Psyllid ID: psy702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGIL
ccccccHHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHcccccEEEEccccEEcccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEEEEEEccccccccEEEEEcccccccc
ccccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHcccccccHEHEHHHEEEEEEccEEEEEccccccHHHHcccccEEEEccHHHHHHHHHHHHHHHHHccEEEccccccEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHccccEEEEEEEcccccccccccccHcHHHHHHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEEEEEcccccccEEEEEEccccccc
trgdvnsktllspivkqfshnchvsfyhtpdlrwplnrllphryNELIGLQHMKFYLIDNCVIitganlsgdyftsrqdrymiiqdhkplsdffDDLSRVLCKIsfqltpdgkfildkefplspvsvtqrgeylkRSRSLVLDmydgyrtrnttavspalsstqppdtwlaplielpplhiqlDSRVTKLILSLArdgscvslgtgyfNLTQEYVRAMldkprvnysvlmahptangflgargaaggiPYAYTALAARFLSRVSNLKVAMFEYVRSgwtyhakglwysespgskpvltligspnfgil
trgdvnsktllspivkQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLtpdgkfildkefplspvsvtqrgeylkrsrslVLDMYDGYRTRNTtavspalsstqppDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWysespgskpvltligspnfgil
TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGIL
*********LLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTA***********DTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSE******VLTLI********
*****NS***LSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVL*********************QPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI*
TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTA*********PPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGIL
*****NSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGIL
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TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
Q32NB8556 CDP-diacylglycerol--glyce yes N/A 0.980 0.543 0.441 4e-69
Q5R8K7556 CDP-diacylglycerol--glyce yes N/A 0.980 0.543 0.438 1e-67
Q2KJ28556 CDP-diacylglycerol--glyce yes N/A 0.983 0.544 0.430 1e-66
Q9Z2Z7553 CDP-diacylglycerol--glyce yes N/A 0.983 0.547 0.424 1e-66
Q8BHF7553 CDP-diacylglycerol--glyce yes N/A 0.980 0.546 0.429 1e-66
Q5ZHN9557 CDP-diacylglycerol--glyce yes N/A 0.983 0.543 0.413 9e-66
Q7KWX2581 Probable CDP-diacylglycer yes N/A 0.954 0.506 0.354 1e-48
Q9HDW1502 CDP-diacylglycerol--glyce yes N/A 0.964 0.591 0.315 4e-34
P25578521 CDP-diacylglycerol--glyce yes N/A 0.951 0.562 0.302 8e-33
P79001521 CDP-diacylglycerol--glyce N/A N/A 0.948 0.560 0.316 1e-32
>sp|Q32NB8|PGPS1_HUMAN CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Homo sapiens GN=PGS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  261 bits (667), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/326 (44%), Positives = 194/326 (59%), Gaps = 24/326 (7%)

Query: 1   TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDN 60
           +RG  NS+T+L P++++F     VS +HTP LR  L  L+P R+NE IGLQH+K YL DN
Sbjct: 169 SRGRKNSRTMLLPLLRRFPEQVRVSLFHTPHLRGLLRLLIPERFNETIGLQHIKVYLFDN 228

Query: 61  CVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKF-ILDKE 119
            VI++GANLS  YFT+RQDRY+ +QD   ++DFF +L   +  +S QL  D    ++D  
Sbjct: 229 SVILSGANLSDSYFTNRQDRYVFLQDCAEIADFFTELVDAVGDVSLQLQGDDTVQVVDGM 288

Query: 120 FPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRN--------------TTAVSPALSSTQP 165
             + P     R EY K +   V+D+ +  RTR               T   + A    +P
Sbjct: 289 --VHPYK-GDRAEYCKAANKRVMDVINSARTRQQMLHAQTFHSNSLLTQEDAAAAGDRRP 345

Query: 166 -PDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRV 224
            PDTW+ PLI++ P  IQ+D  VT+ +L+ A  G+ V L TGYFNLTQ Y+  +L   R 
Sbjct: 346 APDTWIYPLIQMKPFEIQIDEIVTETLLTEAERGAKVYLTTGYFNLTQAYMDLVLGT-RA 404

Query: 225 NYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNL----KVAMFEYVRSGWTY 280
            Y +L+A P  NGF GA+G AG IP AY  +  +F S V +L    +V + EY R GWT+
Sbjct: 405 EYQILLASPEVNGFFGAKGVAGAIPAAYVHIERQFFSEVCSLGQQERVQLQEYWRRGWTF 464

