Psyllid ID: psy7005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MGNIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQKKSKVVQDA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEccccccccHHHHHHHHHcccccEcccc
Coil and Loop (DISEMBL)
mgniipkgrgIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWlpetegktLHEIELHFKQKKSKVVQDA
Flexible Loop (DISEMBL)
mgniipkgrgiASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHfkqkkskvvqda
Low Complexity Region (SEG)
MGNIIPKGRGIASGlvatvayalafataktflDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQKKSKVVQDA
Disordered region (IsUnstruct)
*******GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHF***********
Disordered Region (DISOPRED)
MGNIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIE**************
Disordered Region (DISEMBL)
MGNIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHF***********
Disordered Region (DISPRO)
*GNIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQKK*******
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQKKSKVVQDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.840	0.086	0.426	8e-12
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.840	0.093	0.4	8e-12
B4QBN2	857	Facilitated trehalose tra	N/A	N/A	0.840	0.086	0.44	2e-11
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.840	0.086	0.426	2e-11
A1Z8N1	857	Facilitated trehalose tra	yes	N/A	0.840	0.086	0.426	2e-11
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.840	0.143	0.413	2e-11
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.840	0.086	0.413	3e-11
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.840	0.151	0.44	4e-11
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.840	0.091	0.413	5e-11
B4HNS1	488	Facilitated trehalose tra	N/A	N/A	0.840	0.151	0.44	6e-11

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     ++  F   KTF DL + +G HG F+L+G+    GL ++ 
Sbjct: 759 MGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 818

Query: 60  IWLPETEGKTLHEIE 74
           I++PET+GKTL +IE
Sbjct: 819 IYVPETQGKTLEDIE 833

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Drosophila erecta (taxid: 7220)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     ++  F   KTF D+   IG HG F+++GS  + GL+++ 
Sbjct: 696 MGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVI 755

Query: 60  IWLPETEGKTLHEIE 74
           +++PET+GK+L +IE
Sbjct: 756 VYVPETQGKSLEDIE 770

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B4QBN2|TRE11_DROSI Facilitated trehalose transporter Tret1-1 OS=Drosophila simulans GN=Tret1-1 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +V    +   F   KTF DL   +G HG F+L+G+    GL ++ 
Sbjct: 760 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTGAMGAHGAFWLFGAICFVGLFFVI 819

Query: 60  IWLPETEGKTLHEIE 74
           I++PET+GKTL +IE
Sbjct: 820 IYVPETQGKTLEDIE 834

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila simulans (taxid: 7240)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     +   F   KTF DL + +G HG F+L+G+    GL ++ 
Sbjct: 760 MGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 819

Query: 60  IWLPETEGKTLHEIE 74
           I++PET+GKTL +IE
Sbjct: 820 IYVPETQGKTLEDIE 834

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     +   F   KTF DL + +G HG F+L+G+    GL ++ 
Sbjct: 760 MGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 819

Query: 60  IWLPETEGKTLHEIE 74
           I++PET+GKTL +IE
Sbjct: 820 IYVPETQGKTLEDIE 834

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     ++  F   KTF D+   IG HG F+++GS  V GL+++ 
Sbjct: 420 MGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVI 479

Query: 60  IWLPETEGKTLHEIE 74
           +++PET+GK+L +IE
Sbjct: 480 MYVPETQGKSLEDIE 494

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +  +  +   F   KTF DL   +G HG F+L+G+    GL ++ 
Sbjct: 759 MGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVI 818

Query: 60  IWLPETEGKTLHEIE 74
           +++PET+GKTL +IE
Sbjct: 819 LYVPETQGKTLEDIE 833

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +V    +   F   KTF DL + +G HG F+L+G+  + GL ++ 
Sbjct: 392 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVI 451

Query: 60  IWLPETEGKTLHEIE 74
           I++PET GK+L EIE
Sbjct: 452 IFVPETRGKSLEEIE 466

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +     ++  F   KTF D+   IG HG F+++GS  V GL ++ 
Sbjct: 709 MGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVI 768

Query: 60  IWLPETEGKTLHEIE 74
            ++PET+GK+L +IE
Sbjct: 769 FYVPETQGKSLEDIE 783

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           MG I+P K RG A+ +V    +   F   KTF DL + +G HG F+L+G   + GL ++ 
Sbjct: 392 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVI 451

Query: 60  IWLPETEGKTLHEIE 74
           I++PET GK+L EIE
Sbjct: 452 IYVPETRGKSLEEIE 466

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
193669080	515	PREDICTED: facilitated trehalose transpo	0.875	0.149	0.493	4e-13
242013039	490	conserved hypothetical protein [Pediculu	0.943	0.169	0.464	1e-12
170043906	566	sugar transporter [Culex quinquefasciatu	0.909	0.141	0.4	2e-12
157125518	570	sugar transporter [Aedes aegypti] gi|108	0.909	0.140	0.4	4e-12
242003132	387	conserved hypothetical protein [Pediculu	0.931	0.211	0.439	8e-12
193669064	494	PREDICTED: facilitated trehalose transpo	0.943	0.168	0.440	1e-11
193664559	530	PREDICTED: facilitated trehalose transpo	0.795	0.132	0.507	2e-11
242020658	545	conserved hypothetical protein [Pediculu	0.852	0.137	0.493	2e-11
350397791	541	PREDICTED: facilitated trehalose transpo	0.909	0.147	0.456	4e-11
340724392	541	PREDICTED: facilitated trehalose transpo	0.909	0.147	0.456	5e-11

>gi|193669080|ref|XP_001943832.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 52/77 (67%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66
           +GRG ASG  A   Y +AF  +KT+L+L   + L+G FFLYG  +  G+I++Y  LPETE
Sbjct: 439 RGRGEASGACAATFYIIAFLVSKTWLNLQSSVELYGCFFLYGILAAIGIIFVYKCLPETE 498

Query: 67  GKTLHEIELHFKQKKSK 83
           GKTL EIE +F +K  +
Sbjct: 499 GKTLAEIEKNFTKKNVR 515

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013039|ref|XP_002427227.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511535|gb|EEB14489.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 1   MGNIIPKG-RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           +G + P   RG A+GL    AY   F   K + D+   +  +GVFF YG+ SVFG I++ 
Sbjct: 402 IGEVFPSDVRGFAAGLTVCFAYIFNFIIVKAYSDMRDALSSYGVFFFYGAFSVFGTIFVV 461

Query: 60  IWLPETEGKTLHEIELHFKQKKSK 83
           ++LPET+GKTL EIE +F +KKSK
Sbjct: 462 LFLPETQGKTLLEIEEYFSRKKSK 485

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043906|ref|XP_001849608.1| sugar transporter [Culex quinquefasciatus] gi|167867183|gb|EDS30566.1| sugar transporter [Culex quinquefasciatus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66
           K R +A G+ A + YA+ F T KT+ +L   + L GV   YG C   G++++Y +LPETE
Sbjct: 453 KSRSMACGITAALNYAMTFVTTKTYFNLESSLSLPGVILFYGICGCIGVLFVYFFLPETE 512

Query: 67  GKTLHEIELHFKQKKSKVVQ 86
            +TL +IE++F   K K+  
Sbjct: 513 KRTLEDIEIYFSDNKRKLTD 532

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125518|ref|XP_001654366.1| sugar transporter [Aedes aegypti] gi|108873601|gb|EAT37826.1| AAEL010219-PA [Aedes aegypti]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66
           K R +A G+ A + YA+ F T KT+ +L     L GV   YG C   G++++Y +LPETE
Sbjct: 453 KNRSLACGITAALNYAMTFVTTKTYFNLESSFSLPGVIMFYGICGAIGVLFVYFFLPETE 512

Query: 67  GKTLHEIELHFKQKKSKVVQ 86
            +TL +IEL+F     K+  
Sbjct: 513 KRTLEDIELYFSDNNRKLTD 532

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003132|ref|XP_002422622.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505423|gb|EEB09884.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66
           KGRGIASG+VA ++Y  AF   KT+  L     L G F  +G C+  G ++LY++LPETE
Sbjct: 291 KGRGIASGVVAAISYIQAFVFIKTYYSLQYSFSLAGAFGFFGLCAALGSVFLYVFLPETE 350

Query: 67  GKTLHEIELHFKQKKSKVVQDA 88
           GKTL+ IE   +   + + Q  
Sbjct: 351 GKTLNCIETDLENHFNNLFQKC 372

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669064|ref|XP_001942711.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           M  I P K + + +GL +   + L+F   K +LDL M  G +  F L+GS  + GL+YL+
Sbjct: 403 MCEIFPMKSKNVGAGLSSATYFILSFLMTKFYLDLEMFTGFYNTFVLFGSIGLIGLVYLH 462

Query: 60  IWLPETEGKTLHEIELHFKQKKSK 83
             LPETE KTL+EI  HFK K +K
Sbjct: 463 FQLPETENKTLNEISEHFKCKNTK 486

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664559|ref|XP_001946897.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 7   KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE 66
           KGRGIASGL A +A+ + F   K FL++     L G+F +YGS ++ G +YLY  +PETE
Sbjct: 446 KGRGIASGLTAALAFLMTFILTKFFLEMQEWFTLPGLFIVYGSITLVGTLYLYACMPETE 505

Query: 67  GKTLHEIELHF 77
            KTL +IE HF
Sbjct: 506 NKTLQDIE-HF 515

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020658|ref|XP_002430769.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515966|gb|EEB18031.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 45/75 (60%)

Query: 6   PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65
           P+ RG ASG  A+V Y L FA+ KTF  L   +   GV++LY  C +   +  Y  LPET
Sbjct: 439 PEVRGFASGASASVGYILGFASNKTFFSLINLLTFPGVYWLYSVCGLIATVIFYFLLPET 498

Query: 66  EGKTLHEIELHFKQK 80
           EG TLHEIE HF  K
Sbjct: 499 EGWTLHEIEDHFAGK 513

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397791|ref|XP_003484994.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus impatiens]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           +G + P + RGI  GL    A++  F   KT+  L   I  HG F LYG  S+FG IY Y
Sbjct: 435 IGEVYPTQVRGIIGGLTTMAAHSFIFTVVKTYPFLASSITRHGTFILYGCISLFGTIYFY 494

Query: 60  IWLPETEGKTLHEIELHFKQK 80
           + LPET+GKTL EIE +F  +
Sbjct: 495 LCLPETKGKTLQEIEDYFSGR 515

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724392|ref|XP_003400566.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 1   MGNIIP-KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
           +G + P + RGI  GL    A++  F   KT+  L   I  HG F LYG  S+FG IY Y
Sbjct: 435 IGEVYPTQVRGIIGGLTTMAAHSFIFTVVKTYPFLASSITRHGTFILYGCISLFGTIYFY 494

Query: 60  IWLPETEGKTLHEIELHFKQK 80
           + LPET+GKTL EIE +F  +
Sbjct: 495 LCLPETKGKTLQEIEDYFSGR 515

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.840	0.143	0.36	6e-08
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.840	0.093	0.346	1.4e-07
FB|FBgn0033644	488	Tret1-2 "Trehalose transporter	0.840	0.151	0.373	1.5e-07
UNIPROTKB|B3NSE1	856	Tret1 "Facilitated trehalose t	0.840	0.086	0.373	1.5e-07
FB|FBgn0050035	857	Tret1-1 "Trehalose transporter	0.840	0.086	0.373	2e-07
UNIPROTKB|B4HNS0	857	Tret1-1 "Facilitated trehalose	0.840	0.086	0.373	2e-07
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.840	0.091	0.36	3.8e-07
UNIPROTKB|B4HNS1	488	Tret1-2 "Facilitated trehalose	0.840	0.151	0.373	4e-07
UNIPROTKB|B4P624	856	Tret1 "Facilitated trehalose t	0.840	0.086	0.36	5.3e-07
UNIPROTKB|B4QBN3	488	Tret1-2 "Facilitated trehalose	0.840	0.151	0.373	6.6e-07

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 133 (51.9 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 27/75 (36%), Positives = 42/75 (56%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   D+   IG HG F+++GS  V GL+++ 
Sbjct:   420 MGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVI 479

Query:    60 IWLPETEGKTLHEIE 74
             +++PET+GK+L +IE
Sbjct:   480 MYVPETQGKSLEDIE 494

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 132 (51.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   D+   IG HG F+++GS  + GL+++ 
Sbjct:   696 MGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVI 755

Query:    60 IWLPETEGKTLHEIE 74
             +++PET+GK+L +IE
Sbjct:   756 VYVPETQGKSLEDIE 770

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 28/75 (37%), Positives = 41/75 (54%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G+  + GL ++ 
Sbjct:   392 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICIVGLFFVI 451

Query:    60 IWLPETEGKTLHEIE 74
             I++PET GK+L EIE
Sbjct:   452 IFVPETRGKSLEEIE 466

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0005353 "fructose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)]

 Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 28/75 (37%), Positives = 41/75 (54%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G+    GL ++ 
Sbjct:   759 MGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 818

Query:    60 IWLPETEGKTLHEIE 74
             I++PET+GKTL +IE
Sbjct:   819 IYVPETQGKTLEDIE 833

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 28/75 (37%), Positives = 41/75 (54%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G+    GL ++ 
Sbjct:   760 MGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 819

