Psyllid ID: psy701


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MLPNYLVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
cccccHHccccccccccEEEEEccccccccEEEEEEEEcccccEEEEcccccccccEEEEEEEEEHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccEEEEEEEcccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHcEEEEEcc
ccccHHHcccccccccEEEEEEEEEEEccEEEEEEEEEccccEEEEEEEccccccccEEEEEEEcHHHHHHHHHHHHHHcHHHccccccccccccEEEEEEEEEccEEEEEEEcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MLPNYLVStmsgagqdFYIRYYVghkgkfgheflefefrpdgklryannsnykndtmiRKEAYVHKCVMDELKRIINEsevmheddslwpqpdrigrqeLEIVIgdehisfttsktgslvdvnhskdpdglRCFYYLVQDLKCLVFSLIglhykikpi
MLPNYLVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEfrpdgklryannsnykndtmIRKEAYVHKCVMDELKRIINESEVmheddslwpqpdRIGRQELEIVIGDEhisfttsktgslvdvnhSKDPDGLRCFYYLVQDLKCLVFSLIglhykikpi
MLPNYLVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
*****LVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKI***
*LPNY**STMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
MLPNYLVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
*LP*Y**STMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPNYLVSTMSGAGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
P49028147 Protein mago nashi OS=Dro yes N/A 0.924 0.993 0.869 1e-72
O42149146 Protein mago nashi homolo N/A N/A 0.917 0.993 0.875 1e-72
Q9CQL1146 Protein mago nashi homolo yes N/A 0.917 0.993 0.868 2e-72
Q96A72148 Protein mago nashi homolo yes N/A 0.930 0.993 0.850 3e-72
Q0VC92148 Protein mago nashi homolo yes N/A 0.930 0.993 0.850 3e-72
P50594146 Protein mago nashi homolo yes N/A 0.917 0.993 0.862 5e-72
B9ENE7147 Protein mago nashi homolo N/A N/A 0.924 0.993 0.856 6e-72
Q566Y8147 Protein mago nashi homolo yes N/A 0.924 0.993 0.856 6e-72
Q27W02146 Protein mago nashi homolo yes N/A 0.905 0.979 0.874 8e-72
P61327146 Protein mago nashi homolo yes N/A 0.905 0.979 0.874 8e-72
>sp|P49028|MGN_DROME Protein mago nashi OS=Drosophila melanogaster GN=mago PE=1 SV=1 Back     alignment and function desciption
 Score =  271 bits (693), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/146 (86%), Positives = 138/146 (94%)

Query: 13  AGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDEL 72
           + +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+EL
Sbjct: 2   STEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61

Query: 73  KRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLR 132
           KRII +SE+M EDD  WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLR
Sbjct: 62  KRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLR 121

Query: 133 CFYYLVQDLKCLVFSLIGLHYKIKPI 158
           CFYYLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 122 CFYYLVQDLKCLVFSLIGLHFKIKPI 147