Query: 281 HAKGLWYSESPGSKPVLTLIGSPNFG 306
           HAKGLW   +  S P LTLIGSPNFG
Sbjct: 465 HAKGLWLYLAGSSLPCLTLIGSPNFG 490
Functions in the biosynthesis of the anionic phospholipids phosphatidylglycerol and cardiolipin.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 8EC: .EC: 5
>sp|Q5R8K7|PGPS1_PONAB CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Pongo abelii GN=PGS1 PE=2 SV=1 Back     alignment and function description
>sp|Q2KJ28|PGPS1_BOVIN CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Bos taurus GN=PGS1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z2Z7|PGPS1_CRIGR CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Cricetulus griseus GN=PGS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BHF7|PGPS1_MOUSE CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Mus musculus GN=Pgs1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZHN9|PGPS1_CHICK CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial OS=Gallus gallus GN=PGS1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KWX2|PGPS1_DICDI Probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Dictyostelium discoideum GN=pgs1 PE=3 SV=1 Back     alignment and function description
>sp|Q9HDW1|PGPS1_SCHPO CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pgs1 PE=3 SV=2 Back     alignment and function description
>sp|P25578|PGPS1_YEAST CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGS1 PE=1 SV=4 Back     alignment and function description
>sp|P79001|PGPS1_SACPS CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Saccharomyces pastorianus GN=PGS1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
321477273 481 hypothetical protein DAPPUDRAFT_305718 [ 0.990 0.634 0.441 2e-72
195497757 494 GE25174 [Drosophila yakuba] gi|194182336 0.967 0.603 0.477 2e-71
195145982 493 GL23108 [Drosophila persimilis] gi|19410 0.974 0.608 0.474 3e-71
28572961 494 CG7718 [Drosophila melanogaster] gi|1794 0.967 0.603 0.477 4e-71
195569831 494 GD20153 [Drosophila simulans] gi|1941988 0.967 0.603 0.477 4e-71
125774377 493 GA20541 [Drosophila pseudoobscura pseudo 0.974 0.608 0.474 4e-71
194900122 493 GG16338 [Drosophila erecta] gi|190651309 0.967 0.604 0.474 8e-71
195449230 495 GK22604 [Drosophila willistoni] gi|19416 0.974 0.606 0.467 1e-70
194742311 493 GF17865 [Drosophila ananassae] gi|190626 0.967 0.604 0.474 2e-70
195343212 494 GM18684 [Drosophila sechellia] gi|194133 0.970 0.605 0.469 3e-70
>gi|321477273|gb|EFX88232.1| hypothetical protein DAPPUDRAFT_305718 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/315 (44%), Positives = 204/315 (64%), Gaps = 10/315 (3%)

Query: 1   TRG----DVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFY 56
           TRG     +NS+T+L P+V+ +S  C V FYHTP LR  L ++LP R+NE+IGLQHMK Y
Sbjct: 102 TRGSRGAQINSRTMLLPLVQSYSQQCSVHFYHTPALRGLLKKILPERWNEIIGLQHMKIY 161

Query: 57  LIDNCVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFIL 116
           + D+ ++I+GANLS DYFT+RQDRY+I++D K L DFFD L   +C+ SF L+ +    L
Sbjct: 162 IFDDSLLISGANLSHDYFTNRQDRYIIMEDCKDLVDFFDQLVETVCQFSFHLSENNCLNL 221

Query: 117 DKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIEL 176
           +  FP  P   + R E+ + ++  + ++++     N ++      +    DTW+ P I++
Sbjct: 222 NSAFPHHPFE-SNRLEFTEEAKRRINNLFEKQIKANVSSSIFQWPNPSAYDTWIFPFIQM 280

Query: 177 PPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTAN 236
             L+I +D+ +T+ IL      + + L TGYFNLTQ+Y+ ++L+  + N  +LMAHP AN
Sbjct: 281 GQLNIYMDNILTREILENVPANAELCLATGYFNLTQDYMDSLLEASQPNVHILMAHPLAN 340

Query: 237 GFLGARGAAGGIPYAYTALAARFLSRVSN----LKVAMFEYVRSGWTYHAKGLWYSESPG 292
           GFLGA+G AGGIP  YT LA +F  RV +     ++ ++EY R  WT+HAKGLW S + G
Sbjct: 341 GFLGAKGFAGGIPSGYTLLAYQFYRRVVDRALEARIRLWEYQRQNWTFHAKGLWISFNRG 400

