++..++..+
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 88888888999999999999999999998888777666666543
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=84.72 Aligned_cols=122 Identities=14% Similarity=0.037 Sum_probs=107.9
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 13 YLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+++.+....+. +.+.+++.++.+++.++++.+.||+.-.+.+....+...+..++....+|++.+++.|++.|+..++
T Consensus 72 ~~edl~~~~~~l-~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 72 LKEDLKLVGNQL-GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred Cccccchhhhhh-hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 344566777888 9999999999999999999999999977777777777777776777788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
..+....++..++.+++|+...++++...++|..+|.++...+
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~ 193 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGV 193 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999999999999999999999998888888888877664
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=83.96 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHH--HHHHH--hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGW--LLMAF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~G~~~g 91 (157)
+.+.++.+. +.......++..++.++.++++||+|||+.+........+.. ....+ .++.+.......+.|++.+
T Consensus 249 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 249 TLGLSANSA-LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred hcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 356788888 888888999999999999999999999998775544433322 12222 2456666677888899888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
...+....+++|.+|++.|++..+. .+....++..+++.+.+.+.+..+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 8889999999999999999988885 455566777788888877766443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-09 Score=83.38 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=101.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF----ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g 91 (157)
..+.++.+. ++......++..++.++.|++.||+|||+.+..+.....++..+..+ ..+.+......++.|++.+
T Consensus 285 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~ 363 (485)
T TIGR00711 285 VLGYTALQA-GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMG 363 (485)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 357888899 99999999999999999999999999999988888887777766552 2345666677888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...........+..|+++|++..+..+....+|..+++.+.+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 364 CFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777888899999999999999999998998888887766653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=83.44 Aligned_cols=119 Identities=9% Similarity=0.016 Sum_probs=100.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.++.+. +.......++..+++++.|++.||+|+|+.+..+.++..++....... ++.+......++.|++.+..
T Consensus 290 ~g~s~~~a-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 290 HGLSPLEA-GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHH
Confidence 57888999 999999999999999999999999999998888887777666554432 35556667888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.....+.+..|+++++...+..+....+|..+|+.+.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 369 LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988888888877766654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-09 Score=81.03 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=86.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcC-HHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADD-VLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~l~G~~~g~ 92 (157)
.+.++.+. ........+...++.++.|+++||+|||+.+..+.+...++...... ..+ ...+.+..++.+++.+.
T Consensus 281 ~g~s~~~~-~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 281 LGLPRELF-LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 45666655 55555666677888899999999999999988776655444332222 222 33444456667888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSV-NMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+....++.|.+|++.|++..+.. +.+..++..+++.+.+.+.+
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~ 405 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT 405 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999998888864 44455778888888877755
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=83.93 Aligned_cols=121 Identities=7% Similarity=-0.072 Sum_probs=89.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
+.+.++.+. +...+...++..++.++.|+++||+|||+.+..+..+..+..+..... .+.+...+..++.+......
T Consensus 305 ~~g~~~~~~-g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (496)
T PRK03893 305 DLGYDPHTV-ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI 383 (496)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence 467888999 999999999999999999999999999999887766655544433322 22333334444444433334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.+++|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 56677899999999999999998877777777788777666554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-09 Score=81.27 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=87.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchh-hhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTT-LQVASIPFFFGWLLMAFA---DDVLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G 87 (157)
.+.+..+. +.. +...... +..+++++++||+ |||+. +..+.+...++....++. ++++.+.+.+++.+
T Consensus 42 ~g~~~~~i-g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~ 118 (491)
T PRK11010 42 ENIDLKTI-GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIA 118 (491)
T ss_pred CCCCHHHH-HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 45677777 665 2222222 6899999999999 99886 556666666666666664 46778888999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
++.+.......++..|++|+++|++..+....+..+|..+++.+..
T Consensus 119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~ 164 (491)
T PRK11010 119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL 164 (491)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999989999999999999999999998888877777666654433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=83.52 Aligned_cols=120 Identities=17% Similarity=0.045 Sum_probs=104.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..+.++... +++.+...+|..+|+++.+.+.+|+++++.+..+.+..+++.+..++.++.+..++..++.|++.....
T Consensus 247 ~~l~~~a~~y-Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~ 325 (524)
T PF05977_consen 247 DVLGGGASGY-GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN 325 (524)
T ss_pred HHhCCcHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888 999999999999999999999999999999888888888888888999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
....+.+++..|++.||+..+.+......+..+|.++.+.+
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777665666665554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-09 Score=78.34 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCcccccHHHHHHHHHHHHHH-HHHHHHHhHHHHHhHhccchhhh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVI-SNPLGALLSGTIMEVWGRKTTLQ-VASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~g~l~d~~grk~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
.++++.++.+. ++..+...+ +..++.+..++ .||+|||+.++ .+.+...++..+..++++++.+++.+.+.+...+
T Consensus 43 ~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (393)
T PRK15011 43 TDEVHARPAMV-GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS 120 (393)
T ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34578899999 998766544 66666666666 99999998754 4455555666667778888887666555554455
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy69 92 KSELNHQLFMTALVVILMAS--LSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~--~~~~~~~~~~~~~~~~~~~~ 131 (157)
...+....+..|..+++.|. ...+..+.+..+|..+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i 162 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL 162 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence 56677777778877665442 22345554555554444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=78.29 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=85.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhh-hhHHHHHH---HHHHHH----hcCHHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQV-ASIPFFFG---WLLMAF----ADDVLQLCIGRFITG 87 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~-~~~~~~~~---~~~~~~----~~~~~~~~~~~~l~G 87 (157)
..+.++.+. ++..+...++..++.++.+++.||++||+.... .......+ ..+... .++.+.......+.+
T Consensus 245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (399)
T TIGR00893 245 ERGLSILEA-GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF 323 (399)
T ss_pred HhcccHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 356788888 888999999999999999999999999962111 11111111 111111 123333333334444
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.+.+ ..+....+++|.+|+++|++..+..+....++..+++.+.+.+.+..
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 324 FGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred hchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 4444 67888999999999999999999999999999999999988887643
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-09 Score=78.15 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=93.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+...++..++++..|++.||+|+|+.+..+.....++..... + ........++.|++.....+.
T Consensus 230 ~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~ 305 (381)
T PRK03633 230 QGMSDASI-GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPV 305 (381)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHH
Confidence 46788888 8888899999999999999999999999988877777666554332 2 223344667778777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
...++.|..|+++++...+..+...++|..+++.+.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~ 347 (381)
T PRK03633 306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN 347 (381)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999988887777777788888999999988887653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9e-09 Score=78.21 Aligned_cols=119 Identities=16% Similarity=0.035 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
..+.++.+. +...+...++..+++++.+++.||++||+... +......+.. .....++.+.+.++.++.|++.+...
T Consensus 235 ~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~ 312 (390)
T PRK03545 235 VAGLSENFA-TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIG 312 (390)
T ss_pred hcCCCccHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcch
Confidence 356788888 88888899999999999999999999886543 3333333333 33445667777778888899887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.....++.|..| +.|++..+..+....+|..+|+.+.+.+.+
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888866 578888888888888889999888888765
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-09 Score=80.20 Aligned_cols=112 Identities=20% Similarity=0.076 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+.+.+...++..++.+..|++.||+|||+.+..+.....++.+...+.++.+.+.+.+++.|++.+...+....++.+..
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 45555667788888999999999999999998888777777666666778888888999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 106 VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 106 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|++.|++..+..+....++..+++.+.+.+.+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred CcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999999998888888888888888777654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-09 Score=79.45 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=66.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhc-----CHHHHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFAD-----DVLQLCIGRFITG 87 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~l~G 87 (157)
+++.++.+. ++..+...+...+++++.|+++||+|||+.++.+.....+..... .+.+ .....++.+++.|
T Consensus 32 ~~g~s~~~~-g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (396)
T TIGR00882 32 VNGLSKTDT-GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLG 110 (396)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467899999 999999999999999999999999999999987666554433221 1111 1233455678888
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p 106 (157)
++.+...+....+..|..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~ 129 (396)
T TIGR00882 111 FVFSAGAGAIEAYIEKVSR 129 (396)
T ss_pred HHhccchhhHHHHHHHhhh
Confidence 8887777777777666543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=79.70 Aligned_cols=122 Identities=15% Similarity=0.006 Sum_probs=98.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhhhh--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQVA--SIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.++.+. +...+...++..+++++.+++.||. ++|+...+. .+...++.++....++++.+.+.+++.|++.+.
T Consensus 271 ~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~ 349 (455)
T TIGR00892 271 KGVDEYEA-AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS 349 (455)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence 57788888 9999999999999999999999973 334333332 233334444455677888888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
..+.....+.|.+|++++++..+..+....++..+++.+.+.+.+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 88999999999999999999999999999999999999988876643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.1e-09 Score=79.35 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=94.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+++++.+. +...+.+.++..++.+..++++||++||+.+........+...+....++.....+..++.|++.+..++
T Consensus 235 ~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 313 (394)
T PRK03699 235 KFGMSLEDA-GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYT 313 (394)
T ss_pred HcCCChHHh-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 467888888 9999999999999999999999999999988877766666555555666776667777888988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+..|..|.+ +++..+.......+|..+++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 314 TIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7777878877543 4556666666677888888888877765
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.2e-09 Score=78.03 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----------cCHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGV-ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----------DDVLQLCIGRF 84 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 84 (157)
.+.++.+. +.+..... ++..++.++++++.||+|||+.+..+.++..+...+..+. ++.+.+..+.+
T Consensus 239 ~g~~~~~~-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
T TIGR00901 239 MGFSKEEI-ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTIT 317 (356)
T ss_pred cCCCHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHH
Confidence 67788888 87776655 5778999999999999999999888887777665544432 34566677888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSI 121 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~ 121 (157)
+.+++.+...+...++++|.+|+|+|++..+..+...
T Consensus 318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 8999999999999999999999999999998776544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=76.69 Aligned_cols=121 Identities=16% Similarity=0.107 Sum_probs=99.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...+...++..+...+.+++.||+|+|+.+..+.....+........++.+.+++..++.|++.+...+
T Consensus 234 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 234 AAGYSASTI-GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HCCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 357788888 8888888888899999999999999999999988888888777777788888888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccC
Q psy69 96 NHQLFMTALVVILMASLSAHSVN-MSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (157)
....+..+. +++++++..+..+ ...+.|..+++.+.+.+.+.
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887 4555677777665 55567778888888877653
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=80.84 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH-HH-HH--hcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL-LM-AF--ADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~l~G~~~g~ 92 (157)
.++++.+. ++......++..+++++.|+++||+|||+.+..+.....+... .. .. .++.....+...+.+++.+.
T Consensus 269 ~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 347 (434)
T PRK15075 269 LHLSAADS-LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGS 347 (434)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 56788888 8888888899999999999999999999987765544332221 11 11 22333444445556677776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccC
Q psy69 93 SELNHQLFMTALVVILMASLSAHSV-NMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 138 (157)
..+....++.|.+|++.|++..+.. +.+..++..+++.+.+.+.+.
T Consensus 348 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 348 YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6666778899999999999988864 434444466677777666553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=80.10 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhhhhh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~ 93 (157)
-|+... ++++....+-.++.+++.|.++||+.||++++.+.+...+......+. .+.+.+++.-++.|++....
T Consensus 42 ~S~~~v-alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 42 GSPLMV-ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 466777 888999999999999999999999999999999988876655443321 36788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+...+.+.|.+|+++...+++......++...+|+.+
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999999998888887777666554444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=76.66 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hhhhhH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV--AIGKSE 94 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~g~~~ 94 (157)
.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.+...+........++.......-.+.|+ ...+..
T Consensus 261 ~g~~~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (426)
T PRK12307 261 EGFDTGVV-SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG 339 (426)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence 46777888 888888899999999999999999999998888776665554443332221112222233333 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+.++.|.+|++.|++..+.......++..+++.+.+.+.
T Consensus 340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 556788899999999999999877777777777777665554
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=78.56 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=107.5
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc--hhhhhhhHHHHHHHHHHHH--------hcCHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK--TTLQVASIPFFFGWLLMAF--------ADDVLQLCIGRF 84 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 84 (157)
++.+++..+. ..+.....+..++|+++.|++.||+|.| ++++.+.+...+..+...+ .++.+.+++.-+
T Consensus 310 ~~lg~s~~~l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 310 EVLGMSTTQL-IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HhcCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 4578898888 8888889999999999999999999999 8888877777666555555 567788899999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+.|+..|..++...++.+|+.|+++.+...+.+.+.--....+||++.+.+...+
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888889988888776544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-08 Score=74.51 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=91.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++++..|++.||+ +||+.+..+.....++.....+.++.... ....+.|++.+..++
T Consensus 227 ~g~~~~~~-g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 227 HGASAATA-GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFP 304 (355)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhH
Confidence 47788888 9999999999999999999999999 46666666666666666555554433222 245678999988887
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcc
Q psy69 96 NHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSH 141 (157)
Q Consensus 96 ~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (157)
.....+.+.. ++++++...+..+....++..+++.+.+.+.+..+.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7767666554 466778888877777777788888888888765544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=77.60 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=96.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~g~ 92 (157)
..+.++.+. ++......++..++.++.+++.||+|||+.+..+.....+...+..+. ++.+...+..++.|++.+.
T Consensus 291 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 369 (471)
T PRK10504 291 GLGFSPFHA-GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNST 369 (471)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 356788888 888888888888888999999999999999988888777776655543 2333344566778888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+.......+.+|+|.++...+..+....+|..+|+.+.+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 370 RFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999988888888888877766554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-09 Score=80.28 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccchhhhhh-hHHHHHHHHHHHHhcCHH-------------
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRKTTLQVA-SIPFFFGWLLMAFADDVL------------- 77 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk~~~~~~-~~~~~~~~~~~~~~~~~~------------- 77 (157)
..++++.+. +.+.....+...+.+++.|+++| |+|||+.++.. .....++..+..++++..
T Consensus 33 ~lg~~~~~~-~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 33 ELGIPHAWA-SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 367888999 99999999999999999999999 59999998775 455555555666655432
Q ss_pred ----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhh
Q psy69 78 ----QLCIGRFITGVAIGKSELNHQLFMTALVVILMA--SLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 78 ----~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+++..+..++....+....+++.|.+|+++| +.+.++.+...++|..++..+..
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334455567777888899999999998865 46777777777777777766554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.1e-09 Score=82.18 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
.|+.+...++..++.++.|.++|.+|||..++.+.++..++.++++.++|...++++..+.|++.|... .....++|..
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~ 159 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELV 159 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhc
Confidence 688888999999999999999999999999999999999999999999999999999999999987765 4456689999
Q ss_pred HHHHHHHHHH
Q psy69 106 VILMASLSAH 115 (157)
Q Consensus 106 p~~~r~~~~~ 115 (157)
|.+.|.....