Query:    60 IWLPETEGKTLHEIE 74
             I++PET+GKTL +IE
Sbjct:   820 IYVPETQGKTLEDIE 834

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015771 "trehalose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)]

 Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 28/75 (37%), Positives = 41/75 (54%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G+    GL ++ 
Sbjct:   760 MGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVI 819

Query:    60 IWLPETEGKTLHEIE 74
             I++PET+GKTL +IE
Sbjct:   820 IYVPETQGKTLEDIE 834

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 128 (50.1 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 27/75 (36%), Positives = 40/75 (53%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   D+   IG HG F+++GS  V GL ++ 
Sbjct:   709 MGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVI 768

Query:    60 IWLPETEGKTLHEIE 74
              ++PET+GK+L +IE
Sbjct:   769 FYVPETQGKSLEDIE 783

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)]

 Score = 125 (49.1 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 28/75 (37%), Positives = 40/75 (53%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G   + GL ++ 
Sbjct:   392 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGVVCIVGLFFVI 451

Query:    60 IWLPETEGKTLHEIE 74
             I++PET GK+L EIE
Sbjct:   452 IYVPETRGKSLEEIE 466

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)]

 Score = 127 (49.8 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 27/75 (36%), Positives = 40/75 (53%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL   +G HG F+L+G+    GL ++ 
Sbjct:   759 MGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAICFVGLFFVI 818

Query:    60 IWLPETEGKTLHEIE 74
             +++PET+GKTL +IE
Sbjct:   819 LYVPETQGKTLEDIE 833

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)]

 Score = 123 (48.4 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%)

Query:     1 MGNIIP-KGRGIASGXXXXXXXXXXXXXXXXXXDLHMRIGLHGVFFLYGSCSVFGLIYLY 59
             MG I+P K RG A+                   DL + +G HG F+L+G   + GL ++ 
Sbjct:   392 MGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGVVCIVGLFFVI 451

Query:    60 IWLPETEGKTLHEIE 74
             I +PET GK+L EIE
Sbjct:   452 ICVPETRGKSLEEIE 466

GO:0044459 "plasma membrane part" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 6   PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65
              R     +     +   F     F  +   IG+ GVF  +G  +V GLI++Y +LPET
Sbjct: 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473

Query: 66  EGKTLHEI 73
           +G+TL EI
Sbjct: 474 KGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 6   PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET 65
              R  A  +     +   F     F  +   IG   VF ++    V  +++++ ++PET
Sbjct: 379 LGVRPKAMAIATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPET 437

Query: 66  EGKTLHEIE 74
           +G+TL EI+
Sbjct: 438 KGRTLEEID 446

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 27/40 (67%)

Query: 44  FFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQKKSK 83
           +++YG   V   ++++ ++PET+GKTL E+E  ++ +  K
Sbjct: 439 YWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETKK 478

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG0569|consensus	485		99.65
KOG0254|consensus	513		99.4
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.38
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.35
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.33
KOG0252|consensus	538		99.21
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.85
TIGR00898	505	2A0119 cation transport protein.	98.63
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.63
PRK10489	417	enterobactin exporter EntS; Provisional	98.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.49
KOG0253|consensus	528		98.45
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.35
TIGR00893	399	2A0114 d-galactonate transporter.	98.33
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.27
PRK10642	490	proline/glycine betaine transporter; Provisional	98.25
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.23
PRK03545	390	putative arabinose transporter; Provisional	98.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.21
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.19
PRK11663	434	regulatory protein UhpC; Provisional	98.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.17
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.14
PRK11663	434	regulatory protein UhpC; Provisional	98.12
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.05
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.03
PRK10091	382	MFS transport protein AraJ; Provisional	98.02
TIGR00895	398	2A0115 benzoate transport.	97.98
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.93
TIGR00901	356	2A0125 AmpG-related permease.	97.93
KOG2532|consensus	466		97.92
PRK09874	408	drug efflux system protein MdtG; Provisional	97.92
PLN00028	476	nitrate transmembrane transporter; Provisional	97.91
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.88
KOG0255|consensus	521		97.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.88
TIGR00900	365	2A0121 H+ Antiporter protein.	97.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.84
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.77
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.75
PRK11010	491	ampG muropeptide transporter; Validated	97.73
PRK10504	471	putative transporter; Provisional	97.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.71
PRK12307	426	putative sialic acid transporter; Provisional	97.66
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.66
PRK12382	392	putative transporter; Provisional	97.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.64
KOG0255|consensus	521		97.64
PRK09705	393	cynX putative cyanate transporter; Provisional	97.64
TIGR00891	405	2A0112 putative sialic acid transporter.	97.64
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.63
PRK10054	395	putative transporter; Provisional	97.63
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.61
TIGR00893	399	2A0114 d-galactonate transporter.	97.6
PRK05122	399	major facilitator superfamily transporter; Provisi	97.59
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.56
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.55
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.54
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.54
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.53
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.5
PRK03893	496	putative sialic acid transporter; Provisional	97.49
KOG1330|consensus	493		97.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.47
PRK11043	401	putative transporter; Provisional	97.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.43
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.39
PRK11902	402	ampG muropeptide transporter; Reviewed	97.37
PRK09952	438	shikimate transporter; Provisional	97.37
PRK10642	490	proline/glycine betaine transporter; Provisional	97.36
PRK03545	390	putative arabinose transporter; Provisional	97.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.34
KOG2533|consensus	495		97.33
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.31
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.3
PRK10489	417	enterobactin exporter EntS; Provisional	97.29
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.29
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.27
PRK12307	426	putative sialic acid transporter; Provisional	97.27
PRK09528	420	lacY galactoside permease; Reviewed	97.27
PRK15011	393	sugar efflux transporter B; Provisional	97.22
TIGR00898	505	2A0119 cation transport protein.	97.19
PRK03893	496	putative sialic acid transporter; Provisional	97.18
PRK15075	434	citrate-proton symporter; Provisional	97.17
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.16
KOG2816|consensus	463		97.14
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.14
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.1
PRK15075	434	citrate-proton symporter; Provisional	97.04
PRK15011	393	sugar efflux transporter B; Provisional	97.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.0
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.95
PRK03699	394	putative transporter; Provisional	96.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.93
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.92
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.88
PRK09874	408	drug efflux system protein MdtG; Provisional	96.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.83
KOG3764|consensus	464		96.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.79
KOG0254|consensus	513		96.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.78
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.76
KOG2504|consensus	509		96.63
PF13347	428	MFS_2: MFS/sugar transport protein	96.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.57
PRK12382	392	putative transporter; Provisional	96.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.52
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.43
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.43
PRK09705	393	cynX putative cyanate transporter; Provisional	96.39
PRK09952	438	shikimate transporter; Provisional	96.36
PTZ00207	591	hypothetical protein; Provisional	96.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.29
PRK11010	491	ampG muropeptide transporter; Validated	96.21
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.11
TIGR00805	633	oat sodium-independent organic anion transporter.	96.05
PRK05122	399	major facilitator superfamily transporter; Provisi	96.04
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.02
PRK11462	460	putative transporter; Provisional	96.0
PRK09669	444	putative symporter YagG; Provisional	95.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.85
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.74
TIGR00891	405	2A0112 putative sialic acid transporter.	95.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.61
KOG2615|consensus	451		95.58
PRK03633	381	putative MFS family transporter protein; Provision	95.57
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.28
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.25
PRK09528	420	lacY galactoside permease; Reviewed	95.12
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.07
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.0
KOG0569|consensus	485		94.94
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	94.92
COG2211	467	MelB Na+/melibiose symporter and related transport	94.75
PRK03699	394	putative transporter; Provisional	94.7
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.54
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.32
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	94.14
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	94.12
PRK11902	402	ampG muropeptide transporter; Reviewed	94.07
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.01
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	93.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.91
PLN00028	476	nitrate transmembrane transporter; Provisional	93.79
PRK10504	471	putative transporter; Provisional	93.63
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	93.3
PRK10054	395	putative transporter; Provisional	93.11
PRK11646	400	multidrug resistance protein MdtH; Provisional	93.0
TIGR00900	365	2A0121 H+ Antiporter protein.	92.45
PRK10091	382	MFS transport protein AraJ; Provisional	92.36
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.36
KOG3762|consensus	618		92.17
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	91.96
PRK10429	473	melibiose:sodium symporter; Provisional	91.69
PRK09848	448	glucuronide transporter; Provisional	91.65
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	91.46
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	90.54
PRK03633	381	putative MFS family transporter protein; Provision	89.87
PRK09584	500	tppB putative tripeptide transporter permease; Rev	89.61
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	89.54
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	89.36
PRK10133	438	L-fucose transporter; Provisional	89.23
PRK10429	473	melibiose:sodium symporter; Provisional	89.22
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.01
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	88.85
TIGR00895	398	2A0115 benzoate transport.	88.14
KOG2532|consensus	466		87.44
KOG2325|consensus	488		87.39
PRK15403	413	multidrug efflux system protein MdtM; Provisional	86.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	86.75
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	85.7
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	85.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	85.53
PRK11462	460	putative transporter; Provisional	85.47
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	85.4
PRK11043	401	putative transporter; Provisional	84.83
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	84.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	84.3
PRK10213	394	nepI ribonucleoside transporter; Reviewed	83.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	83.52
PRK09669	444	putative symporter YagG; Provisional	82.41
COG2270	438	Permeases of the major facilitator superfamily [Ge	81.06
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	80.83

>KOG0569|consensus

Probab=99.65  E-value=1.4e-15  Score=99.28  Aligned_cols=78  Identities=31%  Similarity=0.447  Sum_probs=74.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhcC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHFKQK   80 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~   80 (88)
                      +|+| +..|+.+++++...+|+.++++.+.+|++.+.+|. ..|.+|++.+++..++.++++||||||+.+|+.+.++++
T Consensus       394 aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  394 AELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            7999 99999999999999999999999999999999996 799999999999999999999999999999998887655

>KOG0254|consensus

Probab=99.40  E-value=2.6e-12  Score=84.63  Aligned_cols=81  Identities=26%  Similarity=0.484  Sum_probs=72.4

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHhccCCCCCHHHHHHHHh
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI-YLYIWLPETEGKTLHEIELHFK   78 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~   78 (88)
                      ++|+| .++|+++.+++..++|+.++++...++.+....+....|.+|++.+.+... +.++++||||++++||+++.+.
T Consensus       420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            47999 999999999999999999999999999988886545688888888888888 8999999999999999999876


Q ss_pred             cCc
Q psy7005          79 QKK   81 (88)
Q Consensus        79 ~~~   81 (88)
                      +..
T Consensus       500 ~~~  502 (513)
T KOG0254|consen  500 EGI  502 (513)
T ss_pred             cCC
Confidence            554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.38  E-value=1.3e-14  Score=93.36  Aligned_cols=77  Identities=32%  Similarity=0.553  Sum_probs=70.6

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIELHF   77 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~   77 (88)
                      .+|+| +++|+++.+++...+|+++++.++++|++.+..+....++++++++.+..++.++++||||++++||+++.+
T Consensus       374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            37999 999999999999999999999999999998887745688999999999999999999999999999998864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.35  E-value=2.6e-12  Score=84.23  Aligned_cols=73  Identities=27%  Similarity=0.424  Sum_probs=62.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------IGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      +|++ ++.|+++.|++...+++++++.++++|++.+.          .+....+++++++++++.++ ++++|||+++++
T Consensus       418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~l  496 (502)
T TIGR00887       418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSL  496 (502)
T ss_pred             hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCH
Confidence            6999 99999999999999999999999999998874          33345788888888887665 467899999999


Q ss_pred             HHHHH
Q psy7005          71 HEIEL   75 (88)
Q Consensus        71 ~~~~~   75 (88)
                      ||+|+
T Consensus       497 eei~~  501 (502)
T TIGR00887       497 EELSG  501 (502)
T ss_pred             HhhhC
Confidence            98864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.33  E-value=1.5e-11  Score=79.69  Aligned_cols=81  Identities=22%  Similarity=0.444  Sum_probs=70.5

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLH------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEI   73 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~   73 (88)
                      ++|++ ++.|++++|+....+++++++.++++|.+.      +..++++.++++++.+++..++.+++.||||+++.||+
T Consensus       389 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  468 (479)
T PRK10077        389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM  468 (479)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence            36899 999999999999999999999999998655      35677788999999888888888888999999999999


Q ss_pred             HHHHhcCc
Q psy7005          74 ELHFKQKK   81 (88)
Q Consensus        74 ~~~~~~~~   81 (88)
                      ++.++++.
T Consensus       469 ~~~~~~~~  476 (479)
T PRK10077        469 EALWEPET  476 (479)
T ss_pred             HHHHhhcc
Confidence            88886544

>KOG0252|consensus

Probab=99.21  E-value=2.1e-11  Score=79.40  Aligned_cols=75  Identities=32%  Similarity=0.545  Sum_probs=67.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-----RIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL   75 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~   75 (88)
                      +|+| +++|+++.|++.+++.+++++..+.+.++.+     ..+.+++++++++++.+..++. +++|||+++++||+++
T Consensus       432 aE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~  510 (538)
T KOG0252|consen  432 AEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISN  510 (538)
T ss_pred             hhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcC
Confidence            7999 9999999999999999999999999999999     7888899999999998886655 5689999999999866