Participates in the bidirectional intercellular signaling between the posterior follicle cells and oocyte to establish spatial coordinates that induces axis formation. Complex with tsu is essential for cytoplasmic localization of oskar in the posterior pole of oocytes. Required for the polarization of the oocyte microtubule cytoskeleton.
Drosophila melanogaster (taxid: 7227)
>sp|O42149|MGN_XENLA Protein mago nashi homolog OS=Xenopus laevis GN=magoh PE=2 SV=1 Back     alignment and function description
>sp|Q9CQL1|MGN2_MOUSE Protein mago nashi homolog 2 OS=Mus musculus GN=Magohb PE=2 SV=1 Back     alignment and function description
>sp|Q96A72|MGN2_HUMAN Protein mago nashi homolog 2 OS=Homo sapiens GN=MAGOHB PE=1 SV=1 Back     alignment and function description
>sp|Q0VC92|MGN2_BOVIN Protein mago nashi homolog 2 OS=Bos taurus GN=MAGOHB PE=2 SV=1 Back     alignment and function description
>sp|P50594|MGN_CHICK Protein mago nashi homolog OS=Gallus gallus GN=MAGOH PE=2 SV=2 Back     alignment and function description
>sp|B9ENE7|MGN_SALSA Protein mago nashi homolog OS=Salmo salar GN=magoh PE=2 SV=1 Back     alignment and function description
>sp|Q566Y8|MGN_DANRE Protein mago nashi homolog OS=Danio rerio GN=magoh PE=2 SV=1 Back     alignment and function description
>sp|Q27W02|MGN_RAT Protein mago nashi homolog OS=Rattus norvegicus GN=Magoh PE=2 SV=1 Back     alignment and function description
>sp|P61327|MGN_MOUSE Protein mago nashi homolog OS=Mus musculus GN=Magoh PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
110755095146 PREDICTED: protein mago nashi [Apis mell 0.905 0.979 0.916 1e-74
156544015146 PREDICTED: protein mago nashi homolog 2- 0.905 0.979 0.916 2e-74
332028345146 Protein mago nashi [Acromyrmex echinatio 0.905 0.979 0.909 3e-74
357608362146 mago nashi [Danaus plexippus] 0.917 0.993 0.910 3e-74
157126173149 mago nashi, putative [Aedes aegypti] gi| 0.943 1.0 0.879 4e-74
213493456147 mago-nashi [Penaeus monodon] 0.924 0.993 0.897 4e-74
170033403149 mago nashi [Culex quinquefasciatus] gi|1 0.943 1.0 0.872 5e-74
322785857146 hypothetical protein SINV_09898 [Solenop 0.905 0.979 0.909 8e-74
170285571146 putative protein mago nashi [Cotesia con 0.905 0.979 0.902 1e-73
242012656151 protein mago nashi, putative [Pediculus 0.949 0.993 0.866 1e-73
>gi|110755095|ref|XP_001120074.1| PREDICTED: protein mago nashi [Apis mellifera] gi|340711982|ref|XP_003394544.1| PREDICTED: protein mago nashi-like [Bombus terrestris] gi|350402504|ref|XP_003486509.1| PREDICTED: protein mago nashi-like [Bombus impatiens] gi|380030201|ref|XP_003698742.1| PREDICTED: protein mago nashi-like [Apis florea] gi|383861312|ref|XP_003706130.1| PREDICTED: protein mago nashi-like [Megachile rotundata] gi|307189971|gb|EFN74207.1| Protein mago nashi [Camponotus floridanus] gi|307204538|gb|EFN83218.1| Protein mago nashi [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/143 (91%), Positives = 140/143 (97%)

Query: 16  DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRI 75
           DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVH+CVM+ELKRI
Sbjct: 4   DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHQCVMEELKRI 63

Query: 76  INESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
           I +SE+M EDDSLWPQPDR+GRQELEIVIGDEHISFTTSKTGSL+DVN S+DP+GLRCFY
Sbjct: 64  IQDSEIMQEDDSLWPQPDRVGRQELEIVIGDEHISFTTSKTGSLLDVNQSRDPEGLRCFY 123

Query: 136 YLVQDLKCLVFSLIGLHYKIKPI 158
           YLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 124 YLVQDLKCLVFSLIGLHFKIKPI 146




Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544015|ref|XP_001608006.1| PREDICTED: protein mago nashi homolog 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332028345|gb|EGI68392.1| Protein mago nashi [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|357608362|gb|EHJ65953.1| mago nashi [Danaus plexippus] Back     alignment and taxonomy information
>gi|157126173|ref|XP_001660832.1| mago nashi, putative [Aedes aegypti] gi|157129592|ref|XP_001655409.1| mago nashi, putative [Aedes aegypti] gi|108872119|gb|EAT36344.1| AAEL011544-PA [Aedes aegypti] gi|108873342|gb|EAT37567.1| AAEL010453-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|213493456|gb|ACJ47903.1| mago-nashi [Penaeus monodon] Back     alignment and taxonomy information
>gi|170033403|ref|XP_001844567.1| mago nashi [Culex quinquefasciatus] gi|167874305|gb|EDS37688.1| mago nashi [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|322785857|gb|EFZ12476.1| hypothetical protein SINV_09898 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|170285571|emb|CAM34505.1| putative protein mago nashi [Cotesia congregata] Back     alignment and taxonomy information
>gi|242012656|ref|XP_002427045.1| protein mago nashi, putative [Pediculus humanus corporis] gi|212511293|gb|EEB14307.1| protein mago nashi, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
FB|FBgn0002736147 mago "mago nashi" [Drosophila 0.911 0.979 0.881 1.3e-68
MGI|MGI:1913691146 Magohb "mago-nashi homolog B ( 0.917 0.993 0.868 2.7e-68
UNIPROTKB|F1SQ44148 LOC100518306 "Uncharacterized 0.936 1.0 0.859 9.2e-68
UNIPROTKB|F1NDG4147 MAGOH "Protein mago nashi homo 0.905 0.972 0.874 1.2e-67
UNIPROTKB|P50594146 MAGOH "Protein mago nashi homo 0.905 0.979 0.874 1.2e-67
UNIPROTKB|Q0VC92148 MAGOHB "Protein mago nashi hom 0.905 0.966 0.874 1.2e-67
UNIPROTKB|Q3ZBV3146 MAGOH "Protein mago nashi homo 0.905 0.979 0.874 1.2e-67
UNIPROTKB|P61326146 MAGOH "Protein mago nashi homo 0.905 0.979 0.874 1.2e-67
UNIPROTKB|Q96A72148 MAGOHB "Protein mago nashi hom 0.905 0.966 0.874 1.2e-67
UNIPROTKB|F1S766146 MAGOH "Uncharacterized protein 0.905 0.979 0.874 1.2e-67
FB|FBgn0002736 mago "mago nashi" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 127/144 (88%), Positives = 137/144 (95%)