T Consensus 160 p~k~R~~~~~ 169 (599)
T PF06609_consen 160 PNKWRGLGLA 169 (599)
T ss_pred ccchhhhHhH
Confidence 9998876554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=77.15 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=77.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc----hhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK----TTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. ++..+.+.++..+++++.|++.||+||| +.+.+.... .........++++.+++.|++.|++.+.
T Consensus 34 ~g~s~~~i-G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~l~g~~~~~ 110 (382)
T PRK11128 34 QGYTPETI-GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLLFVAIGLFNLFFSP 110 (382)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHcc
Confidence 67899999 9999999999999999999999999994 332222111 1122233357888888999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+...++..++. ++|++..+.......+|..+++.+..
T Consensus 111 ~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg 149 (382)
T PRK11128 111 LVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTG 149 (382)
T ss_pred cccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHH
Confidence 8887777777663 44555544444444555555544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=76.48 Aligned_cols=117 Identities=9% Similarity=-0.079 Sum_probs=85.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH-HHHHHH-HHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI-PFFFGW-LLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+.+.+..+. +++.+.+.+...+++++.+.++||+||++....... ...+.. .....+++++.+++.|.+.|.+.+..
T Consensus 33 ~~g~s~~~i-g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 111 (382)
T TIGR00902 33 GIGLGEEMI-GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAG 111 (382)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccc
Confidence 468899999 999999999999999999999999998543322111 111122 23345678999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.+....+..|. .++|++..+......++|..+++.+...+
T Consensus 112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l 151 (382)
T TIGR00902 112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL 151 (382)
T ss_pred hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 88877777654 46677777777777777777766554333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.5e-09 Score=78.89 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=86.9
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhh-hhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy69 8 LPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTL-QVASIPFFFGWLLMAFADDVLQLCIGRFIT 86 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (157)
.|.+..+...+.++.+. +.......++..++.+..|+++||++||+.. ........++..+....++......+-.+.
T Consensus 265 ~p~~l~~~~~~~s~~~~-~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (412)
T TIGR02332 265 TPQILQSFNQGSSNIMI-GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMA 343 (412)
T ss_pred HHHHHHhcCCCCcHHHh-HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444332345677788 8888999999999999999999999977743 333333333322222222322222222223
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
+++.....+.......|.+|++.|++..+..+....++..+++.+.+.+.+..+.|
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~ 399 (412)
T TIGR02332 344 SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF 399 (412)
T ss_pred HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence 33333323334455567899999999999999999999999999998887765544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=78.52 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=108.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
++|++..+. ..+.....+..++++++.|++.||+|.|+++..+.++..+.++...+......++++..+.|...|+.++
T Consensus 282 ~~gls~~~l-ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 282 DLGLSSTEL-LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 578899999 8999999999999999999999999999999999999988888877777777778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
...+|..+.+|+++-++..+.+++.-.....+++.....+.+-+
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999998999888888777888877776665433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-08 Score=75.00 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
++.+. +.......++..++.++.++++||+|+|+.+..+..+.+++.....+. ++.+...+..++.|++.+..++...
T Consensus 255 ~~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELF-SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 677777889999999999999999999999998888877776666554 3556667778889999999899999
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 99 LFMTALVV-------ILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 99 ~~~~~~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++++|..+ ++.++...+..+....++..+++.+.+.+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 3456888888888888899999888777754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=76.06 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=94.5
Q ss_pred Cccccc-HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhh
Q psy69 15 DRRIIY-KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 15 ~~~~~~-~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~ 90 (157)
+.++.+ ..+. +...+...++..++.++.+++.||+++|+..........+....... .++....+...++.|++.
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 313 (352)
T PF07690_consen 235 EVLGFSGPSQA-GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF 313 (352)
T ss_dssp HHHHCCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 446677 7888 88899999999999999999999999988777766666665555443 335566777888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
+...+....++.|.+|+++|++..+..+...+++..++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999998888888775
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-08 Score=74.47 Aligned_cols=120 Identities=9% Similarity=-0.006 Sum_probs=88.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhh-hhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQ-VASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~ 90 (157)
.+.++.+. +...+...++..++++..|+++||+|||+... .+.+...+....... .++.+...++.++.|++.
T Consensus 252 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 330 (402)
T TIGR00897 252 LGFSTSEW-LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFL 330 (402)
T ss_pred cCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 57788888 88888889999999999999999999988754 223333333222221 235666677888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+...+ ......|. ++++|++..+..+....++..+++.+.+.+.++.
T Consensus 331 ~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 331 AGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77544 44556665 4568999999999999999999999988887643
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-09 Score=79.48 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccch-hhhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKT-TLQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+.++..+...+..++.|+++|| +|||| .++.+....+++..+....++ ..+..+.+
T Consensus 28 ~~~g~s~~~~-g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 28 DVLGLSAAFV-GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred HccCCCHHHH-HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 4578999999 999999999999999999999998 67755 566676777777666655443 34566678
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
++.+++.+.......++..|.. ++++|++..+..+....+|..++
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~ 152 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLV 152 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777788888887 47889888887776665554443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=77.37 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDV--LQLCIGRFITGVAIGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~ 108 (157)
...+...++.++.+++.||+|||+.+..+.++.+++.++..+.++. +...+..++.+++.+..+.....+.+|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3445566788899999999999999999888888887777665543 44555566677777777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 109 MASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 109 ~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
.|++..+..+....+|..+++.+..
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999999888888888888877655
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-08 Score=76.90 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=70.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++.|++..+. +++.+...++..+++++.|.++||+|| |+.+..+.+...+......+.++++.+.+.|++.|++.+..
T Consensus 31 ~~~g~s~~~i-Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 31 KTLHFSGAEI-GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 3478899999 999999999999999999999999965 77777777777777777778888999999999999977665
Q ss_pred HHHHHHH
Q psy69 94 ELNHQLF 100 (157)
Q Consensus 94 ~~~~~~~ 100 (157)
.+...+.
T Consensus 110 ~~~~~~l 116 (418)
T TIGR00889 110 IALTNSI 116 (418)
T ss_pred HHHHHHH
Confidence 5554444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=73.80 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=94.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~ 90 (157)
+.+.++.+. ++......++..++.++.+++.||+++|+.+..+.+...++..+.... .+.+++.+..++.|++.
T Consensus 245 ~~g~~~~~~-g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 323 (406)
T PRK15402 245 GEQLSSYEY-GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI 323 (406)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 356788888 888777778889999999999999999999888877766666555432 24566677888899988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
+...+........ .++++|++..+..+.....+..+|+.+...+.+..+
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 324 GLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 8776666555543 345889999999999888888899888877765433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=76.48 Aligned_cols=120 Identities=6% Similarity=0.023 Sum_probs=86.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH---h--cC-----HHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF---A--DD-----VLQLCIGRFIT 86 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~---~--~~-----~~~~~~~~~l~ 86 (157)
.+.+..+. +.......++..++.++.++++||+|||+.+..+..+..++..+..+ . ++ ....+....+.
T Consensus 314 ~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (481)
T TIGR00879 314 AGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF 392 (481)
T ss_pred cCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 45666677 77888888899999999999999999999988887777766655542 1 11 22222222222
Q ss_pred Hhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 87 GVAIG-KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 87 G~~~g-~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+.+.+ ...+....++.|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 393 IAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred HHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2335566778999999999999999999888888888887776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=76.50 Aligned_cols=118 Identities=9% Similarity=0.063 Sum_probs=82.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--cCH--HHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--DDV--LQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. .+......+...++.++.+++.||+|||+.++.+.+..+++.++.... .+. .....+.++.+.+.+.
T Consensus 301 ~g~~~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (479)
T PRK10077 301 LGASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 379 (479)
T ss_pred cCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 34554455 555666777888999999999999999999999998888877665432 121 1222333444444433
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 93 S-ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 93 ~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
. .+....+++|.+|+++|++..+..+....++..+++.+.|.+
T Consensus 380 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 380 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred cccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2 356789999999999999999988777777776665555533
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-08 Score=73.33 Aligned_cols=120 Identities=16% Similarity=0.058 Sum_probs=90.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++.+. +...+...++..++.+..+++.||++||+....+..+..++..+....+ +.... ...+.|++.+...+
T Consensus 235 ~g~s~~~a-g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~ 311 (393)
T PRK09705 235 IGASAQYS-GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFP 311 (393)
T ss_pred cCCChhhh-hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHH
Confidence 57888888 9999999999999999999999999999998888777666655444323 22222 23456777777777
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 96 NHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 96 ~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.......+..+ ++++++..+..+....++..+++.+.+++.+..
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77667677774 678999998888877777888888777776543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=85.25 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=95.9
Q ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQ-QVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~-~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.+.. +. +++.+...++.++++++.+++.||+++++.+.++.+..+++.++..+..+.+..+++.++.|++.+...+
T Consensus 263 ~g~s~~~~~-g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 263 LGLDNTFQV-QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred hCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 567777 88 8999999999999999999999999999988888887777777777777888888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
...+++.+.+|++.|++..+..+....++..+++.+
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~ 377 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLAL 377 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887777666555444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.7e-08 Score=74.57 Aligned_cols=50 Identities=16% Similarity=-0.036 Sum_probs=43.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFG 66 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~ 66 (157)
++|+++.+. +.+.+...++..+++++.|+++||+|||+.++++.....+.
T Consensus 40 ~~g~s~~~~-g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 40 INGLSGTDT-GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 478899999 99999999999999999999999999999987765554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.1e-08 Score=74.41 Aligned_cols=116 Identities=7% Similarity=-0.067 Sum_probs=73.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH--H--hcCHHHHHHHHHHHHhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA--F--ADDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~G~~~g~ 92 (157)
.+.+..+. +...+...++..++.++.|+++||+|||+.+........+...... . ..+....+..-.+.++..+.
T Consensus 274 ~g~s~~~~-~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T PRK10406 274 AGMHANVA-SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSF 352 (432)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 56777788 8888887788888899999999999999987766554333322111 1 12232222222222233334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIG-MCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~ 133 (157)
.......+.+|.+|++.|++..+..+.... +.....+.+..
T Consensus 353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~ 394 (432)
T PRK10406 353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL 394 (432)
T ss_pred HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence 445567889999999999999997665433 32334444444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=74.99 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=94.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.+..+. +...+...+...++.+..+++.||+|||+.+.++..+.++...+....++.+.+.+.+++.|++........
T Consensus 250 ~~~~~~~-g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 250 QQGTRVF-GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGC 328 (396)
T ss_pred ccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566 777888888888899999999999999999998888888877776777888888888999998877766666
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccc
Q psy69 98 QLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+..+..|++.+++..+. .+....+|..+++.+.+++.+
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6677777777777665554 566778888888888777765
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-08 Score=71.43 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=106.3
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
+++.+++.+.. +.++++..+...+.+++..++++|+|.++.+..+.++.+++..+-... +.+.++.+-.+.|.+.+..
T Consensus 39 r~~~gls~s~a-GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~ 116 (395)
T COG2807 39 RQDLGLSFSVA-GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVI 116 (395)
T ss_pred HHHhcccHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHH
Confidence 35588999999 999999999999999999999999999999999999999998887765 7788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+...+.++.+.+|++.. ..++.+....+++.++++.+.+.+..+.
T Consensus 117 nVLLPslIK~~Fpk~~~-~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 117 NVLLPSLIKRDFPKRVG-LMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHhhhHHHHhhcccchh-hHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 99999999999987764 4777888888888888777666555433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-08 Score=72.01 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhh-HH-HHHHHHHHHH--hcCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVAS-IP-FFFGWLLMAF--ADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~l~G~~~ 90 (157)
..+.++.+. +...+...++..++.++.+++.||..+ |+...... .. ...+...... ..+.....+..++.|...
T Consensus 246 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 324 (379)
T TIGR00881 246 EKGFSKEKA-SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLV 324 (379)
T ss_pred HhCCCHHHH-HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 356788888 899999999999999999999998643 33222211 11 1111111112 224445556667777766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.........+.+|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 325 YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 66666677889999999999999999999999999999988888765
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=70.26 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-----DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~ 90 (157)
+.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.....++..+.... ++........++.|++.
T Consensus 236 ~~g~~~~~~-g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 314 (385)
T TIGR00710 236 IMGVSPSVF-GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGN 314 (385)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 466788888 999999999999999999999999999998888777766665554432 22334455677788888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAV 130 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~ 130 (157)
+...+....+..|..| +.+++..+..+..... +...++.
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 315 SMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876 5788888876655443 4444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-07 Score=69.99 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=91.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~ 93 (157)
.++.++... .+......++..++.++.+++.||+|+|+.+..+.++..++.+...+.+ +.+...+..++.|++.+..
T Consensus 258 ~~g~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 258 VLNDTGLFT-VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred ecCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 355555544 4444444677888999999999999999999999888777776666543 4566666788899999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+...+..+|..|.++ ++...+..+....+|.++++.+.+.+.
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988653 477777888888888888877766554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=72.15 Aligned_cols=119 Identities=16% Similarity=0.022 Sum_probs=91.6
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+..|.++.+. +...+...++..++++..+++.||.++|+.+..+. ...+......+.++++...+..++.|++.+...
T Consensus 234 ~~lg~s~~~~-G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~ 311 (393)
T PRK11195 234 VALGITLNQP-AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFV 311 (393)
T ss_pred HHcCCChhHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 3467888899 99999999999999999999999999888777664 333334444556667766777888999988888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILM-ASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+...+.++|..|+|. +++..+..+....++..++..+...+
T Consensus 312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888888888766655 78888888887777777776555433
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=78.28 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=95.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHH-HHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCI-GRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~~ 94 (157)
+++.+..+. +|+.++......+..++.+.+.||+|.|++.+.+.++..++.++..++++.+.+++ .-++.|+|.+..+
T Consensus 75 ~f~~s~~~~-~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~ 153 (509)
T KOG2504|consen 75 YFGSSSSQI-AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIY 153 (509)
T ss_pred HhCCCccHH-HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhh
Confidence 356677778 99999999999999999999999999999999999999999999999999988776 5788999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
......+..++ ++.|+.++++...+.++|..+-+.+
T Consensus 154 ~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 154 LPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred cchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH
Confidence 88888877555 6677888887777666554443333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=69.80 Aligned_cols=119 Identities=13% Similarity=-0.001 Sum_probs=88.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP-FFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+.++.+. +.......++..++.++.+++.||.+ |+.++..... ......+....++.+.+.+..++.|++.+...