Q ss_pred             HH
Q psy7005          76 HF   77 (88)
Q Consensus        76 ~~   77 (88)
                      +.
T Consensus       511 e~  512 (538)
T KOG0252|consen  511 EE  512 (538)
T ss_pred             hh
Confidence            54

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.85  E-value=1.1e-08  Score=65.58  Aligned_cols=71  Identities=32%  Similarity=0.614  Sum_probs=64.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHE   72 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   72 (88)
                      +|++ ++.|++++++......+++++.+.+.+.+.+..+|.+.|+++++++++..+..+++.||+|+++.++
T Consensus       409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            6889 9999999999999999999999999999999889988899999999998888888899999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=98.63  E-value=1.5e-07  Score=61.74  Aligned_cols=68  Identities=22%  Similarity=0.296  Sum_probs=55.4

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH   71 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   71 (88)
                      .+|++ ++.|++++|+....+++++++.|++.+ + ...++..+++++++..++..+.. +++|||++++++
T Consensus       435 ~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       435 TAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             hcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence            36999 999999999999999999999999887 3 34455667888888777776654 578999998764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.63  E-value=2e-07  Score=64.38  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      +|++ ++.|++++|++...+.+++++.|++.+.+.+. +...+++++++..+++.+.. .++|||+++.+
T Consensus       674 aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l  741 (742)
T TIGR01299       674 VELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQVL  741 (742)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence            6899 99999999999999999999999999887764 34457777777776665554 46799998753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.53  E-value=3e-07  Score=59.08  Aligned_cols=74  Identities=14%  Similarity=-0.074  Sum_probs=64.4

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL   75 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~   75 (88)
                      .|.. .+.|+++.|+....+.++..+.+.+.+.+.+..|....+++++....+..+..+..+|++|+++.+|+++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            3567 7889999999999999999999999999999989887888888887787777888899999988887654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.49  E-value=7.4e-07  Score=48.42  Aligned_cols=64  Identities=25%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .|.+ .+.|+++.++....+.++..+.+.+.+.+.+..+|++.+++.+....+..+..++..|||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            4677 889999999999999999999999999998888998889888888888888777777775

>KOG0253|consensus

Probab=98.45  E-value=2.4e-07  Score=59.94  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      .|+| +.+|++|.|.+...+++++++.|++.  +....+...+..+|+.+++++.+...++--||||+++
T Consensus       460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             CcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            5999 99999999999999999999999998  4444454568889999999999998888889999864

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.38  E-value=3.8e-06  Score=53.81  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++++++....+.++..+.+.+.+.+.+..|||+.|++.+...++..+..++++||+.
T Consensus       104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4667 8999999999999999999999999999988899999999988888888888888899864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.35  E-value=5e-06  Score=53.78  Aligned_cols=66  Identities=9%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.|++.++..++..+..++.+||++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            4678 88899999999999999999999988888888899999999988888887776777899754

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.33  E-value=2.9e-06  Score=53.12  Aligned_cols=67  Identities=9%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+..++..||++.+
T Consensus       108 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (399)
T TIGR00893       108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK  175 (399)
T ss_pred             HHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc
Confidence            5778 899999999999999999999999999888889999999988888887777777777776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.27  E-value=6e-06  Score=52.10  Aligned_cols=67  Identities=12%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+..++..||++..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            4677 889999999999999999999999999888889999999988888888877777778887644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.25  E-value=2.5e-06  Score=56.20  Aligned_cols=68  Identities=19%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      +|++ ++.|++++|+....+++++.+.+++.+++.+..+ |+.++++....+++..+ ..+++|||++...
T Consensus       368 ~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~  437 (490)
T PRK10642        368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL  437 (490)
T ss_pred             HHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence            4788 9999999999988899999999999998887654 45555555555555544 4456799976543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.23  E-value=1.3e-05  Score=50.63  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+++||++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            4677 8899999999999999999999999998888889999999888888887777777788864

>PRK03545 putative arabinose transporter; Provisional

Probab=98.21  E-value=1.3e-05  Score=51.22  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=56.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|++++|+....+.++..+.+.+...+.+..||++.|++.+...++..+..+..+||.+.
T Consensus       123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~  189 (390)
T PRK03545        123 IRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS  189 (390)
T ss_pred             HHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4667 88999999999999999999999999888888999999999998888877777777777543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.21  E-value=6.6e-06  Score=54.37  Aligned_cols=62  Identities=19%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      .+.|++++|+......++..+.|.+.+.+.+..+|+|.|++...+.++..+...+++||.++
T Consensus       126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        126 EKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            57899999999999999999999999999999999999999988888888888888888644

>TIGR00889 2A0110 nucleoside transporter

Probab=98.19  E-value=1.5e-05  Score=51.75  Aligned_cols=67  Identities=7%  Similarity=0.055  Sum_probs=56.6

Q ss_pred             Cccc-hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVA-TVAYALAFATAKTFLDLHMRI------GLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|++++|+.. ..+.+++.+.+.+.+.+.+..      ||+..|.+.+.+.++..+..++++||+++.
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5678 899999999997 556789999999999998884      578888888888888888888999988543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.18  E-value=5.9e-06  Score=53.66  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|++++|+....+.++..+.|..++.+.+..||...+...+++..+..+..+++.++.+++
T Consensus       363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            5778 899999999999999999999999999999999998888888888888777776666665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.17  E-value=1.7e-05  Score=50.58  Aligned_cols=67  Identities=10%  Similarity=0.180  Sum_probs=56.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+...++..++..+++||++..
T Consensus       117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            4677 899999999999998888888888888777788999999999888888888777788887543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.17  E-value=1.7e-06  Score=56.37  Aligned_cols=67  Identities=13%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++.+...++..+...+.+||++.+
T Consensus       116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  183 (485)
T TIGR00711       116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA  183 (485)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence            4778 899999999999999999999999999998889999999998888888777777778876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.16  E-value=2e-05  Score=50.67  Aligned_cols=66  Identities=18%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++.+...++..++.....||+++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            4778 89999999999999999999999999999999999999998887777766666666788643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.16  E-value=3.2e-05  Score=51.20  Aligned_cols=63  Identities=17%  Similarity=0.073  Sum_probs=45.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhchHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-----------------------RIGLHGVFFLYGSCSVFGLIY   57 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~   57 (88)
                      +|.+ .+.|++++++......++..+.+.+...+..                       ..+||+.+.+-+...++ ..+
T Consensus       141 ~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~  219 (502)
T TIGR00887       141 SEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALY  219 (502)
T ss_pred             HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHH
Confidence            6889 9999999999998888888777766654332                       13699887555544444 444


Q ss_pred             HHHHhccC
Q psy7005          58 LYIWLPET   65 (88)
Q Consensus        58 ~~~~~pet   65 (88)
                      ..+++||+
T Consensus       220 ~~~~lpES  227 (502)
T TIGR00887       220 FRLTIPET  227 (502)
T ss_pred             HHHhCCCC
Confidence            55789998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.14  E-value=1.6e-05  Score=51.49  Aligned_cols=66  Identities=17%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM------RIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|++++++......++..+.+.+.+.+.+      ..||++.|++.+...++.....++++||++.
T Consensus       122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            5678 8899999999999888889888888877764      3589999999888888777777788899864

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.12  E-value=2.2e-05  Score=51.06  Aligned_cols=64  Identities=11%  Similarity=0.017  Sum_probs=53.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ .+.|++++++....+.++..+.+.+.+.+.+..+|++.+++.+...++..++..+.+||+
T Consensus       137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4677 889999999999999999999999999888889999999888877766666556667765

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.05  E-value=3.7e-05  Score=49.97  Aligned_cols=62  Identities=23%  Similarity=0.259  Sum_probs=57.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      +++. .+.|++++++.....-+...++..+..++-+.+|||++|+..+....+..+..+..+|
T Consensus       127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3567 8899999999999999999999999999999999999999999999999999999999

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.03  E-value=3.9e-05  Score=49.24  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      .|.+ .+.|.++.++......++..+.+.+...+.+..+|++.+++.++..++..+..++.+||++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            4667 78888888888888888888888888888888899999999888888887777777898754

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.02  E-value=3.8e-05  Score=49.06  Aligned_cols=66  Identities=17%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|++++++......++..+.+.+...+.+..+|++.|++.+....+..+..++.+||.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            3566 77889999998888888888888888888888899999999888877777777777898654

>TIGR00895 2A0115 benzoate transport

Probab=97.98  E-value=1.2e-05  Score=50.70  Aligned_cols=66  Identities=23%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+.....+.++||+..
T Consensus       131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            4677 88999999999999999999999999999888899988888877777777777778888743

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.93  E-value=0.0001  Score=48.16  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccCC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFA-TAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPETE   66 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~   66 (88)
                      |.+ .+.|+++.|+......+++.+ .+.+.+.+.+..|++..|++.+..++++.++.. ...+|+|
T Consensus       374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            677 889999999999988888765 689999999999998899888888777766654 3334433

>TIGR00901 2A0125 AmpG-related permease

Probab=97.93  E-value=8.1e-05  Score=46.90  Aligned_cols=66  Identities=17%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--------LHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|+.+.++......++..+.+.+...+....+        |+..|++.++...+..+..++..||++.
T Consensus       109 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~  183 (356)
T TIGR00901       109 LEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE  183 (356)
T ss_pred             HHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            5788 8999999999999999999999999888888888        9999988888777766665556788643

>KOG2532|consensus

Probab=97.92  E-value=0.00026  Score=47.03  Aligned_cols=73  Identities=14%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC----CCCCHHHHHHHHh
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET----EGKTLHEIELHFK   78 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet----~~~~~~~~~~~~~   78 (88)
                      ...|++..++.++...+++.+.-.+.+.+-+. +||+.+|+++++..++..+..+++.-|+    +..+.+|.+...+
T Consensus       159 ~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~  236 (466)
T KOG2532|consen  159 PNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEK  236 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHh
Confidence            67899999999999999999999999999988 9999999999999998888766655543    3334555555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.92  E-value=0.00014  Score=46.40  Aligned_cols=64  Identities=20%  Similarity=0.151  Sum_probs=54.5

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      |.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+++||+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        133 TQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             HhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            556 7889999999988888899999999998888889999999998888887777777788753

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.91  E-value=0.00011  Score=48.50  Aligned_cols=63  Identities=16%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---------RIGLHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      +|.+ .+.|+++.|+....+.++..+.+.+.|.+..         ..||++.|++.+++.++..+..+++.++
T Consensus       149 ~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        149 STMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            4678 8899999999988888888877777765533         1489999999988888777666555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.88  E-value=7.1e-05  Score=47.89  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+.+.++..+...+++||+.
T Consensus       129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            4778 8899999999999888888888888777777788998888888777777666667788864

>KOG0255|consensus

Probab=97.88  E-value=0.00018  Score=47.77  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH   71 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   71 (88)
                      +|++ +.+|..+.+.+...+.+++.+.+++...... ......+.+++....+.......++|||+++++.
T Consensus       432 ~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~  501 (521)
T KOG0255|consen  432 AELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLP  501 (521)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCc
Confidence            6899 9999999999999999999999988654433 3323333336667777777777899999999874

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.88  E-value=0.00017  Score=47.19  Aligned_cols=64  Identities=14%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ .+.|++++++......++..+.+.+.+.+.+. .+|++.|++.+...++..+..+.+.+|.
T Consensus       157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            5778 89999999999999999999999999988888 4999999998888877776666666654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.88  E-value=0.0002  Score=44.71  Aligned_cols=59  Identities=7%  Similarity=0.017  Sum_probs=49.4

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI   60 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (88)
                      +|++ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+..+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5788 8899999999999999999999999999988899998888877766665554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.88  E-value=8.1e-05  Score=48.43  Aligned_cols=65  Identities=9%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++++++......++..+.+.+...... ..+|++.|++.+..+++..+..++++||+.
T Consensus       144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             HHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            4678 8899999999988888888888877665444 468999999988888887777777788764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.85  E-value=1.4e-05  Score=49.69  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..++...++++++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  178 (352)
T PF07690_consen  111 ADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP  178 (352)
T ss_dssp             HHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred             cccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence            4677 789999999999999999999999999888888999999999999998877655566655433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.84  E-value=3.8e-05  Score=49.96  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALA-FATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .|.+ .+.|+++.|+....+++++ .+.|.+.+.+.+..|+.+.+.+..+..+++.+...+.+||.|
T Consensus       371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3677 8899999999998888875 578999999999889888998888888888888888899865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.77  E-value=0.0003  Score=45.44  Aligned_cols=64  Identities=20%  Similarity=0.023  Sum_probs=53.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .|.+ .+.|+++.|+......++..+.+.+.+.+. ..+|++.+++.+...++..+....++||.+
T Consensus       125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  189 (400)
T PRK11646        125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK  189 (400)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            4667 889999999999999999999999999888 679999998888777777666666677753

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.75  E-value=0.00012  Score=47.05  Aligned_cols=64  Identities=16%  Similarity=0.025  Sum_probs=48.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTF---LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++++++......++..+.+.+.   .......+|++.+++.+...++. +...+++||+.
T Consensus       153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence            5788 89999999999998888888888877   44445678998888855544444 44556788874

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.73  E-value=0.00026  Score=47.01  Aligned_cols=64  Identities=16%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++....+.++..+.+.+...+.+ ..||+..|++.+....+..+..+ ++||+.
T Consensus       133 ~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        133 TDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT  198 (491)
T ss_pred             HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            4778 8999999999999999999999988888888 47999999998887777655443 478874