Query:    15 QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKR 74
             +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+ELKR
Sbjct:     4 EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKR 63

Query:    75 IINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCF 134
             II +SE+M EDD  WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLRCF
Sbjct:    64 IIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCF 123

Query:   135 YYLVQDLKCLVFSLIGLHYKIKPI 158
             YYLVQDLKCLVFSLIGLH+KIKPI
Sbjct:   124 YYLVQDLKCLVFSLIGLHFKIKPI 147




GO:0007315 "pole plasm assembly" evidence=NAS;TAS
GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=NAS;IMP
GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=NAS;IMP
GO:0048477 "oogenesis" evidence=IMP;TAS
GO:0000226 "microtubule cytoskeleton organization" evidence=TAS
GO:0008104 "protein localization" evidence=IMP;IPI
GO:0005634 "nucleus" evidence=NAS;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0016325 "oocyte microtubule cytoskeleton organization" evidence=TAS
GO:0006406 "mRNA export from nucleus" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS
GO:0046594 "maintenance of pole plasm mRNA location" evidence=TAS
GO:0007267 "cell-cell signaling" evidence=NAS
GO:0007309 "oocyte axis specification" evidence=NAS
GO:0007318 "pole plasm protein localization" evidence=NAS
GO:0045495 "pole plasm" evidence=IDA;NAS
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0035145 "exon-exon junction complex" evidence=IPI
GO:0008380 "RNA splicing" evidence=IMP
GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP
MGI|MGI:1913691 Magohb "mago-nashi homolog B (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQ44 LOC100518306 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDG4 MAGOH "Protein mago nashi homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P50594 MAGOH "Protein mago nashi homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VC92 MAGOHB "Protein mago nashi homolog 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBV3 MAGOH "Protein mago nashi homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61326 MAGOH "Protein mago nashi homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96A72 MAGOHB "Protein mago nashi homolog 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S766 MAGOH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96A72MGN2_HUMANNo assigned EC number0.85030.93030.9932yesN/A
O43037MGN_SCHPONo assigned EC number0.56640.90500.9727yesN/A
P49029MGN_CAEELNo assigned EC number0.77630.94300.9802yesN/A
P49028MGN_DROMENo assigned EC number0.86980.92400.9931yesN/A
P61326MGN_HUMANNo assigned EC number0.87410.90500.9794yesN/A
P61327MGN_MOUSENo assigned EC number0.87410.90500.9794yesN/A
P50594MGN_CHICKNo assigned EC number0.86200.91770.9931yesN/A
Q55E21MGN_DICDINo assigned EC number0.67130.90500.7258yesN/A
Q27W02MGN_RATNo assigned EC number0.87410.90500.9794yesN/A
P49030MGN_ORYSJNo assigned EC number0.75310.96200.95yesN/A
Q9CQL1MGN2_MOUSENo assigned EC number0.86890.91770.9931yesN/A
O42149MGN_XENLANo assigned EC number0.87580.91770.9931N/AN/A
Q3ZBV3MGN_BOVINNo assigned EC number0.87410.90500.9794yesN/A
B9ENE7MGN_SALSANo assigned EC number0.85610.92400.9931N/AN/A
O23676MGN_ARATHNo assigned EC number0.74480.91770.9666yesN/A
O65806MGN_EUPLANo assigned EC number0.75830.94301.0N/AN/A
Q566Y8MGN_DANRENo assigned EC number0.85610.92400.9931yesN/A
Q0VC92MGN2_BOVINNo assigned EC number0.85030.93030.9932yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
cd11295143 cd11295, Mago_nashi, Mago nashi proteins, integral 1e-109
pfam02792143 pfam02792, Mago_nashi, Mago nashi protein 1e-88
>gnl|CDD|199917 cd11295, Mago_nashi, Mago nashi proteins, integral members of the exon junction complex Back     alignment and domain information
 Score =  306 bits (786), Expect = e-109
 Identities = 121/143 (84%), Positives = 133/143 (93%)