T Consensus 246 ~~g~s~~~~-g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~ 323 (394)
T PRK10213 246 LAGFGVDGL-TLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVP 323 (394)
T ss_pred hcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 457888888 88899999999999999999999954 4443433333 33333444455667777778899999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+...+++++..|+ .+++..+.......++..+|+.+.+.+.+
T Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 324 VGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899998874 45556666666777888888888888765
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.8e-07 Score=70.47 Aligned_cols=122 Identities=10% Similarity=-0.032 Sum_probs=81.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhh-hhhhHHHHHHHHHHH--HhcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTL-QVASIPFFFGWLLMA--FADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~G~~ 89 (157)
++.+++..+. +...+...++..++.++.|+++||+. +|+.. ....+...+...... ...+.....+..+..|++
T Consensus 272 ~~~g~s~~~a-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 350 (434)
T PRK11663 272 ETLGVDLVTA-NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFF 350 (434)
T ss_pred hccCCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 3467888888 88999999999999999999999983 33322 221111111111111 122333333344445544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.............|.+|++.|++..+..+....+|..+++.+.+.+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~ 398 (434)
T PRK11663 351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE 398 (434)
T ss_pred HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 333333445677899999999999999999999999999888887765
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-07 Score=66.69 Aligned_cols=118 Identities=8% Similarity=-0.091 Sum_probs=89.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+++++.+. +...+.+..+..+|.++.+++.||+|+|+.+.++..+..++..+....++.. .....++.|++.+..++
T Consensus 172 ~~g~s~~~a-~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 172 ALGLPEDQA-AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFP 249 (310)
T ss_pred cCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHH
Confidence 467899999 9999999999999999999999999999988887777766665554444433 23456688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+...+..|++. +++.+.. ....+|..+.|.+.+.+.+
T Consensus 250 ~~~s~a~~~~~~~~-~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 250 TIFSLALNALGRHT-SQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHhhhhhhh-hhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 99999888887653 3444543 3344677777777777655
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=73.19 Aligned_cols=120 Identities=8% Similarity=-0.042 Sum_probs=91.1
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++..++++.+. +.....+.++..++++..+++.||+|||+++..+..+..+...+..+.++. ..+....+.|++.+..
T Consensus 287 ~~~~g~s~~~a-g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i 364 (438)
T PRK10133 287 EEIPGMTAGFA-ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQ 364 (438)
T ss_pred hhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHH
Confidence 45578999999 999999999999999999999999999999888776666555555554443 2345677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++...+...|..|++ .+.+.+...... ++..+++.+.+.+.+
T Consensus 365 ~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~ 406 (438)
T PRK10133 365 YPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSD 406 (438)
T ss_pred HHHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHH
Confidence 999999999988765 445555554333 456666666666644
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=73.37 Aligned_cols=107 Identities=11% Similarity=-0.017 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----DVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
...++..++.++.+++.||+|||+.++.+..+..++..+..+.. +...+...-+...+......+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 34456667889999999999999998888777666655544321 11111111111111112234456678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 107 ILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 107 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
++.|++..+..+....++..+++.+.+.+.+
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 9999999999998888888888888877754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-07 Score=67.48 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=75.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+++++++.|+ +.+.........+...+.|.++||+|||+.-+...++..++++ +-..+++..++++|++.|++....+
T Consensus 62 ~~yg~~~~qI-a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 62 ESYGFSEHQI-AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHH
Confidence 4578899999 9999999999999999999999999999998888888888885 4446889999999999999999999
Q ss_pred HHHHHHHH
Q psy69 95 LNHQLFMT 102 (157)
Q Consensus 95 ~~~~~~~~ 102 (157)
..-.+|..
T Consensus 140 S~FEsW~V 147 (354)
T PF05631_consen 140 SAFESWMV 147 (354)
T ss_pred HHHHHHHH
Confidence 88887654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-07 Score=59.55 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
++++..- ..-.++......+++++.+.+.+++|.|+.++++.+...+-.. ..+-++.+.++.+-++.|++.+..+...
T Consensus 33 ~i~~~~G-~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aq 110 (156)
T PF05978_consen 33 SISAGLG-YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQ 110 (156)
T ss_pred ccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhh
Confidence 3444333 3445666677788889999999999999999999888775443 3356678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
..++.+..+++.+++..+........+..+|.++.-.+
T Consensus 111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877777777777776665444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.9e-07 Score=69.39 Aligned_cols=120 Identities=12% Similarity=-0.032 Sum_probs=75.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhh-hhhHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQ-VASIPFFFGWLLMAF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g 91 (157)
.+++..+. +.......++..++.++.|+++||+ +||+... ....+..++...... ..+.....++.++.|....
T Consensus 284 ~g~s~~~~-~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 362 (452)
T PRK11273 284 KHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIY 362 (452)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 56777788 8888888899999999999999999 4454322 222222222222222 2244444445555555443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGF-SAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 137 (157)
........+..|.+|++.|++..+..+....++..+ ++.+.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~ 409 (452)
T PRK11273 363 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 409 (452)
T ss_pred hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 333334557789999999999999887766665443 5666555543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=71.47 Aligned_cols=118 Identities=7% Similarity=-0.087 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIME-VWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d-~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
++.+. ++..+...++........+...| |++.++.+..+..+..++..+..+.++.+.+.+...+.+++.+...+...
T Consensus 241 ~~~~~-g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 319 (400)
T PRK11646 241 SPSAV-KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE 319 (400)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence 55667 77777766666555555555555 56666666777777777776677777777777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
+++.|..|++.|++..+..+....++..+++.+.+.+.+.
T Consensus 320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999998888654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=80.54 Aligned_cols=120 Identities=13% Similarity=-0.021 Sum_probs=95.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--------------------cC
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--------------------DD 75 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--------------------~~ 75 (157)
.++.++.+. +++.+...++..++.+..|++.|+.++++.+..+.+...+..+...+. .+
T Consensus 255 ~~g~~~~~~-g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 255 TLGGDENVA-TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred HcCCchHHH-HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 357788888 999999999999999999999988877766555555544444333332 56
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 76 VLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 76 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.+++..++.|++.+.......+++++.+|++.|++..+..+....++..+++++...+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788889999999999999999999999999999999888888877777776655553
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=69.72 Aligned_cols=122 Identities=18% Similarity=0.110 Sum_probs=96.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhhhhhH-HHHHHHHHHHHhc--CHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQVASI-PFFFGWLLMAFAD--DVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~ 90 (157)
..|++..++ .+..+.+-++...|++++|+++||+ |||...-+... ...++....-.++ ++....++.++.|+..
T Consensus 282 ~k~~s~~~a-~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~I 360 (448)
T COG2271 282 VKGFSLVKA-NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI 360 (448)
T ss_pred hcCCCHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 567899999 9999999999999999999999994 66655443333 3333333333344 5688888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccC
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHRE 138 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 138 (157)
-+.+........|..|++-.|++.+..+....+ |..++....+.+.+.
T Consensus 361 yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 361 YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred hhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 888888889999999999999999999988877 788887777777554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.4e-07 Score=67.76 Aligned_cols=120 Identities=10% Similarity=-0.121 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH------hcCHHHHHHHHHHHHhh
Q psy69 17 RIIYKQQVLFVAASLGV-ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF------ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~G~~ 89 (157)
.+.++.+. +....... ....++.++.|++.||+|+|+.+..+............. .++....+....+.++.
T Consensus 238 ~G~s~~~i-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (390)
T TIGR02718 238 AGWPLEWI-GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI 316 (390)
T ss_pred cCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence 57899998 88877665 467788999999999999999988766554333222211 12333444445556666
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 90 IGKSELNHQLFMTALVVI-LMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+...+.......+..++ +.+++..+..+...+++..+++.+.+.+.+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777887788776 888999999998889999999998887765
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-08 Score=77.37 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=95.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++|++++ .-..+.+..-.-+..+++||++|| +|+|+++..+.+++.++.++.+.. .+...+.++.++.++|.|..
T Consensus 56 Lg~~~~~A-~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 56 LGFDETHA-TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred CCcChHhh-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 56888888 777777777777889999999999 799999999999999999998877 37888889999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 94 ELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
-+...+++.|.+|++. |-...+.++++.++|..+++.+.+++.
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 9999999999999774 333344555555666666555555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=68.35 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=84.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA-FADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.|.++.+. +...+...++..++.++.+++.||+|+|+.+..+..+..++..+.. ..++.+...+..++.+.+.....+
T Consensus 230 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 308 (382)
T PRK10091 230 SGFSETSM-TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSA 308 (382)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhH
Confidence 57788888 9999999999999999999999999999998888877777665544 344555555566666666554443
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 96 NHQ-LFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~-~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
... ....+..|++.++... .+....+|..+|+.+.+.+.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc
Confidence 333 3344444555555443 3456678888888888777653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.2e-07 Score=70.16 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=77.5
Q ss_pred cccccHHHHHHHHHH-HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHh-cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAAS-LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFA-DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~G~~~ 90 (157)
+.|+++.+. +.... ...++..++.++.|+++||+|+|+.+....+...+..... ... ++...+....++..+..
T Consensus 252 ~~G~s~~~~-g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 252 GVGFDAGEV-GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 467899999 88874 5668999999999999999999887776555444433222 222 34444444555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+.......++..+..+++.+++..+..+....++..+++.+
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~ 371 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV 371 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667888888888877777776666656554444333
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=71.80 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHH-HHh---c-CHHHHHHHHHHHHhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLM-AFA---D-DVLQLCIGRFITGVAI 90 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~l~G~~~ 90 (157)
.+-+.+.. |++.++..++..++++..|+...|.++ |+.++.+.++..+++.+. ... + ..+.++++|++.|+|.
T Consensus 66 ~~A~~~ff-G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 66 PTATATFF-GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCcchh-hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 45666777 999999999999999999999999886 778888899999998876 332 3 5678889999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+. ....-.|+++....+.|.++......+..++..+|+.+.+.+.+
T Consensus 145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 76 67888999998888888888888888777788888877776665
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-07 Score=70.57 Aligned_cols=115 Identities=12% Similarity=0.018 Sum_probs=84.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchh-hhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTT-LQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+.++.-+...+..++.|+++|| +||||. ++++.+..+++..+....++ ..+.++..
T Consensus 38 ~~~gls~~~~-g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 38 DVFGLSAAIM-GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 5578999999 999999999999999999999999 777555 45565666666554443332 34555666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAV 130 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~ 130 (157)
.+.+.+.........++..|+. ++++|.+..+.......+|..+++.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~ 164 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV 164 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888999988 5677887777666666655555543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=61.37 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC--HHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD--VLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
.+. ++..+...++..++.++.|.+.||+|||+.+..+......+.....+..+ ...+.+.|...|++.+...+....
T Consensus 39 ~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 117 (338)
T COG0477 39 LLY-GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASA 117 (338)
T ss_pred HHH-HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 356 78888899999999999999999999998877777655555556666655 788888999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHhhhcc
Q psy69 100 FMTALVVI-LMASLSAHSVNM-SIGMCQGFSAVLLPQL 135 (157)
Q Consensus 100 ~~~~~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (157)
++.|..|+ +.|+...+.... ...++..+++.+...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 667777776655 4555666665444433
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.5e-07 Score=69.73 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=111.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
..++++.+. +...++..+...++.+..|+++|+.. ++....++.+..+++.....+.++++.++..-.+.|+..|..
T Consensus 327 ~~g~~~~~a-a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~ 405 (509)
T KOG2504|consen 327 SLGLSSNDA-AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSF 405 (509)
T ss_pred hcCCChhhh-HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 467899999 99999999999999999999999977 344556666777777777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHIL 143 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (157)
.......+.|+.+.+.-..+.+......+++..+|+.+.+.+.+.+..|.
T Consensus 406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 99998999999999999999999999999999999998888877666553
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=69.89 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
... +.......++..++.++.++++||+|+|+.+..+..+.+++.++..+.+ +.+..++..++.|++.+..+....+
T Consensus 260 ~~~-~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 260 GLI-SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 445 6777788899999999999999999999999999999999988877765 8899999999999999999999999
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 100 FMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 100 ~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+++|..+.++ .|...+..+....++.+++..+.+.+.
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999988553 355566677777777888877766554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-07 Score=69.76 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=91.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhhHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.+.++... +.+.....+......+..|.+.||+++|+.+..+..+..++.....+. ++.+.+.+...+.|++.+...+
T Consensus 239 ~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 239 SDFAEKVV-AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred cchHHHHH-HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566 667777766666777888999999999999888887777776666554 4666667788899999888778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
....++.+..|++.|++..+..+ ...+|..+|+.+.+.+.+.
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88889999999999988876544 3446777887777776653
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=66.36 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=92.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~ 93 (157)
+..++++... +++...+.++..+|+.+.|+++|| +.|+.+.....+.++......+. .+.+..++.-++.|+.....
T Consensus 240 ~v~g~s~~~v-s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~ 317 (394)
T COG2814 240 SVAGFSVSAV-SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA 317 (394)
T ss_pred HccCCCHhHH-HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhh
Confidence 3467788899 999999999999999999999999 88888888877777777766654 45555566667777777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
........++ ..++.+....+.+...+++|...|..+.+...+
T Consensus 318 ~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~ 360 (394)
T COG2814 318 LQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360 (394)
T ss_pred hhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555 336777778888888888888888887776655
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=62.69 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-------DDVLQLCIGRFIT 86 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 86 (157)
++..|+|+.|. ..+.+...+|..+ .++.|.+.|++|.+.++.++.+...++....... .+++.+.+..++.
T Consensus 29 k~~l~~sq~~l-~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~ 106 (250)
T PF06813_consen 29 KSRLGYSQSQL-NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLG 106 (250)
T ss_pred HHHhCCCHHHH-HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHH
Confidence 35688999999 9999999999987 4888999999999999999999988888765542 2566777777788
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMC 124 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~ 124 (157)
|.+....+.....-..+.+| ++||++.+..-...+++
T Consensus 107 ~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLS 143 (250)
T PF06813_consen 107 GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLS 143 (250)
T ss_pred cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhH
Confidence 77776666666666668887 57888877655555543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-06 Score=63.73 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=76.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH-hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF-ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~G~~~g 91 (157)
..+.++.+. +.......++..++.++.+++.||+|||+.+..+.....+..... .. ..+.+...++..+.+.+.+
T Consensus 224 ~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T PRK11102 224 LNGVSPQNF-GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS 302 (377)
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 357788889 999999999999999999999999999999888776544433222 11 2244444444444454455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNM-SIGMCQGFSAVL 131 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~-~~~~~~~~~~~~ 131 (157)
........++.|..| +.+++..+..+. ..+++..+++.+
T Consensus 303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 303 MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 545555566777766 778877775544 334555555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=70.85 Aligned_cols=114 Identities=8% Similarity=-0.082 Sum_probs=71.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccch-------hhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKT-------TLQVASIPFFFGWLLMAFADDVLQLCIGRFITGV 88 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 88 (157)
+.++++.+. +...+...++..++.++.|+++||++||+ .......+..+...+....++.+...+..++.++
T Consensus 282 ~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~ 360 (476)
T PLN00028 282 RFGLSLETA-GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI 360 (476)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 367888888 99999999999999999999999998762 2222222222222333334455555555566666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
+.+........++.+..| +.++...+..+....+|..+++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 361 FVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred HHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHH
Confidence 655555555566666544 577777776655554444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-06 Score=65.08 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhhhhHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+... +...+...++.+++.++.+++.||+|+|+.+..+..+.+++.+...+ ..+.+.+++.-++.|++.+....