>PRK10504 putative transporter; Provisional

Probab=97.71  E-value=0.00033  Score=45.82  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=54.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.|++....+.+..+......|+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4667 8889999999999889999999999999988899999999888877777777766677654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.71  E-value=0.00043  Score=44.27  Aligned_cols=66  Identities=12%  Similarity=0.061  Sum_probs=51.0

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      |.+ .+.|+.+.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...++.||++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  189 (394)
T PRK11652        123 DLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA  189 (394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence            456 677888888887777788888888888888888999999888777776666666778887543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.66  E-value=0.00016  Score=46.55  Aligned_cols=64  Identities=17%  Similarity=0.095  Sum_probs=47.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.... .+...+.....||++
T Consensus       132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~  196 (426)
T PRK12307        132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP-VLLVIYIRARAPESK  196 (426)
T ss_pred             HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH-HHHHHHHHHHCCCCh
Confidence            5778 899999999999988899999998888888888999888764333 222233333456653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.66  E-value=4.4e-05  Score=50.01  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=54.2

Q ss_pred             c-hhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           5 I-PKGRGIASGLVATVAYALAFATAKTF--LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         5 ~-~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      | .+.|++..|+....+++++.+.+.+.  ..+..+.+|+..|++=+++.++..++.++.++||.
T Consensus       146 fsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         146 FSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             cCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            6 78899999999999999999999999  78888889999999888888888888887776653

>PRK12382 putative transporter; Provisional

Probab=97.65  E-value=0.00045  Score=44.15  Aligned_cols=61  Identities=20%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWL   62 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      .|.+ .+.|+++.|+......++..+.+.+.+.+.+..||++.+.+.+...++..+..++..
T Consensus       328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            3567 889999999999999999999999999999999999899888888877777665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.64  E-value=0.00069  Score=44.28  Aligned_cols=65  Identities=15%  Similarity=0.066  Sum_probs=46.3

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|.+ .+.|++++++......++..+.+.+...+.        ...+|++.|++.+...++..+ ..+++||+.
T Consensus       145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~  218 (479)
T PRK10077        145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETP  218 (479)
T ss_pred             HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCc
Confidence            36889 999999999988777777666654433222        346899998887776666544 456789975

>KOG0255|consensus

Probab=97.64  E-value=0.00041  Score=46.15  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|++ ++.|+.+..+ ....|.++.+.+....++..  +||+.+++.+....+..++ ++..||++
T Consensus       196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            46999 9999999999 99999999999999888877  8999999888888877666 55566874

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.64  E-value=0.00083  Score=43.24  Aligned_cols=65  Identities=14%  Similarity=0.035  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      .+.|++..++....+.++..+.|.+.+.+.+..| +...+.+.+..+++..+..+.+.|||+++..
T Consensus       324 ~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        324 PAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            4678999999999999999999999999999876 5556677777777777777889999987653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.64  E-value=0.00046  Score=43.74  Aligned_cols=65  Identities=23%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--LHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      .|.+ .+.|+++.++......++..+.+.+.+.+.+..+  |++.+.+.+...++ .++....+||++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~  193 (405)
T TIGR00891       126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAED  193 (405)
T ss_pred             HHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCChh
Confidence            4677 8899999999999999999999998888877766  88877765444433 3444556788653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.63  E-value=2e-05  Score=49.32  Aligned_cols=65  Identities=11%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATA-KTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++......++..+.+ .....+....+|++.+++.+....+..+..+++.||++
T Consensus       109 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            5677 88899999999999999998888 45555666778998888888777777777777777764

>PRK10054 putative transporter; Provisional

Probab=97.63  E-value=0.00047  Score=44.45  Aligned_cols=64  Identities=20%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.. .+|+..|++.+....+..+...+++||++
T Consensus       122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4667 7789999999999999999999999887764 68888898888777777666666677664

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.61  E-value=0.00037  Score=45.76  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=47.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------HhchHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHM------------RIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      .|.+ .+.|+++.|+....+++ +.++.+.+.+.+.+            ..+|+..|+++.++.+++.+...
T Consensus       375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            3778 88999999999999997 66899999999988            56788888888777777655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.60  E-value=0.00025  Score=44.45  Aligned_cols=58  Identities=10%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   59 (88)
                      +|.+ .+.|++++|+......+++.+.+.+.+.+.+..| +.+.+++.+...+++.+..+
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            5778 8999999999999999999999999999999888 88788877777776665544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.59  E-value=0.00087  Score=42.90  Aligned_cols=64  Identities=17%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      |.+ .+.|+++.|+......++..+.+.+.+.+.+..|+++.+++.+...+++.+..++ +++.++
T Consensus       329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~  393 (399)
T PRK05122        329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAP  393 (399)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccc
Confidence            556 7889999999999999999999999999999889998888888877777665554 555444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.56  E-value=0.00026  Score=47.38  Aligned_cols=56  Identities=14%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIY   57 (88)
Q Consensus         2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (88)
                      +|+| ++  .|.++.++.++..++++++.|.+.+.+.+..||++.|.+.+...+++.+.
T Consensus       126 ~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence            5788 65  79999999999999999999999999999999998888766555444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.55  E-value=0.00052  Score=43.16  Aligned_cols=64  Identities=13%  Similarity=0.052  Sum_probs=45.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchHHHH-HHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------IGLHGVF-FLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ .+.|+++.++....+.++..+.+.+.+.+...          .+|++.+ +..+....+..+..+.+.+|+
T Consensus       116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            5677 88999999999888888888888887776653          3788887 444555555555555556654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.54  E-value=0.0015  Score=43.54  Aligned_cols=77  Identities=6%  Similarity=-0.000  Sum_probs=54.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------HhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH-----M-------------RIGLHGVFFLYGSCSVFGLIYLYIWL   62 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      ++.| .+.|+++.|+....+.++..+.+++.|.+.     .             ..+|+.+.++++...++..++.++++
T Consensus       153 s~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~  232 (462)
T PRK15034        153 SFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM  232 (462)
T ss_pred             HHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567 788999999998888888888888777644     2             23466677888888888888888777


Q ss_pred             ccCC--CCCHHHHHHHHh
Q psy7005          63 PETE--GKTLHEIELHFK   78 (88)
Q Consensus        63 pet~--~~~~~~~~~~~~   78 (88)
                      ++.+  ..+.++.-+.++
T Consensus       233 ~~~~~~~~~~~~~~~vlk  250 (462)
T PRK15034        233 NDIASSRASIADQLPVLQ  250 (462)
T ss_pred             CCccccccCHHHHHHHhC
Confidence            7754  223444433333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.54  E-value=0.00033  Score=44.99  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|++ ++.|+++.|+....+++++...+.+.+.+..  +....|.+++...++..+... ..++.
T Consensus       306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~-~~~~~  367 (368)
T TIGR00903       306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL-LLPND  367 (368)
T ss_pred             HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            6899 9999999999999999999999999987774  656688888888887777653 34553

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.53  E-value=0.00068  Score=44.39  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTF-LDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .|.+ .+.|++++|+......+++.+.+.+. ..+....+|++.|++.+..+++..++..+++||+.
T Consensus       146 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        146 VHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            3567 88999999998777777664444332 22333458999999888888887777778888864

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.50  E-value=0.001  Score=41.92  Aligned_cols=55  Identities=13%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005          13 SGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      .++....+.++..+.+.+.+.+.+..+|++.+++.+...++..+..++++||.+.
T Consensus       127 ~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       127 SSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            4555566677888888888888888899999999988888887777777888643

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.49  E-value=0.00061  Score=44.75  Aligned_cols=64  Identities=22%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .|.+ .+.|+++.++....+.++..+.+.+.+.+.+..+|++.+++.... ++..++....+||++
T Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~~  198 (496)
T PRK03893        134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFALWLRKNLPEAE  198 (496)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHhCCCch
Confidence            4677 889999999999999999999999999988889999887764333 333333445567653

>KOG1330|consensus

Probab=97.48  E-value=2.6e-06  Score=56.12  Aligned_cols=75  Identities=9%  Similarity=-0.057  Sum_probs=60.8

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIEL   75 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~   75 (88)
                      |+|+| ...|++++++.+....+++.++-....++.+..+ |||.++.-++..++..++..++++|.+....++.+.
T Consensus       146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~  222 (493)
T KOG1330|consen  146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG  222 (493)
T ss_pred             hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence            58999 9999999999999888887776666555555555 899999999999999999999999988665554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.47  E-value=0.00099  Score=43.80  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      .+.|+++.++....+.++..+.+.+.+.+.+..||++.|++.+++.++..+..++..|
T Consensus       138 ~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       138 YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5679999999999999999999999999999999999999998887776665554444

>PRK11043 putative transporter; Provisional

Probab=97.45  E-value=0.0019  Score=41.37  Aligned_cols=63  Identities=6%  Similarity=-0.075  Sum_probs=47.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ .+.|....+.......++..+.+.+.+.+.+..+|++.+++.+....+..+..++ ++|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  183 (401)
T PRK11043        120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKPS  183 (401)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence            4566 6777777888777777888888988888888899999888888777776655544 4443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.43  E-value=8.8e-05  Score=48.68  Aligned_cols=56  Identities=18%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFGLIY   57 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   57 (88)
                      .|.+ .+.|++++|+......++..+.+.+.+.+.+.. +|++.|++.++..+++.++
T Consensus       359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            3567 788999999999999999999999999888877 4777777777666665554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.43  E-value=0.00041  Score=45.10  Aligned_cols=66  Identities=20%  Similarity=0.270  Sum_probs=39.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHG-VFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      +|+| ++.|++++|++++.+++ .+...+++.. +.+..|+.. .+++.+...++..+..+ + .++++++.
T Consensus       362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~-~-l~~~~~~~  430 (432)
T PRK10406        362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL-M-LHRKGKGM  430 (432)
T ss_pred             HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH-H-hhhccccc
Confidence            5899 99999999999988775 3445666555 445445333 33333444444444333 3 45566654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.39  E-value=0.0005  Score=43.00  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG   54 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (88)
                      +|.+ .+.|+++.|+......++..+.+.+.+.+.+..||++.+.+.+.+.+++
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            4778 8999999999999999999999999999999999988887776666554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.37  E-value=0.0015  Score=42.02  Aligned_cols=65  Identities=20%  Similarity=0.346  Sum_probs=50.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|+++.++....+.++..+.+.+...+.+. .||+..|++.+....+.... .+++||++.
T Consensus       120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~  186 (402)
T PRK11902        120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEV  186 (402)
T ss_pred             HHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence            4677 78899999999988888888888888877775 49999998888776665443 456787643

>PRK09952 shikimate transporter; Provisional

Probab=97.37  E-value=0.0014  Score=42.80  Aligned_cols=64  Identities=13%  Similarity=0.028  Sum_probs=46.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRI--GLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|++ ++.|+++.++....+. +++.+.|++.+.+.+..  +|...+.+.+.+.+++.+.. +.++||+
T Consensus       369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~  436 (438)
T PRK09952        369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ  436 (438)
T ss_pred             HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence            5889 9999999999877765 78889999999988754  35555555555555554444 4567754

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.36  E-value=0.0011  Score=44.00  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++..++......++..+.+.+.+.+.        ...|||+.|++.+...++ .++....+||+.
T Consensus       144 ~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp  216 (490)
T PRK10642        144 AEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP  216 (490)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence            5788 899999988887666566655554443332        257999999886654444 334455788863

>PRK03545 putative arabinose transporter; Provisional

Probab=97.36  E-value=0.0021  Score=41.16  Aligned_cols=58  Identities=14%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      ++.|++++|+......++..+++.+.+.+.+..|++..+++.+.+..++.++.+....
T Consensus       324 ~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        324 PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            4578999999999999999999999999999999998998888888888887776653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.34  E-value=0.00083  Score=41.53  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      .|.. .+.|++.+|+....+.++..+.+.+.+.+.+..++++.+.+.+...++..+..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            4677 799999999999999999999999999999888998888888888887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2533|consensus

Probab=97.33  E-value=0.00012  Score=49.03  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           4 II-PKGRGIASGLVATVAYALAFATAKTFLDLH------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         4 ~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      -| .+.|++.+|+..+.+.+++++++++...+.      ...||+|.|.+-++++++..+++++++|+...
T Consensus       162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            46 788999999999999999999999988764      34689999999999999999999999999754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.31  E-value=0.0017  Score=40.59  Aligned_cols=60  Identities=17%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      ++.|+++.++......++..+.+.+...+.+..+|++.+++.+....+..+..++++++.
T Consensus       121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       121 PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            456999999988888788777777777777778999999998888888877777666554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.30  E-value=0.0011  Score=44.15  Aligned_cols=48  Identities=15%  Similarity=0.050  Sum_probs=40.7