Query: 293 S-KPVLTLIGSPNFG 306
             +P  TL+GSPNFG
Sbjct: 401 DPRPSFTLVGSPNFG 415

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195497757|ref|XP_002096235.1| GE25174 [Drosophila yakuba] gi|194182336|gb|EDW95947.1| GE25174 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195145982|ref|XP_002013969.1| GL23108 [Drosophila persimilis] gi|194102912|gb|EDW24955.1| GL23108 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|28572961|ref|NP_650751.3| CG7718 [Drosophila melanogaster] gi|17946117|gb|AAL49100.1| RE55033p [Drosophila melanogaster] gi|28381356|gb|AAF55593.2| CG7718 [Drosophila melanogaster] gi|220948928|gb|ACL87007.1| CG7718-PA [synthetic construct] gi|220957696|gb|ACL91391.1| CG7718-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195569831|ref|XP_002102912.1| GD20153 [Drosophila simulans] gi|194198839|gb|EDX12415.1| GD20153 [Drosophila simulans] Back     alignment and taxonomy information
>gi|125774377|ref|XP_001358447.1| GA20541 [Drosophila pseudoobscura pseudoobscura] gi|54638184|gb|EAL27586.1| GA20541 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194900122|ref|XP_001979606.1| GG16338 [Drosophila erecta] gi|190651309|gb|EDV48564.1| GG16338 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195449230|ref|XP_002071983.1| GK22604 [Drosophila willistoni] gi|194168068|gb|EDW82969.1| GK22604 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194742311|ref|XP_001953646.1| GF17865 [Drosophila ananassae] gi|190626683|gb|EDV42207.1| GF17865 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195343212|ref|XP_002038192.1| GM18684 [Drosophila sechellia] gi|194133042|gb|EDW54610.1| GM18684 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
FB|FBgn0038649494 CG7718 [Drosophila melanogaste 0.967 0.603 0.477 1.7e-68
UNIPROTKB|B4DLU3421 PGS1 "cDNA FLJ55337, highly si 0.980 0.717 0.441 1.6e-63
UNIPROTKB|Q32NB8556 PGS1 "CDP-diacylglycerol--glyc 0.980 0.543 0.441 1.6e-63
RGD|1305052458 Pgs1 "phosphatidylglycerophosp 0.980 0.659 0.441 3e-62
UNIPROTKB|D4A5W8553 Pgs1 "Similar to phosphatidylg 0.980 0.546 0.441 3e-62
UNIPROTKB|Q9Z2Z7553 PGS1 "CDP-diacylglycerol--glyc 0.980 0.546 0.435 7.9e-62
UNIPROTKB|Q5ZHN9557 PGS1 "CDP-diacylglycerol--glyc 0.483 0.267 0.477 7.9e-62
MGI|MGI:1921701553 Pgs1 "phosphatidylglycerophosp 0.980 0.546 0.438 1.3e-61
UNIPROTKB|F1PYJ9556 PGS1 "Uncharacterized protein" 0.983 0.544 0.424 2.7e-61
UNIPROTKB|Q2KJ28556 PGS1 "CDP-diacylglycerol--glyc 0.983 0.544 0.433 3.4e-61
FB|FBgn0038649 CG7718 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 149/312 (47%), Positives = 194/312 (62%)

Query:     1 TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDN 60
             TRG +NSKT+L P+V+ F+    +S YHTPDLR    RL P R+NEL+GLQHMK YL D+
Sbjct:   128 TRGTLNSKTMLLPLVRDFASQVQLSLYHTPDLRGMTKRLAPPRWNELLGLQHMKVYLFDD 187

Query:    61 CVIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEF 120
              VII+GANLS DYFT+RQDRY++I+D KPL+DF+      + + S  + PD    L + +
Sbjct:   188 AVIISGANLSNDYFTNRQDRYILIED-KPLADFYAQFIERVQEFSLAVAPDASEGLHRNW 246

Query:   121 PLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPP--DTWLAPLIELPP 178
              + P   T+  ++++ +R  + D+         T    A +  Q P  DTW+ PL+E+  
Sbjct:   247 RILPYEGTKE-QFIQLARKRISDLVQ------ETFQRQARTKEQNPQADTWIFPLLEMGQ 299

Query:   179 LHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGF 238
             + I  DS VTK +LS    GS + L TGYFNLTQEY+  +  K     S+LMAHP ANGF
Sbjct:   300 IGIHHDSVVTKRLLSNCLSGSRLKLATGYFNLTQEYMDTLTHKCLAQCSILMAHPNANGF 359

Query:   239 LGARGAAGGIPYAYTALAARF----LSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSK 294
              GA+G AGGIP AYT +A  F    + R  N +V  FEY + GWTYHAKGLWY       
Sbjct:   360 QGAKGPAGGIPAAYTLIAKSFYESLVRRKQNHRVNFFEYEKPGWTYHAKGLWYYLPEAIL 419