Query: 16  DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRI 75
           DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYV   V++ELKRI
Sbjct: 1   DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVSPAVLEELKRI 60

Query: 76  INESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFY 135
           I +SE++ EDD+ WP+PDR+GRQELEIV+GDEHISFTTSK GSLVDV  SKDP+GLR FY
Sbjct: 61  IEDSEILKEDDAKWPEPDRVGRQELEIVMGDEHISFTTSKIGSLVDVQQSKDPEGLRVFY 120

Query: 136 YLVQDLKCLVFSLIGLHYKIKPI 158
           YLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 121 YLVQDLKCLVFSLIGLHFKIKPI 143


Members of this family, which was originally identified in Drosophila and called mago nashi, are integral members of the exon junction complex (EJC). The EJC is a multiprotein complex that is deposited on spliced mRNAs after intron removal at a conserved position upstream of the exon-exon junction, and transported to the cytoplasm where it has been shown to influence translation, surveillance, and localization of the spliced mRNA. It consists of four core proteins (eIF4AIII, Barentsz [Btz], Mago, and Y14), mRNA, and ATP and is supposed to be a binding platform for more peripherally and transiently associated factors along mRNA travel. Mago and Y14 form a stable heterodimer that stabilizes the complex by inhibiting eIF4AIII's ATPase activity. In humans, but not Drosophila, EJC is involved in nonsense-mediated mRNA decay (NMD) via binding to Upf3b, a central NMD effector. EJC is stripped off the mRNA during the first round of translation and then the complex components are transported back into the nucleus and recycled. The Mago-Y14 heterodimer has been shown to interact with the cytoplasmic protein PYM, an EJC disassembly factor, and specifically binds to the karyopherin nuclear receptor importin 13. Length = 143

>gnl|CDD|111665 pfam02792, Mago_nashi, Mago nashi protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 158
PF02792143 Mago_nashi: Mago nashi protein; InterPro: IPR00402 100.0
KOG3392|consensus147 100.0
>PF02792 Mago_nashi: Mago nashi protein; InterPro: IPR004023 This family was originally identified in drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene [] Back     alignment and domain information
Probab=100.00  E-value=2.4e-101  Score=607.25  Aligned_cols=143  Identities=83%  Similarity=1.390  Sum_probs=132.9

Q ss_pred             ceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCceEEEEEEeeHHHHHHHHHHhhhcccccccCCCCCCCCCC
Q psy701           16 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDRI   95 (158)
Q Consensus        16 ~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~~IrKE~~vs~~v~~E~kRII~~SeI~kEdD~~WP~pd~~   95 (158)
                      +||||||+||+||||||||||||||||+||||||||||||+||||||+||++||+|+||||.+||||+|||++||+||++
T Consensus         1 ~fYlRYy~gH~GkfGhEfLEfEfr~dG~lRYaNnSnYknd~~IrKe~~vs~~vl~E~krII~~SeI~kEdD~~WP~pd~~   80 (143)
T PF02792_consen    1 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDSMIRKEVYVSPAVLEELKRIIEDSEIMKEDDSKWPEPDRV   80 (143)
T ss_dssp             -EEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEESCCCSEEEEEEEEE-HHHHHHHHHHHHHHTGGG--STTS--SBTT
T ss_pred             CeeEEEEeccCccccceEEEEEeccCCeEEEcccCCCCCcceeeeeeEecHHHHHHHHHHHHHhhccccccccCCCCCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEECCeEEEEEeccccceeeccCCCCCcchhhhHHHHHHHHHHHHHHhhhceeeccC
Q psy701           96 GRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI  158 (158)
Q Consensus        96 GrQELEI~~g~~HisF~tsKiGSl~dvq~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  158 (158)
                      |||||||+|||+||||+|||||||+|||+|+||||||+||||||||||||||||+||||||||
T Consensus        81 GrQELEI~lg~~HisF~tsKigsl~dv~~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  143 (143)
T PF02792_consen   81 GRQELEIVLGNEHISFTTSKIGSLSDVQNSKDPEGLRVFYYLVQDLKCLVFSLISLHFKIKPI  143 (143)
T ss_dssp             BEEEEEEEETTEEEEEEEC---SHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-
T ss_pred             cceeEEEEECCEEEEEEecccccceeeccCCCccHHHHHHHHHHHHHHHHHHHHHheeeeccC
Confidence            999999999999999999999999999999999999999999999999999999999999998