T Consensus 265 ~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 265 ADLF-PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455 66666666888899999999999999999998877766655544332 23455666677888999999999
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...++++|..+.++ .+...+......-++.++++.+.+.+..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987431 2334556666666777777777666543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-06 Score=64.13 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=83.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HH--hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +.......++..++....+++.||+++|+..........++.... .. .++....++...+.|++.+
T Consensus 233 ~g~s~~~~-g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (401)
T PRK11043 233 MGYSPADI-GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANG 311 (401)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 57888888 887777888889999999999999999987655544443333221 12 2345555566677888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..++.......|..| +++++..+..+.....+...++.+.+.+.+
T Consensus 312 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 312 AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 888887777777765 578999998887655555556555555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-06 Score=65.23 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-cCHHHHHH----HHHHHHhhhhhh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-DDVLQLCI----GRFITGVAIGKS 93 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~G~~~g~~ 93 (157)
.+.... +...+...+.-++.-...+++..|+|.|++++++.+..++=..+.+.. ++.+...+ ...+.|+..+..
T Consensus 240 ~~~~~~-g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~ 318 (400)
T PF03825_consen 240 YSGSTI-GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLF 318 (400)
T ss_pred chhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHH
Confidence 344555 556666667777788899999999999999999999999998888876 45443332 345699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccC
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNM-SIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 138 (157)
+.....|+.|.+|++.|++.++.++. ..++|..+|..+.+++.+.
T Consensus 319 ~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 319 HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997665 5789999999999888763
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=67.42 Aligned_cols=120 Identities=12% Similarity=-0.051 Sum_probs=75.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHH---HHHHHHHHh--cCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFF---FGWLLMAFA--DDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. ++......++..++.+..|+++||+++++....+..... ++....... .+.+......++.|.+..
T Consensus 282 ~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 360 (438)
T TIGR00712 282 KHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY 360 (438)
T ss_pred cCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence 56788888 888888999999999999999999975432222222211 111111111 233333344455555433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMC-QGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 137 (157)
...........|.+|++.|++..+..+.....+ ..+++.+.+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 322233456789999999999999887766654 4567777776654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=65.07 Aligned_cols=123 Identities=13% Similarity=-0.016 Sum_probs=77.4
Q ss_pred CccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc---hhhhh-hhHHHHHHHHHHHHhcCHHHHHHH
Q psy69 7 PLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK---TTLQV-ASIPFFFGWLLMAFADDVLQLCIG 82 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (157)
.+|.+.++ .+++.. . +...+...+...++ .++++||..|| +.... .....++...+..+..+.....+.
T Consensus 214 wlp~~L~~--~g~s~~-~-~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 214 WLEAALRP--AGLEDI-A-GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHHH--CCCChH-H-HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 34555433 345543 4 55555544444444 47788877654 33222 233333333333444444444555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 83 RFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
-.+.+++....++....+.+|.+|++.|++..+..+....++...++.+.+.+.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 666777777777778899999999999999999999988888878877776554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-07 Score=67.43 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=74.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh--c--CHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA--D--DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~G~~~g 91 (157)
.++.++.+. +...+...+...++.++.|++.||+|||+....+......+..+..+. . +.+...+...+.++..+
T Consensus 255 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (366)
T TIGR00886 255 QFGLSKVTA-GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG 333 (366)
T ss_pred HcCCcHHHH-HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 467788888 888888889999999999999999999988777766655555444332 2 44444445555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIG 122 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~ 122 (157)
.........+.|..| +++++..+..+....
T Consensus 334 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 334 AGNGSTFALVPHIFR-RATGAVSGLVGAIGN 363 (366)
T ss_pred cccchhhhcchhhch-hhcccHHHHHHHhcc
Confidence 555666677788876 577777776665443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=68.31 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=81.7
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccc-hhhhhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRK-TTLQVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++.+. +.+..+.-+...+..++.|.++| |+||| +.++++....+++..+....++ +.++++..
T Consensus 35 ~v~Gls~~~v-g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 35 DVVGLSVGLV-GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4468899999 99999999999999999999999 56985 4555666666666554433221 33455566
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy69 84 FITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMC 124 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~ 124 (157)
.+.+++.........++..|+. ++++|.+..+.......++
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig 155 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLA 155 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 7778888888888899999998 5889998887765555544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-06 Score=63.69 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF--ADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
+.......+...++.+++++++||+|+|+.+..+.+...+......+ .++.+.+.+..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777888999999999999999988877665544333222 2456667778889999999999999999999
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 104 LVVILM-------ASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 104 ~~p~~~-------r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
..+.++ .+...+.......+|.++++.+.+.+..
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987332 2334456666667777887777666553
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-07 Score=70.99 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred HHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy69 34 ISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL----QLCIGRFITGVAIGKSELNHQLFMTALVVILM 109 (157)
Q Consensus 34 ~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~ 109 (157)
+.-+-|.++.+++.||+|||+++....+++.++.++...+.+.. +++.+|+.. .+.+.+.+.|..|.+|...
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhh
Confidence 44567889999999999999999999999988887776654433 233455554 4455667799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy69 110 ASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 110 r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
|++..+.-...-.+|..+.+++.
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH
Confidence 99988877777777777777665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=64.49 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=71.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.+.++.+. +...+...++..++.++.+++.||+|||+.+..+.....++.....+.++.+..+....+.+.+.+....
T Consensus 233 ~~g~~~~~~-~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 311 (392)
T PRK10473 233 QMGFSRGEY-AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFG 311 (392)
T ss_pred HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788888 8888889999999999999999999999999888888777777666655544444444444444443332
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy69 96 NHQLFMTALVVILMA-SLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r-~~~~~~~~~~~~~~~~~~ 128 (157)
. .+..+..|.+.| +...+.......++..++
T Consensus 312 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 343 (392)
T PRK10473 312 V--AMSQALGPFSLRAGVASSTLGIAQVCGSSLW 343 (392)
T ss_pred H--HHHHHhccCcccccHHHHHHHHHHHHHHHHH
Confidence 2 344555564444 333334443333343333
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=65.90 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=76.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh---cC-H--H---HHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA---DD-V--L---QLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~---~~-~--~---~~~~~~~l~G 87 (157)
-++++.++ .+.+....+...+.++++.++.||+|||+.++.+...+.+...++... .+ . + ..+++.++..
T Consensus 300 aG~~~~~a-~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~ 378 (485)
T KOG0569|consen 300 AGFTPEEA-QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI 378 (485)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46788888 888999999999999999999999999999999999888887765542 11 1 1 1223444444
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKS-ELNHQLFMTALVVILMASLSAHSVNMSI 121 (157)
Q Consensus 88 ~~~g~~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~ 121 (157)
++.+.. .++..-+.+|.+|.+.|..+.+......
T Consensus 379 ~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~ 413 (485)
T KOG0569|consen 379 ISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVN 413 (485)
T ss_pred HhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHH
Confidence 333332 5677889999999999998876544433
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=63.32 Aligned_cols=129 Identities=9% Similarity=-0.018 Sum_probs=100.5
Q ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHH-HHHHHHHhcCHHHHHHHHHHHHhh
Q psy69 11 FCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFF-GWLLMAFADDVLQLCIGRFITGVA 89 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~ 89 (157)
...++.+++++.+. +.+.+....-..+.+++.|.++||+|++...+.+..+..+ +-....+ +++.-..+..++|+.
T Consensus 289 ~fF~~rfGlS~~~a-~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSA-GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLS 365 (459)
T ss_pred HHHHHhhCCChhhc-cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhh
Confidence 34556789999999 9999999999999999999999999999776554443322 2222222 333344566788888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHI 142 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (157)
.....-.....++..+|.+..|++.+..+...++|.++.+.+.+.+.+.++.+
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 88877778888999999999999999999999999999999999888766543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=67.98 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=77.3
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA-------DDVLQLCIGRFIT 86 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 86 (157)
+++++.++.+. +.....+.+...+..+.+|+++||+|.+|++......++++..+.... .+...........
T Consensus 246 ~~~fg~~~~~A-g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 246 VTQFGLSPVTA-GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HHhcCCChhhH-HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence 35688899998 899999999999999999999999999999999998888887776654 2333333333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
++..|.....+.-++..++|++. +...++.....++|...-+..
T Consensus 325 ~~~~G~GnGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~ 368 (417)
T COG2223 325 FVFAGLGNGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLA 368 (417)
T ss_pred HHHhccCcchheeechHHHHhhh-hHHHHHHHHhccccccchhHH
Confidence 33333334444455566665533 445666665555554333333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-06 Score=63.30 Aligned_cols=117 Identities=8% Similarity=-0.183 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+.++... +...+.+..+..+|.++.+++.||+++|+.+.+......+..++..+.++... ....++.|++.+..++..
T Consensus 265 ~~~~~~a-~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i 342 (410)
T TIGR00885 265 GMTAGFA-ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTI 342 (410)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444 55566666778899999999999999999988888887777777777666443 566778888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 98 QLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 98 ~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
.+...+..+++.+......... .+|..+.|.+.+.+.+.
T Consensus 343 ~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHH
Confidence 9999999988775434333332 26788888888877763
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=63.00 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH-Hhc-----CHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA-FAD-----DVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
..+..+...+..+++|+++||+|+|+++.++.+...+...... ..+ +++...+..+...++.|..+....-++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 3445667778899999999999999999988877766654322 222 3444444444444555555556666777
Q ss_pred HHHHH
Q psy69 103 ALVVI 107 (157)
Q Consensus 103 ~~~p~ 107 (157)
+.+|+
T Consensus 372 ~~f~~ 376 (462)
T PRK15034 372 VIFRQ 376 (462)
T ss_pred HHHhh
Confidence 77764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-05 Score=59.53 Aligned_cols=119 Identities=12% Similarity=-0.022 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhH-HHHHHHHHHHH--hcCHHHHHHHHHHHHhhhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASI-PFFFGWLLMAF--ADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.+.++.+. ++......++..+++.+.+++.||++++........ ...+....... ..+.+.+....++.|++.+..
T Consensus 238 ~g~~~~~~-~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 316 (394)
T PRK11652 238 LGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGML 316 (394)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 56788888 888888888888999999999999884332221111 11111111122 234566677888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+....+..|.+| +.++...+..+....++..+++.+...+..
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999887 567888888888888888888877666543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-05 Score=63.36 Aligned_cols=108 Identities=8% Similarity=-0.039 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIPFFFGWLLMAFADD---------VLQLCIGRFITGVAIGK 92 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g~ 92 (157)
+++++...+...+..++.+++-+| ++.++.+.++.++.+++........+ .++....+++.|++...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 455566665566666665444444 44456677888888888777665543 46788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+....++.+..|++.|++.++.+.....++..++..+..
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777777766653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-05 Score=62.11 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchh-------hhhhhHHHHHHHHHH-----HHh-----cCHHHHHHHHHHHHh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTT-------LQVASIPFFFGWLLM-----AFA-----DDVLQLCIGRFITGV 88 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~-------~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~l~G~ 88 (157)
.++++...+...+.+++.+++.||+++|+. +.++.++.+++.+.. .+. .+.+++....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 345666667777888889999999999863 556666655554322 121 256777788999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
|.+...+....++.+..|+++++..++.++...++|..++..+....
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987776544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=62.11 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
.+.... +...+...+.-.+...+.+++.+|+|.|+.++++...+.+=...++++++.+.+.+.+.+.|+..+.......
T Consensus 256 ~g~~~~-G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 256 QGNQMY-GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHH-hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556 8888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcc
Q psy69 99 LFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~ 135 (157)
-|+++.+|+|..++.... .+...+++..+.+.+.+.+
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l 372 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL 372 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 999999999987766553 3455555555554444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.3e-06 Score=64.56 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=68.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-----cchhhhhhhHHHH-HHHHHHHHhcCHHHHH-HHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-----RKTTLQVASIPFF-FGWLLMAFADDVLQLC-IGRFITG 87 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-----rk~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~G 87 (157)
+++++++.+. +...+...+...+-. ++|+++||++ ||+.++++.++.. +........++..... +.+++.+
T Consensus 54 ~~lg~s~~~i-~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 131 (468)
T TIGR00788 54 DDLGLDGARY-QRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAA 131 (468)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 4478999999 999999998888854 4999999997 6666666665552 3322233334443343 4788999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVVILMAS 111 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~ 111 (157)
++.+......-.+..|..+ |.+.
T Consensus 132 ~~~a~~dv~~da~~~e~~~-~~~~ 154 (468)
T TIGR00788 132 LAKALYDVLVDSLYSERIR-ESPS 154 (468)
T ss_pred HHHHHHHHhHHHHHhhhhh-cCCC
Confidence 9999989999999999998 5443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=60.55 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=69.0
Q ss_pred CcccccHHHHHHHHHHHH-HHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHh-cCHHHHHHHH----HH
Q psy69 15 DRRIIYKQQVLFVAASLG-VISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFA-DDVLQLCIGR----FI 85 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~l 85 (157)
++.+.++.+. ++..... .++..++.++.+++.||+|||+.+........+..+.. .+. ++.+.+.+.- +.
T Consensus 238 ~~~G~~~~~~-g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (402)
T PRK11902 238 RGAGFSAGEV-GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLC 316 (402)
T ss_pred HhcCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3467888888 8887654 45688999999999999999998776666555444332 333 3445444443 45
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 86 TGVAIGKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 86 ~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
.|++.+........++++.+|.+.++....
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFSATQYALLSA 346 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 666677777778888888888877765333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-05 Score=57.83 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.++|+.+. +...+...+.....++....+++|.. +|+..+.....+.++.....+.+....+.- .+++|++.|..+
T Consensus 237 ~~G~sa~~a-G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F 314 (395)
T COG2807 237 DRGLSAAEA-GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAF 314 (395)
T ss_pred HcCCCHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHH
Confidence 467899999 99999999999999999999999755 455555555666666655556553322222 489999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccc
Q psy69 95 LNHQLFMTALVVI-LMASLSAHSVNMSIGMCQGFSAVLLPQLHRESSHIL 143 (157)
Q Consensus 95 ~~~~~~~~~~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (157)
+....++.+..+. +..++..+..+....+-.++||.+.+.+++.+++|.