Query:   295 PVLTLIGSPNFG 306
             P LTLIGS NFG
Sbjct:   420 PNLTLIGSSNFG 431
GO:0008444 "CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity" evidence=ISS
GO:0008654 "phospholipid biosynthetic process" evidence=IEA
UNIPROTKB|B4DLU3 PGS1 "cDNA FLJ55337, highly similar to Homo sapiens phosphatidylglycerophosphate synthase 1 (PGS1), mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q32NB8 PGS1 "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305052 Pgs1 "phosphatidylglycerophosphate synthase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4A5W8 Pgs1 "Similar to phosphatidylglycerophosphate synthase (Predicted), isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z2Z7 PGS1 "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHN9 PGS1 "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1921701 Pgs1 "phosphatidylglycerophosphate synthase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYJ9 PGS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ28 PGS1 "CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.8LOW CONFIDENCE prediction!
4th Layer2.7.8.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
cd09137186 cd09137, PLDc_PGS1_euk_2, Catalytic domain, repeat 9e-52
cd09135170 cd09135, PLDc_PGS1_euk_1, Catalytic domain, repeat 4e-50
cd09102168 cd09102, PLDc_CDP-OH_P_transf_II_1, Catalytic doma 2e-23
cd09103184 cd09103, PLDc_CDP-OH_P_transf_II_2, Catalytic doma 6e-18
COG1502438 COG1502, Cls, Phosphatidylserine/phosphatidylglyce 4e-06
cd09134173 cd09134, PLDc_PSS_G_neg_1, Catalytic domain, repea 1e-05
PRK09428451 PRK09428, pssA, phosphatidylserine synthase; Provi 4e-04
cd09116138 cd09116, PLDc_Nuc_like, Catalytic domain of EDTA-r 0.004
>gnl|CDD|197235 cd09137, PLDc_PGS1_euk_2, Catalytic domain, repeat 2, of eukaryotic phosphatidylglycerophosphate synthases Back     alignment and domain information 
 Score =  168 bits (427), Expect = 9e-52
 Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 5/143 (3%)

Query: 168 TWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYS 227
           TW+ PL+++ PL+I  + +VT  +L L   GS ++L +GYFNLT EY+  +L+    N  
Sbjct: 1   TWVYPLLQMGPLNISQEEQVTSRLLQLLPRGSSLTLASGYFNLTPEYLNLLLNSSA-NLD 59

Query: 228 VLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLK----VAMFEYVRSGWTYHAK 283
           VL A P ANGF G++G +G IP AYT +A +FL RV        + +FEY R GWT+HAK
Sbjct: 60  VLTASPEANGFYGSKGVSGYIPPAYTYIARQFLKRVRKNGKQPRIKLFEYKRPGWTFHAK 119

Query: 284 GLWYSESPGSKPVLTLIGSPNFG 306
           GLW        P LTLIGS N+G
Sbjct: 120 GLWIYLPGTDLPSLTLIGSSNYG 142

Catalytic domain, repeat 2, of eukaryotic phosphatidylglycerophosphate (PGP) synthases, also called CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5). Eukaryotic PGP synthases are different and unrelated to prokaryotic PGP synthases and yeast phosphatidylserine synthase. They catalyze the synthesis of PGP from CDP-diacylglycerol and sn-glycerol 3-phosphate, the committed and rate-limiting step in the biosynthesis of cardiolipin (CL), which is an essential component of many mitochondrial functions in eukaryotes. Members in this subfamily all have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. They may utilize a common two-step ping-pong catalytic mechanism involving a substrate-enzyme intermediate to cleave phosphodiester bonds. The two motifs are suggested to constitute the active site involved in the phosphatidyl group transfer. Length = 186
>gnl|CDD|197233 cd09135, PLDc_PGS1_euk_1, Catalytic domain, repeat 1, of eukaryotic PhosphatidylGlycerophosphate Synthases Back     alignment and domain information
>gnl|CDD|197201 cd09102, PLDc_CDP-OH_P_transf_II_1, Catalytic domain, repeat 1, of CDP-alcohol phosphatidyltransferase class-II family members Back     alignment and domain information
>gnl|CDD|197202 cd09103, PLDc_CDP-OH_P_transf_II_2, Catalytic domain, repeat 2, of CDP-alcohol phosphatidyltransferase class-II family members Back     alignment and domain information
>gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|197232 cd09134, PLDc_PSS_G_neg_1, Catalytic domain, repeat 1, of phosphatidylserine synthases from gram-negative bacteria Back     alignment and domain information
>gnl|CDD|236510 PRK09428, pssA, phosphatidylserine synthase; Provisional Back     alignment and domain information
>gnl|CDD|197215 cd09116, PLDc_Nuc_like, Catalytic domain of EDTA-resistant nuclease Nuc, vertebrate phospholipase D6, and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
KOG3964|consensus469 100.0
PRK09428451 pssA phosphatidylserine synthase; Provisional 100.0
COG1502438 Cls Phosphatidylserine/phosphatidylglycerophosphat 99.88
PRK11263 411 cardiolipin synthase 2; Provisional 99.87
PRK01642483 cls cardiolipin synthetase; Reviewed 99.84
PRK12452509 cardiolipin synthetase; Reviewed 99.83
PHA02820424 phospholipase-D-like protein; Provisional 99.76
PHA03003369 palmytilated EEV membrane glycoprotein; Provisiona 99.59
cd00138176 PLDc Phospholipase D. Active site motifs; The PLD 99.08
PHA02820 424 phospholipase-D-like protein; Provisional 98.9
PF13091126 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 98.84
PRK05443691 polyphosphate kinase; Provisional 98.51
PRK13912177 nuclease NucT; Provisional 98.41
cd00138176 PLDc Phospholipase D. Active site motifs; The PLD 98.32
KOG3603|consensus456 98.31
PRK11263 411 cardiolipin synthase 2; Provisional 98.11
PRK05443 691 polyphosphate kinase; Provisional 97.97
TIGR03705672 poly_P_kin polyphosphate kinase 1. Members of this 97.89
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 97.56
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 97.08
PHA03003 369 palmytilated EEV membrane glycoprotein; Provisiona 97.07
PF13091126 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 96.91
PRK01642 483 cls cardiolipin synthetase; Reviewed 96.84
PLN02352 758 phospholipase D epsilon 96.78
PRK13912177 nuclease NucT; Provisional 96.69
PLN02270 808 phospholipase D alpha 96.67
PF0061428 PLDc: Phospholipase D Active site motif; InterPro: 96.62
PLN02866 1068 phospholipase D 96.51
PRK12452 509 cardiolipin synthetase; Reviewed 96.48
PF0061428 PLDc: Phospholipase D Active site motif; InterPro: 96.37
COG3886198 Predicted HKD family nuclease [DNA replication, re 95.89
PF09565 296 RE_NgoFVII: NgoFVII restriction endonuclease; Inte 95.7
PRK09428 451 pssA phosphatidylserine synthase; Provisional 95.51
TIGR03705 672 poly_P_kin polyphosphate kinase 1. Members of this 94.07
PLN03008 868 Phospholipase D delta 93.27
COG1502 438 Cls Phosphatidylserine/phosphatidylglycerophosphat 90.79
KOG3603|consensus 456 86.55
PF13090 352 PP_kinase_C: Polyphosphate kinase C-terminal domai 83.1
KOG1329|consensus887 80.25
>KOG3964|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.4e-84  Score=610.07  Aligned_cols=300  Identities=43%  Similarity=0.673  Sum_probs=257.4