Q ss_pred             Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy7005           2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGS   49 (88)
Q Consensus         2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (88)
                      +|.| .+  .|+.+.++.+...++++.+.+.+.|.+.++.||++.|++.++
T Consensus       131 ~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        131 SKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            5677 65  457789999999999999999999999999999988877543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.29  E-value=0.0041  Score=40.19  Aligned_cols=64  Identities=11%  Similarity=-0.016  Sum_probs=50.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .|.. .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+ ..+.+|+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  200 (417)
T PRK10489        136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALP  200 (417)
T ss_pred             hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence            4677 888999999999999999999999998888888998888776666555544 345677754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0017  Score=42.63  Aligned_cols=65  Identities=9%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG---LHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      ++-| .+.++.++|+.. .++++..+..++.|.+....+   |+.+..++....++..+..++.+.+...
T Consensus       130 s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         130 SFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             cccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            5668 899999999999 999999999999999999999   9999999999999988888887766543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.27  E-value=0.0018  Score=39.98  Aligned_cols=58  Identities=21%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+...++..+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4677 789999999999999999999999999999888899888887777766655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.27  E-value=0.0012  Score=42.52  Aligned_cols=64  Identities=17%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGV-FFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .|.+ .+.|++++|+....+++++.+.|.+.+.+.+..|.... +++.+..+........++.|++
T Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            5778 89999999999999999999999999999888875432 3333333444333333445654

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.27  E-value=0.00095  Score=43.17  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=49.2

Q ss_pred             Cccc-hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGL-VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ ++.|++..+. ......+++.+.+...+.+.+..||+..|.+.+.+.++..++.++.+++.
T Consensus       341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3556 7778877655 44567788889999999999999999899888888877777666666553

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.22  E-value=0.0056  Score=39.39  Aligned_cols=54  Identities=7%  Similarity=0.121  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005          14 GLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      ++....+.++..+.+.+...+.+..||+..|++.+...++..+..++++||.+.
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            566667778889999999888888999999988888888887777788898754

>TIGR00898 2A0119 cation transport protein

Probab=97.19  E-value=0.0042  Score=41.03  Aligned_cols=62  Identities=10%  Similarity=0.031  Sum_probs=44.4

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|.+ .+.|+.+.++......++..+.+.+...+.   +|++.+++.+...++..+.. +++||+.
T Consensus       205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~esp  267 (505)
T TIGR00898       205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPESP  267 (505)
T ss_pred             hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCCh
Confidence            46888 899999999986666666666665543332   38888888887777766655 6789863

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.18  E-value=0.00041  Score=45.56  Aligned_cols=63  Identities=13%  Similarity=0.088  Sum_probs=47.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHHHhcc
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGL-IYLYIWLPE   64 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pe   64 (88)
                      +|.+ .+.|++++|+....+.+++.+.+.+.+.+.+..|++..+.+.+..+.+.. +...+..|+
T Consensus       392 ~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (496)
T PRK03893        392 GGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS  456 (496)
T ss_pred             HhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            4677 88999999999999999999999999999999898877666554443333 334344454

>PRK15075 citrate-proton symporter; Provisional

Probab=97.17  E-value=0.0013  Score=42.86  Aligned_cols=70  Identities=16%  Similarity=0.006  Sum_probs=45.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH   71 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   71 (88)
                      +|.+ .+.|+++.++....+.. ++.+.|.+.+.+.+..|+.+...++.....+......+.+.+-++..++
T Consensus       357 ~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK15075        357 TEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQ  428 (434)
T ss_pred             HHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence            5788 89999999998776665 4888899999888888854332222222333333344556666655543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.16  E-value=0.0019  Score=41.40  Aligned_cols=59  Identities=14%  Similarity=-0.039  Sum_probs=43.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYI   60 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   60 (88)
                      +|.+ ++.|+++.|+....+.+++.+.+.+.+.+.+..+ +...++..+...+...+..+.
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        334 PLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            4678 8899999999999999999999999999887643 344454555455554444443

>KOG2816|consensus

Probab=97.14  E-value=0.005  Score=41.09  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLH   71 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   71 (88)
                      ++|+. .+.|..+.++...+-+.+..+++.......+..|...++++-++..++..++..+++||+...+.+
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            46788 889999999999999999999999999998888888889999999999999999999999766544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.14  E-value=0.0026  Score=46.01  Aligned_cols=64  Identities=8%  Similarity=-0.132  Sum_probs=50.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .+++ .+.|++++|+..+...++..+++.+.+.+....+|++.| +......+......+.+|+++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            5778 889999999999999999999999999999988998777 444444444455556677764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.10  E-value=0.0043  Score=43.60  Aligned_cols=63  Identities=10%  Similarity=0.019  Sum_probs=43.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-------------IGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|++ .+.|++.+++......++..+.+.+...+...             .+|++.+++.+... +..++..+++||+
T Consensus       281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~-ll~ll~~~~lPES  357 (742)
T TIGR01299       281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPES  357 (742)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH-HHHHHHHHHcCCC
Confidence            5788 89999999998888777777777655444432             25776666655544 4445566789998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.04  E-value=0.0044  Score=40.40  Aligned_cols=47  Identities=15%  Similarity=0.077  Sum_probs=34.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhchHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDL--------HMRIGLHGVFFLYG   48 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~   48 (88)
                      +|.+ .+.|++++++....++++..+.+.+.+.+        .+..||++.|++..
T Consensus       143 ~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        143 AEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            6888 99999999998887777766655554443        34679998887643

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.00  E-value=0.0069  Score=38.97  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      |++++.|++++++......++..+.+.+.+.+.+..+|+..+++.+...+++.+. .+++||+
T Consensus       332 ~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~  393 (393)
T PRK15011        332 DLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC-LLRIKDV  393 (393)
T ss_pred             HhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhhcCC
Confidence            4553358999999988889999999999999999889887777766666665444 4456664

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.00  E-value=0.0097  Score=38.48  Aligned_cols=65  Identities=20%  Similarity=0.121  Sum_probs=49.3

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHM-------RIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|+.  .+.|++..++......++..+.+.+.+++..       ..+|++.+.+.++...+..+..+++.||++
T Consensus       125 ~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       125 PAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            4554  5789999998888888888777776666554       346888888888888888777777888865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.96  E-value=0.015  Score=37.29  Aligned_cols=60  Identities=12%  Similarity=0.095  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .+.|+.+.+.......++..+.+.....+.+..||+..|++.+....+..+..++..|++
T Consensus       128 ~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       128 GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            333444555555555666677776666788889999999999888877766665554543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.95  E-value=0.0087  Score=38.66  Aligned_cols=63  Identities=8%  Similarity=0.030  Sum_probs=46.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|++ .+.|+++.|+......++..++|.+.+.+.+.. |+..+.+.+....+. .+..+++||.+
T Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            5788 899999999999999999999999998887753 555555544443333 34456788764

>PRK03699 putative transporter; Provisional

Probab=96.95  E-value=0.01  Score=38.12  Aligned_cols=57  Identities=16%  Similarity=-0.006  Sum_probs=43.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM-RIGLHGVFFLYGSCSVFGLIYL   58 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   58 (88)
                      +|.+ .+.|+.+.++......+++.+.+.+.+.+.. ..+|++.+.+.+...++..++.
T Consensus       121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            5677 7889999988877777788888888777654 4689999888877766655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.94  E-value=0.0017  Score=44.48  Aligned_cols=65  Identities=12%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPET   65 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet   65 (88)
                      ++|+. .+.|..+.++.....-...+..+.....+...-+|||.|+++.++..++++..+ ++.|.+
T Consensus       155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            46888 899988887776554444444555544444456899999999888887776543 344443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.93  E-value=0.0046  Score=40.28  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=41.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+...++.......+..+.+.+.+.+.        ...|||+.|++-+...++. .+....+||++
T Consensus       150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            5778 889999888876665555555555443332        2569998888766555544 33445577764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.92  E-value=0.0088  Score=39.13  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=46.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHH------HHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRIGLHG------VFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .+.. .+.|++++++...+.. ++..++.++.+.+.+..|.+.      .+.+.++...+..+..+++.+|++
T Consensus       327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            3556 7899999999887654 788888999999999877553      344455555555556666666654

>TIGR00897 2A0118 polyol permease family

Probab=96.88  E-value=0.013  Score=37.86  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      |+.++.|+++.|+......+++.+.|.+.+.+.+..|+...+++.+++.++..+...
T Consensus       342 ~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       342 TLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             hhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            333557999999999999999999999999999998988888888877766665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.88  E-value=0.0041  Score=39.73  Aligned_cols=59  Identities=12%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      .+.|++.+++......++..+.+.+.+.+.+..|+++.|++.++..++..++.++..++
T Consensus       342 ~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        342 NQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             cccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999998999989999888888887776655443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.83  E-value=0.0089  Score=40.02  Aligned_cols=64  Identities=11%  Similarity=-0.001  Sum_probs=45.2

Q ss_pred             Cccc-hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHHhccC
Q psy7005           2 GNII-PK--GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGL---IYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~pet   65 (88)
                      +|.| .+  .|..+.++.+....+++.+.+.+.+.+.+..||++.|.+.++...++.   ++....++|.
T Consensus       138 ~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        138 STCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             HHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence            3555 33  244578888899999999999999999999999998888765444433   2333445553

>KOG3764|consensus

Probab=96.80  E-value=0.00073  Score=44.42  Aligned_cols=68  Identities=12%  Similarity=0.037  Sum_probs=59.7

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKT   69 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   69 (88)
                      ++.|  .+.|++++|+.-..-.++..+.|.+.+.+++..|...+|.+.++++.+....-.+.++.++..+
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            4556  5678999999999999999999999999999999999999999999999998888777776655

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.79  E-value=0.011  Score=37.23  Aligned_cols=64  Identities=25%  Similarity=0.213  Sum_probs=44.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|+...++......++..+.+.+.+.+.        +..+|++.+.+.+....+... .....||++
T Consensus       122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~  194 (394)
T TIGR00883       122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETP  194 (394)
T ss_pred             hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Confidence            5778 889999999998888888888887765543        346788887776555544433 334566654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0254|consensus

Probab=96.79  E-value=0.0093  Score=39.90  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=48.1

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI--GLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|+- .+.|+.-.++...... .+.+..+.......+.  +||..+.+..+.+++..+. .+++||+.
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            47888 9999999988877776 4444446666666554  8997888877788777777 88899873

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.78  E-value=0.0077  Score=39.70  Aligned_cols=67  Identities=9%  Similarity=-0.072  Sum_probs=54.0

Q ss_pred             Cccc-hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLV-ATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      ++.+ .+..++...++ .....++..+.+...+.+.++.|.+.+|++++.+.+...++..+.+++.+..
T Consensus       338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            3557 78888888886 4666788889999999999999988899999999888888888888776653

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.76  E-value=0.0063  Score=40.45  Aligned_cols=49  Identities=20%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI   56 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      .|+++.++.....++++.+++.+.+.+.+..+|++.|.+.+...++..+
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            4888999999999999999999999999888999888887655554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2504|consensus

Probab=96.63  E-value=0.0072  Score=40.78  Aligned_cols=58  Identities=19%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      .+-|+.+.|++....-++.++.+.+.-++.+..||++.+++++.+.....+.....-|
T Consensus       165 ~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  165 EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7889999999999999999999999999999999999999999999888887777777

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.61  E-value=0.011  Score=38.54  Aligned_cols=63  Identities=10%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      +|+.  .+.|.+..++......+++.+...+.+.+.+..+       |++..+++++...+..+...+..+|
T Consensus       129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            5676  5789999999999999999888888888775544       5667778888888888888888888

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.57  E-value=0.018  Score=41.66  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc-hHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR--------IG-LHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|++ .+.|++++|+......++..+++.+.+.+...        .+ +.+.+.+......+..+...+.+||+.
T Consensus       128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (1146)
T PRK08633        128 IPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP  203 (1146)
T ss_pred             hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            36788 88999999999999999999999998888765        22 333333333333333334445567764

>PRK12382 putative transporter; Provisional

Probab=96.52  E-value=0.015  Score=37.17  Aligned_cols=49  Identities=20%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSC   50 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (88)
                      .|.+ .+.|++++++......++..+.+.+.+.+.+..+|++.+.+....
T Consensus       138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            3567 788999999988888888888888888888888988665554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.52  E-value=0.027  Score=35.52  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005           3 NIIPKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL   58 (88)
Q Consensus         3 E~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (88)
                      |..++.|+++.++......++..+.+.+.+.+.+..|++..+++.+...+++.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       315 DLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            44433466999999999999999999999999998898888888777776666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.43  E-value=0.015  Score=36.58  Aligned_cols=65  Identities=12%  Similarity=0.051  Sum_probs=45.3

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hchHHHHHHHHHHHHHHHH-HHHHHhcc
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR----------------IGLHGVFFLYGSCSVFGLI-YLYIWLPE   64 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~pe   64 (88)
                      ++. .+.+++.+++....+.+++++.|.+...+...                ..|+++|++.+....+..+ +.+.-+||
T Consensus        37 ~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~  116 (310)
T TIGR01272        37 ILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPE  116 (310)
T ss_pred             HHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            344 56788999999999999999999999877632                3577788766655444443 33444566


Q ss_pred             CCC
Q psy7005          65 TEG   67 (88)
Q Consensus        65 t~~   67 (88)
                      .+.
T Consensus       117 ~~~  119 (310)
T TIGR01272       117 LQE  119 (310)
T ss_pred             CCc
Confidence            544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00897 2A0118 polyol permease family

Probab=96.43  E-value=0.019  Score=37.07  Aligned_cols=62  Identities=8%  Similarity=-0.160  Sum_probs=39.0