The human homologue has been shown to interact with an RNA binding protein, ribonucleoprotein rbm8 (Q9Y5S9 from SWISSPROT) []. An RNAi knockout of the Caenorhabditis elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination [] but the protein is also found in hermaphrodites and other organisms without a sexual differentiation.; GO: 0005634 nucleus; PDB: 2XB2_Y 2J0S_C 3EX7_A 2J0Q_F 1P27_C 2HYI_A 2X1G_B 1HL6_B 1RK8_B 1OO0_A ....

>KOG3392|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
1oo0_A147 Crystal Structure Of The Drosophila Mago Nashi-Y14 1e-73
1hl6_B149 A Novel Mode Of Rbd-Protein Recognition In The Y14- 1e-73
2hyi_A146 Structure Of The Human Exon Junction Complex With A 8e-73
1p27_A144 Crystal Structure Of The Human Y14MAGOH COMPLEX Len 3e-72
>pdb|1OO0|A Chain A, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex Length = 147 Back     alignment and structure

Iteration: 1

Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 127/146 (86%), Positives = 138/146 (94%) Query: 13 AGQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDEL 72 + +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+EL Sbjct: 2 STEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61 Query: 73 KRIINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLR 132 KRII +SE+M EDD WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLR Sbjct: 62 KRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLR 121 Query: 133 CFYYLVQDLKCLVFSLIGLHYKIKPI 158 CFYYLVQDLKCLVFSLIGLH+KIKPI Sbjct: 122 CFYYLVQDLKCLVFSLIGLHFKIKPI 147
>pdb|1HL6|B Chain B, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago Complex Length = 149 Back     alignment and structure
>pdb|2HYI|A Chain A, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 146 Back     alignment and structure
>pdb|1P27|A Chain A, Crystal Structure Of The Human Y14MAGOH COMPLEX Length = 144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
1oo0_A147 MAGO nashi protein; RNA recognition motif, splicin 4e-84
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Length = 147 Back     alignment and structure
 Score =  243 bits (620), Expect = 4e-84
 Identities = 127/144 (88%), Positives = 137/144 (95%)

Query: 15  QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKR 74
           +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+ELKR
Sbjct: 4   EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKR 63

Query: 75  IINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCF 134
           II +SE+M EDD  WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLRCF
Sbjct: 64  IIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCF 123

Query: 135 YYLVQDLKCLVFSLIGLHYKIKPI 158
           YYLVQDLKCLVFSLIGLH+KIKPI
Sbjct: 124 YYLVQDLKCLVFSLIGLHFKIKPI 147


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
1oo0_A147 MAGO nashi protein; RNA recognition motif, splicin 100.0
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Back     alignment and structure
Probab=100.00  E-value=1.5e-101  Score=609.34  Aligned_cols=145  Identities=88%  Similarity=1.445  Sum_probs=143.3

Q ss_pred             CCceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCceEEEEEEeeHHHHHHHHHHhhhcccccccCCCCCCCC
Q psy701           14 GQDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPD   93 (158)
Q Consensus        14 ~~~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~~IrKE~~vs~~v~~E~kRII~~SeI~kEdD~~WP~pd   93 (158)
                      +++||||||+||+||||||||||||||||+||||||||||||+|||||||||++||+|+||||.+|||++|||++||+||
T Consensus         3 ~~~fYlRYY~GH~GkfGhEfLEfEfr~dG~lrYaNnSnYknd~~IrKe~~vs~~v~~E~krII~~SeI~kEdD~~WP~pd   82 (147)
T 1oo0_A            3 TEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPD   82 (147)
T ss_dssp             -CCEEEEEEEEEEETTEEEEEEEEECTTSEEEEEEECCTTSSCCEEEEEEECHHHHHHHHHHHHHHTGGGCCCTTSCCCC
T ss_pred             CCcEEEEEEecccCcccceEEEEEecCCCeEEEeccCCCcCCeeEEEEEEecHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEECCeEEEEEeccccceeeccCCCCCcchhhhHHHHHHHHHHHHHHhhhceeeccC
Q psy701           94 RIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKIKPI  158 (158)
Q Consensus        94 ~~GrQELEI~~g~~HisF~tsKiGSl~dvq~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  158 (158)
                      ++|||||||+|||+||||+|||||||+|||+|+||||||+||||||||||||||||+||||||||
T Consensus        83 ~~GrQELEI~~g~~HisF~tskigSl~dv~~S~DPeGLr~FyYLvqDLKclvfsLi~lHFkikpi  147 (147)
T 1oo0_A           83 RVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPI  147 (147)
T ss_dssp             SSEEEEEEEEETTEEEEEEECCCCCHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcCceeEEEEECCEEEEEEecCcccHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHhheeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999997