Q ss_pred             CCCCCChhhhhHH--HHHhcCCceEEEEeeCCCCcccccccCCCccccccCcceeEEEEecCcEEeecccCCcCcccccC
Q psy702            1 TRGDVNSKTLLSP--IVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQ   78 (308)
Q Consensus         1 ~rg~~~s~~~l~~--l~~~~~~~v~i~LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~YftnRq   78 (308)
                      |||-.+++|||.|  |.++|++||+++|||||.|+|+.|+++|.||||++|+||||||+|||+||+||||||+|||||||
T Consensus        95 tr~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddeviiSGanls~dyfTNRq  174 (469)
T KOG3964|consen   95 TRELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEVIISGANLSNDYFTNRQ  174 (469)
T ss_pred             cccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhhhcccccchhhhhcccc
Confidence            5778899999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEecCcchHHHHHHHHHHHHhccceeecCCCccccC--CCCCCCCCCcchhhHHHHHHH----HHHHHhhhcccccc
Q psy702           79 DRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILD--KEFPLSPVSVTQRGEYLKRSR----SLVLDMYDGYRTRN  152 (308)
Q Consensus        79 DRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~--~~~~~~p~~~~~~~~f~~~~~----~~l~~~~~~~~~~~  152 (308)
                      |||++|++ +.+||||..+|+.++++|+++.++......  +++.+.|...-  ..+..++.    ....++++..... 
T Consensus       175 dry~L~sd-r~~adF~f~l~dlvss~sl~~~~~~~~~~i~~~n~~v~p~~~~--~~a~~q~sqll~~~~s~~l~~~p~~-  250 (469)
T KOG3964|consen  175 DRYYLFSD-RRLADFYFKLHDLVSSFSLQKIPDESDGSIHTKNPRVDPIENL--SGANMQMSQLLTGHSSSLLQQNPID-  250 (469)
T ss_pred             ceeEEEec-ccHHHHHHHHHHHHhhhhhhhCcchhhcccccCCccccchhhH--HHhHHHHHHHHHhhhHHHhhhhhHh-
Confidence            99999999 999999999999999999999998665432  24445554431  12222222    2223333221100 