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 9999988887764 444555555555555568888999999988877764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=61.47 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
+.+++..|+ +.+.+...+..+++++++|.++||.+ +|+.+.+..++.++........++++.+++...+..+......
T Consensus 31 ~~G~s~~qI-G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~ 109 (400)
T PF03825_consen 31 SRGFSGTQI-GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTM 109 (400)
T ss_pred hCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHH
Confidence 356899999 99999999999999999999999976 5677766666666655566667888888888888888877777
Q ss_pred HHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVV 106 (157)
Q Consensus 95 ~~~~~~~~~~~p 106 (157)
+...++..+...
T Consensus 110 pl~dsi~~~~~~ 121 (400)
T PF03825_consen 110 PLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHcc
Confidence 777777777765
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-05 Score=59.44 Aligned_cols=110 Identities=13% Similarity=-0.029 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc-----hhh--hhhhHHHHHHHHHHHH---------hcCHHHHHHHHHHHHhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK-----TTL--QVASIPFFFGWLLMAF---------ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk-----~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~ 89 (157)
+++.+...+...+.+++..++..|.+|| ... .++.++.+++.....+ ..+++++.+..++.++|
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g 394 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG 394 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 5667777777777777766544454443 222 5666776666666554 35889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.....+....++.|..|++.|++..+.+.....+|..++..+....
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887776654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=66.86 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=94.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh----Hhccchhh-hhhhHHHHHHHHHHHHh-c-------CHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME----VWGRKTTL-QVASIPFFFGWLLMAFA-D-------DVLQLCI 81 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d----~~grk~~~-~~~~~~~~~~~~~~~~~-~-------~~~~~~~ 81 (157)
+..++++... +.+.....+-.++..|+.|.++| |+||||.. +++....+++..+.... + ...+..+
T Consensus 30 ~~~gl~~~~~-g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~ 108 (428)
T PF13347_consen 30 DVLGLSPALA-GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV 108 (428)
T ss_pred HHcCCCHHHH-HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence 4467899999 99999999999999999999999 89987665 45667777776665544 3 1234567
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 82 GRFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 82 ~~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..++..++....+....++..|+.+ +++|.+..+.......+|..+...+.+.+.
T Consensus 109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777899999989999999999998 568999998888887777765555555554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-05 Score=59.04 Aligned_cols=121 Identities=7% Similarity=-0.063 Sum_probs=77.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhh--------hhhHHH--HHHHHHHHH-hcCHHHHHHHHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQ--------VASIPF--FFGWLLMAF-ADDVLQLCIGRF 84 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~--------~~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 84 (157)
..+.+..+. ++..+...++..++.++.|+++||+++|+... ...... .+....... ..+....+++..
T Consensus 291 ~~g~s~~~~-g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (465)
T TIGR00894 291 VLRVSGKEN-GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369 (465)
T ss_pred HhCcChHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 467788888 99999999999999999999999987653221 111111 111111122 223444444445
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 85 ITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 85 l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
+.+.+.+...........|..|. .++...+..+....++..+++.+.+.+.++
T Consensus 370 l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 370 LANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 55555554444444555566655 788899998888888888888887777653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.7e-05 Score=59.07 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=89.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhh-hhhhHHHHHHHHHHHHhcC------HHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTL-QVASIPFFFGWLLMAFADD------VLQLCIGR 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (157)
+..++++..+ +.+..+.-+-..+.-|+.|.++|| +||||.. +++.+..+++..+....++ ..+..+..
T Consensus 38 ~~~Gl~~~~~-g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 38 DIFGIPAGFV-GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HhhCCCHHHH-HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 4568899999 999999999999999999999996 7887655 4555666666655443332 34556667
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy69 84 FITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVL 131 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~ 131 (157)
.+..++.........++..|+.+ +|+|.+..+.+..+..+|..+++.+
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888899999999998 8899999998887777766555444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=56.71 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
+.+...+.++.+++.+++++++||+|+|+.+..+.....+...+..+.+ +...+.+.-++.|++.+.......++++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788889999999999999999887655554444333333322 22234445566787777766666777777
Q ss_pred HHHHH-----HH--HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 104 LVVIL-----MA--SLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 104 ~~p~~-----~r--~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
..+-+ .| +...+......-++.+++..+.+.+.
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77633 22 22223333444455555555544443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-05 Score=57.15 Aligned_cols=112 Identities=7% Similarity=-0.202 Sum_probs=69.8
Q ss_pred ccccHHHHHHHHH--HHHHHHHHHHHHhH-HHHHhHhccchhhhhhhHHH-HHHHHHHH-H--hcC-HHHHHHHHHHHHh
Q psy69 17 RIIYKQQVLFVAA--SLGVISNPLGALLS-GTIMEVWGRKTTLQVASIPF-FFGWLLMA-F--ADD-VLQLCIGRFITGV 88 (157)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~g~~i~~~~~-g~l~d~~grk~~~~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~~l~G~ 88 (157)
.+.+..+. +... ....+..++.+++. ++..||+||||..++..... ........ + ..+ ..+.+....+.++
T Consensus 31 ~g~~~~~i-Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (390)
T TIGR02718 31 DGAPLTAL-AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASL 109 (390)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 57899999 8863 56677787788888 55789999998865554332 21222222 1 222 2333444455555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSA 129 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~ 129 (157)
...........+..|..+++.++...+....+..+|..++.
T Consensus 110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~ 150 (390)
T TIGR02718 110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGG 150 (390)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHH
Confidence 56666666777777888777777766666666555555554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.6e-06 Score=64.84 Aligned_cols=122 Identities=10% Similarity=-0.023 Sum_probs=99.0
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----------cCHHHHHHHH
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----------DDVLQLCIGR 83 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 83 (157)
.+..+.++.+. +.......++..++....+.+.+|++.|+.+.++.++.+++....... ++.+.++..-
T Consensus 280 ~~~lG~s~~~~-G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 280 TQCLPGGPSFS-GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred cccCCCCcchh-hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 34578899999 999999999999999999999999999999999888887776443211 3333445567
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 84 FITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
++.+++.+........++++..|++.+++..+..+...++|..+++.+...+.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899989888999999999999999999998888888888888876555554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=57.15 Aligned_cols=119 Identities=12% Similarity=0.135 Sum_probs=89.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhhhhHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD--DVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~ 95 (157)
+.++.+. .........+..++.++...+++|+|+|+++.++.++.+++..+..+.+ +....++...+.+++.+...+
T Consensus 268 g~~~l~~-~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 268 GDPELFA-YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred CChHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 3344555 5666777777888899999999999999999999999999998888765 677788888999999999999
Q ss_pred HHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 96 NHQLFMTALVVILM-----A--SLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 96 ~~~~~~~~~~p~~~-----r--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.++|..+-.+ | |...+......=+|.+++..+.++...
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998876432 1 222333334444666777666655543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-05 Score=56.43 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=102.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HhccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIME-VWGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d-~~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~ 90 (157)
+.++++..|. ...+.....|..++....|++.. |.++|+...++.....++..+.. ...+.+.+-..-++.|++.
T Consensus 237 ~Vfgmsv~eT-T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 237 EVFGMSVGET-TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4488999999 99999999999999999998887 57777777777777666655533 3457788888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|.......+.+.+..++++.+...+.++....++.+++....+.+.+
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888777654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=58.77 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=70.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh----ccchhh-hhhhHHHHHHHHHHH-Hh----cC--HHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW----GRKTTL-QVASIPFFFGWLLMA-FA----DD--VLQLCIG 82 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~----grk~~~-~~~~~~~~~~~~~~~-~~----~~--~~~~~~~ 82 (157)
+..++++.+. +.+.+...+...+..++.|+++||. |||+.. .++.+...+...+.. .. .+ ....++.
T Consensus 37 ~~~gl~~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (448)
T PRK09848 37 DVAGVGAAAA-GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT 115 (448)
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence 4468899999 9999999999999999999999996 666654 444444443333321 11 11 2233445
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy69 83 RFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNM 119 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~ 119 (157)
..+.+++.+..++...++..|..+ +++|.+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~ 153 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGI 153 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 567788888877777777777664 4567776655543
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.9e-06 Score=64.44 Aligned_cols=111 Identities=9% Similarity=0.022 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+........|-++.-++.+++.+|+|+-+++..++...++=.+..++..|.|..+..-.++|+..+..+...-+|++...
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va 488 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA 488 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44455566677777788889999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhccc
Q psy69 106 VILMASLSAH-SVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 106 p~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (157)
||+.|.++.+ ......++|-++|+++.+.+.
T Consensus 489 Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v 520 (618)
T KOG3762|consen 489 PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV 520 (618)
T ss_pred CCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence 9999999988 444556677677766665543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.3e-05 Score=45.33 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=59.0
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHH
Q psy69 8 LPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQL 79 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (157)
+|.+.++ .++|..+. +++.+..++|+.+|++...++.++.++++.+..+.+...+....+++.++.+.+
T Consensus 15 LP~M~~~--~~ls~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 15 LPLMQAD--GGLSLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hHHHHHh--cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4444443 56899999 999999999999999999999999888888999999999999999988877654
|
Note that many members are hypothetical proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.3e-05 Score=56.95 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=56.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHH--HHHHHH-HH----hcCH-HHHHHHHHHHHh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFF--FGWLLM-AF----ADDV-LQLCIGRFITGV 88 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~--~~~~~~-~~----~~~~-~~~~~~~~l~G~ 88 (157)
.|++.++. +.+.+...+...+.+++.|.++||+|.||-+++...... .+.... .+ ..|. ...+++....|+
T Consensus 38 ~GLs~~~i-G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~ 116 (412)
T PF01306_consen 38 AGLSGTEI-GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL 116 (412)
T ss_dssp H---HHHH-HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT
T ss_pred cCCCHHHH-HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999 999999999999999999999999997776554432221 122221 11 1233 233344444566
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q psy69 89 AIGKSELNHQLFMTALVVIL 108 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~ 108 (157)
......+...+|+.+....+
T Consensus 117 ~f~~~~~~~Ea~~er~sr~~ 136 (412)
T PF01306_consen 117 VFNAGVPLSEAYAERVSRRN 136 (412)
T ss_dssp TTTTHHHHHHHHHHHHHHHH
T ss_pred HHcccchHHHHHHHHHHHHh
Confidence 66666677777766665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-06 Score=68.94 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=3.0
Q ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cC---
Q psy69 3 MSDTPLPIFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DD--- 75 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~--- 75 (157)
|.+..++.. ++++++++.+. +++.+.+-++..+..++..+..+|..|.|.+-.+.++++++.+++++- +.
T Consensus 21 ~~~~~ltti--ErRF~l~S~~~-G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 21 YVNSSLTTI--ERRFGLSSSQS-GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH--HHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 333444433 34488999999 999999999999999999999999888888888888888888775531 00
Q ss_pred -------------------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy69 76 -------------------------------------------VLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASL 112 (157)
Q Consensus 76 -------------------------------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~ 112 (157)
+..++++.++.|+|....++...+|+-|.++++.-+.
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPL 177 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCcc
Confidence 1345667899999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc------CC--cccccCCCChhhhhh
Q psy69 113 SAHSVNMSIGMCQGFSAVLLPQLHR------ES--SHILVTPGEASWIGK 154 (157)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~w~~~ 154 (157)
-.+.......+|.++|-++.+.... +. ...-..+++.+|+.+
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp --------------------------------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 7777777666666666555444431 11 122345666677653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=43.37 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=40.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP 62 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~ 62 (157)
+.++++.+. +.+.++..+...++++++|.++||+++++..+.....
T Consensus 29 ~~Gl~~~~i-Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 29 QLGLSPSQI-GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 478999999 9999999999999999999999999999887665443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00059 Score=55.73 Aligned_cols=118 Identities=17% Similarity=0.069 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADD--------VLQLCIGRFITG 87 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G 87 (157)
.+.++.+. ..+...+....-+..+++|+++|+ +||++++.++.++..++..+..+... ....+++-.+..
T Consensus 18 lg~~~~~A-~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia 96 (654)
T TIGR00926 18 LGFSESTS-TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA 96 (654)
T ss_pred cCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence 56777777 777777777777889999999996 89999999999998888877766421 223556778888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 88 VAIGKSELNHQLFMTALVVILM---ASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+|.|+.-++..+...|.++++. |.+...+.....++|..++..+.+.+
T Consensus 97 ~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l 147 (654)
T TIGR00926 97 LGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPIL 147 (654)
T ss_pred hhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988999999999887543 44444556666666666666665554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=56.10 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=96.3
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccch-hhhhhhHHHHHHHHHHHHhcC------HHHHHH
Q psy69 13 YLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKT-TLQVASIPFFFGWLLMAFADD------VLQLCI 81 (157)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 81 (157)
+.|..++++..+ +.+..+.=+-.++.-|+.|.++|| +||+| -++++.+..++.+.++-.+++ ....++
T Consensus 39 YTdv~Gis~~~a-G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 39 YTDVFGLSAALA-GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HhcccCCcHHHH-HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 345678999999 888888888899999999999996 77654 456666777777777766653 345667
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 82 GRFITGVAIGKSELNHQLFMTALVV-ILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 82 ~~~l~G~~~g~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
...+.++++........++..|+.+ +++|.+..+.+.....+|..+...+.+.+
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999988889999999987 67899999998888887766665555444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00059 Score=52.18 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=85.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc-----cchhhh-hhhHHHHHHHHHHHH-----hc-------CH-
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG-----RKTTLQ-VASIPFFFGWLLMAF-----AD-------DV- 76 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g-----rk~~~~-~~~~~~~~~~~~~~~-----~~-------~~- 76 (157)
|.+++..-. +....+..+... ..+..|+.+|+.+ ||..++ .+......+..+..+ .. +.
T Consensus 9 EL~vpA~lv-~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 9 ELGVPAWLV-ALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HhccHHHHH-HHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 355666666 666666665555 5899999999988 665554 444444444444333 12 12
Q ss_pred H---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 77 L---QLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 77 ~---~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
. ...+...+.|++.+...+...++..|..|+|+|++..++.....-+|..++..+.+.+.+
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 223467889999999999999999999999999999998888888888888777665553
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=55.32 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHH
Q psy69 31 LGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAI--GKSELNHQLFMTALVVIL 108 (157)
Q Consensus 31 ~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~--g~~~~~~~~~~~~~~p~~ 108 (157)
...+...+.++..|.++||+|||..+.+..+...+......+.. ++..+ +.++.. +.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34677888999999999999999999998888877777766655 33333 333332 334677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 109 MASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 109 ~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.|....+..+..+..+..+++.+...+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~ 171 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYL 171 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999988887776666665554443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.9e-07 Score=68.10 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=85.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMA---FADDVLQLCIGRFITGVA 89 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~ 89 (157)
+.+.+++.++. .++.+.+..-+.+-+.++|++.|| +|.|...++-.....++.++.+ ..+.+|.+..+|++.|+|
T Consensus 71 k~d~ni~~akf-tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIG 149 (459)
T KOG4686|consen 71 KLDSNIEYAKF-TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIG 149 (459)
T ss_pred hcccccceeee-eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccC
Confidence 34456666677 788888889999999999999996 7777666665555566665544 357889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.-....+.+.|...++..++.+...+..-..-.+|..+-..+.+++
T Consensus 150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 8887788888888777666665555554444444433333333333
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00041 Score=53.67 Aligned_cols=119 Identities=11% Similarity=-0.045 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc------CHH--HHHHHHHHHHhhhh
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD------DVL--QLCIGRFITGVAIG 91 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g 91 (157)
+.... -|...++.+......+.+-|+.||+|-|...+++...-+++..+-..+. +++ ....+..+.+.+.-
T Consensus 77 s~~~~-~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~ 155 (480)
T KOG2563|consen 77 SSSAA-DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQP 155 (480)
T ss_pred chHHH-HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhh
Confidence 44445 5788888888999999999999999999999999999999988866542 233 44556677766665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
.....-.-...-++|+++|+.++..-.++-.+|.+++.++-|.+.|.+
T Consensus 156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 555554556677899999999999888887888888888888887754
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.3e-05 Score=56.96 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHH
Q psy69 20 YKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNH 97 (157)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~ 97 (157)
+..+. +....-..+...+++.+.|.++||++ |......+.+....+.....+++++..+++-++..+++.+...+..
T Consensus 304 p~w~~-G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl 382 (464)
T KOG3764|consen 304 PGWEV-GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASL 382 (464)
T ss_pred CCcce-eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 33466 66666678889999999999999999 6666666666666666667788999999999999899888887776
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 98 QLFMTALVVILMAS------LSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 98 ~~~~~~~~p~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.....+.+..++-. ...++....+++++++|+.+.+.+.
T Consensus 383 ~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv 427 (464)
T KOG3764|consen 383 IPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV 427 (464)
T ss_pred hhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence 66666666655433 4445566666677777766665553
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0034 Score=49.73 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=74.8
Q ss_pred HHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHH---HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy69 35 SNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVL---QLCIGRFITGVAIGKSELNHQLFMTALVVILMAS 111 (157)
Q Consensus 35 g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~ 111 (157)
.........+...|++|||.....+.....++.+...+..+.. ...+...+...+.+..+.....+..|.+|+..|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4445556667999999999999999999999988888765432 3555666666666666777799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy69 112 LSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ 132 (157)
.+.+.......++..+++.+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~ 462 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFP 462 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998877777776666665543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0053 Score=48.63 Aligned_cols=111 Identities=9% Similarity=0.052 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhcc--ch-----hhhhhhHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGR--KT-----TLQVASIPFFFGWLLMAFA---------DDVLQLCIGRFITGVA 89 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~gr--k~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~ 89 (157)
++.++...+..++.+++.+++-.|.+| |. -+.++.+..+++...+.+. .+.+++++..+++++|
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 567888888888888888888777633 21 1556667777776555431 2567888899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSI-GMCQGFSAVLLPQLH 136 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (157)
.-+..+...+.+++..|+|.|++.++.+.... .++..++..+.....
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887743 577777766666553
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=50.76 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHHHhcC---------------------HHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMAFADD---------------------VLQLCIGR 83 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 83 (157)
.+....+.+...+.+++..++.+|+|+ |+....+.++.+++.....+.++ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555666666888889999999995 66667777777777666654332 36677788
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 84 FITGVAIGKSELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 84 ~l~G~~~g~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.+.|+..+..+..-++++++..+++ ..|..+++.|....+...+..+..+.+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~ 442 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD 442 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999964 4488888999988887777776655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0019 Score=51.22 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc----C-------H-HHH--HHHHHHHHhhhhhhH
Q psy69 29 ASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD----D-------V-LQL--CIGRFITGVAIGKSE 94 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~----~-------~-~~~--~~~~~l~G~~~g~~~ 94 (157)
.....+...++..+..++.||+|||+.++.+...+.++.++.+... . . +.. ..+-++..+..+ ..
T Consensus 335 ~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g-~g 413 (513)
T KOG0254|consen 335 SIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG-WG 413 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc-cc
Confidence 3344555667777779999999999999999999988887766431 1 1 111 112222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy69 95 LNHQLFMTALVVILMASLSAHS 116 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~ 116 (157)
+....+.+|.+|.+.|++..+.
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHH
Confidence 4555788999999999877653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=49.39 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhh-HHHHHHHHHHHHh-cC-HHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVAS-IPFFFGWLLMAFA-DD-VLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
++..++..+...+..++.|-++|+-++||.++... .+..+++....+. ++ ++...+...+.-++.+.......++..
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP 152 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67788888889999999999999988776655444 4445555555553 33 444445566666777888888999999
Q ss_pred HHHHHHHH
Q psy69 103 ALVVILMA 110 (157)
Q Consensus 103 ~~~p~~~r 110 (157)
|..+++.+
T Consensus 153 ~la~~~~~ 160 (477)
T PF11700_consen 153 DLARPEPR 160 (477)
T ss_pred hhcCCChh
Confidence 99988877
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.016 Score=44.83 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=79.5
Q ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy69 10 IFCYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVA 89 (157)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 89 (157)
.+....+.|+++.|...-+.-...-......++...++|..+.|+++++..+...+...+..+.++...+-+.-+..|++
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~ 107 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA 107 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 34444446777776612333344445666788899999999999999999999888888888999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
.+. ..+..+|+-..+|+++--+.++
T Consensus 108 ~a~-evay~sYiys~v~~~~yq~vts 132 (412)
T PF01770_consen 108 TAA-EVAYYSYIYSVVDKEHYQKVTS 132 (412)
T ss_pred HHH-HHHHHHHheeecCHHHHHHHHH
Confidence 887 6667777777777775544544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.005 Score=47.96 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=83.8
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-----ccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHH
Q psy69 12 CYLDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW-----GRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIG 82 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-----grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 82 (157)
..++++++++.+. ....+...+-..+ .++.|.++|.+ .||+-++++.++..++....... .+.....++
T Consensus 15 ~l~~~l~ls~~~~-~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 92 (433)
T PF03092_consen 15 FLKDDLGLSPAQL-QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL 92 (433)
T ss_pred HHHHHcCCCHHHH-HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 3446688999998 8877777766664 89999999985 35555566666655555444442 245555667
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 83 RFITGVAIGKSELNHQLFMTALVVIL--MASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 83 ~~l~G~~~g~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.++..++........-+...|....| .|+...+.......+|..++..+.+.+
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 78888888888899999999998544 355666666666666777666555444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0046 Score=48.62 Aligned_cols=121 Identities=17% Similarity=0.103 Sum_probs=99.2
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHH-HHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSG-TIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g-~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
..++.++.+. +...+.......+++.+.. .+...+|-|+....+.....+.....++.++.|+.+....+.++... .
T Consensus 270 ~~f~w~~~~~-s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~-~ 347 (463)
T KOG2816|consen 270 AKFGWNKKEF-SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI-V 347 (463)
T ss_pred eecCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc-h
Confidence 4467788888 8788877777777777776 77788999998889998889999999999999988888777665544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
.+...+.++.+..++++|+..++....-++...+++.+...+.+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 78888999999999999999998888888888888777655543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0056 Score=47.15 Aligned_cols=111 Identities=13% Similarity=-0.021 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHH--HHHH---HHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 22 QQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPF--FFGW---LLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+. .+.+..+.+|.+++.--...+ |+ |++.+.+.+-. .+.. ....+.++.+.+++..+..|+..|..+..
T Consensus 281 ~~Y-~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 281 DQY-RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHH-HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 444 788999999988886654433 33 33333322222 1111 12234567888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
....+.|-.|+++|..+.+...++-+.|..++.++.-++.+
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888766654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0037 Score=50.51 Aligned_cols=109 Identities=12% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHhccc-hhhhhhhHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhhhhHHHHHH
Q psy69 23 QVLFVAASLGVISNPLGALLSGTIMEVWGRK-TTLQVASIPFFFGWLLMAFA--DDVLQLCIGRFITGVAIGKSELNHQL 99 (157)
Q Consensus 23 ~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~ 99 (157)
+. ++......++..+++.+.|.+..+++|- ..++.+..++.+++.+++.. ++....+..-++.|++.|........
T Consensus 350 ~~-~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 350 EI-GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred ee-ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 45 5666777888888999999999988874 45556666665554444432 35555667788999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 100 FMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 100 ~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
..+-..|.++-+.+.+.......+|..++..+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888999999999888877777777776554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0038 Score=48.83 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
..+++.+....+.+++.+.+.|+.+.|..+.++............+ +|-+.+..+-++.|+|.+..+...-.|++|+.+
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 3367777888899999999999999999999988887666555444 456778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 107 ILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 107 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
+|.+.+..+........+..+|...+-.+.
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 999998888777766666777755544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=45.53 Aligned_cols=112 Identities=15% Similarity=-0.005 Sum_probs=60.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~ 89 (157)
+..+.++.+. ++.......+..+++.+.+.+.++..+++..........++..+... .+++....+..++.+++
T Consensus 247 ~~~g~s~~~~-gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G 325 (413)
T PRK15403 247 DAGGMTTSQF-AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG 325 (413)
T ss_pred HhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 3467888888 88887777788888888877665444444332222222222222211 22333345677888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFS 128 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~ 128 (157)
.+...+......- .-.+..++++.+..+.....+...+
T Consensus 326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~ 363 (413)
T PRK15403 326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVS 363 (413)
T ss_pred HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 8877666653221 1111124556555444443333333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0065 Score=46.60 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=74.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.++.+. +...+.+..+.++|.+++.++.+|+...|.+.+......+.++...+.++.. -+.+-++.|+..+..++.
T Consensus 267 ~g~~~~~a-a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPT 344 (422)
T COG0738 267 LGLNEQQA-AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPT 344 (422)
T ss_pred CCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHH
Confidence 56788899 9999999999999999999999999999998888877777777777777743 334566778899999999
Q ss_pred HHHHHHHHHH
Q psy69 97 HQLFMTALVV 106 (157)
Q Consensus 97 ~~~~~~~~~p 106 (157)
..+...+..|
T Consensus 345 Ifslal~~l~ 354 (422)
T COG0738 345 IFSLALKNLG 354 (422)
T ss_pred HHHHHHhccC
Confidence 9999888888
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0061 Score=46.62 Aligned_cols=122 Identities=10% Similarity=-0.023 Sum_probs=96.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhc--cchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWG--RKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~g--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g 91 (157)
+..+++++.|. +.+.+...++..+.+....+..||.. -+..+.....++.-..++.+..+....+.++-.+-.+...
T Consensus 289 ~~rfg~ss~~~-G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A 367 (451)
T KOG2615|consen 289 HGRFGYSSMQQ-GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA 367 (451)
T ss_pred cCccCCChhhh-eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence 35578899999 88888887777777777777778766 4556666666666666666667777777777778777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+....++....|.+.||..+++......++=++||++.+.+.
T Consensus 368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 778888899999999999999999999999999999988875554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0045 Score=45.99 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 72 FADDVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 72 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...++..++++.++.|.|.+..++..+.|+.+..|+|.+++..+..+...++|..++|++...+.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999987665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.77 E-value=2.8e-06 Score=65.70 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH--H--hcCH-----HHHHHHHHHHHhhhh-hhHHHHHHHH
Q psy69 32 GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA--F--ADDV-----LQLCIGRFITGVAIG-KSELNHQLFM 101 (157)
Q Consensus 32 ~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~~~l~G~~~g-~~~~~~~~~~ 101 (157)
..+...++.+...++.||+|||+.++.+.....++..... . .++. ...+++-.+.....+ +..+....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccc
Confidence 3345556777778999999999999998888777766553 1 1111 111222222222222 2345566888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 102 TALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 102 ~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
.|.+|++.|++..+.......++..+++.+.+.+.
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999998888666655555555555554444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.011 Score=46.79 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=66.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHHHHHHH-HHHHHhcCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIPFFFGW-LLMAFADDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~ 90 (157)
..+.+..+. ....+.+.++.+++.+++|+++|| ..+|........++.... .....................+.
T Consensus 303 ~~~~s~~~a-~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 381 (495)
T KOG2533|consen 303 NGGYSELQA-NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGL 381 (495)
T ss_pred CCCcChHHh-ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhh
Confidence 455788889 999999999999999999999999 666766666655554444 33333332333333334444445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVILMASLSAH 115 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~ 115 (157)
....+....+.++...++.|.....
T Consensus 382 ~~~~~~~~~w~s~~~~g~~k~~~~~ 406 (495)
T KOG2533|consen 382 IATAIIALSWTSANLAGNTKALTTV 406 (495)
T ss_pred HHHHHHHHhhccccccchHHhHHHH
Confidence 5566777788888877776654443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=44.73 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=71.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccc---------hhhhhhhHHHHHHHHHHHHhcC-HHHHHH----
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRK---------TTLQVASIPFFFGWLLMAFADD-VLQLCI---- 81 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 81 (157)
..+++..+. ++..++..+...+..+++|.++||.-+| ..-.++....+++.+..++.++ .....+
T Consensus 288 VL~f~v~~~-G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~ 366 (466)
T KOG2532|consen 288 VLGFDVRET-GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLT 366 (466)
T ss_pred HhCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHH
Confidence 367888899 9999999999999999999999998663 1122333333333444444432 111111
Q ss_pred -HHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 82 -GRFITGVAIGKSELNHQLFMTALV-VILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 82 -~~~l~G~~~g~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+.|+..++.. ..-.. .+++-+...+..+....+...+++.+.+.+.+
T Consensus 367 ~~~~~~g~~~~Gf~------~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 367 IAIGLSGFNISGFY------KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHcccchhhhH------hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 1222333222221 12222 45566778888888888888888888888875
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=41.08 Aligned_cols=108 Identities=14% Similarity=0.042 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc--h-----hhhhhhHHHHHHHHHHHHh----------cCHHHHHHHHHHHHh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK--T-----TLQVASIPFFFGWLLMAFA----------DDVLQLCIGRFITGV 88 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk--~-----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~ 88 (157)
.+.++...+..++.+++..++..+.+++ . -+-++..++..+.++.... .+.++++...+++++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4668888888888888888888885554 1 2344555555555544332 257888889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy69 89 AIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 89 ~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 133 (157)
+.=+..+...+++.+..|++..+..++.+......+..++..+.+
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 999999999999999999999999999888877777777665554
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.003 Score=46.39 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
++....++ +.......-..++...+.|-++||-|||+.-+.-.+...+++ ++-.++++-+++++|.+-|+..+..+..
T Consensus 67 YgFgkG~I-gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 67 YGFGKGDI-GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred cCccCCcc-ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 44555555 555555555566667788899999999997555444444443 3445788999999999999999988887
Q ss_pred HHHH-HHHHH
Q psy69 97 HQLF-MTALV 105 (157)
Q Consensus 97 ~~~~-~~~~~ 105 (157)
..+| +.|+.
T Consensus 145 FEsWliaEHn 154 (454)
T KOG4332|consen 145 FESWLIAEHN 154 (454)
T ss_pred HHHHHHHHhh
Confidence 6664 55665
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.23 Score=38.93 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=79.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhcC-------HHHHHHHHHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFADD-------VLQLCIGRFIT 86 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~l~ 86 (157)
.|+++... +..-+...+....+.....++.+|+|..+.=+++...-.....++ .+.+. ...++.+-++.
T Consensus 288 ~G~s~~~i-gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 288 QGYSPSVI-GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 47899999 999999999999999999999999998887666655433332222 22221 12222222222
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Q psy69 87 GVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRESS 140 (157)
Q Consensus 87 G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
=+|.=+......-+++|.+|+++|+..++..+...++. -+-..+...+.|++.
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf-~ll~~~~~ii~~~P~ 419 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF-ELLSFVLTIIFPRPS 419 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH-HHHHHHHHhccCChH
Confidence 23333345667788899999999999999877777653 333344444555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=44.39 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhh-hHHHHHHHHHHHHhcC--H-HHHHHHHHHHHhhhhhhHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVA-SIPFFFGWLLMAFADD--V-LQLCIGRFITGVAIGKSELNHQLFM 101 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~g~~~~~~~~~~ 101 (157)
+...++..+...+-+++.|-++|+.|+||..... ..+..++.....+.++ + +..+++..+..++....+....++.
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L 140 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSML 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHh
Confidence 7778888888889999999999999977665443 4444455555555544 4 4445577888888888889999999
Q ss_pred HHHHHHHHHHHHHH
Q psy69 102 TALVVILMASLSAH 115 (157)
Q Consensus 102 ~~~~p~~~r~~~~~ 115 (157)
.+..+++..++..+
T Consensus 141 ~~~~~k~~~~riS~ 154 (438)
T COG2270 141 PRLTTKDNMGRISG 154 (438)
T ss_pred hhhcCccccCcccc
Confidence 99998876665543
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.003 Score=51.88 Aligned_cols=139 Identities=18% Similarity=0.107 Sum_probs=103.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhc-------------------C
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFAD-------------------D 75 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~-------------------~ 75 (157)
+.+++++.+. +++.+.+-++..+...+..+...|..|.+.+-++.++++++.++.++-+ +
T Consensus 125 rRF~i~Ss~s-G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 125 RRFKISSSQS-GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhcCCCCCcc-eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 3477888889 9999999999999999999999999999999999999999988876420 0
Q ss_pred --------------------------------HH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy69 76 --------------------------------VL-QLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSI- 121 (157)
Q Consensus 76 --------------------------------~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~- 121 (157)
++ .++++-++.|+|....++...+|+-|.+.+++-..-.++.....
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 11 34567899999999999999999999998776555555444444
Q ss_pred ---HHHHHHHHHhhhccccC-CcccccCCCChhhhhh
Q psy69 122 ---GMCQGFSAVLLPQLHRE-SSHILVTPGEASWIGK 154 (157)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~ 154 (157)
.+|+.+|.+++....+. .+.......+..|+++
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 44555555555554443 3334455666777764
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.12 Score=42.14 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhccch----h-----hhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHH
Q psy69 28 AASLGVISNPLGALLSGTIMEVWGRKT----T-----LQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQ 98 (157)
Q Consensus 28 ~~~~~~~g~~i~~~~~g~l~d~~grk~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~ 98 (157)
..++..+++.+|.+..|.+.....+|+ . +.+..+ +.++.++..+.-+...+.+..++.|++.|...+...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 677888999999999998873222222 1 222222 444444444443336788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 99 LFMTALVVILMASLSAHSVNMSIGM 123 (157)
Q Consensus 99 ~~~~~~~p~~~r~~~~~~~~~~~~~ 123 (157)
..++|++. ++-++.-+.......+
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pi 498 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVL 498 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHH
Confidence 99999998 6655555544443333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.37 Score=38.20 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCH--------------------
Q psy69 22 QQVLFVAASLGVISNPLG-ALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDV-------------------- 76 (157)
Q Consensus 22 ~~~~~~~~~~~~~g~~i~-~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~-------------------- 76 (157)
... .++-+...+-..+. .++.+++++|++|++.+.+....+.....+..+. ++.
T Consensus 43 e~i-~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 43 EII-PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 455 66666665555554 8889999999999999887776666665554442 111
Q ss_pred -------HHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 77 -------LQLCIGRFITGVAIGKSEL-NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 77 -------~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
|...+.....-+-.....+ ....+.+|.+..++..|..+..+.+.++|..+++.+..++..
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333333333344 678899999999999999999999999888888877777653
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.018 Score=45.98 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=46.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH-HHHHHHHHHHh
Q psy69 14 LDRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP-FFFGWLLMAFA 73 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~-~~~~~~~~~~~ 73 (157)
..+.++++.+. +.+...-.+..+++.+++|+++||+.+||.++++..+ ...+.++..+.
T Consensus 38 ~kQLGl~p~~~-Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 38 FKQLGLNPAVV-GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHcCCCHHHh-hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 35689999999 9999999999999999999999999987666555544 44445555444
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0011 Score=51.72 Aligned_cols=101 Identities=10% Similarity=-0.037 Sum_probs=68.7
Q ss_pred HHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcC-H---HHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHH
Q psy69 36 NPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADD-V---LQLCIGRFITGV-AIGKSELNHQLFMTALVVILMA 110 (157)
Q Consensus 36 ~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~p~~~r 110 (157)
...|-.+...+.|++|||+..+.+.+.+.+..+..+...| . ...+++..+..+ +.-+.......+-+|.+|.+.|
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR 440 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVR 440 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHh
Confidence 3346677788999999999999999999888888776544 1 112222222222 1222345566778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 111 SLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
++.-++.....-+|..++.....++.
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t 466 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLT 466 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhh
Confidence 99888777766666666665554443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0051 Score=47.92 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH----hccchhhhhhhHH-HHHHHHHHHHhcCHH---------------
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEV----WGRKTTLQVASIP-FFFGWLLMAFADDVL--------------- 77 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~----~grk~~~~~~~~~-~~~~~~~~~~~~~~~--------------- 77 (157)
+++.... +.+.-...+...+.+++.|..+|| |||||.++..... ..++.++..++++..
T Consensus 63 Gvphk~~-S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 63 GVPHKWS-SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred CCCcccc-cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 3444444 555555666777789999999996 9998887665544 455555555554321
Q ss_pred --HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy69 78 --QLCIGRFITGVAIGKSELNHQLFMTALVVILMASL-SAHSVNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 78 --~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~-~~~~~~~~~~~~~~~~~~~~~ 133 (157)
..+++..+.=++....+...-++..|....+.+.+ +++......++|..+|....+
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 23334444445555667888899999998877776 888888888888777755543
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.97 Score=35.76 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhH---hccchhhhhhhHHHHHHHHHHHHhc------------------CHHHHHHHHHHHH
Q psy69 29 ASLGVISNPLGALLSGTIMEV---WGRKTTLQVASIPFFFGWLLMAFAD------------------DVLQLCIGRFITG 87 (157)
Q Consensus 29 ~~~~~~g~~i~~~~~g~l~d~---~grk~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l~G 87 (157)
.....+|..++....+.+.+| +||++++..+..+..+.+++..... ++...++..++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 334455666666777777654 7888888888887777766654421 2456677889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQ 125 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~ 125 (157)
++-...+.....++.+.. ++.|..+.++.....+++.
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence 999999999999999988 5555555554444444333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.39 Score=37.66 Aligned_cols=106 Identities=16% Similarity=0.060 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc-hhhhhhhH---HHHHHHHHHHHh---------cCHHHHHHHHHHHHhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK-TTLQVASI---PFFFGWLLMAFA---------DDVLQLCIGRFITGVAIGK 92 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk-~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~g~ 92 (157)
-.....+++|..+|..+..+.. .-++| +.+.+..+ ++....+++..- ++-+..++..++.|+..|.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566678888888888654431 11222 12232233 333333333211 3456667789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 93 SELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 93 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
..+....+..+.+++++|..+.........+|...|..+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888888887764
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.46 Score=36.83 Aligned_cols=105 Identities=8% Similarity=-0.016 Sum_probs=73.3
Q ss_pred HHHHHH-HHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 26 FVAASL-GVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA---------FADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 26 ~~~~~~-~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
...... +++...+|.+...+..++ +||.. .+..++..+..-+.. +-.+-++.+....++|+..|-..+
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 444455 888999998877777664 34433 333333222221221 124567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
....+..+-+|++++..+..........|...|..+.
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999888887777777777776554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.24 Score=37.66 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=61.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhc---C------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy69 54 TTLQVASIPFFFGWLLMAFAD---D------VLQLCIGRFITGVAIGKSELNHQLFMTALVVIL---MASLSAHSVNMSI 121 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~---~r~~~~~~~~~~~ 121 (157)
++++++.++..++.++..++. . ...+.++..+.++|.|+.-++..++..|.++++ .|.+..+++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 456777788888877744331 1 256778888999999999999999999999876 4555566778888
Q ss_pred HHHHHHHHHhhhccc
Q psy69 122 GMCQGFSAVLLPQLH 136 (157)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (157)
++|..++....+++.
T Consensus 82 n~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred hhhhHhhcccchhhc
Confidence 888888877766664
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.061 Score=40.04 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHh-ccchhhhh--hhHHHHHHHHHHHH----------hcCHHHHHHHHHHHHhhhhhhH
Q psy69 28 AASLGVISNPLGALLSGTIMEVW-GRKTTLQV--ASIPFFFGWLLMAF----------ADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 28 ~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
....++++..+|..+.++..-+. .+|..... ..+++....+++-. -++-++.++..+++|+..|...
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 45578899999999888753221 23333322 22222222222211 1244566777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
+....+..+..++++|..+..........|...|..+.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.48 Score=37.03 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=76.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH----------hcCHHHHHHHHHHHH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF----------ADDVLQLCIGRFITG 87 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G 87 (157)
|+++... +....+..++..++..+....-.+...|+++.++.++.++..+.... .++.+..+.--++..
T Consensus 251 ~fs~~f~-~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 251 HFSPSFY-GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE 329 (433)
T ss_pred ccCHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence 4788877 88887788888888888887777777788887777666555443211 112222233445566
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 88 VAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 88 ~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
+.....+.....+++|+.|+..-++..+......++|..++..+...
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777889999998877777666665555555555444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.3 Score=34.51 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHhHHHHHh-----Hhccchhhhh-hhHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 40 ALLSGTIME-----VWGRKTTLQV-ASIPFFFGWLLMAFA-----------DDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 40 ~~~~g~l~d-----~~grk~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
-+++.++.| |+||||.-+. +..+....+...+.. ++........++.-+..+....++-.+..
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 567888888 9999986332 222222222222221 12222223445555566666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.+..+++.+.++....++...|+.++..+...+
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcceeeEe
Confidence 999999999999999999999999987765444
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.2 Score=39.41 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccc----hhhhhhhHHHHHHH-------HHHHH-hcCHHHHHHHHHHHHhhhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRK----TTLQVASIPFFFGW-------LLMAF-ADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk----~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~l~G~~~g~~ 93 (157)
.++..+...+..+|.+++|.++||+.|+ .......+..+.+. .+... ..+........+++|......
T Consensus 286 ~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~ 365 (493)
T KOG1330|consen 286 LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWF 365 (493)
T ss_pred hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 4556677778888999999999985442 11222222211111 11111 122223333445555554443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q psy69 94 -ELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHR 137 (157)
Q Consensus 94 -~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (157)
.+.......|.+|++.|..+..+......+ |-.-++.+++.+.+
T Consensus 366 ~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd 411 (493)
T KOG1330|consen 366 NWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD 411 (493)
T ss_pred ccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence 344556678899999999888866554443 33333335555543
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.6 Score=33.09 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP---FFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMT 102 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~ 102 (157)
-|.+..+.+|.+++.-......-+ .-+.+-+..+. +.+.-....+.++++..++..+..|+-.|..+....--+.
T Consensus 291 RwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~ 368 (409)
T KOG3880|consen 291 RWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIH 368 (409)
T ss_pred hhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHh
Confidence 677777777776644333222111 11111121222 2222233445678888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 103 ALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 103 ~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
+-.+++.|..+++...+.=.+|..++.++.-.+.|
T Consensus 369 ~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 369 KETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred hcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 99999999999998888888888888777665554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.55 Score=38.64 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHHHHH-HHHHHHHhHHHHHhHhcc--chhhhhhhHHHHHHHHH
Q psy69 15 DRRIIYKQQVLFVAASLGVI-SNPLGALLSGTIMEVWGR--KTTLQVASIPFFFGWLL 69 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~g~l~d~~gr--k~~~~~~~~~~~~~~~~ 69 (157)
+++++++.+. +++.....+ +..++.++.|+++||+++ |+.+.++.+...++.+.
T Consensus 359 ~~~g~s~~~a-g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 359 NQYGISSAEA-NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHcCCcHHHH-HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3578899998 888877665 678999999999999884 45666666555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=87.07 E-value=2.8 Score=32.65 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALVV 106 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p 106 (157)
.+..+..+-..+..+.+.+..+|+..+.=.....++..++.++.+++++.+.-+++-.+.+++.|........+.+ .++
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence 3444445556667788888889887655556666677778888888899988889999999999988877777644 444
Q ss_pred H
Q psy69 107 I 107 (157)
Q Consensus 107 ~ 107 (157)
+
T Consensus 142 ~ 142 (402)
T PF02487_consen 142 K 142 (402)
T ss_pred c
Confidence 3
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=85.32 E-value=4.8 Score=32.01 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy69 27 VAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTALV 105 (157)
Q Consensus 27 ~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 105 (157)
+-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+..++..+....+-..|+-.+....+....+.+..
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 4455667777888999999999999777777777767777777777888888888898888777776666666666554
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.2 Score=39.27 Aligned_cols=91 Identities=16% Similarity=-0.002 Sum_probs=56.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhcc-chhhhhhhHHHHHHHHHHH-Hh---cCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGR-KTTLQVASIPFFFGWLLMA-FA---DDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~gr-k~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~G~~~g 91 (157)
.+++.... +++.....++.++++...|.++||.+. |.+++.......++..... .. .+.+.+...-.+.|.+..