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           3 NII-PKGRGIASGLVATVAYALA-FATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      +.+ .+.|++++|+......++. .+.+.+...+.+..|++..+|.......+..+...++.++
T Consensus       132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            456 7889999999998888775 4566666666666776544444443333333334444444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.39  E-value=0.057  Score=34.84  Aligned_cols=49  Identities=10%  Similarity=-0.082  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFG   54 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   54 (88)
                      ++.|++++++......++..+.+.+.|.+.+.. +|++.+.+++...++.
T Consensus       127 ~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        127 QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            456899999998888888999999988888775 7988777766655444

>PRK09952 shikimate transporter; Provisional

Probab=96.36  E-value=0.018  Score=37.68  Aligned_cols=64  Identities=8%  Similarity=-0.045  Sum_probs=41.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH--------MRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++..+.......++..+...+...+.        ...+||+.|++.+...++ ..+.....||++
T Consensus       151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~  223 (438)
T PRK09952        151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA  223 (438)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            5778 888998888877766666666655544433        246899888776655443 233344567764

>PTZ00207 hypothetical protein; Provisional

Probab=96.30  E-value=0.13  Score=35.57  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++.|+++.|+......+++.+.+.+...+.. .+|++.+++.+...++..+..+.++++..
T Consensus       150 p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        150 PSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            6789999999999999999876666665554 35777888888888887777777666653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.29  E-value=0.045  Score=35.77  Aligned_cols=62  Identities=6%  Similarity=0.026  Sum_probs=44.5

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hchHHHHHHHHHHHHHHH
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR--------------------------IGLHGVFFLYGSCSVFGL   55 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~   55 (88)
                      ++. .+.|++..++....+.+++.+.+.+.+.+...                          .+|+++|.+.+...++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       121 VMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445 57789999999999999999999888876432                          358888888877666654


Q ss_pred             HHHH-HHhcc
Q psy7005          56 IYLY-IWLPE   64 (88)
Q Consensus        56 ~~~~-~~~pe   64 (88)
                      +... .-.||
T Consensus       201 ~~~~~~~~p~  210 (410)
T TIGR00885       201 LLIMLTKMPA  210 (410)
T ss_pred             HHHHHhcCCC
Confidence            4433 22555

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.21  E-value=0.032  Score=37.26  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=48.8

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      ++. .+.+++.+++.+....++..+.+.+.+.+.+..||+..|.+.+.+.+.+.+...+ ++++
T Consensus       343 ~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~  405 (491)
T PRK11010        343 TLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT  405 (491)
T ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            445 6678888999999999998889889999999999988787777777777665554 4554

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.16  E-value=0.045  Score=37.08  Aligned_cols=62  Identities=11%  Similarity=0.064  Sum_probs=45.2

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH--HHHHHHHHHHHHHHhccC
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLY--GSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pet   65 (88)
                      ..+ .+.|+++.|+......++.++.+.+.+. ...+||++...++  +..+.....+..+++|..
T Consensus       141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~  205 (511)
T TIGR00806       141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP  205 (511)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            457 8899999999999999999999999998 6678998755443  222333333445677743

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.15  E-value=0.0071  Score=39.29  Aligned_cols=48  Identities=13%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGS   49 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   49 (88)
                      .|.+ ++.|+++.|+....+++++++.|.+.+.+.+..| |.+.+++.+.
T Consensus       359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             ccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            4678 8999999999999999999999999999888774 7766665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.11  E-value=0.026  Score=37.90  Aligned_cols=67  Identities=21%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEGKT   69 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   69 (88)
                      +|+. ....+...|+...++...++++|.+++.+.+..| .|+.+.......+++.++. ..++..|++.
T Consensus       406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            4566 6677889999999999999999999999998886 5667766666666666655 5577666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.11  E-value=0.11  Score=33.65  Aligned_cols=34  Identities=12%  Similarity=-0.046  Sum_probs=29.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +.++...|+......++..+.+.+.+.+.+..|+
T Consensus       350 ~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       350 RAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4578889999999999999999999998877664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.05  E-value=0.06  Score=37.31  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=46.4

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHHHHHHHHHH
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI----------------------GLHGVFFLYGSCSVFGLIY   57 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~   57 (88)
                      +.|.+ .+.|+...|+......++..+++.+.+.+.+..                      .|+..|++.+++.++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788 899999999999999999988888887766532                      1444566666666665543


Q ss_pred             HHHHhccCC
Q psy7005          58 LYIWLPETE   66 (88)
Q Consensus        58 ~~~~~pet~   66 (88)
                       ++++|++.
T Consensus       277 -l~~~p~~l  284 (633)
T TIGR00805       277 -FFFFPKAL  284 (633)
T ss_pred             -HHhCcccc
Confidence             45566653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.04  E-value=0.03  Score=35.87  Aligned_cols=53  Identities=17%  Similarity=0.038  Sum_probs=41.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG   54 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (88)
                      .|.+ .+.|+++.++......++..+.+.+...+.+..+|++.+++.+...++.
T Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3667 7889999999888888888888888888888889987776655544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.02  E-value=0.034  Score=35.63  Aligned_cols=57  Identities=12%  Similarity=0.051  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .|+.+.+.....+.++..+.+.+.+.+.+..||+..+++.+....+..+ ..+..||.
T Consensus       125 ~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~  181 (382)
T PRK11128        125 QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI  181 (382)
T ss_pred             hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence            4666777788888899999999999999999999888776654444333 33445664

>PRK11462 putative transporter; Provisional

Probab=96.00  E-value=0.12  Score=34.36  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=44.3

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|+-  .+.|++..++-...+.++..+.+.+.+++....|       |.....+++.+.+++...++...+|.
T Consensus       135 ~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        135 GVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            3554  7899999999999999988888777766665543       44455566666556555555555654

>PRK09669 putative symporter YagG; Provisional

Probab=95.93  E-value=0.09  Score=34.48  Aligned_cols=64  Identities=16%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|+.  .+.|.+..++......++..+.+.+.+++...+       +|+..+.+++.+..+.....++..+|.
T Consensus       135 ~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        135 GAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            4555  578999889888888888888877665555443       455566666666666655555555554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.90  E-value=0.0035  Score=41.27  Aligned_cols=64  Identities=9%  Similarity=-0.055  Sum_probs=46.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI---GLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.+ .+.|++++|+......++..+.+.+...+....   +|+..+.+.+...++..+..+++.++.
T Consensus       148 ~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~  215 (467)
T PRK09556        148 TRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDS  215 (467)
T ss_pred             HHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4677 788999999998888888888888776665543   477777776776666655555555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.87  E-value=0.061  Score=34.51  Aligned_cols=44  Identities=16%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSC   50 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (88)
                      +.|++..|.....+.++..+.+.+...+.+..||+..+++.+..
T Consensus       124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            45677888888888899999999999999999999888776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00896 CynX cyanate transporter

Probab=95.85  E-value=0.17  Score=31.93  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=40.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG--LHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++.|+++.++......++..+.+.+.+.+.+..+  |++.+.+.+....+..   ..++|+.+
T Consensus       117 ~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---~~~~~~~~  176 (355)
T TIGR00896       117 PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---LAWIPQVR  176 (355)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHhhhhc
Confidence            4568999999998888999988888887776643  7777766655443332   23455544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.74  E-value=0.0076  Score=37.75  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGV   43 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (88)
                      +|.+ .+.|+++.|+....+.++..+.+.+.+.+.+..||++.
T Consensus       336 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       336 SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            4677 88999999999999999999999999999998887643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.72  E-value=0.023  Score=36.07  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=37.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGV   43 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   43 (88)
                      +|.+ .+.|++++|+....+.++..+.+.+.+.+.+..| +...
T Consensus       354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~  397 (405)
T TIGR00891       354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA  397 (405)
T ss_pred             hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            5778 8999999999999999999999999999999888 5433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.61  E-value=0.13  Score=33.08  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI   56 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      +.|++.+++......++..+.+.+.+.+.+..|+...|.+.+.+.+++..
T Consensus       336 ~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       336 DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999998987777766555555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2615|consensus

Probab=95.58  E-value=0.0077  Score=39.66  Aligned_cols=66  Identities=18%  Similarity=0.050  Sum_probs=44.0

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHH--HHHHHHHH-HHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFL--YGSCSVFG-LIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~~~~~pet~   66 (88)
                      ++|++ .+.|+.+++.......++-+++|.+.+++..   ..|-.+.++.  ++.+.... ..+..+++|||-
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            47899 9999999999999888999999999888776   3332212211  11111222 344557899993

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.57  E-value=0.14  Score=32.85  Aligned_cols=56  Identities=11%  Similarity=-0.034  Sum_probs=40.5

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYL   58 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (88)
                      |.. .+.++...+.......++..+.|.+.+.+.+..++.+.|.+.+.+..+..+..
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            444 44555566666667788999999999999999898878877766666554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.34  E-value=0.13  Score=34.41  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      +.- .+.|++.+|+......+++.+.+.+........++.+.+...+...++..+..++..|
T Consensus       408 ~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       408 KIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455 7889999999999999999998888776666667777777777666666666555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.28  E-value=0.21  Score=34.03  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhccCCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY-IWLPETEG   67 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~   67 (88)
                      .+.|++.+|+..+....+.-++..+.+.+.+..|.+..+.+-++..++..+... ..+++.+.
T Consensus       338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~  400 (524)
T PF05977_consen  338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE  400 (524)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            678999999999999999999999999999999988777665555444444332 33455443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00788 fbt folate/biopterin transporter

Probab=95.25  E-value=0.076  Score=35.36  Aligned_cols=54  Identities=6%  Similarity=-0.061  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005          12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      .+++......++..+.+.+.+.+.+..+|+..+++.+....+. .+..+++||.+
T Consensus       159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            3445555555788888888888888889998888888877777 44567788865

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.12  E-value=0.11  Score=33.79  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      |+..++.......++..+.+.+.+.+.+ .+|++.|++.+...++..+..++..||.
T Consensus       139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        139 SGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             ccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence            4445666677777888888888887765 4788888887777777666655555544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.12  E-value=0.12  Score=35.23  Aligned_cols=60  Identities=12%  Similarity=0.098  Sum_probs=48.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW   61 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      .|+. .+.-..+.++.....++...++|.+.+.++...|..+.|.+.+...++........
T Consensus       129 p~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  129 PELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4667 77788899999999999999999999999998898888888777666655544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.07  E-value=0.092  Score=34.73  Aligned_cols=60  Identities=22%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      |+.-++.+.....+++.+...+.+++.+..+.++.|.+.+....+..+...+..+|.+.+
T Consensus       122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~  181 (433)
T PF03092_consen  122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR  181 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence            778888888888889999998888899988888888888888888777777777774333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.00  E-value=0.016  Score=36.50  Aligned_cols=47  Identities=9%  Similarity=0.010  Sum_probs=35.2

Q ss_pred             Cccc-hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-hHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATV-AYALAFATAKTFLDLHMRIG-LHGVFFLYG   48 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   48 (88)
                      +|++ .+.|+++.++.... +.++..+.|.+.+.+.+..| |++..+...
T Consensus       338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            5788 88999999986544 55777799999999998887 664444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0569|consensus

Probab=94.94  E-value=0.17  Score=34.22  Aligned_cols=65  Identities=14%  Similarity=0.012  Sum_probs=43.0

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFAT-AKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      ++|+- .+.||....+......++..++ ....|.+... ..|.+.+.+-.+...+. .....++||+.
T Consensus       141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESP  208 (485)
T KOG0569|consen  141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESP  208 (485)
T ss_pred             HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            46899 9999999888888777777777 4444555533 34664444444444444 44567799983

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=94.92  E-value=0.27  Score=33.19  Aligned_cols=67  Identities=9%  Similarity=-0.091  Sum_probs=45.7

Q ss_pred             CCccc-hhhH--HHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------------chHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           1 MGNII-PKGR--GIASGLVATVAYALAFATAKTFLDL--HMRI-------------GLHGVFFLYGSCSVFGLIYLYIWL   62 (88)
Q Consensus         1 ~~E~~-~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      ++|+. .+.|  +.+.++......+++.++..+....  .+.+             +.+..|++-++..+++.+...++.
T Consensus       139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v  218 (477)
T TIGR01301       139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV  218 (477)
T ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence            46888 7765  4678877777777777776655432  1111             345677777777888888888889


Q ss_pred             ccCCC
Q psy7005          63 PETEG   67 (88)
Q Consensus        63 pet~~   67 (88)
                      +|..-
T Consensus       219 ~E~~~  223 (477)
T TIGR01301       219 KENPL  223 (477)
T ss_pred             eccCC
Confidence            99653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=94.75  E-value=0.4  Score=32.41  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-------LHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|+-  .+.|.+-.++-.....+++++..++.+++.+..+       ++....+++.+.++..+++++-..|.
T Consensus       138 ~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         138 PEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4554  7889999999999999999999999998887654       34455566666666666666655554

>PRK03699 putative transporter; Provisional

Probab=94.70  E-value=0.14  Score=33.00  Aligned_cols=57  Identities=11%  Similarity=0.027  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .+++..++......++..+.|.+.+.+.+..|++..++..++++++..+. ....+.+
T Consensus       326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~  382 (394)
T PRK03699        326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM-CILLGFV  382 (394)
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH-HHHHHHH
Confidence            35677788888888999999999999999999888887777776666543 3334443