Q ss_pred             cccCCCCCCCCCCCCeEEEEeecCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHHcCCCCcEEEEecC
Q psy702          153 TTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAH  232 (308)
Q Consensus       153 ~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~~~~~~~v~Ii~as  232 (308)
                         .+..+.....+|+||+|++||+|..+..++.++..|+..+....+|+|||||||++++|++.|++..|+++.|++|+
T Consensus       251 ---~a~~~~~rp~~da~~~PL~~~~~~~~~~ke~v~~~l~t~~~~~~~~~lttGYfNl~~~y~k~L~~~~~a~~sil~as  327 (469)
T KOG3964|consen  251 ---AAGAFDRRPAPDAWIYPLFQMKPIEIQFKEIVTSTLLTEALRGAKWTLTTGYFNLTQAYMKQLLLGTGAEYSILLAS  327 (469)
T ss_pred             ---HhhccCCCcCccceeeecccCccccchhhHHhHHHHHHHHhccceEEEeeccccCcHHHHHHHhhccccceEEEecC
Confidence               11111133456999999999999999999888888888876688999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcccccChhHHHHHHHHHHHHHh----hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702          233 PTANGFLGARGAAGGIPYAYTALAARFLSRV----SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI  307 (308)
Q Consensus       233 p~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l----~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~  307 (308)
                      |+|||||+++|++|.||++|++++++|++.+    ++++|.++||+++||||||||+|.+......|++|+|||||||+
T Consensus       328 P~aNgF~~akgva~~ip~aY~yi~rqflesv~~~~q~h~v~l~E~q~~GwtyHaKGlW~~l~~~~~p~lTvIGSSNf~~  406 (469)
T KOG3964|consen  328 PEANGFYGAKGVAGAIPPAYVYIARQFLESVCRLKQNHRVQLQEYQRRGWTYHAKGLWLYLAGSSLPFLTVIGSSNFGR  406 (469)
T ss_pred             ccccccccCCCccccCcHHHHHHHHHHHHHHHhhcccccchHHHhhcCCcceeccceeeecccccCceeEEecCCCccc
Confidence            9999999999999999999999999999998    45679999999999999999999998888889999999999985

>PRK09428 pssA phosphatidylserine synthase; Provisional Back     alignment and domain information
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>PRK11263 cardiolipin synthase 2; Provisional Back     alignment and domain information
>PRK01642 cls cardiolipin synthetase; Reviewed Back     alignment and domain information
>PRK12452 cardiolipin synthetase; Reviewed Back     alignment and domain information
>PHA02820 phospholipase-D-like protein; Provisional Back     alignment and domain information
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional Back     alignment and domain information
>cd00138 PLDc Phospholipase D Back     alignment and domain information
>PHA02820 phospholipase-D-like protein; Provisional Back     alignment and domain information
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A Back     alignment and domain information
>PRK05443 polyphosphate kinase; Provisional Back     alignment and domain information
>PRK13912 nuclease NucT; Provisional Back     alignment and domain information
>cd00138 PLDc Phospholipase D Back     alignment and domain information
>KOG3603|consensus Back     alignment and domain information
>PRK11263 cardiolipin synthase 2; Provisional Back     alignment and domain information
>PRK05443 polyphosphate kinase; Provisional Back     alignment and domain information
>TIGR03705 poly_P_kin polyphosphate kinase 1 Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional Back     alignment and domain information
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A Back     alignment and domain information
>PRK01642 cls cardiolipin synthetase; Reviewed Back     alignment and domain information
>PLN02352 phospholipase D epsilon Back     alignment and domain information
>PRK13912 nuclease NucT; Provisional Back     alignment and domain information
>PLN02270 phospholipase D alpha Back     alignment and domain information
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) Back     alignment and domain information
>PLN02866 phospholipase D Back     alignment and domain information
>PRK12452 cardiolipin synthetase; Reviewed Back     alignment and domain information
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) Back     alignment and domain information
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PRK09428 pssA phosphatidylserine synthase; Provisional Back     alignment and domain information
>TIGR03705 poly_P_kin polyphosphate kinase 1 Back     alignment and domain information
>PLN03008 Phospholipase D delta Back     alignment and domain information
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] Back     alignment and domain information
>KOG3603|consensus Back     alignment and domain information
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B Back     alignment and domain information
>KOG1329|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3hsi_A458 Phosphatidylserine synthase; CDP- diacylglycerol-- 3e-42
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Length = 458 Back     alignment and structure
 Score =  150 bits (380), Expect = 3e-42
 Identities = 56/321 (17%), Positives = 106/321 (33%), Gaps = 45/321 (14%)

Query: 1   TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDN 60
            R  + ++   +                 P++ +     +P    E+ G+ H+K ++ D+
Sbjct: 95  QRNLLGAEKSATNADWYCEQRQTYQLPDDPNMFF----GVPINTREVFGVLHVKGFVFDD 150

Query: 61  CVIITGANLSGDYFT----SRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFIL 116
            V+ +GA+++  Y       R DRY  I  H  L+D                  D     
Sbjct: 151 TVLYSGASINNVYLHQFEKYRYDRYQKIT-HAELADSM-----------VNFINDYLLDF 198

Query: 117 DKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIEL 176
              +PL   +  +  E     R+   D+            S   +   P    ++PL  L
Sbjct: 199 SAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEY------SLKSAVKLPNVLSVSPLFGL 252

Query: 177 PPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLD--KPRVNYSVLMAHPT 234
                +L+  +  L L   +    + + T YFN  +     +    +      +++    
Sbjct: 253 GASGNELNQVIEDLFLQ-VQ--KKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKV 309