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 158
d1rk8b_141 d.232.1.1 (B:) Mago nashi protein {Fruit fly (Dros 1e-102
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 141 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Mago nashi protein
superfamily: Mago nashi protein
family: Mago nashi protein
domain: Mago nashi protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 Score =  288 bits (738), Expect = e-102
 Identities = 124/141 (87%), Positives = 134/141 (95%)

Query: 15  QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKR 74
           +DFY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEA+VH+ VM+ELKR
Sbjct: 1   EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKR 60

Query: 75  IINESEVMHEDDSLWPQPDRIGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCF 134
           II +SE+M EDD  WP PDR+GRQELEIVIGDEHISFTTSKTGSLVDVN SKDP+GLRCF
Sbjct: 61  IIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCF 120

Query: 135 YYLVQDLKCLVFSLIGLHYKI 155
           YYLVQDLKCLVFSLIGLH+KI
Sbjct: 121 YYLVQDLKCLVFSLIGLHFKI 141


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
d1rk8b_141 Mago nashi protein {Fruit fly (Drosophila melanoga 100.0
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Mago nashi protein
superfamily: Mago nashi protein
family: Mago nashi protein
domain: Mago nashi protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00  E-value=1.3e-99  Score=592.63  Aligned_cols=141  Identities=88%  Similarity=1.454  Sum_probs=126.1

Q ss_pred             CceEEEEecccCCcccceeEEEEEcCCCceeeecCCCCCCCceEEEEEEeeHHHHHHHHHHhhhcccccccCCCCCCCCC
Q psy701           15 QDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHKCVMDELKRIINESEVMHEDDSLWPQPDR   94 (158)
Q Consensus        15 ~~FYlRYY~GH~GkfGHEFLEfEfr~dG~lRYaNNSnYKnd~~IrKE~~vs~~v~~E~kRII~~SeI~kEdD~~WP~pd~   94 (158)
                      ++|||||||||+||||||||||||||||+||||||||||||+||||||+||++||+|+||||.+||||+|||++||+||+
T Consensus         1 ~~FYlRYYvGH~GkfGhEfLEfEfr~dG~lrYaNnSnYknd~~IrKe~~vs~~v~~EikrII~~SeI~kedD~~WP~pdr   80 (141)
T d1rk8b_           1 EDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDR   80 (141)
T ss_dssp             CCEEEEEEE------CCCCEEEEECTTCEEEEEC--------CCEEEEEECHHHHHHHHHHHHHHTGGGCCCTTSCCCCS
T ss_pred             CceEEEEEecccCcccceEEEEEecCCCeeeeecccCccchhhhhhhheecHHHHHHHHHHHHHHhccccccccCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEECCeEEEEEeccccceeeccCCCCCcchhhhHHHHHHHHHHHHHHhhhceee
Q psy701           95 IGRQELEIVIGDEHISFTTSKTGSLVDVNHSKDPDGLRCFYYLVQDLKCLVFSLIGLHYKI  155 (158)
Q Consensus        95 ~GrQELEI~~g~~HisF~tsKiGSl~dvq~S~DPeGLr~FyYLvqDLKclvfsLi~lHFki  155 (158)
                      +|||||||+|||+||||+|||||||.|||+|+||+|||+||||||||||||||||+|||||
T Consensus        81 ~GrQELEI~~g~~HisF~TsKigSl~dv~~S~DPeGLr~FyylvqDlkclvfsLi~lHfkI  141 (141)
T d1rk8b_          81 VGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKI  141 (141)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCCSHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCcEEEEEEECCEEEEEEecccccHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999997