>TIGR00788 fbt folate/biopterin transporter

Probab=94.70  E-value=0.099  Score=34.84  Aligned_cols=37  Identities=14%  Similarity=-0.003  Sum_probs=32.6

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG   39 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (88)
                      ++. .+.+++..++......++..+.+.+...+.+.+|
T Consensus       378 ~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       378 RLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            455 7788999999999999999999988888888887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.54  E-value=0.13  Score=33.07  Aligned_cols=55  Identities=7%  Similarity=0.038  Sum_probs=41.6

Q ss_pred             hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGL-VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI   60 (88)
Q Consensus         6 ~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (88)
                      .+.|+++.+. ......+++.+.+.+.+.+.+..|++..|.+.+++..+..+...+
T Consensus       338 ~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       338 VRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             cceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555 456788899999999999999999888888887777776665443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.32  E-value=0.22  Score=32.07  Aligned_cols=53  Identities=9%  Similarity=-0.076  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      +.|..+..+.+...++++++.....+++.++.+|.+.|.+-++..+++.+..+
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            45788888999999999999999999999999998888877777776666444

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=94.14  E-value=0.3  Score=35.64  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      .+.. .+.|++++|+....+.++..+.+.+...+... .++...+++.+.+..+..++....+|++
T Consensus       348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (1146)
T PRK08633        348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS  413 (1146)
T ss_pred             hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3566 78899999999999998887766665544331 2333445555555444444444455554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=94.12  E-value=0.98  Score=29.97  Aligned_cols=56  Identities=11%  Similarity=-0.009  Sum_probs=47.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW   61 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      ++.++.+.++.....+++..++..+.+.++++.|+....++-+.....+.+.....
T Consensus       330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999998877777777777776665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=94.07  E-value=0.83  Score=29.53  Aligned_cols=51  Identities=18%  Similarity=0.153  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      +++..++....+.++..+.+.+.+.+.+..||+..|.+.+.++.++.+..+
T Consensus       337 ~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        337 SATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            344555555566667766677888899999999888888777777655543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.01  E-value=0.032  Score=37.09  Aligned_cols=61  Identities=20%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             ccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           3 NII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      |+- .+.-+++.|+...++++ ++.......+.+.+..||.+.|.++.+.++++.++......
T Consensus       373 e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         373 EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             ccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            455 56667888888888888 88888888888878899999999998888888877665544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.98  E-value=0.37  Score=31.03  Aligned_cols=53  Identities=17%  Similarity=0.071  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005          12 ASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      ..+.....+.++..+.+.+.+.+. ..+|+..|++.+....+..+..+...||+
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            445555666677777777776554 45888888888877777766655555554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=93.93  E-value=0.14  Score=33.71  Aligned_cols=54  Identities=11%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI---GLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      ++.++...++....+.+++++.|.+.+.+.+..   +|...+.+.++..+++.++..
T Consensus       391 ~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       391 PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            568899999999999999999998888776542   366677777777777665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.91  E-value=0.35  Score=31.18  Aligned_cols=58  Identities=10%  Similarity=0.045  Sum_probs=39.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      .+.|++..++....+.++..+++.+...+.+..++....+...+..++...+...++.
T Consensus       339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK15402        339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLK  396 (406)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999988888877777654444444444444444433333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=93.79  E-value=0.13  Score=34.21  Aligned_cols=53  Identities=17%  Similarity=0.098  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      ++.|++..|+....+.+++.+.+.++. .....+|...|++.+++.+++.+..+
T Consensus       378 ~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        378 RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence            567888899987777777777776643 11223577788888777777766543

>PRK10504 putative transporter; Provisional

Probab=93.63  E-value=0.24  Score=32.53  Aligned_cols=38  Identities=8%  Similarity=-0.129  Sum_probs=32.6

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +.. .+.|+.+.|+......++..+++.+.+.+.+..+.
T Consensus       380 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        380 KDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456 78899999999999999999999998888777654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=93.30  E-value=1.8  Score=30.58  Aligned_cols=52  Identities=12%  Similarity=-0.076  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHH
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      .|.....+.++..++++++.+.+.+++.+..       +|.+.|.+-++.++++.+...
T Consensus       121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999887554       466677766666666655443

>PRK10054 putative transporter; Provisional

Probab=93.11  E-value=0.43  Score=30.93  Aligned_cols=50  Identities=8%  Similarity=-0.008  Sum_probs=35.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI   56 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      .+.|+++.+.. ..++++..++|...+.+.+..|....+++.+.+.++..+
T Consensus       329 ~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  378 (395)
T PRK10054        329 PGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL  378 (395)
T ss_pred             cccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence            55677777754 477899999999999999998866566665444444333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=93.00  E-value=0.31  Score=31.63  Aligned_cols=37  Identities=11%  Similarity=-0.208  Sum_probs=32.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI   38 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   38 (88)
                      .|.. .+.|++++|+......++..+++.+.+.+.+..
T Consensus       323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        323 ASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            3566 789999999999999999999999999988774

>TIGR00900 2A0121 H+ Antiporter protein

Probab=92.45  E-value=0.28  Score=30.56  Aligned_cols=37  Identities=11%  Similarity=-0.147  Sum_probs=29.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI   38 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   38 (88)
                      .|.. .+.|+++.|+....+.++..+.+.+.+.+.+..
T Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       327 QRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3566 778888888888888888888888888777654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=92.36  E-value=1.8  Score=27.84  Aligned_cols=53  Identities=8%  Similarity=-0.182  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005          11 IASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      .+.+.......+++.+.|.+.+.+.+. .++++.+.+.+..+.+.......+.+
T Consensus       324 ~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        324 LGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            333445667789999999999998885 57777777766655555554444443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.36  E-value=0.059  Score=36.44  Aligned_cols=52  Identities=17%  Similarity=0.064  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI   60 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (88)
                      |..+.++.++.-++++++.|.+.+++.++.||...|..-+.-+..+.+..++
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888889999999999999999999998888887777777766554

>KOG3762|consensus

Probab=92.17  E-value=0.15  Score=35.20  Aligned_cols=54  Identities=19%  Similarity=0.129  Sum_probs=43.0

Q ss_pred             hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAY-ALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLY   59 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (88)
                      ++.|.+++++...... ++-.+++++.+.+++.++.+.+|.++++.|++..++..
T Consensus       490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            6788999988876655 55567777778888889989999999998888877654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=91.96  E-value=2.2  Score=27.42  Aligned_cols=50  Identities=10%  Similarity=-0.006  Sum_probs=37.4

Q ss_pred             hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVAT-VAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI   56 (88)
Q Consensus         6 ~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      .+.|++++++... ...++..+.+.+.+.+.+..|. ..|++.+.+.+++.+
T Consensus       323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       323 GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            4567888998764 4558888899999999999885 467777776665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=91.69  E-value=2.8  Score=27.97  Aligned_cols=64  Identities=14%  Similarity=0.040  Sum_probs=37.2

Q ss_pred             Cccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII--PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-------GLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|+-  .+.|.+..++-.....+++.+++...+.+....       ++.....+++++..+.....++..+|.
T Consensus       132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            4554  678888888866666666666655544443332       234445555555555555565556664

>PRK09848 glucuronide transporter; Provisional

Probab=91.65  E-value=2.7  Score=27.68  Aligned_cols=34  Identities=9%  Similarity=-0.099  Sum_probs=27.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +.++...|+......++..+.+.+.+.+++..|+
T Consensus       358 r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        358 RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3468888999999999999998888887766553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=91.46  E-value=0.69  Score=34.00  Aligned_cols=61  Identities=13%  Similarity=0.123  Sum_probs=40.3

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhc
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR-IGLHGVFFLYGSCSVFGLIYLYIWLP   63 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   63 (88)
                      +.. .+.|++++|+....+.++..+.+.+...+... .+....+++.+...++.....+...|
T Consensus       361 ~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (1140)
T PRK06814        361 AWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILILRLLP  423 (1140)
T ss_pred             hhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            556 78899999999999999999999888877643 44444444444443443333333333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=90.54  E-value=2.6  Score=28.53  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      -+...|+..+.+-+++++.|.++....+..| +...++.+....+++.+..|.+.-+
T Consensus       400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3456788888888889999988888877754 4557888888888888887776544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=89.87  E-value=2.2  Score=27.39  Aligned_cols=35  Identities=11%  Similarity=-0.035  Sum_probs=28.1

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR   37 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (88)
                      +.. .+.|++++++......++..+.+.+.+.+.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        121 CSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            345 67799999999888888988888888776554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=89.61  E-value=3.5  Score=27.90  Aligned_cols=60  Identities=10%  Similarity=0.020  Sum_probs=35.8

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhchHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLH----------MRIGLHGVFFLYGSCSVFGLIYLYIWL   62 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      +.- .+.|++++|+......+++.+...+.....          ...+..+.|...+...++..+..+...
T Consensus       409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~  479 (500)
T PRK09584        409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA  479 (500)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345 788999999887777777777766663211          111234566666666655554444433

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=89.54  E-value=1.2  Score=24.02  Aligned_cols=36  Identities=22%  Similarity=0.042  Sum_probs=23.7

Q ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005          35 HMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      .+..+|..++++....+++...+.+.+.|||.-++-
T Consensus        54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~W   89 (105)
T PF10183_consen   54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTW   89 (105)
T ss_pred             chHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            455677767766555555555666677899987653

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=89.36  E-value=1.8  Score=29.01  Aligned_cols=57  Identities=21%  Similarity=0.283  Sum_probs=46.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHh
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWL   62 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   62 (88)
                      .+.-+...|+..+.+.++++..|..+....+..| +...|+++..+.+++.+..+...
T Consensus       344 ~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         344 PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677899999999999999999999998887 66788888888888888766544

>PRK10133 L-fucose transporter; Provisional

Probab=89.23  E-value=4.1  Score=26.99  Aligned_cols=32  Identities=13%  Similarity=-0.131  Sum_probs=22.1

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDL   34 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~   34 (88)
                      |+. .+.|...+++......++..+.+.+.+.+
T Consensus       144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 55566678888888778888887776543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=89.22  E-value=4.9  Score=26.82  Aligned_cols=33  Identities=18%  Similarity=-0.058  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      ..+...|.......++..+.+.+.+.+++..|+
T Consensus       364 ~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        364 CESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            345567888888889999999988888776554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.01  E-value=5.1  Score=26.72  Aligned_cols=65  Identities=12%  Similarity=0.094  Sum_probs=42.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL--------HGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|+- ...-++..++-..+.+++..+...+...+.+.++.        .+..++...+. +..+.....+|+.+.
T Consensus       344 a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~-ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  344 ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ-LLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH-HHHHHHHHHcCCCch
Confidence            3455 56678889999999999999988888888777663        12233333333 333444556777554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=88.85  E-value=5.2  Score=26.66  Aligned_cols=52  Identities=25%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFGLIY   57 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   57 (88)
                      ++.-+..+++++..-.+++.+.+...+++.++. +|++...+++..+.+..+.
T Consensus       129 pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         129 PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            344566788999999999999999999988887 7999999888888877654

>TIGR00895 2A0115 benzoate transport

Probab=88.14  E-value=0.96  Score=28.54  Aligned_cols=32  Identities=9%  Similarity=-0.140  Sum_probs=23.1

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLD   33 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~   33 (88)
                      +|.+ .+.|+++.|+......++..+.+.+.+.
T Consensus       364 ~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       364 ALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            4667 7777888887777777777777766554

>KOG2532|consensus

Probab=87.44  E-value=0.53  Score=31.74  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFLYGSCSVFGLIYLYIW   61 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      .=+..+|+......+..++.|.+.+.+..   .-.|+++|++.+++.+++.++..++
T Consensus       390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            34566788888888888888888888773   3478999999999988888765544

>KOG2325|consensus

Probab=87.39  E-value=2  Score=29.34  Aligned_cols=62  Identities=10%  Similarity=0.007  Sum_probs=39.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL--------------HGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      .+.|.++++......-++..++|.+-+. +..++.              ..+-|+.+..+++..++..+++.|....
T Consensus       160 ~~dR~rA~a~~~~~~vlg~ilGp~~q~~-f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  160 VEDRPRAFAATSGGFVLGIILGPTIQLA-FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             ccchHHHHHHhhhHHHHHHHHhHHHHHH-HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            5678888887776555555555544432 222221              1356888888888888888888886433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=86.98  E-value=6.6  Score=25.72  Aligned_cols=45  Identities=16%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy7005           8 GRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVF   53 (88)
Q Consensus         8 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (88)
                      .++++.|+.....+....+.+....++... +..+.+...+....+
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            378888888888888888888887776555 445556555444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=86.75  E-value=3.8  Score=26.26  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q psy7005          14 GLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGS   49 (88)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (88)
                      +.+.....+...+.+.+.+.+....|+.....+.+.
T Consensus       326 g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        326 GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            444455566777777777788877776543444333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=85.70  E-value=7.6  Score=25.93  Aligned_cols=55  Identities=24%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Q psy7005           7 KGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIW   61 (88)
Q Consensus         7 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      ++-+.-.+++...+++.+.++|++++++.|..| |......++...++..++.+..
T Consensus       329 ~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         329 AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            344555778888899999999999999999874 6667777777777766665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=85.56  E-value=0.0082  Score=39.07  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             CCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           1 MGNII-PKGRGIASGLVATVAYALAFATAKTFLDLHM---RIGLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         1 ~~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +.|+. .+.|+...++......++..+...+...+..   ..+|+..+.+-+...++. .+...++||+
T Consensus       127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES  194 (451)
T PF00083_consen  127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES  194 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            46888 8899888877766655555554444332222   234775555554444443 3445789998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=85.53  E-value=4.6  Score=25.53  Aligned_cols=38  Identities=18%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLY   47 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (88)
                      .+++.++. ..+.+++.+.|.+.+.+.+..|.+..+++.
T Consensus       263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            34556664 567788889999888888888877666533