Query: 235 ANGFLGA----RGAAGGIPYAYTALAARFLSRVSNL----KVAMFEYVRSGWTYHAKGLW 286
           AN F          AG +PY Y +   RF  +        ++ +  +     TYH KG+W
Sbjct: 310 ANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVW 369

Query: 287 YSESPGSKPVLTLIGSPNFGI 307
             +         L+   N   
Sbjct: 370 VDDR------YILLTGNNLNP 384

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
3hsi_A458 Phosphatidylserine synthase; CDP- diacylglycerol-- 100.0
1v0w_A506 Phospholipase D; hydrolase, substrate SOAK, dibuty 99.5
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 99.07
4ggj_A196 Mitochondrial cardiolipin hydrolase; piRNA pathway 98.78
1xdp_A687 Polyphosphate kinase; PPK, PPK complex with AMPPNP 98.47
1xdp_A 687 Polyphosphate kinase; PPK, PPK complex with AMPPNP 98.31
4gel_A220 Mitochondrial cardiolipin hydrolase; piRNA, phosph 98.15
2o8r_A705 Polyphosphate kinase; structural genomics, protein 97.95
1byr_A155 Protein (endonuclease); phosphodiesterase,; 2.00A 97.39
3hsi_A 458 Phosphatidylserine synthase; CDP- diacylglycerol-- 97.27
4ggj_A196 Mitochondrial cardiolipin hydrolase; piRNA pathway 97.11
1v0w_A 506 Phospholipase D; hydrolase, substrate SOAK, dibuty 96.24
2o8r_A 705 Polyphosphate kinase; structural genomics, protein 94.3
4gel_A220 Mitochondrial cardiolipin hydrolase; piRNA, phosph 93.25
2c1l_A 358 Restriction endonuclease; BFII, domain fusion, hyd 87.22
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Back     alignment and structure
Probab=100.00  E-value=2.1e-40  Score=328.16  Aligned_cols=259  Identities=20%  Similarity=0.280  Sum_probs=193.4

Q ss_pred             hhhhhHHHHHhcCCceEEE--EeeCCCCcccccccCCCccccccCcceeEEEEecCcEEeecccCCcCcccc----cCcc
Q psy702            7 SKTLLSPIVKQFSHNCHVS--FYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTS----RQDR   80 (308)
Q Consensus         7 s~~~l~~l~~~~~~~v~i~--LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~Yftn----RqDR   80 (308)
                      +.+++.+|++..|+ |+|+  +|+           +|.+++|.+|++|+|++|+||+++++||||+++||++    |+||
T Consensus       107 ~~~~~~~L~~~g~n-v~v~~~~f~-----------~p~~~~~~~~r~H~Ki~viD~~v~~~G~Ni~d~y~~~~~~~~~dr  174 (458)
T 3hsi_A          107 NADWYCEQRQTYQL-PDDPNMFFG-----------VPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDR  174 (458)
T ss_dssp             HHHHHHHHHHHHTC-TTCCCCEEE-----------ECSSSSGGGCCEECCEEEETTEEEEESCCBSTTTTTCSSCCEECC
T ss_pred             cHHHHHHHHhhCCC-ceEeeeecC-----------CccccccccCcceeeEEEECCCEEEEeeecCHHHhcCCcccCcch
Confidence            46788899888665 8888  885           3667889999999999999999999999999999997    9999


Q ss_pred             eEEecCcchHHHHHHHHHHHHhccceeecCCCccc-cCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCC
Q psy702           81 YMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFI-LDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPA  159 (308)
Q Consensus        81 Y~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~-~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  159 (308)
                      |++|++ +.++|++..+++..      +..+..+. +...|  .+..+.. ....+..+..+....  .+  ....  . 
T Consensus       175 d~~i~g-~~~~D~~~~~~~~~------~~~g~~v~~l~~~~--~~~~~~~-~~~~~~~~~~l~~~~--~~--~~~~--~-  237 (458)
T 3hsi_A          175 YQKITH-AELADSMVNFINDY------LLDFSAVYPLDVTN--RPRTKEI-RGNIRAYRKDLAQNG--EY--SLKS--A-  237 (458)
T ss_dssp             EEEEEC-HHHHHHHHHHHHHT------TCCTTTCEESSSSC--CCCGGGT-HHHHHHHHHHHHHHC--CC--CCSS--C-
T ss_pred             hhhhcC-chHHHHHHHHHHhh------hhcCccchhhHHHh--cccchhh-HHHHHHHHHhhhhcc--cc--cccc--c-
Confidence            999999 99999999998764      23333332 22112  2221111 111111222222110  11  0000  0 