T Consensus 296 sgY~~~~a-G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 296 SGYEGVFA-GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred ccCCcccc-chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 34455667 899999999999999999999999665 5555555555444432222 11 123344445556666666
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy69 92 KSELNHQLFMTALVVIL 108 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~ 108 (157)
+..++..-+-.|..-|.
T Consensus 375 ~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPV 391 (480)
T ss_pred CCCCcceeeeeeecccc
Confidence 55555555555554333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=84.36 E-value=11 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhh--HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQVAS--IPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLFMTA 103 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~ 103 (157)
|.+-....+...++++..|++..++.+..-+.++. ++.+...+++.+.++.+...++..+.+.......++...-++.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~ 367 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK 367 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777788889999999977777754444333 3344445567778899988888888887776666665555555
Q ss_pred HHH
Q psy69 104 LVV 106 (157)
Q Consensus 104 ~~p 106 (157)
...
T Consensus 368 ~l~ 370 (412)
T PF01770_consen 368 NLS 370 (412)
T ss_pred hcc
Confidence 443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=22 Score=28.72 Aligned_cols=31 Identities=23% Similarity=0.104 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy69 18 IIYKQQVLFVAASLGVISNPLGALLSGTIMEV 49 (157)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~ 49 (157)
+-+..+. +.+.+.+..|..+|+.+.+++.++
T Consensus 46 G~s~~~~-~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 46 GDSVTQF-STVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3345555 778888888999999888877643
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=81.75 E-value=6.6 Score=32.12 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy69 75 DVLQLCIGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRES 139 (157)
Q Consensus 75 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
+..|.+-=.++.|++-........-+.-+-+|+++|+..++.+....++|..++.++.......+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666677889999988888888888889999999999999999999999999988887665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 157 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.82 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.68 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.65 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.61 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.61 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.5 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.19 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.15 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.01 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.89 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.84 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.77 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.55 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.93 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=140.47 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHH------------------HhcCHHHHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMA------------------FADDVLQLC 80 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 80 (157)
.++.+. +++.+.+.+|..+|+++.|+++||+|||++++++.+++.++.++++ ++++++.++
T Consensus 52 ~~~~~~-g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 52 AANSLL-GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 345566 8999999999999999999999999999999999999999999888 478999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------
Q psy69 81 IGRFITGVAIGKSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVL----------------------------- 131 (157)
Q Consensus 81 ~~~~l~G~~~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~----------------------------- 131 (157)
++|++.|++.|...+..+.+++|..|+++|++..+..+.....|..++..+
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 999999999999999999999999999999999988777766554444322
Q ss_pred -----hhccccCCcccccCCCChhhhhhc
Q psy69 132 -----LPQLHRESSHILVTPGEASWIGKI 155 (157)
Q Consensus 132 -----~~~~~~~~~~~~~~~~~~~w~~~~ 155 (157)
.....||+|+|+..+++.++.++.
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 233458999999988888776654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=119.29 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=114.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHH---HHhcCHHHHHHHHHHHHhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLM---AFADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G~~~g 91 (157)
++++.++.+. +++.+.+.++..++.++.|+++||+|||+.++.+.+...++.++. .++++++.++++|++.|++.+
T Consensus 54 ~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 132 (438)
T 3o7q_A 54 QAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG 132 (438)
T ss_dssp HHSCCCSHHH-HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHH
Confidence 4478899999 999999999999999999999999999999999999999999988 788999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+....++.|++|+++|++..+..+....+|..+++.+...+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=113.65 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=109.8
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhH
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSE 94 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~ 94 (157)
++++.++.+. +++.+...++..+++++.|+++||+|||+.+..+.....++..+..+.++++.+++.|++.|++.+...
T Consensus 28 ~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 28 RDLNVREGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp TTSSSTTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 4478899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 95 LNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 95 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
+....++.|.+|+++|++..+..+....++..+++.+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999988888888777776665444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=115.03 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=107.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF----ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g 91 (157)
++ .++.+. +++.+.+.++..+++++.|+++||+|||+.++.+.++..++.++..+ +++++.++++|++.|++.+
T Consensus 57 ~~-~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 134 (451)
T 1pw4_A 57 QG-FSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134 (451)
T ss_dssp ST-TCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred Hh-ccHhHH-HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhh
Confidence 35 788889 99999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQ 134 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (157)
...+....++.|++|+++|++..+..+....+|..+++.+.+.
T Consensus 135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888777766655543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=114.12 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=107.1
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-hccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEV-WGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKS 93 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~-~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~ 93 (157)
++++.++.+. +++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++..++++++.++++|++.|++.+..
T Consensus 47 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 47 GDLHITRATA-ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp TSCCSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 3478999999 999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy69 94 ELNHQLFMTALVVILM--ASLSAHSVNMSIGMCQGFSAVLLPQL 135 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (157)
.+....++.|.+|+++ |+...+..+....+|..+++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 66677777777777777776555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=107.92 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh-ccchhhhhhhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhhhhhHHH
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVW-GRKTTLQVASIPFFFGWLLMAFAD-DVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~-grk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.++.+. +++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.++..+++ +++.+++.|++.|++.+...+.
T Consensus 51 ~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 51 LRGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp TTTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence 888999 9999999999999999999999999 999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q psy69 97 HQLFMTALVVILMASLSAHS---VNMSIGMCQGFSAVLLP 133 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~ 133 (157)
..+++.|.+|+++|++..+. .+....+|..+++.+.+
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999766655 66666777666655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=86.29 Aligned_cols=122 Identities=12% Similarity=-0.025 Sum_probs=103.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh--ccchhhhhhhHHHH-HHHHHHHHh--cCHHHHHHHHHHHHhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVW--GRKTTLQVASIPFF-FGWLLMAFA--DDVLQLCIGRFITGVAI 90 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~--grk~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~~~ 90 (157)
..+.++.+. ++..+...++..++.++.+++.||+ |||+.+..+..+.. ++..+..+. .+.+...+..++.|++.
T Consensus 282 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 282 VKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp BSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 467899999 9999999999999999999999999 99998887776665 555555444 36777778888999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccC
Q psy69 91 GKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHRE 138 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 138 (157)
+...+....++.|.+|++.|++..+..+....+ +..+++.+.+.+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999999998 999998888777653
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=86.63 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy69 21 KQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELNHQLF 100 (157)
Q Consensus 21 ~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~ 100 (157)
..+. +...+...++..++.++.++++||+|||+.+..+....++......+.++.+.+.+..++.+++.+........+
T Consensus 258 ~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVF-GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 666777777888899999999999999999888887777766666666777777777778888777777777889
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccc
Q psy69 101 MTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 101 ~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~ 136 (157)
++|.+|++.|++..+. .+...+++..+++.+.+.+.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 9999999999998886 46666667666666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=81.43 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=97.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHH
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSEL 95 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 95 (157)
.++.++.+. +...+...++..++.++.+++.||+|||+.+..+.+...++..+..+.++.+... ..++.|++.+...+
T Consensus 289 ~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 366 (438)
T 3o7q_A 289 IPGMTAGFA-ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQYP 366 (438)
T ss_dssp STTCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHH
T ss_pred cCCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHH
Confidence 357888999 9999999999999999999999999999999998888888877777776665443 44888899998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q psy69 96 NHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHRE 138 (157)
Q Consensus 96 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (157)
....+..|.+|++ ++...+... ...++..+++.+.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999977 777776555 3447788888887777653
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-10 Score=84.49 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=59.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHH---HHHHhcCHH-HHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWL---LMAFADDVL-QLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~l~G~~~g 91 (157)
+++.++.+. +++.+...++..+++++.|+++||+|||+.++++.....+... ...+.+... .....+.+.+++.+
T Consensus 37 ~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (417)
T 2cfq_A 37 INHISKSDT-GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115 (417)
T ss_dssp TTCCCTTTS-HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTT
T ss_pred HhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999 9999999999999999999999999999998887766544221 111221111 12344555555555
Q ss_pred hhHHHHHHHHHHHHHH
Q psy69 92 KSELNHQLFMTALVVI 107 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~ 107 (157)
...+.......++.++
T Consensus 116 ~~~~~~~~~~~~~~~~ 131 (417)
T 2cfq_A 116 FCFNAGAPAVEAFIEK 131 (417)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 4444334444444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-09 Score=82.56 Aligned_cols=112 Identities=15% Similarity=0.005 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhccchhhh-----hhhHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhhhh
Q psy69 26 FVAASLGVISNPLGALLSGTIMEVWGRKTTLQ-----VASIPFFFGWLLMAFAD---------DVLQLCIGRFITGVAIG 91 (157)
Q Consensus 26 ~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~g 91 (157)
+...+...++..++.++.+++.||+|||+... .+..+..++..+..+.. +.+...+..++.|++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM 401 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 55566777888888999999999999987655 55566566555544432 66777788889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+....++.|.+|++.|++..+..+....++..+++.+.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999999888877754
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.7e-08 Score=73.22 Aligned_cols=105 Identities=8% Similarity=0.015 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhh-hhh
Q psy69 19 IYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAI-GKS 93 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~-g~~ 93 (157)
.+.... ........+...++.++.+++.||+|||+.++.+.....++....... .+....++...+...+. ...
T Consensus 309 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 309 ASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCccch-hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 444555 556666778888999999999999999999988888777766554432 12222222222222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy69 94 ELNHQLFMTALVVILMASLSAHSVNMSIGMC 124 (157)
Q Consensus 94 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~ 124 (157)
.+....+.+|.+|++.|++..+.......++
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~ 418 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLA 418 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHH
Confidence 4567789999999999999887655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.6e-08 Score=73.72 Aligned_cols=116 Identities=15% Similarity=0.032 Sum_probs=86.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHH-HHHHHH--HHHH--hcCHHHHHHHHHHHHhhhh
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIP-FFFGWL--LMAF--ADDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G~~~g 91 (157)
.+.++.+. +...+...++..++.++.+++.||++++. ..+... ...+.. .... .++.+...+..++.|++.+
T Consensus 230 ~g~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 306 (375)
T 2gfp_A 230 LGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAG 306 (375)
T ss_dssp HHHHHHHH-HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence 56788888 99999999999999999999999998832 222222 222211 1222 2356666778888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLH 136 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (157)
...+....+..|..| ++|++..+..+....++..+++.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 307 MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 89999999988888777777766665553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-06 Score=66.99 Aligned_cols=104 Identities=8% Similarity=-0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHhHHHHH----hHhccc----hhhhhhhHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhhhhhhHHH
Q psy69 34 ISNPLGALLSGTIM----EVWGRK----TTLQVASIPFFFGWLLMAFA---------DDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 34 ~g~~i~~~~~g~l~----d~~grk----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
++..+..++.+.+. ||.|+| +.+..+.++..++..+..+. .+.+.+.+..++.|++.+...+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 425 (524)
T 2xut_A 346 LLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSAT 425 (524)
T ss_dssp GGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544443 444432 34556666666665555443 25667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...++.|.+|++.|++..+..+....+|..+++.+.+.+.+
T Consensus 426 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 426 GLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999888877754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 157 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.63 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.86 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=3.1e-16 Score=116.36 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=104.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHhhhh
Q psy69 16 RRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFA----DDVLQLCIGRFITGVAIG 91 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~~g 91 (157)
+.++++.|. +++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.++. ++++.+++.|++.|++.+
T Consensus 53 ~~g~s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 131 (447)
T d1pw4a_ 53 EQGFSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131 (447)
T ss_dssp SSTTCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHH
T ss_pred HhCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhh
Confidence 368899999 999999999999999999999999999999999999988888877664 477889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy69 92 KSELNHQLFMTALVVILMASLSAHSVNMSIGMCQGFSAVLL 132 (157)
Q Consensus 92 ~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 132 (157)
...+....++.|++|+++|++..+..+....+|..+++.+.
T Consensus 132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence 99999999999999999999999998888887766665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=8.8e-11 Score=84.76 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=103.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
Q psy69 17 RIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQLCIGRFITGVAIGKSELN 96 (157)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 96 (157)
.+.+.... +.......++..++....+++.||+|+|+.+..+.....++.....+.++.+...+..++.|++.+...+.
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 254 GEQGTRVF-GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhh-cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 33455566 77778888899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccc
Q psy69 97 HQLFMTALVVILMASLSAHS-VNMSIGMCQGFSAVLLPQLHR 137 (157)
Q Consensus 97 ~~~~~~~~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 137 (157)
...+++|.+|+|.|++..+. .+....++..+++.+.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~ 374 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999885 456667777777777666643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.6e-09 Score=76.78 Aligned_cols=93 Identities=13% Similarity=0.014 Sum_probs=69.0
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHHhcCHHH----HHHHHHHHHhhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAFADDVLQ----LCIGRFITGVAI 90 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~G~~~ 90 (157)
++.|.++.+. +++.+...++..+++++.|+++||+|||+.++++.....++..+..+..+... .++.+.+.+...
T Consensus 36 ~~~g~s~~~~-g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T d1pv7a_ 36 DINHISKSDT-GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HHHCCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG
T ss_pred HccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence 4478899999 99999999999999999999999999999999988888888777776554433 234555555555
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy69 91 GKSELNHQLFMTALVVIL 108 (157)
Q Consensus 91 g~~~~~~~~~~~~~~p~~ 108 (157)
+...........+..+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~ 132 (417)
T d1pv7a_ 115 GFCFNAGAPAVEAFIEKV 132 (417)
T ss_dssp GGGGTTHHHHHHHHHHHH
T ss_pred cccccchhhcccccccch
Confidence 555444444444444433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=3.5e-08 Score=72.22 Aligned_cols=122 Identities=12% Similarity=-0.066 Sum_probs=91.9
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhccchhhhhhhHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhh
Q psy69 15 DRRIIYKQQVLFVAASLGVISNPLGALLSGTIMEVWGRKTTLQVASIPFFFGWLLMAF-----ADDVLQLCIGRFITGVA 89 (157)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~g~l~d~~grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~ 89 (157)
+..+.+..+. +.......++..++.++.|++.||++||+..........+....... ..+.+...++.++.|++
T Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 356 (447)
T d1pw4a_ 278 EVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 356 (447)
T ss_dssp TBSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred cccccccchh-hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3467788888 99999999999999999999999999876544433333222222221 34677777888888999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc
Q psy69 90 IGKSELNHQLFMTALVVILMASLSAHSVNMSIGM-CQGFSAVLLPQLHR 137 (157)
Q Consensus 90 ~g~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 137 (157)
.+........+..|.+|++.|++..+..+....+ +...++.+.+.+.+
T Consensus 357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~ 405 (447)
T d1pw4a_ 357 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 405 (447)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999987776555 45556666666654
|