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=85.47  E-value=8.7  Score=25.69  Aligned_cols=35  Identities=9%  Similarity=-0.317  Sum_probs=23.9

Q ss_pred             hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           6 PKGRGIAS--GLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         6 ~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      +..|..+.  +.......++..+.+.+.+.+++..|+
T Consensus       354 tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        354 NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44565555  444588888888888888877765443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=85.40  E-value=1.8  Score=26.89  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=27.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005           5 IPKGRGIASGLVATVAYALAFATAKTFLDLHMR   37 (88)
Q Consensus         5 ~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (88)
                      |++.|+++.|+......+.+.+.+.++..+...
T Consensus       125 FP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  125 FPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             CccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            356799999999999999999988888776655

>PRK11043 putative transporter; Provisional

Probab=84.83  E-value=5.3  Score=25.72  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMR   37 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (88)
                      ++.|++++|+....+..++...+.+.+.+.+.
T Consensus       326 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        326 PQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            45689999999999888888888888877654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=84.45  E-value=10  Score=25.51  Aligned_cols=40  Identities=13%  Similarity=0.042  Sum_probs=34.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLH   41 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (88)
                      +|+- .+.|++..++.+..--++..+...++..+++.++..
T Consensus       115 ~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen  115 ADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            5677 899999999999999999999999999888877643

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=84.30  E-value=8.2  Score=24.40  Aligned_cols=49  Identities=18%  Similarity=0.061  Sum_probs=29.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLI   56 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (88)
                      ++.|+++.++.....+..+.+.+...+.+.+..+  +.+.++.....+..+
T Consensus       330 ~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  378 (385)
T TIGR00710       330 PHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA--WPMSLSCLVLAVVSV  378 (385)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHhccccCh--HHHHHHHHHHHHHHH
Confidence            4568899999888888777777776663333222  344444444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=83.54  E-value=9.8  Score=24.72  Aligned_cols=46  Identities=17%  Similarity=0.052  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFG   54 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (88)
                      +++..++......++..+++.+.+.+.+..|.+..+...+....+.
T Consensus       338 ~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        338 AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            4456666677778889999999999998888765555544444333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=83.52  E-value=9  Score=24.28  Aligned_cols=18  Identities=33%  Similarity=0.589  Sum_probs=11.6

Q ss_pred             hhhHHHHHHHHHHHHHHH
Q psy7005           6 PKGRGIASGLVATVAYAL   23 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~   23 (88)
                      ++.|+++.++........
T Consensus       317 ~~~~g~~~~~~~~~~~~~  334 (377)
T PRK11102        317 PHMAGTASSLAGTLRFGI  334 (377)
T ss_pred             cccchHHHHHHHHHHHHH
Confidence            456778888776655433

>PRK09669 putative symporter YagG; Provisional

Probab=82.41  E-value=12  Score=24.73  Aligned_cols=32  Identities=3%  Similarity=-0.221  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRIGL   40 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (88)
                      .+...|+......++..+.+.+.+.+++..|+
T Consensus       360 ~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        360 DGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            45567888888899999999998888877654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=81.06  E-value=1.8  Score=29.18  Aligned_cols=62  Identities=16%  Similarity=0.096  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGL-HGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      .+.-+...|+.+.+++..++++|+.+..+.+..|- +..+........+..+ ....+|+.+.+
T Consensus       372 ~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~~~~  434 (438)
T COG2270         372 KGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVPGRR  434 (438)
T ss_pred             CccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCCCCc
Confidence            44456678999999999999999999988877653 3333333333333322 33455655433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=80.83  E-value=15  Score=25.02  Aligned_cols=59  Identities=25%  Similarity=0.373  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           9 RGIASGLVATVAYALAFATAKTFLDLHMRI--------GLHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         9 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      |++..+.....+++++.+...+.-.+....        ..+..+.+-+.+.++..+-.++++||.++
T Consensus       186 ~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  186 RGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            488888888999988888776655443322        23566777777777777777788999865

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.21
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.1
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.82
2xut_A	524	Proton/peptide symporter family protein; transport	97.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.44
2xut_A	524	Proton/peptide symporter family protein; transport	97.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.23
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.16
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	94.83
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	85.46

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=4.8e-19  Score=113.09  Aligned_cols=85  Identities=24%  Similarity=0.426  Sum_probs=69.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMR------IGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHEIE   74 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~   74 (88)
                      +|+| +++|++++|++.+.+|+++++.++++|.+.+.      .++.+.+++++++++++.++.++++|||||+++||+|
T Consensus       396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            6999 99999999999999999999999999987543      3445688999999999999999999999999999999


Q ss_pred             HHHhcCcchhhc
Q psy7005          75 LHFKQKKSKVVQ   86 (88)
Q Consensus        75 ~~~~~~~~~~~~   86 (88)
                      +.++++.+++++
T Consensus       476 ~~f~~~~~~~~~  487 (491)
T 4gc0_A          476 ALWEPETKKTQQ  487 (491)
T ss_dssp             GGTC--------
T ss_pred             HHhCCCCccccc
Confidence            999877665554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.21  E-value=2.5e-06  Score=53.70  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFGLIYLYIWLPETEG   67 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~   67 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+ |++.+++.+...++..+..++++||+..
T Consensus       145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            5788 8999999999999999999999999998888888 9999999998888888877788888754

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.10  E-value=2.5e-06  Score=53.90  Aligned_cols=69  Identities=9%  Similarity=-0.005  Sum_probs=57.3

Q ss_pred             Cccc-hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q psy7005           2 GNII-PKGRGIASGLV-ATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTL   70 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   70 (88)
                      +|.+ ++.|++++++. ...+++++.+.|.+.+.+.+..|+...|.+.+...+++.+..++..||++..++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            5778 99999999995 677889999999999999888887778888888888887777777888776554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.88  E-value=4.2e-06  Score=52.64  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYA-LAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIW   61 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (88)
                      .|.+ .+.|+++.|+......+ +..+.+.+.+.+.+..|+...+++.+++.+++.+..++.
T Consensus       372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4677 88999999999999999 999999999999999998888888888888877766554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.87  E-value=8.3e-05  Score=47.45  Aligned_cols=63  Identities=17%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             Cccc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           2 GNII-PKG--RGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         2 ~E~~-~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      +|++ .+.  |+.+.++......++..+.+.+.+.+.+..+|++.|++.+....+..+...+..|+
T Consensus       134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            4677 767  77788888899999999999999999999999999998877777766665554444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.82  E-value=2.5e-06  Score=52.72  Aligned_cols=67  Identities=10%  Similarity=0.018  Sum_probs=56.7

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+.+..+|++.+++.+....+..+...+.+||++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            4667 788999999999999999999999999888888999999988888887777666778887543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.49  E-value=3.2e-05  Score=49.80  Aligned_cols=71  Identities=4%  Similarity=0.003  Sum_probs=44.9

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ch-HHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI----------GL-HGVFFLYGSCSVFGLIYLYIWLPETEGKT   69 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~pet~~~~   69 (88)
                      +|.. ++.|++++|+....+++++.+.+.+.+.+.+..          +. ...++++++++++..+..+++.++++.++
T Consensus       431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3567 789999999999999999999999998876521          11 22377777777877777777778877665


Q ss_pred             HHH
Q psy7005          70 LHE   72 (88)
Q Consensus        70 ~~~   72 (88)
                      .++
T Consensus       511 ~~~  513 (524)
T 2xut_A          511 HYR  513 (524)
T ss_dssp             ---
T ss_pred             hhh
Confidence            543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.44  E-value=0.00032  Score=43.93  Aligned_cols=66  Identities=8%  Similarity=0.019  Sum_probs=50.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------------------hHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLH-MRIG-------------------------LHGVFFLYGSCSVFG   54 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~~~~~~~~~   54 (88)
                      +|.+ .+.|+++.++......++..+.+.+.+.+. +..+                         |++.+++.+....+.
T Consensus       143 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  222 (438)
T 3o7q_A          143 TVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLV  222 (438)
T ss_dssp             HHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            5778 899999999999999999999999988887 4443                         888887777766665


Q ss_pred             HHHHHH-HhccCCC
Q psy7005          55 LIYLYI-WLPETEG   67 (88)
Q Consensus        55 ~~~~~~-~~pet~~   67 (88)
                      .+..++ ..||++.
T Consensus       223 ~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          223 ALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHCCCCCCTT
T ss_pred             HHHHHHHcCCcccc
Confidence            554433 3566543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.31  E-value=0.00043  Score=44.56  Aligned_cols=59  Identities=12%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             Cccc-hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q psy7005           2 GNII-PKGRGIASGL---VATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYI   60 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (88)
                      +|.+ .+.|+++.++   ......++..+.+.+.+.+.+..+|++.|++.+...++..+...+
T Consensus       135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4677 8888766655   888888889999988888888889999998888777666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.23  E-value=9.9e-05  Score=47.09  Aligned_cols=66  Identities=12%  Similarity=-0.047  Sum_probs=49.0

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGK   68 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   68 (88)
                      .|.+ .+.|++++|+....+++++.+.+.+.+.+.+ .+..+.+.+++..+++..+..+++.++++++
T Consensus       412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677 8899999999999999999999999876654 3556688888888888888887777777654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.16  E-value=0.014  Score=36.48  Aligned_cols=50  Identities=6%  Similarity=-0.024  Sum_probs=38.6

Q ss_pred             ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHH
Q psy7005           3 NII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRIG-LHGVFFLYGSCSVFG   54 (88)
Q Consensus         3 E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   54 (88)
                      |.+ ++ |+.+.++.. .++++..+.+.+.+.+.+..| ++..+.+.+.+.++.
T Consensus       374 ~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          374 KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            556 55 888888877 778999999999999999988 777777655444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=94.83  E-value=0.088  Score=33.43  Aligned_cols=63  Identities=11%  Similarity=-0.008  Sum_probs=37.4

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------chHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI--------GLHGVFFLYGSCSVFGLIYLYIWLPET   65 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pet   65 (88)
                      +|.. .+.|+...++......++..+............        .|++.+.+.. ...+......+++||+
T Consensus       152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~peS  223 (491)
T 4gc0_A          152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC-IPALLFLMLLYTVPES  223 (491)
T ss_dssp             HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH-HHHHHHHHHGGGSCCC
T ss_pred             HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh-hhhhhhhhhhhcCCCC
Confidence            6888 999999999887776666665555544433221        2333333333 3333334455678997

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=85.46  E-value=0.67  Score=28.31  Aligned_cols=40  Identities=18%  Similarity=-0.104  Sum_probs=32.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy7005           6 PKGRGIASGLVATVAYALAFATAKTFLDLHMRIGLHGVFF   45 (88)
Q Consensus         6 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (88)
                      ++.|+++.|+....+.++..+.+.+.+.+.+..++...+.
T Consensus       321 p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  360 (375)
T 2gfp_A          321 PFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL  360 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            4679999999999999999999999888877666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.45
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.05
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	92.37

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=7e-07  Score=53.16  Aligned_cols=71  Identities=8%  Similarity=-0.017  Sum_probs=60.7

Q ss_pred             Cccc-hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH
Q psy7005           2 GNII-PKGRGIASGLVAT-VAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKTLHE   72 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   72 (88)
                      +|.+ ++.|+++.++... .+.++..+.+.+.+.+.+..|++..+++.+++.++..++..+.+++++..+.++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            4678 8999999998654 566889999999999999999999999999999998888888888888777643

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.7e-06  Score=52.64  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=51.2

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhcc
Q psy7005           2 GNII-PKGRGIASGLVATVAYAL-AFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPE   64 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   64 (88)
                      +|++ .+.|+++.|+....++++ ..+.+.+.+.+.+..|++..+++++++.+++.++.+++.++
T Consensus       369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678 899999999999888875 45678888899999999888888888888887776665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=3.3e-06  Score=51.31  Aligned_cols=65  Identities=12%  Similarity=0.134  Sum_probs=54.5

Q ss_pred             Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy7005           2 GNII-PKGRGIASGLVATVAYALAFATAKTFLDLHMRI-GLHGVFFLYGSCSVFGLIYLYIWLPETE   66 (88)
Q Consensus         2 ~E~~-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pet~   66 (88)
                      +|.+ .+.|++++++......++..+.+.....+.... +|++.+++.+...++..++.+++++|++
T Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            5788 899999999999999999999988887776664 7888888888888888888888777764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.26  Score=28.28  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7005          11 IASGLVATVAYALAFATAKTFLDLHMRIGLHGVFFLYGSCSVFGLIYLYIWLPETEGKT   69 (88)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   69 (88)
                      .+.+........+..+.+.+.+.+.+. ++...+........+..+...+..||+....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSA  195 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred             HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccch
Confidence            344455555555666666666655544 4555666666666666677777777775544