Q ss_pred             CCCCCCCCeEEEEeecCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCC
Q psy702          160 LSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANG  237 (308)
Q Consensus       160 ~~~~~~~dt~v~P~~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANg  237 (308)
                        ..+..+++++|+.+.|+. ...-.+.+..+|..|  +++|+|+||||+|++.+.++|.  +.+|++|+|||+++.||+
T Consensus       238 --~~~~~~~~v~p~~~~~~~-~~~i~~~~~~lI~~A--~~~I~I~tpYf~p~~~~~~aL~~Aa~rGV~VrIi~~~~~and  312 (458)
T 3hsi_A          238 --VKLPNVLSVSPLFGLGAS-GNELNQVIEDLFLQV--QKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVAND  312 (458)
T ss_dssp             --BSSCSSCEEEEEEEESSS-SCHHHHHHHHHHHTC--SSEEEEECSSSCCCHHHHHHHHHHHTTTCEEEEEEECGGGST
T ss_pred             --CCCCceEEEecCCCCCCc-hhHHHHHHHHHHHhc--ccEEEEEEeccCCCHHHHHHHHHHHHCCCeEEEEECCccccC
Confidence              123457899999998863 222335667778877  8999999999999999999887  579999999999999999


Q ss_pred             CCCCcc----cccChhHHHHHHHHHHHHH---hhcCc---eEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702          238 FLGARG----AAGGIPYAYTALAARFLSR---VSNLK---VAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI  307 (308)
Q Consensus       238 F~~s~g----~sg~IP~~Y~~~~~~f~~~---l~~~~---v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~  307 (308)
                      ||.+++    ..+.+|++|+..+++|+++   +.+.|   |++|||  ++|++|||++|+|      ..+++|||+||+.
T Consensus       313 ~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~--~~~~lHaK~~vvD------~~~~~vGS~N~d~  384 (458)
T 3hsi_A          313 FYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRD--GDNTYHLKGVWVD------DRYILLTGNNLNP  384 (458)
T ss_dssp             TCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECB--TTBEECCCEEEET------TTEEEEECCCCSH
T ss_pred             CccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEec--CCCceeEEEEEEC------CeEEEecCCCCCc
Confidence            998776    6789999999999999764   45677   777776  7999999999998      3689999999984
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Back     alignment and structure
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Back     alignment and structure
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A Back     alignment and structure
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* Back     alignment and structure
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* Back     alignment and structure
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A Back     alignment and structure
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 Back     alignment and structure
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Back     alignment and structure
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Back     alignment and structure
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A Back     alignment and structure
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Back     alignment and structure
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 Back     alignment and structure
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A Back     alignment and structure
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d1byra_152 Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 98.74
d1v0wa2246 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 98.65
d1byra_152 Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 97.74
d1v0wa1258 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 97.43
d1v0wa1258 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 96.87
d1v0wa2246 Phospholipase D {Streptomyces sp. [TaxId: 1931]} 96.51
d2o8ra3188 Polyphosphate kinase, PPK {Porphyromonas gingivali 89.61
d1xdpa3187 Polyphosphate kinase, PPK {Escherichia coli [TaxId 86.03
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.74  E-value=1.6e-08  Score=82.07  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHH
Q psy702          185 SRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSR  262 (308)
Q Consensus       185 ~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~  262 (308)
                      .+.+..+|..|  +++|+|+++||.. +++.++|.  +++|++|+||+.....++.                ........
T Consensus        15 ~~~i~~~I~~A--~~~I~I~~~~~~~-~~i~~aL~~a~~rGV~Vril~~~~~~~~~----------------~~~~~~~~   75 (152)
T d1byra_          15 RVLVLSAIDSA--KTSIRMMAYSFTA-PDIMKALVAAKKRGVDVKIVIDERGNTGR----------------ASIAAMNY   75 (152)
T ss_dssp             HHHHHHHHHHC--SSEEEEEESSBCC-HHHHHHHHHHHHTTCEEEEEEESTTCCSH----------------HHHHHHHH
T ss_pred             HHHHHHHHHhC--CcEEEEEEEeecC-HHHHHHHHHHHhcCCeEEEEEEeecccch----------------hhHHHHHH
Confidence            35567788888  7899999999985 56777776  5689999999986643321                11222333


Q ss_pred             hhcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702          263 VSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG  306 (308)
Q Consensus       263 l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~  306 (308)
                      +...++..+-.. .+...|+|.+.+|      ....++||+||+
T Consensus        76 ~~~~~~~~~~~~-~~~~~H~K~~ivD------~~~~~~GS~N~t  112 (152)
T d1byra_          76 IANSGIPLRTDS-NFPIQHDKVIIVD------NVTVETGSFNFT  112 (152)
T ss_dssp             HHHTTCCEEEEC-SSSCCCCCEEEET------TTEEEEESCCBS
T ss_pred             hhhccccccccc-cccccccceEEec------CceeEecccCCC
Confidence            344556655443 6678999999997      368999999996
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure